Citrus Sinensis ID: 011126

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490---
Protein Sequence
MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC
Secondary Structure (PSIPRED)
ccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEcccccccEEEEEcccccccEEcccccccccccccccEEEEEcccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEccccccccccccccEEEEEEccccccccccccccccEEEEEcccccEEEEEccEEEEEEcccccEEEEEcccccEEEEEcccccEEEcccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEccccccccccEEEEEccccccccEEEccccccccccEEEEEcccccEEEEccccccccccccEEEccccccEEEEEEcccccEEEEcccccEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEcccccccEEEEEEcccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHcccHHHccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHccccccccccccccccccccccccEEEEEccccccEEEEEcccccccccccccccccccccccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEEcccccccEEEcccccccEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccEEEEcccccEEEEEccccEEEEEEccccccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEEEEccccccEEEEEEcccccEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEcccccc
Coil and Loop (DISEMBL)
magvsneeeeEQFFDTCeeisyvsdrdsdcsegcsssvEHLADSVLcysqseiwtgypqsVNERRSKFLKLMGFILDqslmnaedledesrVRTQLDvdritensgavlrtsgfgddihfsqssissklceapevlehftlkdhaacriddwgkgadlvvsdndqdEIEIESRlqesgssqsvsfdeflgtpgssssfvqplpsrqdeesrDLVDAKRKVKRGWLKKLGAMARIIDrhgsatlkpgdheltlgqrmrrvrvhpvkkqsrelsslytgqeflahegsiltmkfsldgqylasggedgtVRVWKVIEHerldgfdvqdtdpsclYFTINHlsqlipidvdkekidktkslrkssdltcvvlppkvfrllekplhefqghssevldlswskngfllsssadKTVRLWQVGIDRClrvfshnnyvtsvafnpvddnyfisgsidgKVRIWEVrrcqvvdytdIREIVSAVcycpdgkvrqnsacnfc
Flexible Loop (DISEMBL)
magvsneeeeeqFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTqldvdritensgavlrtsgfgdDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESrlqesgssqsVSFDEFLGTPGssssfvqplpsrqdeesrdlvdakrkvkrgwlkklGAMARIIdrhgsatlkpgdheltlgqrmrrvrvhpvkkqsrelsslYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHlsqlipidvdKEKIDKtkslrkssdltcvvLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSvafnpvddnyFISGsidgkvriwEVRRCQVVDYTDIREIVSAVcycpdgkvrqnsacnfc
Low Complexity Region (SEG)
MAGVSNeeeeeQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC
Disordered region (IsUnstruct)
***************TCEEISYV**************VEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLM*******************I****GAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVV***********************************************************VKRGWLKKLGAMARIID*************************************LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID*******SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKV*********
Disordered Region (DISOPRED)
**********EQFFDTCEE**************************LCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQS*******************DRITENSGAV*******************************TLKDHAACRIDDWGKGADLVV*********IESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPS***************VKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI************LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC
Disordered Region (DISEMBL)
*************FDTCEEISY****************EHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIE************SFDEFLGTP**********************DAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC
Disordered Region (DISPRO)
*************FDTCEEI****************SVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSL******EDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSA***C
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	493	2.2.26 [Sep-21-2011]
Q6LA54	933	Uncharacterized WD repeat	yes	no	0.328	0.173	0.381	9e-34
O60136	586	Uncharacterized WD repeat	no	no	0.328	0.276	0.371	2e-32
Q9XSC3	912	WD repeat-containing prot	yes	no	0.387	0.209	0.364	2e-31
Q498F0	912	WD repeat-containing prot	N/A	no	0.387	0.209	0.371	4e-30
Q5JSH3	913	WD repeat-containing prot	yes	no	0.367	0.198	0.342	3e-29
Q6NVE8	915	WD repeat-containing prot	yes	no	0.367	0.197	0.342	4e-29
Q9R037	908	WD repeat-containing prot	yes	no	0.367	0.199	0.342	4e-29
Q03177	834	WD repeat-containing prot	yes	no	0.421	0.249	0.318	1e-28
P32330	852	2-deoxy-glucose resistant	no	no	0.411	0.238	0.296	3e-20
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.417	0.134	0.295	3e-14

>sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2

 Score =  145 bits (365), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 113/199 (56%), Gaps = 37/199 (18%)

Query: 286 SILTMKFSLDGQYLASGGEDGTVRVWKVI--EHERLDGFDVQDTDPSCLYFTINHLSQLI 343
           +I  MKFS DG+YLA GG+D  +R+W V+  EH R    +   +DP              
Sbjct: 318 AIWAMKFSRDGRYLAVGGQDRILRIWAVLDSEHARSVASETCSSDP-------------- 363

Query: 344 PIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLL 403
               +  K++               L   VF   E P+ E+ GH++++LDLSWS+N FLL
Sbjct: 364 ----NNPKLN---------------LKAPVFS--EAPIREYAGHTADILDLSWSRNNFLL 402

Query: 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463
           SSS DKT RLW      CL  F H+++VTS+AF+P DD +F+SGS+D K+R+W ++   V
Sbjct: 403 SSSMDKTARLWHPVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAV 462

Query: 464 VDYTDIREIVSAVCYCPDG 482
             + ++ E+++AV + PDG
Sbjct: 463 SFWNELPELITAVAFSPDG 481

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O60136|YNS5_SCHPO Uncharacterized WD repeat-containing protein C18H10.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H10.05 PE=4 SV=1

 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 111/199 (55%), Gaps = 37/199 (18%)

Query: 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC-LYFTINHLSQLIP 344
           S+   + S  G+YLA+ G+D  +RVWKVIE        +++   SC  +FT         
Sbjct: 188 SVWASEISKSGKYLATAGKDAIIRVWKVIETPERRETLLKEGPQSCGRFFT--------- 238

Query: 345 IDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLS 404
                                    P  +F    +P+ E  GH++EVL +SWSKN FLL+
Sbjct: 239 -------------------------PSSIFE--PEPVLECVGHNAEVLSISWSKNDFLLT 271

Query: 405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464
           SSAD+TVRLW     + L VF HN  VT VAF+P+DD YF+SGS+D K+++W + R +++
Sbjct: 272 SSADRTVRLWHPKSTKSLAVFRHNEIVTCVAFHPIDDRYFVSGSLDCKIQLWSILRHKIL 331

Query: 465 DYTDIREIVSAVCYCPDGK 483
            +T++  +VS +C+ PDG+
Sbjct: 332 HWTELEYVVSTICFYPDGE 350

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 122/206 (59%), Gaps = 15/206 (7%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H G++ TMKFS  G+ LAS G+D  VR+W +      + FD  +     +    N   ++
Sbjct: 509 HMGAVWTMKFSHCGRLLASAGQDNVVRIWAL-----KNAFDYFNN----MRMKYNTEGRV 559

Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPP--KVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400
            P    +E ++ +KS   +   +     P  K     ++P  +++GH++++LDLSWSKN 
Sbjct: 560 SP-SPSQESLNSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNY 618

Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
           FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+DGK+R+W +  
Sbjct: 619 FLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPD 678

Query: 461 CQVVDYTDI---REIVSAVCYCPDGK 483
            +V  + ++    ++++A  +C +GK
Sbjct: 679 KKVALWNEVDGQTKLITAANFCQNGK 704

Downstream effector for RAB11. May be involved in vesicle recycling.

Bos taurus (taxid: 9913)

>sp|Q498F0|WDR44_XENLA WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1

 Score =  133 bits (334), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 120/207 (57%), Gaps = 16/207 (7%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H G++ TMKFS  G+ LAS G+D  VR+W  +     D F+        +    N   ++
Sbjct: 512 HVGAVWTMKFSHCGRLLASAGQDNVVRIW--VLKNAFDYFN-------NMRIKYNTEGRV 562

Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCV--VLPP-KVFRLLEKPLHEFQGHSSEVLDLSWSKN 399
            P    +E ++ +KS       +    V P  K     + P  +++GH++++LDLSWSKN
Sbjct: 563 SP-SPSQESLNSSKSDTDGGVFSGTDDVDPDDKNAPFRQVPFCKYKGHTADLLDLSWSKN 621

Query: 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
            FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+DGK+R+W + 
Sbjct: 622 YFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIP 681

Query: 460 RCQVVDYTDI---REIVSAVCYCPDGK 483
             +V  + +I    ++++A  +C +GK
Sbjct: 682 DKKVALWNEIDGQTKLITAANFCQNGK 708

Downstream effector for rab11. May be involved in vesicle recycling.

Xenopus laevis (taxid: 8355)

>sp|Q5JSH3|WDR44_HUMAN WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1

 Score =  130 bits (326), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 115/216 (53%), Gaps = 35/216 (16%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ----DTDPSCLYFTINH 338
           H G++ TMKFS  G+ LAS G+D  VR+W +      D F+      +T+          
Sbjct: 510 HMGAVWTMKFSHCGRLLASAGQDNVVRIWAL--KNAFDYFNNMRMKYNTEGRVSPSPSQE 567

Query: 339 LSQLIPIDVD--------KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390
                  D D        ++  DK    R                  ++P  +++GH+++
Sbjct: 568 SLSSSKSDTDTGVCSGTDEDPDDKNAPFR------------------QRPFCKYKGHTAD 609

Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID 450
           +LDLSWSKN FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+D
Sbjct: 610 LLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLD 669

Query: 451 GKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGK 483
           GK+R+W +   +V  + ++    ++++A  +C +GK
Sbjct: 670 GKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGK 705

Downstream effector for RAB11. May be involved in vesicle recycling.

Homo sapiens (taxid: 9606)

>sp|Q6NVE8|WDR44_MOUSE WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1

 Score =  129 bits (325), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 115/216 (53%), Gaps = 35/216 (16%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ----DTDPSCLYFTINH 338
           H G++ TMKFS  G+ LAS G+D  VR+W +      D F+      +T+          
Sbjct: 512 HMGAVWTMKFSHCGRLLASAGQDNIVRIWAL--KNAFDYFNNMRMKYNTEGRVSPSPSQE 569

Query: 339 LSQLIPIDVD--------KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390
                  D D        ++  DK    R                  ++P  +++GH+++
Sbjct: 570 SLSSSKSDTDMGVCSGTDEDPDDKNAPFR------------------QRPFCKYKGHTAD 611

Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID 450
           +LDLSWSKN FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+D
Sbjct: 612 LLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLD 671

Query: 451 GKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGK 483
           GK+R+W +   +V  + ++    ++++A  +C +GK
Sbjct: 672 GKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGK 707

Downstream effector for RAB11. May be involved in vesicle recycling.

Mus musculus (taxid: 10090)

>sp|Q9R037|WDR44_RAT WD repeat-containing protein 44 OS=Rattus norvegicus GN=Wdr44 PE=1 SV=1

 Score =  129 bits (325), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 115/216 (53%), Gaps = 35/216 (16%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ----DTDPSCLYFTINH 338
           H G++ TMKFS  G+ LAS G+D  VR+W +      D F+      +T+          
Sbjct: 505 HMGAVWTMKFSHCGRLLASAGQDNIVRIWAL--KNAFDYFNNMRMKYNTEGRVSPSPSQE 562

Query: 339 LSQLIPIDVD--------KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390
                  D D        ++  DK    R                  ++P  +++GH+++
Sbjct: 563 SLSSSKSDTDMGVCSGTDEDPDDKNAPFR------------------QRPFCKYKGHTAD 604

Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID 450
           +LDLSWSKN FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+D
Sbjct: 605 LLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLD 664

Query: 451 GKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGK 483
           GK+R+W +   +V  + ++    ++++A  +C +GK
Sbjct: 665 GKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGK 700

Downstream effector for RAB11. May be involved in vesicle recycling.

Rattus norvegicus (taxid: 10116)

>sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR102C PE=1 SV=1

 Score =  128 bits (322), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 34/242 (14%)

Query: 265 KKQSRELSSLYTGQEFLAHEG---------------SILTMKFSLDGQYLASGGEDGTVR 309
           +K  ++   L+  QE +A+EG               +I + KFS DG+++A+G +DG +R
Sbjct: 139 RKNLKQFRRLFLAQELMAYEGETVTSTSKSSEPTSKAIWSTKFSRDGKFMATGSKDGKIR 198

Query: 310 VWKVI----EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK------IDKTKSLR 359
           +WKVI    E   LD     + +       I    Q+  ++  KEK       +K +   
Sbjct: 199 IWKVIGSPVERAELDSSAESNKEARAKSMRIKQ--QVSSLNNPKEKQFLDSATEKYEEKE 256

Query: 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
           K  +L   V  P   RL       ++ H  +VLD++WSKN F+LS+S DKTV+LW     
Sbjct: 257 KLLNLYAPVFHPTPLRL-------YKEHVQDVLDINWSKNNFILSASMDKTVKLWHPDRK 309

Query: 420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
             L+ F H ++VT V F+P DD +FISG +D K R+W +   +V    D ++++++V   
Sbjct: 310 NSLKTFIHPDFVTCVEFHPTDDRFFISGCLDHKCRLWSILDDEVSFEYDCQDLITSVTLS 369

Query: 480 PD 481
           P+
Sbjct: 370 PE 371

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P32330|DGR2_YEAST 2-deoxy-glucose resistant protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DGR2 PE=1 SV=1

 Score =  100 bits (248), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 23/226 (10%)

Query: 272 SSLYTGQEFLAH----EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT 327
           S+ Y G+  +A+    + SI    FS DG+Y+  G +DG++ +WKVI +  +   ++  +
Sbjct: 157 STTYQGEPAVANSELFKNSICCCTFSHDGKYMVIGCKDGSLHLWKVI-NSPVKRSEMGRS 215

Query: 328 DPSCLYFTINHLS---QLIPIDVDKEKI--------DKTKSLRKSSDLTCVVLPPKVFRL 376
           + S      N L     L  I      I        D+ +   K   L   V    VFR+
Sbjct: 216 EKSVSASRANSLKIQRHLASISSHNGSISSNDLKPSDQFEGPSKQLHLYAPVFYSDVFRV 275

Query: 377 LEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAF 436
                  F  H+ ++LD +WSKNGFL+++S DKT +LW       L+ F H ++VTS  F
Sbjct: 276 -------FMEHALDILDANWSKNGFLITASMDKTAKLWHPERKYSLKTFVHPDFVTSAIF 328

Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDG 482
            P DD + I+G +D + R+W +   +V    D +++++++   P G
Sbjct: 329 FPNDDRFIITGCLDHRCRLWSILDNEVSYAFDCKDLITSLTLSPPG 374

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 115/237 (48%), Gaps = 31/237 (13%)

Query: 274  LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333
            LYT Q    H   + ++ FS DG  LASGG+D  VR+W +     L       +    L 
Sbjct: 1067 LYTLQ---GHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLV 1123

Query: 334  FTINHLS-------QLIPI-DVDKEKIDKTKSLRKSSDLTCVVLPP-----------KVF 374
            F+ N ++       Q++ + D+  +K   T     ++ +  V   P           +  
Sbjct: 1124 FSPNGVTLANGSSDQIVRLWDISSKKCLYTLQ-GHTNWVNAVAFSPDGATLASGSGDQTV 1182

Query: 375  RLLE----KPLHEFQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLRVF-SHN 428
            RL +    K L+  QGH+S V  + ++ +G  L+S S+D+TVRLW++   +CL  F  H 
Sbjct: 1183 RLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHT 1242

Query: 429  NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKV 484
            ++V SV FNP D +   SGS D  VR+W++   + +  +      V++V + PDG +
Sbjct: 1243 SWVNSVVFNP-DGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSM 1298

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	493
255555687	743	WD-repeat protein, putative [Ricinus com	0.949	0.629	0.586	1e-145
449452206	743	PREDICTED: uncharacterized protein LOC10	0.955	0.633	0.544	1e-128
359473960	729	PREDICTED: uncharacterized protein LOC10	0.943	0.637	0.555	1e-124
225470952	753	PREDICTED: uncharacterized protein LOC10	0.939	0.614	0.516	1e-121
225455320	731	PREDICTED: uncharacterized protein LOC10	0.945	0.637	0.513	1e-120
224053745	509	predicted protein [Populus trichocarpa]	0.547	0.530	0.778	1e-120
302143934	674	unnamed protein product [Vitis vinifera]	0.837	0.612	0.5	1e-118
356527704	745	PREDICTED: WD repeat-containing protein	0.935	0.618	0.524	1e-118
297742407	665	unnamed protein product [Vitis vinifera]	0.870	0.645	0.536	1e-117
255587633	714	WD-repeat protein, putative [Ricinus com	0.920	0.635	0.495	1e-116

>gi|255555687|ref|XP_002518879.1| WD-repeat protein, putative [Ricinus communis] gi|223541866|gb|EEF43412.1| WD-repeat protein, putative [Ricinus communis]

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/484 (58%), Positives = 352/484 (72%), Gaps = 16/484 (3%)

Query: 3   GVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVN 62
           G  +EEEEE+FFD+ EE S +SD  S+  E CSSS++    S+L  SQ E+W   P+SV 
Sbjct: 2   GNYSEEEEERFFDSREETSSMSDSGSNVYEDCSSSID-FDYSLLSESQYEVWIKSPESVY 60

Query: 63  ERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQ 122
           +RR +FLK M    DQ+ ++  D  +ES  +TQL +DR+ + +GAVLRTSG GD +  ++
Sbjct: 61  DRRDRFLKWMN--SDQNTISEGDSINESFTKTQLGIDRLMDTTGAVLRTSGLGDGLLSTE 118

Query: 123 SSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQS 182
           + +SS+  E  E LE  ++ D+  C I +   G + VV + DQD +   SRL++ GS+QS
Sbjct: 119 TPVSSQSSETQESLEDGSVDDNFVCTIRNLDDGTEFVVDELDQDGML--SRLRKVGSNQS 176

Query: 183 VSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGA---MARIIDRHG 239
           +SF+EF  T G SS  VQ   S+   E+RDL++ K+K K  WL++LG     AR++DRHG
Sbjct: 177 LSFEEFQRTIGVSS-LVQRFSSKYGGEARDLIEEKKKTKGSWLRRLGKSNHAARVVDRHG 235

Query: 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299
           +   K  D E      M+RV+VHP KK+S+ELSSLY+GQEFLAH+GSILTMKFS DGQYL
Sbjct: 236 ATAFKNNDRE------MQRVKVHPSKKRSKELSSLYSGQEFLAHDGSILTMKFSPDGQYL 289

Query: 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359
           ASGGED  VRVWKVIE +RLD F +Q  D SC+YFT+NHLS++  ++VDK K +KTK   
Sbjct: 290 ASGGEDSVVRVWKVIEDDRLDQFHIQANDTSCVYFTMNHLSEIASLNVDKMKSEKTKK-H 348

Query: 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
            SSD TCV+ PPKVFR+LEKPLHEF GHS EVLDLSWSK  FLLSSS DKTVRLWQVG D
Sbjct: 349 ISSDSTCVIFPPKVFRVLEKPLHEFHGHSGEVLDLSWSKKRFLLSSSVDKTVRLWQVGCD 408

Query: 420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
           RCLRVFSHNNYVT V FNP+DDNYFISGSIDGKVRIWEV RC VVDYT IREIV+AVCY 
Sbjct: 409 RCLRVFSHNNYVTCVDFNPMDDNYFISGSIDGKVRIWEVIRCLVVDYTVIREIVTAVCYR 468

Query: 480 PDGK 483
           P GK
Sbjct: 469 PGGK 472

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452206|ref|XP_004143851.1| PREDICTED: uncharacterized protein LOC101204856 [Cucumis sativus] gi|449501765|ref|XP_004161452.1| PREDICTED: uncharacterized LOC101204856 [Cucumis sativus]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 264/485 (54%), Positives = 337/485 (69%), Gaps = 14/485 (2%)

Query: 1   MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLAD--SVLCYSQSEIWTGYP 58
           M  V  EEE E+F+DT EEIS VSD  SDCSE CS+S     D    L Y     W    
Sbjct: 2   MDLVYCEEEIERFYDTREEISSVSDWGSDCSENCSTSFGDDGDIPENLRYVG---WIRNL 58

Query: 59  QSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDI 118
           +SV ERR+KF K MG  LDQ+  N ++ E +S    ++  DRI E+ G VLR SG   ++
Sbjct: 59  ESVYERRNKFFKWMGLDLDQNFDNTDEEEGDS---WKVYRDRIIEDCGTVLRLSGSEGEL 115

Query: 119 HFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESG 178
             S  +ISS   EAPE   +  ++++ AC I +   G + +V    QD +   + L+E G
Sbjct: 116 S-SSLTISSMSNEAPESSGNVAVEENHACTIRNLDNGTEFIVDSFRQDGML--NMLREVG 172

Query: 179 SSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRH 238
           S++S SFDEF    G S   VQ L  +  E++  +V+A+++ K+GWL+KLGA+A I+D +
Sbjct: 173 SNRSFSFDEFERNIGQSP-LVQQLFRKNVEKAGVIVNARKQAKKGWLRKLGAVACIVD-N 230

Query: 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY 298
           G   +K G    +    +++VRVHP KKQS+ELSSL+ GQEF AH+GSI TMKFS+DG+Y
Sbjct: 231 GEGAMKTGVSNSSSKAGIQQVRVHPYKKQSKELSSLFVGQEFEAHKGSISTMKFSVDGRY 290

Query: 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358
           LA+ GEDG VRVW+V+E  R D FD+ + DPS LYF++NHLS+L P+DV KE + KTK L
Sbjct: 291 LATAGEDGVVRVWQVLEDVRFDNFDIHNVDPSSLYFSMNHLSKLDPLDVPKETLGKTK-L 349

Query: 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI 418
           ++SS   CV+ PPK+FR+LEKPLHEF GHS EVLDLSWSK G LLSSS DKTVRLWQ+G 
Sbjct: 350 KRSSSTACVIFPPKLFRILEKPLHEFLGHSGEVLDLSWSKKGLLLSSSVDKTVRLWQLGC 409

Query: 419 DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCY 478
           D CLRV+ HNNYVT V+FNP+D+N+FISGSIDGKVRIWEV  CQV+DY DIREIVSAVCY
Sbjct: 410 DTCLRVYCHNNYVTCVSFNPIDENHFISGSIDGKVRIWEVLACQVIDYIDIREIVSAVCY 469

Query: 479 CPDGK 483
            PDGK
Sbjct: 470 RPDGK 474

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473960|ref|XP_002263491.2| PREDICTED: uncharacterized protein LOC100249640 [Vitis vinifera]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 271/488 (55%), Positives = 334/488 (68%), Gaps = 23/488 (4%)

Query: 3   GVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSS---VEHLADSVLCYSQSEIWTGYPQ 59
           G S+EEE ++FFDT EE S   D  SD S    SS   V+  +DS   Y    +W   PQ
Sbjct: 2   GSSSEEEGDRFFDTREEFS---DSASDGSVDFRSSNGVVDGDSDS-FGYG---LWIKNPQ 54

Query: 60  SVNERRSKFLKLMGFILDQSLMNAEDLE----DESRVRTQLDVDRITENSGAVLRTSGFG 115
           SVNERR KFLK M   +DQ+ + +E+ E    D    + +++ DR TENSGAVLR S   
Sbjct: 55  SVNERRDKFLKWMNLDMDQNRITSEESESESGDVCCDKIKIETDRATENSGAVLRNSVSE 114

Query: 116 DDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQ 175
           D +   Q S+S +     E+LE    KD+  C+I +   G + VV     + +  + R  
Sbjct: 115 DRVSSIQCSMSFR-SNGEELLEGGIRKDNLPCKIKNLDDGTEFVVDKLGGNGMHGKPR-- 171

Query: 176 ESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARII 235
           E GS++ VS +EF  T G S   VQ    R+ EE  + VD K+KVKRGWL++LGA+A + 
Sbjct: 172 EVGSNRVVSMEEFQRTIGLSP-LVQQHLQREVEEVSNSVDMKKKVKRGWLRRLGAVACVR 230

Query: 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295
           DR G A    G    T+G + RRVRVHP +K+S+ELSSLY G+EF AH G ILTMKFSLD
Sbjct: 231 DRQGEA----GSTHATVGAKTRRVRVHPYRKRSKELSSLYKGREFAAHRGPILTMKFSLD 286

Query: 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355
           G YLASGGEDG VRVWK+IE       D+QD DPS +YFT N  S+L P+DVDKEK  K 
Sbjct: 287 GHYLASGGEDGIVRVWKIIEDGSSKEVDIQDIDPSSVYFTRND-SELTPLDVDKEKRGKK 345

Query: 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQ 415
           K L++SSD TCV++PPKVFR+LE+PLHEFQGHS ++LDLSWSK G+LLSSS DKTVRLWQ
Sbjct: 346 KRLKRSSDSTCVIIPPKVFRILEEPLHEFQGHSGDILDLSWSKKGYLLSSSTDKTVRLWQ 405

Query: 416 VGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475
           VG ++CLRVF HN+YVT V FNPVDDNYFISGSIDGKVRIWEV R +VVD+TDIR+IV+A
Sbjct: 406 VGQEQCLRVFYHNDYVTCVDFNPVDDNYFISGSIDGKVRIWEVHRHKVVDWTDIRDIVTA 465

Query: 476 VCYCPDGK 483
           VCY PDGK
Sbjct: 466 VCYRPDGK 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470952|ref|XP_002264456.1| PREDICTED: uncharacterized protein LOC100241604 [Vitis vinifera]

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/482 (51%), Positives = 321/482 (66%), Gaps = 19/482 (3%)

Query: 8   EEEEQFFDTCEEISYVSDRDSDCSEGCSS---SVEHLADSVLCYSQSEIWTGYPQSVNER 64
           EEE+QFFDT E+I+ VSD  SDC E   S   + + ++ S  C    E+W   P+S+ ER
Sbjct: 7   EEEDQFFDTREDITSVSDSGSDCQENLDSEWRNTDFVSGSFGC----EVWIKNPESIRER 62

Query: 65  RSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSS 124
           R+KFLK MG  +D  +   E  E+      + ++DRITENSGAVL  S          SS
Sbjct: 63  RTKFLKWMGLGVDHVVR--EVPEELVSGELKGEIDRITENSGAVLGMS----SSDDGFSS 116

Query: 125 ISSKLCEAPEVLEHF--TLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQS 182
             S +C   +  +    +L+++  CRI     G + +V +  Q    + SRL+E GS++ 
Sbjct: 117 SQSSMCWPSDAQDFLGGSLEENLFCRIRSLDDGREFIVDELGQ--YGMLSRLREVGSNRV 174

Query: 183 VSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIID-RHGSA 241
           V+ +EF  T G S   VQ +  ++ E++ + V+A ++ +RGW ++LGA+A I +      
Sbjct: 175 VTIEEFERTLGLSP-LVQKMMRKEAEKACNPVEAAKRCRRGWWRRLGAVACIANCPIEVG 233

Query: 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS 301
             KP      LG + + V+V P +++S+ELS+LY GQ+F+AHEGSILTMKFS DGQYL S
Sbjct: 234 KFKPNGPYPILGTKSQTVKVRPYRRRSKELSALYMGQDFVAHEGSILTMKFSPDGQYLGS 293

Query: 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361
            GED  VRVW V E ER DGFD  D D S  YFT+NHLS+L+PI  DKEK  K K+LRKS
Sbjct: 294 AGEDRVVRVWLVTESERSDGFDAPDVDCSYAYFTVNHLSELVPIHADKEKKGKLKTLRKS 353

Query: 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC 421
            D  CV+ P KVF++LEKPLHEF GH  EVLD+SWSKN +LLSSS DKTVRLWQVG ++C
Sbjct: 354 LDAACVIFPQKVFQILEKPLHEFHGHCGEVLDISWSKNKYLLSSSVDKTVRLWQVGCNQC 413

Query: 422 LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481
           L+VFSHNNYVT V FNPVDDNYFISGSIDGKVRIWE+   QVVD+TDI EIV+AVCY PD
Sbjct: 414 LKVFSHNNYVTCVQFNPVDDNYFISGSIDGKVRIWEIPGGQVVDWTDITEIVTAVCYRPD 473

Query: 482 GK 483
           GK
Sbjct: 474 GK 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455320|ref|XP_002271917.1| PREDICTED: uncharacterized protein LOC100245187 [Vitis vinifera]

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 249/485 (51%), Positives = 325/485 (67%), Gaps = 19/485 (3%)

Query: 6   NEEEEEQFFDTCEEISYVSDRDSD--CSEG--CSSSVEHLADSVLCYSQSEIWTGYPQSV 61
           NE+E+ Q+FD  +++   S  DS   C++    SS   + A     Y   ++W G P SV
Sbjct: 7   NEDEQYQYFDAHDDMDAASLSDSSSDCNDNPNSSSGFNNYASRAFQY---DVWAGSPGSV 63

Query: 62  NERRSKFLKLMGFILDQ-SLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHF 120
            ERR+KFL  MG  LD+ S  N+ D+  +S       VDR+ E+SGAVLRT GF D+   
Sbjct: 64  KERRNKFLNWMGLSLDRFSCDNSVDVCSDS---LGGGVDRVRESSGAVLRTLGFEDEFCS 120

Query: 121 SQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSS 180
           S+SS+S    E  E      L++   CRI +   GA+  V  ++  E    S  +E G  
Sbjct: 121 SRSSMSRWSNEQDES----GLQEKFVCRIGNLDVGAEFDV--DEMGEGSEVSEFREVGLD 174

Query: 181 QSVSFDEFLGTPGSS-SSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHG 239
           + V+ +E      S  SS VQ +  R+ EE+ + V A ++VK+GWL +L +M+ I+DRHG
Sbjct: 175 RLVTINECQNISDSLLSSSVQQVIQREIEEASNPVGAAKRVKKGWLSRLRSMSCIMDRHG 234

Query: 240 SA-TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY 298
               L   D     G R++RVRV   +KQ +ELS+LY GQ+  AHEGSIL+MKFS DG+Y
Sbjct: 235 EIHNLTTNDTNPIPGARIQRVRVRQCRKQMKELSALYKGQDIQAHEGSILSMKFSPDGKY 294

Query: 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358
           LAS GEDG VR+W+V+E ER +  D+ + DP C+YFT+NHLS+L P+  +KEK+ K +SL
Sbjct: 295 LASAGEDGIVRIWQVVEDERSNDHDIPEIDPMCIYFTVNHLSELTPLFAEKEKLSKLRSL 354

Query: 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI 418
           RK+SD  CV+ PPKVFR+LEKPLHEF GHSSE+LDLSWS N +LLSSS DKTVRLW+VG 
Sbjct: 355 RKTSDSACVIFPPKVFRILEKPLHEFHGHSSEILDLSWSNNNYLLSSSIDKTVRLWRVGC 414

Query: 419 DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCY 478
           D CL++FSHNNYVT V FNPVDDNYFISGSIDGKVRIW +  CQVVD+TDIRE+V+AVCY
Sbjct: 415 DHCLKIFSHNNYVTCVQFNPVDDNYFISGSIDGKVRIWAIPGCQVVDWTDIREMVTAVCY 474

Query: 479 CPDGK 483
            PDG+
Sbjct: 475 RPDGQ 479

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053745|ref|XP_002297958.1| predicted protein [Populus trichocarpa] gi|222845216|gb|EEE82763.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/271 (77%), Positives = 232/271 (85%), Gaps = 1/271 (0%)

Query: 213 LVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS 272
           +V+AKRK KR WLKKLG   RIIDR G+A  KP D E T G +M RV+VHP KK ++ELS
Sbjct: 1   MVEAKRKAKRSWLKKLGLKGRIIDRQGTAASKPCDLESTTGAKMHRVKVHPSKKHTKELS 60

Query: 273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCL 332
           SL+TGQEFLAH+GSILTMKFSLDGQYLASGGEDG VRVWKVIE +R + FD+  TDPSCL
Sbjct: 61  SLFTGQEFLAHKGSILTMKFSLDGQYLASGGEDGVVRVWKVIEDDRSNQFDISATDPSCL 120

Query: 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           YFT+NHLS+L  +DVDK+ IDKTK L  SSD TCVV+PPKVFR+LEKPLHEFQGH+ EVL
Sbjct: 121 YFTMNHLSELASLDVDKKVIDKTKRL-GSSDSTCVVVPPKVFRVLEKPLHEFQGHNCEVL 179

Query: 393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGK 452
           DLSWSK  FLLSSS DKTVRLWQVG DRCLRVFSHNNYVTSV FNPVDDNYFISGSIDGK
Sbjct: 180 DLSWSKKRFLLSSSIDKTVRLWQVGCDRCLRVFSHNNYVTSVDFNPVDDNYFISGSIDGK 239

Query: 453 VRIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483
           VRIWEV  C+VVDYTDIREIV+A CYCP GK
Sbjct: 240 VRIWEVLGCRVVDYTDIREIVTAACYCPGGK 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143934|emb|CBI23039.3| unnamed protein product [Vitis vinifera]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/480 (50%), Positives = 308/480 (64%), Gaps = 67/480 (13%)

Query: 6   NEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERR 65
           NE+E+ Q+FD  +++   S                L+DS   Y   ++W G P SV ERR
Sbjct: 8   NEDEQYQYFDAHDDMDAAS----------------LSDSTFQY---DVWAGSPGSVKERR 48

Query: 66  SKFLKLMGFILDQ-SLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSS 124
           +KFL  MG  LD+ S  N+ D+  +S       VDR+ E+SGAVLRT GF D+   S+SS
Sbjct: 49  NKFLNWMGLSLDRFSCDNSVDVCSDS---LGGGVDRVRESSGAVLRTLGFEDEFCSSRSS 105

Query: 125 ISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVS 184
           I  ++ E  EV                   G D +V+ N+   I                
Sbjct: 106 I--EVSEFREV-------------------GLDRLVTINECQNIS--------------- 129

Query: 185 FDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSA-TL 243
            D  L      SS VQ +  R+ EE+ + V A ++VK+GWL +L +M+ I+DRHG    L
Sbjct: 130 -DSLL------SSSVQQVIQREIEEASNPVGAAKRVKKGWLSRLRSMSCIMDRHGEIHNL 182

Query: 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303
              D     G R++RVRV   +KQ +ELS+LY GQ+  AHEGSIL+MKFS DG+YLAS G
Sbjct: 183 TTNDTNPIPGARIQRVRVRQCRKQMKELSALYKGQDIQAHEGSILSMKFSPDGKYLASAG 242

Query: 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363
           EDG VR+W+V+E ER +  D+ + DP C+YFT+NHLS+L P+  +KEK+ K +SLRK+SD
Sbjct: 243 EDGIVRIWQVVEDERSNDHDIPEIDPMCIYFTVNHLSELTPLFAEKEKLSKLRSLRKTSD 302

Query: 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR 423
             CV+ PPKVFR+LEKPLHEF GHSSE+LDLSWS N +LLSSS DKTVRLW+VG D CL+
Sbjct: 303 SACVIFPPKVFRILEKPLHEFHGHSSEILDLSWSNNNYLLSSSIDKTVRLWRVGCDHCLK 362

Query: 424 VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483
           +FSHNNYVT V FNPVDDNYFISGSIDGKVRIW +  CQVVD+TDIRE+V+AVCY PDG+
Sbjct: 363 IFSHNNYVTCVQFNPVDDNYFISGSIDGKVRIWAIPGCQVVDWTDIREMVTAVCYRPDGQ 422

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527704|ref|XP_003532448.1| PREDICTED: WD repeat-containing protein 44-like [Glycine max]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/482 (52%), Positives = 321/482 (66%), Gaps = 21/482 (4%)

Query: 7   EEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRS 66
           EEEE+QF++T EE+  VSD  SDCSE   SS  +        ++ ++W    +SV++RR 
Sbjct: 28  EEEEDQFYETREELCSVSDGGSDCSESDESSSGNNGH----VTRYQVWAQNLESVHQRRL 83

Query: 67  KFLKLMGFILDQSL-MNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSS- 124
            FL+ MG   D +  M  E+L D+        +DRIT  SGAVLRTS F  +     +S 
Sbjct: 84  NFLRWMGLESDLNYSMKGEELGDQP-----CGIDRITATSGAVLRTS-FAIEEGLPSTSN 137

Query: 125 ---ISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQ 181
              + S   EA    E+   +++ AC I +   G + +V    QD     S L+  GS+Q
Sbjct: 138 QIVLDSLSDEASGSQEN---RENLACMIRNLDDGTEYIVDKLGQDGAP--STLRVLGSNQ 192

Query: 182 SVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSA 241
            +S +EF    G SS F++    R  E +R L   KRK+KRGWL+KL ++A  +  HG  
Sbjct: 193 LISLEEFQKNIGPSS-FIRRHLQRDTENTRLLGVGKRKMKRGWLRKLDSIACFVHNHGFD 251

Query: 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS 301
             K  D +      ++RVRVH  +K+ +ELSSLYT QEF AH+G ILTMKFSLDG+YLAS
Sbjct: 252 ETKCKDCDSVDRSGIQRVRVHSYRKRFKELSSLYTEQEFKAHKGVILTMKFSLDGKYLAS 311

Query: 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361
           GGEDG VRVWKVIE ER    D+ D DPS +YF IN+ S + P+DVDKEK+ KT+ LR+S
Sbjct: 312 GGEDGMVRVWKVIEDERSSELDILDNDPSNIYFKINNFSCVAPLDVDKEKLVKTEKLRRS 371

Query: 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC 421
           S+ TCV++PPK FR+  KPLHEFQGHSS+++DL+WSK GFLLSSS DKTVRLW VGIDRC
Sbjct: 372 SEATCVIVPPKTFRISAKPLHEFQGHSSDIIDLAWSKRGFLLSSSVDKTVRLWHVGIDRC 431

Query: 422 LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481
           LRVF HNNYVT V FNPV+DN+FISGSIDGKVRIWEV  C+V DY DIREIV+AVC+ PD
Sbjct: 432 LRVFYHNNYVTCVNFNPVNDNFFISGSIDGKVRIWEVVHCRVSDYIDIREIVTAVCFRPD 491

Query: 482 GK 483
           GK
Sbjct: 492 GK 493

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742407|emb|CBI34556.3| unnamed protein product [Vitis vinifera]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/488 (53%), Positives = 319/488 (65%), Gaps = 59/488 (12%)

Query: 3   GVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSS---VEHLADSVLCYSQSEIWTGYPQ 59
           G S+EEE ++FFDT EE S   D  SD S    SS   V+  +DS   Y    +W   PQ
Sbjct: 2   GSSSEEEGDRFFDTREEFS---DSASDGSVDFRSSNGVVDGDSDS-FGYG---LWIKNPQ 54

Query: 60  SVNERRSKFLKLMGFILDQSLMNAEDLE----DESRVRTQLDVDRITENSGAVLRTSGFG 115
           SVNERR KFLK M   +DQ+ + +E+ E    D    + +++ DR TENSGAVLR S   
Sbjct: 55  SVNERRDKFLKWMNLDMDQNRITSEESESESGDVCCDKIKIETDRATENSGAVLRNSVSE 114

Query: 116 DDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQ 175
           D +   Q S+S +                          G +L               L+
Sbjct: 115 DRVSSIQCSMSFR------------------------SNGEEL---------------LE 135

Query: 176 ESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARII 235
             GS++ VS +EF  T G  S  VQ    R+ EE  + VD K+KVKRGWL++LGA+A + 
Sbjct: 136 GVGSNRVVSMEEFQRTIG-LSPLVQQHLQREVEEVSNSVDMKKKVKRGWLRRLGAVACVR 194

Query: 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295
           DR G A    G    T+G + RRVRVHP +K+S+ELSSLY G+EF AH G ILTMKFSLD
Sbjct: 195 DRQGEA----GSTHATVGAKTRRVRVHPYRKRSKELSSLYKGREFAAHRGPILTMKFSLD 250

Query: 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355
           G YLASGGEDG VRVWK+IE       D+QD DPS +YFT N  S+L P+DVDKEK  K 
Sbjct: 251 GHYLASGGEDGIVRVWKIIEDGSSKEVDIQDIDPSSVYFTRND-SELTPLDVDKEKRGKK 309

Query: 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQ 415
           K L++SSD TCV++PPKVFR+LE+PLHEFQGHS ++LDLSWSK G+LLSSS DKTVRLWQ
Sbjct: 310 KRLKRSSDSTCVIIPPKVFRILEEPLHEFQGHSGDILDLSWSKKGYLLSSSTDKTVRLWQ 369

Query: 416 VGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475
           VG ++CLRVF HN+YVT V FNPVDDNYFISGSIDGKVRIWEV R +VVD+TDIR+IV+A
Sbjct: 370 VGQEQCLRVFYHNDYVTCVDFNPVDDNYFISGSIDGKVRIWEVHRHKVVDWTDIRDIVTA 429

Query: 476 VCYCPDGK 483
           VCY PDGK
Sbjct: 430 VCYRPDGK 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587633|ref|XP_002534336.1| WD-repeat protein, putative [Ricinus communis] gi|223525468|gb|EEF28046.1| WD-repeat protein, putative [Ricinus communis]

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/478 (49%), Positives = 315/478 (65%), Gaps = 24/478 (5%)

Query: 8   EEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSK 67
           EEE  FFD  ++I+ VSD  SD     S S     +S+      E+WT  P+SV ERRS+
Sbjct: 6   EEEYHFFDAHDDIASVSDAKSDIETSDSHSCAD--NSIPSSPHFEVWTKSPRSVEERRSR 63

Query: 68  FLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISS 127
           FL  M   LDQ   N   +E  S    + ++DRI E+SGAVLR S F ++   ++S++S 
Sbjct: 64  FLNWMQVGLDQR-ANGSSIEVGS---MEGEIDRIRESSGAVLRKSIFEEEFCSTRSTMSC 119

Query: 128 -KLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFD 186
               +   +LE    K++  CR   +G G  +V +D             E  +  SV+ +
Sbjct: 120 WSNNDTSNLLEELGSKENFLCREGTYGGG--MVFND-------------EVNTEHSVTAE 164

Query: 187 EFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSA-TLKP 245
           E + T GSS SF Q    R+ +E  +L+D  R  K+ WL KL ++A ++D+   A  L+ 
Sbjct: 165 ESVNTYGSSPSF-QQFIQRETDEPSNLMDIPRTAKKKWLNKLRSIACVVDKQREAEKLRH 223

Query: 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305
            D +  L  +++RV+V    K+++ELS+LY GQ+  AHEGSI TMKFS DGQYLAS GED
Sbjct: 224 DDDDALLQYKVQRVKVRQSGKRTKELSALYKGQDIQAHEGSIRTMKFSPDGQYLASAGED 283

Query: 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365
             VR+W+V+E ER +  D+ + DPSC+YFT++HLS+L P+ +DKEK  K KSLRK+SD  
Sbjct: 284 RVVRLWRVLEDERSNELDIPEIDPSCVYFTVDHLSELKPLFIDKEKTAKLKSLRKTSDSA 343

Query: 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF 425
           CVV PPKVFR+LEKP+HEF GH  E+LDLSWSK+  LLS+S DKTVRLW+VG D CLRVF
Sbjct: 344 CVVFPPKVFRILEKPVHEFHGHKGEILDLSWSKDHHLLSASEDKTVRLWRVGSDHCLRVF 403

Query: 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483
           SH+NYVT V FNPVD+NYF+SGSIDGKVRIW +  CQVVD+TDI+EIV+AVCY PDG+
Sbjct: 404 SHSNYVTCVQFNPVDNNYFMSGSIDGKVRIWAIPCCQVVDWTDIKEIVTAVCYHPDGQ 461

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	493
TAIR|locus:2169769	698	AT5G24320 "AT5G24320" [Arabido	0.742	0.524	0.458	9.1e-88
TAIR|locus:2168606	654	AT5G53500 "AT5G53500" [Arabido	0.594	0.448	0.516	8.2e-85
TAIR|locus:2019494	647	AT1G64610 "AT1G64610" [Arabido	0.630	0.480	0.526	1.3e-82
TAIR|locus:2165700	709	AT5G42010 "AT5G42010" [Arabido	0.636	0.442	0.539	2.2e-82
TAIR|locus:2153443	825	AT5G54200 "AT5G54200" [Arabido	0.454	0.271	0.506	4.3e-68
TAIR|locus:2090146	883	AT3G15470 "AT3G15470" [Arabido	0.450	0.251	0.495	1e-59
TAIR|locus:2040731	903	AT2G37670 "AT2G37670" [Arabido	0.470	0.256	0.434	3.2e-55
TAIR|locus:2181733	905	AT5G02430 "AT5G02430" [Arabido	0.503	0.274	0.440	1.8e-52
TAIR|locus:2028539	593	AT1G48870 [Arabidopsis thalian	0.235	0.195	0.560	3.1e-37
MGI|MGI:1919654	915	Wdr44 "WD repeat domain 44" [M	0.387	0.208	0.364	2.5e-28

TAIR|locus:2169769 AT5G24320 "AT5G24320" [Arabidopsis thaliana (taxid:3702)]

 Score = 818 (293.0 bits), Expect = 9.1e-88, Sum P(2) = 9.1e-88
 Identities = 175/382 (45%), Positives = 245/382 (64%)

Query:   104 NSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSD- 162
             N  AVL +    DD  FS S   S      E ++     + + C+ ++    + +V+ + 
Sbjct:    84 NESAVLMSLKSDDD-EFSSSRCDS--FSPSESVDRVV--NESLCK-EEGEVDSGMVLRNL 137

Query:   163 NDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKR 222
                D+ +I S L  S SS  VS D+ +   G       P+ +   EE R++    ++VK 
Sbjct:   138 GFVDDGDISSSLC-SLSSSPVS-DKIVKEHGEPKLLPDPMVA---EEEREVSGIMKRVKE 192

Query:   223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA 282
              WL +L    ++ ++  +     G      G R+ RV+V   KK+++ELS+L+ GQE  A
Sbjct:   193 KWLSRL---YKVRNKRSAGGDDNGGEVAVCGSRIERVKVKEYKKEAKELSALFKGQEIQA 249

Query:   283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
             HEG+IL MKFS DG+YLAS GEDG +RVW V+E ER +  DV   DPSC+YF ++ LS+L
Sbjct:   250 HEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDERCEEHDVPKIDPSCIYFEVSKLSEL 309

Query:   343 IPIDVDKEKIDKT-KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF 401
              P+ V+K+ I  +  S RK+++  CV++PPK+FR+L+KPLHEF GHS ++LD+SWSKN  
Sbjct:   310 RPVAVEKDGITGSLMSPRKTTESACVIIPPKIFRVLDKPLHEFLGHSGDILDISWSKNNR 369

Query:   402 LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461
             LLS+S D +VRLWQ+G + CL +FSHNNYVTSV FNPVDD++FISGSIDGKVRIW   +C
Sbjct:   370 LLSASVDNSVRLWQIGCEDCLGIFSHNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQC 429

Query:   462 QVVDYTDIREIVSAVCYCPDGK 483
             QVVD+ D R IV+AVCY PDG+
Sbjct:   430 QVVDWADARGIVTAVCYQPDGQ 451

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

TAIR|locus:2168606 AT5G53500 "AT5G53500" [Arabidopsis thaliana (taxid:3702)]

 Score = 794 (284.6 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
 Identities = 159/308 (51%), Positives = 216/308 (70%)

Query:   194 SSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRH--GSATLKPGDHELT 251
             SSS + Q    ++ E+ R++       K+GWL +L +M    D +      ++       
Sbjct:   135 SSSRYCQV---KETEKQRNIAGLVTSFKKGWLSRLRSMGCTADTNIESGGRMRASSG--- 188

Query:   252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311
              G  + RV+V   KKQ++ELS+LY  Q+  AH+G+IL MKFS DG++LAS GEDG VRVW
Sbjct:   189 YGDVISRVKVKHCKKQAKELSALYQSQDIKAHDGAILAMKFSNDGKFLASSGEDGIVRVW 248

Query:   312 KVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT-KSLRKSSDLTCVV 368
             KV+E +  RL    + + DPSC+YF +N LSQL P+ V++EK  KT +S RK+SD  CVV
Sbjct:   249 KVVEDKKSRLRRDCLNEIDPSCMYFEVNDLSQLKPVLVNEEKPKKTTESFRKTSDSACVV 308

Query:   369 LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHN 428
              PPKVFR++EKPL+EF+GH+ EVLD+SWSK+ +LLS+S DKTVRLW+VG + CL VF+HN
Sbjct:   309 FPPKVFRIMEKPLYEFRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCLGVFAHN 368

Query:   429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKV---- 484
             +YVTSV FNPV++NYF+SGSIDGKVRIW +  C VVD+ D+++I+SAVCY PDG+     
Sbjct:   369 SYVTSVQFNPVNENYFMSGSIDGKVRIWNISGCSVVDWADLKDIISAVCYRPDGQGGIIG 428

Query:   485 RQNSACNF 492
               N +C F
Sbjct:   429 SLNGSCRF 436

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2019494 AT1G64610 "AT1G64610" [Arabidopsis thaliana (taxid:3702)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 171/325 (52%), Positives = 222/325 (68%)

Query:   160 VSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRK 219
             VS +D D+  + +R   S S+ ++       +   S SF     S   +  RD  D  +K
Sbjct:   106 VSSSDTDDQTLLARNDASSSTSTMPGGLSESSSSKSGSFGDFHNSPFSQ--RD--DLLKK 161

Query:   220 VKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQE 279
               + WLKKLG +  +++     +++   H++       RV+ H  KKQ +ELSS+   QE
Sbjct:   162 GAKSWLKKLGVLTHVLESMDCESVRTQLHQVA------RVQTH--KKQFKELSSMCIDQE 213

Query:   280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL 339
             F AH+GSIL MKFS DG+Y+AS GED  VRVW + E ER D ++V + D S +YF +N  
Sbjct:   214 FSAHDGSILAMKFSPDGKYIASAGEDCVVRVWSITEEERTDTYEVAEVD-SGVYFGMNQR 272

Query:   340 SQLIPIDVDKEKIDKTKS-LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398
             SQ+ P+ ++ EK +K  S LRKSSD TCVVLPP +F + EKPLHEF+GH  E+LDLSWS+
Sbjct:   273 SQIEPLKINNEKTEKKSSFLRKSSDSTCVVLPPTIFSISEKPLHEFKGHIGEILDLSWSE 332

Query:   399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
              G+LLSSS D+TVRLW+VG D CLR F+HNN+VT VAFNPVDDNYFISGSIDGKVRIW+V
Sbjct:   333 KGYLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV 392

Query:   459 RRCQVVDYTDIREIVSAVCYCPDGK 483
              RC+VVDYTDIR+IV+AVCY PD K
Sbjct:   393 TRCRVVDYTDIRDIVTAVCYRPDAK 417

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS;RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2165700 AT5G42010 "AT5G42010" [Arabidopsis thaliana (taxid:3702)]

 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 176/326 (53%), Positives = 222/326 (68%)

Query:   163 NDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSS-SFVQPLPSRQDEESRDLVDAKRKVK 221
             N    I+ +  L    SS S S  E L    SS       LP+     SR   ++ +K  
Sbjct:   141 NRAKNIDDQILLTRDYSSNSSSIAEGLSESDSSRFDSYGDLPN--SPMSR-YEESPKKGA 197

Query:   222 RGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV-RVHPVKKQSRELSSLYTGQEF 280
             +GWLKKLG +  ++D+    T    D E T     R++ RV   KKQ +ELSSL  GQEF
Sbjct:   198 KGWLKKLGVLTHVLDKTEECT----DGESTRSSIRRQLTRVQSFKKQFKELSSLCVGQEF 253

Query:   281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG-FDVQDTDPSCLYFTINHL 339
              AH+GSI+ MKFS DG+YLAS GED  VRVW +IE ER D  F+V ++D SC+YF +N  
Sbjct:   254 SAHDGSIVVMKFSHDGKYLASAGEDCVVRVWNIIEDERRDNEFEVAESDSSCVYFGMNDK 313

Query:   340 SQLIPIDVDKEKIDKTKSL-RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398
             SQ+ P+  + EKI+K++ L RK S+ TC VLP KVF + E P HEF+GH+ E+LDLSWS+
Sbjct:   314 SQIEPLKTENEKIEKSRGLLRKKSESTCAVLPSKVFSISETPQHEFRGHTGEILDLSWSE 373

Query:   399 NGFLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
              GFLLSSS D+TVRLW+VG  D C+RVFSH ++VT VAFNPVDDNYFISGSIDGKVRIW+
Sbjct:   374 KGFLLSSSVDETVRLWRVGSSDECIRVFSHKSFVTCVAFNPVDDNYFISGSIDGKVRIWD 433

Query:   458 VRRCQVVDYTDIREIVSAVCYCPDGK 483
             V + +VVDYTDIR+IV+A+CY PDGK
Sbjct:   434 VSQFRVVDYTDIRQIVTALCYRPDGK 459

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2153443 AT5G54200 "AT5G54200" [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 4.3e-68, Sum P(3) = 4.3e-68
 Identities = 116/229 (50%), Positives = 154/229 (67%)

Query:   258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317
             RV+V    K  +EL++L+  QE  AH+GSI ++KFSLDG+YLAS GED  +++WKV+E E
Sbjct:   337 RVKVRQYGKSCKELTALFKSQEIQAHKGSIWSIKFSLDGRYLASAGEDCVIQIWKVVESE 396

Query:   318 R---LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374
             R   L   D Q+     L+   N   +  P+ +  ++  +T   RKS  L  V++P  VF
Sbjct:   397 RKGELLSMDKQEDGSINLFLLANGSPE--PVSMSPKRRGRTSFSRKSVSLDNVLVPEAVF 454

Query:   375 RLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434
              L EKP+  F GH  +VLDLSWSK+  LLSSS DKTVRLW +    CL+VFSH++YVT +
Sbjct:   455 GLSEKPVCSFVGHLDDVLDLSWSKSQHLLSSSMDKTVRLWDLSSKTCLKVFSHSDYVTCI 514

Query:   435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483
              FNPVDDNYFISGS+D KVRIW +   QVVD+ D+ E+V+A CY PDG+
Sbjct:   515 QFNPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHEMVTAACYTPDGQ 563

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2090146 AT3G15470 "AT3G15470" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 1.0e-59, Sum P(2) = 1.0e-59
 Identities = 112/226 (49%), Positives = 148/226 (65%)

Query:   258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317
             RVRV    K S+EL++LY  QE  AH GSI ++KFSLDG+YLAS GED  + +W+V+E E
Sbjct:   387 RVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFSLDGKYLASAGEDCIIHIWQVVEAE 446

Query:   318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377
             +  G  + D  P  L    N   +  P  +   +  +T   RKS  L  + +P  +F L 
Sbjct:   447 K-KGELLLDR-PELLLLATNGSPE--PTTMSPRRRGRTSISRKSLSLENIFVPDSLFGLS 502

Query:   378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437
             EKP   FQGH  +VLDL+WSK+  LLSSS DKTVRLW +    CL+VFSH++YVT + FN
Sbjct:   503 EKPFCSFQGHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQFN 562

Query:   438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483
             PVDD YFISGS+D KVR+W +   QVVD+ D+ E+V++ CY PDG+
Sbjct:   563 PVDDRYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDGQ 608

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2040731 AT2G37670 "AT2G37670" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 3.2e-55, Sum P(3) = 3.2e-55
 Identities = 106/244 (43%), Positives = 154/244 (63%)

Query:   244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303
             K  DH+   G+    V+V P  K  +ELS+L+  QE  AHEG++ T+KFS D  YLASGG
Sbjct:   366 KGKDHKH--GKANEWVKVRPTGKSYKELSALHMCQEIQAHEGAVWTIKFSQDAHYLASGG 423

Query:   304 EDGTVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360
              D  + VW+V E E +   +G  +    PS    + N ++      V+K+K  K  S R+
Sbjct:   424 ADRVIHVWEVQECELMSMNEG-SLTPIHPSLCDSSGNEITV-----VEKKKKGKGSSGRR 477

Query:   361 SSDLTCVV-LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
              + +   V +P  VF   +KP+   +GH   +LDLSWSK+  LLSSS DKTVRLW +   
Sbjct:   478 HNHIPDYVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQLLLSSSMDKTVRLWDIETK 537

Query:   420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
              CL++F+HN+YVT + F+PVD+NYF+SGS+D K+RIW ++   VV+++D+ E+V+A CY 
Sbjct:   538 TCLKLFAHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVEWSDLHEMVTAACYT 597

Query:   480 PDGK 483
             PDG+
Sbjct:   598 PDGQ 601

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2181733 AT5G02430 "AT5G02430" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
 Identities = 111/252 (44%), Positives = 152/252 (60%)

Query:   236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295
             D  GS T  P   E    Q  + V+V    K  ++LS+L+  QE  AH+G I TMKFS D
Sbjct:   363 DSTGSGTSSPKVAEKNNEQANQWVKVRHSGKSHKDLSALHMCQEIQAHQGGIWTMKFSPD 422

Query:   296 GQYLASGGEDGTVRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLS-QLIPIDVDKEKI 352
                LAS GED  + VW+V E E   ++   +    PS    T          +  DK+K 
Sbjct:   423 SHLLASAGEDCAIHVWEVQECEIMSMNEGSLTPIHPSMSGSTDKSSEGDAAEVSQDKKKK 482

Query:   353 DKTKSLRKSSDLTCVVLPPK-VFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTV 411
              KT   +K + +   V  P+ VF L +KP+  F GH  +VLDLSWS++  LLSSS DKTV
Sbjct:   483 GKTSMSKKGNQIPDYVHAPETVFSLSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTV 542

Query:   412 RLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471
             RLW +    CL++F+HN+YVT V FNP+D++YFISGS+D K+RIW +   QVV++ D++E
Sbjct:   543 RLWDIETQSCLKLFAHNDYVTCVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKE 602

Query:   472 IVSAVCYCPDGK 483
             +V+AVCY PDG+
Sbjct:   603 MVTAVCYTPDGQ 614

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2028539 AT1G48870 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
 Identities = 65/116 (56%), Positives = 83/116 (71%)

Query:   367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS 426
             V+ P K F + E P  E  GH+ +VLDL+WS +  LLS+S DKTVRLW+ G D+CL VF 
Sbjct:   251 VLFPQKAFHIEETPFQELYGHTGDVLDLAWSDSNLLLSASKDKTVRLWRTGCDQCLHVFH 310

Query:   427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDG 482
             HNNYVT V FNPV+ N F SGSIDGK RIW +   +VV +TD+R+ +SA+ Y P+G
Sbjct:   311 HNNYVTCVEFNPVNKNNFASGSIDGKARIWGLSEERVVAWTDVRDSISAISYQPNG 366

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

MGI|MGI:1919654 Wdr44 "WD repeat domain 44" [Mus musculus (taxid:10090)]

 Score = 336 (123.3 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 75/206 (36%), Positives = 120/206 (58%)

Query:   283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
             H G++ TMKFS  G+ LAS G+D  VR+W +      + FD  +     +    N   ++
Sbjct:   512 HMGAVWTMKFSHCGRLLASAGQDNIVRIWAL-----KNAFDYFNN----MRMKYNTEGRV 562

Query:   343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPP--KVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400
              P    +E +  +KS       +     P  K     ++P  +++GH++++LDLSWSKN 
Sbjct:   563 SP-SPSQESLSSSKSDTDMGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNY 621

Query:   401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
             FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+DGK+R+W +  
Sbjct:   622 FLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPD 681

Query:   461 CQVVDYTDI---REIVSAVCYCPDGK 483
              +V  + ++    ++++A  +C +GK
Sbjct:   682 KKVALWNEVDGQTKLITAANFCQNGK 707

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005874 "microtubule" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=ISO

GO:0030334 "regulation of cell migration" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	493
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-28
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	5e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-07
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	6e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  112 bits (281), Expect = 8e-28
 Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 26/210 (12%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
           +    H G +  + FS DG+ LA+G  DGT++VW +                  L     
Sbjct: 3   RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDL-------------ETGELLRTLKG 49

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL-LEKPLHEFQGHSSEVLDLSW 396
           H   +  +       D T     SSD T      +++ L   + +    GH+S V  +++
Sbjct: 50  HTGPVRDVAASA---DGTYLASGSSDKTI-----RLWDLETGECVRTLTGHTSYVSSVAF 101

Query: 397 SKNGFLL-SSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
           S +G +L SSS DKT+++W V   +CL     H ++V SVAF+P D  +  S S DG ++
Sbjct: 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIK 160

Query: 455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGK 483
           +W++R  + V   T     V++V + PDG+
Sbjct: 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGE 190

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  108 bits (272), Expect = 2e-26
 Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 30/213 (14%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
           +    H   + ++ FS DG+ L+S   D T++VW V                 CL     
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-------------TGKCLTTLRG 133

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL-LEKPLHEFQGHSSEVLDLSW 396
           H        V+        +   SS     +   K++ L   K +    GH+ EV  +++
Sbjct: 134 HTD-----WVNSVAFSPDGTFVASSSQDGTI---KLWDLRTGKCVATLTGHTGEVNSVAF 185

Query: 397 SKNGF-LLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
           S +G  LLSSS+D T++LW +   +CL     H N V SVAF+P D     SGS DG +R
Sbjct: 186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIR 244

Query: 455 IWEVRRCQVVDYTDIR---EIVSAVCYCPDGKV 484
           +W++R  + V    +      V+++ + PDGK 
Sbjct: 245 VWDLRTGECV--QTLSGHTNSVTSLAWSPDGKR 275

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 26/205 (12%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H G +  +  S DG YLASG  D T+R+W +   E +       +  S +    +   ++
Sbjct: 50  HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV--AFSPDGRI 107

Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-EKPLHEFQGHSSEVLDLSWSKNG- 400
           +                 S D T      KV+ +   K L   +GH+  V  +++S +G 
Sbjct: 108 L--------------SSSSRDKTI-----KVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148

Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
           F+ SSS D T++LW +   +C+   + H   V SVAF+P D    +S S DG +++W++ 
Sbjct: 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLS 207

Query: 460 RCQVV-DYTDIREIVSAVCYCPDGK 483
             + +         V++V + PDG 
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGY 232

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 29/185 (15%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
                H   + ++ FS DG ++AS  +DGT+++W +                 C+     
Sbjct: 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL-------------RTGKCVATLTG 175

Query: 338 HLSQL--IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGHSSEVLDL 394
           H  ++  +    D EK+  +     SSD T      K++ L   K L   +GH + V  +
Sbjct: 176 HTGEVNSVAFSPDGEKLLSS-----SSDGTI-----KLWDLSTGKCLGTLRGHENGVNSV 225

Query: 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK 452
           ++S +G  L S S D T+R+W +    C++  S H N VTS+A++P D     SGS DG 
Sbjct: 226 AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGT 284

Query: 453 VRIWE 457
           +RIW+
Sbjct: 285 IRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 83.9 bits (208), Expect = 6e-18
 Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 4/110 (3%)

Query: 378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVA 435
            + L   +GH+  V D++ S +G +L S S+DKT+RLW +    C+R    H +YV+SVA
Sbjct: 41  GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100

Query: 436 FNPVDDNYFISGSIDGKVRIWEVRRCQ-VVDYTDIREIVSAVCYCPDGKV 484
           F+P D     S S D  +++W+V   + +       + V++V + PDG  
Sbjct: 101 FSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF 149

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 77.4 bits (189), Expect = 4e-15
 Identities = 61/236 (25%), Positives = 100/236 (42%), Gaps = 29/236 (12%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI 336
           +    H  S+ ++ FS DG+ LASG   DGT+++W +   + L          S L F+ 
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP 208

Query: 337 NHLSQLIPIDVD--------KEKIDKTKSLRKSSDLTCVVLPP--------------KVF 374
           +    +     D                +L   SD       P              +++
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW 268

Query: 375 RL--LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HN 428
            L      L    GHSS VL +++S +G  L S S+D TVRLW +   + L   +   H 
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE 328

Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKV 484
             V+S++F+P        GS DG +R+W++R  + +   +    V +V + PDG+V
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRV 384

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 69.7 bits (169), Expect = 1e-12
 Identities = 59/254 (23%), Positives = 99/254 (38%), Gaps = 33/254 (12%)

Query: 264 VKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER-LDGF 322
           +   S       +      HE SI ++ FS DG+ L SG  DGT+++W +   E+ +   
Sbjct: 45  LLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL 104

Query: 323 DVQDTDPSCLYFTINHLSQLIPI------------DVDKEKIDKTKSLRKSSDLTCVVLP 370
           +             +     I +            D+             S  +T +   
Sbjct: 105 EGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS 164

Query: 371 P---------------KVFRLLE-KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVR 412
           P               K++ L   KPL    GH+  V  L++S +G   + S S+D T+R
Sbjct: 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Query: 413 LWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-- 470
           LW +   + LR     +  + V+    D +   SGS DG +R+W++R    +  T     
Sbjct: 225 LWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284

Query: 471 EIVSAVCYCPDGKV 484
             V +V + PDGK+
Sbjct: 285 SSVLSVAFSPDGKL 298

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 23/148 (15%)

Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329
           +L +         H G + ++ FS DG+ L S   DGT+++W           D+     
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW-----------DLSTGKC 211

Query: 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-EKPLHEFQGHS 388
                   H + +  +            L  S      +   +V+ L   + +    GH+
Sbjct: 212 LGTL--RGHENGVNSVAFSP-----DGYLLASGSEDGTI---RVWDLRTGECVQTLSGHT 261

Query: 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQ 415
           + V  L+WS +G  L S SAD T+R+W 
Sbjct: 262 NSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.4 bits (160), Expect = 9e-12
 Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN 437
                +GH+  V  +++S +G  L + S D T+++W +     LR    H   V  VA +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKV 484
             D  Y  SGS D  +R+W++   + V   T     VS+V + PDG++
Sbjct: 61  A-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 60.9 bits (146), Expect = 7e-10
 Identities = 60/219 (27%), Positives = 93/219 (42%), Gaps = 27/219 (12%)

Query: 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304
           P    L  G     +R+  ++  S  L +L        H  S+L++ FS DG+ LASG  
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLS------GHSSSVLSVAFSPDGKLLASGSS 304

Query: 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364
           DGTVR+W           D++            H   +  +    +          S D 
Sbjct: 305 DGTVRLW-----------DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG--SDDG 351

Query: 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLR 423
           T      +++ L      +     S VL +S+S +G ++SS S D TVRLW +     LR
Sbjct: 352 TI-----RLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR 406

Query: 424 VF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461
               H + VTS+ F+P D     SGS D  +R+W+++  
Sbjct: 407 NLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLW 414
            K L   +GH+  V  +++S +G  L S S D TVR+W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312
           +    H G + ++ FS DG  LASG +DGTVRVW 
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312
           +    H G + ++ FS DG+YLASG +DGT+++W 
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLW 414
           + L   +GH+  V  +++S +G +L S S D T++LW
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
             L+    H   VTSVAF+P D  Y  SGS DG +++W+
Sbjct: 3   ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.4 bits (108), Expect = 8e-07
 Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
           + LR    H   VTSVAF+P D N   SGS DG VR+W
Sbjct: 2   KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 380 PLHEFQGHSSEVLDLSW--SKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF 436
           P+   QGH+ +V  +S+  S    L S+ AD  V +W V   + + V   H++ +TS+ +
Sbjct: 117 PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW 176

Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQVV 464
           N +D +   + S D K+ I + R   +V
Sbjct: 177 N-LDGSLLCTTSKDKKLNIIDPRDGTIV 203

Length = 493

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.2 bits (100), Expect = 3e-04
 Identities = 42/161 (26%), Positives = 63/161 (39%), Gaps = 23/161 (14%)

Query: 280 FLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINH 338
              HEG + ++ FS DG  L SGG +DGT+R+W              D        T+  
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW--------------DLRTGKPLKTLEG 369

Query: 339 LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398
            S ++ +       D       S+D T  +            L    GH+S V  L +S 
Sbjct: 370 HSNVLSVSF---SPDGRVVSSGSTDGTVRLWDLSTG----SLLRNLDGHTSRVTSLDFSP 422

Query: 399 NG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP 438
           +G  L S S+D T+RLW +        FS +  V +   + 
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSD 463

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 17/93 (18%)

Query: 380 PLHEFQGHSSEVLDLSWSK--NGFLLSSSADKTVRLWQVGID----------RCLRVFSH 427
           P+ + +GH+S +LDL ++   +  L S S D T+R+W++  +          +C+ +  H
Sbjct: 66  PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI-LKGH 124

Query: 428 NNYVTSVAFNPVDDNYFI--SGSIDGKVRIWEV 458
              ++ + +NP+  NY+I  S   D  V IW++
Sbjct: 125 KKKISIIDWNPM--NYYIMCSSGFDSFVNIWDI 155

Length = 568

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	493
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.98
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.96
KOG0286	343	consensus G-protein beta subunit [General function	99.96
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0286	343	consensus G-protein beta subunit [General function	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.95
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.95
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.94
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.94
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.94
KOG0645	312	consensus WD40 repeat protein [General function pr	99.94
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.94
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.94
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.94
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.94
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.94
KOG0266	456	consensus WD40 repeat-containing protein [General	99.93
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0266	456	consensus WD40 repeat-containing protein [General	99.93
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.93
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.92
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.92
PLN00181	793	protein SPA1-RELATED; Provisional	99.92
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
PTZ00421	493	coronin; Provisional	99.92
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.91
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.91
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.91
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.91
KOG0643	327	consensus Translation initiation factor 3, subunit	99.9
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.9
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.9
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.9
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.9
PTZ00421	493	coronin; Provisional	99.89
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.89
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.89
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.89
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.89
PTZ00420	568	coronin; Provisional	99.89
PTZ00420	568	coronin; Provisional	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.88
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.88
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.88
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.88
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.88
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.88
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.88
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.88
KOG0289	506	consensus mRNA splicing factor [General function p	99.88
KOG0296	399	consensus Angio-associated migratory cell protein	99.88
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.88
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.87
KOG0641	350	consensus WD40 repeat protein [General function pr	99.87
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.87
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.87
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.87
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.87
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.85
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.85
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.85
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.85
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.85
KOG2096	420	consensus WD40 repeat protein [General function pr	99.85
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.85
KOG0289	506	consensus mRNA splicing factor [General function p	99.84
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.84
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.84
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.83
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.83
PLN00181	793	protein SPA1-RELATED; Provisional	99.83
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.83
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.82
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG0643	327	consensus Translation initiation factor 3, subunit	99.82
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.82
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.81
KOG0639	705	consensus Transducin-like enhancer of split protei	99.81
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.81
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.81
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.81
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.81
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.8
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.8
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.8
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.8
KOG1273	405	consensus WD40 repeat protein [General function pr	99.79
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.79
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.79
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.78
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.78
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.78
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.78
KOG4328	498	consensus WD40 protein [Function unknown]	99.78
KOG1274	933	consensus WD40 repeat protein [General function pr	99.78
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.77
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.77
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.77
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.76
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
KOG1539	910	consensus WD repeat protein [General function pred	99.76
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.76
KOG1274	933	consensus WD40 repeat protein [General function pr	99.75
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.75
KOG2055	514	consensus WD40 repeat protein [General function pr	99.75
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.75
KOG2048	691	consensus WD40 repeat protein [General function pr	99.74
KOG0639	705	consensus Transducin-like enhancer of split protei	99.74
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.74
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.74
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.74
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.73
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.73
KOG0646	476	consensus WD40 repeat protein [General function pr	99.73
KOG2096	420	consensus WD40 repeat protein [General function pr	99.73
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.7
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.7
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.69
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.69
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.68
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.68
KOG0267	825	consensus Microtubule severing protein katanin p80	99.68
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.67
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.66
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.66
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.66
KOG1273	405	consensus WD40 repeat protein [General function pr	99.65
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.65
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.65
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.65
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.65
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.65
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.65
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.64
KOG0649	325	consensus WD40 repeat protein [General function pr	99.64
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.64
KOG1539	910	consensus WD repeat protein [General function pred	99.63
KOG2048	691	consensus WD40 repeat protein [General function pr	99.63
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.63
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.62
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.61
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.6
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.59
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.59
KOG1188	376	consensus WD40 repeat protein [General function pr	99.59
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.56
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.55
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.55
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.55
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.55
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.54
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.54
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.53
KOG4328	498	consensus WD40 protein [Function unknown]	99.53
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.52
KOG1310	758	consensus WD40 repeat protein [General function pr	99.52
KOG4227	609	consensus WD40 repeat protein [General function pr	99.51
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.51
KOG2055	514	consensus WD40 repeat protein [General function pr	99.51
COG2319	466	FOG: WD40 repeat [General function prediction only	99.5
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.5
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.49
KOG2139	445	consensus WD40 repeat protein [General function pr	99.47
COG2319	466	FOG: WD40 repeat [General function prediction only	99.45
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.45
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.44
PRK01742	429	tolB translocation protein TolB; Provisional	99.43
KOG1310	758	consensus WD40 repeat protein [General function pr	99.43
KOG1963	792	consensus WD40 repeat protein [General function pr	99.41
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.41
KOG4227	609	consensus WD40 repeat protein [General function pr	99.41
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.4
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.4
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.38
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.38
KOG0649	325	consensus WD40 repeat protein [General function pr	99.37
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.37
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.36
PRK11028	330	6-phosphogluconolactonase; Provisional	99.36
PRK05137	435	tolB translocation protein TolB; Provisional	99.35
PRK04922	433	tolB translocation protein TolB; Provisional	99.35
KOG1188	376	consensus WD40 repeat protein [General function pr	99.35
PRK03629	429	tolB translocation protein TolB; Provisional	99.35
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.33
KOG1963	792	consensus WD40 repeat protein [General function pr	99.33
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.32
PRK02889	427	tolB translocation protein TolB; Provisional	99.32
PRK11028	330	6-phosphogluconolactonase; Provisional	99.28
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.28
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.27
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.27
PRK05137	435	tolB translocation protein TolB; Provisional	99.26
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.25
KOG2321	703	consensus WD40 repeat protein [General function pr	99.25
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.25
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.22
PRK01742	429	tolB translocation protein TolB; Provisional	99.21
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.19
PRK03629	429	tolB translocation protein TolB; Provisional	99.19
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.17
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.17
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.14
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.14
PRK04922	433	tolB translocation protein TolB; Provisional	99.13
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.13
KOG2321	703	consensus WD40 repeat protein [General function pr	99.13
KOG2139	445	consensus WD40 repeat protein [General function pr	99.13
KOG1334	559	consensus WD40 repeat protein [General function pr	99.13
PRK00178	430	tolB translocation protein TolB; Provisional	99.12
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.11
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.1
KOG4547	541	consensus WD40 repeat-containing protein [General	99.07
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.07
PRK04792	448	tolB translocation protein TolB; Provisional	99.06
PRK02889	427	tolB translocation protein TolB; Provisional	99.06
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.06
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.06
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.02
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.01
PRK01029	428	tolB translocation protein TolB; Provisional	98.94
KOG1334	559	consensus WD40 repeat protein [General function pr	98.93
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.93
PRK04792	448	tolB translocation protein TolB; Provisional	98.92
PRK00178	430	tolB translocation protein TolB; Provisional	98.9
KOG2315	566	consensus Predicted translation initiation factor	98.89
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.88
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.88
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.86
KOG2314	698	consensus Translation initiation factor 3, subunit	98.86
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.85
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.83
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.83
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.82
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.82
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.79
PRK01029	428	tolB translocation protein TolB; Provisional	98.74
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.73
KOG2315	566	consensus Predicted translation initiation factor	98.71
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.68
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.67
PRK04043	419	tolB translocation protein TolB; Provisional	98.66
COG4946	668	Uncharacterized protein related to the periplasmic	98.6
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.58
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.58
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.57
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.53
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.53
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.5
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.49
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.48
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.46
KOG4547	541	consensus WD40 repeat-containing protein [General	98.45
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.45
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.43
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.43
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.38
KOG2695	425	consensus WD40 repeat protein [General function pr	98.37
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.35
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.32
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.3
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.3
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.23
KOG2695	425	consensus WD40 repeat protein [General function pr	98.22
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.22
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.21
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.21
PRK04043	419	tolB translocation protein TolB; Provisional	98.18
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.17
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.12
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.1
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.03
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.01
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.0
COG4946	668	Uncharacterized protein related to the periplasmic	97.98
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.98
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.95
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.92
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.85
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.83
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.82
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.82
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.82
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.81
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.81
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.79
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.74
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.69
KOG2314	698	consensus Translation initiation factor 3, subunit	97.67
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.63
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.6
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.59
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.58
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.43
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.42
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.4
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.38
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.37
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.3
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.27
KOG3621	726	consensus WD40 repeat-containing protein [General	97.19
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.18
PRK02888	635	nitrous-oxide reductase; Validated	97.13
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.11
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.1
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.06
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.03
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.03
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.03
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.03
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.01
KOG3621	726	consensus WD40 repeat-containing protein [General	97.0
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.95
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.94
PRK02888	635	nitrous-oxide reductase; Validated	96.93
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.87
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.85
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.82
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.81
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.8
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.74
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.71
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.71
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.61
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.59
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.56
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.55
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.5
COG3391	381	Uncharacterized conserved protein [Function unknow	96.33
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.97
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.93
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.89
KOG2395	644	consensus Protein involved in vacuole import and d	95.88
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.87
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.85
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.85
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.78
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.76
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.68
KOG1008	783	consensus Uncharacterized conserved protein, conta	95.52
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.1
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.0
KOG2395	644	consensus Protein involved in vacuole import and d	94.91
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.58
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.46
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.35
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.32
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.3
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.3
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.21
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.03
PRK13616	591	lipoprotein LpqB; Provisional	93.99
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.84
COG3391	381	Uncharacterized conserved protein [Function unknow	93.81
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.75
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.71
PRK13616	591	lipoprotein LpqB; Provisional	93.67
KOG2444	238	consensus WD40 repeat protein [General function pr	93.62
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.62
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.59
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.45
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.3
KOG2444	238	consensus WD40 repeat protein [General function pr	92.85
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	92.81
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.77
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.75
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	92.6
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	91.6
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.48
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.11
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	91.0
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	90.93
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	90.62
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.28
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.27
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.27
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.24
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	89.98
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	89.81
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	89.64
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	89.29
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.17
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	89.05
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.42
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	88.4
PHA02713	557	hypothetical protein; Provisional	88.18
PF14727	418	PHTB1_N: PTHB1 N-terminus	87.95
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	87.86
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	87.66
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	87.45
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.02
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	86.77
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	86.75
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	85.89
PHA03098	534	kelch-like protein; Provisional	85.83
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	85.34
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	84.98
KOG2247	615	consensus WD40 repeat-containing protein [General	84.28
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	84.25
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	83.96
COG5167	776	VID27 Protein involved in vacuole import and degra	83.74
KOG2377	657	consensus Uncharacterized conserved protein [Funct	83.49
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	82.49
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	82.48
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	82.17
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	82.13
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	81.04
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	80.56
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	80.22
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	80.15

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-52  Score=427.50  Aligned_cols=437  Identities=42%  Similarity=0.693  Sum_probs=310.9

Q ss_pred             CCCCCcccccccccccccccccCCCCCCCCCCCCCCcccccccccccCCccccccCCCCChHHHHHHHHHHhccccccc-
Q 011126            1 MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQS-   79 (493)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (493)
                      |+.+.+|| ||+|||+.|+++.                       .    |+||+..|+||.|||+|||++||  |+.. 
T Consensus         1 ~~~~~~ee-~~~f~~~~~~~~~-----------------------~----~~~w~~~p~sv~err~~~l~~mg--ls~~~   50 (712)
T KOG0283|consen    1 MGAPGEEE-EDRFFDASERVSP-----------------------D----YDLWTSSPGSVSERRRKFLNGMG--LSSKK   50 (712)
T ss_pred             CCCccccc-cccccccccccCc-----------------------c----hhhhhcCccchhHHHHHHhhhhc--ccccc
Confidence            55666644 4999999999961                       0    99999999999999999999999  6643 


Q ss_pred             cccccCCC-cccccccccccccccccCCceeccCCCCCCcccccCCCCccCCCCccccccccccCCcceeeeecCCCcee
Q 011126           80 LMNAEDLE-DESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADL  158 (493)
Q Consensus        80 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~g~~~  158 (493)
                      .+...++. ..+....+.++.-...  ..|.....-..+..+ .+|....+             .-..+..  ++.|.++
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~-~~s~~~~~-------------~~~~~~~--~~~~~e~  112 (712)
T KOG0283|consen   51 TLSRSETVDRLSSSSVESNVDESNH--NSVEDTDSEQCRPSS-SSSKSRVS-------------QSSSSIE--LDTGDEF  112 (712)
T ss_pred             ccccccccccccccccccccccccc--ccccccccccCCccc-cccccccc-------------cccccee--eccccee
Confidence            23222211 1111111111100000  001000000000001 11111100             0011111  6899999


Q ss_pred             EEccCCCchhhhhccccccCCCcccccccccCCCCCCccccccCCcccccc--------ccchhh-----hhhhhccccc
Q 011126          159 VVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEE--------SRDLVD-----AKRKVKRGWL  225 (493)
Q Consensus       159 v~~~~~~~~~~~~~~lr~v~~~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~--------~~~~~~-----~~~~~k~~w~  225 (493)
                      ++.+...+++++.  +.+++.+..+.+++|+...+.++. +.+++.++..+        .....+     ..++....|+
T Consensus       113 ~v~e~~~~~~~~~--~sd~~~~~~~~~e~~e~~~g~~~~-v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l  189 (712)
T KOG0283|consen  113 SVSENPEDGSVNR--LSDVGTGASSTLEELESSPGESSR-VKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWL  189 (712)
T ss_pred             eEeeccCcccccc--ccCCCcccccccccccCCcCcccc-hhhhhhhcccccchhhcccccccccccccchhhhhhhhhh
Confidence            9999999999987  899999999999999999987887 88887765442        111111     1333445588


Q ss_pred             cccCceeeeeccccc---ceeccCCCe-----E--EeeecC--------CeEEEEECCCccccccccccceeee-cccCC
Q 011126          226 KKLGAMARIIDRHGS---ATLKPGDHE-----L--TLGQRM--------RRVRVHPVKKQSRELSSLYTGQEFL-AHEGS  286 (493)
Q Consensus       226 ~~~~~~~~~~~~~~~---~~fsp~g~~-----l--asgs~d--------g~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~  286 (493)
                      +.++.+.+..+....   ..+..+..-     +  .++..+        ..+++-...+..+++..++..|+++ +|.++
T Consensus       190 ~~~k~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~ga  269 (712)
T KOG0283|consen  190 KSLKVVAHSLSSLSENRRSRFDSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGA  269 (712)
T ss_pred             hhccccccccccccccccccccccchhcccccccccccccccccccCCcceEEecccCCCcccceeeEEeeccccccCCc
Confidence            888777666554311   111111111     1  111111        5788888888999999999999999 99999


Q ss_pred             EEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccC-ccccceeeeecCCCce
Q 011126          287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK-EKIDKTKSLRKSSDLT  365 (493)
Q Consensus       287 I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~  365 (493)
                      |++|+|++||+|||+||+||.||||.+...+.   +........++.+.......+-+..... ................
T Consensus       270 Iw~mKFS~DGKyLAsaGeD~virVWkVie~e~---~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~  346 (712)
T KOG0283|consen  270 IWAMKFSHDGKYLASAGEDGVIRVWKVIESER---MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP  346 (712)
T ss_pred             EEEEEeCCCCceeeecCCCceEEEEEEeccch---hcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence            99999999999999999999999999976554   3333344445555444444433333333 2222333344455555


Q ss_pred             EEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEE
Q 011126          366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (493)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~  445 (493)
                      ++..+.+.+.+.++|++.+.||.+.|.+|+|+.+++|+++++|+|||||++....|+++|.|.++||||+|+|.|.+||+
T Consensus       347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFi  426 (712)
T KOG0283|consen  347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFI  426 (712)
T ss_pred             cccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEe
Confidence            58889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          446 SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       446 sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +|+.||+||||++...+++.|.+..+.|+++||+|||++.++|+-+
T Consensus       427 SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~  472 (712)
T KOG0283|consen  427 SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN  472 (712)
T ss_pred             ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEec
Confidence            9999999999999999999999999999999999999999999754

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-34  Score=269.82  Aligned_cols=307  Identities=21%  Similarity=0.294  Sum_probs=242.9

Q ss_pred             CcceeeeecCCCceeE-EccCCCchhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhh
Q 011126          144 HAACRIDDWGKGADLV-VSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRK  219 (493)
Q Consensus       144 ~~~~~~~~ld~g~~~v-~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~  219 (493)
                      +..-++||+++.+..- |++     |.+-  |.-|.|   |+.|+...-++++.     +|.-...+.. ..        
T Consensus       136 D~TvR~WD~~TeTp~~t~Kg-----H~~W--VlcvawsPDgk~iASG~~dg~I~-----lwdpktg~~~-g~--------  194 (480)
T KOG0271|consen  136 DTTVRLWDLDTETPLFTCKG-----HKNW--VLCVAWSPDGKKIASGSKDGSIR-----LWDPKTGQQI-GR--------  194 (480)
T ss_pred             CceEEeeccCCCCcceeecC-----CccE--EEEEEECCCcchhhccccCCeEE-----EecCCCCCcc-cc--------
Confidence            4457999999887644 665     3333  667777   88888888887777     6664443322 12        


Q ss_pred             hccccccccCceeeeeccccccee-----ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc
Q 011126          220 VKRGWLKKLGAMARIIDRHGSATL-----KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL  294 (493)
Q Consensus       220 ~k~~w~~~~~~~~~~~~~~~~~~f-----sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp  294 (493)
                                .+.+|..-+.+++|     .|..++||+++.||.|+|||+..+..       ...+.+|+.+|+|++|--
T Consensus       195 ----------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-------~~~lsgHT~~VTCvrwGG  257 (480)
T KOG0271|consen  195 ----------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-------VRTLSGHTASVTCVRWGG  257 (480)
T ss_pred             ----------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-------EEEeccCccceEEEEEcC
Confidence                      23344444555554     45677999999999999999885443       335789999999999975


Q ss_pred             CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcc--------------------ccc
Q 011126          295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK--------------------IDK  354 (493)
Q Consensus       295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~  354 (493)
                      +| +|++|+.|++|++|+...|.+...++.|..-++.+.++....-..-+++-....                    ...
T Consensus       258 ~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~  336 (480)
T KOG0271|consen  258 EG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG  336 (480)
T ss_pred             Cc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence            55 899999999999999999999999999988777776653321111111111111                    011


Q ss_pred             eeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEE
Q 011126          355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT  432 (493)
Q Consensus       355 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~  432 (493)
                      -....++.+..+++|.+...   .+|+..+.+|..-|+.+.|+|++ ++|+++.|+.|+|||.++++.+.+|. |-+.|+
T Consensus       337 erlVSgsDd~tlflW~p~~~---kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VY  413 (480)
T KOG0271|consen  337 ERLVSGSDDFTLFLWNPFKS---KKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVY  413 (480)
T ss_pred             ceeEEecCCceEEEeccccc---ccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeE
Confidence            34678899999999987543   46788899999999999999999 99999999999999999999999998 999999


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       433 ~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      .|+|+. |.++|++|+.|.++++|++++.++. .+.+|.+.|.++.|+|||+.+++|+.|++
T Consensus       414 qvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv  474 (480)
T KOG0271|consen  414 QVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKV  474 (480)
T ss_pred             EEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceE
Confidence            999999 9999999999999999999999987 58999999999999999999999999975

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.1e-34  Score=269.88  Aligned_cols=238  Identities=21%  Similarity=0.341  Sum_probs=213.1

Q ss_pred             cCceeeeecccccceeccC--CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC
Q 011126          228 LGAMARIIDRHGSATLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~--g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D  305 (493)
                      +..+.+|...+.++.|+|.  +..+|+++.||+|++|++...       ...+.+.+|...|..++|+|+|++|+|++.|
T Consensus       210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD  282 (459)
T KOG0272|consen  210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-------TPLQDLEGHLARVSRVAFHPSGKFLGTASFD  282 (459)
T ss_pred             eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-------cchhhhhcchhhheeeeecCCCceeeecccc
Confidence            3457788889999999998  569999999999999998754       2445789999999999999999999999999


Q ss_pred             CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      .+-++||+.++..+.....|...+.++.|.+++.                ...+++.|....+|+.+..+    .+..+.
T Consensus       283 ~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS----------------L~~tGGlD~~~RvWDlRtgr----~im~L~  342 (459)
T KOG0272|consen  283 STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS----------------LAATGGLDSLGRVWDLRTGR----CIMFLA  342 (459)
T ss_pred             cchhhcccccchhhHhhcccccccceeEecCCCc----------------eeeccCccchhheeecccCc----EEEEec
Confidence            9999999999999888888888888888877662                23466777778888887644    478899


Q ss_pred             cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      +|..+|.+++|+|+| .||||+.|++++|||++...++.++. |.+-|+.|.|.|..|.+|+|++.|++++||...+.++
T Consensus       343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~  422 (459)
T KOG0272|consen  343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP  422 (459)
T ss_pred             ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence            999999999999999 99999999999999999999988886 9999999999998899999999999999999999998


Q ss_pred             EE-ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          464 VD-YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       464 ~~-~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +. +.+|.+.|.++.++|||+++++++-|.
T Consensus       423 ~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR  452 (459)
T KOG0272|consen  423 LKSLAGHEGKVISLDISPDSQAIATSSFDR  452 (459)
T ss_pred             chhhcCCccceEEEEeccCCceEEEeccCc
Confidence            85 899999999999999999999999874

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-32  Score=258.30  Aligned_cols=246  Identities=21%  Similarity=0.363  Sum_probs=208.2

Q ss_pred             ccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126          225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (493)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (493)
                      .+....+.+|...+-+++|+|+|..||+|+.|.++++||+.+..       +..+.++|...|.|++|+|||+.||+|+.
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-------p~~t~KgH~~WVlcvawsPDgk~iASG~~  177 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-------PLFTCKGHKNWVLCVAWSPDGKKIASGSK  177 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-------cceeecCCccEEEEEEECCCcchhhcccc
Confidence            34556788899999999999999999999999999999988654       33457899999999999999999999999


Q ss_pred             CCcEEEEecCCCeee-eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126          305 DGTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (493)
Q Consensus       305 Dg~V~iWdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (493)
                      ||+|++||..+++++ ..+..|...+.++.|.+.+...           ........+.|+.+.+|+....    +.+..
T Consensus       178 dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p-----------~~r~las~skDg~vrIWd~~~~----~~~~~  242 (480)
T KOG0271|consen  178 DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP-----------PCRRLASSSKDGSVRIWDTKLG----TCVRT  242 (480)
T ss_pred             CCeEEEecCCCCCcccccccCcccceeEEeecccccCC-----------CccceecccCCCCEEEEEccCc----eEEEE
Confidence            999999999988765 5577888888888887665321           1114567788999999988753    44788


Q ss_pred             EecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEE----------------------------------------
Q 011126          384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR----------------------------------------  423 (493)
Q Consensus       384 ~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~----------------------------------------  423 (493)
                      +.||+.+|+|+.|-.+|+|++|+.|++|++|+...+.+.+                                        
T Consensus       243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~  322 (480)
T KOG0271|consen  243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK  322 (480)
T ss_pred             eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence            9999999999999988899999999999999865432100                                        


Q ss_pred             ----------------------------------------EecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          424 ----------------------------------------VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       424 ----------------------------------------~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                                                              ...|..-|+.+.|+| |++|+|+++.|..|++||.++|+.
T Consensus       323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~  401 (480)
T KOG0271|consen  323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKF  401 (480)
T ss_pred             HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcch
Confidence                                                    012777899999999 999999999999999999999998


Q ss_pred             E-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          464 V-DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       464 ~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      + .+.+|-..|..++|+.|.++|++++.|.+
T Consensus       402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsT  432 (480)
T KOG0271|consen  402 LASFRGHVAAVYQVAWSADSRLLVSGSKDST  432 (480)
T ss_pred             hhhhhhccceeEEEEeccCccEEEEcCCCce
Confidence            8 58899999999999999999999998864

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.98  E-value=1.8e-31  Score=271.81  Aligned_cols=238  Identities=27%  Similarity=0.416  Sum_probs=209.1

Q ss_pred             eecccccceeccCCCeEEeeecCCeEEEEECCCcc-------cccc-----------------ccccceeeecccCCEEE
Q 011126          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS-------RELS-----------------SLYTGQEFLAHEGSILT  289 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~-------~~~~-----------------~~~~~~~l~~H~~~I~~  289 (493)
                      ....+.|..|++++.+||.|-.|-.|++|.+...+       ..+.                 ......++.+|.++|..
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg  456 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG  456 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence            34567789999999999999999999999988422       0111                 11122458899999999


Q ss_pred             EEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEc
Q 011126          290 MKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVL  369 (493)
Q Consensus       290 l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  369 (493)
                      +.|+|+.++|+++++|++||+|.+.+..++..++.|..+++.+.|++.+                ..+++++.|.+..+|
T Consensus       457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G----------------yYFatas~D~tArLW  520 (707)
T KOG0263|consen  457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG----------------YYFATASHDQTARLW  520 (707)
T ss_pred             eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc----------------eEEEecCCCceeeee
Confidence            9999999999999999999999999999999999999999988887653                445566778888888


Q ss_pred             CCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEE
Q 011126          370 PPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISG  447 (493)
Q Consensus       370 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sg  447 (493)
                      ...-    .+|++.+.||.+.|.|+.|+|+. |++|||.|.+||+||+.++..++.|. |.++|++++|+| +|++|++|
T Consensus       521 s~d~----~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg  595 (707)
T KOG0263|consen  521 STDH----NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLASG  595 (707)
T ss_pred             eccc----CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEeec
Confidence            7654    46788999999999999999998 99999999999999999999999997 999999999999 99999999


Q ss_pred             eCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          448 SIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       448 s~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +.||.|.|||+.+++++ .+.+|.+.|.++.|+.||..||+++.|.
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn  641 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN  641 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC
Confidence            99999999999998877 6899999999999999999999999874

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2e-31  Score=253.69  Aligned_cols=230  Identities=22%  Similarity=0.325  Sum_probs=199.9

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC--CCEEEEEECCCcEEEEec
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~V~iWdl  313 (493)
                      ..+..+.|++++..||||+.+|.++||+....       ...++|.+|+..|.++.|+|.  +..||||+.||+|++|++
T Consensus       176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~  248 (459)
T KOG0272|consen  176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL  248 (459)
T ss_pred             CcceeeEeecCCCeEEEeecCCceeEeecCCc-------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence            34555889999999999999999999998743       355689999999999999996  669999999999999999


Q ss_pred             CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (493)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (493)
                      .+...+..+..|...+..+.|.+++..                ..+++-|.+-.+|+....    ..+....||...|.+
T Consensus       249 ~~e~~l~~l~gH~~RVs~VafHPsG~~----------------L~TasfD~tWRlWD~~tk----~ElL~QEGHs~~v~~  308 (459)
T KOG0272|consen  249 SQETPLQDLEGHLARVSRVAFHPSGKF----------------LGTASFDSTWRLWDLETK----SELLLQEGHSKGVFS  308 (459)
T ss_pred             CCCcchhhhhcchhhheeeeecCCCce----------------eeecccccchhhcccccc----hhhHhhcccccccce
Confidence            999999999999888888888877643                234455555566665442    335567899999999


Q ss_pred             EEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCC
Q 011126          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIR  470 (493)
Q Consensus       394 l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~  470 (493)
                      ++|.|+| +++||+.|..-||||+++++++..+. |...|.+|.|+| +|..|||||.|++++|||++..+.+ .+..|.
T Consensus       309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~  387 (459)
T KOG0272|consen  309 IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHS  387 (459)
T ss_pred             eEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceeccccc
Confidence            9999999 99999999999999999999999997 999999999999 9999999999999999999988766 588999


Q ss_pred             CCeEEEEEcc-CCCEEEEeecCCC
Q 011126          471 EIVSAVCYCP-DGKVRQNSACNFC  493 (493)
Q Consensus       471 ~~I~sv~~sp-dG~~l~s~s~d~~  493 (493)
                      +-|+.|+|+| .|.+|++++-|.|
T Consensus       388 nlVS~Vk~~p~~g~fL~TasyD~t  411 (459)
T KOG0272|consen  388 NLVSQVKYSPQEGYFLVTASYDNT  411 (459)
T ss_pred             chhhheEecccCCeEEEEcccCcc
Confidence            9999999999 7889999988764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=1.1e-29  Score=244.76  Aligned_cols=272  Identities=21%  Similarity=0.361  Sum_probs=210.5

Q ss_pred             ccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeEEeeecCCeEEE
Q 011126          182 SVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRV  261 (493)
Q Consensus       182 ~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~v  261 (493)
                      .++..+++.+..     +|.|..........+ ..+......     +.-......+++++|+.+|.+||+|+.+|.++|
T Consensus       193 llasg~~~s~ar-----i~~l~e~~~~~~~q~-~lrh~~~~~-----~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ri  261 (524)
T KOG0273|consen  193 LLASGSGDSTAR-----IWNLLENSNIGSTQL-VLRHCIREG-----GKSVPSNKDVTSLDWNNDGTLLATGSEDGEARI  261 (524)
T ss_pred             hhhccCCcccee-----eeeehhhccccchhh-hhhhhhhhh-----cccCCccCCcceEEecCCCCeEEEeecCcEEEE
Confidence            567777777777     777665322221111 111111100     111112356777999999999999999999999


Q ss_pred             EECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCc
Q 011126          262 HPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ  341 (493)
Q Consensus       262 wd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (493)
                      |+.....        ..+|..|+++|.+|+|+.+|.||++++.|+++.+||..++...+.+..+..+...+.|..+.   
T Consensus       262 w~~~G~l--------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~---  330 (524)
T KOG0273|consen  262 WNKDGNL--------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND---  330 (524)
T ss_pred             EecCchh--------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc---
Confidence            9986543        22467799999999999999999999999999999999999988888877664434433222   


Q ss_pred             eeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc
Q 011126          342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR  420 (493)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~  420 (493)
                                    .+...+.++.+.++....    ..|+.++.||.+.|.+|.|+|.| +|++++.|+|++||.+....
T Consensus       331 --------------~F~ts~td~~i~V~kv~~----~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~  392 (524)
T KOG0273|consen  331 --------------EFATSSTDGCIHVCKVGE----DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN  392 (524)
T ss_pred             --------------eEeecCCCceEEEEEecC----CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence                          123344454555543332    46789999999999999999999 99999999999999999888


Q ss_pred             EEEEec-CCCcEEEEEEccC--------CCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEeec
Q 011126          421 CLRVFS-HNNYVTSVAFNPV--------DDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       421 ~~~~~~-h~~~V~~v~fsp~--------d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      +...+. |...|..+.|+|.        .+..+++++.|++|++||+..+.++. +.+|..+|.+++|+|+|+++++|+-
T Consensus       393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~  472 (524)
T KOG0273|consen  393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL  472 (524)
T ss_pred             chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC
Confidence            888886 9999999999884        34589999999999999999999884 7799999999999999999999999


Q ss_pred             CCC
Q 011126          491 NFC  493 (493)
Q Consensus       491 d~~  493 (493)
                      |+|
T Consensus       473 dg~  475 (524)
T KOG0273|consen  473 DGC  475 (524)
T ss_pred             CCe
Confidence            886

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.96  E-value=3.2e-28  Score=220.88  Aligned_cols=238  Identities=19%  Similarity=0.320  Sum_probs=196.5

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (493)
                      .+.+.+|...+..+.++++|++.++++.|+++++||+....       ..+.|.+|...|.+++|++|.+.|++|+.|.+
T Consensus        56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~-------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkT  128 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE-------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKT  128 (315)
T ss_pred             eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc-------EEEEEEecCCceEEEEecCCCceeecCCCcce
Confidence            44577888889999999999999999999999999988553       34568999999999999999999999999999


Q ss_pred             EEEEecCCCeeeeeeecc-CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126          308 VRVWKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (493)
                      |++|++............ ..-+.|+.|.|+....+              ++..+-|..+.+|+....++    .+.+.|
T Consensus       129 iklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~--------------Ivs~s~DktvKvWnl~~~~l----~~~~~g  190 (315)
T KOG0279|consen  129 IKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI--------------IVSASWDKTVKVWNLRNCQL----RTTFIG  190 (315)
T ss_pred             eeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE--------------EEEccCCceEEEEccCCcch----hhcccc
Confidence            999998655443333332 56678888888774433              34677888999999887665    567889


Q ss_pred             CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       387 h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                      |++.++.++++|+| ++++|+.||.+.+||++.++++..+.|...|.+++|+| + +|.+....+..|+|||+.++.++.
T Consensus       191 h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp-n-rywL~~at~~sIkIwdl~~~~~v~  268 (315)
T KOG0279|consen  191 HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP-N-RYWLCAATATSIKIWDLESKAVVE  268 (315)
T ss_pred             ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC-C-ceeEeeccCCceEEEeccchhhhh
Confidence            99999999999999 99999999999999999999999999999999999999 5 455555566679999999987763


Q ss_pred             -----ecCC-----CCCeEEEEEccCCCEEEEeecCC
Q 011126          466 -----YTDI-----REIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       466 -----~~~~-----~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                           ..+.     .-...+++|++||+.|.+|-.|.
T Consensus       269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~  305 (315)
T KOG0279|consen  269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN  305 (315)
T ss_pred             hccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence                 1222     22467889999999999987764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.96  E-value=4e-28  Score=221.48  Aligned_cols=235  Identities=20%  Similarity=0.372  Sum_probs=199.8

Q ss_pred             CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (493)
Q Consensus       229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V  308 (493)
                      +.+.+|..++.++.|+++.++|++++.||.+.|||.-+..+.       +.+.--...|..++|+|.|+++|+|+-|...
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-------haipl~s~WVMtCA~sPSg~~VAcGGLdN~C  121 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-------HAIPLPSSWVMTCAYSPSGNFVACGGLDNKC  121 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-------eEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence            568899999999999999999999999999999998755543       2345567899999999999999999999999


Q ss_pred             EEEecCCC------eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126          309 RVWKVIEH------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (493)
Q Consensus       309 ~iWdl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (493)
                      .||++.+.      ...+.+..+..-..|..|..+                 ..+++++.|.+|.+|+....    +.+.
T Consensus       122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-----------------~~ilT~SGD~TCalWDie~g----~~~~  180 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-----------------NHILTGSGDMTCALWDIETG----QQTQ  180 (343)
T ss_pred             EEEecccccccccceeeeeecCccceeEEEEEcCC-----------------CceEecCCCceEEEEEcccc----eEEE
Confidence            99999855      233445556555555555442                 23468899999999998764    3478


Q ss_pred             EEecCCCCEeEEEEeC-CC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          383 EFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       383 ~~~~h~~~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      .|.||.+.|.+|+++| ++ .+++|+-|++.+|||++.+.+.++|. |...|++|.|.| +|.-|++|+.|++.|+||++
T Consensus       181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlR  259 (343)
T KOG0286|consen  181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLR  259 (343)
T ss_pred             EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeec
Confidence            8999999999999999 55 99999999999999999999999997 999999999999 99999999999999999999


Q ss_pred             CCeEEEe---cCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          460 RCQVVDY---TDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       460 ~~~~~~~---~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ..+.+..   .....+|++++|+-.|++|.+|..|+
T Consensus       260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~  295 (343)
T KOG0286|consen  260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF  295 (343)
T ss_pred             CCcEEeeeccCcccCCceeEEEcccccEEEeeecCC
Confidence            8766543   33456899999999999999998776

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.96  E-value=5.7e-28  Score=219.27  Aligned_cols=238  Identities=21%  Similarity=0.312  Sum_probs=203.7

Q ss_pred             cCceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126          228 LGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (493)
                      .+.+.+|.+-+..++..+.+ ..++++++|.++.+|++......+  ....+.+.||...|..+..++||++.++++.|+
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~--G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY--GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc--CceeeeeeccceEecceEEccCCceEEeccccc
Confidence            34677788888888887774 577889999999999998764333  234567899999999999999999999999999


Q ss_pred             cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (493)
                      ++|+||+.+++....+..|...+.++.+.++..                ..+.++.|.++.+|+...     ....++..
T Consensus        86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~----------------qivSGSrDkTiklwnt~g-----~ck~t~~~  144 (315)
T KOG0279|consen   86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR----------------QIVSGSRDKTIKLWNTLG-----VCKYTIHE  144 (315)
T ss_pred             eEEEEEecCCcEEEEEEecCCceEEEEecCCCc----------------eeecCCCcceeeeeeecc-----cEEEEEec
Confidence            999999999999999999999988888877653                345788888888887643     22333333


Q ss_pred             --CCCCEeEEEEeCC--C-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          387 --HSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       387 --h~~~V~~l~~sp~--g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                        |.+.|.|+.|+|+  . +|++++.|++|++||+++.+....+. |.++++.++++| ||.++++|+.||.+.+||++.
T Consensus       145 ~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~  223 (315)
T KOG0279|consen  145 DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNE  223 (315)
T ss_pred             CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccC
Confidence              3789999999998  4 99999999999999999998888775 999999999999 999999999999999999999


Q ss_pred             CeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126          461 CQVVDYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       461 ~~~~~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      ++.+...++...|.+++|+|+.-.|..+.
T Consensus       224 ~k~lysl~a~~~v~sl~fspnrywL~~at  252 (315)
T KOG0279|consen  224 GKNLYSLEAFDIVNSLCFSPNRYWLCAAT  252 (315)
T ss_pred             CceeEeccCCCeEeeEEecCCceeEeecc
Confidence            99999999999999999999988776654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=6e-28  Score=218.26  Aligned_cols=260  Identities=20%  Similarity=0.219  Sum_probs=212.3

Q ss_pred             cceeeeecCCCceeEEccCCCchhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhc
Q 011126          145 AACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVK  221 (493)
Q Consensus       145 ~~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k  221 (493)
                      -..+|+++..|..|.|+....++|.++  ||.++|   |++|+.++|+.+..     ||+-..+++++...++++++++|
T Consensus        37 k~vriw~~~~~~s~~ck~vld~~hkrs--VRsvAwsp~g~~La~aSFD~t~~-----Iw~k~~~efecv~~lEGHEnEVK  109 (312)
T KOG0645|consen   37 KAVRIWSTSSGDSWTCKTVLDDGHKRS--VRSVAWSPHGRYLASASFDATVV-----IWKKEDGEFECVATLEGHENEVK  109 (312)
T ss_pred             ceEEEEecCCCCcEEEEEeccccchhe--eeeeeecCCCcEEEEeeccceEE-----EeecCCCceeEEeeeecccccee
Confidence            346889988888899999999999999  999999   99999999999999     99999999999998888887776


Q ss_pred             cccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE
Q 011126          222 RGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS  301 (493)
Q Consensus       222 ~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las  301 (493)
                      +                  ++|+++|.+||++++|+.|-||......    .+.+...++.|+..|..+.|+|...+|++
T Consensus       110 ~------------------Vaws~sG~~LATCSRDKSVWiWe~dedd----Efec~aVL~~HtqDVK~V~WHPt~dlL~S  167 (312)
T KOG0645|consen  110 C------------------VAWSASGNYLATCSRDKSVWIWEIDEDD----EFECIAVLQEHTQDVKHVIWHPTEDLLFS  167 (312)
T ss_pred             E------------------EEEcCCCCEEEEeeCCCeEEEEEecCCC----cEEEEeeeccccccccEEEEcCCcceeEE
Confidence            6                  8999999999999999999999987332    34455678999999999999999999999


Q ss_pred             EECCCcEEEEecC---CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126          302 GGEDGTVRVWKVI---EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (493)
Q Consensus       302 gs~Dg~V~iWdl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (493)
                      +++|.+|++|+-.   ...+.+++..+...+.++.|.+.+.                .....+.+.++.+|...      
T Consensus       168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~----------------rl~s~sdD~tv~Iw~~~------  225 (312)
T KOG0645|consen  168 CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS----------------RLVSCSDDGTVSIWRLY------  225 (312)
T ss_pred             eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc----------------eEEEecCCcceEeeeec------
Confidence            9999999999875   3456777777776666666654442                23345566666666432      


Q ss_pred             cceEEE-ecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcE---EEE-----ecCCCcEEEEEEccCCCCEEEEEeC
Q 011126          379 KPLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC---LRV-----FSHNNYVTSVAFNPVDDNYFISGSI  449 (493)
Q Consensus       379 ~~~~~~-~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~---~~~-----~~h~~~V~~v~fsp~d~~~l~sgs~  449 (493)
                         ..+ .-|..+++.++|. +|.|++++.|+.|+|+.......   ...     ..|...|++|+|+|...+.|++|+.
T Consensus       226 ---~~~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D  301 (312)
T KOG0645|consen  226 ---TDLSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD  301 (312)
T ss_pred             ---cCcchhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCC
Confidence               111 2388999999999 77999999999999998764311   111     1289999999999955889999999


Q ss_pred             CCeEEEEeCC
Q 011126          450 DGKVRIWEVR  459 (493)
Q Consensus       450 Dg~V~IWdl~  459 (493)
                      ||.|++|.+.
T Consensus       302 DG~v~~W~l~  311 (312)
T KOG0645|consen  302 DGIVNFWELE  311 (312)
T ss_pred             CceEEEEEec
Confidence            9999999874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.96  E-value=3e-27  Score=215.80  Aligned_cols=277  Identities=18%  Similarity=0.249  Sum_probs=223.9

Q ss_pred             hhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeeccccccee
Q 011126          167 EIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATL  243 (493)
Q Consensus       167 ~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~f  243 (493)
                      ||.++  |..+.|   .|.|-.++-++.+-     ||......-       .+.-+....|             |...+|
T Consensus        53 GH~~K--i~~~~ws~Dsr~ivSaSqDGklI-----vWDs~TtnK-------~haipl~s~W-------------VMtCA~  105 (343)
T KOG0286|consen   53 GHLNK--IYAMDWSTDSRRIVSASQDGKLI-----VWDSFTTNK-------VHAIPLPSSW-------------VMTCAY  105 (343)
T ss_pred             ccccc--eeeeEecCCcCeEEeeccCCeEE-----EEEcccccc-------eeEEecCcee-------------EEEEEE
Confidence            56665  666666   55666666665544     776554321       1111222333             223799


Q ss_pred             ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeee
Q 011126          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD  323 (493)
Q Consensus       244 sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~  323 (493)
                      +|.|+++|+|+.|+...||++.....+- .....+++.+|++-+.|+.|-+|+ .|+|++.|.++.+||+++++.+..+.
T Consensus       106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g-~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~  183 (343)
T KOG0286|consen  106 SPSGNFVACGGLDNKCSIYPLSTRDAEG-NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFH  183 (343)
T ss_pred             CCCCCeEEecCcCceeEEEecccccccc-cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEec
Confidence            9999999999999999999998553322 233456789999999999998855 68899999999999999999999999


Q ss_pred             ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE
Q 011126          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL  402 (493)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l  402 (493)
                      .|...+..+.+.+...               ..++.++.|....+|+.+..    ..++.|.+|...|+.++|.|+| -+
T Consensus       184 GH~gDV~slsl~p~~~---------------ntFvSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~af  244 (343)
T KOG0286|consen  184 GHTGDVMSLSLSPSDG---------------NTFVSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAF  244 (343)
T ss_pred             CCcccEEEEecCCCCC---------------CeEEecccccceeeeeccCc----ceeEeecccccccceEEEccCCCee
Confidence            8888877777766432               23456778888889988764    4588999999999999999999 99


Q ss_pred             EEEeCCCeEEEEECCCCcEEEEecCC---CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEE
Q 011126          403 LSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY  478 (493)
Q Consensus       403 ~sgs~Dg~V~lWd~~~~~~~~~~~h~---~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~  478 (493)
                      ++|+.|++.|+||++..+.+..+.|.   .+|++++|+- .|++|.+|..|.++.+||.-.++.+ .+.+|.+.|+++..
T Consensus       245 atGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~  323 (343)
T KOG0286|consen  245 ATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV  323 (343)
T ss_pred             eecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE
Confidence            99999999999999999999999854   5899999999 9999999999999999999888777 68999999999999


Q ss_pred             ccCCCEEEEeecCC
Q 011126          479 CPDGKVRQNSACNF  492 (493)
Q Consensus       479 spdG~~l~s~s~d~  492 (493)
                      +|||.-+++|+-|.
T Consensus       324 s~DG~av~TgSWDs  337 (343)
T KOG0286|consen  324 SPDGMAVATGSWDS  337 (343)
T ss_pred             CCCCcEEEecchhH
Confidence            99999999998764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=5.2e-27  Score=214.99  Aligned_cols=257  Identities=21%  Similarity=0.316  Sum_probs=199.3

Q ss_pred             cccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC
Q 011126          226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (493)
Q Consensus       226 ~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D  305 (493)
                      ..+..+.+|...+..+.|+|+|.+||+|+.|..|.+|++....+.+.      .+++|.++|..+.|.+|+..|++++.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~------~lkgHsgAVM~l~~~~d~s~i~S~gtD  111 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW------VLKGHSGAVMELHGMRDGSHILSCGTD  111 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccccee------eeccccceeEeeeeccCCCEEEEecCC
Confidence            34455778888899999999999999999999999999765554443      467999999999999999999999999


Q ss_pred             CcEEEEecCCCeeeeeeeccCCCCceEEE---------eeCCCCceeeeeccCcccc-----------------ceeeee
Q 011126          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYF---------TINHLSQLIPIDVDKEKID-----------------KTKSLR  359 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-----------------~~~~~~  359 (493)
                      .+|+.||+.++++++.++.+..-+..+..         +......+..++.-.+...                 ......
T Consensus       112 k~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~s  191 (338)
T KOG0265|consen  112 KTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVIS  191 (338)
T ss_pred             ceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceee
Confidence            99999999999999988877654443331         1111112222221111000                 011133


Q ss_pred             cCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECC----CCcEEEEec---CC--C
Q 011126          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG----IDRCLRVFS---HN--N  429 (493)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~----~~~~~~~~~---h~--~  429 (493)
                      +.-+..+.+|+++..    ...+.+.||...|+.|..+|.| ++++-++|.+|++||++    ..+|+..+.   |.  .
T Consensus       192 ggIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek  267 (338)
T KOG0265|consen  192 GGIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK  267 (338)
T ss_pred             ccccCceeeeccccC----cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhh
Confidence            444455555555432    3478899999999999999999 99999999999999997    456787775   33  3


Q ss_pred             cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       430 ~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      ....++|+| +++++.+|+.|..+++||.....++ .+.+|.+.|+.+.|+|...+|+++++|++
T Consensus       268 nlL~cswsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~  331 (338)
T KOG0265|consen  268 NLLKCSWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT  331 (338)
T ss_pred             hcceeeccC-CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence            456789999 9999999999999999999986655 79999999999999999999999999974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.8e-26  Score=233.43  Aligned_cols=235  Identities=23%  Similarity=0.376  Sum_probs=190.5

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      +.++|.+.+.+++++|||+++|+|+.||.|+|||..       ..++..+|..|+..|+.++|+..|+.|++.+-||+||
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-------SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVR  417 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-------SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVR  417 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEecc-------CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEE
Confidence            467889999999999999999999999999999976       3346668999999999999999999999999999999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      .||+......+++..+... ....++.+..+.+++.             ..-....+.+|..+..+    .+..+.||.+
T Consensus       418 AwDlkRYrNfRTft~P~p~-QfscvavD~sGelV~A-------------G~~d~F~IfvWS~qTGq----llDiLsGHEg  479 (893)
T KOG0291|consen  418 AWDLKRYRNFRTFTSPEPI-QFSCVAVDPSGELVCA-------------GAQDSFEIFVWSVQTGQ----LLDILSGHEG  479 (893)
T ss_pred             eeeecccceeeeecCCCce-eeeEEEEcCCCCEEEe-------------eccceEEEEEEEeecCe----eeehhcCCCC
Confidence            9999999888888766432 2222333333333322             22334467777766544    3677899999


Q ss_pred             CEeEEEEeCCC-eEEEEeCCCeEEEEECCC-CcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--
Q 011126          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--  465 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~-~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~--  465 (493)
                      +|.+|+|+|.+ .|++++.|+|||+||+-. ...+.++.+...+..++|.| +|.-|++++.||.|.+||+..+..+.  
T Consensus       480 PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~~~I  558 (893)
T KOG0291|consen  480 PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQVGSI  558 (893)
T ss_pred             cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEhhhceeeccc
Confidence            99999999999 999999999999999864 45677888999999999999 99999999999999999998654331  


Q ss_pred             -------------------ecCCCCCeEEEEEccCCCEEEEeec
Q 011126          466 -------------------YTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       466 -------------------~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                                         .......+++|+|++||..+++||.
T Consensus       559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~  602 (893)
T KOG0291|consen  559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE  602 (893)
T ss_pred             cchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence                               0112357999999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.95  E-value=1.2e-26  Score=236.61  Aligned_cols=231  Identities=20%  Similarity=0.327  Sum_probs=199.2

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+.+|...|....|+|+.++|++++.|++||+|.+....       +.-.+.||..+|+.+.|+|.|-|+|||+.|++.+
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-------~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr  518 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-------CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR  518 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccce-------eEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence            377899999999999999999999999999999987443       3335789999999999999999999999999999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      +|........+.+..+...+.|+.|.|+..                ...+++.+.++.+|+....    ..++.|.||.+
T Consensus       519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~----------------Y~aTGSsD~tVRlWDv~~G----~~VRiF~GH~~  578 (707)
T KOG0263|consen  519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSN----------------YVATGSSDRTVRLWDVSTG----NSVRIFTGHKG  578 (707)
T ss_pred             eeecccCCchhhhcccccccceEEECCccc----------------ccccCCCCceEEEEEcCCC----cEEEEecCCCC
Confidence            999999999999999999999999988763                2356788999999988654    34888999999


Q ss_pred             CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE----
Q 011126          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV----  463 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~----  463 (493)
                      +|++|+|+|+| +|++|+.|+.|+|||+.++..+..+. |++.|+++.|+. +|..||+|+.|.+|++||+.....    
T Consensus       579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~~~~~~~  657 (707)
T KOG0263|consen  579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKVIELLNL  657 (707)
T ss_pred             ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchhhcccccc
Confidence            99999999999 99999999999999999999888875 999999999999 999999999999999999863211    


Q ss_pred             --------------------E-EecCCCCCeEEEEEccCCCEEEEe
Q 011126          464 --------------------V-DYTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       464 --------------------~-~~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                                          + .+..-..+|..+.|.--...|++|
T Consensus       658 ~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  658 GHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             cccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence                                1 223334578888888877555554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.95  E-value=2e-27  Score=225.51  Aligned_cols=234  Identities=18%  Similarity=0.282  Sum_probs=201.1

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeeccc-CCEEEEEEccCCCEEEEEECCCcEE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      +..|...|.++.|+++|.++++|..+|.|++|+..-..        .+.+++|. ..|++++|+|+...+++|+.||+|+
T Consensus       134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ik  205 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIK  205 (464)
T ss_pred             hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEE
Confidence            34567788889999999999999999999999875332        23455555 9999999999999999999999999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      |||....+.-..+..+.-.+.++.|.+..                ...+.++.+..+.+|+++..    .++.++.+|..
T Consensus       206 iWdf~~~kee~vL~GHgwdVksvdWHP~k----------------gLiasgskDnlVKlWDprSg----~cl~tlh~HKn  265 (464)
T KOG0284|consen  206 IWDFRMPKEERVLRGHGWDVKSVDWHPTK----------------GLIASGSKDNLVKLWDPRSG----SCLATLHGHKN  265 (464)
T ss_pred             EEeccCCchhheeccCCCCcceeccCCcc----------------ceeEEccCCceeEeecCCCc----chhhhhhhccc
Confidence            99998888777778887777777775543                33456777888999999874    45888999999


Q ss_pred             CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--
Q 011126          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--  465 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~--  465 (493)
                      .|..+.|+|++ +|+|++.|..++++|+++.+.+.+++ |...|+++.|+|....+|++|+.||.|..|.+...+.+.  
T Consensus       266 tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i  345 (464)
T KOG0284|consen  266 TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI  345 (464)
T ss_pred             eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC
Confidence            99999999999 99999999999999999888888887 999999999999999999999999999999998555553  


Q ss_pred             ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          466 YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       466 ~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      -..|...|++++|+|=|.+|++|+.|.
T Consensus       346 ~~AHd~~iwsl~~hPlGhil~tgsnd~  372 (464)
T KOG0284|consen  346 PPAHDGEIWSLAYHPLGHILATGSNDR  372 (464)
T ss_pred             CcccccceeeeeccccceeEeecCCCc
Confidence            466888999999999999999988775

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.7e-26  Score=215.13  Aligned_cols=236  Identities=20%  Similarity=0.290  Sum_probs=198.9

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+.+|.+.+..++|+..|++||+++.|-.+++|+..+..      .+.+.+.+|...|.+++|-|.|.+|++++.|.+|+
T Consensus       145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~------~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik  218 (406)
T KOG0295|consen  145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF------RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIK  218 (406)
T ss_pred             hhhccccceeEEEEecCccEEEecCCccchhheeHHHHH------HHHHHhcCcccceeeEEEEecCCeeeeccccccee
Confidence            467788888889999999999999999999999987532      23345678999999999999999999999999999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      +|++.++.+++++..+..-+.  .+.++..              .......+.+..+.+|.....    .....+..|..
T Consensus       219 ~We~~tg~cv~t~~~h~ewvr--~v~v~~D--------------Gti~As~s~dqtl~vW~~~t~----~~k~~lR~hEh  278 (406)
T KOG0295|consen  219 AWECDTGYCVKTFPGHSEWVR--MVRVNQD--------------GTIIASCSNDQTLRVWVVATK----QCKAELREHEH  278 (406)
T ss_pred             EEecccceeEEeccCchHhEE--EEEecCC--------------eeEEEecCCCceEEEEEeccc----hhhhhhhcccc
Confidence            999999999999987766322  2223322              233456677778888866543    23456788999


Q ss_pred             CEeEEEEeC--------------CC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCe
Q 011126          390 EVLDLSWSK--------------NG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK  452 (493)
Q Consensus       390 ~V~~l~~sp--------------~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~  452 (493)
                      +|.+++|.|              ++  ++++++.|++|++||+.++.|+.++. |.+.|..++|+| .|+||+++..|++
T Consensus       279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDkt  357 (406)
T KOG0295|consen  279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKT  357 (406)
T ss_pred             ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCc
Confidence            999999966              22  89999999999999999999999986 999999999999 9999999999999


Q ss_pred             EEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          453 VRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       453 V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +++||+++++.+ .+..|..-++++.|+.+..++++|+-|.
T Consensus       358 lrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdq  398 (406)
T KOG0295|consen  358 LRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQ  398 (406)
T ss_pred             EEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccc
Confidence            999999999887 4788999999999999999999998653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.94  E-value=5.1e-26  Score=219.47  Aligned_cols=202  Identities=25%  Similarity=0.432  Sum_probs=172.9

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccccc----------------------------------c
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------------------------------S  273 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~----------------------------------~  273 (493)
                      +..+.+|...+.++.|+..|.||++++.|+++.+||..+....-.                                  .
T Consensus       269 ~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~  348 (524)
T KOG0273|consen  269 ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGE  348 (524)
T ss_pred             hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecC
Confidence            345677888899999999999999999999999999855332100                                  1


Q ss_pred             cccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccc
Q 011126          274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID  353 (493)
Q Consensus       274 ~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (493)
                      -.+..++.+|.+.|.+|+|+|.|.+|++++.|++++||.......                                   
T Consensus       349 ~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~-----------------------------------  393 (524)
T KOG0273|consen  349 DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS-----------------------------------  393 (524)
T ss_pred             CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc-----------------------------------
Confidence            112346889999999999999999999999999999999755432                                   


Q ss_pred             ceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC----------eEEEEeCCCeEEEEECCCCcEEE
Q 011126          354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG----------FLLSSSADKTVRLWQVGIDRCLR  423 (493)
Q Consensus       354 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g----------~l~sgs~Dg~V~lWd~~~~~~~~  423 (493)
                                                 .+.+.+|...|..+.|+|.|          .+++++.|++|++||+..+.+++
T Consensus       394 ---------------------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~  446 (524)
T KOG0273|consen  394 ---------------------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH  446 (524)
T ss_pred             ---------------------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE
Confidence                                       34466788888888888743          79999999999999999999999


Q ss_pred             Ee-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          424 VF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       424 ~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +| +|..+|.+++|+| +++|+|+|+.||.|.||+++++++++.....+.|..++|+.+|.+|.++.+|.
T Consensus       447 ~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~  515 (524)
T KOG0273|consen  447 TLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDG  515 (524)
T ss_pred             eeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCC
Confidence            99 6999999999999 99999999999999999999999998777788899999999999998877653

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.94  E-value=2.5e-25  Score=199.01  Aligned_cols=236  Identities=16%  Similarity=0.306  Sum_probs=188.3

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      ++......++.+.+.|+++.||+++. ..|++||+......     +..+|.+|+..|..+.|..+|+.+++|++||++|
T Consensus        35 Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-----Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~k  108 (311)
T KOG0315|consen   35 TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-----PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVK  108 (311)
T ss_pred             EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-----ceeEEeccCCceEEEEEeecCeEEEecCCCceEE
Confidence            34444456677999999999999865 67999999876532     3447899999999999999999999999999999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      |||++...+.+.+... .++.++...++.                ...+.+..++.+.+|+.+.-.....++   .....
T Consensus       109 IWdlR~~~~qR~~~~~-spVn~vvlhpnQ----------------teLis~dqsg~irvWDl~~~~c~~~li---Pe~~~  168 (311)
T KOG0315|consen  109 IWDLRSLSCQRNYQHN-SPVNTVVLHPNQ----------------TELISGDQSGNIRVWDLGENSCTHELI---PEDDT  168 (311)
T ss_pred             EEeccCcccchhccCC-CCcceEEecCCc----------------ceEEeecCCCcEEEEEccCCccccccC---CCCCc
Confidence            9999987766666655 556666555443                334567778889999886543322221   22346


Q ss_pred             CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc------EEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR------CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~------~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~  461 (493)
                      .|.+++..|+| +|+.+...|...+|++-+..      ++..|+ |..++..+.++| +++|||+++.|.+++||++.+.
T Consensus       169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCc
Confidence            89999999999 99999999999999987643      333343 999999999999 9999999999999999999987


Q ss_pred             -eEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          462 -QVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       462 -~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                       +.. .+.+|...++..+|+.||+||+++++|.
T Consensus       248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~  280 (311)
T KOG0315|consen  248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDH  280 (311)
T ss_pred             eeeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence             322 5788889999999999999999999874

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.1e-25  Score=200.73  Aligned_cols=201  Identities=24%  Similarity=0.386  Sum_probs=168.2

Q ss_pred             ccCceeeeecccccceeccC-CCeEEeeecCCeEEEEECCCccccccccccceee-ecccCCEEEEEEccCCCEEEEEEC
Q 011126          227 KLGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGE  304 (493)
Q Consensus       227 ~~~~~~~~~~~~~~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~  304 (493)
                      .+..+.+|.+++..++|+|. |..||+++.|+.|+||+.....    .+.+...+ .+|+..|+.++|+|.|++||+|+.
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~----s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF   81 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD----SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF   81 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC----cEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence            44567778888888999999 9999999999999999987411    11111122 479999999999999999999999


Q ss_pred             CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                      |.++.||.-..++                                                            .+.+..+
T Consensus        82 D~t~~Iw~k~~~e------------------------------------------------------------fecv~~l  101 (312)
T KOG0645|consen   82 DATVVIWKKEDGE------------------------------------------------------------FECVATL  101 (312)
T ss_pred             cceEEEeecCCCc------------------------------------------------------------eeEEeee
Confidence            9999999743322                                                            1225678


Q ss_pred             ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC---cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID---RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~---~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      .||...|.+++|+++| +||||+.|+.|-||.+..+   .|+..+. |...|..+.|+| ...+|++++.|.+|++|+-.
T Consensus       102 EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  102 EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDE  180 (312)
T ss_pred             eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeec
Confidence            9999999999999999 9999999999999999744   4666665 999999999999 89999999999999999877


Q ss_pred             -CC--eEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          460 -RC--QVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       460 -~~--~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                       ..  +++ .+.+|...|.+++|+|.|..|++++.|.
T Consensus       181 ~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~  217 (312)
T KOG0645|consen  181 DDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG  217 (312)
T ss_pred             CCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc
Confidence             33  333 6888999999999999999999988775

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.94  E-value=4.2e-25  Score=197.61  Aligned_cols=228  Identities=21%  Similarity=0.318  Sum_probs=177.3

Q ss_pred             ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (493)
Q Consensus       227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (493)
                      ++.++.+|...+.++.|..+|+++++|+.||+++|||++...        .+....|..+|+++..+|+...|++|..+|
T Consensus        75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--------~qR~~~~~spVn~vvlhpnQteLis~dqsg  146 (311)
T KOG0315|consen   75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--------CQRNYQHNSPVNTVVLHPNQTELISGDQSG  146 (311)
T ss_pred             ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc--------cchhccCCCCcceEEecCCcceEEeecCCC
Confidence            445677788888899999999999999999999999988522        223455889999999999999999999999


Q ss_pred             cEEEEecCCCeeeeeeecc-CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc--eeecccceEE
Q 011126          307 TVRVWKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV--FRLLEKPLHE  383 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~  383 (493)
                      .|+|||+.+..+...+-.. ...+..+.+.+++                .........+.|++|..-.  ....-.|+..
T Consensus       147 ~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg----------------sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k  210 (311)
T KOG0315|consen  147 NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG----------------SMLAAANNKGNCYVWRLLNHQTASELEPVHK  210 (311)
T ss_pred             cEEEEEccCCccccccCCCCCcceeeEEEcCCC----------------cEEEEecCCccEEEEEccCCCccccceEhhh
Confidence            9999999877654433221 1222222222222                1223445566777776543  2223468889


Q ss_pred             EecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC-cEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       384 ~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~-~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      ++.|.+.|+...+||++ +|++++.|++++||+.... +.-..+ .|...++..+|+. +++||++|+.|+.+++|++..
T Consensus       211 ~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~  289 (311)
T KOG0315|consen  211 FQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSA  289 (311)
T ss_pred             eecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeeccccc
Confidence            99999999999999999 9999999999999999887 333333 3889999999999 999999999999999999999


Q ss_pred             CeEE-EecCCCCCeEEEEEc
Q 011126          461 CQVV-DYTDIREIVSAVCYC  479 (493)
Q Consensus       461 ~~~~-~~~~~~~~I~sv~~s  479 (493)
                      ++.+ .+.+|.....+++..
T Consensus       290 ~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  290 GKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             CceeeecCCcccccEEEEee
Confidence            8876 588888887777653

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.94  E-value=1.2e-25  Score=210.13  Aligned_cols=235  Identities=19%  Similarity=0.349  Sum_probs=203.1

Q ss_pred             ccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126          225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (493)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (493)
                      |+..+.+.+|.+=+.++++.|.+.++++|+.|++|+|||+..+...+       ++.||...|..+++++--.||++++.
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-------tltGhi~~vr~vavS~rHpYlFs~ge  213 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-------TLTGHIETVRGVAVSKRHPYLFSAGE  213 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-------eecchhheeeeeeecccCceEEEecC
Confidence            44556688899999999999999999999999999999998766433       57899999999999999999999999


Q ss_pred             CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                      |+.|+.||+...+.++.+..+-..+.|+...+.-                -..++++.|..+.+|+.+.-    ..++.+
T Consensus       214 dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl----------------dvl~t~grDst~RvWDiRtr----~~V~~l  273 (460)
T KOG0285|consen  214 DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL----------------DVLVTGGRDSTIRVWDIRTR----ASVHVL  273 (460)
T ss_pred             CCeeEEEechhhhhHHHhccccceeEEEeccccc----------------eeEEecCCcceEEEeeeccc----ceEEEe
Confidence            9999999999999999888877766666543322                23467888999999998763    458899


Q ss_pred             ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      .||..+|..+.+.|.+ .+++|+.|++|++||++.++...++. |...|.+++.+| ....||+++.|. |+-|++..+.
T Consensus       274 ~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~dn-ik~w~~p~g~  351 (460)
T KOG0285|consen  274 SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPDN-IKQWKLPEGE  351 (460)
T ss_pred             cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCcc-ceeccCCccc
Confidence            9999999999999977 99999999999999999998887775 889999999999 899999999885 9999999998


Q ss_pred             EE-EecCCCCCeEEEEEccCCCEEEEee
Q 011126          463 VV-DYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       463 ~~-~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .+ .+.+|...|++++.+.||- +++|+
T Consensus       352 f~~nlsgh~~iintl~~nsD~v-~~~G~  378 (460)
T KOG0285|consen  352 FLQNLSGHNAIINTLSVNSDGV-LVSGG  378 (460)
T ss_pred             hhhccccccceeeeeeeccCce-EEEcC
Confidence            77 5889999999999999984 44444

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.94  E-value=2.2e-24  Score=210.71  Aligned_cols=237  Identities=19%  Similarity=0.308  Sum_probs=179.5

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      +...|..-+.++.|+|||.++|+.+.||+|.+||=+...+...    ...-.+|++.|.+|.|+||++.|+|++.|.+++
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~----l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~K  260 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE----LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIK  260 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE----ecCCCCccccEEEEEECCCCceEEEecCCceEE
Confidence            3445667788899999999999999999999999776543211    001248999999999999999999999999999


Q ss_pred             EEecCCCeeeeeeeccCCCCc---eEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126          310 VWKVIEHERLDGFDVQDTDPS---CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (493)
                      |||+.+.+++.++........   .+.|.   ...+               +.-+..+.+-.+++...    .+++.+.|
T Consensus       261 IWdVs~~slv~t~~~~~~v~dqqvG~lWq---kd~l---------------ItVSl~G~in~ln~~d~----~~~~~i~G  318 (603)
T KOG0318|consen  261 IWDVSTNSLVSTWPMGSTVEDQQVGCLWQ---KDHL---------------ITVSLSGTINYLNPSDP----SVLKVISG  318 (603)
T ss_pred             EEEeeccceEEEeecCCchhceEEEEEEe---CCeE---------------EEEEcCcEEEEecccCC----Chhheecc
Confidence            999999999888876544111   11111   1111               22233334444433322    35778889


Q ss_pred             CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE--------------------------------------------
Q 011126          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC--------------------------------------------  421 (493)
Q Consensus       387 h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~--------------------------------------------  421 (493)
                      |...|++|+.+|++ +|++|+.||.|.-|+..++..                                            
T Consensus       319 HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~  398 (603)
T KOG0318|consen  319 HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTK  398 (603)
T ss_pred             cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccc
Confidence            99999999999998 999999999999998643311                                            


Q ss_pred             --------------------------------------------------------------------E-----------
Q 011126          422 --------------------------------------------------------------------L-----------  422 (493)
Q Consensus       422 --------------------------------------------------------------------~-----------  422 (493)
                                                                                          +           
T Consensus       399 ~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~  478 (603)
T KOG0318|consen  399 SEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK  478 (603)
T ss_pred             cceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc
Confidence                                                                                1           


Q ss_pred             ---EEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE--EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          423 ---RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       423 ---~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~--~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                         ....|.++|++|+++| ++.|||+|...++|.+||+.++++.  .|.-|...|++++|+|+.+.+|+|+-|-|
T Consensus       479 ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~  553 (603)
T KOG0318|consen  479 EEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTN  553 (603)
T ss_pred             ceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccce
Confidence               1112667889999999 9999999999999999999888775  47789999999999999999999987754

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.94  E-value=1.3e-26  Score=219.89  Aligned_cols=226  Identities=22%  Similarity=0.400  Sum_probs=186.5

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      .|..+.|.|+|+.|++|+..|.+.+|+...-.       ..-.+++|..+|.+|.|+++|.+++||+.+|.|++|+..-.
T Consensus        98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn  170 (464)
T KOG0284|consen   98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN  170 (464)
T ss_pred             ceeeEEEcCCCceeEeecccccEEEecCceee-------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence            34458999999999999999999999974222       22236899999999999999999999999999999997543


Q ss_pred             eeeeeeeccC-CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          317 ERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       317 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      . ++.+..+. ..+.+++|+++.                ..+++.+.|+.+.+|+....    ++-..+.||.-.|.++.
T Consensus       171 n-Vk~~~ahh~eaIRdlafSpnD----------------skF~t~SdDg~ikiWdf~~~----kee~vL~GHgwdVksvd  229 (464)
T KOG0284|consen  171 N-VKIIQAHHAEAIRDLAFSPND----------------SKFLTCSDDGTIKIWDFRMP----KEERVLRGHGWDVKSVD  229 (464)
T ss_pred             h-hHHhhHhhhhhhheeccCCCC----------------ceeEEecCCCeEEEEeccCC----chhheeccCCCCcceec
Confidence            3 33344333 667788887744                23456678888888876542    34556799999999999


Q ss_pred             EeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC-eEEEecCCCCC
Q 011126          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDIREI  472 (493)
Q Consensus       396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~-~~~~~~~~~~~  472 (493)
                      |+|.. ++++++.|..|++||.+++.|+.++. |.+.|..+.|+| ++++|+++|.|..++++|+++. ++..+.+|+..
T Consensus       230 WHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd  308 (464)
T KOG0284|consen  230 WHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD  308 (464)
T ss_pred             cCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhh
Confidence            99987 99999999999999999999999986 999999999999 9999999999999999999954 45578999999


Q ss_pred             eEEEEEccCCCE-EEEeecC
Q 011126          473 VSAVCYCPDGKV-RQNSACN  491 (493)
Q Consensus       473 I~sv~~spdG~~-l~s~s~d  491 (493)
                      |+++.|+|-..- |++|+.|
T Consensus       309 v~~~~WhP~~~~lftsgg~D  328 (464)
T KOG0284|consen  309 VTSLTWHPLNESLFTSGGSD  328 (464)
T ss_pred             heeeccccccccceeeccCC
Confidence            999999998764 4555555

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.7e-25  Score=209.74  Aligned_cols=245  Identities=20%  Similarity=0.322  Sum_probs=208.3

Q ss_pred             ccccccc---CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCE
Q 011126          222 RGWLKKL---GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY  298 (493)
Q Consensus       222 ~~w~~~~---~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~  298 (493)
                      ..|..+.   ..+.++...+..+-|+|+-..+++++.|++|++||+.+...       ...+++|++.|..|.|+..|++
T Consensus        92 ~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-------e~~LrGHt~sv~di~~~a~Gk~  164 (406)
T KOG0295|consen   92 ALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-------ERSLRGHTDSVFDISFDASGKY  164 (406)
T ss_pred             hhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-------hhhhhccccceeEEEEecCccE
Confidence            3355542   23566777778899999999999999999999999986654       3358999999999999999999


Q ss_pred             EEEEECCCcEEEEecCC-CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeec
Q 011126          299 LASGGEDGTVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL  377 (493)
Q Consensus       299 Lasgs~Dg~V~iWdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  377 (493)
                      ||+++.|-.+++||..+ .++++.+..+...+.++.+.+.+.                ..+..+.|..+..|+....   
T Consensus       165 l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd----------------~ilS~srD~tik~We~~tg---  225 (406)
T KOG0295|consen  165 LATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD----------------HILSCSRDNTIKAWECDTG---  225 (406)
T ss_pred             EEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCC----------------eeeecccccceeEEecccc---
Confidence            99999999999999977 566777778888888888877652                2345566777777766543   


Q ss_pred             ccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccC--------------CC
Q 011126          378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV--------------DD  441 (493)
Q Consensus       378 ~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~--------------d~  441 (493)
                       -.+.++.+|...|.-++.+.+| ++++++.|.+|++|-+.+++|...+. |..+|-|++|-|.              .+
T Consensus       226 -~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~  304 (406)
T KOG0295|consen  226 -YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGG  304 (406)
T ss_pred             -eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCc
Confidence             3478899999999999999999 99999999999999999999998887 9999999999873              23


Q ss_pred             CEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          442 NYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       442 ~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      .++.+++.|++|++||+.++.++ .+.+|.+.|..++|+|.|+||++.+.||+
T Consensus       305 ~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt  357 (406)
T KOG0295|consen  305 QVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT  357 (406)
T ss_pred             cEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc
Confidence            59999999999999999999877 68999999999999999999999998874

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=1.3e-24  Score=225.50  Aligned_cols=233  Identities=24%  Similarity=0.441  Sum_probs=197.8

Q ss_pred             ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec-
Q 011126          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV-  313 (493)
Q Consensus       235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl-  313 (493)
                      ...+.++.|+|+|.++++++.++.+++|+......     ...+++.+|...|..++|+|++++|++++.|++|+|||+ 
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence            45666799999999999999999999999854332     133345889999999999999999999999999999999 


Q ss_pred             CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (493)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (493)
                      ..+..++.+..|...+.++.|.+.+ .               ..+.++.|..|.+|+.+.    .+++..+.+|...|++
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p~g-~---------------~i~Sgs~D~tvriWd~~~----~~~~~~l~~hs~~is~  293 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSPDG-N---------------LLVSGSDDGTVRIWDVRT----GECVRKLKGHSDGISG  293 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecCCC-C---------------EEEEecCCCcEEEEeccC----CeEEEeeeccCCceEE
Confidence            5568889999999888888887766 2               235678889999999887    5668899999999999


Q ss_pred             EEEeCCC-eEEEEeCCCeEEEEECCCCc--EEEEec-CCC--cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-Ee
Q 011126          394 LSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY  466 (493)
Q Consensus       394 l~~sp~g-~l~sgs~Dg~V~lWd~~~~~--~~~~~~-h~~--~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~  466 (493)
                      ++|++++ +|++++.|+.|+|||+.++.  ++..+. +..  .+++++|+| ++.+|++++.|+.+++||+..+..+ .+
T Consensus       294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  294 LAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             EEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeee
Confidence            9999999 99999999999999999999  566664 333  699999999 9999999999999999999988766 46


Q ss_pred             cCCCC---CeEEEEEccCCCEEEEeecCCC
Q 011126          467 TDIRE---IVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       467 ~~~~~---~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      ..|..   .+.+..+++.|+++++|+.|.+
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~  402 (456)
T KOG0266|consen  373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGS  402 (456)
T ss_pred             cccCCcceeEecccccCCCCeEEEEeCCce
Confidence            66665   4556677899999999988753

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=3.4e-25  Score=224.00  Aligned_cols=238  Identities=20%  Similarity=0.296  Sum_probs=198.2

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECCCcEE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVR  309 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~V~  309 (493)
                      +.+|.+.+.++....+|.+|++|++|.+|++|.+.+...   ...+.+...+|++.|.+++++..+ .+|++++.|++++
T Consensus       361 i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~---~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK  437 (775)
T KOG0319|consen  361 IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS---KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK  437 (775)
T ss_pred             EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc---hhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence            456677777777667789999999999999999854432   223444568999999999998754 4899999999999


Q ss_pred             EEecCCCeee---------eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126          310 VWKVIEHERL---------DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (493)
Q Consensus       310 iWdl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (493)
                      +|++...+..         .....|...+.++.++++.                ....+++.|.++.+|.....    ..
T Consensus       438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd----------------kLiAT~SqDktaKiW~le~~----~l  497 (775)
T KOG0319|consen  438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND----------------KLIATGSQDKTAKIWDLEQL----RL  497 (775)
T ss_pred             EecCCCcccccccceehhhHHHHhhcccccceEecCCC----------------ceEEecccccceeeecccCc----eE
Confidence            9999762211         1223455566666665554                23467888899999988743    34


Q ss_pred             eEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126          381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       381 ~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl  458 (493)
                      ...+.||...|.++.|+|.. .++|+|.|+||+||.+.+..|+++|. |...|..+.|-. ++..|++++.||.|+||++
T Consensus       498 ~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWni  576 (775)
T KOG0319|consen  498 LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNI  576 (775)
T ss_pred             EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEec
Confidence            78899999999999999988 99999999999999999999999998 999999999999 9999999999999999999


Q ss_pred             CCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          459 RRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       459 ~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +++.++ .+..|.+.|++++-+|.+..+++|+.|.
T Consensus       577 kt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg  611 (775)
T KOG0319|consen  577 KTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDG  611 (775)
T ss_pred             cchhhhhhhhhccceeEEEeecCccceeEecCCCe
Confidence            999988 5889999999999999999999999875

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=1.8e-24  Score=224.41  Aligned_cols=238  Identities=24%  Similarity=0.377  Sum_probs=200.3

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (493)
                      ...+.+|...+..++|+|++.++++++.|++|+||++....      ...+++.+|...|++++|+|+|++|++|+.|++
T Consensus       196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t  269 (456)
T KOG0266|consen  196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT  269 (456)
T ss_pred             hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC------eEEEEecCCCCceEEEEecCCCCEEEEecCCCc
Confidence            33447788889999999999999999999999999994332      234578899999999999999999999999999


Q ss_pred             EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (493)
                      |+|||+.+++++..+..+...+..+.+..+..                ....++.++.+.+|+.......  ++..+.++
T Consensus       270 vriWd~~~~~~~~~l~~hs~~is~~~f~~d~~----------------~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~  331 (456)
T KOG0266|consen  270 VRIWDVRTGECVRKLKGHSDGISGLAFSPDGN----------------LLVSASYDGTIRVWDLETGSKL--CLKLLSGA  331 (456)
T ss_pred             EEEEeccCCeEEEeeeccCCceEEEEECCCCC----------------EEEEcCCCccEEEEECCCCcee--eeecccCC
Confidence            99999999999999999999888887766552                2234567889999988776643  34556666


Q ss_pred             CCC--EeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCC---cEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          388 SSE--VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN---YVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       388 ~~~--V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~---~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      ...  ++.+.|+|++ ++++++.|+++++||+..+.++..+. |..   .+.+...++ .+.++++|+.|+.|++||+.+
T Consensus       332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST-GGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC-CCCeEEEEeCCceEEEEeCCc
Confidence            555  9999999999 99999999999999999999988886 554   344555567 899999999999999999998


Q ss_pred             CeEE-EecCC-CCCeEEEEEccCCCEEEEeec
Q 011126          461 CQVV-DYTDI-REIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       461 ~~~~-~~~~~-~~~I~sv~~spdG~~l~s~s~  490 (493)
                      +..+ .+.+| ...+..+.|+|...++++++.
T Consensus       411 ~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~  442 (456)
T KOG0266|consen  411 GGILQRLEGHSKAAVSDLSSHPTENLIASSSF  442 (456)
T ss_pred             cchhhhhcCCCCCceeccccCCCcCeeeecCc
Confidence            7666 57788 889999999999999999873

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.93  E-value=1.5e-25  Score=216.98  Aligned_cols=238  Identities=21%  Similarity=0.336  Sum_probs=197.0

Q ss_pred             ccCceeeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC
Q 011126          227 KLGAMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (493)
Q Consensus       227 ~~~~~~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D  305 (493)
                      .+....+|...+.++.|-| .+.+|++++.|+.|+||++-...      .+.++|.+|..+|.+++|+++|..++|++.|
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD  279 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR------RCLRTFKGHRKPVRDASFNNCGTSFLSASFD  279 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc------ceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence            3456788999999999999 89999999999999999987533      2445789999999999999999999999999


Q ss_pred             CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      +.|++||+++|+++..+.... .+.|+.+.+.+.+               .++.+..++.++.|+.+...+    ++.+.
T Consensus       280 ~~lKlwDtETG~~~~~f~~~~-~~~cvkf~pd~~n---------------~fl~G~sd~ki~~wDiRs~kv----vqeYd  339 (503)
T KOG0282|consen  280 RFLKLWDTETGQVLSRFHLDK-VPTCVKFHPDNQN---------------IFLVGGSDKKIRQWDIRSGKV----VQEYD  339 (503)
T ss_pred             eeeeeeccccceEEEEEecCC-CceeeecCCCCCc---------------EEEEecCCCcEEEEeccchHH----HHHHH
Confidence            999999999999998887653 4567776666532               335677888899999887554    66777


Q ss_pred             cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEE--------------------------------EEe-------
Q 011126          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--------------------------------RVF-------  425 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~--------------------------------~~~-------  425 (493)
                      .|.+.|..|.|-++| ++++.+.|++++||+.+..-.+                                ..|       
T Consensus       340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r  419 (503)
T KOG0282|consen  340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR  419 (503)
T ss_pred             hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence            899999999999999 9999999999999997643221                                111       


Q ss_pred             -------c---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCC-EEEEeecC
Q 011126          426 -------S---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGK-VRQNSACN  491 (493)
Q Consensus       426 -------~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~-~l~s~s~d  491 (493)
                             .   ..++-..+.|+| ||++|++|..||++.+||.++.+++ .+..|..+++.+.|+|.-. .+|+++-+
T Consensus       420 ~nkkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~  496 (503)
T KOG0282|consen  420 LNKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWD  496 (503)
T ss_pred             cCHhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccC
Confidence                   0   235667899999 9999999999999999999999888 5888999999999999864 56666654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=4.7e-24  Score=200.26  Aligned_cols=239  Identities=21%  Similarity=0.256  Sum_probs=194.7

Q ss_pred             ccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126          225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (493)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (493)
                      ...+..+..|.+.+-+++.+|+.+++|+|+.|..-.||+......       .-++.+|+..|+++.|+.+|.+||||+.
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-------~~eltgHKDSVt~~~FshdgtlLATGdm  126 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-------AGELTGHKDSVTCCSFSHDGTLLATGDM  126 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-------eeEecCCCCceEEEEEccCceEEEecCC
Confidence            344456677888888999999999999999999999999886652       2257899999999999999999999999


Q ss_pred             CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                      +|.|+||+..++.....+......+.-+.|.+.                ....+.++.++.+.+|.....    ...+.+
T Consensus       127 sG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~----------------a~illAG~~DGsvWmw~ip~~----~~~kv~  186 (399)
T KOG0296|consen  127 SGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR----------------AHILLAGSTDGSVWMWQIPSQ----ALCKVM  186 (399)
T ss_pred             CccEEEEEcccCceEEEeecccCceEEEEeccc----------------ccEEEeecCCCcEEEEECCCc----ceeeEe
Confidence            999999999999887777644333333333331                123456778888888866542    346778


Q ss_pred             ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEE---------------------------------------
Q 011126          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV---------------------------------------  424 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~---------------------------------------  424 (493)
                      .||..++++=.|.|+| .++++..|++|++|+..+++++..                                       
T Consensus       187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK  266 (399)
T KOG0296|consen  187 SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK  266 (399)
T ss_pred             cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccce
Confidence            9999999999999999 999999999999999877644221                                       


Q ss_pred             ---------------------------------------------------------ecCCCcEEEEEEccCCCCEEEEE
Q 011126          425 ---------------------------------------------------------FSHNNYVTSVAFNPVDDNYFISG  447 (493)
Q Consensus       425 ---------------------------------------------------------~~h~~~V~~v~fsp~d~~~l~sg  447 (493)
                                                                               +.|...|+.+.|-+  ..+|+++
T Consensus       267 Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~  344 (399)
T KOG0296|consen  267 VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTA  344 (399)
T ss_pred             EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheee
Confidence                                                                     12556778888876  5789999


Q ss_pred             eCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          448 SIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       448 s~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +.+|+|++||.++|+++ .+.+|...|..++++|+++++++++.|.
T Consensus       345 c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~  390 (399)
T KOG0296|consen  345 CANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN  390 (399)
T ss_pred             ccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence            99999999999999988 6999999999999999999999998774

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=7.3e-24  Score=214.62  Aligned_cols=229  Identities=25%  Similarity=0.383  Sum_probs=191.8

Q ss_pred             cccccceeccCCCeEEeeec-CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126          236 DRHGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~  314 (493)
                      ..+..++|+..|.+||.|+. -|.+.||+++...-.+       ..++|...|++++++|||+++|+|+.||.|+|||..
T Consensus       308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl-------KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~  380 (893)
T KOG0291|consen  308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL-------KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ  380 (893)
T ss_pred             ceeeEEEecccCCEEEEcCCccceEEEEEeeccceee-------eccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence            45566889999999999765 5899999998654333       247999999999999999999999999999999999


Q ss_pred             CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC-CCCEeE
Q 011126          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLD  393 (493)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~  393 (493)
                      .+-+..++..|...+..+.|...+.                ..+..+-|+++..|+.+.++.    .++|... .-...|
T Consensus       381 SgfC~vTFteHts~Vt~v~f~~~g~----------------~llssSLDGtVRAwDlkRYrN----fRTft~P~p~Qfsc  440 (893)
T KOG0291|consen  381 SGFCFVTFTEHTSGVTAVQFTARGN----------------VLLSSSLDGTVRAWDLKRYRN----FRTFTSPEPIQFSC  440 (893)
T ss_pred             CceEEEEeccCCCceEEEEEEecCC----------------EEEEeecCCeEEeeeecccce----eeeecCCCceeeeE
Confidence            9999999999999888888876653                235667888999998876543    3444442 335678


Q ss_pred             EEEeCCC-eEEEEeCCCe-EEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC-eEEEecCC
Q 011126          394 LSWSKNG-FLLSSSADKT-VRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDI  469 (493)
Q Consensus       394 l~~sp~g-~l~sgs~Dg~-V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~-~~~~~~~~  469 (493)
                      ++..|.| ++.+|+.|.. |.||++++|+.+-.+. |.++|.+++|+| ++..|++|+.|.+||+||+-.. ..+....+
T Consensus       441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i  519 (893)
T KOG0291|consen  441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLEI  519 (893)
T ss_pred             EEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEee
Confidence            9999999 7777777764 9999999999999997 999999999999 9999999999999999999755 34455667


Q ss_pred             CCCeEEEEEccCCCEEEEeecCC
Q 011126          470 REIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       470 ~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ...+++++|+|||+-|+++.-|+
T Consensus       520 ~sdvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  520 RSDVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             ccceeEEEEcCCCCeEEEEEecc
Confidence            78899999999999999988763

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=4e-24  Score=192.58  Aligned_cols=256  Identities=17%  Similarity=0.234  Sum_probs=195.4

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTV  308 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V  308 (493)
                      ...+|...+.+++|+.+|..|++|+.|++++||++.....     .......+|.+.|-.++|+| ...+|++++.|.+|
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i   89 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI   89 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-----hhhhcccCCCcchhhheeCCCCCcceEEecCCceE
Confidence            3445666777899999999999999999999999986522     22335688999999999998 56689999999999


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCC--------CceeeeeccCcccccee-------eeecCCCceEEEcCCCc
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHL--------SQLIPIDVDKEKIDKTK-------SLRKSSDLTCVVLPPKV  373 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-------~~~~s~~~~~~~~~~~~  373 (493)
                      ++||+..+++...+......+ .+.+.+.+.        ..+..++....++....       -+.-..+..+.+.....
T Consensus        90 r~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl  168 (313)
T KOG1407|consen   90 RIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL  168 (313)
T ss_pred             EEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence            999999999988876654433 233333322        22222222211111000       00001111122211111


Q ss_pred             e--ee----cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEE
Q 011126          374 F--RL----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFI  445 (493)
Q Consensus       374 ~--~~----~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~  445 (493)
                      .  .+    .-+|+..+..|.....||.|+|+| +||+|+.|..+.|||+..--|++.|. +.-+|..+.|+. +|++||
T Consensus       169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lA  247 (313)
T KOG1407|consen  169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLA  247 (313)
T ss_pred             ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccceee
Confidence            0  00    247899999999999999999999 99999999999999999999999997 889999999999 999999


Q ss_pred             EEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          446 SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       446 sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +|+.|..|-|=++.+|..+....+.++...|+|+|...+|+-++.|+
T Consensus       248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCC
Confidence            99999999999999999999899999999999999999999888775

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.93  E-value=2.8e-23  Score=199.24  Aligned_cols=234  Identities=25%  Similarity=0.449  Sum_probs=189.6

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+.+|.+.+.+++|+|++++|++++.+|.|++|++....       ....+..|...|..+.|+|++++|++++.||.|+
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~   76 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIR   76 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence            455777888899999999999999999999999987543       2235678999999999999999999999999999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      +|++.+++.+..+..+...+.++.+.+.  ..+              .+....++.+.+|+...    .++...+..|..
T Consensus        77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~--------------~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~  136 (289)
T cd00200          77 LWDLETGECVRTLTGHTSYVSSVAFSPD--GRI--------------LSSSSRDKTIKVWDVET----GKCLTTLRGHTD  136 (289)
T ss_pred             EEEcCcccceEEEeccCCcEEEEEEcCC--CCE--------------EEEecCCCeEEEEECCC----cEEEEEeccCCC
Confidence            9999987777777665555555555443  111              22233466677776653    234566778999


Q ss_pred             CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-e
Q 011126          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y  466 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~  466 (493)
                      .|.+++|+|++ ++++++.|+.|++||++.++.+..+. |...|+++.|+| +++.|++++.||.|++||+++++.+. +
T Consensus       137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~  215 (289)
T cd00200         137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTL  215 (289)
T ss_pred             cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecch
Confidence            99999999988 77777779999999999888888776 777999999999 88899999999999999999888775 4


Q ss_pred             cCCCCCeEEEEEccCCCEEEEeecC
Q 011126          467 TDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       467 ~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ..+...|.+++|+|++.++++++.+
T Consensus       216 ~~~~~~i~~~~~~~~~~~~~~~~~~  240 (289)
T cd00200         216 RGHENGVNSVAFSPDGYLLASGSED  240 (289)
T ss_pred             hhcCCceEEEEEcCCCcEEEEEcCC
Confidence            4788899999999998888887634

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.92  E-value=3.9e-23  Score=198.25  Aligned_cols=232  Identities=26%  Similarity=0.441  Sum_probs=188.3

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd  312 (493)
                      .+...+..+.|.|+++++++++.+|.|++|++....       ....+..|...|.++.|+|+++++++++.|+.|++||
T Consensus        49 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~  121 (289)
T cd00200          49 GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE-------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD  121 (289)
T ss_pred             cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEE
Confidence            344445568999999999999999999999988542       2335678999999999999998999988899999999


Q ss_pred             cCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (493)
Q Consensus       313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (493)
                      +.+++....+..+...+.++.+.+.  ..+              .+.+..++.+.+|+...    .+++..+..|...|.
T Consensus       122 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~--------------l~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~i~  181 (289)
T cd00200         122 VETGKCLTTLRGHTDWVNSVAFSPD--GTF--------------VASSSQDGTIKLWDLRT----GKCVATLTGHTGEVN  181 (289)
T ss_pred             CCCcEEEEEeccCCCcEEEEEEcCc--CCE--------------EEEEcCCCcEEEEEccc----cccceeEecCccccc
Confidence            9988887777755555555555443  111              12223356677776653    244666778999999


Q ss_pred             EEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCC
Q 011126          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDI  469 (493)
Q Consensus       393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~  469 (493)
                      +++|+|++ .+++++.|+.|++||+..++.+..+ .|...+.++.|+| ++.++++++.||.|++||+.+++.+ .+..|
T Consensus       182 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~  260 (289)
T cd00200         182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGH  260 (289)
T ss_pred             eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEcccc
Confidence            99999999 8999999999999999999999888 5888999999999 7889999888999999999987766 46678


Q ss_pred             CCCeEEEEEccCCCEEEEeecCC
Q 011126          470 REIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       470 ~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ...|.+++|+|++++|++++.|+
T Consensus       261 ~~~i~~~~~~~~~~~l~~~~~d~  283 (289)
T cd00200         261 TNSVTSLAWSPDGKRLASGSADG  283 (289)
T ss_pred             CCcEEEEEECCCCCEEEEecCCC
Confidence            88999999999999999998775

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=4.1e-24  Score=212.35  Aligned_cols=236  Identities=19%  Similarity=0.273  Sum_probs=205.0

Q ss_pred             eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (493)
Q Consensus       232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW  311 (493)
                      ..+.+++.++.|||...+++++-..|.|.||++++..       +.+.+.-..-+|++.+|-+..+.+++|+.|..||||
T Consensus        10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-------mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf   82 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-------MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF   82 (794)
T ss_pred             hccCCceeeeecCCCCceEEEeeecCeeEEEecccce-------eeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence            3366889999999999999999999999999998654       334566678899999999999999999999999999


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      +..+++.+..+..|..-+.++...|...                ..++.+.|..+.+|+-..   .-.+.++|.||...|
T Consensus        83 nynt~ekV~~FeAH~DyIR~iavHPt~P----------------~vLtsSDDm~iKlW~we~---~wa~~qtfeGH~HyV  143 (794)
T KOG0276|consen   83 NYNTGEKVKTFEAHSDYIRSIAVHPTLP----------------YVLTSSDDMTIKLWDWEN---EWACEQTFEGHEHYV  143 (794)
T ss_pred             ecccceeeEEeeccccceeeeeecCCCC----------------eEEecCCccEEEEeeccC---ceeeeeEEcCcceEE
Confidence            9999999999999999888887766542                235667777787776432   224478899999999


Q ss_pred             eEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccC-CCCEEEEEeCCCeEEEEeCCCCeEEE-e
Q 011126          392 LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVVD-Y  466 (493)
Q Consensus       392 ~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~IWdl~~~~~~~-~  466 (493)
                      .+++|+|..  .+++++.|+||+||.+.+..+..++. |...|+||.+-|. |..||++|+.|.+|+|||.++.++++ +
T Consensus       144 Mqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL  223 (794)
T KOG0276|consen  144 MQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL  223 (794)
T ss_pred             EEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh
Confidence            999999976  99999999999999999999998886 9999999999882 23499999999999999999999884 7


Q ss_pred             cCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          467 TDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       467 ~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      .+|...|+.++|+|.=.++++|+-|++
T Consensus       224 eGHt~Nvs~v~fhp~lpiiisgsEDGT  250 (794)
T KOG0276|consen  224 EGHTNNVSFVFFHPELPIIISGSEDGT  250 (794)
T ss_pred             hcccccceEEEecCCCcEEEEecCCcc
Confidence            889999999999999999999998764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.92  E-value=1.1e-22  Score=225.87  Aligned_cols=258  Identities=16%  Similarity=0.227  Sum_probs=190.9

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccccccc-ccceeeecccCCEEEEEEcc-CCCEEEEEECCCc
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSL-YTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGT  307 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~-~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~  307 (493)
                      .+..|.+.+.+++|+|+|++||+|+.|+.|+||+........... .....+. +...|.+++|+| ++.+|++++.||+
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence            345577778889999999999999999999999976421111110 1111233 456899999988 5789999999999


Q ss_pred             EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceee---------eeccCccc------------------cceeeeec
Q 011126          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIP---------IDVDKEKI------------------DKTKSLRK  360 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~------------------~~~~~~~~  360 (493)
                      |+|||+.+++.+..+..+...+.++.|.+.....++.         ++......                  .....+.+
T Consensus       557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg  636 (793)
T PLN00181        557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG  636 (793)
T ss_pred             EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence            9999999999888888888777777776533222222         22221110                  01123445


Q ss_pred             CCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCC------cEEEEec-CCCcEEE
Q 011126          361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID------RCLRVFS-HNNYVTS  433 (493)
Q Consensus       361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~------~~~~~~~-h~~~V~~  433 (493)
                      +.++.+.+|+.+...   .++..+.+|...|.++.|.+..+|++++.|++|+|||+...      .++..+. |...+++
T Consensus       637 s~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~  713 (793)
T PLN00181        637 SADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF  713 (793)
T ss_pred             eCCCeEEEEECCCCC---ccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence            667777777765321   24667789999999999985459999999999999999743      4566665 8999999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--------------ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--------------YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~--------------~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ++|+| ++.+|++|+.|++|+||+......+.              ...+...|.+++|+|+|..|++++.++
T Consensus       714 v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG  785 (793)
T PLN00181        714 VGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG  785 (793)
T ss_pred             EEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence            99999 89999999999999999987653321              123455799999999999999998875

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6.7e-24  Score=210.82  Aligned_cols=226  Identities=21%  Similarity=0.300  Sum_probs=192.7

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC-C
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-H  316 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~-~  316 (493)
                      +.+..|-+-.+++++|+.|..|+||++.+..       ..+.|.+|.+-|++|+.+|...+++|++.|-+|++||... .
T Consensus        58 vRa~kfiaRknWiv~GsDD~~IrVfnynt~e-------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w  130 (794)
T KOG0276|consen   58 VRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW  130 (794)
T ss_pred             hhhheeeeccceEEEecCCceEEEEecccce-------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce
Confidence            3446677777899999999999999988544       4567999999999999999999999999999999999965 4


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (493)
                      .+.+++..|..-+.++.+.|...+.+               .+.+-|.++.+|....    ..|..++.||...|+|+.+
T Consensus       131 a~~qtfeGH~HyVMqv~fnPkD~ntF---------------aS~sLDrTVKVWslgs----~~~nfTl~gHekGVN~Vdy  191 (794)
T KOG0276|consen  131 ACEQTFEGHEHYVMQVAFNPKDPNTF---------------ASASLDRTVKVWSLGS----PHPNFTLEGHEKGVNCVDY  191 (794)
T ss_pred             eeeeEEcCcceEEEEEEecCCCccce---------------eeeeccccEEEEEcCC----CCCceeeeccccCcceEEe
Confidence            67778888887777777777665544               3556677888887654    3467889999999999999


Q ss_pred             eCCC---eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCC
Q 011126          397 SKNG---FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIRE  471 (493)
Q Consensus       397 sp~g---~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~  471 (493)
                      -+.|   +|+||+.|.+|+|||.++..|++++. |...|.++.|+| .-.++++|+.||+||||+..+-++.. +.-..+
T Consensus       192 y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle  270 (794)
T KOG0276|consen  192 YTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE  270 (794)
T ss_pred             ccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCcEEEEecCCccEEEecCcceehhhhhhcCCc
Confidence            9887   99999999999999999999999997 999999999999 88999999999999999999888774 555567


Q ss_pred             CeEEEEEccCCCEEEEeec
Q 011126          472 IVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       472 ~I~sv~~spdG~~l~s~s~  490 (493)
                      .|++|+-.+.+..+++|..
T Consensus       271 RvW~I~~~k~~~~i~vG~D  289 (794)
T KOG0276|consen  271 RVWCIAAHKGDGKIAVGFD  289 (794)
T ss_pred             eEEEEeecCCCCeEEEecc
Confidence            8999998888888777653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=3.4e-24  Score=197.93  Aligned_cols=236  Identities=26%  Similarity=0.395  Sum_probs=189.8

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCCccccccccc-cceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLY-TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~-~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~  314 (493)
                      ..+.|..|+|||++|++|+.||-|.||++.+++....--+ ....|.-|..+|.||.|+.|...||+|+.||.|+||.+.
T Consensus       214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~  293 (508)
T KOG0275|consen  214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE  293 (508)
T ss_pred             cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence            4456789999999999999999999999976553222111 223456689999999999999999999999999999999


Q ss_pred             CCeeeeeee-ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126          315 EHERLDGFD-VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (493)
Q Consensus       315 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (493)
                      +|.+++.+. .+...+.|+.|+.++...                +.++.+..+.+.-.+.    .+.+..+.||+..|+.
T Consensus       294 tG~ClRrFdrAHtkGvt~l~FSrD~Sqi----------------LS~sfD~tvRiHGlKS----GK~LKEfrGHsSyvn~  353 (508)
T KOG0275|consen  294 TGQCLRRFDRAHTKGVTCLSFSRDNSQI----------------LSASFDQTVRIHGLKS----GKCLKEFRGHSSYVNE  353 (508)
T ss_pred             cchHHHHhhhhhccCeeEEEEccCcchh----------------hcccccceEEEecccc----chhHHHhcCccccccc
Confidence            999999987 677778888876655322                2333344444333332    4568889999999999


Q ss_pred             EEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec-
Q 011126          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT-  467 (493)
Q Consensus       394 l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~-  467 (493)
                      ..|.++| ++++++.||+|++|+.++..|+.+|+   ...+|+++..-|.+...++.+...++|+|.++. |+++. +. 
T Consensus       354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsS  432 (508)
T KOG0275|consen  354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSS  432 (508)
T ss_pred             eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeecc
Confidence            9999999 99999999999999999999999997   556899999999889999999999999999996 45553 32 


Q ss_pred             --CCCCCeEEEEEccCCCEEEEeecCC
Q 011126          468 --DIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       468 --~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                        ...+...+.+.+|-|.++.+.+-|+
T Consensus       433 GkREgGdFi~~~lSpkGewiYcigED~  459 (508)
T KOG0275|consen  433 GKREGGDFINAILSPKGEWIYCIGEDG  459 (508)
T ss_pred             CCccCCceEEEEecCCCcEEEEEccCc
Confidence              2334567788999999999988776

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=6.2e-23  Score=212.74  Aligned_cols=198  Identities=14%  Similarity=0.198  Sum_probs=157.0

Q ss_pred             ceeeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECCCc
Q 011126          230 AMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGT  307 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~  307 (493)
                      .+.+|.+.+.+++|+| ++.+|++|+.|++|+||++...............+.+|...|.+++|+|++ ++|++|+.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            3567888899999999 889999999999999999975432111122345688999999999999975 69999999999


Q ss_pred             EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (493)
                      |+|||+.+++.                                                              +..+.+|
T Consensus       150 VrIWDl~tg~~--------------------------------------------------------------~~~l~~h  167 (493)
T PTZ00421        150 VNVWDVERGKA--------------------------------------------------------------VEVIKCH  167 (493)
T ss_pred             EEEEECCCCeE--------------------------------------------------------------EEEEcCC
Confidence            99999976542                                                              2335678


Q ss_pred             CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCc-EEEEEEccCCCCEEEEEe----CCCeEEEEeCCC
Q 011126          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY-VTSVAFNPVDDNYFISGS----IDGKVRIWEVRR  460 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~-V~~v~fsp~d~~~l~sgs----~Dg~V~IWdl~~  460 (493)
                      ...|.+++|+|+| +|++++.|++|+|||+++++.+..+. |... +..+.|.| ++.+|++++    .|+.|++||+++
T Consensus       168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCC
Confidence            8999999999999 99999999999999999999888775 6554 45788999 767776654    479999999986


Q ss_pred             Ce-EEEe--cCCCCCeEEEEEccCCCEEEEeec
Q 011126          461 CQ-VVDY--TDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       461 ~~-~~~~--~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      .. .+..  ......+....|+|++++|++++.
T Consensus       247 ~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk  279 (493)
T PTZ00421        247 MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK  279 (493)
T ss_pred             CCCceeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence            53 3332  233445667789999999988874

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.91  E-value=1.1e-23  Score=197.10  Aligned_cols=194  Identities=22%  Similarity=0.373  Sum_probs=168.7

Q ss_pred             eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceee
Q 011126          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (493)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (493)
                      ..+.+|.+.|.|+++.|..+++++|+.|++|+|||+.+++...++..+...+..+.++..+.                ..
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp----------------Yl  208 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP----------------YL  208 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc----------------eE
Confidence            35789999999999999999999999999999999999999999988877777776655442                23


Q ss_pred             eecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEE
Q 011126          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVA  435 (493)
Q Consensus       358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~  435 (493)
                      +....+..+..|+...    .+.++.+.||-..|.||+.+|.- .|+||+.|.++||||+++...+.++. |..+|..+.
T Consensus       209 Fs~gedk~VKCwDLe~----nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~  284 (460)
T KOG0285|consen  209 FSAGEDKQVKCWDLEY----NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM  284 (460)
T ss_pred             EEecCCCeeEEEechh----hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence            4556667777777653    34578889999999999999987 99999999999999999999999997 999999999


Q ss_pred             EccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          436 FNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       436 fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +.| .+..+++|+.|++|++||++.++.+ ....|+..|.+++.+|.-..+++++.|.
T Consensus       285 ~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn  341 (460)
T KOG0285|consen  285 CQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN  341 (460)
T ss_pred             eec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc
Confidence            999 5566899999999999999988765 6889999999999999999999988763

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.9e-23  Score=197.47  Aligned_cols=259  Identities=18%  Similarity=0.257  Sum_probs=186.4

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+..|.+.+.-+.|+++|++||+++.|.+..+|.+.....    +...+++.+|..+|..|.||||.+||++|+.|..++
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~  294 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS  294 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence            3556777788899999999999999999999999865442    445668899999999999999999999999999999


Q ss_pred             EEecCCCeeeeeeecc-CCCCceEEEeeCCCCce--------eeeeccCccccc--------eeeeecCCCceEEEc--C
Q 011126          310 VWKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQL--------IPIDVDKEKIDK--------TKSLRKSSDLTCVVL--P  370 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--------~~~~~~s~~~~~~~~--~  370 (493)
                      +||+.++.....+... ...+.++.|.+++...+        +.++.+.+....        ...+.-+.|+.-++.  .
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~  374 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV  374 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence            9999999988777655 55667777777665422        222222222111        111222222221111  1


Q ss_pred             CCceeec---ccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-C--CCcEEEEEEccCCCCE
Q 011126          371 PKVFRLL---EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-H--NNYVTSVAFNPVDDNY  443 (493)
Q Consensus       371 ~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h--~~~V~~v~fsp~d~~~  443 (493)
                      .+...+.   ...-..+.....+|++++.|.++ ++++.-.+..|++||+.....+..+. |  ..++..-+|--.+..+
T Consensus       375 d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f  454 (519)
T KOG0293|consen  375 DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF  454 (519)
T ss_pred             ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence            1111111   11111233456788999999999 77777788999999998766665553 3  4567777887767789


Q ss_pred             EEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCE-EEEeecCC
Q 011126          444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKV-RQNSACNF  492 (493)
Q Consensus       444 l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~-l~s~s~d~  492 (493)
                      +++|+.|++|+||+..+++++ .+.+|...|++|+|+|.... +|+++.|+
T Consensus       455 iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg  505 (519)
T KOG0293|consen  455 IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG  505 (519)
T ss_pred             EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC
Confidence            999999999999999999988 58999999999999998765 55555554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.91  E-value=1.2e-24  Score=202.55  Aligned_cols=217  Identities=22%  Similarity=0.364  Sum_probs=179.4

Q ss_pred             eeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeee
Q 011126          242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG  321 (493)
Q Consensus       242 ~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~  321 (493)
                      ++--|+..+++|..|.+|+|||..       .+.+...+.||++.|.|+.|.  .+.|++|+.|.+|+|||+++++++.+
T Consensus       202 ClQYDD~kiVSGlrDnTikiWD~n-------~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t  272 (499)
T KOG0281|consen  202 CLQYDDEKIVSGLRDNTIKIWDKN-------SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT  272 (499)
T ss_pred             EEEecchhhhcccccCceEEeccc-------cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH
Confidence            345567789999999999999976       444556789999999999995  56999999999999999999999988


Q ss_pred             eeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCe
Q 011126          322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF  401 (493)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  401 (493)
                      +-.+...+..+.|+.                  ...++.+.+..+.+|+..... .....+.+.||...|+.+.|+.. +
T Consensus       273 lihHceaVLhlrf~n------------------g~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd~k-y  332 (499)
T KOG0281|consen  273 LIHHCEAVLHLRFSN------------------GYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFDDK-Y  332 (499)
T ss_pred             HhhhcceeEEEEEeC------------------CEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccccc-e
Confidence            877766554444422                  223456677788888765443 23445667899999999999765 9


Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEc
Q 011126          402 LLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYC  479 (493)
Q Consensus       402 l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~s  479 (493)
                      +++++.|.+|++|++.++++++++. |...|.|+++   .++++++|+.|.+|++||+..|.++. +.+|.+-|.++.| 
T Consensus       333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF-  408 (499)
T KOG0281|consen  333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-  408 (499)
T ss_pred             EEEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee-
Confidence            9999999999999999999999996 9999999998   67999999999999999999999885 7889999999888 


Q ss_pred             cCCCEEEEeecCC
Q 011126          480 PDGKVRQNSACNF  492 (493)
Q Consensus       480 pdG~~l~s~s~d~  492 (493)
                       |.+.+++|+-|+
T Consensus       409 -d~krIVSGaYDG  420 (499)
T KOG0281|consen  409 -DNKRIVSGAYDG  420 (499)
T ss_pred             -cCceeeeccccc
Confidence             567788887664

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=6e-23  Score=210.85  Aligned_cols=246  Identities=19%  Similarity=0.289  Sum_probs=199.5

Q ss_pred             hccccccccCc----eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC
Q 011126          220 VKRGWLKKLGA----MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD  295 (493)
Q Consensus       220 ~k~~w~~~~~~----~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd  295 (493)
                      +...|.-+.+.    ...|.+.+..+.|||.+.++++|+.|..|+||+++.....       -++.||-+-|..+.|++.
T Consensus        32 ~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl-------ftL~GHlDYVRt~~FHhe  104 (1202)
T KOG0292|consen   32 VIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL-------FTLLGHLDYVRTVFFHHE  104 (1202)
T ss_pred             eeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh-------hhhccccceeEEeeccCC
Confidence            33445544333    5567788888999999999999999999999999866533       357899999999999999


Q ss_pred             CCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee
Q 011126          296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR  375 (493)
Q Consensus       296 g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  375 (493)
                      -.+|+|++.|-+||||+..+.+++..+..|..-+.|..|.+...                ...+++-|.++.+|+....+
T Consensus       105 yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED----------------lIVSaSLDQTVRVWDisGLR  168 (1202)
T KOG0292|consen  105 YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED----------------LIVSASLDQTVRVWDISGLR  168 (1202)
T ss_pred             CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc----------------eEEEecccceEEEEeecchh
Confidence            99999999999999999999999999998887777777765442                22355666677777664332


Q ss_pred             ecc-------------------------cceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEE--E-ec
Q 011126          376 LLE-------------------------KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--V-FS  426 (493)
Q Consensus       376 ~~~-------------------------~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~--~-~~  426 (493)
                      ...                         -..+.+.||...|+-++|+|.- ++++|+.|..|++|.+...+.-.  + ..
T Consensus       169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrg  248 (1202)
T KOG0292|consen  169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRG  248 (1202)
T ss_pred             ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhc
Confidence            211                         1134678999999999999998 99999999999999987544322  2 24


Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEee
Q 011126          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      |.+.|.++-|+| ..+++++.|.|++|+|||+...+.+. +....+..+.++-+|..+.+++|-
T Consensus       249 H~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH  311 (1202)
T KOG0292|consen  249 HYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH  311 (1202)
T ss_pred             ccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec
Confidence            999999999999 99999999999999999999888774 666778899999999999887764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.90  E-value=4.6e-22  Score=179.88  Aligned_cols=241  Identities=15%  Similarity=0.186  Sum_probs=191.1

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+.+|...+..+.++.+|.+|.+++.|.++.||-..++.       ..-++.||++.|+++..+.+.++|++|+.|.+++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-------rlGty~GHtGavW~~Did~~s~~liTGSAD~t~k   77 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-------RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAK   77 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-------eeeeecCCCceEEEEEecCCcceeeeccccceeE
Confidence            356677788889999999999999999999999764333       2336899999999999999999999999999999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc---eeecccceEEEec
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV---FRLLEKPLHEFQG  386 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~~~~~~~~~~~~  386 (493)
                      +||+.+|+++..++.+. ++..+.|...+...++..+-..+           ....+.+++.+.   -...+.|+..+..
T Consensus        78 LWDv~tGk~la~~k~~~-~Vk~~~F~~~gn~~l~~tD~~mg-----------~~~~v~~fdi~~~~~~~~s~ep~~kI~t  145 (327)
T KOG0643|consen   78 LWDVETGKQLATWKTNS-PVKRVDFSFGGNLILASTDKQMG-----------YTCFVSVFDIRDDSSDIDSEEPYLKIPT  145 (327)
T ss_pred             EEEcCCCcEEEEeecCC-eeEEEeeccCCcEEEEEehhhcC-----------cceEEEEEEccCChhhhcccCceEEecC
Confidence            99999999999888753 34445555544333333221111           111222222221   1123467888888


Q ss_pred             CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-c-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       387 h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      +...++.+-|.|-+ .|++|..||.|.+||++++..+..- . |...|+.++++| +..+|++++.|.+-++||..+-++
T Consensus       146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v  224 (327)
T KOG0643|consen  146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEV  224 (327)
T ss_pred             CccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceee
Confidence            99999999999999 9999999999999999998655443 3 999999999999 999999999999999999999999


Q ss_pred             EEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          464 VDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       464 ~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ++......+|++.+++|--..++.|+.
T Consensus       225 ~Kty~te~PvN~aaisP~~d~VilgGG  251 (327)
T KOG0643|consen  225 LKTYTTERPVNTAAISPLLDHVILGGG  251 (327)
T ss_pred             EEEeeecccccceecccccceEEecCC
Confidence            988888899999999998877776653

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=7.5e-23  Score=210.13  Aligned_cols=229  Identities=20%  Similarity=0.298  Sum_probs=193.5

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~  315 (493)
                      .++..++|||...+++++-..|.|++||++-..       ....|..|.++|..+.|+|++.+++|||.|-.|+||+..+
T Consensus        10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen   10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             ccccceecCCCCCEEEEeecCceeeeehhhhhh-------HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            456669999999999999999999999998433       3346789999999999999999999999999999999999


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      .+++.++..|-.-+..+.|..                ...++++.+.|.++.+|+...    .+.+..+.||...|.|..
T Consensus        83 rrclftL~GHlDYVRt~~FHh----------------eyPWIlSASDDQTIrIWNwqs----r~~iavltGHnHYVMcAq  142 (1202)
T KOG0292|consen   83 RRCLFTLLGHLDYVRTVFFHH----------------EYPWILSASDDQTIRIWNWQS----RKCIAVLTGHNHYVMCAQ  142 (1202)
T ss_pred             ceehhhhccccceeEEeeccC----------------CCceEEEccCCCeEEEEeccC----CceEEEEecCceEEEeec
Confidence            999999888877666665533                234567788899999987654    467899999999999999


Q ss_pred             EeCCC-eEEEEeCCCeEEEEECCCCc---------------------------E-E-EEe-cCCCcEEEEEEccCCCCEE
Q 011126          396 WSKNG-FLLSSSADKTVRLWQVGIDR---------------------------C-L-RVF-SHNNYVTSVAFNPVDDNYF  444 (493)
Q Consensus       396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~---------------------------~-~-~~~-~h~~~V~~v~fsp~d~~~l  444 (493)
                      |+|.. .++++|.|.+|||||+..-+                           + + +.+ +|...|+.++|+| .-.+|
T Consensus       143 FhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-Tlpli  221 (1202)
T KOG0292|consen  143 FHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLI  221 (1202)
T ss_pred             cCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceE
Confidence            99977 99999999999999985210                           0 1 112 2888999999999 88999


Q ss_pred             EEEeCCCeEEEEeCCCCeEE---EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          445 ISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       445 ~sgs~Dg~V~IWdl~~~~~~---~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ++|+.|..|++|.+...+.-   ...+|.+.|+++-|+|.-..+++.+-|+
T Consensus       222 VSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDk  272 (1202)
T KOG0292|consen  222 VSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDK  272 (1202)
T ss_pred             EecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCc
Confidence            99999999999999865543   4789999999999999999999998876

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.90  E-value=1.1e-22  Score=187.11  Aligned_cols=217  Identities=17%  Similarity=0.339  Sum_probs=164.3

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCc------cc-----cccccccceeeecccCCEEEEEEccCCCE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQ------SR-----ELSSLYTGQEFLAHEGSILTMKFSLDGQY  298 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~------~~-----~~~~~~~~~~l~~H~~~I~~l~fspdg~~  298 (493)
                      -++.|...+.+.+|+|||.++|+|+.|..|+|.|++..      ..     .-..-....++..|.+.|+++.|+|....
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI  186 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence            35667777778999999999999999999999998721      11     01112344678899999999999999999


Q ss_pred             EEEEECCCcEEEEecCCCeeeeeeeccC--CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126          299 LASGGEDGTVRVWKVIEHERLDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (493)
Q Consensus       299 Lasgs~Dg~V~iWdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  376 (493)
                      |++|+.|++|+++|+......+.++...  .++.++.|.+.+  .++              +.+.....+.+++...++.
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efl--------------lvgTdHp~~rlYdv~T~Qc  250 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFL--------------LVGTDHPTLRLYDVNTYQC  250 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceE--------------EEecCCCceeEEeccceeE
Confidence            9999999999999997665544444332  234444444443  222              2333444555555554433


Q ss_pred             cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--C-CCcEEEEEEccCCCCEEEEEeCCCe
Q 011126          377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--H-NNYVTSVAFNPVDDNYFISGSIDGK  452 (493)
Q Consensus       377 ~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h-~~~V~~v~fsp~d~~~l~sgs~Dg~  452 (493)
                      .-... .-.+|++.|+++.+++.+ +.+|++.||.|+|||--+++|+.+|.  | ...|.+..|.. +++|+++.+.|..
T Consensus       251 fvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~  328 (430)
T KOG0640|consen  251 FVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDST  328 (430)
T ss_pred             eeecC-cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcce
Confidence            21111 235699999999999999 99999999999999999999999997  5 46899999999 9999999999999


Q ss_pred             EEEEeCCCCeEE
Q 011126          453 VRIWEVRRCQVV  464 (493)
Q Consensus       453 V~IWdl~~~~~~  464 (493)
                      |++|.+.+++.+
T Consensus       329 vkLWEi~t~R~l  340 (430)
T KOG0640|consen  329 VKLWEISTGRML  340 (430)
T ss_pred             eeeeeecCCceE
Confidence            999999877543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.90  E-value=7.4e-22  Score=193.09  Aligned_cols=237  Identities=18%  Similarity=0.277  Sum_probs=187.8

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC--CcE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED--GTV  308 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D--g~V  308 (493)
                      .+.|...+.-+.++|.|.|+|+|...|.|+||+.......+     ..+++.-.++|..|+|+.++++|+..++-  ...
T Consensus        55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiL-----Knef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg  129 (603)
T KOG0318|consen   55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHIL-----KNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG  129 (603)
T ss_pred             eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceee-----eeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence            34454555558899999999999999999999987544333     23677788999999999999999887653  334


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      +++-..++..+..+..+...+..+.+.+               ...++..+++.|..+.++.-..|+.    ..++..|.
T Consensus       130 ~~F~~DSG~SvGei~GhSr~ins~~~Kp---------------sRPfRi~T~sdDn~v~ffeGPPFKF----k~s~r~Hs  190 (603)
T KOG0318|consen  130 HVFLWDSGNSVGEITGHSRRINSVDFKP---------------SRPFRIATGSDDNTVAFFEGPPFKF----KSSFREHS  190 (603)
T ss_pred             EEEEecCCCccceeeccceeEeeeeccC---------------CCceEEEeccCCCeEEEeeCCCeee----eecccccc
Confidence            4444446776777776665554444433               2345566788888888886655544    45567799


Q ss_pred             CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      .-|.|+.|+|+| ++++.+.||+|.|||-.+++.+..+.    |.+.|.+++|+| |+..|+|++.|.+++|||+.+.++
T Consensus       191 kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~sl  269 (603)
T KOG0318|consen  191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSL  269 (603)
T ss_pred             cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccce
Confidence            999999999999 99999999999999999999999996    999999999999 999999999999999999976543


Q ss_pred             E--------------------------------------------EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          464 V--------------------------------------------DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       464 ~--------------------------------------------~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +                                            ...+|...|+++..+|||++|++++.|+
T Consensus       270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG  342 (603)
T KOG0318|consen  270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG  342 (603)
T ss_pred             EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence            2                                            1235778899999999999999999875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.2e-21  Score=171.47  Aligned_cols=239  Identities=20%  Similarity=0.333  Sum_probs=178.3

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCCccccc--------cccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSREL--------SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~--------~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (493)
                      ..+.+++|+|.|.+.|+|+...+.+|..+.......        .+....+.-+.|.+.|+|.+|+|+|++|++|+.|++
T Consensus        33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~  112 (350)
T KOG0641|consen   33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT  112 (350)
T ss_pred             hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence            456679999999999999999999998765422210        011112334679999999999999999999999999


Q ss_pred             EEEEecCCCeee-----eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126          308 VRVWKVIEHERL-----DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (493)
Q Consensus       308 V~iWdl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (493)
                      |++..++...+.     ..+..+...+..+.|..+....           .......+..+-.+++.+-.    ..++++
T Consensus       113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~-----------~~il~s~gagdc~iy~tdc~----~g~~~~  177 (350)
T KOG0641|consen  113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESG-----------GAILASAGAGDCKIYITDCG----RGQGFH  177 (350)
T ss_pred             EEEEecccccccccCcceeeeecCCceeeeEEecCCCcC-----------ceEEEecCCCcceEEEeecC----CCCcce
Confidence            999877544321     2344444444444444333221           11112223333333333322    246688


Q ss_pred             EEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---C-----CCcEEEEEEccCCCCEEEEEeCCCeE
Q 011126          383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---H-----NNYVTSVAFNPVDDNYFISGSIDGKV  453 (493)
Q Consensus       383 ~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h-----~~~V~~v~fsp~d~~~l~sgs~Dg~V  453 (493)
                      .+.||++.|..+ ++-+| ++++|+.|++||+||++...++.++.   |     ...|.+++..| .|++|++|-.|..-
T Consensus       178 a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc  255 (350)
T KOG0641|consen  178 ALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSC  255 (350)
T ss_pred             eecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCce
Confidence            899999999987 33456 99999999999999999999999885   2     36799999999 99999999999999


Q ss_pred             EEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          454 RIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       454 ~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      .+||++.++++ .+..|...|.++.|+|...|+++++-|
T Consensus       256 ~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd  294 (350)
T KOG0641|consen  256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD  294 (350)
T ss_pred             EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEeccc
Confidence            99999999988 488999999999999999999998755

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2.8e-22  Score=194.74  Aligned_cols=231  Identities=20%  Similarity=0.280  Sum_probs=192.2

Q ss_pred             eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEe
Q 011126          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWd  312 (493)
                      ..+.+.++.|..||.+||+|...|.|+|+|.+...       ....+++|+.+|..+.|+| ++..|++|+.|+.+++||
T Consensus        67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d  139 (487)
T KOG0310|consen   67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD  139 (487)
T ss_pred             hccceeEEEeecCCeEEEccCCcCcEEEeccccHH-------HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence            34667779999999999999999999999955421       1234789999999999999 456788999999999999


Q ss_pred             cCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (493)
Q Consensus       313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (493)
                      +.+......+..+..-+.|..+.+....               ..++++.|+.+.+|+.+...   .++.+ ..|..+|.
T Consensus       140 ~s~a~v~~~l~~htDYVR~g~~~~~~~h---------------ivvtGsYDg~vrl~DtR~~~---~~v~e-lnhg~pVe  200 (487)
T KOG0310|consen  140 LSTAYVQAELSGHTDYVRCGDISPANDH---------------IVVTGSYDGKVRLWDTRSLT---SRVVE-LNHGCPVE  200 (487)
T ss_pred             cCCcEEEEEecCCcceeEeeccccCCCe---------------EEEecCCCceEEEEEeccCC---ceeEE-ecCCCcee
Confidence            9999876678888888888777665533               34578899999999987643   22333 45899999


Q ss_pred             EEEEeCCC-eEEEEeCCCeEEEEECCCC-cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC
Q 011126          393 DLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI  469 (493)
Q Consensus       393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~  469 (493)
                      .+.+-|.| ++++++. ..|+|||+-++ +.+..+. |...|||+.+.. ++..|++|+.|+.|+|||+.+.+++.-...
T Consensus       201 ~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~  278 (487)
T KOG0310|consen  201 SVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWKY  278 (487)
T ss_pred             eEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEeeec
Confidence            99999998 7777764 67999999855 4444444 999999999999 899999999999999999999999988888


Q ss_pred             CCCeEEEEEccCCCEEEEeecCC
Q 011126          470 REIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       470 ~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      .++|.+++.+||++.+++|..++
T Consensus       279 ~~pvLsiavs~dd~t~viGmsnG  301 (487)
T KOG0310|consen  279 PGPVLSIAVSPDDQTVVIGMSNG  301 (487)
T ss_pred             ccceeeEEecCCCceEEEecccc
Confidence            99999999999999999998765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=3.5e-22  Score=177.59  Aligned_cols=249  Identities=20%  Similarity=0.237  Sum_probs=194.0

Q ss_pred             ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (493)
Q Consensus       227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (493)
                      +...+.|+..++..+.|+-+|+|.++++.|.+|++|+.....       ..+++.+|...|..++.+.|...+++|+.|.
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-------liktYsghG~EVlD~~~s~Dnskf~s~GgDk   81 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-------LIKTYSGHGHEVLDAALSSDNSKFASCGGDK   81 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-------eeeeecCCCceeeeccccccccccccCCCCc
Confidence            344577888999999999999999999999999999976443       4567899999999999999999999999999


Q ss_pred             cEEEEecCCCeeeeeeeccCCCCceEEEeeCC--------CCceeeeeccCc------------------cccceeeeec
Q 011126          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINH--------LSQLIPIDVDKE------------------KIDKTKSLRK  360 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~------------------~~~~~~~~~~  360 (493)
                      .|.+||+.+|+..+.+..|...+..+.|....        ...+..++.-..                  .+....++.+
T Consensus        82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaG  161 (307)
T KOG0316|consen   82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAG  161 (307)
T ss_pred             eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEee
Confidence            99999999999999999988877776654322        111222221111                  1122334667


Q ss_pred             CCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CC--CcEEEEEE
Q 011126          361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HN--NYVTSVAF  436 (493)
Q Consensus       361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~--~~V~~v~f  436 (493)
                      +.++++..++.+...+..      .--..+|++++|++++ .++.++.|++|++.|-.+++.++.+. |.  .+-...++
T Consensus       162 S~DGtvRtydiR~G~l~s------Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l  235 (307)
T KOG0316|consen  162 SVDGTVRTYDIRKGTLSS------DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL  235 (307)
T ss_pred             ccCCcEEEEEeecceeeh------hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence            777887777776554321      1235689999999999 88999999999999999999998886 54  45566778


Q ss_pred             ccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCC-eEEEEEccCCCEEEEee
Q 011126          437 NPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREI-VSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       437 sp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~-I~sv~~spdG~~l~s~s  489 (493)
                      +. ....+++|+.||.|++||+-...++. +..+... |+++.++|.-..+++++
T Consensus       236 ~q-sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~  289 (307)
T KOG0316|consen  236 NQ-SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT  289 (307)
T ss_pred             cc-cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec
Confidence            87 78899999999999999999988774 5555555 89999999876665554

>PTZ00421 coronin; Provisional

Probab=99.89  E-value=1.4e-21  Score=202.64  Aligned_cols=199  Identities=21%  Similarity=0.276  Sum_probs=153.4

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCCccccccc------cccceeeecccCCEEEEEEcc-CCCEEEEEECCCcE
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS------LYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTV  308 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~------~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V  308 (493)
                      ..+.....++++..+++++.+..+..|+.......+..      ......+.+|.+.|++++|+| ++++|++|+.|++|
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI  100 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI  100 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence            33444556677666677766776677765433211100      011224789999999999999 88999999999999


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      +|||+.++.....                                                       ...++..+.+|.
T Consensus       101 kIWdi~~~~~~~~-------------------------------------------------------~~~~l~~L~gH~  125 (493)
T PTZ00421        101 MGWGIPEEGLTQN-------------------------------------------------------ISDPIVHLQGHT  125 (493)
T ss_pred             EEEecCCCccccc-------------------------------------------------------cCcceEEecCCC
Confidence            9999865421100                                                       012356678999


Q ss_pred             CCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 011126          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-  464 (493)
Q Consensus       389 ~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-  464 (493)
                      ..|.+++|+|.+  +|++++.|++|+|||+.+++.+..+. |...|++++|+| ++.+|++++.|++|+|||+++++.+ 
T Consensus       126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~  204 (493)
T PTZ00421        126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVS  204 (493)
T ss_pred             CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEE
Confidence            999999999975  89999999999999999999888886 899999999999 9999999999999999999998876 


Q ss_pred             EecCCCCC-eEEEEEccCCCEEEEeec
Q 011126          465 DYTDIREI-VSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       465 ~~~~~~~~-I~sv~~spdG~~l~s~s~  490 (493)
                      .+..|... +..+.|.|++..+++++.
T Consensus       205 tl~~H~~~~~~~~~w~~~~~~ivt~G~  231 (493)
T PTZ00421        205 SVEAHASAKSQRCLWAKRKDLIITLGC  231 (493)
T ss_pred             EEecCCCCcceEEEEcCCCCeEEEEec
Confidence            45666554 457789999888877653

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=4.8e-22  Score=204.79  Aligned_cols=239  Identities=19%  Similarity=0.243  Sum_probs=186.1

Q ss_pred             cee-eeecccccceeccCCCeEEeeecCCeEEEEECCCccc---------------------------c--c----c---
Q 011126          230 AMA-RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR---------------------------E--L----S---  272 (493)
Q Consensus       230 ~~~-~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~---------------------------~--~----~---  272 (493)
                      .+. .|.+.|.++.|++||+|||+|+.|+.|+||.+.....                           .  .    .   
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            344 6778888899999999999999999999998865000                           0  0    0   


Q ss_pred             -----------------ccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEe
Q 011126          273 -----------------SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT  335 (493)
Q Consensus       273 -----------------~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~  335 (493)
                                       .-.+..+|.||.+.|..|.|+.++ +|++++.|.+||+|++...+++..|.. ..-++|++|.
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~H-ndfVTcVaFn  418 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSH-NDFVTCVAFN  418 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEec-CCeeEEEEec
Confidence                             001123588999999999999765 899999999999999999998888764 4457888887


Q ss_pred             eCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEE
Q 011126          336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLW  414 (493)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lW  414 (493)
                      |.....               ++.++-|+.+.+|.+...+     +.....-..-|++++|.|+| ..+.|+.+|.+++|
T Consensus       419 PvDDry---------------FiSGSLD~KvRiWsI~d~~-----Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY  478 (712)
T KOG0283|consen  419 PVDDRY---------------FISGSLDGKVRLWSISDKK-----VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFY  478 (712)
T ss_pred             ccCCCc---------------EeecccccceEEeecCcCe-----eEeehhhhhhheeEEeccCCceEEEEEeccEEEEE
Confidence            766543               4577888888888764322     33333334789999999999 99999999999999


Q ss_pred             ECCCCcEEEEec----------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCC--CeEEEEEccC
Q 011126          415 QVGIDRCLRVFS----------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIRE--IVSAVCYCPD  481 (493)
Q Consensus       415 d~~~~~~~~~~~----------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~--~I~sv~~spd  481 (493)
                      +....+....+.          |. .||.++|.|.+...+++.+.|.+|||+|+++.+++ .+.++..  .-....|+.|
T Consensus       479 ~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~D  557 (712)
T KOG0283|consen  479 DTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSD  557 (712)
T ss_pred             EccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccC
Confidence            998877665553          33 79999999977777888899999999999988877 3544432  3456789999


Q ss_pred             CCEEEEeecC
Q 011126          482 GKVRQNSACN  491 (493)
Q Consensus       482 G~~l~s~s~d  491 (493)
                      |++|++++-|
T Consensus       558 gk~IVs~seD  567 (712)
T KOG0283|consen  558 GKHIVSASED  567 (712)
T ss_pred             CCEEEEeecC
Confidence            9999999855

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.89  E-value=2.6e-22  Score=191.13  Aligned_cols=233  Identities=19%  Similarity=0.275  Sum_probs=184.5

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (493)
                      ++.+.+....+..+.|.++++++++++.|+.+++|++....       ...++.+|++.|+++.|......+++|+.|.+
T Consensus       212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r-------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRt  284 (459)
T KOG0288|consen  212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR-------LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRT  284 (459)
T ss_pred             hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh-------hhhhhcccccceeeehhhccccceeeccccch
Confidence            34566677778889999999999999999999999987443       33468899999999999887767999999999


Q ss_pred             EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (493)
                      |++||+....+.+++.....   |..+..                .....+.+..+.++..|+.+...    +......|
T Consensus       285 iK~WDl~k~~C~kt~l~~S~---cnDI~~----------------~~~~~~SgH~DkkvRfwD~Rs~~----~~~sv~~g  341 (459)
T KOG0288|consen  285 IKLWDLQKAYCSKTVLPGSQ---CNDIVC----------------SISDVISGHFDKKVRFWDIRSAD----KTRSVPLG  341 (459)
T ss_pred             hhhhhhhhhheecccccccc---ccceEe----------------cceeeeecccccceEEEeccCCc----eeeEeecC
Confidence            99999998777665432211   111100                02334566677778888765533    34555555


Q ss_pred             CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~  461 (493)
                      . .|+++..++++ .|++++.|.++.+.|+++.....++.     .....+.+.|+| ++.|+++||.||.|+||++.++
T Consensus       342 g-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tg  419 (459)
T KOG0288|consen  342 G-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTG  419 (459)
T ss_pred             c-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCceeeeccCCCcEEEEEccCc
Confidence            4 89999999999 89999999999999999999888885     345589999999 9999999999999999999999


Q ss_pred             eEEE-e--cCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          462 QVVD-Y--TDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       462 ~~~~-~--~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ++.. .  ......|++++|+|.|.+|++++.++
T Consensus       420 KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~  453 (459)
T KOG0288|consen  420 KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK  453 (459)
T ss_pred             eEEEEeccCCCCcceEEEEEcCCCchhhcccCCc
Confidence            9874 2  22233699999999999999988765

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=9.1e-22  Score=199.33  Aligned_cols=234  Identities=18%  Similarity=0.270  Sum_probs=187.6

Q ss_pred             ecccccce-eccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126          235 IDRHGSAT-LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       235 ~~~~~~~~-fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl  313 (493)
                      .+.+..++ +.|+.++||++++.+.+|+|+..+...        +.+.||+..|.++....+|.+|+||+.|+++++|.+
T Consensus       323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c--------~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~  394 (775)
T KOG0319|consen  323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC--------QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRL  394 (775)
T ss_pred             chhheeeeecCCccceEEEEeCCCceEEEecCCCce--------EEEeCchhheeeeeecccCcEEEEecCCceEEEEEe
Confidence            34444444 478889999999999999998764432        267899999999996667889999999999999988


Q ss_pred             CCCe----eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce-----EEE
Q 011126          314 IEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL-----HEF  384 (493)
Q Consensus       314 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-----~~~  384 (493)
                      +.+.    ++.....+...+.++.++.               .....+...+.|..+.+|+...-.-...++     .+.
T Consensus       395 ~~~~~~~~~~a~~~gH~~svgava~~~---------------~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~  459 (775)
T KOG0319|consen  395 NNNCSKSLCVAQANGHTNSVGAVAGSK---------------LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE  459 (775)
T ss_pred             cCCcchhhhhhhhcccccccceeeecc---------------cCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence            4433    2333444555555554422               223445677888888888876522211111     134


Q ss_pred             ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      ..|...|++++++|+. +++|||.|++.+||++...+.+.++. |...|+||.|+| ..+.++|+|.|++|+||.+.+..
T Consensus       460 ~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fS  538 (775)
T KOG0319|consen  460 RAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFS  538 (775)
T ss_pred             HhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccce
Confidence            5799999999999999 99999999999999999999999997 999999999999 89999999999999999999999


Q ss_pred             EEE-ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          463 VVD-YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       463 ~~~-~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ++. +.+|...|..+.|-.+|+.|+++++|+
T Consensus       539 ClkT~eGH~~aVlra~F~~~~~qliS~~adG  569 (775)
T KOG0319|consen  539 CLKTFEGHTSAVLRASFIRNGKQLISAGADG  569 (775)
T ss_pred             eeeeecCccceeEeeeeeeCCcEEEeccCCC
Confidence            885 778999999999999999999999885

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=1.5e-21  Score=188.40  Aligned_cols=228  Identities=18%  Similarity=0.267  Sum_probs=184.0

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd  312 (493)
                      .|...+-++++++||+|||+|+.|..|.||+..+..       ..+.+.+|.+.|.+++|-.....|++++.|++|++|+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e-------hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~  272 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE-------HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS  272 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc-------hhhcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence            567777789999999999999999999999987443       4456899999999999998888999999999999999


Q ss_pred             cCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (493)
Q Consensus       313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (493)
                      +.....+.++..|+..+..+....-                ......+..|.++.+|..     .+.....+.+|.+.+-
T Consensus       273 ~~~~s~vetlyGHqd~v~~IdaL~r----------------eR~vtVGgrDrT~rlwKi-----~eesqlifrg~~~sid  331 (479)
T KOG0299|consen  273 IDQLSYVETLYGHQDGVLGIDALSR----------------ERCVTVGGRDRTVRLWKI-----PEESQLIFRGGEGSID  331 (479)
T ss_pred             hhHhHHHHHHhCCccceeeechhcc----------------cceEEeccccceeEEEec-----cccceeeeeCCCCCee
Confidence            9888777777666554433221110                111234556777777755     3444566889999999


Q ss_pred             EEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec--C-----------CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS--H-----------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       393 ~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~--h-----------~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      |++|-.+.++++|+.+|.|.||++...+++.+..  |           ..+|++++..| ..+++++|+.+|.||+|-+.
T Consensus       332 cv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  332 CVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             eEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEec
Confidence            9999988899999999999999999999888764  2           12899999999 99999999999999999998


Q ss_pred             CC----eEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126          460 RC----QVVDYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       460 ~~----~~~~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .+    .++.-....+-|++|+|+++|+.+++|.
T Consensus       411 ~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  411 DGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             CCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence            87    3444455788999999999999887764

>PTZ00420 coronin; Provisional

Probab=99.89  E-value=5.8e-21  Score=199.27  Aligned_cols=177  Identities=18%  Similarity=0.314  Sum_probs=144.1

Q ss_pred             eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCCCeee-eeeeccCCCCc
Q 011126          253 GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERL-DGFDVQDTDPS  330 (493)
Q Consensus       253 gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~~~-~~~~~~~~~~~  330 (493)
                      |+.++.|++|+.....       ....+.+|.+.|++++|+|+ +.+||+|+.||+|+|||+.++... ..+        
T Consensus        50 GG~~gvI~L~~~~r~~-------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i--------  114 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP-------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI--------  114 (568)
T ss_pred             CCceeEEEeeecCCCc-------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--------
Confidence            6678899999876432       23457899999999999996 789999999999999999754210 000        


Q ss_pred             eEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCC
Q 011126          331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSAD  408 (493)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~D  408 (493)
                                                                     ..++..+.+|...|.+++|+|++  +|++++.|
T Consensus       115 -----------------------------------------------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D  147 (568)
T PTZ00420        115 -----------------------------------------------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD  147 (568)
T ss_pred             -----------------------------------------------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence                                                           01244567899999999999988  56799999


Q ss_pred             CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEE-----EEEccCC
Q 011126          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA-----VCYCPDG  482 (493)
Q Consensus       409 g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~s-----v~~spdG  482 (493)
                      ++|+|||+++++.+..+.|...|.+++|+| ++.+|++++.|++|+|||+++++.+ .+..|.+.+..     ..|++++
T Consensus       148 gtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~  226 (568)
T PTZ00420        148 SFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD  226 (568)
T ss_pred             CeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence            999999999999888888888999999999 9999999999999999999999877 46777765433     3456899


Q ss_pred             CEEEEeecCC
Q 011126          483 KVRQNSACNF  492 (493)
Q Consensus       483 ~~l~s~s~d~  492 (493)
                      .+|++++.++
T Consensus       227 ~~IlTtG~d~  236 (568)
T PTZ00420        227 NYILSTGFSK  236 (568)
T ss_pred             CEEEEEEcCC
Confidence            9999988653

>PTZ00420 coronin; Provisional

Probab=99.88  E-value=5.7e-21  Score=199.30  Aligned_cols=201  Identities=14%  Similarity=0.237  Sum_probs=150.9

Q ss_pred             cCceeeeecccccceeccC-CCeEEeeecCCeEEEEECCCccccccc-cccceeeecccCCEEEEEEccCCCE-EEEEEC
Q 011126          228 LGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSS-LYTGQEFLAHEGSILTMKFSLDGQY-LASGGE  304 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~~-~~~~~~l~~H~~~I~~l~fspdg~~-Lasgs~  304 (493)
                      +..+.+|...+.+++|+|+ +.+||+|+.|++|+||++......... ......+.+|...|.+++|+|++.. |++++.
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~  146 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF  146 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence            3356678888999999997 789999999999999999754221111 1123357899999999999998875 579999


Q ss_pred             CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                      |++|+|||+.+++.+.                                                              .+
T Consensus       147 DgtIrIWDl~tg~~~~--------------------------------------------------------------~i  164 (568)
T PTZ00420        147 DSFVNIWDIENEKRAF--------------------------------------------------------------QI  164 (568)
T ss_pred             CCeEEEEECCCCcEEE--------------------------------------------------------------EE
Confidence            9999999997765321                                                              11


Q ss_pred             ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEE-----EEEccCCCCEEEEEeCCC----eE
Q 011126          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS-----VAFNPVDDNYFISGSIDG----KV  453 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~-----v~fsp~d~~~l~sgs~Dg----~V  453 (493)
                      . |...|.+++|+|+| +|++++.|++|+|||+++++.+..+. |.+.+.+     ..|++ ++.+|++++.|+    .|
T Consensus       165 ~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~V  242 (568)
T PTZ00420        165 N-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREM  242 (568)
T ss_pred             e-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEE
Confidence            1 34679999999999 89999999999999999999988875 7765433     34557 888999988775    79


Q ss_pred             EEEeCCC-CeEEEec---CCCCCeEEEEEccCCCEEEEeecCC
Q 011126          454 RIWEVRR-CQVVDYT---DIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       454 ~IWdl~~-~~~~~~~---~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +|||+++ .+++...   .....+...-..++|.++++|..|.
T Consensus       243 kLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~  285 (568)
T PTZ00420        243 KLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG  285 (568)
T ss_pred             EEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence            9999995 4544332   2333344444455688888887775

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.7e-21  Score=185.33  Aligned_cols=263  Identities=19%  Similarity=0.241  Sum_probs=201.0

Q ss_pred             ccCCcceeeeecCCCceeE-EccCCCchhhhhccccccCCCcccccccccCCCCCCccccccCCccccccccchhhhhhh
Q 011126          141 LKDHAACRIDDWGKGADLV-VSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRK  219 (493)
Q Consensus       141 ~~~~~~~~~~~ld~g~~~v-~~~~~~~~~~~~~~lr~v~~~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~  219 (493)
                      +.++..|.++||.+|+..+ ++.....++..   +..+. +.++.++.+.+-.-    .+|++.+.+..-          
T Consensus        14 S~d~~~~~~~dl~TGt~~~~ykg~~~a~~~s---l~~l~-~~yllsaq~~rp~l----~vw~i~k~~~~~----------   75 (476)
T KOG0646|consen   14 SFDPINCIVWDLRTGTSLLQYKGSYLAQAAS---LTALN-NEYLLSAQLKRPLL----HVWEILKKDQVV----------   75 (476)
T ss_pred             CCCCcceeEEecCCCceeEEecCcccccchh---hhhhc-hhheeeecccCccc----cccccCchhhhh----------
Confidence            3456679999999999988 66663333333   22222 35555555554422    266655432111          


Q ss_pred             hccccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE
Q 011126          220 VKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL  299 (493)
Q Consensus       220 ~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L  299 (493)
                                ...-....+.+++-+|.|.+|+.|+..|.+++|.+..+..       ...+.+|-..|+|++|+.||.+|
T Consensus        76 ----------q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L-------L~v~~aHYQ~ITcL~fs~dgs~i  138 (476)
T KOG0646|consen   76 ----------QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL-------LNVLSAHYQSITCLKFSDDGSHI  138 (476)
T ss_pred             ----------hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccH-------HHHHHhhccceeEEEEeCCCcEE
Confidence                      0011224566788999999999999999999999886652       22467899999999999999999


Q ss_pred             EEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeeccc
Q 011126          300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (493)
Q Consensus       300 asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (493)
                      +|||.||.|.+|.+..--                 ..+.                        +            ...+
T Consensus       139 iTgskDg~V~vW~l~~lv-----------------~a~~------------------------~------------~~~~  165 (476)
T KOG0646|consen  139 ITGSKDGAVLVWLLTDLV-----------------SADN------------------------D------------HSVK  165 (476)
T ss_pred             EecCCCccEEEEEEEeec-----------------cccc------------------------C------------CCcc
Confidence            999999999999873210                 0000                        0            0135


Q ss_pred             ceEEEecCCCCEeEEEEeCCC---eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEE
Q 011126          380 PLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (493)
Q Consensus       380 ~~~~~~~h~~~V~~l~~sp~g---~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IW  456 (493)
                      |++.+..|+-+|+++...+.|   +|+|++.|.++++||+..+..+.++.....+.+++.+| .++.+..|+.+|+|.+.
T Consensus       166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~  244 (476)
T KOG0646|consen  166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AERVVYIGTEEGKIFQN  244 (476)
T ss_pred             ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cccEEEecCCcceEEee
Confidence            788899999999999998876   99999999999999999999999999999999999999 89999999999999998


Q ss_pred             eCCCCe-----------------EEEecCCCC--CeEEEEEccCCCEEEEeecCC
Q 011126          457 EVRRCQ-----------------VVDYTDIRE--IVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       457 dl~~~~-----------------~~~~~~~~~--~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ++.+..                 ...+.+|.+  .|++++++-||..|++|+.|.
T Consensus       245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg  299 (476)
T KOG0646|consen  245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG  299 (476)
T ss_pred             ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC
Confidence            875322                 224677887  999999999999999998875

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.88  E-value=1.1e-21  Score=198.95  Aligned_cols=228  Identities=24%  Similarity=0.432  Sum_probs=176.6

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC-
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-  315 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~-  315 (493)
                      .+-+..|-|.++++++|...|.+.|+|+....       ...++++|.+.|+.|+.+||+..+++|+.|.+|++||..- 
T Consensus       414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~-------l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~  486 (888)
T KOG0306|consen  414 YILASKFVPGDRYIVLGTKNGELQVFDLASAS-------LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV  486 (888)
T ss_pred             cEEEEEecCCCceEEEeccCCceEEEEeehhh-------hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE
Confidence            34457888999999999999999999876332       3345789999999999999999999999999999999731 


Q ss_pred             ----Ceeeeeeecc-------CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          316 ----HERLDGFDVQ-------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       316 ----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                          +...+.+...       ...+.|+.++|++  .++++.              --+.++.++-...+    +....+
T Consensus       487 ~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg--k~LaVs--------------LLdnTVkVyflDtl----KFflsL  546 (888)
T KOG0306|consen  487 VSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG--KLLAVS--------------LLDNTVKVYFLDTL----KFFLSL  546 (888)
T ss_pred             eccCcccceeeeeccceEEeccccEEEEEEcCCC--cEEEEE--------------eccCeEEEEEecce----eeeeee
Confidence                1111111111       2233344444333  222221              12223333322222    335678


Q ss_pred             ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      .||.-+|.|+..+|+. +++||+.|+.|+||-+.=|.|.+.| .|.+.|.++.|.| ...+|.++|.|++|+-||-..-+
T Consensus       547 YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe  625 (888)
T KOG0306|consen  547 YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFE  625 (888)
T ss_pred             cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-cceeEEEecCcceEEeechhhhh
Confidence            9999999999999999 9999999999999999999998876 5999999999999 88999999999999999998877


Q ss_pred             EE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          463 VV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       463 ~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      .+ .+.+|...|++++..|+|.+++++++|+
T Consensus       626 ~iq~L~~H~~ev~cLav~~~G~~vvs~shD~  656 (888)
T KOG0306|consen  626 EIQKLDGHHSEVWCLAVSPNGSFVVSSSHDK  656 (888)
T ss_pred             hheeeccchheeeeeEEcCCCCeEEeccCCc
Confidence            66 6899999999999999999999999986

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.88  E-value=2.1e-21  Score=187.44  Aligned_cols=241  Identities=19%  Similarity=0.253  Sum_probs=185.7

Q ss_pred             eecccccceeccCCC-eEEeeecCCeEEEEECCCcccccc---ccccceeeecccCCEEEEEEccCCC-EEEEEECCCcE
Q 011126          234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELS---SLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTV  308 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V  308 (493)
                      |.+.++.+..-|... ++|+++..+.|.|||+.+......   ...+.-.+.+|+..-+.|.|++... +|++|+.|++|
T Consensus       123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i  202 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI  202 (422)
T ss_pred             CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence            445566677777665 566688899999999986543322   2334447899999889999999543 89999999999


Q ss_pred             EEEecCCCee-------eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126          309 RVWKVIEHER-------LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (493)
Q Consensus       309 ~iWdl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (493)
                      ++||+.....       ...+..+...+..+.|.+.+..               .+...+.++.+.+|+.+..  ..++.
T Consensus       203 ~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~---------------lF~sv~dd~~L~iwD~R~~--~~~~~  265 (422)
T KOG0264|consen  203 CLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED---------------LFGSVGDDGKLMIWDTRSN--TSKPS  265 (422)
T ss_pred             EEEeccccccCCccccceEEeecCCcceehhhccccchh---------------hheeecCCCeEEEEEcCCC--CCCCc
Confidence            9999965432       2334444444444444444332               2345567888999999884  67888


Q ss_pred             EEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCC-cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126          382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (493)
Q Consensus       382 ~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd  457 (493)
                      +...+|.+.|+|++|+|-+  +||||+.|++|+|||++.- .++.++. |.+.|.+|.|+|.....||+++.|+.+.|||
T Consensus       266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD  345 (422)
T KOG0264|consen  266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD  345 (422)
T ss_pred             ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence            8899999999999999977  9999999999999999863 4666665 9999999999998889999999999999999


Q ss_pred             CCCC--------------e-EEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          458 VRRC--------------Q-VVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       458 l~~~--------------~-~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +..-              + +....+|...|+.+.|+|+..+++++..+
T Consensus       346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae  394 (422)
T KOG0264|consen  346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE  394 (422)
T ss_pred             ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC
Confidence            9631              1 13467899999999999999988877654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.88  E-value=6.7e-22  Score=186.59  Aligned_cols=195  Identities=19%  Similarity=0.314  Sum_probs=160.1

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCcc------------------ccccccccceeeecccCCEEEEEEcc
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS------------------RELSSLYTGQEFLAHEGSILTMKFSL  294 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~------------------~~~~~~~~~~~l~~H~~~I~~l~fsp  294 (493)
                      +|...+.++...++|..+++|+.|.+|+||+.....                  ++.....+.-++.||+.+|.++.|++
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            788899999999999999999999999999932210                  01112223346899999999999988


Q ss_pred             CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126          295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (493)
Q Consensus       295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (493)
                       ...+++++.|.+|+.||+.++..+..+.                                                   
T Consensus       271 -~~v~yS~SwDHTIk~WDletg~~~~~~~---------------------------------------------------  298 (423)
T KOG0313|consen  271 -ATVIYSVSWDHTIKVWDLETGGLKSTLT---------------------------------------------------  298 (423)
T ss_pred             -CCceEeecccceEEEEEeecccceeeee---------------------------------------------------
Confidence             6689999999999999999887544332                                                   


Q ss_pred             eecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE---EEE-ecCCCcEEEEEEccCCCCEEEEEeC
Q 011126          375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC---LRV-FSHNNYVTSVAFNPVDDNYFISGSI  449 (493)
Q Consensus       375 ~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~---~~~-~~h~~~V~~v~fsp~d~~~l~sgs~  449 (493)
                                  -...++++.++|.. +|++|+.|..|+|||.+++.-   ... ..|.+.|.++.|+|.+...|++|+.
T Consensus       299 ------------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~  366 (423)
T KOG0313|consen  299 ------------TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY  366 (423)
T ss_pred             ------------cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEec
Confidence                        13567899999987 999999999999999987642   222 3599999999999988899999999


Q ss_pred             CCeEEEEeCCCCe--EEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          450 DGKVRIWEVRRCQ--VVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       450 Dg~V~IWdl~~~~--~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      |+++++||+++.+  +..+..|.+.|.++.|+. |.++++||.|+
T Consensus       367 D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~  410 (423)
T KOG0313|consen  367 DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADN  410 (423)
T ss_pred             CCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcc
Confidence            9999999999766  457899999999999975 55888998885

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.2e-21  Score=175.23  Aligned_cols=242  Identities=20%  Similarity=0.264  Sum_probs=183.9

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV  308 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V  308 (493)
                      .+.|.+.+..+.+.-.|+.||+++.|++|+|+.+++...    .....+|.||.++|+.+.|..  .|.+||++++||.|
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV   82 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV   82 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence            456778888888999999999999999999999987653    234557999999999999965  89999999999999


Q ss_pred             EEEecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126          309 RVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (493)
Q Consensus       309 ~iWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (493)
                      .||.-..++  .......+...+.++.+.++....++.+....              +.+-++..+.-.. .........
T Consensus        83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD--------------G~vsvl~~~~~g~-w~t~ki~~a  147 (299)
T KOG1332|consen   83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD--------------GKVSVLTYDSSGG-WTTSKIVFA  147 (299)
T ss_pred             EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC--------------CcEEEEEEcCCCC-ccchhhhhc
Confidence            999987774  33445566777888889888877666554433              3333322211100 011223467


Q ss_pred             CCCCEeEEEEeCC---C------------eEEEEeCCCeEEEEECCCCcEE--EEe-cCCCcEEEEEEccCCC---CEEE
Q 011126          387 HSSEVLDLSWSKN---G------------FLLSSSADKTVRLWQVGIDRCL--RVF-SHNNYVTSVAFNPVDD---NYFI  445 (493)
Q Consensus       387 h~~~V~~l~~sp~---g------------~l~sgs~Dg~V~lWd~~~~~~~--~~~-~h~~~V~~v~fsp~d~---~~l~  445 (493)
                      |.-.|++++|.|-   |            .|++|+.|..|+||+...++-+  +++ .|.+.|..++|.|..+   .+||
T Consensus       148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA  227 (299)
T KOG1332|consen  148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA  227 (299)
T ss_pred             cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence            9999999999885   1            4999999999999999876322  223 3999999999999432   4899


Q ss_pred             EEeCCCeEEEEeCCCC----eEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          446 SGSIDGKVRIWEVRRC----QVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       446 sgs~Dg~V~IWdl~~~----~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +++.||+|.||-.+..    +..-+......+..++|++.|.+|++++.|
T Consensus       228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd  277 (299)
T KOG1332|consen  228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD  277 (299)
T ss_pred             EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCC
Confidence            9999999999987732    112245577889999999999999988765

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6.4e-22  Score=197.82  Aligned_cols=233  Identities=19%  Similarity=0.275  Sum_probs=193.4

Q ss_pred             ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC--eeeee
Q 011126          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH--ERLDG  321 (493)
Q Consensus       244 sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~--~~~~~  321 (493)
                      .|.+++|.+|++||.|++|+......+.+.. ....++.|.+.|+.|....+|+.|++++.|-+|++|+...+  -++..
T Consensus        34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st  112 (735)
T KOG0308|consen   34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST  112 (735)
T ss_pred             CCCCceEEecCCCceEEEeccccccCCcccc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh
Confidence            3567789999999999999988666544433 23468899999999999999999999999999999999877  56777


Q ss_pred             eeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee------cccceEEEe-cCCCCEeEE
Q 011126          322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL------LEKPLHEFQ-GHSSEVLDL  394 (493)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~------~~~~~~~~~-~h~~~V~~l  394 (493)
                      +..|..-+.|++.....               ......++-+..+++|+......      ...+...+. |+...|+++
T Consensus       113 ir~H~DYVkcla~~ak~---------------~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL  177 (735)
T KOG0308|consen  113 IRTHKDYVKCLAYIAKN---------------NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL  177 (735)
T ss_pred             hhcccchheeeeecccC---------------ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence            88888878887764222               22345677788888888874411      122334444 899999999


Q ss_pred             EEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCC
Q 011126          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIRE  471 (493)
Q Consensus       395 ~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~  471 (493)
                      +.++.| .+++|+..+.|++||.++++.+..+ +|.+.|.++..++ ||+.+++++.||+|++||+...+.+ .+..|..
T Consensus       178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e  256 (735)
T KOG0308|consen  178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE  256 (735)
T ss_pred             ecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence            999999 9999999999999999988776666 4999999999999 9999999999999999999988877 5888999


Q ss_pred             CeEEEEEccCCCEEEEeecCCC
Q 011126          472 IVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       472 ~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      .|+++..+|+=+.+++|+.|++
T Consensus       257 ~VWaL~~~~sf~~vYsG~rd~~  278 (735)
T KOG0308|consen  257 GVWALQSSPSFTHVYSGGRDGN  278 (735)
T ss_pred             ceEEEeeCCCcceEEecCCCCc
Confidence            9999999999999999998875

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.88  E-value=8.9e-22  Score=207.59  Aligned_cols=208  Identities=25%  Similarity=0.405  Sum_probs=160.8

Q ss_pred             cccceeccCCCeEEeee--cCCeEEEEECCCccccccc-----cccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          238 HGSATLKPGDHELTLGQ--RMRRVRVHPVKKQSRELSS-----LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs--~dg~V~vwd~~~~~~~~~~-----~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      +-++.++|+|..+|+|+  .|+.++||+...-..+...     ....-+...|.+.|+|+.|+|||++||+|+.|+.|.|
T Consensus        16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i   95 (942)
T KOG0973|consen   16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI   95 (942)
T ss_pred             EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence            56799999999999999  8999999987643221110     1112245679999999999999999999999999999


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      |..... ...          .+....++                        ...+     .    ..+.+..+.+|.+.
T Consensus        96 W~~~~~-~~~----------~~fgs~g~------------------------~~~v-----E----~wk~~~~l~~H~~D  131 (942)
T KOG0973|consen   96 WERAEI-GSG----------TVFGSTGG------------------------AKNV-----E----SWKVVSILRGHDSD  131 (942)
T ss_pred             eeeccc-CCc----------cccccccc------------------------cccc-----c----eeeEEEEEecCCCc
Confidence            987531 000          00000000                        0000     0    01346778999999


Q ss_pred             EeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec
Q 011126          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT  467 (493)
Q Consensus       391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~  467 (493)
                      |.+++|+|++ +|++++.|++|.||+.++..+++++. |...|..+.|.| -|+|||+-+.|++|+||++.+..+.+ ..
T Consensus       132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It  210 (942)
T KOG0973|consen  132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSIT  210 (942)
T ss_pred             cceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeec
Confidence            9999999999 99999999999999999999999987 999999999999 99999999999999999988765553 21


Q ss_pred             ------CCCCCeEEEEEccCCCEEEEeec
Q 011126          468 ------DIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       468 ------~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                            .....+..+.|+|||++|++..+
T Consensus       211 ~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  211 KPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             cchhhCCCcceeeecccCCCcCeecchhh
Confidence                  22345889999999999998653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=5.5e-21  Score=192.22  Aligned_cols=230  Identities=16%  Similarity=0.295  Sum_probs=190.4

Q ss_pred             ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeec-ccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl  313 (493)
                      .+.+.++.|+++|.+||+|..+|.|.|||......       ...+.+ |...|-+++|+  +..+.+|+.|+.|.++|+
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-------~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv  287 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-------TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV  287 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-------cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence            46677899999999999999999999999875443       224556 99999999998  678999999999999999


Q ss_pred             CCCeeeee-eeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126          314 IEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (493)
Q Consensus       314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (493)
                      ...+.... +..|...+..+.|+.++                .....++.|..+.+|+.    ....+...+..|.++|.
T Consensus       288 R~~~~~~~~~~~H~qeVCgLkws~d~----------------~~lASGgnDN~~~Iwd~----~~~~p~~~~~~H~aAVK  347 (484)
T KOG0305|consen  288 RISQHVVSTLQGHRQEVCGLKWSPDG----------------NQLASGGNDNVVFIWDG----LSPEPKFTFTEHTAAVK  347 (484)
T ss_pred             ecchhhhhhhhcccceeeeeEECCCC----------------CeeccCCCccceEeccC----CCccccEEEeccceeee
Confidence            88776555 55666666666665544                34467888899999988    33467888999999999


Q ss_pred             EEEEeCCC--eEEEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeCCCCeEE-Ee
Q 011126          393 DLSWSKNG--FLLSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVV-DY  466 (493)
Q Consensus       393 ~l~~sp~g--~l~sgs--~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~~~~~~-~~  466 (493)
                      .++|+|-.  +||+|+  .|++|++||..++..+..+.....|.+|.|+|....++.+.+ .++.|.||+..+.+.+ .+
T Consensus       348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l  427 (484)
T KOG0305|consen  348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL  427 (484)
T ss_pred             EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee
Confidence            99999965  888874  799999999999999999999999999999993334444433 4678999999987766 58


Q ss_pred             cCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          467 TDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       467 ~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      .+|...|..++++|||..+++|+.|-+
T Consensus       428 ~gH~~RVl~la~SPdg~~i~t~a~DET  454 (484)
T KOG0305|consen  428 LGHTSRVLYLALSPDGETIVTGAADET  454 (484)
T ss_pred             cCCcceeEEEEECCCCCEEEEecccCc
Confidence            999999999999999999999998853

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.88  E-value=1.2e-21  Score=187.67  Aligned_cols=225  Identities=16%  Similarity=0.253  Sum_probs=171.6

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  320 (493)
                      +...|....+++|+.|..+.++|....+       ....+.||+..|+.+.|+|+...+++++.|..|+||.........
T Consensus       225 ld~~~s~~~ilTGG~d~~av~~d~~s~q-------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~  297 (506)
T KOG0289|consen  225 LDIIPSSSKILTGGEDKTAVLFDKPSNQ-------ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT  297 (506)
T ss_pred             EeecCCCCcceecCCCCceEEEecchhh-------hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc
Confidence            4455556899999999999999987544       234689999999999999999999999999999999998777666


Q ss_pred             eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC
Q 011126          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG  400 (493)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  400 (493)
                      ....+..++..+...+.+...                +..+.++.....+........  +..-....-.+++++|+|+|
T Consensus       298 ~~~~h~~~V~~ls~h~tgeYl----------------lsAs~d~~w~Fsd~~~g~~lt--~vs~~~s~v~~ts~~fHpDg  359 (506)
T KOG0289|consen  298 SSRPHEEPVTGLSLHPTGEYL----------------LSASNDGTWAFSDISSGSQLT--VVSDETSDVEYTSAAFHPDG  359 (506)
T ss_pred             ccccccccceeeeeccCCcEE----------------EEecCCceEEEEEccCCcEEE--EEeeccccceeEEeeEcCCc
Confidence            666666666665555444322                222333333222222211100  11111223468999999999


Q ss_pred             -eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCCCCeEEE
Q 011126          401 -FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAV  476 (493)
Q Consensus       401 -~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~~~~I~sv  476 (493)
                       +|.+|..|+.|+|||+..+..+..|. |.++|..|+|+. +|.||++++.|+.|++||++.-+.+..  ......+.++
T Consensus       360 Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~  438 (506)
T KOG0289|consen  360 LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSL  438 (506)
T ss_pred             eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeE
Confidence             99999999999999999999988887 999999999999 999999999999999999998765532  2333479999


Q ss_pred             EEccCCCEEEEeecC
Q 011126          477 CYCPDGKVRQNSACN  491 (493)
Q Consensus       477 ~~spdG~~l~s~s~d  491 (493)
                      +|.+.|++|++++.+
T Consensus       439 ~fD~SGt~L~~~g~~  453 (506)
T KOG0289|consen  439 SFDQSGTYLGIAGSD  453 (506)
T ss_pred             EEcCCCCeEEeecce
Confidence            999999999999765

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.88  E-value=7.6e-21  Score=178.75  Aligned_cols=206  Identities=20%  Similarity=0.293  Sum_probs=149.4

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  320 (493)
                      +.|||-+..|++|+.||.|.+|.+.+.       ...+.+.||+.++++-.|.|+|+.++++..||+|++|+..+++++.
T Consensus       154 l~WHp~a~illAG~~DGsvWmw~ip~~-------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~  226 (399)
T KOG0296|consen  154 LKWHPRAHILLAGSTDGSVWMWQIPSQ-------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH  226 (399)
T ss_pred             EEecccccEEEeecCCCcEEEEECCCc-------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence            445666666666666666666655532       1234688999999999999999999999999999999999999888


Q ss_pred             eeeccCC-CCceE--------EEeeCCCCceeeeeccCccc-----------------------------cceeeeecCC
Q 011126          321 GFDVQDT-DPSCL--------YFTINHLSQLIPIDVDKEKI-----------------------------DKTKSLRKSS  362 (493)
Q Consensus       321 ~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~s~  362 (493)
                      .+..... ...++        .+..+....+..++...+++                             .......++.
T Consensus       227 ~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v  306 (399)
T KOG0296|consen  227 KITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV  306 (399)
T ss_pred             EecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc
Confidence            7762221 11111        11111111111111111111                             0112245677


Q ss_pred             CceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCC
Q 011126          363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD  441 (493)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~  441 (493)
                      ++.+.+|+...+.     ++..-.|...|+.+.|-++.+|++++.+|.|+.||.++++++.++. |...|.+++++| +.
T Consensus       307 dG~i~iyD~a~~~-----~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~  380 (399)
T KOG0296|consen  307 DGTIAIYDLAAST-----LRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QK  380 (399)
T ss_pred             cceEEEEecccch-----hheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CC
Confidence            8888888776554     3445568899999999995599999999999999999999999996 999999999999 99


Q ss_pred             CEEEEEeCCCeEEEEeCC
Q 011126          442 NYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       442 ~~l~sgs~Dg~V~IWdl~  459 (493)
                      ++++|+|.|++.+|++..
T Consensus       381 ~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  381 RLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             cEEEEecCCCeEEEEecC
Confidence            999999999999999874

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.88  E-value=1.4e-22  Score=188.98  Aligned_cols=244  Identities=20%  Similarity=0.355  Sum_probs=181.4

Q ss_pred             cccchhhhhhhhccccccccC----ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeeccc
Q 011126          209 ESRDLVDAKRKVKRGWLKKLG----AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE  284 (493)
Q Consensus       209 ~~~~~~~~~~~~k~~w~~~~~----~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~  284 (493)
                      +..-..|.+....+.|.+...    .+.+|.+.+-  ++.-+.+.+++|+.|.+|+|||++++.       +.+++.+|.
T Consensus       207 D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVL--CLqyd~rviisGSSDsTvrvWDv~tge-------~l~tlihHc  277 (499)
T KOG0281|consen  207 DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVL--CLQYDERVIVSGSSDSTVRVWDVNTGE-------PLNTLIHHC  277 (499)
T ss_pred             chhhhcccccCceEEeccccHHHHHhhhcCCCcEE--eeeccceEEEecCCCceEEEEeccCCc-------hhhHHhhhc
Confidence            333445667777788876543    3556665554  445566799999999999999998654       344678899


Q ss_pred             CCEEEEEEccCCCEEEEEECCCcEEEEecCCCeee---eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecC
Q 011126          285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS  361 (493)
Q Consensus       285 ~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  361 (493)
                      ..|..+.|+  ..++++++.|.+|.+||+.....+   ..+..+...+.             .++++.     ......+
T Consensus       278 eaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN-------------vVdfd~-----kyIVsAS  337 (499)
T KOG0281|consen  278 EAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN-------------VVDFDD-----KYIVSAS  337 (499)
T ss_pred             ceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee-------------eecccc-----ceEEEec
Confidence            999999997  449999999999999999765422   11222222221             222222     2456788


Q ss_pred             CCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCC
Q 011126          362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVD  440 (493)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d  440 (493)
                      ++.++.+|+.....    .+.++.+|...|-|+.+... ++++|+.|.+|++||+.+|.|++.+. |..-|.||.|   +
T Consensus       338 gDRTikvW~~st~e----fvRtl~gHkRGIAClQYr~r-lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d  409 (499)
T KOG0281|consen  338 GDRTIKVWSTSTCE----FVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---D  409 (499)
T ss_pred             CCceEEEEecccee----eehhhhcccccceehhccCe-EEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---c
Confidence            89999999887654    37889999999999987422 89999999999999999999999997 9999999999   5


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeE----------EEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          441 DNYFISGSIDGKVRIWEVRRCQV----------VDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       441 ~~~l~sgs~Dg~V~IWdl~~~~~----------~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ...+++|+.||+|+|||+..+.-          .....|.+.|..+.|.  ...+++++.|
T Consensus       410 ~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHd  468 (499)
T KOG0281|consen  410 NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHD  468 (499)
T ss_pred             CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCC
Confidence            58899999999999999986531          1356778888888774  3455555544

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.3e-21  Score=175.74  Aligned_cols=231  Identities=19%  Similarity=0.254  Sum_probs=182.5

Q ss_pred             cccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEec
Q 011126          236 DRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       236 ~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl  313 (493)
                      |..-.++|+++. +.+++++.||+++|||......      +.+.++.|...|.++.|++ ++..+++++.|++|++|+.
T Consensus        61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~  134 (311)
T KOG0277|consen   61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP  134 (311)
T ss_pred             cceeEeeecCCCcceEEEEecCceEEEeccCCCCc------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecC
Confidence            444458888865 5788899999999999765444      3345788999999999999 5667888899999999999


Q ss_pred             CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (493)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (493)
                      ..++.+.++..+..-+....+++...+.               ....+.++.+.+|+.+..   .+++. +..|...|++
T Consensus       135 ~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nl---------------fas~Sgd~~l~lwdvr~~---gk~~~-i~ah~~Eil~  195 (311)
T KOG0277|consen  135 NRPNSVQTFNGHNSCIYQAAFSPHIPNL---------------FASASGDGTLRLWDVRSP---GKFMS-IEAHNSEILC  195 (311)
T ss_pred             CCCcceEeecCCccEEEEEecCCCCCCe---------------EEEccCCceEEEEEecCC---CceeE-EEeccceeEe
Confidence            9999899888876666666666555443               345678888999985543   44444 8899999999


Q ss_pred             EEEeCCC--eEEEEeCCCeEEEEECCCCc-EEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE--Eec
Q 011126          394 LSWSKNG--FLLSSSADKTVRLWQVGIDR-CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYT  467 (493)
Q Consensus       394 l~~sp~g--~l~sgs~Dg~V~lWd~~~~~-~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~--~~~  467 (493)
                      +.|+.-+  +|+||+.|+.||+||++.-+ ++..+ .|.-.|..|.|+|....+|++++.|=++||||.....-.  ...
T Consensus       196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~  275 (311)
T KOG0277|consen  196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD  275 (311)
T ss_pred             ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh
Confidence            9999866  99999999999999998643 44444 499999999999988889999999999999999855432  466


Q ss_pred             CCCCCeEEEEEccC-CCEEEEeecC
Q 011126          468 DIREIVSAVCYCPD-GKVRQNSACN  491 (493)
Q Consensus       468 ~~~~~I~sv~~spd-G~~l~s~s~d  491 (493)
                      .|.+-+..+.|++- +.+++..+-|
T Consensus       276 ~HtEFv~g~Dws~~~~~~vAs~gWD  300 (311)
T KOG0277|consen  276 HHTEFVCGLDWSLFDPGQVASTGWD  300 (311)
T ss_pred             ccceEEeccccccccCceeeecccc
Confidence            78888999999885 4456555544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4.5e-20  Score=163.17  Aligned_cols=242  Identities=18%  Similarity=0.253  Sum_probs=191.1

Q ss_pred             eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc----CCCEEEEEE-CCC
Q 011126          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL----DGQYLASGG-EDG  306 (493)
Q Consensus       232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp----dg~~Lasgs-~Dg  306 (493)
                      ..|...+.|.+|+|.|.+||+|+.|.+|++............  ..-+|.-|.+.|..++|-.    .|.+|++++ .|.
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g--~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc  163 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATG--HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC  163 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccC--cceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence            446677888999999999999999999999987755543322  2235778999999999965    356788876 478


Q ss_pred             cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (493)
                      .|++-|..+++....+..+...+..++.            +     ....+..++.+.++..|+.++.......-..+.+
T Consensus       164 ~iy~tdc~~g~~~~a~sghtghilalys------------w-----n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~  226 (350)
T KOG0641|consen  164 KIYITDCGRGQGFHALSGHTGHILALYS------------W-----NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD  226 (350)
T ss_pred             eEEEeecCCCCcceeecCCcccEEEEEE------------e-----cCcEEEccCCCceEEEEeeeccceeeeccCcccC
Confidence            8888899998887777776654433321            1     1234567888999999988765432222222222


Q ss_pred             ---CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126          387 ---HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       387 ---h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~  461 (493)
                         ....|..++..|.| +|++|-.|....+||++.++.++.|. |...|.|+.|+| ...|+++|+.|.+|++-|+...
T Consensus       227 ~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  227 GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccc
Confidence               24689999999999 99999999999999999999999986 999999999999 8999999999999999999753


Q ss_pred             -----eEEEecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          462 -----QVVDYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       462 -----~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                           .++....|++.+..+.|+|..-.+++++.|++
T Consensus       306 la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt  342 (350)
T KOG0641|consen  306 LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT  342 (350)
T ss_pred             hhhcCceEEEEeccCceEEEEecCccceeeeccCcce
Confidence                 23456789999999999999999999888874

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.87  E-value=6.7e-21  Score=175.04  Aligned_cols=192  Identities=24%  Similarity=0.410  Sum_probs=161.1

Q ss_pred             eeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC-CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceee
Q 011126          279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (493)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (493)
                      .+.+|++.|+.++|+|+|.+|||||.|..|.+|++. ..+....++.+...+..+.+..+.                ...
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~----------------s~i  105 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG----------------SHI  105 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC----------------CEE
Confidence            468999999999999999999999999999999964 344455556655555555444433                233


Q ss_pred             eecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEE
Q 011126          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVA  435 (493)
Q Consensus       358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~  435 (493)
                      +..+.|..+..|+....    +.+..+++|..-|+.+.-+.-|  ++.+++.|++++|||+++..+++++...-.++++.
T Consensus       106 ~S~gtDk~v~~wD~~tG----~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~  181 (338)
T KOG0265|consen  106 LSCGTDKTVRGWDAETG----KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVG  181 (338)
T ss_pred             EEecCCceEEEEecccc----eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEE
Confidence            56677888999988764    4577889999999999865556  88899999999999999999999999889999999


Q ss_pred             EccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          436 FNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       436 fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      |.. .+.-+.+|+.|+.|++||++..... .+.+|.++|+.+..+|+|.++++-+-|
T Consensus       182 f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd  237 (338)
T KOG0265|consen  182 FKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD  237 (338)
T ss_pred             ecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccccc
Confidence            998 8999999999999999999988877 589999999999999999999876654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.87  E-value=3.3e-21  Score=188.03  Aligned_cols=264  Identities=17%  Similarity=0.219  Sum_probs=186.1

Q ss_pred             ccccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE
Q 011126          221 KRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA  300 (493)
Q Consensus       221 k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La  300 (493)
                      +..-..+-..+.++...|.++++.|.|-.|++|+.|.+|++||+......+..+...+....|  .|++++|++.|..|+
T Consensus       153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h--~i~sl~ys~Tg~~iL  230 (641)
T KOG0772|consen  153 KLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH--QINSLQYSVTGDQIL  230 (641)
T ss_pred             hcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccc--ccceeeecCCCCeEE
Confidence            333344445577788888899999999999999999999999999877666554444333444  699999999999888


Q ss_pred             EEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (493)
Q Consensus       301 sgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (493)
                      +.+.....+|+|-.........+ ...-+..++-+..+...+.+..+..  ..+..+++.+.++.+.+|+........+.
T Consensus       231 vvsg~aqakl~DRdG~~~~e~~K-GDQYI~Dm~nTKGHia~lt~g~whP--~~k~~FlT~s~DgtlRiWdv~~~k~q~qV  307 (641)
T KOG0772|consen  231 VVSGSAQAKLLDRDGFEIVEFSK-GDQYIRDMYNTKGHIAELTCGCWHP--DNKEEFLTCSYDGTLRIWDVNNTKSQLQV  307 (641)
T ss_pred             EEecCcceeEEccCCceeeeeec-cchhhhhhhccCCceeeeecccccc--CcccceEEecCCCcEEEEecCCchhheeE
Confidence            88888899999964443332222 2222222222222322222222222  22344567788999999988765533222


Q ss_pred             eEEE--ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEE--EEe--cCCC--cEEEEEEccCCCCEEEEEeCCC
Q 011126          381 LHEF--QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--RVF--SHNN--YVTSVAFNPVDDNYFISGSIDG  451 (493)
Q Consensus       381 ~~~~--~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~--~~~--~h~~--~V~~v~fsp~d~~~l~sgs~Dg  451 (493)
                      +...  .+..-.++..+|+|+| +||+|+.||.|.+|+......-  ..+  .|..  .|+||.|++ +|++|++=+.|+
T Consensus       308 ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~  386 (641)
T KOG0772|consen  308 IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDD  386 (641)
T ss_pred             EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCC
Confidence            2221  2344578899999999 9999999999999998654322  222  2766  999999999 999999999999


Q ss_pred             eEEEEeCCCCe-EE-EecCC--CCCeEEEEEccCCCEEEEeec
Q 011126          452 KVRIWEVRRCQ-VV-DYTDI--REIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       452 ~V~IWdl~~~~-~~-~~~~~--~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ++++||++..+ .+ .+.+.  ..+-+.+||+|+.++|++|.+
T Consensus       387 tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  387 TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence            99999999753 33 23333  346788999999999999875

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.87  E-value=2.3e-21  Score=173.74  Aligned_cols=190  Identities=19%  Similarity=0.324  Sum_probs=168.1

Q ss_pred             eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl  313 (493)
                      |...+..++|+.|.++|++|+.+..++||+++....+..      ++.+|.+.|..+-|....+.|++..+|++||+||.
T Consensus        99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~------E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~  172 (334)
T KOG0278|consen   99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK------EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH  172 (334)
T ss_pred             hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch------hhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence            445666799999999999999999999999986654433      67899999999999998889999999999999999


Q ss_pred             CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (493)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (493)
                      .++..++.+..                                                               ..+|++
T Consensus       173 rTgt~v~sL~~---------------------------------------------------------------~s~VtS  189 (334)
T KOG0278|consen  173 RTGTEVQSLEF---------------------------------------------------------------NSPVTS  189 (334)
T ss_pred             ccCcEEEEEec---------------------------------------------------------------CCCCcc
Confidence            99987665532                                                               456889


Q ss_pred             EEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCC
Q 011126          394 LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIRE  471 (493)
Q Consensus       394 l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~--~~~~~~  471 (493)
                      +.++++|.+++-...+.|++||..+...++.+.....|.+..++| +..++++|+.|..++.||..++.-+.  ..+|.+
T Consensus       190 lEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g  268 (334)
T KOG0278|consen  190 LEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG  268 (334)
T ss_pred             eeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCC
Confidence            999999977777788999999999999999999889999999999 78999999999999999999997664  389999


Q ss_pred             CeEEEEEccCCCEEEEeecCCC
Q 011126          472 IVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       472 ~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      +|.++.|+|||...++|+-|++
T Consensus       269 pVhcVrFSPdGE~yAsGSEDGT  290 (334)
T KOG0278|consen  269 PVHCVRFSPDGELYASGSEDGT  290 (334)
T ss_pred             ceEEEEECCCCceeeccCCCce
Confidence            9999999999999999998864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.87  E-value=1e-20  Score=199.66  Aligned_cols=251  Identities=20%  Similarity=0.233  Sum_probs=195.3

Q ss_pred             cccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCC-----------ccccccccccceeeecccCCEEEEEEcc
Q 011126          226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----------QSRELSSLYTGQEFLAHEGSILTMKFSL  294 (493)
Q Consensus       226 ~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~-----------~~~~~~~~~~~~~l~~H~~~I~~l~fsp  294 (493)
                      +.+..+..|...+.|+.|+|||.+||+|+.|+.|.||....           +......+.....+.+|.+.|..++|+|
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP  139 (942)
T ss_pred             hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence            34556777888899999999999999999999999999873           1122233445567899999999999999


Q ss_pred             CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126          295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (493)
Q Consensus       295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (493)
                      ++.+|++++.|++|.||+..+.+.+..+..|...+..+.|-+.+                ..+...+.|..+.+|....|
T Consensus       140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G----------------ky~ASqsdDrtikvwrt~dw  203 (942)
T KOG0973|consen  140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG----------------KYFASQSDDRTLKVWRTSDW  203 (942)
T ss_pred             CccEEEEecccceEEEEccccceeeeeeecccccccceEECCcc----------------CeeeeecCCceEEEEEcccc
Confidence            99999999999999999999999999999998888887776544                23456778888999987666


Q ss_pred             eecccceEEEe--cCCCCEeEEEEeCCC-eEEEEe----CCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccC----C--
Q 011126          375 RLLEKPLHEFQ--GHSSEVLDLSWSKNG-FLLSSS----ADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV----D--  440 (493)
Q Consensus       375 ~~~~~~~~~~~--~h~~~V~~l~~sp~g-~l~sgs----~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~----d--  440 (493)
                      .+.......+.  .-...+.-+.|+|+| +|++..    .-.++.|.+-.+.+.-..+ +|..++.++.|+|.    .  
T Consensus       204 ~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~  283 (942)
T KOG0973|consen  204 GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK  283 (942)
T ss_pred             eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc
Confidence            55321111111  123467889999999 888763    3356888887776644444 69999999999983    1  


Q ss_pred             ------CC----EEEEEeCCCeEEEEeCCCCeEEE--ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          441 ------DN----YFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       441 ------~~----~l~sgs~Dg~V~IWdl~~~~~~~--~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                            ++    .+|+|+.|++|-||.....+++.  ..-....|..++|+|||..|.+.+-|+
T Consensus       284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG  347 (942)
T KOG0973|consen  284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG  347 (942)
T ss_pred             cCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC
Confidence                  22    68899999999999998777663  334567899999999999999888775

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1.8e-20  Score=166.69  Aligned_cols=189  Identities=20%  Similarity=0.401  Sum_probs=160.9

Q ss_pred             eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceee
Q 011126          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (493)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (493)
                      ..+..|+++|..++|+-+|+|.++|+.|.+|++|+...+.+++++..+...+..+....+.                ..+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn----------------skf   74 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN----------------SKF   74 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc----------------ccc
Confidence            3567899999999999999999999999999999999999999999887766555443332                344


Q ss_pred             eecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC--CcEEEEec-CCCcEEE
Q 011126          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI--DRCLRVFS-HNNYVTS  433 (493)
Q Consensus       358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~--~~~~~~~~-h~~~V~~  433 (493)
                      .....+..+.+|+....+    .++.+.+|.+.|+.++|+... .+++|+.|.+|++||.++  .++++++. ..+.|.+
T Consensus        75 ~s~GgDk~v~vwDV~TGk----v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S  150 (307)
T KOG0316|consen   75 ASCGGDKAVQVWDVNTGK----VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS  150 (307)
T ss_pred             ccCCCCceEEEEEcccCe----eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeE
Confidence            567788899999987654    478899999999999999988 999999999999999975  45677776 7789999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      |..+   +..|++|+.||++|.||++.|++.. +.  ..+|++++|++||+..++++-|
T Consensus       151 i~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~  204 (307)
T KOG0316|consen  151 IDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLD  204 (307)
T ss_pred             EEec---ccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeecc
Confidence            9985   4679999999999999999998773 44  4579999999999999888755

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=7.2e-22  Score=199.52  Aligned_cols=233  Identities=21%  Similarity=0.353  Sum_probs=199.1

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      ...+|...++++..-..++.+++|+.|..+-+|.+.+.....       .|.+|.++|.+|.|++...+|++|+.+|+|+
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-------S~~~hespIeSl~f~~~E~LlaagsasgtiK   95 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-------SLTGHESPIESLTFDTSERLLAAGSASGTIK   95 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-------eeeccCCcceeeecCcchhhhcccccCCcee
Confidence            455666677777777788999999999999999988665443       3789999999999999999999999999999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      +||+.+++.+.++..+...+..+.|.+..                .....++.+....+|+.+..    .+.+.+.+|..
T Consensus        96 ~wDleeAk~vrtLtgh~~~~~sv~f~P~~----------------~~~a~gStdtd~~iwD~Rk~----Gc~~~~~s~~~  155 (825)
T KOG0267|consen   96 VWDLEEAKIVRTLTGHLLNITSVDFHPYG----------------EFFASGSTDTDLKIWDIRKK----GCSHTYKSHTR  155 (825)
T ss_pred             eeehhhhhhhhhhhccccCcceeeeccce----------------EEeccccccccceehhhhcc----CceeeecCCcc
Confidence            99999999888888887777777654433                22245677777777777642    45788899999


Q ss_pred             CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-e
Q 011126          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y  466 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~  466 (493)
                      .|..+.|+|+| +++.++.|.+++|||+..++.+..|. |...+..+.|+| ..-++++|+.|++|++||+++.+++. .
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~  234 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSG  234 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeecc
Confidence            99999999999 99999999999999999999999998 999999999999 88999999999999999999999884 4


Q ss_pred             cCCCCCeEEEEEccCCCEEEEeec
Q 011126          467 TDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       467 ~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ......|.++.|+|+|+.+++|-.
T Consensus       235 ~~~~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  235 KPETDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             CCccCCceeeeecCCceeeecCch
Confidence            555778999999999999988753

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=3.5e-21  Score=180.76  Aligned_cols=234  Identities=16%  Similarity=0.245  Sum_probs=184.6

Q ss_pred             cccCceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126          226 KKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (493)
Q Consensus       226 ~~~~~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (493)
                      +-.+.+.+|.+.+.+++=+|.. ..+|+|+.||.|+|||+....       +...+++|.+.|..|++..  ..++++|.
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-------~~~~f~AH~G~V~Gi~v~~--~~~~tvgd  127 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-------CIRTFKAHEGLVRGICVTQ--TSFFTVGD  127 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh-------hhheeecccCceeeEEecc--cceEEecC
Confidence            3456789999999999999998 789999999999999987433       4456899999999999986  67889999


Q ss_pred             CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                      |.+|+.|.+... .+.++...              ..+..++.     ........+....+-+|+...    ..|+..+
T Consensus       128 DKtvK~wk~~~~-p~~tilg~--------------s~~~gIdh-----~~~~~~FaTcGe~i~IWD~~R----~~Pv~sm  183 (433)
T KOG0268|consen  128 DKTVKQWKIDGP-PLHTILGK--------------SVYLGIDH-----HRKNSVFATCGEQIDIWDEQR----DNPVSSM  183 (433)
T ss_pred             CcceeeeeccCC-cceeeecc--------------cccccccc-----ccccccccccCceeeeccccc----CCcccee
Confidence            999999987542 22222111              00111100     011112233444566676543    4678888


Q ss_pred             ecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      .-....|.++.|+|..  +|++|+.|+.|.|||++.+.+++..-....-+.|+|+| ..-.|++|+.|..++.+|++.-+
T Consensus       184 swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~  262 (433)
T KOG0268|consen  184 SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS  262 (433)
T ss_pred             ecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhhc
Confidence            8888899999999986  89999999999999999999999888777788999999 99999999999999999999653


Q ss_pred             -EE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          463 -VV-DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       463 -~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                       .+ ...+|...|.++.|+|.|+-+++|+-|++
T Consensus       263 ~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks  295 (433)
T KOG0268|consen  263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS  295 (433)
T ss_pred             ccchhhcccceeEEEeccCCCcchhccccccce
Confidence             33 57899999999999999999999998864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=4.1e-21  Score=195.50  Aligned_cols=230  Identities=18%  Similarity=0.236  Sum_probs=181.3

Q ss_pred             ceec-cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCee
Q 011126          241 ATLK-PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       241 ~~fs-p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~  318 (493)
                      +.|+ -+.++||+++..|.|.+||+.+.....    ..+.|..|+..|+++.|++ ...+|++|+.||+|++||++..+.
T Consensus        93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk----~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNK----LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             cccccchhhhheeecCCCcEEEEecCccccch----hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            4444 345789999999999999998732211    1224678999999999998 456899999999999999999888


Q ss_pred             eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC
Q 011126          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (493)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  398 (493)
                      ..++......+..+.|++....               .+......+.+..|+.+..+.   +...+..|.++|.|+.|+|
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~---------------~F~s~~dsG~lqlWDlRqp~r---~~~k~~AH~GpV~c~nwhP  230 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGN---------------KFASIHDSGYLQLWDLRQPDR---CEKKLTAHNGPVLCLNWHP  230 (839)
T ss_pred             cccccccchhhhceeeccCCCc---------------eEEEecCCceEEEeeccCchh---HHHHhhcccCceEEEeecC
Confidence            8888877777788888776633               344566777888898876654   4566789999999999999


Q ss_pred             CC-eEEEEeCCCeEEEEECCCCc--EEEEecCCCcEEEEEEccCCCCEEEEEe--CCCeEEEEeCCCCeEE--EecCCCC
Q 011126          399 NG-FLLSSSADKTVRLWQVGIDR--CLRVFSHNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVV--DYTDIRE  471 (493)
Q Consensus       399 ~g-~l~sgs~Dg~V~lWd~~~~~--~~~~~~h~~~V~~v~fsp~d~~~l~sgs--~Dg~V~IWdl~~~~~~--~~~~~~~  471 (493)
                      ++ +||||+.|++|+|||+.+.+  .+.++....+|.+|.|-|.....|++++  .|-.|+|||++..-+-  .+..|..
T Consensus       231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~  310 (839)
T KOG0269|consen  231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD  310 (839)
T ss_pred             CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence            88 99999999999999998654  4566667899999999996666777776  4789999999876443  5788999


Q ss_pred             CeEEEEEccC-CCEEEEeecCC
Q 011126          472 IVSAVCYCPD-GKVRQNSACNF  492 (493)
Q Consensus       472 ~I~sv~~spd-G~~l~s~s~d~  492 (493)
                      .++.++|... -..+.+++.|.
T Consensus       311 ~vt~i~W~~~d~~~l~s~sKD~  332 (839)
T KOG0269|consen  311 SVTGIAWDSGDRINLWSCSKDG  332 (839)
T ss_pred             cccceeccCCCceeeEeecCcc
Confidence            9999999773 34555555553

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.85  E-value=1.9e-20  Score=176.79  Aligned_cols=222  Identities=18%  Similarity=0.321  Sum_probs=168.1

Q ss_pred             ceeeeecccccceec---cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126          230 AMARIIDRHGSATLK---PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (493)
Q Consensus       230 ~~~~~~~~~~~~~fs---p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (493)
                      .+.+|.+.+.++++.   +....+++++.|.++++|.++..........   ..+||...|-++...++|..+++|+.|.
T Consensus       139 ~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~---~~~GHk~~V~sVsv~~sgtr~~SgS~D~  215 (423)
T KOG0313|consen  139 TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK---VCRGHKRSVDSVSVDSSGTRFCSGSWDT  215 (423)
T ss_pred             EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh---HhcccccceeEEEecCCCCeEEeecccc
Confidence            345556666654443   3334699999999999999987665544333   2359999999999999999999999999


Q ss_pred             cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (493)
                      +|+||+... .....+.......                    .+...                .........|+..+.|
T Consensus       216 ~lkiWs~~~-~~~~~~E~~s~~r--------------------rk~~~----------------~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  216 MLKIWSVET-DEEDELESSSNRR--------------------RKKQK----------------REKEGGTRTPLVTLEG  258 (423)
T ss_pred             eeeecccCC-Cccccccccchhh--------------------hhhhh----------------hhhcccccCceEEecc
Confidence            999999322 1111111100000                    00000                0000112467889999


Q ss_pred             CCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC--eEE
Q 011126          387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--QVV  464 (493)
Q Consensus       387 h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~--~~~  464 (493)
                      |..+|.++.|++.+.+++++.|.+|+.||+.++.++..+.....++||..+| ..++|++|+.|..|++||.+++  .++
T Consensus       259 Ht~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v  337 (423)
T KOG0313|consen  259 HTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVV  337 (423)
T ss_pred             cccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCcee
Confidence            9999999999997799999999999999999999999999999999999999 9999999999999999999975  344


Q ss_pred             --EecCCCCCeEEEEEccCCCEE-EEeecCC
Q 011126          465 --DYTDIREIVSAVCYCPDGKVR-QNSACNF  492 (493)
Q Consensus       465 --~~~~~~~~I~sv~~spdG~~l-~s~s~d~  492 (493)
                        .+.+|.+-|.++.|+|...++ ++++.|+
T Consensus       338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~  368 (423)
T KOG0313|consen  338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN  368 (423)
T ss_pred             EEeeecchhhhhheecCCCCceEEEEEecCC
Confidence              589999999999999988765 5555554

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=4.2e-21  Score=182.79  Aligned_cols=258  Identities=19%  Similarity=0.226  Sum_probs=173.9

Q ss_pred             ccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeE
Q 011126          174 LQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHEL  250 (493)
Q Consensus       174 lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~l  250 (493)
                      |+-+..   |++||.++=+.+..     ||+.....         +        .+...++.+|...|.-+.|+||+++|
T Consensus       227 VWfl~FS~nGkyLAsaSkD~Tai-----iw~v~~d~---------~--------~kl~~tlvgh~~~V~yi~wSPDdryL  284 (519)
T KOG0293|consen  227 VWFLQFSHNGKYLASASKDSTAI-----IWIVVYDV---------H--------FKLKKTLVGHSQPVSYIMWSPDDRYL  284 (519)
T ss_pred             EEEEEEcCCCeeEeeccCCceEE-----EEEEecCc---------c--------eeeeeeeecccCceEEEEECCCCCeE
Confidence            444443   89999998887776     77754321         1        23344677888888889999999999


Q ss_pred             EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc-CCCC
Q 011126          251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ-DTDP  329 (493)
Q Consensus       251 asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~-~~~~  329 (493)
                      ++++.+..+++||+.++...  ..+.    .+|...+.+++|.|||..+++|+.|++|..||+.... ....+.. ...+
T Consensus       285 laCg~~e~~~lwDv~tgd~~--~~y~----~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v  357 (519)
T KOG0293|consen  285 LACGFDEVLSLWDVDTGDLR--HLYP----SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKV  357 (519)
T ss_pred             EecCchHheeeccCCcchhh--hhcc----cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhccccccccee
Confidence            99999999999999866532  2221    2356789999999999999999999999999985432 2222211 1223


Q ss_pred             ceEEEeeCCCCceeee--------eccCc----c---ccceeeeecCCCceEEEcCCC-----ceeec-ccceEEEecCC
Q 011126          330 SCLYFTINHLSQLIPI--------DVDKE----K---IDKTKSLRKSSDLTCVVLPPK-----VFRLL-EKPLHEFQGHS  388 (493)
Q Consensus       330 ~~~~~~~~~~~~~~~~--------~~~~~----~---~~~~~~~~~s~~~~~~~~~~~-----~~~~~-~~~~~~~~~h~  388 (493)
                      .+++++.++...+...        +....    .   ......+.-+.++..++....     .|++. .+.+..+.||.
T Consensus       358 ~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk  437 (519)
T KOG0293|consen  358 HDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK  437 (519)
T ss_pred             EEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccc
Confidence            3444444433222111        11000    0   011222333344433333221     22222 23456677887


Q ss_pred             CCEe--EEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          389 SEVL--DLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       389 ~~V~--~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      ..-.  .-+|...+  ++++|++|+.|+||+..+++++.++. |...|+||+|+|.+..+||+++.||+||||-+..
T Consensus       438 q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  438 QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            6433  33454433  99999999999999999999999996 9999999999999999999999999999998764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=3.3e-19  Score=165.40  Aligned_cols=237  Identities=18%  Similarity=0.222  Sum_probs=177.1

Q ss_pred             eecccccceeccCCCeEEeeecCCeEEEEECCCcccccc-------------------------------------cccc
Q 011126          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS-------------------------------------SLYT  276 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~-------------------------------------~~~~  276 (493)
                      ....+.++.|+++|.++++++.|.+++|||.........                                     .-..
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            346677899999999999999999999999865432110                                     0011


Q ss_pred             ceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (493)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (493)
                      .+.|.||...|+.|+.+|-+..+++++.|++||+||++..++...+.....+  ..++  +..+.++++...        
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~Af--Dp~GLifA~~~~--------  160 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAF--DPEGLIFALANG--------  160 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeE--CCCCcEEEEecC--------
Confidence            1347899999999999998899999999999999999988776666554332  2222  222333333222        


Q ss_pred             eeecCCCceEEEcCCCceeecccceEEEe---cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CC---
Q 011126          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQ---GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HN---  428 (493)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~---  428 (493)
                            ...+.+++.+.+..  .|..++.   +.....+.|.|+|+| +|+.+...+.+++.|.-.|..+..+. +.   
T Consensus       161 ------~~~IkLyD~Rs~dk--gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~  232 (311)
T KOG1446|consen  161 ------SELIKLYDLRSFDK--GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG  232 (311)
T ss_pred             ------CCeEEEEEecccCC--CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence                  22455555544432  3333333   336688999999999 88888999999999999999998886 22   


Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecC-CCCCeEEEEEccCCCEEEEeecC
Q 011126          429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTD-IREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       429 ~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~-~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ..-...+|.| +++++++|+.||+|.+|+++++..+ .+.+ +..++..+.|+|.-..+++++..
T Consensus       233 ~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~  296 (311)
T KOG1446|consen  233 NLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSN  296 (311)
T ss_pred             CcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCce
Confidence            2225789999 9999999999999999999999877 4655 68899999999999888888753

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=1.6e-19  Score=166.18  Aligned_cols=235  Identities=17%  Similarity=0.253  Sum_probs=170.9

Q ss_pred             ecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126          235 IDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       235 ~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl  313 (493)
                      .|.+.+++|+| ...++++|+.|++||+|+++....     ...+....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCc-----ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence            46778899999 555666899999999999986421     112345679999999999999999999999999999999


Q ss_pred             CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc-------------eee----
Q 011126          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-------------FRL----  376 (493)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-------------~~~----  376 (493)
                      .++ ++..+..|..++.++.|........+              .+++-|.++..|+.+.             +..    
T Consensus       102 ~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl--------------~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~  166 (347)
T KOG0647|consen  102 ASG-QVSQVAAHDAPVKTCHWVPGMNYQCL--------------VTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY  166 (347)
T ss_pred             cCC-CeeeeeecccceeEEEEecCCCccee--------------EecccccceeecccCCCCeeeeeeccceeeehhccC
Confidence            999 56677788888888877666543222              2222233333333221             100    


Q ss_pred             -------c---------ccceEEEecC----CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEE--EEec-CC----
Q 011126          377 -------L---------EKPLHEFQGH----SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--RVFS-HN----  428 (493)
Q Consensus       377 -------~---------~~~~~~~~~h----~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~--~~~~-h~----  428 (493)
                             .         +.+...++.+    .-.+.||+..+++ ..+.|+-.|.+-|..+..+...  .+|+ |.    
T Consensus       167 pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~  246 (347)
T KOG0647|consen  167 PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS  246 (347)
T ss_pred             ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC
Confidence                   0         0111122222    2357899988887 7799999999999998876332  2333 33    


Q ss_pred             -----CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeec
Q 011126          429 -----NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       429 -----~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                           -.|++|+|+| ....|+|.+.||++.+||-.....+ ....|..+|++.+|+.+|.+++-+.+
T Consensus       247 ~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  247 VNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             CCCceEEecceEeec-ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence                 2588999999 7788999999999999999876555 56889999999999999999986654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=4.4e-20  Score=179.55  Aligned_cols=234  Identities=18%  Similarity=0.210  Sum_probs=187.8

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      +....+.+.+++|+|...+=.+-...-+|.||+.....       ..+.+...+..|+++.|..||++||+|...|.|+|
T Consensus        22 ~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~-------~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~v   94 (487)
T KOG0310|consen   22 VHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS-------VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKV   94 (487)
T ss_pred             cccccCcceeEecCCCCCCceEEecccEEEEEecchhh-------hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEE
Confidence            33445677789999987765555556789999876433       22234456788999999999999999999999999


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      +|+.+...+..+..+..++....|++....               ....++.+..+.+|+...-.    ....+.+|+..
T Consensus        95 fD~k~r~iLR~~~ah~apv~~~~f~~~d~t---------------~l~s~sDd~v~k~~d~s~a~----v~~~l~~htDY  155 (487)
T KOG0310|consen   95 FDMKSRVILRQLYAHQAPVHVTKFSPQDNT---------------MLVSGSDDKVVKYWDLSTAY----VQAELSGHTDY  155 (487)
T ss_pred             eccccHHHHHHHhhccCceeEEEecccCCe---------------EEEecCCCceEEEEEcCCcE----EEEEecCCcce
Confidence            998777778888888888888888776533               33455666666666665433    14478899999


Q ss_pred             EeEEEEeCCC--eEEEEeCCCeEEEEECCCC-cEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC-CeEEE-
Q 011126          391 VLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVVD-  465 (493)
Q Consensus       391 V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~-~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~-~~~~~-  465 (493)
                      |.|.+|+|.+  +++||+.||+||+||+++. ..+..+.|..+|-.+.+-| .|..||+++.. .|+|||+-+ ++.+. 
T Consensus       156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAgGn-~vkVWDl~~G~qll~~  233 (487)
T KOG0310|consen  156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAGGN-SVKVWDLTTGGQLLTS  233 (487)
T ss_pred             eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcCCC-eEEEEEecCCceehhh
Confidence            9999999976  8999999999999999987 7888899999999999999 88999998754 699999995 45554 


Q ss_pred             ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          466 YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       466 ~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ...|...||++++..++..|++++=|.
T Consensus       234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~  260 (487)
T KOG0310|consen  234 MFNHNKTVTCLRLASDSTRLLSGSLDR  260 (487)
T ss_pred             hhcccceEEEEEeecCCceEeeccccc
Confidence            455999999999999999999998663

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.1e-19  Score=168.24  Aligned_cols=243  Identities=14%  Similarity=0.194  Sum_probs=174.4

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccc----------cc----------------------ccccc
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE----------LS----------------------SLYTG  277 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~----------~~----------------------~~~~~  277 (493)
                      .+.+|.+.+.+++|+.+|++||+.+.|+.|+||+++.-...          +.                      .++..
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            47788999999999999999999999999999998652110          00                      00000


Q ss_pred             e--------------------eeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeC
Q 011126          278 Q--------------------EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN  337 (493)
Q Consensus       278 ~--------------------~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~  337 (493)
                      .                    --..|+-.|..+-...++.+|++++.|..|.+|++. |+.+..+..........+.+++
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~  239 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD  239 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence            0                    012345556666667788899999999999999997 8989888888777776777666


Q ss_pred             CCCceeeeeccCccccceeeeecCCCceEEEcCC----CceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEE
Q 011126          338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP----KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVR  412 (493)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~  412 (493)
                      +.... ...+..+               +.+|.+    +..-..-+.+..++||...|+.++|+|+. .++|.+.||+++
T Consensus       240 GRFia-~~gFTpD---------------VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr  303 (420)
T KOG2096|consen  240 GRFIA-VSGFTPD---------------VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR  303 (420)
T ss_pred             CcEEE-EecCCCC---------------ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEE
Confidence            63221 1111111               112211    11111124467789999999999999998 999999999999


Q ss_pred             EEECCC-------CcEEEEec-----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCCeEEEEE
Q 011126          413 LWQVGI-------DRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCY  478 (493)
Q Consensus       413 lWd~~~-------~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~--~~~~~~~I~sv~~  478 (493)
                      |||+.-       ...++++.     ..+....+.++| .++.||.. ....++++..++++...  ...|...|++|+|
T Consensus       304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~  381 (420)
T KOG2096|consen  304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISY  381 (420)
T ss_pred             EeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEe
Confidence            999853       22333331     233444899999 88888775 45579999999988774  4568889999999


Q ss_pred             ccCCCEEEEeecC
Q 011126          479 CPDGKVRQNSACN  491 (493)
Q Consensus       479 spdG~~l~s~s~d  491 (493)
                      +|+|+++++.|..
T Consensus       382 ~~~g~~~atcGdr  394 (420)
T KOG2096|consen  382 SSDGKYIATCGDR  394 (420)
T ss_pred             cCCCcEEeeecce
Confidence            9999999998754

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.85  E-value=7.2e-20  Score=190.44  Aligned_cols=225  Identities=23%  Similarity=0.375  Sum_probs=186.7

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      +.+|.+.+.++++...+.+|++|+.|.+++|||+.+..       +...+.+|++.|.+|...  +.++++|+.|.+|++
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-------C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkV  315 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-------CTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKV  315 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-------EEEEecCCCceEEEEEcc--CceEeeccCCceEEE
Confidence            66788888889998888999999999999999987554       555789999999999885  557889999999999


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      |++.++..+..+..+...+.++...                  ....+.++.++.+.+|+...    .+++..+.+|...
T Consensus       316 W~v~n~~~l~l~~~h~~~V~~v~~~------------------~~~lvsgs~d~~v~VW~~~~----~~cl~sl~gH~~~  373 (537)
T KOG0274|consen  316 WDVTNGACLNLLRGHTGPVNCVQLD------------------EPLLVSGSYDGTVKVWDPRT----GKCLKSLSGHTGR  373 (537)
T ss_pred             EeccCcceEEEeccccccEEEEEec------------------CCEEEEEecCceEEEEEhhh----ceeeeeecCCcce
Confidence            9999999998888776666665543                  23346778888999998873    5668999999999


Q ss_pred             EeEEEEeCCCeEEEEeCCCeEEEEECCCC-cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec
Q 011126          391 VLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT  467 (493)
Q Consensus       391 V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~  467 (493)
                      |.++.+.+..++++|+.|++|++||+.+. +|+.++. |...|..+.+   .+++|++++.|++|++||..+++.+. +.
T Consensus       374 V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~  450 (537)
T KOG0274|consen  374 VYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEGECLRTLE  450 (537)
T ss_pred             EEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEeccccccEEEeecccCceeeeec
Confidence            99999887569999999999999999999 9999987 7788877776   56899999999999999999998885 44


Q ss_pred             C-CCCCeEEEEEccCCCEEEEeecC
Q 011126          468 D-IREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       468 ~-~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      . +...|+++++.  ...+++++.+
T Consensus       451 ~~~~~~v~~l~~~--~~~il~s~~~  473 (537)
T KOG0274|consen  451 GRHVGGVSALALG--KEEILCSSDD  473 (537)
T ss_pred             cCCcccEEEeecC--cceEEEEecC
Confidence            4 55888888876  3345555443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.84  E-value=2e-19  Score=172.43  Aligned_cols=238  Identities=17%  Similarity=0.239  Sum_probs=195.4

Q ss_pred             ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (493)
Q Consensus       227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (493)
                      -+..+.+|...+.++.++|+...+++++.|..|+||.......       ......|..+|+.+..+|.|.||++++.||
T Consensus       253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~  325 (506)
T KOG0289|consen  253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-------PTSSRPHEEPVTGLSLHPTGEYLLSASNDG  325 (506)
T ss_pred             hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-------ccccccccccceeeeeccCCcEEEEecCCc
Confidence            3445778888899999999999999999999999999875442       224678999999999999999999999999


Q ss_pred             cEEEEecCCCeeeeeeeccC--CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          307 TVRVWKVIEHERLDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                      +..+.|+.++..+.......  ....+..|.+++                ..+..+..++.+.+|+.+...    .+..|
T Consensus       326 ~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg----------------Lifgtgt~d~~vkiwdlks~~----~~a~F  385 (506)
T KOG0289|consen  326 TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG----------------LIFGTGTPDGVVKIWDLKSQT----NVAKF  385 (506)
T ss_pred             eEEEEEccCCcEEEEEeeccccceeEEeeEcCCc----------------eEEeccCCCceEEEEEcCCcc----ccccC
Confidence            99999999998876655432  223344444333                344567788888888877543    46789


Q ss_pred             ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~  461 (493)
                      .+|.++|..|+|+.+| +|++++.|+.|++||++..+..+++.  ....|.++.|.+ .|.||+.++.|=+|++++-.+.
T Consensus       386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k  464 (506)
T KOG0289|consen  386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKTK  464 (506)
T ss_pred             CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeecceeEEEEEecccc
Confidence            9999999999999999 99999999999999999988888886  334699999999 9999999998888888876655


Q ss_pred             e---EEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          462 Q---VVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       462 ~---~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +   +..+..|.+..+.+.|....+++++++-|.
T Consensus       465 ~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~  498 (506)
T KOG0289|consen  465 SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA  498 (506)
T ss_pred             cceeeehhhhcccccceeeecccceEEeeccchh
Confidence            3   335778888999999999999999988763

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.6e-20  Score=168.90  Aligned_cols=204  Identities=20%  Similarity=0.312  Sum_probs=162.3

Q ss_pred             ceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCc
Q 011126          230 AMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGT  307 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~  307 (493)
                      ..+.|...+.++.+++.. ..+++++-|++||+|+....+       ..+++.+|..-|+..+|+| .++++++++.|++
T Consensus        99 ~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   99 KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-------ceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence            344455556667776654 567788999999999976332       3457899999999999999 6789999999999


Q ss_pred             EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (493)
                      +++||++.......+..+...+.++.|+               +.......+++.+..+..|+.+..+   .|+..+.+|
T Consensus       172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~---------------ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh  233 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSIEAHNSEILCCDWS---------------KYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNGH  233 (311)
T ss_pred             EEEEEecCCCceeEEEeccceeEeeccc---------------ccCCcEEEecCCCceEEEEehhhcc---ccceeecCC
Confidence            9999997655444455555444443333               3334455678889999999998766   578899999


Q ss_pred             CCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC-CcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126          388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       388 ~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl  458 (493)
                      .-.|..++|||..  +|++++.|-++||||... ..++.+.. |+..|..+.|++.++.++|+++.|+.++||+.
T Consensus       234 ~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  234 GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9999999999987  999999999999999874 44555554 88999999999999999999999999999984

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.84  E-value=1.6e-19  Score=187.82  Aligned_cols=222  Identities=23%  Similarity=0.353  Sum_probs=181.6

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~  315 (493)
                      ..+.+..|+  +.++++++.+++|++|+.........      .+.+|.+.|++++|..-+.+|++|+.|.+++|||+.+
T Consensus       209 ~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  209 HVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             chhhhheee--cCeEEecCCCceeEEeecccceEEEe------eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence            344445666  67899999999999999875543322      3789999999999987788999999999999999999


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      +++...+..+...+.++..                  .......++.|.++.+|+...    ...++.+.+|.++|.++.
T Consensus       281 g~C~~~l~gh~stv~~~~~------------------~~~~~~sgs~D~tVkVW~v~n----~~~l~l~~~h~~~V~~v~  338 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVRCLTI------------------DPFLLVSGSRDNTVKVWDVTN----GACLNLLRGHTGPVNCVQ  338 (537)
T ss_pred             CcEEEEecCCCceEEEEEc------------------cCceEeeccCCceEEEEeccC----cceEEEeccccccEEEEE
Confidence            9999999877665555443                  223334578889999998873    345777888999999999


Q ss_pred             EeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC-eEE-EecCCCCC
Q 011126          396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVV-DYTDIREI  472 (493)
Q Consensus       396 ~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~-~~~-~~~~~~~~  472 (493)
                      .+ .+++++|+.|++|++||+.+++|++.+. |...|+++.+.+ . .++++|+.|++|++||+.+. +++ .+..|...
T Consensus       339 ~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~  415 (537)
T KOG0274|consen  339 LD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL  415 (537)
T ss_pred             ec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCccc
Confidence            98 3499999999999999999999999997 999999999866 3 99999999999999999999 766 46777777


Q ss_pred             eEEEEEccCCCEEEEeecCC
Q 011126          473 VSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       473 I~sv~~spdG~~l~s~s~d~  492 (493)
                      ++.  ....++.|++++.|.
T Consensus       416 v~~--l~~~~~~Lvs~~aD~  433 (537)
T KOG0274|consen  416 VSS--LLLRDNFLVSSSADG  433 (537)
T ss_pred             ccc--cccccceeEeccccc
Confidence            744  445677888887764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.83  E-value=1.2e-19  Score=175.42  Aligned_cols=244  Identities=21%  Similarity=0.303  Sum_probs=193.2

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccccc----------ccccceee-ecccCCEEEEEEccCC
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------SLYTGQEF-LAHEGSILTMKFSLDG  296 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~----------~~~~~~~l-~~H~~~I~~l~fspdg  296 (493)
                      +..+..|.-.+.+++++|++.+..+++.+++|.=|++........          .....+.- .+|...|.+++.++||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            344556777778899999999999999999999999876553210          11111111 3899999999999999


Q ss_pred             CEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126          297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (493)
Q Consensus       297 ~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  376 (493)
                      +|||+|+.|..|.||+..+.+.++.+..+...+.++.|..+..                ..+..+.+..+.+|......+
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~----------------~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTS----------------ELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCcc----------------ceeeeecCCceEEEehhHhHH
Confidence            9999999999999999999999999998888888777755442                234556677788887765443


Q ss_pred             cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEE
Q 011126          377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (493)
Q Consensus       377 ~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I  455 (493)
                          +.++.||...|.+|....-+ .+..|+.|++++||++.....+....+.+.+-|++|-  +...|++|+.||.|.+
T Consensus       279 ----vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaL  352 (479)
T KOG0299|consen  279 ----VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIAL  352 (479)
T ss_pred             ----HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEE
Confidence                56788999999999887777 4445559999999999666666555688999999997  5788999999999999


Q ss_pred             EeCCCCeEEEe--cC-----------CCCCeEEEEEccCCCEEEEeecCCC
Q 011126          456 WEVRRCQVVDY--TD-----------IREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       456 Wdl~~~~~~~~--~~-----------~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      |++.+.+++..  ..           ++..|++++..|...++++|++++|
T Consensus       353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~  403 (479)
T KOG0299|consen  353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC  403 (479)
T ss_pred             eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc
Confidence            99998877631  11           1227999999999999999998876

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=1.1e-19  Score=174.78  Aligned_cols=258  Identities=17%  Similarity=0.202  Sum_probs=186.0

Q ss_pred             ccCCCcccccccccCCCCCCccccccCCccccccccchhh-hhhhhccccccccCceeeeecccccceeccCC-CeEEee
Q 011126          176 ESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVD-AKRKVKRGWLKKLGAMARIIDRHGSATLKPGD-HELTLG  253 (493)
Q Consensus       176 ~v~~~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~-~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g-~~lasg  253 (493)
                      .=+.|+++|+..|++.+-     ||.|--+......-..+ ...++++...++.....+|.+.+-.++|...- +.||+|
T Consensus       188 ~~~~gNyvAiGtmdp~Ie-----IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSg  262 (463)
T KOG0270|consen  188 SGGAGNYVAIGTMDPEIE-----IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASG  262 (463)
T ss_pred             CCCCcceEEEeccCceeE-----EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEec
Confidence            344589999999999988     99986665543333323 22223333333555677888888888887765 578999


Q ss_pred             ecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCeee-eeeeccCCCCce
Q 011126          254 QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERL-DGFDVQDTDPSC  331 (493)
Q Consensus       254 s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~~-~~~~~~~~~~~~  331 (493)
                      +.|.+|++||+.+.+       +.+++..|.+.|.+++|+| ...+|++|+.|++|++.|.+..... ..++. ...+-.
T Consensus       263 saD~TV~lWD~~~g~-------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g~VEk  334 (463)
T KOG0270|consen  263 SADKTVKLWDVDTGK-------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-DGEVEK  334 (463)
T ss_pred             CCCceEEEEEcCCCC-------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-ccceEE
Confidence            999999999998655       3445778999999999999 5679999999999999999742211 11111 111222


Q ss_pred             EEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCC
Q 011126          332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADK  409 (493)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg  409 (493)
                      +.|.+..               ...++.+..++.++.++.+..   .+++.+++.|.+.|.+|++++..  +|+|++.|+
T Consensus       335 v~w~~~s---------------e~~f~~~tddG~v~~~D~R~~---~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~  396 (463)
T KOG0270|consen  335 VAWDPHS---------------ENSFFVSTDDGTVYYFDIRNP---GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK  396 (463)
T ss_pred             EEecCCC---------------ceeEEEecCCceEEeeecCCC---CCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence            2332222               123345567778888777654   38899999999999999999875  999999999


Q ss_pred             eEEEEECCCCcEEEEecC---CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          410 TVRLWQVGIDRCLRVFSH---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       410 ~V~lWd~~~~~~~~~~~h---~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      +|+||++.......+..|   -+...|.++.|....+++.|+..+.++|||+.+...+
T Consensus       397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            999999976555433332   2447788999966778889999999999999887654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=2.5e-19  Score=180.40  Aligned_cols=219  Identities=21%  Similarity=0.300  Sum_probs=176.3

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  320 (493)
                      +.|+ ..+.||+| ....|.+|+.......  .     ...-+...|+++.|+++|.+||+|..+|.|.|||+.+.+.+.
T Consensus       183 ldWs-s~n~laVa-lg~~vylW~~~s~~v~--~-----l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~  253 (484)
T KOG0305|consen  183 LDWS-SANVLAVA-LGQSVYLWSASSGSVT--E-----LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR  253 (484)
T ss_pred             hhcc-cCCeEEEE-ecceEEEEecCCCceE--E-----eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc
Confidence            6677 44456666 4457999998755411  1     122247899999999999999999999999999999999888


Q ss_pred             eeec-cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126          321 GFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (493)
Q Consensus       321 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (493)
                      .+.. +...+.++.|.                  ......++.++.++.++.+.......   .+.+|...|..++|+++
T Consensus       254 ~~~~~h~~rvg~laW~------------------~~~lssGsr~~~I~~~dvR~~~~~~~---~~~~H~qeVCgLkws~d  312 (484)
T KOG0305|consen  254 TLRGSHASRVGSLAWN------------------SSVLSSGSRDGKILNHDVRISQHVVS---TLQGHRQEVCGLKWSPD  312 (484)
T ss_pred             cccCCcCceeEEEecc------------------CceEEEecCCCcEEEEEEecchhhhh---hhhcccceeeeeEECCC
Confidence            8887 55555555554                  12234667777777777665443222   37889999999999999


Q ss_pred             C-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEe--CCCeEEEEeCCCCeEEEecCCCCCeEE
Q 011126          400 G-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVVDYTDIREIVSA  475 (493)
Q Consensus       400 g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs--~Dg~V~IWdl~~~~~~~~~~~~~~I~s  475 (493)
                      + +||+|+.|+.+.|||.....++..+ .|.+.|..++|+|....+||+|+  .|+.|++||..+++.+........|.+
T Consensus       313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcs  392 (484)
T KOG0305|consen  313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCS  392 (484)
T ss_pred             CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceee
Confidence            9 9999999999999999777766666 49999999999999899999975  599999999999999999999999999


Q ss_pred             EEEccCCCEEEEee
Q 011126          476 VCYCPDGKVRQNSA  489 (493)
Q Consensus       476 v~~spdG~~l~s~s  489 (493)
                      |.|++..+-|+++.
T Consensus       393 L~Wsk~~kEi~sth  406 (484)
T KOG0305|consen  393 LIWSKKYKELLSTH  406 (484)
T ss_pred             EEEcCCCCEEEEec
Confidence            99999998777654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.7e-18  Score=159.68  Aligned_cols=244  Identities=18%  Similarity=0.265  Sum_probs=174.9

Q ss_pred             eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcEE
Q 011126          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVR  309 (493)
Q Consensus       232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V~  309 (493)
                      ++|.|.+.++.|.+.|+.+|+++.|++|+|||..+...   .+.+....++|.+.|+.|.|.+  -|+.+|+++.|++++
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~---~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG---TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC---ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            45678888999999999999999999999999754432   4445567899999999999976  699999999999999


Q ss_pred             EEecCC---------CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCC------Cce
Q 011126          310 VWKVIE---------HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP------KVF  374 (493)
Q Consensus       310 iWdl~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~------~~~  374 (493)
                      ||.-..         .....++......+..+.|.+.+.+.              .....+.++.+.++..      ..|
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL--------------klA~~~aDG~lRIYEA~dp~nLs~W  152 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL--------------KLAAASADGILRIYEAPDPMNLSQW  152 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcce--------------EEEEeccCcEEEEEecCCccccccc
Confidence            997521         11223333344445555555555432              3344555666666533      222


Q ss_pred             eeccc---ceEEEecCCCCEeEEEEeCCC----eEEEEeCC-----CeEEEEECCCCc--EEEE--e-cCCCcEEEEEEc
Q 011126          375 RLLEK---PLHEFQGHSSEVLDLSWSKNG----FLLSSSAD-----KTVRLWQVGIDR--CLRV--F-SHNNYVTSVAFN  437 (493)
Q Consensus       375 ~~~~~---~~~~~~~h~~~V~~l~~sp~g----~l~sgs~D-----g~V~lWd~~~~~--~~~~--~-~h~~~V~~v~fs  437 (493)
                      .+..+   .+.....+.....|+.|+|..    +|+.|+.+     +.+.||......  .++.  + .|+++|+.|+|.
T Consensus       153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA  232 (361)
T KOG2445|consen  153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA  232 (361)
T ss_pred             hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence            22111   111223467788999999864    77777765     478999765432  2222  2 399999999999


Q ss_pred             cCCC---CEEEEEeCCCeEEEEeCCCC--------------------eEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          438 PVDD---NYFISGSIDGKVRIWEVRRC--------------------QVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       438 p~d~---~~l~sgs~Dg~V~IWdl~~~--------------------~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      |.-|   .+||+++.|| |+||.+...                    +.+ .+.+|++.|+.++|+-.|..|+++|.|+|
T Consensus       233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~  311 (361)
T KOG2445|consen  233 PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC  311 (361)
T ss_pred             cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce
Confidence            9544   3789999999 999999731                    112 36789999999999999999999999987

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.83  E-value=9.7e-19  Score=194.34  Aligned_cols=222  Identities=17%  Similarity=0.232  Sum_probs=162.3

Q ss_pred             CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEe
Q 011126          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT  335 (493)
Q Consensus       256 dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~  335 (493)
                      +|.+++|+.......  .......+.+|.+.|.+++|+|+|++||+|+.|++|+||++........ ..+   .....+ 
T Consensus       457 ~gl~~~~~~~~~~~~--~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~~~---~~~~~~-  529 (793)
T PLN00181        457 EGLCKYLSFSKLRVK--ADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-DIH---YPVVEL-  529 (793)
T ss_pred             hhhhhhhcccceEEE--EeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-ccc---cceEEe-
Confidence            567888887644321  1122235667999999999999999999999999999999754210000 000   000000 


Q ss_pred             eCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC-CC-eEEEEeCCCeEEE
Q 011126          336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRL  413 (493)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g-~l~sgs~Dg~V~l  413 (493)
                       .....+..+.+...  .....+.++.++.+.+|+....    +.+..+.+|...|++++|+| ++ +|++|+.|++|++
T Consensus       530 -~~~~~v~~l~~~~~--~~~~las~~~Dg~v~lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~i  602 (793)
T PLN00181        530 -ASRSKLSGICWNSY--IKSQVASSNFEGVVQVWDVARS----QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKL  602 (793)
T ss_pred             -cccCceeeEEeccC--CCCEEEEEeCCCeEEEEECCCC----eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEE
Confidence             11112222222111  1123456777889999987643    34677889999999999997 56 9999999999999


Q ss_pred             EECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe--EEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          414 WQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       414 Wd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~--~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ||++++.++..+.+...|.++.|++.++.+|++|+.||.|++||+++.+  ...+..|...|+++.|. ++.+|++++.|
T Consensus       603 Wd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D  681 (793)
T PLN00181        603 WSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD  681 (793)
T ss_pred             EECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC
Confidence            9999999999888778899999976479999999999999999998765  33577899999999997 78899999877


Q ss_pred             C
Q 011126          492 F  492 (493)
Q Consensus       492 ~  492 (493)
                      .
T Consensus       682 ~  682 (793)
T PLN00181        682 N  682 (793)
T ss_pred             C
Confidence            5

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.83  E-value=3.9e-20  Score=179.61  Aligned_cols=222  Identities=17%  Similarity=0.214  Sum_probs=164.9

Q ss_pred             ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECC
Q 011126          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGED  305 (493)
Q Consensus       227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~D  305 (493)
                      .+.+..+|...|..++|+++|..+++++.|+.|++||++++....       .+. -...++|++|+|++ +.+++|+.|
T Consensus       250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~-------~f~-~~~~~~cvkf~pd~~n~fl~G~sd  321 (503)
T KOG0282|consen  250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS-------RFH-LDKVPTCVKFHPDNQNIFLVGGSD  321 (503)
T ss_pred             eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE-------EEe-cCCCceeeecCCCCCcEEEEecCC
Confidence            345677888889999999999999999999999999998766322       121 23468999999988 788999999


Q ss_pred             CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeecc--------Cccccc-------------------eeee
Q 011126          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVD--------KEKIDK-------------------TKSL  358 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-------------------~~~~  358 (493)
                      +.|+.||+++++.++.+..+-..+..+.|...+...+...+..        ..-..+                   ....
T Consensus       322 ~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~  401 (503)
T KOG0282|consen  322 KKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFA  401 (503)
T ss_pred             CcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeeh
Confidence            9999999999999998888877777777766654433322211        110000                   0111


Q ss_pred             ecCCCceEEEcCCCceeecccceEEEecCCC--CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEE
Q 011126          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSV  434 (493)
Q Consensus       359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v  434 (493)
                      ..+.+..+.++... ..........+.||..  .-..+.|||+| +|++|..||.+.+||.++.+.+..++ |...++.+
T Consensus       402 aQs~dN~i~ifs~~-~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v  480 (503)
T KOG0282|consen  402 AQSMDNYIAIFSTV-PPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGV  480 (503)
T ss_pred             hhccCceEEEEecc-cccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEE
Confidence            22223333333211 1111223445677754  45678899999 99999999999999999999998887 88999999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEe
Q 011126          435 AFNPVDDNYFISGSIDGKVRIWE  457 (493)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~V~IWd  457 (493)
                      .|+|.....+|+|+.||.|++||
T Consensus       481 ~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  481 DWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EecCCCcceeEecccCceeEecC
Confidence            99998899999999999999996

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.82  E-value=2.4e-19  Score=173.25  Aligned_cols=213  Identities=19%  Similarity=0.339  Sum_probs=172.8

Q ss_pred             ceeeeecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCc
Q 011126          230 AMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGT  307 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~  307 (493)
                      .+.+|.+....++|++... .|++|+.|++|.+||+.....+-........+.+|...|..++|++ +..++++++.|+.
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~  251 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK  251 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence            4555655455578887654 7889999999999999876665334445567899999999999999 6668899999999


Q ss_pred             EEEEecC--CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          308 VRVWKVI--EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       308 V~iWdl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      +.|||++  +.+.......+...+.|+.|.+...               ....+++.++++.+|+.+....   +++.+.
T Consensus       252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~---------------~ilAT~S~D~tV~LwDlRnL~~---~lh~~e  313 (422)
T KOG0264|consen  252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE---------------FILATGSADKTVALWDLRNLNK---PLHTFE  313 (422)
T ss_pred             EEEEEcCCCCCCCcccccccCCceeEEEeCCCCC---------------ceEEeccCCCcEEEeechhccc---Cceecc
Confidence            9999999  4555666777778888888876653               3345778899999999987654   799999


Q ss_pred             cCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc--------------EEEEe-cCCCcEEEEEEccCCCCEEEEEe
Q 011126          386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR--------------CLRVF-SHNNYVTSVAFNPVDDNYFISGS  448 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~--------------~~~~~-~h~~~V~~v~fsp~d~~~l~sgs  448 (493)
                      +|...|.+|.|+|+.  .|++++.|+.+.|||+..-.              .+.+. +|...|+.+.|+|...-.|++.+
T Consensus       314 ~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva  393 (422)
T KOG0264|consen  314 GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA  393 (422)
T ss_pred             CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence            999999999999987  99999999999999986321              12222 38899999999997778899999


Q ss_pred             CCCeEEEEeCCC
Q 011126          449 IDGKVRIWEVRR  460 (493)
Q Consensus       449 ~Dg~V~IWdl~~  460 (493)
                      .|+.+.||.+..
T Consensus       394 eDN~LqIW~~s~  405 (422)
T KOG0264|consen  394 EDNILQIWQMAE  405 (422)
T ss_pred             CCceEEEeeccc
Confidence            999999999863

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.82  E-value=5.6e-19  Score=161.92  Aligned_cols=213  Identities=20%  Similarity=0.300  Sum_probs=158.8

Q ss_pred             eeeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccc-ccc-----c--cceeeecccCCEEEEEEcc-CCCEEE
Q 011126          231 MARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSREL-SSL-----Y--TGQEFLAHEGSILTMKFSL-DGQYLA  300 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~-~~~-----~--~~~~l~~H~~~I~~l~fsp-dg~~La  300 (493)
                      ...|...++++.+.+ .|+++++|+.||.|.|||++...... +.+     .  ..+.-.+|+-.|..+.|-| |...+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            344667778888876 57899999999999999998654211 111     0  1122357888999999999 666888


Q ss_pred             EEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (493)
Q Consensus       301 sgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (493)
                      +++.|.+++|||..+-+....++.+... ..-+             +.+..........+..+..+.+.+....    ..
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~me~~V-Ysha-------------mSp~a~sHcLiA~gtr~~~VrLCDi~SG----s~  180 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFKMEGKV-YSHA-------------MSPMAMSHCLIAAGTRDVQVRLCDIASG----SF  180 (397)
T ss_pred             cccccceEEEeecccceeeEEeecCcee-ehhh-------------cChhhhcceEEEEecCCCcEEEEeccCC----cc
Confidence            9999999999999998887777665431 1111             1112222333445566666666666543    34


Q ss_pred             eEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCC-cEEEEe---------------cCCCcEEEEEEccCCCC
Q 011126          381 LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVF---------------SHNNYVTSVAFNPVDDN  442 (493)
Q Consensus       381 ~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~-~~~~~~---------------~h~~~V~~v~fsp~d~~  442 (493)
                      .+.+.||.+.|.++.|+|..  .|++|+.||.|++||++.. .|..++               .|.+.|+.++|.. ++.
T Consensus       181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~  259 (397)
T KOG4283|consen  181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DAR  259 (397)
T ss_pred             eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cch
Confidence            68899999999999999987  8999999999999999754 343333               2778999999999 999


Q ss_pred             EEEEEeCCCeEEEEeCCCCe
Q 011126          443 YFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       443 ~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      ++++++.|.++++|+...|+
T Consensus       260 ~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  260 YLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             hhhhccCccceEEeecccCc
Confidence            99999999999999998764

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=1.9e-19  Score=169.96  Aligned_cols=202  Identities=18%  Similarity=0.306  Sum_probs=157.2

Q ss_pred             ccccccCceeeeecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEE
Q 011126          223 GWLKKLGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLA  300 (493)
Q Consensus       223 ~w~~~~~~~~~~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~La  300 (493)
                      .-.+.+.+..+|...-..+.|+|-.. .|++|..-+.|++|....+......    +.|.+|+..|-.|+|||. ...|+
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~----~Pf~gH~~SVEDLqWSptE~~vfa  274 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ----RPFTGHTKSVEDLQWSPTEDGVFA  274 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecC----ccccccccchhhhccCCccCceEE
Confidence            33455666777777777799999443 4888888899999998876655432    246789999999999995 45899


Q ss_pred             EEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (493)
Q Consensus       301 sgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (493)
                      ||+-||+|+|||++.+...                                                            +
T Consensus       275 ScS~DgsIrIWDiRs~~~~------------------------------------------------------------~  294 (440)
T KOG0302|consen  275 SCSCDGSIRIWDIRSGPKK------------------------------------------------------------A  294 (440)
T ss_pred             eeecCceEEEEEecCCCcc------------------------------------------------------------c
Confidence            9999999999999876421                                                            1


Q ss_pred             eEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC---CcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEE
Q 011126          381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (493)
Q Consensus       381 ~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~---~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I  455 (493)
                      ....+.|.+.|+.|.|+..- +||+|+.||+++|||++.   ++++..|+ |..+|++|.|+|.+...|++++.|..|.|
T Consensus       295 ~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  295 AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence            12236799999999999887 999999999999999974   56778887 99999999999988889999999999999


Q ss_pred             EeCCCCe-------------------EEEecCCCCCeEEEEEccCCCEEEEe
Q 011126          456 WEVRRCQ-------------------VVDYTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       456 Wdl~~~~-------------------~~~~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      ||+.--.                   ++........|..+.|+++-..++++
T Consensus       375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs  426 (440)
T KOG0302|consen  375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS  426 (440)
T ss_pred             EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence            9996211                   11122233457788999986654443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.82  E-value=7.3e-19  Score=159.26  Aligned_cols=248  Identities=16%  Similarity=0.223  Sum_probs=183.7

Q ss_pred             hhhhcccccc----ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEE
Q 011126          217 KRKVKRGWLK----KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF  292 (493)
Q Consensus       217 ~~~~k~~w~~----~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f  292 (493)
                      |......|..    +++.+.+|...+.++..+.+.+++++|+.|.++++||++.++....        -.-..+|..+.|
T Consensus        30 KD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~--------~k~~~~Vk~~~F  101 (327)
T KOG0643|consen   30 KDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLAT--------WKTNSPVKRVDF  101 (327)
T ss_pred             CCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEE--------eecCCeeEEEee
Confidence            4444555654    6788899999999999999999999999999999999997764332        124578999999


Q ss_pred             ccCCCEEEEEE-----CCCcEEEEecCCC-------eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeec
Q 011126          293 SLDGQYLASGG-----EDGTVRVWKVIEH-------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (493)
Q Consensus       293 spdg~~Lasgs-----~Dg~V~iWdl~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (493)
                      +++|++++.+.     ..+.|.++|+...       ++...+..+...+..+.|.+-.                ...+.+
T Consensus       102 ~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~----------------~~ii~G  165 (327)
T KOG0643|consen  102 SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG----------------ETIIAG  165 (327)
T ss_pred             ccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC----------------CEEEEe
Confidence            99999887664     3567999998733       3344444444333333332222                234566


Q ss_pred             CCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccC
Q 011126          361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV  439 (493)
Q Consensus       361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~  439 (493)
                      ..++.+..|+.+...   +.+.....|...|++|.++|+. +++|++.|.+-++||+.+-.+++++...-+|++.+++| 
T Consensus       166 he~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP-  241 (327)
T KOG0643|consen  166 HEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISP-  241 (327)
T ss_pred             cCCCcEEEEEcccCc---eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceeccc-
Confidence            777778777776432   1244456689999999999999 99999999999999999999999999999999999999 


Q ss_pred             CCCEEEEEe-CCC-eEEEEeCCCCe-------------EEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          440 DDNYFISGS-IDG-KVRIWEVRRCQ-------------VVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       440 d~~~l~sgs-~Dg-~V~IWdl~~~~-------------~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ..+.++.|+ .+. -|.--+.+.++             +-...+|-++|++|+|+|+|+..++|+-|+
T Consensus       242 ~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG  309 (327)
T KOG0643|consen  242 LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG  309 (327)
T ss_pred             ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc
Confidence            555555554 432 13333333332             124678999999999999999999998764

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=1.3e-18  Score=176.75  Aligned_cols=255  Identities=17%  Similarity=0.298  Sum_probs=186.5

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+.+|..+++.+.|...|..||+|+.|+.|.|||+-.....+       .+.||+..|+.+.|..+.++|++.+.|+.|+
T Consensus       102 tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~-------rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK  174 (888)
T KOG0306|consen  102 TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF-------RLRGHKDSITQALFLNGDSFLVSVSKDSMIK  174 (888)
T ss_pred             eecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE-------EeecchHHHhHHhccCCCeEEEEeccCceEE
Confidence            456677888889999999999999999999999987544322       4789999999999998888999999999999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEee------CCCCceeeeec--cCccc--------------------cceee----
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTI------NHLSQLIPIDV--DKEKI--------------------DKTKS----  357 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~--------------------~~~~~----  357 (493)
                      +||+.+..+..+.-.+....+.+.+..      .....+..+..  ..+..                    .....    
T Consensus       175 ~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~  254 (888)
T KOG0306|consen  175 FWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDF  254 (888)
T ss_pred             EEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecC
Confidence            999999988887776666555544332      11111111111  00000                    00000    


Q ss_pred             -------------------------------------------------------------------------e--ecCC
Q 011126          358 -------------------------------------------------------------------------L--RKSS  362 (493)
Q Consensus       358 -------------------------------------------------------------------------~--~~s~  362 (493)
                                                                                               .  ....
T Consensus       255 s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~  334 (888)
T KOG0306|consen  255 SDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGT  334 (888)
T ss_pred             cccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCc
Confidence                                                                                     0  0000


Q ss_pred             CceEEEcCCCceee---c--cc--------ceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCC
Q 011126          363 DLTCVVLPPKVFRL---L--EK--------PLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNN  429 (493)
Q Consensus       363 ~~~~~~~~~~~~~~---~--~~--------~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~  429 (493)
                      ...++.........   .  .+        ....+.||...|..++++.+..++..+..+.|+||+..+.+|++++... 
T Consensus       335 ~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-  413 (888)
T KOG0306|consen  335 ENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-  413 (888)
T ss_pred             ceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-
Confidence            00111111100000   0  00        1145678999999999999985555555688999999999999999765 


Q ss_pred             cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       430 ~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      ++.+..|-| .++++++|...|.+.+||+....++. ...|.+.|++++.+||++.+++|+.|++
T Consensus       414 y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt  477 (888)
T KOG0306|consen  414 YILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT  477 (888)
T ss_pred             cEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE
Confidence            999999999 99999999999999999999988874 6789999999999999999999999975

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=4.8e-19  Score=177.41  Aligned_cols=217  Identities=20%  Similarity=0.338  Sum_probs=173.5

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEE-ccCCCEEEEEECCC
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF-SLDGQYLASGGEDG  306 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~Lasgs~Dg  306 (493)
                      +.++..|.+=++.+....+++.|++++.|-+|++|+.....     ..+..++..|++-|.|+++ .++..++|+||-|+
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~  140 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR  140 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCc
Confidence            45666777777888888899999999999999999987553     1244467889999999999 77888999999999


Q ss_pred             cEEEEecCCCee--eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          307 TVRVWKVIEHER--LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       307 ~V~iWdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                      .|.+||+.++..  +..+....    ...........++.++.....   ...+.++....+.+|+++..    +.+..+
T Consensus       141 ~IflWDin~~~~~l~~s~n~~t----~~sl~sG~k~siYSLA~N~t~---t~ivsGgtek~lr~wDprt~----~kimkL  209 (735)
T KOG0308|consen  141 KIFLWDINTGTATLVASFNNVT----VNSLGSGPKDSIYSLAMNQTG---TIIVSGGTEKDLRLWDPRTC----KKIMKL  209 (735)
T ss_pred             cEEEEEccCcchhhhhhccccc----cccCCCCCccceeeeecCCcc---eEEEecCcccceEEeccccc----cceeee
Confidence            999999998733  22222111    111111233344444444333   55667888888999988763    447778


Q ss_pred             ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~  461 (493)
                      .||+..|.+|..+++| .+++++.||+|+|||+...+|+.++. |...|+++..+| +-.++++|+.||.|..-|+++.
T Consensus       210 rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  210 RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCc
Confidence            8999999999999999 99999999999999999999999997 999999999999 9999999999999999999984

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.81  E-value=3.1e-19  Score=173.73  Aligned_cols=235  Identities=19%  Similarity=0.279  Sum_probs=187.7

Q ss_pred             eecccccceeccCCCeEEeeecCCeEEEEECCCccccc--cccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSREL--SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW  311 (493)
                      |-..|-+++++...+++.+|++ |-|+|||+.......  +.+    .+..-..-|.+++..|||+.|++|++-.+|.||
T Consensus       418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqL----dcl~rdnyiRSckL~pdgrtLivGGeastlsiW  492 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQL----DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW  492 (705)
T ss_pred             cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccc----cccCcccceeeeEecCCCceEEeccccceeeee
Confidence            3344445888999999999976 679999997653221  111    123345679999999999999999999999999


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      |+.................|.++..+....              ..+....++.+.+|+....    ..++.|.||...+
T Consensus       493 DLAapTprikaeltssapaCyALa~spDak--------------vcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGa  554 (705)
T KOG0639|consen  493 DLAAPTPRIKAELTSSAPACYALAISPDAK--------------VCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGA  554 (705)
T ss_pred             eccCCCcchhhhcCCcchhhhhhhcCCccc--------------eeeeeccCCcEEEEEcccc----eeeecccCCCCCc
Confidence            998766544333333334444433333222              2245567788899988653    3478899999999


Q ss_pred             eEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCC
Q 011126          392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR  470 (493)
Q Consensus       392 ~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~  470 (493)
                      .||..+++| .|.||+.|.+||.||++.++.+........|.++..+| .+.+|+.|-.++.|.|-.....+...+.-|.
T Consensus       555 scIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~kyqlhlhe  633 (705)
T KOG0639|consen  555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLHLHE  633 (705)
T ss_pred             eeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCC-CccceeeecccCcEEEEecCCccceeecccc
Confidence            999999999 99999999999999999999988888889999999999 9999999999999999999888888889999


Q ss_pred             CCeEEEEEccCCCEEEEeecCC
Q 011126          471 EIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       471 ~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ..|.++.|.+.|+++++.|.|.
T Consensus       634 ScVLSlKFa~cGkwfvStGkDn  655 (705)
T KOG0639|consen  634 SCVLSLKFAYCGKWFVSTGKDN  655 (705)
T ss_pred             cEEEEEEecccCceeeecCchh
Confidence            9999999999999999988763

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.81  E-value=7e-19  Score=177.46  Aligned_cols=248  Identities=19%  Similarity=0.266  Sum_probs=192.5

Q ss_pred             ccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc---CCCEEEE
Q 011126          225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQYLAS  301 (493)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~~Las  301 (493)
                      .+.....-.....+.+++++|+|++||+|..-|.++||++.....       .-.+.+|...|.|+.|+.   ..++||+
T Consensus       449 dka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-------~~~~eAHesEilcLeyS~p~~~~kLLAS  521 (1080)
T KOG1408|consen  449 DKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-------TCFMEAHESEILCLEYSFPVLTNKLLAS  521 (1080)
T ss_pred             cccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-------hhheecccceeEEEeecCchhhhHhhhh
Confidence            333334444556677899999999999999999999999874432       224689999999999986   3568999


Q ss_pred             EECCCcEEEEecCCC-eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126          302 GGEDGTVRVWKVIEH-ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (493)
Q Consensus       302 gs~Dg~V~iWdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (493)
                      ++.|..|+|+|+... ..++++..|...+..+.|..++.+.-+ +....++...+....+..++.+..-           
T Consensus       522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M-iscGADksimFr~~qk~~~g~~f~r-----------  589 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM-ISCGADKSIMFRVNQKASSGRLFPR-----------  589 (1080)
T ss_pred             ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE-EeccCchhhheehhccccCceeccc-----------
Confidence            999999999999644 456778888888888888877643222 1122222222222223333222111           


Q ss_pred             eEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEccCCCCEEEEEeCCCeEEE
Q 011126          381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (493)
Q Consensus       381 ~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I  455 (493)
                       ++-......+++++..|+- ++++++.|+.|+||++.+++..+.|+    |.+....+...| .+.|||+.+.|.++.+
T Consensus       590 -~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~  667 (1080)
T KOG1408|consen  590 -HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCF  667 (1080)
T ss_pred             -cccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEE
Confidence             1111124578899999987 99999999999999999999999996    777888999999 9999999999999999


Q ss_pred             EeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          456 WEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       456 Wdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      +|..+++++ ...+|...|+.+.|.+|-+.|++.+.|.|
T Consensus       668 ~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC  706 (1080)
T KOG1408|consen  668 VDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC  706 (1080)
T ss_pred             EEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence            999999988 58999999999999999999999999987

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.81  E-value=2.3e-20  Score=172.72  Aligned_cols=158  Identities=27%  Similarity=0.502  Sum_probs=140.9

Q ss_pred             ecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeec
Q 011126          281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (493)
Q Consensus       281 ~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (493)
                      .+.++-+-|..|+|||+||++|+.||.|.+|+..+|+..+.++....                                 
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------------------------------  256 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------------------------------  256 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------------------------------
Confidence            35567788999999999999999999999999999987655543211                                 


Q ss_pred             CCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEc
Q 011126          361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFN  437 (493)
Q Consensus       361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fs  437 (493)
                                           ..|--|..+|.|+.|+.+. .|++|+.||.|++|.+.++.|++.|.  |...|+|+.|+
T Consensus       257 ---------------------d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FS  315 (508)
T KOG0275|consen  257 ---------------------DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFS  315 (508)
T ss_pred             ---------------------cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEc
Confidence                                 1233468899999999998 99999999999999999999999996  99999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          438 PVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       438 p~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      . |+..+++++.|.+|||--++.|+.+ .+.+|..-|+.+.|++||..++++++|.+
T Consensus       316 r-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt  371 (508)
T KOG0275|consen  316 R-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT  371 (508)
T ss_pred             c-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence            9 9999999999999999999999988 58999999999999999999999998864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=4.8e-18  Score=157.68  Aligned_cols=195  Identities=25%  Similarity=0.368  Sum_probs=151.2

Q ss_pred             cceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccce
Q 011126          276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (493)
Q Consensus       276 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (493)
                      ..+.+..-.+.|++|.|+++|.+|++++.|.+|+|||..+++++..+....-.+..+.|.......+......       
T Consensus         6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~-------   78 (311)
T KOG1446|consen    6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKE-------   78 (311)
T ss_pred             cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCC-------
Confidence            3445556678899999999999999999999999999999999999998887777777766654433322211       


Q ss_pred             eeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEE
Q 011126          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV  434 (493)
Q Consensus       356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v  434 (493)
                             +..+......    ..+.++-|.||...|..|+.+|-+ .+++++.|++|++||++..+|...+.... -..+
T Consensus        79 -------d~tIryLsl~----dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~  146 (311)
T KOG1446|consen   79 -------DDTIRYLSLH----DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIA  146 (311)
T ss_pred             -------CCceEEEEee----cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-Ccce
Confidence                   1112211111    135688899999999999999988 99999999999999999999988776333 3358


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEeCCCCe---EEE--ec-CCCCCeEEEEEccCCCEEEEeec
Q 011126          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQ---VVD--YT-DIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~V~IWdl~~~~---~~~--~~-~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      +|.| .|-+||++...+.|++||++.-.   ...  +. ......+.|.|+|||++++.+..
T Consensus       147 AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~  207 (311)
T KOG1446|consen  147 AFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN  207 (311)
T ss_pred             eECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC
Confidence            9999 99999999988899999998532   222  22 44567899999999999887764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=5.3e-18  Score=157.02  Aligned_cols=224  Identities=21%  Similarity=0.305  Sum_probs=172.9

Q ss_pred             eEEeeecCCeEEEEECCCcccccc-----ccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeee
Q 011126          249 ELTLGQRMRRVRVHPVKKQSRELS-----SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD  323 (493)
Q Consensus       249 ~lasgs~dg~V~vwd~~~~~~~~~-----~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~  323 (493)
                      .|++|+....|.-+++........     .+.+.-.+.+|.++|++++.+  +.|+|+|+.|-+|+|||+.+...+..+-
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence            367788877777777665441111     112222468999999999995  9999999999999999999999888888


Q ss_pred             ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE
Q 011126          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL  402 (493)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l  402 (493)
                      .+...++++.|.+....              ...+.++.++.+.+|+.+.|..    +..+++|.+.|+.|+.+|.+ +-
T Consensus        81 ~HagsitaL~F~~~~S~--------------shLlS~sdDG~i~iw~~~~W~~----~~slK~H~~~Vt~lsiHPS~KLA  142 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSK--------------SHLLSGSDDGHIIIWRVGSWEL----LKSLKAHKGQVTDLSIHPSGKLA  142 (362)
T ss_pred             ccccceEEEEecCCcch--------------hheeeecCCCcEEEEEcCCeEE----eeeecccccccceeEecCCCceE
Confidence            88877777776554321              1456788999999999999855    88999999999999999999 77


Q ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccC--------------------------------------CCCEE
Q 011126          403 LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV--------------------------------------DDNYF  444 (493)
Q Consensus       403 ~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~--------------------------------------d~~~l  444 (493)
                      ++.+.|+.+++|++-.++.-.........+.|.|+|.                                      ++.+|
T Consensus       143 LsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L  222 (362)
T KOG0294|consen  143 LSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSEL  222 (362)
T ss_pred             EEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceE
Confidence            8899999999999876654333332222222333331                                      67889


Q ss_pred             EEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEE--ccCCCEEEEeecCC
Q 011126          445 ISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY--CPDGKVRQNSACNF  492 (493)
Q Consensus       445 ~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~--spdG~~l~s~s~d~  492 (493)
                      ++|+.|+.|++||..+..+. .+..|...|.++.+  .|++.+|+++++|+
T Consensus       223 ~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  223 LVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG  273 (362)
T ss_pred             EEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence            99999999999999987666 58899999999983  67899999999885

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.80  E-value=2.3e-19  Score=171.23  Aligned_cols=235  Identities=17%  Similarity=0.219  Sum_probs=189.8

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+.+|...++.+.|-++...|++|+.|..|++|++.....+     ...++.+..++|+.+.|.++++++++++.|+.++
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-----~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-----LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR  244 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh-----hhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence            35667778888999999999999999999999998765533     3346778889999999999999999999999999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      +|++...+...++..|...+.++.+...+..                .+.++.+..+..|+.........++     ...
T Consensus       245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~----------------vVsgs~DRtiK~WDl~k~~C~kt~l-----~~S  303 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR----------------VVSGSADRTIKLWDLQKAYCSKTVL-----PGS  303 (459)
T ss_pred             eeeccchhhhhhhcccccceeeehhhccccc----------------eeeccccchhhhhhhhhhheecccc-----ccc
Confidence            9999999999999998887777766444422                3466777777777765433222211     234


Q ss_pred             CEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe---
Q 011126          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY---  466 (493)
Q Consensus       390 ~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~---  466 (493)
                      .+.+|..++. .+++|-.|++||+||+++..+.......+.|+++..++ ++.-|.+++.|.++.+.|+++.++...   
T Consensus       304 ~cnDI~~~~~-~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA  381 (459)
T KOG0288|consen  304 QCNDIVCSIS-DVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSA  381 (459)
T ss_pred             cccceEecce-eeeecccccceEEEeccCCceeeEeecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeec
Confidence            5566666522 78899999999999999999999999888999999999 999999999999999999999887642   


Q ss_pred             --cCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          467 --TDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       467 --~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                        .......+.++|+|++.|+++|++|.
T Consensus       382 ~g~k~asDwtrvvfSpd~~YvaAGS~dg  409 (459)
T KOG0288|consen  382 EGFKCASDWTRVVFSPDGSYVAAGSADG  409 (459)
T ss_pred             cccccccccceeEECCCCceeeeccCCC
Confidence              12234589999999999999999985

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=1.2e-18  Score=161.03  Aligned_cols=236  Identities=15%  Similarity=0.191  Sum_probs=187.5

Q ss_pred             ccCceeeeecccccceeccCCCeEEeeecCCeEEEEEC------CCccc--------cc---------------c----c
Q 011126          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPV------KKQSR--------EL---------------S----S  273 (493)
Q Consensus       227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~------~~~~~--------~~---------------~----~  273 (493)
                      .+..+++|...+++++|++.+.++++++.|++..||.+      .+...        +.               .    .
T Consensus       182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti  261 (481)
T KOG0300|consen  182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI  261 (481)
T ss_pred             ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence            45568899999999999999999999999999999973      11000        00               0    0


Q ss_pred             cccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccc
Q 011126          274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID  353 (493)
Q Consensus       274 ~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (493)
                      ..+.-.+.+|.+.|.+..|-..|+.+++++.|.+..+||+.++..+..+..+......+...+.                
T Consensus       262 RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt----------------  325 (481)
T KOG0300|consen  262 RVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT----------------  325 (481)
T ss_pred             eeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc----------------
Confidence            1112357899999999999999999999999999999999999999888877665443322211                


Q ss_pred             ceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCC-CcEEEEecCCCcEE
Q 011126          354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVT  432 (493)
Q Consensus       354 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~-~~~~~~~~h~~~V~  432 (493)
                      ....+..+.+.+..+|+.+.   .-..+..|.||...|+++.|..+..+++|+.|.+|+|||++. ..++.++....+++
T Consensus       326 QrLVvTsSrDtTFRLWDFRe---aI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~N  402 (481)
T KOG0300|consen  326 QRLVVTSSRDTTFRLWDFRE---AIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPAN  402 (481)
T ss_pred             ceEEEEeccCceeEeccchh---hcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccc
Confidence            12234566777788887652   223467899999999999999988999999999999999986 45788999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-----ecCCCCCeEEEEEccCC
Q 011126          433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-----YTDIREIVSAVCYCPDG  482 (493)
Q Consensus       433 ~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-----~~~~~~~I~sv~~spdG  482 (493)
                      .++.+. .+.+|+.--.+..|++||+...++..     -.+|..+|++++|..+.
T Consensus       403 Rvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh  456 (481)
T KOG0300|consen  403 RVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH  456 (481)
T ss_pred             eeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC
Confidence            999998 77788888888999999999877654     35788999999997654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.80  E-value=4.2e-18  Score=171.91  Aligned_cols=215  Identities=20%  Similarity=0.304  Sum_probs=169.0

Q ss_pred             ceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeee
Q 011126          241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (493)
Q Consensus       241 ~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~  319 (493)
                      +++.+ ++-.+++|+.|+.|.+|......       +..++.+|+..|.++....++. |+||+.|.+++||.+.  ++.
T Consensus        64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~-------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~  133 (745)
T KOG0301|consen   64 ICYAESDKGRLVVGGMDTTIIVFKLSQAE-------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELV  133 (745)
T ss_pred             ceeccccCcceEeecccceEEEEecCCCC-------chhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhh
Confidence            55554 44569999999999999876433       4446899999999999888887 9999999999999764  344


Q ss_pred             eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (493)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (493)
                      ..+..|...++.+...+.                 ...++++.|..+.+|..      .+.+.+|.||..-|..+++-++
T Consensus       134 ~~l~gH~asVWAv~~l~e-----------------~~~vTgsaDKtIklWk~------~~~l~tf~gHtD~VRgL~vl~~  190 (745)
T KOG0301|consen  134 YSLQGHTASVWAVASLPE-----------------NTYVTGSADKTIKLWKG------GTLLKTFSGHTDCVRGLAVLDD  190 (745)
T ss_pred             cccCCcchheeeeeecCC-----------------CcEEeccCcceeeeccC------CchhhhhccchhheeeeEEecC
Confidence            445555555554433221                 24578889999999876      3457889999999999999999


Q ss_pred             CeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC-CeEEEEE
Q 011126          400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE-IVSAVCY  478 (493)
Q Consensus       400 g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~-~I~sv~~  478 (493)
                      +.+++|+.||.|++|++.....+..+.|++.|.++...+ ++..+++++.|++++||+..  .+++...++. .|+++++
T Consensus       191 ~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~  267 (745)
T KOG0301|consen  191 SHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV  267 (745)
T ss_pred             CCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecC-CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence            899999999999999995444445556999999999777 78999999999999999987  5555455554 8999999


Q ss_pred             ccCCCEEEEeecCC
Q 011126          479 CPDGKVRQNSACNF  492 (493)
Q Consensus       479 spdG~~l~s~s~d~  492 (493)
                      -++|.+++ |++|+
T Consensus       268 L~NgDIvv-g~SDG  280 (745)
T KOG0301|consen  268 LLNGDIVV-GGSDG  280 (745)
T ss_pred             eeCCCEEE-eccCc
Confidence            99998764 44443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.80  E-value=1.5e-18  Score=164.01  Aligned_cols=197  Identities=21%  Similarity=0.337  Sum_probs=149.8

Q ss_pred             ecccccceecc--CCCeEEeeecCCeEEEEECCCccccc---------cccccceeeecccCCEEEEEEccC-CCEEEEE
Q 011126          235 IDRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSREL---------SSLYTGQEFLAHEGSILTMKFSLD-GQYLASG  302 (493)
Q Consensus       235 ~~~~~~~~fsp--~g~~lasgs~dg~V~vwd~~~~~~~~---------~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasg  302 (493)
                      .+.++.+..++  +..+.|+-+..|+|+||++......+         ....+..++.+|.+.=+.|+|||- ...|+||
T Consensus       151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG  230 (440)
T KOG0302|consen  151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG  230 (440)
T ss_pred             ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence            33444444444  44567777889999999986533221         223344567899999999999992 2258888


Q ss_pred             ECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126          303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (493)
Q Consensus       303 s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (493)
                      .--+.|++|...++.-.                                                        ..   ..
T Consensus       231 Dc~~~I~lw~~~~g~W~--------------------------------------------------------vd---~~  251 (440)
T KOG0302|consen  231 DCVKGIHLWEPSTGSWK--------------------------------------------------------VD---QR  251 (440)
T ss_pred             ccccceEeeeeccCcee--------------------------------------------------------ec---Cc
Confidence            87888999988665311                                                        00   12


Q ss_pred             EEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCC---cEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126          383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID---RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (493)
Q Consensus       383 ~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~---~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd  457 (493)
                      .|.+|+..|-+|+|||..  .|++|+-|++|+|||++.+   .++.+-.|.+.|+-|.|+. +..+||+|+.||+++|||
T Consensus       252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwD  330 (440)
T KOG0302|consen  252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWD  330 (440)
T ss_pred             cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEE
Confidence            256799999999999975  9999999999999999988   5666666999999999998 777999999999999999


Q ss_pred             CCCC---eEE-EecCCCCCeEEEEEccCCC-EEEEeecC
Q 011126          458 VRRC---QVV-DYTDIREIVSAVCYCPDGK-VRQNSACN  491 (493)
Q Consensus       458 l~~~---~~~-~~~~~~~~I~sv~~spdG~-~l~s~s~d  491 (493)
                      ++.-   +++ .+..|+.+|++|.|+|... .|+++|.|
T Consensus       331 LR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D  369 (440)
T KOG0302|consen  331 LRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED  369 (440)
T ss_pred             hhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence            9964   344 6889999999999999754 55555544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=9.9e-18  Score=155.09  Aligned_cols=239  Identities=15%  Similarity=0.235  Sum_probs=170.0

Q ss_pred             ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~  318 (493)
                      .++.|++.|.+||+|..+|+|.|||+.+.       ...+.+.+|..+|.+++||+||++|+|++.|..|.+||+..|.+
T Consensus        27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~   99 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGCANGRVVIYDFDTF-------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP   99 (405)
T ss_pred             ceEEeccCcceeeeeccCCcEEEEEcccc-------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc
Confidence            45899999999999999999999998743       34556889999999999999999999999999999999999998


Q ss_pred             eeeeeccCCCCceEEEeeCCCCceeeeeccCcc-------------------------------ccceeeeecCCCceEE
Q 011126          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK-------------------------------IDKTKSLRKSSDLTCV  367 (493)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~s~~~~~~  367 (493)
                      ++.+..... +....+.+...+..+..-+....                               ......+.+...+.+.
T Consensus       100 l~rirf~sp-v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll  178 (405)
T KOG1273|consen  100 LKRIRFDSP-VWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL  178 (405)
T ss_pred             eeEEEccCc-cceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence            888776533 33333333333322221111100                               0112234555666666


Q ss_pred             EcCCCceeecccceEEEecCC-CCEeEEEEeCCC-eEEEEeCCCeEEEEECCC-------CcEE--EEec---CCCcEEE
Q 011126          368 VLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-------DRCL--RVFS---HNNYVTS  433 (493)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~-------~~~~--~~~~---h~~~V~~  433 (493)
                      +++...+.    .+..++-.. ..|..|.++..| .|+.-+.|..||.|+++.       +.+-  +.+.   ....-.+
T Consensus       179 v~~a~t~e----~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~  254 (405)
T KOG1273|consen  179 VYDAETLE----CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK  254 (405)
T ss_pred             EEecchhe----eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence            66555443    344444444 678899999999 999999999999999862       1111  1221   3344567


Q ss_pred             EEEccCCCCEEEEEeCC-CeEEEEeCCCCeEEE-ecCCC-CCeEEEEEccCCCEEEEeec
Q 011126          434 VAFNPVDDNYFISGSID-GKVRIWEVRRCQVVD-YTDIR-EIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       434 v~fsp~d~~~l~sgs~D-g~V~IWdl~~~~~~~-~~~~~-~~I~sv~~spdG~~l~s~s~  490 (493)
                      ++|+. +|.|++.|+.. ..++||.-..|.+++ +.+.+ .....+.|+|-...+++-.+
T Consensus       255 ccfs~-dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~s  313 (405)
T KOG1273|consen  255 CCFSG-DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIAS  313 (405)
T ss_pred             eeecC-CccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccC
Confidence            88998 99999888753 579999999999887 44554 56778889998777766543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=1.2e-17  Score=154.34  Aligned_cols=190  Identities=18%  Similarity=0.259  Sum_probs=138.7

Q ss_pred             eecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeee
Q 011126          280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR  359 (493)
Q Consensus       280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (493)
                      +..|..+|.||.+++....+++|+.|++|++||.........+....              .+.+++...     ...+.
T Consensus        90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k--------------kVy~~~v~g-----~~LvV  150 (323)
T KOG1036|consen   90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK--------------KVYCMDVSG-----NRLVV  150 (323)
T ss_pred             eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc--------------eEEEEeccC-----CEEEE
Confidence            56799999999999988899999999999999987643333332221              222222221     23345


Q ss_pred             cCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC----cEEEEec-C------
Q 011126          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID----RCLRVFS-H------  427 (493)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~----~~~~~~~-h------  427 (493)
                      +..+..+++|+.+......+  ..-..-.-.+.||++-|++ -++.++-||.|.+=.+...    .....|+ |      
T Consensus       151 g~~~r~v~iyDLRn~~~~~q--~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~  228 (323)
T KOG1036|consen  151 GTSDRKVLIYDLRNLDEPFQ--RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD  228 (323)
T ss_pred             eecCceEEEEEcccccchhh--hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC
Confidence            66777888888876554321  1112234578899999977 7888899999998766654    2222332 2      


Q ss_pred             ---CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          428 ---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       428 ---~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                         --+|++|+|+| -...||||+.||.|.+||+...+.+ .+......|.+++|+.||..||++++-
T Consensus       229 ~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy  295 (323)
T KOG1036|consen  229 TEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY  295 (323)
T ss_pred             ceEEEEeceeEecc-ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence               23799999999 6889999999999999999988766 567777889999999999999999863

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=6.7e-18  Score=156.32  Aligned_cols=221  Identities=15%  Similarity=0.236  Sum_probs=161.8

Q ss_pred             ccCceeeeecccccceeccCCC--eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126          227 KLGAMARIIDRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (493)
Q Consensus       227 ~~~~~~~~~~~~~~~~fsp~g~--~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (493)
                      .++.+..|.+.++++.|.+.-.  .|++|+.||.|.+|+.+       .+.....+++|.+.|+.|+.+|.|++-++.+.
T Consensus        75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-------~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~  147 (362)
T KOG0294|consen   75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-------SWELLKSLKAHKGQVTDLSIHPSGKLALSVGG  147 (362)
T ss_pred             hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC-------CeEEeeeecccccccceeEecCCCceEEEEcC
Confidence            4567777888899999988876  89999999999999987       44566789999999999999999999999999


Q ss_pred             CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                      |+.+++||+.+|+.....+...... .+.|.+.+...++..                 ...+-+|...     ...+...
T Consensus       148 D~~lr~WNLV~Gr~a~v~~L~~~at-~v~w~~~Gd~F~v~~-----------------~~~i~i~q~d-----~A~v~~~  204 (362)
T KOG0294|consen  148 DQVLRTWNLVRGRVAFVLNLKNKAT-LVSWSPQGDHFVVSG-----------------RNKIDIYQLD-----NASVFRE  204 (362)
T ss_pred             CceeeeehhhcCccceeeccCCcce-eeEEcCCCCEEEEEe-----------------ccEEEEEecc-----cHhHhhh
Confidence            9999999999988766555443322 244443332111110                 0111111111     1111111


Q ss_pred             ecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEE--ccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126          385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF--NPVDDNYFISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~f--sp~d~~~l~sgs~Dg~V~IWdl~~~  461 (493)
                      ......+.++.|-..+.|++|..|+.|++||.....++..|. |.+.|..+.+  +| ++.||+|++.||.|+|||++..
T Consensus       205 i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  205 IENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNP-EHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             hhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecC-CceEEEEeccCceEEEEEcccc
Confidence            112356788888777799999999999999999988888875 9999999985  45 7789999999999999999866


Q ss_pred             -----eEEEecCCCCCeEEEEE
Q 011126          462 -----QVVDYTDIREIVSAVCY  478 (493)
Q Consensus       462 -----~~~~~~~~~~~I~sv~~  478 (493)
                           +++...+....++++..
T Consensus       284 ~k~~~~~l~e~n~~~RltCl~~  305 (362)
T KOG0294|consen  284 TKKRPTLLAELNTNVRLTCLRV  305 (362)
T ss_pred             ccCCcceeEEeecCCccceeee
Confidence                 34444555666776654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.78  E-value=5.5e-18  Score=155.08  Aligned_cols=265  Identities=18%  Similarity=0.279  Sum_probs=187.0

Q ss_pred             cCCcceeeeecCCCceeEEccCCCchhhhhccccccCC---CcccccccccCCCCC---CccccccCCccccccccchhh
Q 011126          142 KDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGS---SSSFVQPLPSRQDEESRDLVD  215 (493)
Q Consensus       142 ~~~~~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~---s~~~v~~l~~~~~~~~~~~~~  215 (493)
                      ++|.++.|+--+.|.++..+..+.  +.++  |+.+.+   ++.|-...|..+-++   -...||+++..-...      
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h--~agE--vw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S------  107 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFH--HAGE--VWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS------  107 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhc--CCcc--eehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc------
Confidence            469999999999999888877665  4444  777776   555555555533332   122277765432110      


Q ss_pred             hhhhhccccccccCcee-eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc
Q 011126          216 AKRKVKRGWLKKLGAMA-RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL  294 (493)
Q Consensus       216 ~~~~~k~~w~~~~~~~~-~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp  294 (493)
                           ...-+.....+. .+..++.|+.|.|++..+|+-. +..|.+|++.........+... .-..|+...++-+|+|
T Consensus       108 -----~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss-~s~e~~~~ftsg~Wsp  180 (370)
T KOG1007|consen  108 -----NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSS-ESAEMRHSFTSGAWSP  180 (370)
T ss_pred             -----ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccc-ccccccceecccccCC
Confidence                 011111222222 3345777899999999988865 8899999998766532222221 1233777888999999


Q ss_pred             --CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCC
Q 011126          295 --DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK  372 (493)
Q Consensus       295 --dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  372 (493)
                        +|+.+++. .|++++.||+++.++...+                                                  
T Consensus       181 HHdgnqv~tt-~d~tl~~~D~RT~~~~~sI--------------------------------------------------  209 (370)
T KOG1007|consen  181 HHDGNQVATT-SDSTLQFWDLRTMKKNNSI--------------------------------------------------  209 (370)
T ss_pred             CCccceEEEe-CCCcEEEEEccchhhhcch--------------------------------------------------
Confidence              88888876 4789999999876542221                                                  


Q ss_pred             ceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC-CcEEEEec-CCCcEEEEEEccCCCCEEEEEe
Q 011126          373 VFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGS  448 (493)
Q Consensus       373 ~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs  448 (493)
                                 -..|...|.++.|+|+.  +|++|+.|+.|+|||.+. ..++..+. |...|++|.|+|...++|++|+
T Consensus       210 -----------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~  278 (370)
T KOG1007|consen  210 -----------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG  278 (370)
T ss_pred             -----------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC
Confidence                       13578889999999987  999999999999999985 44666665 9999999999999999999999


Q ss_pred             CCCeEEEEeCCC------------------------------CeEEEecCCCCCeEEEEEccCCCEE
Q 011126          449 IDGKVRIWEVRR------------------------------CQVVDYTDIREIVSAVCYCPDGKVR  485 (493)
Q Consensus       449 ~Dg~V~IWdl~~------------------------------~~~~~~~~~~~~I~sv~~spdG~~l  485 (493)
                      .|..|.+|....                              +++..+..|.+.|.+++|+.-..++
T Consensus       279 SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi  345 (370)
T KOG1007|consen  279 SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI  345 (370)
T ss_pred             CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence            999999997631                              2223466788899999998654443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.78  E-value=1.2e-17  Score=163.39  Aligned_cols=280  Identities=13%  Similarity=0.135  Sum_probs=187.6

Q ss_pred             CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeEEeeecCCeE
Q 011126          180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV  259 (493)
Q Consensus       180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V  259 (493)
                      |-.+....++-++.     .|.+......-             ..++.+..  |-...++++.|++.|..|++.+.....
T Consensus       179 GaR~~sGs~Dy~v~-----~wDf~gMdas~-------------~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  179 GARFVSGSLDYTVK-----FWDFQGMDASM-------------RSFRQLQP--CETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             CceeeeccccceEE-----EEecccccccc-------------hhhhccCc--ccccccceeeecCCCCeEEEEecCcce
Confidence            66677777776666     56554332110             00222222  233456779999999999999999999


Q ss_pred             EEEECCCcccc-cc--ccccc--eeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCCCee-eeeeeccCCCCceE
Q 011126          260 RVHPVKKQSRE-LS--SLYTG--QEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHER-LDGFDVQDTDPSCL  332 (493)
Q Consensus       260 ~vwd~~~~~~~-~~--~~~~~--~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~~-~~~~~~~~~~~~~~  332 (493)
                      +|+|....... +.  ..|..  ..-+||...++|.+|+|+ ...++|++.||++||||+...+. ...++.......  
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~--  316 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK--  316 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc--
Confidence            99997654321 11  00000  123789999999999995 45889999999999999976542 333332211110  


Q ss_pred             EEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC--CEeEEEEeCCC-eEEEEeCCC
Q 011126          333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EVLDLSWSKNG-FLLSSSADK  409 (493)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~g-~l~sgs~Dg  409 (493)
                            .-.+..+.++...   ..+..+..++.+-+|+...+... ...+.-..|..  .|++|+||++| +|++-+.|+
T Consensus       317 ------Rv~~tsC~~nrdg---~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~  386 (641)
T KOG0772|consen  317 ------RVPVTSCAWNRDG---KLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD  386 (641)
T ss_pred             ------ccCceeeecCCCc---chhhhcccCCceeeeecCCcccc-cceEeeeccCCCCceeEEEeccccchhhhccCCC
Confidence                  0111122222222   22456778888888886443332 22333456777  99999999999 999999999


Q ss_pred             eEEEEECCC-CcEEEEec---CCCcEEEEEEccCCCCEEEEEeC------CCeEEEEeCCCCeEEE-ecCCCCCeEEEEE
Q 011126          410 TVRLWQVGI-DRCLRVFS---HNNYVTSVAFNPVDDNYFISGSI------DGKVRIWEVRRCQVVD-YTDIREIVSAVCY  478 (493)
Q Consensus       410 ~V~lWd~~~-~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~------Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~  478 (493)
                      +++|||++. .+++.++.   ..-+-+.++|+| +.++|++|..      -|++.+||..+.+.+. +.-....|..+.|
T Consensus       387 tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~W  465 (641)
T KOG0772|consen  387 TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLW  465 (641)
T ss_pred             ceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEee
Confidence            999999985 45665553   345567899999 9999999865      4789999999988775 4444667999999


Q ss_pred             ccCCCEEEEeecCC
Q 011126          479 CPDGKVRQNSACNF  492 (493)
Q Consensus       479 spdG~~l~s~s~d~  492 (493)
                      +|-=+.|.+|+.|+
T Consensus       466 hpkLNQi~~gsgdG  479 (641)
T KOG0772|consen  466 HPKLNQIFAGSGDG  479 (641)
T ss_pred             cchhhheeeecCCC
Confidence            99877666766664

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.78  E-value=6.9e-18  Score=170.33  Aligned_cols=229  Identities=21%  Similarity=0.292  Sum_probs=181.6

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEE-EEEcc-CCCEEEEEECCCcE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-MKFSL-DGQYLASGGEDGTV  308 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fsp-dg~~Lasgs~Dg~V  308 (493)
                      +.+|...+..+++. ++..++++++||++++|.-.....     .....+++|.+-|.. +++-+ ++..|++|+.|++|
T Consensus        10 l~gH~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~~-----l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQY-----LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             eccCccchheeEec-CCeEEeecCCCCceeeeeccCccc-----ccceecccCcceeeccceeccccCcceEeecccceE
Confidence            33444444444443 444899999999999998754332     122357789998888 88876 55679999999999


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      .+|.+.....+..++.|...+.++......                 ..++++-|.+..+|....      ....+.+|.
T Consensus        84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-----------------~~iSgSWD~TakvW~~~~------l~~~l~gH~  140 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-----------------TLISGSWDSTAKVWRIGE------LVYSLQGHT  140 (745)
T ss_pred             EEEecCCCCchhhhhccccceeeeecCCcC-----------------ceEecccccceEEecchh------hhcccCCcc
Confidence            999999999999998887766554421111                 145677788888887643      345589999


Q ss_pred             CCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 011126          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT  467 (493)
Q Consensus       389 ~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~  467 (493)
                      ..|.+++.-|.+.++||+.|++|++|.-  ++++++|. |.+.|..+++-|  +..|++++.||.|++|++....+....
T Consensus       141 asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~ge~l~~~~  216 (745)
T KOG0301|consen  141 ASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDGEVLLEMH  216 (745)
T ss_pred             hheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEec--CCCeEeecCCceEEEEeccCceeeeee
Confidence            9999999999999999999999999985  77888886 999999999987  456899999999999999666666899


Q ss_pred             CCCCCeEEEEEccCCCEEEEeecCC
Q 011126          468 DIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       468 ~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +|..-|.++++.+++..+++.|-|.
T Consensus       217 ghtn~vYsis~~~~~~~Ivs~gEDr  241 (745)
T KOG0301|consen  217 GHTNFVYSISMALSDGLIVSTGEDR  241 (745)
T ss_pred             ccceEEEEEEecCCCCeEEEecCCc
Confidence            9999999999888888999888764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=3.7e-18  Score=152.90  Aligned_cols=252  Identities=15%  Similarity=0.130  Sum_probs=180.6

Q ss_pred             CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceecc--CCCeEEeeecCC
Q 011126          180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKP--GDHELTLGQRMR  257 (493)
Q Consensus       180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp--~g~~lasgs~dg  257 (493)
                      |+.|+.+.-++++.     |-+.-.                 ..-.+.+..+.+|...+..++|..  .|.+||+++.||
T Consensus        23 gkrlATcsSD~tVk-----If~v~~-----------------n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg   80 (299)
T KOG1332|consen   23 GKRLATCSSDGTVK-----IFEVRN-----------------NGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDG   80 (299)
T ss_pred             cceeeeecCCccEE-----EEEEcC-----------------CCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCc
Confidence            77888887776665     222111                 111345567888888888888865  799999999999


Q ss_pred             eEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcEEEEecCCC---eeeeeeeccCCCCceE
Q 011126          258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEH---ERLDGFDVQDTDPSCL  332 (493)
Q Consensus       258 ~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V~iWdl~~~---~~~~~~~~~~~~~~~~  332 (493)
                      .|.||....+..     ....+...|...|++++|.|  .|-.|++++.||.|.|.++...   ...+....|...+..+
T Consensus        81 kVIiWke~~g~w-----~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV  155 (299)
T KOG1332|consen   81 KVIIWKEENGRW-----TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV  155 (299)
T ss_pred             eEEEEecCCCch-----hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence            999999886642     23345788999999999999  4678999999999999998655   1233345566667777


Q ss_pred             EEeeCCCCceeeeeccCccc-cceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-----eEEEEe
Q 011126          333 YFTINHLSQLIPIDVDKEKI-DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-----FLLSSS  406 (493)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-----~l~sgs  406 (493)
                      .+++........   +.... ...++..+..|..+.+|....-.  -+.-+++.+|...|.+++|.|.-     .|++++
T Consensus       156 swapa~~~g~~~---~~~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S  230 (299)
T KOG1332|consen  156 SWAPASAPGSLV---DQGPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS  230 (299)
T ss_pred             eecCcCCCcccc---ccCcccccceeeccCCccceeeeecCCcc--hhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence            777664321111   11111 13456778888888888765431  12345589999999999999963     899999


Q ss_pred             CCCeEEEEECCCC--cEEEE-ec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC-CCeEE
Q 011126          407 ADKTVRLWQVGID--RCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVV  464 (493)
Q Consensus       407 ~Dg~V~lWd~~~~--~~~~~-~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~-~~~~~  464 (493)
                      .||+|.||..+..  .-..+ +. ....+..+.|++ .|++|+.++.|++|.+|.-. .|+..
T Consensus       231 qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlwke~~~Gkw~  292 (299)
T KOG1332|consen  231 QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLWKENVDGKWE  292 (299)
T ss_pred             CCCcEEEEEecCccCcccccccccCCcceEEEEEec-cccEEEEecCCcEEEEEEeCCCCcEE
Confidence            9999999987632  11111 11 567899999999 99999999999999999765 34443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.78  E-value=6e-18  Score=163.51  Aligned_cols=236  Identities=17%  Similarity=0.245  Sum_probs=159.0

Q ss_pred             eeeeecccccceeccCCC--eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCc
Q 011126          231 MARIIDRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGT  307 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~--~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~  307 (493)
                      +.-+..++.+++|||..+  ++|+|..-|+|-+||+....+.....   ..+..|.++|.+|.|+| +...+++.++||+
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---EEeccCCccccceEecCCChhheeeeccCce
Confidence            344567788899999875  88899999999999997444433332   24678999999999999 5568999999999


Q ss_pred             EEEEecCCCeeeeeeeccCCCCc--eEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          308 VRVWKVIEHERLDGFDVQDTDPS--CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      ||+-|+.....-..+........  .+.+.......+                .+..-+...+|+.+..   ......+.
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl----------------~~~~~G~f~~iD~R~~---~s~~~~~~  319 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL----------------FGDNVGNFNVIDLRTD---GSEYENLR  319 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCCCccEE----------------EeecccceEEEEeecC---Cccchhhh
Confidence            99999977643222222111111  111111111111                1111112233333221   12244456


Q ss_pred             cCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc-----EEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126          386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-----CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~-----~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl  458 (493)
                      -|...|..|+++|..  +|+|++.|++++|||++.-.     .+.++.|...|.++.|+| .+..|++.+.|..|+|||.
T Consensus       320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSP-s~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSP-SGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcC-CCCceEeeccCCceEEeec
Confidence            688899999999987  99999999999999997422     366677999999999999 4545999999999999998


Q ss_pred             C----CCeEEEecCCCC------CeEEEEEccCCCEEEEee
Q 011126          459 R----RCQVVDYTDIRE------IVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       459 ~----~~~~~~~~~~~~------~I~sv~~spdG~~l~s~s  489 (493)
                      .    .-.......|..      .+....|.|+-.++++|.
T Consensus       399 s~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~  439 (498)
T KOG4328|consen  399 SCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR  439 (498)
T ss_pred             ccccccCCccceeeccCcccccccchhheeCCCccEEEEec
Confidence            4    222222222221      244567999999988875

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=3.8e-17  Score=169.75  Aligned_cols=231  Identities=16%  Similarity=0.153  Sum_probs=173.9

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd  312 (493)
                      .|......++|.|+|.+|.+++.||.|++|+......+..      .+.-|...|.+++-.  +.+|++|+.+++|.+|.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~------ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~   82 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE------TIDISGELVSSIACY--SNHFLTGSEQNTVLRYK   82 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc------hhhccCceeEEEeec--ccceEEeeccceEEEee
Confidence            3455566799999999999999999999999875532211      233377788887764  55999999999999999


Q ss_pred             cCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (493)
Q Consensus       313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (493)
                      +.+++.-..+.-...+..++.+..++.                ....++.+..+.+......    .....+.+|.++|.
T Consensus        83 fps~~~~~iL~Rftlp~r~~~v~g~g~----------------~iaagsdD~~vK~~~~~D~----s~~~~lrgh~apVl  142 (933)
T KOG1274|consen   83 FPSGEEDTILARFTLPIRDLAVSGSGK----------------MIAAGSDDTAVKLLNLDDS----SQEKVLRGHDAPVL  142 (933)
T ss_pred             CCCCCccceeeeeeccceEEEEecCCc----------------EEEeecCceeEEEEecccc----chheeecccCCcee
Confidence            987765433333333445555544332                2334555555555544322    33567899999999


Q ss_pred             EEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      +|.|+|++ +||+.+-||.|++||+.++.+.+++.         ....++.++|+| ++..|+..+.|+.|++|+..+..
T Consensus       143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we  221 (933)
T KOG1274|consen  143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWE  221 (933)
T ss_pred             eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCce
Confidence            99999999 99999999999999999998887764         245678899999 87788888899999999999987


Q ss_pred             EEE---ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          463 VVD---YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       463 ~~~---~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ...   ...+...++.+.|+|+|+|||+++-++
T Consensus       222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g  254 (933)
T KOG1274|consen  222 LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG  254 (933)
T ss_pred             eheeecccccccceEEEEEcCCCcEEeeeccCC
Confidence            652   334445599999999999999998654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.77  E-value=1e-17  Score=151.43  Aligned_cols=215  Identities=20%  Similarity=0.241  Sum_probs=160.4

Q ss_pred             chhhhhccccccCC---CcccccccccCCCCCCccccccCCcccccc----------cc-----------chhhhhhhhc
Q 011126          166 DEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEE----------SR-----------DLVDAKRKVK  221 (493)
Q Consensus       166 ~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~----------~~-----------~~~~~~~~~k  221 (493)
                      .+|...  ++.|+|   |..|+...|+.+..     ||.+-+.....          +.           -......+..
T Consensus        17 ~~~~~~--v~Sv~wn~~g~~lasgs~dktv~-----v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i   89 (313)
T KOG1407|consen   17 QGHVQK--VHSVAWNCDGTKLASGSFDKTVS-----VWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI   89 (313)
T ss_pred             hhhhhc--ceEEEEcccCceeeecccCCceE-----EEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceE
Confidence            345444  667776   88888888888887     66554332110          00           0111233345


Q ss_pred             cccccccCceeeeec-cccc--ceeccCCCeEEeeecCCeEEEEECCCccc-----------------------------
Q 011126          222 RGWLKKLGAMARIID-RHGS--ATLKPGDHELTLGQRMRRVRVHPVKKQSR-----------------------------  269 (493)
Q Consensus       222 ~~w~~~~~~~~~~~~-~~~~--~~fsp~g~~lasgs~dg~V~vwd~~~~~~-----------------------------  269 (493)
                      +.|+.+.++...... ...-  +.|+|+|.+++++.+|..|.+.|.++...                             
T Consensus        90 r~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG  169 (313)
T KOG1407|consen   90 RIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG  169 (313)
T ss_pred             EEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence            666666555333222 2222  88999999999999999998887765221                             


Q ss_pred             -----cccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceee
Q 011126          270 -----ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIP  344 (493)
Q Consensus       270 -----~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (493)
                           .+..+...+.+++|...+.||+|+|+|+|||+|+.|..+.+||+.+.-+                          
T Consensus       170 ~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC--------------------------  223 (313)
T KOG1407|consen  170 CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC--------------------------  223 (313)
T ss_pred             eEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh--------------------------
Confidence                 1124455678999999999999999999999999999999999865433                          


Q ss_pred             eeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEE
Q 011126          345 IDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR  423 (493)
Q Consensus       345 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~  423 (493)
                                                          ++.+..+.-+|..|.|+.+| +||++++|..|-|=++.+|..+.
T Consensus       224 ------------------------------------~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~  267 (313)
T KOG1407|consen  224 ------------------------------------ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW  267 (313)
T ss_pred             ------------------------------------heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEE
Confidence                                                33445577889999999999 99999999999999999999999


Q ss_pred             EecCCCcEEEEEEccCCCCEEEEEeCC
Q 011126          424 VFSHNNYVTSVAFNPVDDNYFISGSID  450 (493)
Q Consensus       424 ~~~h~~~V~~v~fsp~d~~~l~sgs~D  450 (493)
                      .+.+.++-..|+|+| ...+||-++.|
T Consensus       268 eI~~~~~t~tVAWHP-k~~LLAyA~dd  293 (313)
T KOG1407|consen  268 EIPCEGPTFTVAWHP-KRPLLAYACDD  293 (313)
T ss_pred             EeeccCCceeEEecC-CCceeeEEecC
Confidence            999999999999999 78888877665

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.77  E-value=7.2e-18  Score=155.60  Aligned_cols=196  Identities=20%  Similarity=0.312  Sum_probs=148.8

Q ss_pred             eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC------------------eeeeeeeccCCCCceEEEeeCCC
Q 011126          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH------------------ERLDGFDVQDTDPSCLYFTINHL  339 (493)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~------------------~~~~~~~~~~~~~~~~~~~~~~~  339 (493)
                      ..+..|++++.+.+|+|||.++|+|+.|..|+|.|+...                  -.++++..+..++.++.|.+.  
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr--  183 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR--  183 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch--
Confidence            356789999999999999999999999999999998521                  112233333333444433332  


Q ss_pred             CceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC
Q 011126          340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI  418 (493)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~  418 (493)
                                    ....+.++.+..+.+++......  +..........+|.+|.|+|.| +|+.|....+++|||+.+
T Consensus       184 --------------e~ILiS~srD~tvKlFDfsK~sa--KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T  247 (430)
T KOG0640|consen  184 --------------ETILISGSRDNTVKLFDFSKTSA--KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT  247 (430)
T ss_pred             --------------hheEEeccCCCeEEEEecccHHH--HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence                          23445677787777776532211  1111122346789999999999 999999999999999999


Q ss_pred             CcEEEEe----cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCC-CCCeEEEEEccCCCEEEEeecC
Q 011126          419 DRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDI-REIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       419 ~~~~~~~----~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~-~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      .+|...-    +|.+.|+++.+++ .+++.++|+.||.|+|||--.++++..  ..| ...|.+..|..+|++++++|.|
T Consensus       248 ~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D  326 (430)
T KOG0640|consen  248 YQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD  326 (430)
T ss_pred             eeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence            9987655    3999999999999 999999999999999999988888742  223 4579999999999999999877


Q ss_pred             C
Q 011126          492 F  492 (493)
Q Consensus       492 ~  492 (493)
                      -
T Consensus       327 S  327 (430)
T KOG0640|consen  327 S  327 (430)
T ss_pred             c
Confidence            4

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.77  E-value=1.9e-16  Score=154.62  Aligned_cols=256  Identities=19%  Similarity=0.236  Sum_probs=183.0

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecc-cCCEEEEEEccCCCEEEEEECCC
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGGEDG  306 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~Lasgs~Dg  306 (493)
                      .+.+.+..+.+..+.|+|.+..|+.....+.+.+|+..+......    ...+..+ +.-|.|++|.++|. +++|..+|
T Consensus       193 ~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~----~~~fek~ekk~Vl~v~F~engd-viTgDS~G  267 (626)
T KOG2106|consen  193 LGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR----QGIFEKREKKFVLCVTFLENGD-VITGDSGG  267 (626)
T ss_pred             cCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE----eeccccccceEEEEEEEcCCCC-EEeecCCc
Confidence            445667777788899999999888888889999998876542111    1122222 35799999999996 67999999


Q ss_pred             cEEEEecCCCeeeeeeeccCCCCceEEEeeCC-------CCceeeeeccCccccc---------eeeeecCCCceEEEcC
Q 011126          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINH-------LSQLIPIDVDKEKIDK---------TKSLRKSSDLTCVVLP  370 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~~~~  370 (493)
                      .|.||+..+.+..+....+...+.++.+.-++       ...+..++-+-.+...         ...+..... .+++-.
T Consensus       268 ~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~-di~vGT  346 (626)
T KOG2106|consen  268 NILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKG-DILVGT  346 (626)
T ss_pred             eEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCC-cEEEee
Confidence            99999998887777777777666666543332       1122222211111100         000111111 122222


Q ss_pred             CCceee----cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEE
Q 011126          371 PKVFRL----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (493)
Q Consensus       371 ~~~~~~----~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~  445 (493)
                      .+.+-+    .........+|......++.+|.. .++|++.|++++||+  ..+++......+++.|+.|+| .+ .+|
T Consensus       347 trN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va  422 (626)
T KOG2106|consen  347 TRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVA  422 (626)
T ss_pred             ccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEE
Confidence            222211    122334557899999999999998 999999999999999  566666667889999999999 77 999


Q ss_pred             EEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          446 SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       446 sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      .|...|...+.|..+..++.......+++.+.|+|+|.+||+|+.|.+
T Consensus       423 ~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~  470 (626)
T KOG2106|consen  423 VGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH  470 (626)
T ss_pred             EeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCe
Confidence            999999999999999888876666999999999999999999998864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=1.2e-17  Score=165.26  Aligned_cols=226  Identities=23%  Similarity=0.357  Sum_probs=177.3

Q ss_pred             hhhhhhhhccccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccc-ccccccceeeecccCCEEEEE
Q 011126          213 LVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE-LSSLYTGQEFLAHEGSILTMK  291 (493)
Q Consensus       213 ~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~-~~~~~~~~~l~~H~~~I~~l~  291 (493)
                      +...++...+.|..++ ++..|.+.+..++|+|....|++++.||++++|++++.... ...+....+|.+|.++|.|++
T Consensus       273 ~~~~k~a~~k~w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~  351 (577)
T KOG0642|consen  273 LSDLKKAFTKKWNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVV  351 (577)
T ss_pred             hhhhhhhhheecceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEE
Confidence            3345555667788777 88889999999999999999999999999999999542221 123445568999999999999


Q ss_pred             EccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCC
Q 011126          292 FSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP  371 (493)
Q Consensus       292 fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  371 (493)
                      +.++++++++|+.||+|+.|++....-  .+...                                     +       +
T Consensus       352 v~~n~~~~ysgg~Dg~I~~w~~p~n~d--p~ds~-------------------------------------d-------p  385 (577)
T KOG0642|consen  352 VPSNGEHCYSGGIDGTIRCWNLPPNQD--PDDSY-------------------------------------D-------P  385 (577)
T ss_pred             ecCCceEEEeeccCceeeeeccCCCCC--ccccc-------------------------------------C-------c
Confidence            999999999999999999998742110  00000                                     0       0


Q ss_pred             CceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE-----------------------------
Q 011126          372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-----------------------------  421 (493)
Q Consensus       372 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~-----------------------------  421 (493)
                            ......+.||...|+.+++|+.. .|++++.||+|++|+......                             
T Consensus       386 ------~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~  459 (577)
T KOG0642|consen  386 ------SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASF  459 (577)
T ss_pred             ------chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhc
Confidence                  01134578999999999999987 999999999999998643222                             


Q ss_pred             ---------------EEEec--------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEE
Q 011126          422 ---------------LRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVC  477 (493)
Q Consensus       422 ---------------~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~  477 (493)
                                     +..+.        -...++.+.++| ...+.+++..|+.|+++|..+++++. ...|...+++++
T Consensus       460 ~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsla  538 (577)
T KOG0642|consen  460 RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLA  538 (577)
T ss_pred             ccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceeccee
Confidence                           11111        113567888999 88999999999999999999999884 788999999999


Q ss_pred             EccCCCEEEEeecCC
Q 011126          478 YCPDGKVRQNSACNF  492 (493)
Q Consensus       478 ~spdG~~l~s~s~d~  492 (493)
                      +.|+|-+|+++++|.
T Consensus       539 i~~ng~~l~s~s~d~  553 (577)
T KOG0642|consen  539 IDPNGPYLMSGSHDG  553 (577)
T ss_pred             ecCCCceEEeecCCc
Confidence            999999999998874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=1.8e-17  Score=157.44  Aligned_cols=183  Identities=26%  Similarity=0.402  Sum_probs=143.7

Q ss_pred             CCeEEe---eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCeeeeee
Q 011126          247 DHELTL---GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGF  322 (493)
Q Consensus       247 g~~las---gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~~~~~  322 (493)
                      .++||.   ++.-|...|-.+.+..+.-..   ...+.||+++|..++|+| +.+.||||++|.+|.||++..+.....+
T Consensus        44 PkfiAvi~easgGgaf~ViPl~k~Gr~d~~---~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l  120 (472)
T KOG0303|consen   44 PKFVAVIIEASGGGAFLVIPLVKTGRMDAS---YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL  120 (472)
T ss_pred             CceEEEEEecCCCcceeecccccccccCCC---CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc
Confidence            345554   344456666665543322111   113579999999999999 7789999999999999999665432211


Q ss_pred             eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--
Q 011126          323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--  400 (493)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--  400 (493)
                                                                             ..|+..+.||...|--++|+|.-  
T Consensus       121 -------------------------------------------------------tepvv~L~gH~rrVg~V~wHPtA~N  145 (472)
T KOG0303|consen  121 -------------------------------------------------------TEPVVELYGHQRRVGLVQWHPTAPN  145 (472)
T ss_pred             -------------------------------------------------------ccceEEEeecceeEEEEeecccchh
Confidence                                                                   24578899999999999999986  


Q ss_pred             eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe-cCCCC-CeEEEEE
Q 011126          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIRE-IVSAVCY  478 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~-~~~~~-~I~sv~~  478 (493)
                      .|++++.|.+|.+|++.++..+.++.|.+.|+++.|+- +|.+|++.+.|.+|||||.++++++.. ..|.+ .-..+-|
T Consensus       146 VLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif  224 (472)
T KOG0303|consen  146 VLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF  224 (472)
T ss_pred             hHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence            99999999999999999999999999999999999999 999999999999999999999999853 34443 3445667


Q ss_pred             ccCCCEEEEe
Q 011126          479 CPDGKVRQNS  488 (493)
Q Consensus       479 spdG~~l~s~  488 (493)
                      --+|+++.+|
T Consensus       225 l~~g~i~tTG  234 (472)
T KOG0303|consen  225 LASGKIFTTG  234 (472)
T ss_pred             eccCceeeec
Confidence            7888855444

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.76  E-value=1.6e-17  Score=170.79  Aligned_cols=187  Identities=18%  Similarity=0.361  Sum_probs=159.1

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      .+.+++.++.|++.+.|...|.|-+|+++.+...-+  +.  .-.+|.++|+.++...-++.+++++.+|.+++||..+.
T Consensus       450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s--f~--~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k  525 (910)
T KOG1539|consen  450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS--FG--DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK  525 (910)
T ss_pred             ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc--cc--cCccccCceeEEEecCCCceEEEccCcceEEEEecCCc
Confidence            344589999999999999999999999986543221  00  12589999999999988899999999999999999766


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (493)
                      ..+..+..                                                               ...+.++.+
T Consensus       526 ~l~~~l~l---------------------------------------------------------------~~~~~~iv~  542 (910)
T KOG1539|consen  526 VLKKSLRL---------------------------------------------------------------GSSITGIVY  542 (910)
T ss_pred             ceeeeecc---------------------------------------------------------------CCCcceeee
Confidence            54332221                                                               234566666


Q ss_pred             eCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeE
Q 011126          397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS  474 (493)
Q Consensus       397 sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~  474 (493)
                      +... .++.+..|-.|+++|+.+.+.++.|. |++.|+.++|+| ||++|++++.|++||+||+.++.++.......+++
T Consensus       543 hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~  621 (910)
T KOG1539|consen  543 HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCT  621 (910)
T ss_pred             eehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEecCCcce
Confidence            6665 88999999999999999999999997 999999999999 99999999999999999999999999888899999


Q ss_pred             EEEEccCCCEEEEeecC
Q 011126          475 AVCYCPDGKVRQNSACN  491 (493)
Q Consensus       475 sv~~spdG~~l~s~s~d  491 (493)
                      ++.|+|+|.+||++..|
T Consensus       622 sls~SPngD~LAT~Hvd  638 (910)
T KOG1539|consen  622 SLSFSPNGDFLATVHVD  638 (910)
T ss_pred             eeEECCCCCEEEEEEec
Confidence            99999999999998765

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.76  E-value=2.8e-18  Score=154.04  Aligned_cols=232  Identities=18%  Similarity=0.270  Sum_probs=184.6

Q ss_pred             eeeecccccceec---cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126          232 ARIIDRHGSATLK---PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (493)
Q Consensus       232 ~~~~~~~~~~~fs---p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V  308 (493)
                      .+|...+..++|+   |+|-+|++++.|+.-.+.+-.+..+       ..+|.+|++.|+....+.+....|+++.|-+-
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-------igtfeghkgavw~~~l~~na~~aasaaadfta   83 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-------IGTFEGHKGAVWSATLNKNATRAASAAADFTA   83 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-------EEeeeccCcceeeeecCchhhhhhhhcccchh
Confidence            3455566666664   6899999999999888877654443       23689999999999999999999999999999


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      +|||..++..+..+... ..+..+.|..+...                .++++.+..+.+++....   .-|...+.+|.
T Consensus        84 kvw~a~tgdelhsf~hk-hivk~~af~~ds~~----------------lltgg~ekllrvfdln~p---~App~E~~ght  143 (334)
T KOG0278|consen   84 KVWDAVTGDELHSFEHK-HIVKAVAFSQDSNY----------------LLTGGQEKLLRVFDLNRP---KAPPKEISGHT  143 (334)
T ss_pred             hhhhhhhhhhhhhhhhh-heeeeEEecccchh----------------hhccchHHHhhhhhccCC---CCCchhhcCCC
Confidence            99999999877766532 23344444433322                234444444545544332   34567788999


Q ss_pred             CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 011126          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT  467 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~  467 (493)
                      +.|..+.|.... .+++++.|++||+||.+++..++.+....+|+++.+++ +|++|.++ ..+.|.+||..+-.+++..
T Consensus       144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaksf~~lKs~  221 (334)
T KOG0278|consen  144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKSFGLLKSY  221 (334)
T ss_pred             CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEEe-cCceeEEeccccccceeec
Confidence            999999999877 88888999999999999999999999999999999999 88887664 5678999999999999988


Q ss_pred             CCCCCeEEEEEccCCCEEEEeecCC
Q 011126          468 DIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       468 ~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ..+..|.+.+.+|+...+++|+-|+
T Consensus       222 k~P~nV~SASL~P~k~~fVaGged~  246 (334)
T KOG0278|consen  222 KMPCNVESASLHPKKEFFVAGGEDF  246 (334)
T ss_pred             cCccccccccccCCCceEEecCcce
Confidence            8999999999999999999998765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=4.9e-17  Score=168.93  Aligned_cols=189  Identities=17%  Similarity=0.343  Sum_probs=154.1

Q ss_pred             eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (493)
Q Consensus       232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW  311 (493)
                      +...-.+..++|+-+|+++|.|+.|-.|++-+......+       ..+.+|+++|.+|.|+|++.+||+.+-||.|+||
T Consensus        93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-------~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-------KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh-------eeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence            334445566899999999999999999999998765533       3578999999999999999999999999999999


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-CCCC
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSE  390 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~  390 (493)
                      ++.++.....+..-...                                                       ... ....
T Consensus       166 ~~~~~~~~~tl~~v~k~-------------------------------------------------------n~~~~s~i  190 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKD-------------------------------------------------------NEFILSRI  190 (933)
T ss_pred             EcccchhhhhcccCCcc-------------------------------------------------------ccccccce
Confidence            99988765554322110                                                       000 1455


Q ss_pred             EeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 011126          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (493)
Q Consensus       391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~  466 (493)
                      +..++|+|+| .|+..+.|++|++|+.........+.   +...+.+++|+| +|.|||+++.||.|-|||+.+..   .
T Consensus       191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t~~---~  266 (933)
T KOG1274|consen  191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVDTHE---R  266 (933)
T ss_pred             eeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEecccch---h
Confidence            6789999997 99999999999999999998888875   455599999999 99999999999999999999822   2


Q ss_pred             cCCCCCeEEEEEccCCCEEE
Q 011126          467 TDIREIVSAVCYCPDGKVRQ  486 (493)
Q Consensus       467 ~~~~~~I~sv~~spdG~~l~  486 (493)
                      ......|++++|.|++..+-
T Consensus       267 ~~~~~~Vc~~aw~p~~n~it  286 (933)
T KOG1274|consen  267 HEFKRAVCCEAWKPNANAIT  286 (933)
T ss_pred             ccccceeEEEecCCCCCeeE
Confidence            45567899999999987654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=1.4e-17  Score=153.96  Aligned_cols=232  Identities=19%  Similarity=0.334  Sum_probs=170.6

Q ss_pred             CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (493)
Q Consensus       229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V  308 (493)
                      +.+.+|.+.+..++.......+.+++.|.+.+||.++...       +...+.||.+.|++|+|++.+.++++++.|++.
T Consensus       142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-------CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-------CLATYTGHTGSVNSIKFHNSGLLLLTASGDETA  214 (481)
T ss_pred             hhhcccccceeeehhhcCCcceeecccccceeEEeecccc-------ceeeecccccceeeEEeccccceEEEccCCcch
Confidence            4467788888888888888899999999999999988654       344689999999999999999999999999999


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      +||...-.-.+..-..+.....        ....-..+    ............++.          ....|+..+.+|.
T Consensus       215 HIW~~av~~~vP~~~a~~~hSs--------EeE~e~sD----e~~~d~d~~~~sD~~----------tiRvPl~~ltgH~  272 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSS--------EEEEEHSD----EHNRDTDSSEKSDGH----------TIRVPLMRLTGHR  272 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCc--------hhhhhccc----ccccccccccccCCc----------eeeeeeeeeeccc
Confidence            9997421100000000000000        00000000    000000000011110          1135688899999


Q ss_pred             CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC--eEE
Q 011126          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--QVV  464 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~--~~~  464 (493)
                      +.|.+..|-..| .+++++.|.+..+||+.++..+..+. |....+.++-+| ..+++++.+.|.+.++||.+..  .+-
T Consensus       273 ~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~  351 (481)
T KOG0300|consen  273 AVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVA  351 (481)
T ss_pred             cceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceee
Confidence            999999999988 99999999999999999999999986 999999999999 9999999999999999999843  233


Q ss_pred             EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          465 DYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       465 ~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      .+.+|.+.|+++.|.-|.+. ++|+.|
T Consensus       352 VFQGHtdtVTS~vF~~dd~v-VSgSDD  377 (481)
T KOG0300|consen  352 VFQGHTDTVTSVVFNTDDRV-VSGSDD  377 (481)
T ss_pred             eecccccceeEEEEecCCce-eecCCC
Confidence            58999999999999988754 455544

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=7.7e-17  Score=156.01  Aligned_cols=231  Identities=18%  Similarity=0.271  Sum_probs=166.4

Q ss_pred             ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC-EEEEEECCCcEEEEec
Q 011126          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKV  313 (493)
Q Consensus       235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V~iWdl  313 (493)
                      ...+.++.|||...+|++++.|++++||.+......     ..+.+.--..+|.+..|.|+|+ .+++++.-..++.||+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-----~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-----KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-----hheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence            456778999999999999999999999999866544     2334555678999999999999 8999999999999999


Q ss_pred             CCCeeeeeeeccCCC-CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126          314 IEHERLDGFDVQDTD-PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (493)
Q Consensus       314 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (493)
                      .+.+..+.-...... ...-.|...+...++.+              .+..+.+.+...+...    .+..++ -.+.|.
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~--------------~G~~G~I~lLhakT~e----li~s~K-ieG~v~  348 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAI--------------AGNNGHIHLLHAKTKE----LITSFK-IEGVVS  348 (514)
T ss_pred             cccccccccCCCCcccchhheeEecCCCCeEEE--------------cccCceEEeehhhhhh----hhheee-eccEEe
Confidence            887653322111111 11112222222222222              2223333333322211    122232 357799


Q ss_pred             EEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcE--EEEEEccCCCCEEEEEeCCCeEEEEeCCCC------eE
Q 011126          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYV--TSVAFNPVDDNYFISGSIDGKVRIWEVRRC------QV  463 (493)
Q Consensus       393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V--~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~------~~  463 (493)
                      .++|+.++ .|++++.+|.|.+||++...|++.|...+.|  ++++.++ ++.|||+|+..|.|.|||..+.      ++
T Consensus       349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP  427 (514)
T KOG2055|consen  349 DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKP  427 (514)
T ss_pred             eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCc
Confidence            99999999 8888889999999999999999999755544  5677778 9999999999999999997643      34


Q ss_pred             E-EecCCCCCeEEEEEccCCCEEEEeec
Q 011126          464 V-DYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       464 ~-~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      + .+......|+++.|+||+++|+.++.
T Consensus       428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  428 IKTVDNLTTAITSLQFNHDAQILAIASR  455 (514)
T ss_pred             hhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence            4 35667778999999999999998764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=1.1e-17  Score=170.66  Aligned_cols=232  Identities=16%  Similarity=0.262  Sum_probs=174.3

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCC
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~  315 (493)
                      ..+.++..++-..++.+++ ..++||.+........-......-+.-.-.+..++|.. +.++||+++..|.|.+||+..
T Consensus        41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            3445777888888888765 45777776654332211000001111123466788876 677999999999999999987


Q ss_pred             ---CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126          316 ---HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (493)
Q Consensus       316 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (493)
                         .+.+..+..|...+.++.|.....+               ..+.++.|+.+..|+.+..    +...++.+....|.
T Consensus       120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~---------------iliSGSQDg~vK~~DlR~~----~S~~t~~~nSESiR  180 (839)
T KOG0269|consen  120 SIRNKLLTVFNEHERSANKLDFHSTEPN---------------ILISGSQDGTVKCWDLRSK----KSKSTFRSNSESIR  180 (839)
T ss_pred             cccchhhhHhhhhccceeeeeeccCCcc---------------EEEecCCCceEEEEeeecc----cccccccccchhhh
Confidence               5566678888888888877666543               3457889999999988753    33566777889999


Q ss_pred             EEEEeCCC--eEEEEeCCCeEEEEECCC-CcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE--EEe
Q 011126          393 DLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--VDY  466 (493)
Q Consensus       393 ~l~~sp~g--~l~sgs~Dg~V~lWd~~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~--~~~  466 (493)
                      ++.|+|..  +++++...|.+++||++. .++...+. |.++|.|+.|+| +..+|||||.|++|+|||+.+.+.  +..
T Consensus       181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~t  259 (839)
T KOG0269|consen  181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHT  259 (839)
T ss_pred             ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeE
Confidence            99999964  999999999999999985 45555554 999999999999 999999999999999999986643  345


Q ss_pred             cCCCCCeEEEEEccCCCEEEEee
Q 011126          467 TDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       467 ~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .....+|..|.|.|..++.+..+
T Consensus       260 InTiapv~rVkWRP~~~~hLAtc  282 (839)
T KOG0269|consen  260 INTIAPVGRVKWRPARSYHLATC  282 (839)
T ss_pred             EeecceeeeeeeccCccchhhhh
Confidence            66678999999999988765443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.9e-16  Score=157.56  Aligned_cols=231  Identities=17%  Similarity=0.237  Sum_probs=177.9

Q ss_pred             ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeeccc-CCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~V~iWdl  313 (493)
                      ...+.+++++.+.+.||.+-.+|.|.||++..      .++....+.+|. ..|-.|+|++ +..|++.+.+|.|.-||+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~------~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl   97 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN------NWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDL   97 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCC------CceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEec
Confidence            35677799999999999999999999999875      344445666664 5799999995 557889999999999999


Q ss_pred             CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (493)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (493)
                      .+++++..+......++.++..+..  ....+.              +.++.+..+......+.  ....+....+.|.+
T Consensus        98 ~~lk~~~~~d~~gg~IWsiai~p~~--~~l~Ig--------------cddGvl~~~s~~p~~I~--~~r~l~rq~sRvLs  159 (691)
T KOG2048|consen   98 HTLKQKYNIDSNGGAIWSIAINPEN--TILAIG--------------CDDGVLYDFSIGPDKIT--YKRSLMRQKSRVLS  159 (691)
T ss_pred             ccCceeEEecCCCcceeEEEeCCcc--ceEEee--------------cCCceEEEEecCCceEE--EEeecccccceEEE
Confidence            9999999998888777777766554  222222              22332222222211111  12223345789999


Q ss_pred             EEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       394 l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      |+|+|++ .+++|+.||.|++||+.++..++...         ....|+++.|-.  ...||+|..-|+|.+||...+.+
T Consensus       160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTL  237 (691)
T KOG2048|consen  160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTL  237 (691)
T ss_pred             EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcch
Confidence            9999999 79999999999999999998877332         234678888874  56799999999999999999998


Q ss_pred             EE-ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          464 VD-YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       464 ~~-~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ++ ..-|...|.+++..+++..++++|.|.
T Consensus       238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~  267 (691)
T KOG2048|consen  238 IQSHSCHDADVLALAVADNEDRVFSAGVDP  267 (691)
T ss_pred             hhhhhhhhcceeEEEEcCCCCeEEEccCCC
Confidence            85 778899999999999999999998764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.74  E-value=3.2e-17  Score=159.84  Aligned_cols=230  Identities=17%  Similarity=0.232  Sum_probs=192.9

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~  315 (493)
                      +.+.++.+.|||+.|++|+.-.++.|||+......+.     .++..-.-.+++++.+||.+..+++..||.|+|||+..
T Consensus       466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprik-----aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn  540 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK-----AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN  540 (705)
T ss_pred             cceeeeEecCCCceEEeccccceeeeeeccCCCcchh-----hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence            3455678999999999999999999999986544332     23344445788999999999999999999999999999


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      ...++.++.+.....|+.+..++                +...+++.|..+..|+.+......     -......|.+|.
T Consensus       541 q~~VrqfqGhtDGascIdis~dG----------------tklWTGGlDntvRcWDlregrqlq-----qhdF~SQIfSLg  599 (705)
T KOG0639|consen  541 QTLVRQFQGHTDGASCIDISKDG----------------TKLWTGGLDNTVRCWDLREGRQLQ-----QHDFSSQIFSLG  599 (705)
T ss_pred             ceeeecccCCCCCceeEEecCCC----------------ceeecCCCccceeehhhhhhhhhh-----hhhhhhhheecc
Confidence            99999999999999888876554                445678888999999887543211     112356899999


Q ss_pred             EeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeE
Q 011126          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS  474 (493)
Q Consensus       396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~  474 (493)
                      ++|++ +|+.|-..+.|.|.............|...|.++.|.+ .|++|++.+.|.-+..|...-|..+........|.
T Consensus       600 ~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVl  678 (705)
T KOG0639|consen  600 YCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL  678 (705)
T ss_pred             cCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecc-cCceeeecCchhhhhhccCccccceeeccccCcce
Confidence            99999 99999999999998887766666666999999999999 99999999999999999999988887777788999


Q ss_pred             EEEEccCCCEEEEeecCC
Q 011126          475 AVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       475 sv~~spdG~~l~s~s~d~  492 (493)
                      +...+-|.+++++|+.||
T Consensus       679 sCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  679 SCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             eeeeccCceEEEecCCCc
Confidence            999999999999999885

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=6.9e-17  Score=155.76  Aligned_cols=225  Identities=16%  Similarity=0.207  Sum_probs=168.9

Q ss_pred             CCCeEEeeecCCeEEEEECCCccccccccccc--------------eeeecccCCEEEEEEccC-CCEEEEEECCCcEEE
Q 011126          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTG--------------QEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRV  310 (493)
Q Consensus       246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~--------------~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~i  310 (493)
                      .|+++|.|+.+..|.|||+.-....+..+..+              ..-.+|+..|..|.|+.+ .+.|||||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            46799999999999999986543322211111              123479999999999885 458999999999999


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      ||+.++++...+..+...+.++.|.+....               ..+.++.++.+.+.+.+......    ..-.-.+.
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~---------------~LLsGs~D~~V~l~D~R~~~~s~----~~wk~~g~  331 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPS---------------VLLSGSYDGTVALKDCRDPSNSG----KEWKFDGE  331 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCce---------------EEEeccccceEEeeeccCccccC----ceEEeccc
Confidence            999999999999988888888888776543               33567777788877766421111    11123578


Q ss_pred             EeEEEEeCCC--eEEEEeCCCeEEEEECCCC-cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE--E
Q 011126          391 VLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--V  464 (493)
Q Consensus       391 V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~--~  464 (493)
                      |-.++|.|..  .++++..||+|+-+|++.. +++.++. |.+.|.+|++++....+++|++.|+.|++|++..-..  +
T Consensus       332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v  411 (463)
T KOG0270|consen  332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV  411 (463)
T ss_pred             eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence            9999999987  8889999999999999975 7888876 9999999999998899999999999999999975433  2


Q ss_pred             EecCC-CCCeEEEEEccCCCEE-EEee
Q 011126          465 DYTDI-REIVSAVCYCPDGKVR-QNSA  489 (493)
Q Consensus       465 ~~~~~-~~~I~sv~~spdG~~l-~s~s  489 (493)
                      .-... -+...+.++.|+-.++ +.||
T Consensus       412 ~~~~~~~~rl~c~~~~~~~a~~la~GG  438 (463)
T KOG0270|consen  412 KEHSFKLGRLHCFALDPDVAFTLAFGG  438 (463)
T ss_pred             ccccccccceeecccCCCcceEEEecC
Confidence            21111 1235666777776544 4444

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.74  E-value=7e-17  Score=157.30  Aligned_cols=219  Identities=13%  Similarity=0.220  Sum_probs=174.5

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~  317 (493)
                      ..|++......++++|+..+.|+|||++..       .+.+.+.+|+..|+++.++....|||+++..|-|.|..+.++.
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~  154 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLRAK-------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ  154 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhHHH-------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc
Confidence            344555556689999999999999998722       2334578999999999999999999999999999999999888


Q ss_pred             eeeeeeccCCCCc-eEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126          318 RLDGFDVQDTDPS-CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (493)
Q Consensus       318 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (493)
                      ....+........ .+.+.+..               +......+.++.+.+|+......   ..+-...|..+...|+|
T Consensus       155 ~tt~f~~~sgqsvRll~ys~sk---------------r~lL~~asd~G~VtlwDv~g~sp---~~~~~~~HsAP~~gicf  216 (673)
T KOG4378|consen  155 KTTTFTIDSGQSVRLLRYSPSK---------------RFLLSIASDKGAVTLWDVQGMSP---IFHASEAHSAPCRGICF  216 (673)
T ss_pred             cccceecCCCCeEEEeeccccc---------------ceeeEeeccCCeEEEEeccCCCc---ccchhhhccCCcCccee
Confidence            7766665533222 22332222               23334567778888888765322   13334579999999999


Q ss_pred             eCCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC-eEE-EecCCCCC
Q 011126          397 SKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVV-DYTDIREI  472 (493)
Q Consensus       397 sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~-~~~-~~~~~~~~  472 (493)
                      +|.+  +|++.+.|+.|.+||++.......+....+.+.++|.| +|.+|+.|...|+|..||++.. .++ ....|...
T Consensus       217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s  295 (673)
T KOG4378|consen  217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS  295 (673)
T ss_pred             cCCccceEEEecccceEEEeecccccccceeeecCCcceeeecC-CceEEEeecCCceEEEEecccCCCCceEeeecccc
Confidence            9988  89999999999999999999888888888999999999 9999999999999999999965 344 46778889


Q ss_pred             eEEEEEccCC
Q 011126          473 VSAVCYCPDG  482 (493)
Q Consensus       473 I~sv~~spdG  482 (493)
                      |++|+|.|.-
T Consensus       296 Vt~vafq~s~  305 (673)
T KOG4378|consen  296 VTRVAFQPSP  305 (673)
T ss_pred             eeEEEeeecc
Confidence            9999999875

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=1.5e-17  Score=176.61  Aligned_cols=229  Identities=17%  Similarity=0.262  Sum_probs=167.4

Q ss_pred             ccceeccCCCe----EEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECCCcEEEEec
Q 011126          239 GSATLKPGDHE----LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKV  313 (493)
Q Consensus       239 ~~~~fsp~g~~----lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~V~iWdl  313 (493)
                      +.++|.+.|..    ||.|..||.|.+|+..+-... .......++..|++.|..+.|++.. ++||+|+.||.|.|||+
T Consensus        68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~-~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDl  146 (1049)
T KOG0307|consen   68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN-ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDL  146 (1049)
T ss_pred             eeeeecccCCCccceeeccccCCceEEecchhhccC-cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEecc
Confidence            34677766665    888999999999998763111 1122233567899999999999954 59999999999999999


Q ss_pred             CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC--CE
Q 011126          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EV  391 (493)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V  391 (493)
                      ...+......           .......+.++.++..  .......++..+.+++|+.+..    +++..+..|.+  .+
T Consensus       147 nn~~tP~~~~-----------~~~~~~eI~~lsWNrk--vqhILAS~s~sg~~~iWDlr~~----~pii~ls~~~~~~~~  209 (1049)
T KOG0307|consen  147 NKPETPFTPG-----------SQAPPSEIKCLSWNRK--VSHILASGSPSGRAVIWDLRKK----KPIIKLSDTPGRMHC  209 (1049)
T ss_pred             CCcCCCCCCC-----------CCCCcccceEeccchh--hhHHhhccCCCCCceeccccCC----CcccccccCCCccce
Confidence            8755433332           1111222333333322  2223346677788999998763    44555555444  57


Q ss_pred             eEEEEeCCC--eEEEEeCCC---eEEEEECCC-CcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          392 LDLSWSKNG--FLLSSSADK---TVRLWQVGI-DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       392 ~~l~~sp~g--~l~sgs~Dg---~V~lWd~~~-~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      ..|+|+|++  .|++++.|.   .|.+||++. ...++++ .|...|.++.|++.|..+|++++.|++|.+|+..+++++
T Consensus       210 S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl  289 (1049)
T KOG0307|consen  210 SVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL  289 (1049)
T ss_pred             eeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence            899999998  777777664   599999984 4567777 499999999999988899999999999999999999998


Q ss_pred             E-ecCCCCCeEEEEEccCCCEE
Q 011126          465 D-YTDIREIVSAVCYCPDGKVR  485 (493)
Q Consensus       465 ~-~~~~~~~I~sv~~spdG~~l  485 (493)
                      . +....+.+..+.|+|....+
T Consensus       290 ~~~p~~~nW~fdv~w~pr~P~~  311 (1049)
T KOG0307|consen  290 GELPAQGNWCFDVQWCPRNPSV  311 (1049)
T ss_pred             eecCCCCcceeeeeecCCCcch
Confidence            4 56667789999999987633

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.73  E-value=2.1e-17  Score=157.72  Aligned_cols=208  Identities=25%  Similarity=0.422  Sum_probs=155.3

Q ss_pred             cccccceeccCCC-eEEeeecCCeEEEEECCCccccc--cccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126          236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSREL--SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       236 ~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd  312 (493)
                      ..+..+.|+++.. .+|+|+.|..|+||.+......-  ........+..|+.+|+++.|+|+|.+||||+.+|.|.+|.
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence            3445578888776 99999999999999887544332  12233346788999999999999999999999999999997


Q ss_pred             cCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (493)
Q Consensus       313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (493)
                      ...-. +.  ....    +.                  ..                 ....    ......+.+|...|.
T Consensus        94 ~~~~~-~~--~~d~----e~------------------~~-----------------~ke~----w~v~k~lr~h~~diy  127 (434)
T KOG1009|consen   94 QGDVR-IF--DADT----EA------------------DL-----------------NKEK----WVVKKVLRGHRDDIY  127 (434)
T ss_pred             ecCcC-Cc--cccc----hh------------------hh-----------------Cccc----eEEEEEecccccchh
Confidence            64310 00  0000    00                  00                 0000    011345678999999


Q ss_pred             EEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecC--
Q 011126          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD--  468 (493)
Q Consensus       393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~--  468 (493)
                      .++|+|++ ++++++.|.++++||+..+..+..+. |..+|..++|.| ..+|+++-+.|.+.+++.+...+++....  
T Consensus       128 dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~  206 (434)
T KOG1009|consen  128 DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLD  206 (434)
T ss_pred             hhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeee
Confidence            99999999 99999999999999999999999886 999999999999 99999999999988888887554432111  


Q ss_pred             ------------------C----CCCeEEEEEccCCCEEEEeec
Q 011126          469 ------------------I----REIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       469 ------------------~----~~~I~sv~~spdG~~l~s~s~  490 (493)
                                        |    +.-...++|+|||..|++.+.
T Consensus       207 ~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag  250 (434)
T KOG1009|consen  207 IMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG  250 (434)
T ss_pred             EeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence                              1    112457889999999988653

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=2e-16  Score=146.17  Aligned_cols=248  Identities=19%  Similarity=0.239  Sum_probs=158.5

Q ss_pred             CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceec-c-CCCeEEeeecCC
Q 011126          180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLK-P-GDHELTLGQRMR  257 (493)
Q Consensus       180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fs-p-~g~~lasgs~dg  257 (493)
                      ||.++..+-++++.     ||++-...                +-|.......+|...+..+.|. | -|+.+|+++.|+
T Consensus        25 GRRmAtCSsDq~vk-----I~d~~~~s----------------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr   83 (361)
T KOG2445|consen   25 GRRMATCSSDQTVK-----IWDSTSDS----------------GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR   83 (361)
T ss_pred             CceeeeccCCCcEE-----EEeccCCC----------------CceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence            77888888888777     77752211                1122223344455555556653 3 488999999999


Q ss_pred             eEEEEECCCccccc--cccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcEEEEecCCCeeeeeeec---------
Q 011126          258 RVRVHPVKKQSREL--SSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEHERLDGFDV---------  324 (493)
Q Consensus       258 ~V~vwd~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~---------  324 (493)
                      +|.||.-.....+.  .......++....+.|+.++|.|  -|-.||+++.||.||||+......+.....         
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~  163 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID  163 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence            99999875333222  23344456778889999999999  477899999999999998755433322221         


Q ss_pred             ----cCCCCceEEEeeCCCC-ceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126          325 ----QDTDPSCLYFTINHLS-QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (493)
Q Consensus       325 ----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (493)
                          +.....|+.|++.... +.+.++.+....         .-..+++|........-..+.++.+|..+|++|+|.|+
T Consensus       164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~---------~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAP---------HLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             CcccccCcceEEeeccccccCceEEEEcccCCc---------cccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence                1222334444433221 222222222100         00122222111111011235566799999999999997


Q ss_pred             -C----eEEEEeCCCeEEEEECCCCc--------------------EEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeE
Q 011126          400 -G----FLLSSSADKTVRLWQVGIDR--------------------CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKV  453 (493)
Q Consensus       400 -g----~l~sgs~Dg~V~lWd~~~~~--------------------~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V  453 (493)
                       |    +||+++.|| |+||.++...                    .+..+. |...|..+.|+- .|..|++.+.||+|
T Consensus       235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~V  312 (361)
T KOG2445|consen  235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCV  312 (361)
T ss_pred             cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCcee
Confidence             3    789999999 9999987311                    122232 999999999999 99999999999999


Q ss_pred             EEEeCC
Q 011126          454 RIWEVR  459 (493)
Q Consensus       454 ~IWdl~  459 (493)
                      |+|...
T Consensus       313 RLWkan  318 (361)
T KOG2445|consen  313 RLWKAN  318 (361)
T ss_pred             eehhhh
Confidence            999765

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=6.5e-17  Score=156.85  Aligned_cols=224  Identities=17%  Similarity=0.235  Sum_probs=156.2

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccccc--ccccceeeecccCCEEEEEEccCC--CEEEEEECCC
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS--SLYTGQEFLAHEGSILTMKFSLDG--QYLASGGEDG  306 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~--~~~~~~~l~~H~~~I~~l~fspdg--~~Lasgs~Dg  306 (493)
                      +..|...++++.|+-||.+|++|++||.|.+|.+...-....  ...+...+..|+-+|+++...+.|  .+|+|++.|.
T Consensus       119 ~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~  198 (476)
T KOG0646|consen  119 LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR  198 (476)
T ss_pred             HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence            355777888899999999999999999999998754222111  233445688999999999998753  4899999999


Q ss_pred             cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (493)
                      ++++||+..+..+.++..+.. +.++.+  +.....+.++...+++.............-+.  .+.+......+..+.|
T Consensus       199 t~k~wdlS~g~LLlti~fp~s-i~av~l--Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~--~k~~~~~~t~~~~~~G  273 (476)
T KOG0646|consen  199 TIKLWDLSLGVLLLTITFPSS-IKAVAL--DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVN--QKGRHEENTQINVLVG  273 (476)
T ss_pred             eEEEEEeccceeeEEEecCCc-ceeEEE--cccccEEEecCCcceEEeeehhcCCccccccc--ccccccccceeeeecc
Confidence            999999999998887766532 333333  33333333333333333322222211111000  2333344566788899


Q ss_pred             CCC--CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          387 HSS--EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       387 h~~--~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      |.+  .|+||+.+-+| +|++|+.||.|+|||+.+.++++++. ..++|+.+.+.|-....+..-.....+-.|++.
T Consensus       274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk  350 (476)
T KOG0646|consen  274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK  350 (476)
T ss_pred             ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence            999  99999999999 99999999999999999999999998 789999999988333333333333445555543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.7e-16  Score=147.21  Aligned_cols=203  Identities=19%  Similarity=0.311  Sum_probs=145.4

Q ss_pred             ceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeee----eeeeccCCCCceEEEeeCCCCceeeeeccCccc
Q 011126          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL----DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI  352 (493)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (493)
                      ...+++|.+.|++|+|+.||++||+++.|++|+||++......    ...+.....++.+.|.++-...++.+.  .+..
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~--~g~~  156 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK--RGNK  156 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc--cCCE
Confidence            3467899999999999999999999999999999998764321    122233345666777766655544443  1111


Q ss_pred             cceeeeecCCCce----EEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-
Q 011126          353 DKTKSLRKSSDLT----CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-  426 (493)
Q Consensus       353 ~~~~~~~~s~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-  426 (493)
                      ..........++.    .+-|+.         .+--..|.-.|..+-...++ +|++++.|.+|.||+++ |+.+..+. 
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~---------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt  226 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDN---------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT  226 (420)
T ss_pred             EEEEEeeecccCCCCcccccccc---------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence            1111111111111    111111         11223477788888777777 99999999999999999 88888876 


Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC---CCe------EEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR---RCQ------VVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~---~~~------~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ....-+..+.+| +|+++++++.---|++|.+-   +|.      +..+.+|...|++++|+|+...+++.+.|+
T Consensus       227 nq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG  300 (420)
T KOG2096|consen  227 NQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG  300 (420)
T ss_pred             ccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence            444556788999 99999999999999999973   332      346899999999999999999999999876

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.70  E-value=3.3e-16  Score=158.25  Aligned_cols=264  Identities=21%  Similarity=0.291  Sum_probs=177.8

Q ss_pred             ccccc--ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE
Q 011126          222 RGWLK--KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL  299 (493)
Q Consensus       222 ~~w~~--~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L  299 (493)
                      ..|..  +++.+.+....-...-|+|++..+++-+..|-.++|..+...    ...+...+.||.+.|..+.|+|.|.||
T Consensus       301 GiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~----~w~~~~~iSGH~~~V~dv~W~psGefl  376 (764)
T KOG1063|consen  301 GIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT----FWTQEPVISGHVDGVKDVDWDPSGEFL  376 (764)
T ss_pred             ceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc----ceeeccccccccccceeeeecCCCCEE
Confidence            44543  444555444444457899999999999999999999832211    222233478999999999999999999


Q ss_pred             EEEECCCcEEEEecC----CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccce--------------------
Q 011126          300 ASGGEDGTVRVWKVI----EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT--------------------  355 (493)
Q Consensus       300 asgs~Dg~V~iWdl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  355 (493)
                      ++.+.|-+-|++---    +...+..-+.|.....|+.+..... .++..+  ..++.+.                    
T Consensus       377 Lsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~-~FVSgA--dEKVlRvF~aPk~fv~~l~~i~g~~~~  453 (764)
T KOG1063|consen  377 LSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL-QFVSGA--DEKVLRVFEAPKSFVKSLMAICGKCFK  453 (764)
T ss_pred             EEeccccceeeecccccccceeeecccccccccceeeehccCCc-eeeecc--cceeeeeecCcHHHHHHHHHHhCcccc
Confidence            999999999998643    1122333344455555655544211 111100  0000000                    


Q ss_pred             -----------ee-------ee--cCCCceE-EEcCC-----Cceee-------------cccceEEEecCCCCEeEEEE
Q 011126          356 -----------KS-------LR--KSSDLTC-VVLPP-----KVFRL-------------LEKPLHEFQGHSSEVLDLSW  396 (493)
Q Consensus       356 -----------~~-------~~--~s~~~~~-~~~~~-----~~~~~-------------~~~~~~~~~~h~~~V~~l~~  396 (493)
                                 ..       ..  ....+.. ..+-.     ....+             .-..++.+.||...|++++.
T Consensus       454 ~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~  533 (764)
T KOG1063|consen  454 GSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAI  533 (764)
T ss_pred             CchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEe
Confidence                       00       00  0000000 00000     00000             01345678999999999999


Q ss_pred             eCCC-eEEEEeCC-----CeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-----
Q 011126          397 SKNG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----  464 (493)
Q Consensus       397 sp~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-----  464 (493)
                      +|+| ++|+++..     ..|+||+..+-..+..+. |.-.|+.++|+| |++||++.+.|.++.+|........     
T Consensus       534 s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa  612 (764)
T KOG1063|consen  534 SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFA  612 (764)
T ss_pred             cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhc
Confidence            9999 88988754     459999998877777554 999999999999 9999999999999999998654322     


Q ss_pred             EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          465 DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       465 ~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      ....|...|++..|+|+++++++++.||.
T Consensus       613 ~~k~HtRIIWdcsW~pde~~FaTaSRDK~  641 (764)
T KOG1063|consen  613 CLKAHTRIIWDCSWSPDEKYFATASRDKK  641 (764)
T ss_pred             cccccceEEEEcccCcccceeEEecCCce
Confidence            36789999999999999999999999873

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.70  E-value=1.1e-16  Score=150.79  Aligned_cols=229  Identities=18%  Similarity=0.212  Sum_probs=175.8

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+.+|.+.+..++++.  ..+++++.|.+|+.|.+...        ..+++. ..+.++.|.-+..+..++|||++  |.
T Consensus       104 ~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~--------p~~til-g~s~~~gIdh~~~~~~FaTcGe~--i~  170 (433)
T KOG0268|consen  104 TFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP--------PLHTIL-GKSVYLGIDHHRKNSVFATCGEQ--ID  170 (433)
T ss_pred             eeecccCceeeEEecc--cceEEecCCcceeeeeccCC--------cceeee-ccccccccccccccccccccCce--ee
Confidence            4566777777777777  67888889999999998752        222333 24567777777777889999875  99


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      |||.....++..+......+.++.+.+...+.+.               ....+..+++++.+......+.+.     ..
T Consensus       171 IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa---------------s~~sDrsIvLyD~R~~~Pl~KVi~-----~m  230 (433)
T KOG0268|consen  171 IWDEQRDNPVSSMSWGADSISSVKFNPVETSILA---------------SCASDRSIVLYDLRQASPLKKVIL-----TM  230 (433)
T ss_pred             ecccccCCccceeecCCCceeEEecCCCcchhee---------------eeccCCceEEEecccCCccceeee-----ec
Confidence            9999988888888888777777777666544333               345677788888776544333333     23


Q ss_pred             CEeEEEEeCCC-eEEEEeCCCeEEEEECCCC-cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-
Q 011126          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-  465 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-  465 (493)
                      ..+.|+|+|.+ .+++|+.|..+..||++.- +++..+. |.+.|..|.|+| .|+-|++||.|.+||||.++.+..-. 
T Consensus       231 RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRdi  309 (433)
T KOG0268|consen  231 RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRDI  309 (433)
T ss_pred             cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-CcchhccccccceEEEeecCCCcchhh
Confidence            45689999977 9999999999999999853 4555554 999999999999 99999999999999999999876543 


Q ss_pred             -ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          466 -YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       466 -~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                       ...--..|.++.|+.|.+++++|+.|.
T Consensus       310 YhtkRMq~V~~Vk~S~Dskyi~SGSdd~  337 (433)
T KOG0268|consen  310 YHTKRMQHVFCVKYSMDSKYIISGSDDG  337 (433)
T ss_pred             hhHhhhheeeEEEEeccccEEEecCCCc
Confidence             334445799999999999999998763

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.69  E-value=1.7e-14  Score=141.08  Aligned_cols=223  Identities=13%  Similarity=0.160  Sum_probs=146.1

Q ss_pred             cccceeccCCCeE-EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCCcEEEEecCC
Q 011126          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIE  315 (493)
Q Consensus       238 ~~~~~fsp~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~V~iWdl~~  315 (493)
                      +..++|+|++..+ +++..++.|++|+.......       ..+..|. .+..+.|+|++++|+++ +.|+.|++||+.+
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-------~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~  104 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-------GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIET  104 (300)
T ss_pred             CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-------EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            3458999999876 56778999999998754321       1233333 35678999999977654 5689999999998


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      .+.+..+.... .+..+.+.+++.  .+.....             ....+..++......    ..... ....+..++
T Consensus       105 ~~~~~~~~~~~-~~~~~~~~~dg~--~l~~~~~-------------~~~~~~~~d~~~~~~----~~~~~-~~~~~~~~~  163 (300)
T TIGR03866       105 RKVLAEIPVGV-EPEGMAVSPDGK--IVVNTSE-------------TTNMAHFIDTKTYEI----VDNVL-VDQRPRFAE  163 (300)
T ss_pred             CeEEeEeeCCC-CcceEEECCCCC--EEEEEec-------------CCCeEEEEeCCCCeE----EEEEE-cCCCccEEE
Confidence            87766664322 234444444332  2211111             111222233322111    11111 223457899


Q ss_pred             EeCCC-eE-EEEeCCCeEEEEECCCCcEEEEecCC--------CcEEEEEEccCCCCEEEE-EeCCCeEEEEeCCCCeEE
Q 011126          396 WSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHN--------NYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       396 ~sp~g-~l-~sgs~Dg~V~lWd~~~~~~~~~~~h~--------~~V~~v~fsp~d~~~l~s-gs~Dg~V~IWdl~~~~~~  464 (493)
                      |+|++ +| +++..++.|++||+.+++++..+...        .....++|+| ++++++. .+.++.|.+||+.+++++
T Consensus       164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~  242 (300)
T TIGR03866       164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVL  242 (300)
T ss_pred             ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            99999 55 45557999999999999887766411        1235689999 8887544 456778999999998887


Q ss_pred             EecCCCCCeEEEEEccCCCEEEEeec
Q 011126          465 DYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       465 ~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ....+...+.+++|+|+|++|++++.
T Consensus       243 ~~~~~~~~~~~~~~~~~g~~l~~~~~  268 (300)
T TIGR03866       243 DYLLVGQRVWQLAFTPDEKYLLTTNG  268 (300)
T ss_pred             EEEEeCCCcceEEECCCCCEEEEEcC
Confidence            65455568999999999999987643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.69  E-value=3.3e-16  Score=158.31  Aligned_cols=203  Identities=21%  Similarity=0.300  Sum_probs=156.8

Q ss_pred             ccccCceeeeecccccceeccCCCeEEeeecCC-----eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE
Q 011126          225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMR-----RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL  299 (493)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg-----~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L  299 (493)
                      |+...++.+|-..+.+++.+|+|+++|++++..     .|++|+..       .....+.+.+|.-.|+.|+|||||+||
T Consensus       515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~-------~W~~~~~L~~HsLTVT~l~FSpdg~~L  587 (764)
T KOG1063|consen  515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA-------NWLQVQELEGHSLTVTRLAFSPDGRYL  587 (764)
T ss_pred             chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc-------chhhhheecccceEEEEEEECCCCcEE
Confidence            445556788888899999999999999988654     58999876       333455789999999999999999999


Q ss_pred             EEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeeccc
Q 011126          300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (493)
Q Consensus       300 asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (493)
                      ++.+.|.++.+|........ .+                                                         
T Consensus       588 LsvsRDRt~sl~~~~~~~~~-e~---------------------------------------------------------  609 (764)
T KOG1063|consen  588 LSVSRDRTVSLYEVQEDIKD-EF---------------------------------------------------------  609 (764)
T ss_pred             EEeecCceEEeeeeecccch-hh---------------------------------------------------------
Confidence            99999999999987432210 00                                                         


Q ss_pred             ceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC--cEEEE---ecCCCcEEEEEEccCCCC----EEEEEeC
Q 011126          380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRV---FSHNNYVTSVAFNPVDDN----YFISGSI  449 (493)
Q Consensus       380 ~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~--~~~~~---~~h~~~V~~v~fsp~d~~----~l~sgs~  449 (493)
                      .....+.|+.-|.+..|+|++ +++|+|.|++|++|.....  +.+..   +++...|+.++|.|.+.+    .++.|-.
T Consensus       610 ~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle  689 (764)
T KOG1063|consen  610 RFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLE  689 (764)
T ss_pred             hhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEec
Confidence            011246799999999999999 8999999999999998877  44444   358999999999986554    7888999


Q ss_pred             CCeEEEEeCCCC-e------------EEEecCCCCCeEEEEEccC----------CCEEEEeecCC
Q 011126          450 DGKVRIWEVRRC-Q------------VVDYTDIREIVSAVCYCPD----------GKVRQNSACNF  492 (493)
Q Consensus       450 Dg~V~IWdl~~~-~------------~~~~~~~~~~I~sv~~spd----------G~~l~s~s~d~  492 (493)
                      .|.|.+|....- +            .-....+...|+.++|.|.          ...|++++.|-
T Consensus       690 ~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~  755 (764)
T KOG1063|consen  690 KGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDE  755 (764)
T ss_pred             ccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccc
Confidence            999999996511 1            1123456678999999975          23457777654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.68  E-value=2.8e-15  Score=138.31  Aligned_cols=234  Identities=12%  Similarity=0.137  Sum_probs=157.8

Q ss_pred             CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeEEeeecCCeE
Q 011126          180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV  259 (493)
Q Consensus       180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V  259 (493)
                      ...++..+.+.++-     +|++........                  +.+..|...+-+++|+-+|..+++|+.|+.+
T Consensus        40 ~~~~~A~SWD~tVR-----~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~   96 (347)
T KOG0647|consen   40 DNLLAAGSWDGTVR-----IWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA   96 (347)
T ss_pred             CceEEecccCCceE-----EEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceEEeeccCCce
Confidence            44566667777776     777654210000                  1223345566679999999999999999999


Q ss_pred             EEEECCCccccccccccceeeecccCCEEEEEEccCCC--EEEEEECCCcEEEEecCCCeeeeeeeccCCC-----CceE
Q 011126          260 RVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTVRVWKVIEHERLDGFDVQDTD-----PSCL  332 (493)
Q Consensus       260 ~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~-----~~~~  332 (493)
                      ++||+...+.        +.+..|.++|.++.|-+...  .|+||+.|++|+.||.+....+.++..++..     ...+
T Consensus        97 k~wDL~S~Q~--------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm  168 (347)
T KOG0647|consen   97 KLWDLASGQV--------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPM  168 (347)
T ss_pred             EEEEccCCCe--------eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCce
Confidence            9999986642        24678999999999988655  8999999999999999998888888776531     1222


Q ss_pred             EEeeCCCCceeeeeccCccccc------------eee--------eecCCCceEEEcCCCceeecccceEEEecCCC---
Q 011126          333 YFTINHLSQLIPIDVDKEKIDK------------TKS--------LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS---  389 (493)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~------------~~~--------~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~---  389 (493)
                      .........+..+++.......            ...        .-++-.+.+.+.......  .+.-..|+.|..   
T Consensus       169 ~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~--~~~nFtFkCHR~~~~  246 (347)
T KOG0647|consen  169 AVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPN--PKDNFTFKCHRSTNS  246 (347)
T ss_pred             eEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCC--ccCceeEEEeccCCC
Confidence            2223333344444442211100            000        222333333332222110  023345666652   


Q ss_pred             ------CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEE
Q 011126          390 ------EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISG  447 (493)
Q Consensus       390 ------~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sg  447 (493)
                            .|++|+|+|.. .|+|++.||++.+||-.....++... |..+|+|..|+. +|.++|-+
T Consensus       247 ~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~-~G~ifaYA  311 (347)
T KOG0647|consen  247 VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNR-NGSIFAYA  311 (347)
T ss_pred             CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecC-CCCEEEEE
Confidence                  47789999975 99999999999999999888888865 999999999999 99988754

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.68  E-value=1.9e-14  Score=140.82  Aligned_cols=238  Identities=13%  Similarity=0.185  Sum_probs=165.2

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      .+.+++|.++|. +++|..+|.|.||+.....       ..+...+|.+.|.+++.-.+|.+| +|+.|..|..|| ..-
T Consensus       248 ~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~-------~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd-~~y  317 (626)
T KOG2106|consen  248 FVLCVTFLENGD-VITGDSGGNILIWSKGTNR-------ISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWD-DNY  317 (626)
T ss_pred             EEEEEEEcCCCC-EEeecCCceEEEEeCCCce-------EEeEeeecCCceEEEEEecCccEe-ecCccceEEecc-ccc
Confidence            355689999987 6799999999999985432       222344999999999999999755 599999999999 444


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCC--------ceeeeeccCc-----------------cccceeeeecCCCceEEEcCC
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLS--------QLIPIDVDKE-----------------KIDKTKSLRKSSDLTCVVLPP  371 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-----------------~~~~~~~~~~s~~~~~~~~~~  371 (493)
                      +.++..+.++.....-.+..+...        .++.......                 .......++.+.+..+.+|+.
T Consensus       318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~  397 (626)
T KOG2106|consen  318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND  397 (626)
T ss_pred             cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC
Confidence            444444444332222222222211        1111111100                 001122345566677777763


Q ss_pred             CceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC
Q 011126          372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG  451 (493)
Q Consensus       372 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg  451 (493)
                      .      ++..+ ..-..++.|+.|+|.|.++.|...|...|.|..+...+.....+.+++++.|+| +|.+||.|+.|+
T Consensus       398 ~------k~~wt-~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d~  469 (626)
T KOG2106|consen  398 H------KLEWT-KIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSP-DGAFLAVGSHDN  469 (626)
T ss_pred             C------ceeEE-EEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcC-CCCEEEEecCCC
Confidence            2      22221 123567889999999999999999999999999977777766789999999999 999999999999


Q ss_pred             eEEEEeCCCC-eEE-Ee-cCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          452 KVRIWEVRRC-QVV-DY-TDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       452 ~V~IWdl~~~-~~~-~~-~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      .|+||.+... ... .. .-+..+|+.+.|++|++++.+-+.|+
T Consensus       470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~  513 (626)
T KOG2106|consen  470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDY  513 (626)
T ss_pred             eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCce
Confidence            9999999754 222 22 22338999999999999999877654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=5e-17  Score=164.81  Aligned_cols=214  Identities=21%  Similarity=0.412  Sum_probs=181.3

Q ss_pred             cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeec
Q 011126          245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV  324 (493)
Q Consensus       245 p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~  324 (493)
                      |.+.+++.+...-.++||+.+             ++.+|...|.++..-..++.+++|+.|..+-+|.+.....+..+..
T Consensus         2 ~~~~~~m~~~~~t~Lr~~~~~-------------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~   68 (825)
T KOG0267|consen    2 PGMEFLMKTKRATKLRVWDTR-------------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTG   68 (825)
T ss_pred             Ccccccceeeeeeccccccch-------------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeec
Confidence            344455556666667778755             3567999999999877889999999999999999988877777888


Q ss_pred             cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE
Q 011126          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL  403 (493)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~  403 (493)
                      +..++.++.+....                .....+..++.+.+|+...    .+.++++.||...+..+.|+|-+ +.+
T Consensus        69 hespIeSl~f~~~E----------------~LlaagsasgtiK~wDlee----Ak~vrtLtgh~~~~~sv~f~P~~~~~a  128 (825)
T KOG0267|consen   69 HESPIESLTFDTSE----------------RLLAAGSASGTIKVWDLEE----AKIVRTLTGHLLNITSVDFHPYGEFFA  128 (825)
T ss_pred             cCCcceeeecCcch----------------hhhcccccCCceeeeehhh----hhhhhhhhccccCcceeeeccceEEec
Confidence            88877777764433                2334667788899998863    34577899999999999999999 889


Q ss_pred             EEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccC
Q 011126          404 SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPD  481 (493)
Q Consensus       404 sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spd  481 (493)
                      +|+.|.-+++||++...|.+.+. |...|.++.|+| +|+++++|+.|.+++|||+..|+++ .+..|...+.++.|+|.
T Consensus       129 ~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~  207 (825)
T KOG0267|consen  129 SGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL  207 (825)
T ss_pred             cccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCch
Confidence            99999999999999999999997 999999999999 9999999999999999999999998 47779999999999999


Q ss_pred             CCEEEEeecCC
Q 011126          482 GKVRQNSACNF  492 (493)
Q Consensus       482 G~~l~s~s~d~  492 (493)
                      .-.++.|+.|.
T Consensus       208 e~Lla~Gs~d~  218 (825)
T KOG0267|consen  208 EVLLAPGSSDR  218 (825)
T ss_pred             hhhhccCCCCc
Confidence            99999998875

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.67  E-value=1.2e-15  Score=140.14  Aligned_cols=205  Identities=21%  Similarity=0.365  Sum_probs=140.6

Q ss_pred             ecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeee-eccCccccceeee
Q 011126          281 LAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI-DVDKEKIDKTKSL  358 (493)
Q Consensus       281 ~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  358 (493)
                      ..|.+.|+++...+ .|+|+++|+.||.|.+||++.......-..- ....|+.-.......-+.+ ....-....-.+.
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li-~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI-AKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce-eheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            35899999999998 7899999999999999999765421100000 0001110000000000000 0000111222345


Q ss_pred             ecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC----eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEE
Q 011126          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS  433 (493)
Q Consensus       359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g----~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~  433 (493)
                      ..+-|..+.+|+......    ...|. ..+.|..-+|+|-.    ++|+|..|-.|++-|+.++.+.+++. |.+.|.+
T Consensus       119 ssSFDhtlKVWDtnTlQ~----a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQE----AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA  193 (397)
T ss_pred             cccccceEEEeeccccee----eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence            667788888998876443    22222 35677888888843    88999999999999999999999997 9999999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEeCCCC--e--EE-----------E-ecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          434 VAFNPVDDNYFISGSIDGKVRIWEVRRC--Q--VV-----------D-YTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg~V~IWdl~~~--~--~~-----------~-~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +.|+|...-.|++|+.||.|++||++..  -  ++           + -..|.+.|+.++|+.||.++++.+.|
T Consensus       194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd  267 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD  267 (397)
T ss_pred             EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence            9999966777899999999999999854  1  11           1 34577789999999999999877654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.66  E-value=3.8e-15  Score=154.27  Aligned_cols=241  Identities=20%  Similarity=0.177  Sum_probs=166.0

Q ss_pred             ecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC--EEEEEECCCcEEEE
Q 011126          235 IDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTVRVW  311 (493)
Q Consensus       235 ~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Lasgs~Dg~V~iW  311 (493)
                      ...+.++.|+|... ++|.|..+|.|.+||+.......... .......|..+|+.+.|..+..  -+++++.||.|..|
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            35566788998664 66778899999999998776542211 1112356899999999987544  49999999999999


Q ss_pred             ecCCCeeeeeeecc------------CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc-
Q 011126          312 KVIEHERLDGFDVQ------------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-  378 (493)
Q Consensus       312 dl~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-  378 (493)
                      ++..-.........            ......+.|.+...               ..++.++..|.+............ 
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p---------------~~FiVGTe~G~v~~~~r~g~~~~~~  385 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP---------------NHFIVGTEEGKVYKGCRKGYTPAPE  385 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCC---------------ceEEEEcCCcEEEEEeccCCccccc
Confidence            87544332111110            11122223322222               223445555555543333222222 


Q ss_pred             ---cceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECC-CCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCC
Q 011126          379 ---KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVG-IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG  451 (493)
Q Consensus       379 ---~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~-~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg  451 (493)
                         ++...+..|.+.|..+.++|=+  .+++++ |.+|+||... ...++..+. +.++|++++|+|.....|+++..||
T Consensus       386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G  464 (555)
T KOG1587|consen  386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG  464 (555)
T ss_pred             ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence               4455677899999999999987  555555 9999999988 556665554 7888999999999999999999999


Q ss_pred             eEEEEeCCCCe--EE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          452 KVRIWEVRRCQ--VV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       452 ~V~IWdl~~~~--~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      .|.|||+....  ++ ...-+....+.+.|+++|+.|++|...+
T Consensus       465 ~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G  508 (555)
T KOG1587|consen  465 NLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG  508 (555)
T ss_pred             ceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCC
Confidence            99999998543  22 3333466778889999999999997654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.66  E-value=6.2e-15  Score=140.40  Aligned_cols=199  Identities=18%  Similarity=0.233  Sum_probs=155.9

Q ss_pred             cCceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECC
Q 011126          228 LGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGED  305 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~D  305 (493)
                      ...+.+|...+-.++|.|.. ..||+|+.|.+|+||++..............++.+|+..|-.++|+|. .+.|++++.|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            34566777888889999855 578899999999999998777655555667789999999999999995 4588999999


Q ss_pred             CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      .+|.||++.+++.+.                                                              ++.
T Consensus       154 n~v~iWnv~tgeali--------------------------------------------------------------~l~  171 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALI--------------------------------------------------------------TLD  171 (472)
T ss_pred             ceEEEEeccCCceee--------------------------------------------------------------ecC
Confidence            999999998886421                                                              123


Q ss_pred             cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCC-cEEEEEEccCCCCEEEEEe---CCCeEEEEeCC
Q 011126          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNN-YVTSVAFNPVDDNYFISGS---IDGKVRIWEVR  459 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~-~V~~v~fsp~d~~~l~sgs---~Dg~V~IWdl~  459 (493)
                       |...|++++|+.+| +|+|.+.|+.|||||.++++.+..- .|.+ .-..+.|-. ++.++.||-   .+..+-+||..
T Consensus       172 -hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~  249 (472)
T KOG0303|consen  172 -HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPN  249 (472)
T ss_pred             -CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcc
Confidence             88999999999999 9999999999999999999998876 3543 445566766 788555553   36789999987


Q ss_pred             CCe---EEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          460 RCQ---VVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       460 ~~~---~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      +-+   .....+....|.---|.||.+++...|.
T Consensus       250 nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GK  283 (472)
T KOG0303|consen  250 NLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGK  283 (472)
T ss_pred             cccCcceeEEeccCCceEEeeecCCCCEEEEEec
Confidence            542   2244555666666678888888776664

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.66  E-value=5.9e-15  Score=148.39  Aligned_cols=223  Identities=15%  Similarity=0.230  Sum_probs=138.8

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      .+..++|.|||..|+.+. +.++.|||...+.       ..+++++|++.|++++|+.||+.+|+|+.|+.|.+|.-.-.
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~-------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT-------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE   85 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcc-------cccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence            566699999999888874 4579999987554       34578999999999999999999999999999999985432


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (493)
                      ..++  ..|...+.|+.|.+-......+ ....                .-+|.     ...+.+... .....|.+.+|
T Consensus        86 G~Lk--YSH~D~IQCMsFNP~~h~LasC-sLsd----------------FglWS-----~~qK~V~K~-kss~R~~~CsW  140 (1081)
T KOG1538|consen   86 GILK--YSHNDAIQCMSFNPITHQLASC-SLSD----------------FGLWS-----PEQKSVSKH-KSSSRIICCSW  140 (1081)
T ss_pred             ceee--eccCCeeeEeecCchHHHhhhc-chhh----------------ccccC-----hhhhhHHhh-hhheeEEEeee
Confidence            2211  2344456666665543221111 1000                00111     111111110 11234445555


Q ss_pred             eCCC-eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEE----------------------------------------
Q 011126          397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVT----------------------------------------  432 (493)
Q Consensus       397 sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~----------------------------------------  432 (493)
                      ..+| +|+.|-.+|+|.|-+-.....+..-.   .+.+|+                                        
T Consensus       141 tnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~  220 (1081)
T KOG1538|consen  141 TNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRA  220 (1081)
T ss_pred             cCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccccc
Confidence            5555 55555555555554322222111111   233344                                        


Q ss_pred             ------EEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          433 ------SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       433 ------~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                            |+++.| +|.|++.|+.|+.+++|--..-.+-........|+++...|++++++.|+.|++
T Consensus       221 L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGT  286 (1081)
T KOG1538|consen  221 LNFDPCCISYFT-NGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGT  286 (1081)
T ss_pred             CCCCchhheecc-CCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCe
Confidence                  455555 888999999999999985443333355667778999999999999999998874

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=2.4e-15  Score=139.49  Aligned_cols=144  Identities=22%  Similarity=0.394  Sum_probs=125.6

Q ss_pred             EEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceE
Q 011126          287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC  366 (493)
Q Consensus       287 I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  366 (493)
                      -.|+.|++.|.+||.|..||.|.|||+.+...                                                
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------------------------------------   57 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------------------------------------   57 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch------------------------------------------------
Confidence            78999999999999999999999999866431                                                


Q ss_pred             EEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccC------
Q 011126          367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV------  439 (493)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~------  439 (493)
                                    ...+.+|..+|++++||++| .|+|++.|..|.+||+..+.+++.+...++|+.++|+|.      
T Consensus        58 --------------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~v  123 (405)
T KOG1273|consen   58 --------------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCV  123 (405)
T ss_pred             --------------hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEE
Confidence                          23457899999999999999 999999999999999999999999888888888888764      


Q ss_pred             ----------------------------------------CCCEEEEEeCCCeEEEEeCCCCeEEEecCC--CCCeEEEE
Q 011126          440 ----------------------------------------DDNYFISGSIDGKVRIWEVRRCQVVDYTDI--REIVSAVC  477 (493)
Q Consensus       440 ----------------------------------------d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~--~~~I~sv~  477 (493)
                                                              .|+|+++|...|++.|+|..+.+++.....  ...|..+-
T Consensus       124 a~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~  203 (405)
T KOG1273|consen  124 ATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQII  203 (405)
T ss_pred             EEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEE
Confidence                                                    688999999999999999999998853322  35789999


Q ss_pred             EccCCCEEEEeecCC
Q 011126          478 YCPDGKVRQNSACNF  492 (493)
Q Consensus       478 ~spdG~~l~s~s~d~  492 (493)
                      ++..|+.|++-++|.
T Consensus       204 ~s~~g~~liiNtsDR  218 (405)
T KOG1273|consen  204 VSRKGRFLIINTSDR  218 (405)
T ss_pred             EeccCcEEEEecCCc
Confidence            999999999888774

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.65  E-value=4.7e-15  Score=137.95  Aligned_cols=223  Identities=19%  Similarity=0.324  Sum_probs=148.4

Q ss_pred             eccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccC---CEEEEEEccCCCEEEEEECCCcEEEEec-CCCee
Q 011126          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGEDGTVRVWKV-IEHER  318 (493)
Q Consensus       243 fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~Dg~V~iWdl-~~~~~  318 (493)
                      ..|+..++|+.+++.-|++||.-+.....+  +.   ...|..   +-.+++|+|||.+|++| ....|+|+|+ +.|..
T Consensus       119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraS--y~---~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~  192 (406)
T KOG2919|consen  119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRAS--YR---AYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD  192 (406)
T ss_pred             CCCccceeeeccccCceeeeeccccccccc--hh---hhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC
Confidence            357888999999999999999987653322  11   122333   34689999999999865 5678999999 44432


Q ss_pred             eeeeecc-------CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          319 LDGFDVQ-------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       319 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      ...+...       ...+.++++.+.....+. +....            ....++.++      ...|+..+.+|.+.|
T Consensus       193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a-~gsY~------------q~~giy~~~------~~~pl~llggh~gGv  253 (406)
T KOG2919|consen  193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLA-VGSYG------------QRVGIYNDD------GRRPLQLLGGHGGGV  253 (406)
T ss_pred             CcchhhhhcccccccceeeeeeccCCCCccee-eeccc------------ceeeeEecC------CCCceeeecccCCCe
Confidence            2211111       112233333333221111 11111            111111111      135788889999999


Q ss_pred             eEEEEeCCC-eEEEEe-CCCeEEEEECCCC-cEEEEec-CCC-cEEE--EEEccCCCCEEEEEeCCCeEEEEeCCC-Ce-
Q 011126          392 LDLSWSKNG-FLLSSS-ADKTVRLWQVGID-RCLRVFS-HNN-YVTS--VAFNPVDDNYFISGSIDGKVRIWEVRR-CQ-  462 (493)
Q Consensus       392 ~~l~~sp~g-~l~sgs-~Dg~V~lWd~~~~-~~~~~~~-h~~-~V~~--v~fsp~d~~~l~sgs~Dg~V~IWdl~~-~~-  462 (493)
                      +.|.|+++| .|.+|+ .|..|..||++.. .++..+. |.. .-..  ....| ++++|++|+.||.|++||+++ +. 
T Consensus       254 ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~  332 (406)
T KOG2919|consen  254 THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNE  332 (406)
T ss_pred             eeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCc
Confidence            999999999 888876 4788999999853 3444443 432 2233  45568 899999999999999999998 55 


Q ss_pred             EEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          463 VVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       463 ~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +..+..+...++.++++|-=.++++++..
T Consensus       333 ~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  333 VSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ccccccccccccceecCcccceeeeccCc
Confidence            44678888999999999998888887653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.65  E-value=1.5e-15  Score=151.90  Aligned_cols=192  Identities=15%  Similarity=0.282  Sum_probs=147.8

Q ss_pred             eeccCCCeEEe--eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCee
Q 011126          242 TLKPGDHELTL--GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       242 ~fsp~g~~las--gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~  318 (493)
                      -|+.+...+|+  .+.-|.|-||++....+.......  .+. ....|+.+.|.| |.+.||.++.||.|++|.+..+..
T Consensus       586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p--~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl  662 (1012)
T KOG1445|consen  586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMP--GLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL  662 (1012)
T ss_pred             ceeeccceEEEEecCCCceEEEEEcCCCCCCCccccc--ccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence            46666667766  556799999999865543221111  111 345799999999 888999999999999999876543


Q ss_pred             eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC
Q 011126          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (493)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  398 (493)
                      ....                                                       ..|...+.+|...|+.|.|+|
T Consensus       663 ~e~~-------------------------------------------------------~tPe~~lt~h~eKI~slRfHP  687 (1012)
T KOG1445|consen  663 PENE-------------------------------------------------------MTPEKILTIHGEKITSLRFHP  687 (1012)
T ss_pred             Cccc-------------------------------------------------------CCcceeeecccceEEEEEecc
Confidence            2111                                                       234556788999999999999


Q ss_pred             CC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE-EEe--cCCCCC
Q 011126          399 NG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV-VDY--TDIREI  472 (493)
Q Consensus       399 ~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~-~~~--~~~~~~  472 (493)
                      -.  .|++++.|-+|+|||+.+......+. |.+.|..++|+| +|+.+|+.+.||+|+||+.+.++. +..  ......
T Consensus       688 LAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR  766 (1012)
T KOG1445|consen  688 LAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTR  766 (1012)
T ss_pred             hhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCc
Confidence            75  99999999999999999987766664 999999999999 999999999999999999987643 321  112233


Q ss_pred             eEEEEEccCCCEEEEeecCC
Q 011126          473 VSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       473 I~sv~~spdG~~l~s~s~d~  492 (493)
                      --.|.|.-||+++++.|-|+
T Consensus       767 gARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  767 GARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             ceeEEEEecCcEEEEecccc
Confidence            45678889999999998776

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.65  E-value=6.4e-15  Score=149.20  Aligned_cols=228  Identities=21%  Similarity=0.259  Sum_probs=170.2

Q ss_pred             eEEeeecCCeEEEEECCCccc-------ccc-----ccccce------------------eeecccCCEEEEEEccCCCE
Q 011126          249 ELTLGQRMRRVRVHPVKKQSR-------ELS-----SLYTGQ------------------EFLAHEGSILTMKFSLDGQY  298 (493)
Q Consensus       249 ~lasgs~dg~V~vwd~~~~~~-------~~~-----~~~~~~------------------~l~~H~~~I~~l~fspdg~~  298 (493)
                      .+++++.|++|++|++.....       .++     ..+...                  ...+..-.|.+++.+|+|++
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            488999999999999875211       000     000000                  11223456999999999999


Q ss_pred             EEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126          299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (493)
Q Consensus       299 Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (493)
                      ||+|..-|++|||++.+-+....+..|+..+.|+.++...             +.......++.+..+.+++.+..   .
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~-------------~~~kLLASasrdRlIHV~Dv~rn---y  537 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV-------------LTNKLLASASRDRLIHVYDVKRN---Y  537 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhheecccceeEEEeecCch-------------hhhHhhhhccCCceEEEEecccc---c
Confidence            9999999999999999888877888877777666654332             23344456778888888877532   2


Q ss_pred             cceEEEecCCCCEeEEEEeCCC---eEEEEeCCCeEEEEECCCCcEEEEec------CCCcEEEEEEccCCCCEEEEEeC
Q 011126          379 KPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSI  449 (493)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~g---~l~sgs~Dg~V~lWd~~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~  449 (493)
                      .+++++.+|...|+++.|.-.|   .+++++.|+.|.+--.+...-...|.      ....++.++..| ...++++++.
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQ  616 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQ  616 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEec
Confidence            3477889999999999998876   89999999988654333222222221      235688999999 9999999999


Q ss_pred             CCeEEEEeCCCCeEEE-e---cCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          450 DGKVRIWEVRRCQVVD-Y---TDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       450 Dg~V~IWdl~~~~~~~-~---~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      |..|+|||+..++.++ +   .+|.+....+...|.|.|++++.+|++
T Consensus       617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt  664 (1080)
T KOG1408|consen  617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT  664 (1080)
T ss_pred             ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc
Confidence            9999999999998775 2   456677888999999999999999874

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=5.1e-15  Score=147.50  Aligned_cols=212  Identities=19%  Similarity=0.349  Sum_probs=163.4

Q ss_pred             eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceee
Q 011126          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (493)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (493)
                      ..+.+|++.|.+|...|.|.+|++|+.||+||||.+.++.++.++.... .+.+++|++.....+++++...........
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~  472 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGECVLIVNPI  472 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence            3578999999999999999999999999999999999999999887754 688899998888877776655441100000


Q ss_pred             --------------e-e---cCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCC---CeEEEEE
Q 011126          358 --------------L-R---KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQ  415 (493)
Q Consensus       358 --------------~-~---~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~D---g~V~lWd  415 (493)
                                    . .   ...+..++.|........++-++....|...|..|.|+..| ||++...+   ..|.|++
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ  552 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ  552 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence                          0 0   22334555665543333344466777899999999999999 99887654   6799999


Q ss_pred             CCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          416 VGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       416 ~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +.....+..|. ..+.|.++.|+| ...+|+.++ -..|+|||+..+.++. +......|.+++.+|.|..|++++-|+
T Consensus       553 LSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~  629 (733)
T KOG0650|consen  553 LSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK  629 (733)
T ss_pred             cccccccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence            99888777775 678899999999 555666555 4469999999877763 556667899999999999999998764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.65  E-value=1.3e-15  Score=148.44  Aligned_cols=230  Identities=15%  Similarity=0.182  Sum_probs=157.0

Q ss_pred             cccceeccCCCe-EEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126          238 HGSATLKPGDHE-LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       238 ~~~~~fsp~g~~-lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      +.++.|.....+ +|+-+.|..|++|.-.+...+..   ......+.  .-.|++......|+++||..+.|+|||+...
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp---~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k  111 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVP---RVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK  111 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccc---eeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH
Confidence            344666665542 23345788899997655432221   11112222  2233333334589999999999999999866


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC-CCCEeEEE
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDLS  395 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~  395 (493)
                      .+.+.++.|...+.++.+......                +...+..+.+.+.......    ....|... ...|.-|.
T Consensus       112 l~hr~lkdh~stvt~v~YN~~Dey----------------iAsvs~gGdiiih~~~t~~----~tt~f~~~sgqsvRll~  171 (673)
T KOG4378|consen  112 LIHRFLKDHQSTVTYVDYNNTDEY----------------IASVSDGGDIIIHGTKTKQ----KTTTFTIDSGQSVRLLR  171 (673)
T ss_pred             HHhhhccCCcceeEEEEecCCcce----------------eEEeccCCcEEEEecccCc----cccceecCCCCeEEEee
Confidence            666667777665555554333211                1122222333333222111    11223322 33456899


Q ss_pred             EeCCC--eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC
Q 011126          396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE  471 (493)
Q Consensus       396 ~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~  471 (493)
                      |+|..  +|.+++.+|.|.|||+....++..+.  |..+...|+|+|.+..+|++.+.|.+|.+||++..+.........
T Consensus       172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~  251 (673)
T KOG4378|consen  172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH  251 (673)
T ss_pred             cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC
Confidence            99987  88899999999999999988888775  999999999999999999999999999999999888777666777


Q ss_pred             CeEEEEEccCCCEEEEeecCC
Q 011126          472 IVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       472 ~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +.++++|.++|.+|++|...+
T Consensus       252 Plstvaf~~~G~~L~aG~s~G  272 (673)
T KOG4378|consen  252 PLSTVAFSECGTYLCAGNSKG  272 (673)
T ss_pred             CcceeeecCCceEEEeecCCc
Confidence            899999999999999997653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=3.3e-15  Score=143.72  Aligned_cols=202  Identities=22%  Similarity=0.290  Sum_probs=142.0

Q ss_pred             ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~  318 (493)
                      ..++|+++|..|++|+.||.+|||++......+       ++.+|...|.+|.|+|||++|++-+.| ..+||++.++..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-------~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-------EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh-------hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence            348999999999999999999999987544332       457799999999999999999999999 899999999965


Q ss_pred             eeeeeccCCC--CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc-cceEEEecCCCCEeEEE
Q 011126          319 LDGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       319 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~  395 (493)
                      +........+  ...+.|........+.+..           .....+.+..++...|.... -+..+...-...|++++
T Consensus       220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa-----------~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~  288 (398)
T KOG0771|consen  220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAA-----------SQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA  288 (398)
T ss_pred             hhhcCCcccchhhhhceecccCCCceEEEEE-----------ecCCCCceeEEEeeeeccccccchhhhhhccCcceeEE
Confidence            5444321111  1122222222111111111           11111122222222222110 01111222345799999


Q ss_pred             EeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      .+++| +++.|+.||.|.|++..+-++++..+  |...|+.+.|+| +.+++++-+.|..+.|..+.-
T Consensus       289 VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  289 VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence            99999 99999999999999999999988886  999999999999 999999999999999887764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.64  E-value=3.9e-15  Score=138.83  Aligned_cols=179  Identities=26%  Similarity=0.464  Sum_probs=136.2

Q ss_pred             CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (493)
Q Consensus       247 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~  325 (493)
                      ..++|+|+.-|.|+|.|+.+.+       ....+.+|.+.|+.|+|.|+ .++|++|+.|.+||+|++++..++..+-  
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~-------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG--  175 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQ-------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG--  175 (385)
T ss_pred             CeeEEeecceeEEEEEecchhh-------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec--
Confidence            5689999999999999987554       33457899999999999995 4689999999999999999887654332  


Q ss_pred             CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEE
Q 011126          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS  404 (493)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~s  404 (493)
                                                                               -..||...|.++.|+++| +|++
T Consensus       176 ---------------------------------------------------------G~egHrdeVLSvD~~~~gd~i~S  198 (385)
T KOG1034|consen  176 ---------------------------------------------------------GVEGHRDEVLSVDFSLDGDRIAS  198 (385)
T ss_pred             ---------------------------------------------------------ccccccCcEEEEEEcCCCCeeec
Confidence                                                                     146799999999999999 9999


Q ss_pred             EeCCCeEEEEECCCCcE-------------------------EEEec----CCCcEEE----------------------
Q 011126          405 SSADKTVRLWQVGIDRC-------------------------LRVFS----HNNYVTS----------------------  433 (493)
Q Consensus       405 gs~Dg~V~lWd~~~~~~-------------------------~~~~~----h~~~V~~----------------------  433 (493)
                      +++|.+|++|++...+.                         +..|.    |.++|-|                      
T Consensus       199 cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  199 CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKP  278 (385)
T ss_pred             cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEec
Confidence            99999999999862210                         00000    3332222                      


Q ss_pred             ----------------------------------EEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-----EecCCCCCeE
Q 011126          434 ----------------------------------VAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVS  474 (493)
Q Consensus       434 ----------------------------------v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-----~~~~~~~~I~  474 (493)
                                                        .+|+| -.++||.|...|+|++||++.....     ........|.
T Consensus       279 gkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVR  357 (385)
T KOG1034|consen  279 GKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVR  357 (385)
T ss_pred             chhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceee
Confidence                                              23445 5678999999999999999977653     2233456799


Q ss_pred             EEEEccCCCEEEEeecCC
Q 011126          475 AVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       475 sv~~spdG~~l~s~s~d~  492 (493)
                      ..+|+-||..|+....|.
T Consensus       358 Q~sfS~dgs~lv~vcdd~  375 (385)
T KOG1034|consen  358 QTSFSRDGSILVLVCDDG  375 (385)
T ss_pred             eeeecccCcEEEEEeCCC
Confidence            999999999998777654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=3.3e-14  Score=127.63  Aligned_cols=216  Identities=21%  Similarity=0.344  Sum_probs=149.7

Q ss_pred             ccceeccCCCeEEeeecCCeEEEEECCCcccc---ccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRE---LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~---~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~  315 (493)
                      -.-+++|.+++|++|..+|.|.+..++.....   ...-...-..++|.++|+.|+|.  ..+|++|+ ||.|+-|...+
T Consensus        14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E   90 (325)
T KOG0649|consen   14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNE   90 (325)
T ss_pred             HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehh
Confidence            34678999999999999999999988642211   11111112358999999999998  44777776 59999998755


Q ss_pred             Ceeee------eeecc-------CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126          316 HERLD------GFDVQ-------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (493)
Q Consensus       316 ~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (493)
                      .....      ....+       -..+..+...+...                ..+....|..++.|+....++    ..
T Consensus        91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en----------------Si~~AgGD~~~y~~dlE~G~i----~r  150 (325)
T KOG0649|consen   91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN----------------SILFAGGDGVIYQVDLEDGRI----QR  150 (325)
T ss_pred             hhhhccchhhhhhcCccccCcccCCccceeEeccCCC----------------cEEEecCCeEEEEEEecCCEE----EE
Confidence            43211      11110       01112222221111                122334677777777665444    67


Q ss_pred             EEecCCCCEeEEEE-eCCCeEEEEeCCCeEEEEECCCCcEEEEec-----------CCCcEEEEEEccCCCCEEEEEeCC
Q 011126          383 EFQGHSSEVLDLSW-SKNGFLLSSSADKTVRLWQVGIDRCLRVFS-----------HNNYVTSVAFNPVDDNYFISGSID  450 (493)
Q Consensus       383 ~~~~h~~~V~~l~~-sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-----------h~~~V~~v~fsp~d~~~l~sgs~D  450 (493)
                      +++||+..|.++.- +.++.+++|+.||++||||.++++++..+.           ....|.+++-   +..+|+.|+ .
T Consensus       151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-G  226 (325)
T KOG0649|consen  151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-G  226 (325)
T ss_pred             EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-C
Confidence            89999999999988 445599999999999999999999998885           2345677776   457777765 5


Q ss_pred             CeEEEEeCCCCeEEEecCCCCCeEEEEEccC
Q 011126          451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPD  481 (493)
Q Consensus       451 g~V~IWdl~~~~~~~~~~~~~~I~sv~~spd  481 (493)
                      .++.+|.++..+.......+.++..+.|-.|
T Consensus       227 p~lslwhLrsse~t~vfpipa~v~~v~F~~d  257 (325)
T KOG0649|consen  227 PKLSLWHLRSSESTCVFPIPARVHLVDFVDD  257 (325)
T ss_pred             CceeEEeccCCCceEEEecccceeEeeeecc
Confidence            5799999999998888888888888888655

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.64  E-value=2.8e-15  Score=147.51  Aligned_cols=201  Identities=19%  Similarity=0.299  Sum_probs=150.3

Q ss_pred             CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCC
Q 011126          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT  327 (493)
Q Consensus       248 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~  327 (493)
                      ..++.++.||++.|.+-...-        ...+.+|.++|.+-.|+|||.-|+++|+||.|+||. .+|....++.....
T Consensus        76 d~~~i~s~DGkf~il~k~~rV--------E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~  146 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSARV--------ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEE  146 (737)
T ss_pred             ceEEEEcCCceEEEecccchh--------hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCc
Confidence            467888899999998754221        224678999999999999999999999999999998 46666666666677


Q ss_pred             CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEe
Q 011126          328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS  406 (493)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs  406 (493)
                      .+.|+.|.++..+.+++..                 +.+.+-+..   . ...+...+.|.+-|.++.|++.. ++++|+
T Consensus       147 ~v~c~~W~p~S~~vl~c~g-----------------~h~~IKpL~---~-n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG  205 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFCQG-----------------GHISIKPLA---A-NSKIIRWRAHDGLVLSLSWSTQSNIIASGG  205 (737)
T ss_pred             eeEEEEECCCCCceEEecC-----------------CeEEEeecc---c-ccceeEEeccCcEEEEeecCccccceeecC
Confidence            7888888887766554321                 111111111   1 11244568899999999999988 999999


Q ss_pred             CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEE
Q 011126          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQ  486 (493)
Q Consensus       407 ~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~  486 (493)
                      .|-..+|||.........-.|..+|++++|+| + ..++.++.. ++|+          .....+.|..++|+|||..++
T Consensus       206 ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~n-t~R~----------~~p~~GSifnlsWS~DGTQ~a  272 (737)
T KOG1524|consen  206 EDFRFKIWDAQGANLFTSAAEEYAITSVAFNP-E-KDYLLWSYN-TARF----------SSPRVGSIFNLSWSADGTQAT  272 (737)
T ss_pred             CceeEEeecccCcccccCChhccceeeeeecc-c-cceeeeeee-eeee----------cCCCccceEEEEEcCCCceee
Confidence            99999999987665555556999999999999 6 667766654 3441          122346789999999999998


Q ss_pred             EeecC
Q 011126          487 NSACN  491 (493)
Q Consensus       487 s~s~d  491 (493)
                      +|.+.
T Consensus       273 ~gt~~  277 (737)
T KOG1524|consen  273 CGTST  277 (737)
T ss_pred             ccccC
Confidence            88764

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.63  E-value=1.8e-14  Score=148.49  Aligned_cols=251  Identities=16%  Similarity=0.244  Sum_probs=177.3

Q ss_pred             ecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126          235 IDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       235 ~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl  313 (493)
                      ..++..++|..||+ .+|+|+..|.+.+||+++....-      +...+|.+.|..+.|.|....|++++.|..+++|=.
T Consensus       244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~------v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf  317 (910)
T KOG1539|consen  244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN------VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF  317 (910)
T ss_pred             ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeee------eeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence            46788899999997 56677788999999998765332      234589999999999999999999999999999966


Q ss_pred             CCCe----eeeeeeccCCCCceEEEeeCCCCceeeeeccC----------------------------------------
Q 011126          314 IEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK----------------------------------------  349 (493)
Q Consensus       314 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------  349 (493)
                      .++.    .++.-..|..++.|+.+.......+.....+.                                        
T Consensus       318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~  397 (910)
T KOG1539|consen  318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP  397 (910)
T ss_pred             eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence            5432    23333445555555554322211111111000                                        


Q ss_pred             --------cccc--ceeeeecCCCceEEEcCCC-------------------------------------------ceee
Q 011126          350 --------EKID--KTKSLRKSSDLTCVVLPPK-------------------------------------------VFRL  376 (493)
Q Consensus       350 --------~~~~--~~~~~~~s~~~~~~~~~~~-------------------------------------------~~~~  376 (493)
                              ....  .........+..+..|+.+                                           .+++
T Consensus       398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm  477 (910)
T KOG1539|consen  398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM  477 (910)
T ss_pred             ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence                    0000  0000000111111111110                                           1111


Q ss_pred             cccc-eEEE---ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC
Q 011126          377 LEKP-LHEF---QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG  451 (493)
Q Consensus       377 ~~~~-~~~~---~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg  451 (493)
                      +... ...+   ..|.++|+.++....+ .+++++.+|.+++||......+..+.....++++..+. ...+++.+..|-
T Consensus       478 QSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr-~s~l~a~~~ddf  556 (910)
T KOG1539|consen  478 QSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHR-VSDLLAIALDDF  556 (910)
T ss_pred             ccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeee-hhhhhhhhcCce
Confidence            1111 1223   4789999999998877 99999999999999999999999999889999999998 888999999999


Q ss_pred             eEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          452 KVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       452 ~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      .|+++|+.+.+++. +.+|.+.|++++|||||++|++++-|.
T Consensus       557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~  598 (910)
T KOG1539|consen  557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS  598 (910)
T ss_pred             eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC
Confidence            99999999999985 788999999999999999999998775

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.2e-14  Score=146.82  Aligned_cols=200  Identities=16%  Similarity=0.260  Sum_probs=158.6

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+.+....+.+++.+|.+..++.|+.||.+..++.....-++...     |.-.++.|.++.|+|++..|++|+.||.|+
T Consensus       105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~-----l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir  179 (691)
T KOG2048|consen  105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS-----LMRQKSRVLSLSWNPTGTKIAGGSIDGVIR  179 (691)
T ss_pred             EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee-----cccccceEEEEEecCCccEEEecccCceEE
Confidence            445555677789999999999999999988888877665444433     333578999999999999999999999999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHS  388 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~  388 (493)
                      +||+.++..+......                                                       +..+ ++..
T Consensus       180 iwd~~~~~t~~~~~~~-------------------------------------------------------~d~l~k~~~  204 (691)
T KOG2048|consen  180 IWDVKSGQTLHIITMQ-------------------------------------------------------LDRLSKREP  204 (691)
T ss_pred             EEEcCCCceEEEeeec-------------------------------------------------------ccccccCCc
Confidence            9999887754321110                                                       0001 1123


Q ss_pred             CCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE--E-
Q 011126          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--V-  464 (493)
Q Consensus       389 ~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~--~-  464 (493)
                      .-|.++.|-.++.|++|..-|+|.+||...+..+..+. |...|.|++..+ +++++.+++.|++|..+...+.+.  + 
T Consensus       205 ~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~d~vfsaGvd~~ii~~~~~~~~~~wv~  283 (691)
T KOG2048|consen  205 TIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NEDRVFSAGVDPKIIQYSLTTNKSEWVI  283 (691)
T ss_pred             eEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CCCeEEEccCCCceEEEEecCCccceee
Confidence            34677888888899999999999999999999999887 999999999999 899999999999999999887633  2 


Q ss_pred             --EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          465 --DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       465 --~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                        ....|...|.+++..++  .+++||.|+
T Consensus       284 ~~~r~~h~hdvrs~av~~~--~l~sgG~d~  311 (691)
T KOG2048|consen  284 NSRRDLHAHDVRSMAVIEN--ALISGGRDF  311 (691)
T ss_pred             eccccCCcccceeeeeecc--eEEecceee
Confidence              35667888999999888  777887765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.63  E-value=1.5e-13  Score=134.35  Aligned_cols=212  Identities=17%  Similarity=0.213  Sum_probs=143.1

Q ss_pred             cceeccCCCeEEe-eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC-cEEEEecCCCe
Q 011126          240 SATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKVIEHE  317 (493)
Q Consensus       240 ~~~fsp~g~~las-gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-~V~iWdl~~~~  317 (493)
                      .++|+|+++.+++ +..++.|++||+..... +      ..+. +...+..++|+|+|++|+++..++ .+.+||..+++
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~------~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~  148 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKV-L------AEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE  148 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeE-E------eEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence            4789999997765 45689999999875331 1      1222 233468899999999999988775 56778998877


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-----C--CCC
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-----H--SSE  390 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-----h--~~~  390 (493)
                      ....+... ..+..+.+.+++.  .+             .+....++.+.+|+......    +..+..     +  ...
T Consensus       149 ~~~~~~~~-~~~~~~~~s~dg~--~l-------------~~~~~~~~~v~i~d~~~~~~----~~~~~~~~~~~~~~~~~  208 (300)
T TIGR03866       149 IVDNVLVD-QRPRFAEFTADGK--EL-------------WVSSEIGGTVSVIDVATRKV----IKKITFEIPGVHPEAVQ  208 (300)
T ss_pred             EEEEEEcC-CCccEEEECCCCC--EE-------------EEEcCCCCEEEEEEcCccee----eeeeeecccccccccCC
Confidence            65544322 2233334433321  11             12223345666666654322    122211     1  112


Q ss_pred             EeEEEEeCCC-e-EEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeCCCCeEEEec
Q 011126          391 VLDLSWSKNG-F-LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVVDYT  467 (493)
Q Consensus       391 V~~l~~sp~g-~-l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl~~~~~~~~~  467 (493)
                      ...++|+|++ + +++.+.++.|.+||+.+++.+..+.+...+.+++|+| ++.+|+++ ..+|+|+|||+.+++++...
T Consensus       209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            3568899998 4 4455667789999999988887777777899999999 99988876 56899999999999987644


Q ss_pred             CCCCCeEEEEEcc
Q 011126          468 DIREIVSAVCYCP  480 (493)
Q Consensus       468 ~~~~~I~sv~~sp  480 (493)
                      ......+.++++|
T Consensus       288 ~~~~~~~~~~~~~  300 (300)
T TIGR03866       288 KVGRLPWGVVVRP  300 (300)
T ss_pred             EcccccceeEeCC
Confidence            4556778888876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=4.6e-15  Score=147.14  Aligned_cols=221  Identities=17%  Similarity=0.246  Sum_probs=153.1

Q ss_pred             ccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccc---cccceeeecccCCEEEEEEccCCCEEEE
Q 011126          225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS---LYTGQEFLAHEGSILTMKFSLDGQYLAS  301 (493)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~---~~~~~~l~~H~~~I~~l~fspdg~~Las  301 (493)
                      .+++-+...|...|-|+++.+++..+.+|+.||+|+.|++.........   ......+.||++.|+.+++++...+|++
T Consensus       334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls  413 (577)
T KOG0642|consen  334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS  413 (577)
T ss_pred             eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence            3445567788888999999999999999999999999988744333221   2334568999999999999999999999


Q ss_pred             EECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126          302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (493)
Q Consensus       302 gs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (493)
                      ++.||+||+|+...... .++...........+..........+.                +.....++...+.... .+
T Consensus       414 cs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~----------------s~~~~~~~~~~~ev~s-~~  475 (577)
T KOG0642|consen  414 CSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLA----------------SFRFGYTSIDDMEVVS-DL  475 (577)
T ss_pred             ecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhh----------------hcccccccchhhhhhh-he
Confidence            99999999999866554 333332222222222111111000000                0000011111000000 00


Q ss_pred             EEEe-------cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCe
Q 011126          382 HEFQ-------GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK  452 (493)
Q Consensus       382 ~~~~-------~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~  452 (493)
                      ..+.       .-...+.-+.++|++ +.+++..|+.|+++|..++..++... |...++++++.| ++-+|++|+.|+.
T Consensus       476 ~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~s  554 (577)
T KOG0642|consen  476 LIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGS  554 (577)
T ss_pred             eeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCce
Confidence            0010       112457778899988 99999999999999999999988775 999999999999 9999999999999


Q ss_pred             EEEEeCCCCeEE
Q 011126          453 VRIWEVRRCQVV  464 (493)
Q Consensus       453 V~IWdl~~~~~~  464 (493)
                      |++|.+....++
T Consensus       555 v~l~kld~k~~~  566 (577)
T KOG0642|consen  555 VRLWKLDVKTCV  566 (577)
T ss_pred             eehhhccchhee
Confidence            999999876655

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.8e-15  Score=161.03  Aligned_cols=215  Identities=20%  Similarity=0.321  Sum_probs=168.1

Q ss_pred             cCceeeeecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECC
Q 011126          228 LGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGED  305 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~D  305 (493)
                      +.....|...|..+.|++... +||+|+.+|.|.|||+.+....+...     -+.-.+.|.+++|+. ..+.|++++.+
T Consensus       109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~s  183 (1049)
T KOG0307|consen  109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPS  183 (1049)
T ss_pred             HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCC
Confidence            344555667777799999877 99999999999999999865544322     233567899999987 45688999999


Q ss_pred             CcEEEEecCCCeeeeeeeccCCC--CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126          306 GTVRVWKVIEHERLDGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (493)
                      |.+.|||++..+.+-.+......  ...+.|.+++...++...-+            .....+.+|+.+.   ...|++.
T Consensus       184 g~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d------------d~~PviqlWDlR~---assP~k~  248 (1049)
T KOG0307|consen  184 GRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD------------DSAPVIQLWDLRF---ASSPLKI  248 (1049)
T ss_pred             CCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCC------------CCCceeEeecccc---cCCchhh
Confidence            99999999988776666554442  34566666665554433221            1223455566543   3467888


Q ss_pred             EecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       384 ~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      +.+|...|.+|.|++.+  +|++++.|+.|.+|+..+++.+..+. ..+.+..+.|+|.+...|+..+.||+|.|+.+.+
T Consensus       249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence            89999999999999987  99999999999999999999999997 6789999999998888999999999999999986


Q ss_pred             Ce
Q 011126          461 CQ  462 (493)
Q Consensus       461 ~~  462 (493)
                      ..
T Consensus       329 ~~  330 (1049)
T KOG0307|consen  329 TD  330 (1049)
T ss_pred             CC
Confidence            54

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.60  E-value=3.2e-14  Score=142.90  Aligned_cols=229  Identities=15%  Similarity=0.219  Sum_probs=157.4

Q ss_pred             CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeee--ee
Q 011126          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG--FD  323 (493)
Q Consensus       246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~--~~  323 (493)
                      ..+.||.+..+|.|.++|.....-.+.. .......+|...|..++|.|...+|++++.|.++++||+.+.++...  +.
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr~ee-~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~  141 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFRLEE-RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL  141 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcchhh-hhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence            3467899999999999998765433111 11234678999999999999666899999999999999999887766  55


Q ss_pred             ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeec-----------------------ccc
Q 011126          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-----------------------EKP  380 (493)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-----------------------~~~  380 (493)
                      .|...+..++|.+...               ..+..++.|+.+++|+.+.....                       .+.
T Consensus       142 GH~~SvkS~cf~~~n~---------------~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr  206 (720)
T KOG0321|consen  142 GHTGSVKSECFMPTNP---------------AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR  206 (720)
T ss_pred             ccccccchhhhccCCC---------------cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence            6655555555544432               23456677777777766432210                       012


Q ss_pred             eEEEecCCCCEeE---EEEeCCC-eEEEEeC-CCeEEEEECCCCcEEEEec---------C---CCcEEEEEEccCCCCE
Q 011126          381 LHEFQGHSSEVLD---LSWSKNG-FLLSSSA-DKTVRLWQVGIDRCLRVFS---------H---NNYVTSVAFNPVDDNY  443 (493)
Q Consensus       381 ~~~~~~h~~~V~~---l~~sp~g-~l~sgs~-Dg~V~lWd~~~~~~~~~~~---------h---~~~V~~v~fsp~d~~~  443 (493)
                      ++....|...|..   +-+..|. .||+++. |+.|+|||++...+.....         |   .-.++++.... .|.+
T Consensus       207 ~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~  285 (720)
T KOG0321|consen  207 IRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTY  285 (720)
T ss_pred             ccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCe
Confidence            2333456666655   5555665 8898887 9999999999765543321         3   34577888887 7788


Q ss_pred             EEEEeCCCeEEEEeCCCCeEE--E-ecCCCC--CeEEEEEccCCCEEEEeecC
Q 011126          444 FISGSIDGKVRIWEVRRCQVV--D-YTDIRE--IVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       444 l~sgs~Dg~V~IWdl~~~~~~--~-~~~~~~--~I~sv~~spdG~~l~s~s~d  491 (493)
                      |.+.+.|+.|++||+.+..+-  . +.++..  .-..-+.+||+.++++|+.|
T Consensus       286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd  338 (720)
T KOG0321|consen  286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSD  338 (720)
T ss_pred             EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCC
Confidence            777777999999999875432  1 222211  22334679999999999876

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.59  E-value=1.5e-15  Score=156.12  Aligned_cols=234  Identities=17%  Similarity=0.272  Sum_probs=172.8

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (493)
                      +..+.+|.++|.|+.|...|.++++|+.|..|+||...+..       +.....||.+.|+.++.+.+..++++++.|..
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-------~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-------CLASCRGHSGDITDLAVSSNNTMIAAASNDKV  255 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-------hhccCCCCccccchhccchhhhhhhhcccCce
Confidence            34577899999999999999999999999999999976443       33357899999999999999999999999999


Q ss_pred             EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee---------cc
Q 011126          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL---------LE  378 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~---------~~  378 (493)
                      |++|.+..+..+..+..+...++.+.|.+-.                    ..+.+++|.+|+.+..-.         .+
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~--------------------sss~dgt~~~wd~r~~~~~y~prp~~~~~  315 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--------------------SSSDDGTCRIWDARLEPRIYVPRPLKFTE  315 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCccc--------------------cCCCCCceEeccccccccccCCCCCCccc
Confidence            9999999999999999999888888876654                    223444555554430000         00


Q ss_pred             c-ce----------------EEEecCCCCEeEEEEeCCC------------eEEEEeCCCeEEEEECCCCcEEEEec-CC
Q 011126          379 K-PL----------------HEFQGHSSEVLDLSWSKNG------------FLLSSSADKTVRLWQVGIDRCLRVFS-HN  428 (493)
Q Consensus       379 ~-~~----------------~~~~~h~~~V~~l~~sp~g------------~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~  428 (493)
                      + .+                .......-.+.+++|...+            +.+++-.+..+.+|++.++..++... |.
T Consensus       316 ~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs  395 (1113)
T KOG0644|consen  316 KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS  395 (1113)
T ss_pred             ccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc
Confidence            0 00                0000011122233343333            33444456678899999998888775 99


Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEe
Q 011126          429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       429 ~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      +++..+.++|.+.++..+++.||+..|||+-.+..++ +......+..-.|++||+.++..
T Consensus       396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls  456 (1113)
T KOG0644|consen  396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS  456 (1113)
T ss_pred             cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecC
Confidence            9999999999888999999999999999999887663 22335566777899999887754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.59  E-value=2.8e-14  Score=130.97  Aligned_cols=199  Identities=19%  Similarity=0.288  Sum_probs=142.9

Q ss_pred             ecccccceeccCCC-eEEeeecC-------CeEEEEECCCcccc--ccccccceeee-cccCCEEEEEEccCCCEEEEEE
Q 011126          235 IDRHGSATLKPGDH-ELTLGQRM-------RRVRVHPVKKQSRE--LSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGG  303 (493)
Q Consensus       235 ~~~~~~~~fsp~g~-~lasgs~d-------g~V~vwd~~~~~~~--~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs  303 (493)
                      .+.+..++-+|-.. .|++...+       ..+.||++......  ..++.+...+. .|-+.|.|+.|.|++..||+-.
T Consensus        63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~  142 (370)
T KOG1007|consen   63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD  142 (370)
T ss_pred             CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence            34455566677654 44444331       34789998765443  22333333343 4667999999999999998876


Q ss_pred             CCCcEEEEecCCCeee-eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126          304 EDGTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (493)
Q Consensus       304 ~Dg~V~iWdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (493)
                       |..|.+|++..+..+ ..+...                                                         
T Consensus       143 -dn~i~l~~l~ess~~vaev~ss---------------------------------------------------------  164 (370)
T KOG1007|consen  143 -DNNIVLWSLDESSKIVAEVLSS---------------------------------------------------------  164 (370)
T ss_pred             -cCceEEEEcccCcchheeeccc---------------------------------------------------------
Confidence             778999999776542 111110                                                         


Q ss_pred             EEecCCCCEeEEEEeCC--CeEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126          383 EFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       383 ~~~~h~~~V~~l~~sp~--g~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl  458 (493)
                      .-.+|....++-+|+|.  +..+....|+++..||+++..+...+.  |...|..+.|+|....+|++|+.||.|+|||.
T Consensus       165 ~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~  244 (370)
T KOG1007|consen  165 ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDT  244 (370)
T ss_pred             ccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEec
Confidence            01124556677889993  445555668999999999998888875  99999999999966678999999999999999


Q ss_pred             CCCe--EEEecCCCCCeEEEEEccCC-CEEEEeecC
Q 011126          459 RRCQ--VVDYTDIREIVSAVCYCPDG-KVRQNSACN  491 (493)
Q Consensus       459 ~~~~--~~~~~~~~~~I~sv~~spdG-~~l~s~s~d  491 (493)
                      +..+  +..+.+|...|++|.|+|-. ++++++++|
T Consensus       245 R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD  280 (370)
T KOG1007|consen  245 RKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD  280 (370)
T ss_pred             cCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence            9654  33689999999999999975 566777766

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=6.8e-14  Score=131.29  Aligned_cols=197  Identities=17%  Similarity=0.216  Sum_probs=146.3

Q ss_pred             CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (493)
Q Consensus       248 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~  325 (493)
                      ..+|++...|.|++||..+.+       ..++|.+|...++.++|..  ..+.+.+|+.||+||+||++.......+...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~-------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ-------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh-------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence            568999999999999987532       3446889999999999987  4668999999999999999988776666554


Q ss_pred             CCCC-ceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE-EEecCCCCEeEEEEeCCC--e
Q 011126          326 DTDP-SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWSKNG--F  401 (493)
Q Consensus       326 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~g--~  401 (493)
                      ..+. ....+..+-...+++.+.          -....+..+++|+.+....   ++. -...|...|++|.|+|.+  +
T Consensus       114 ~~~~~~f~~ld~nck~~ii~~Gt----------E~~~s~A~v~lwDvR~~qq---~l~~~~eSH~DDVT~lrFHP~~pnl  180 (376)
T KOG1188|consen  114 QQSGTPFICLDLNCKKNIIACGT----------ELTRSDASVVLWDVRSEQQ---LLRQLNESHNDDVTQLRFHPSDPNL  180 (376)
T ss_pred             CCCCCcceEeeccCcCCeEEecc----------ccccCceEEEEEEeccccc---hhhhhhhhccCcceeEEecCCCCCe
Confidence            4431 222222222333333332          2234556778888766543   232 245699999999999987  9


Q ss_pred             EEEEeCCCeEEEEECCCC----cEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          402 LLSSSADKTVRLWQVGID----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       402 l~sgs~Dg~V~lWd~~~~----~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      |++|+.||.|.|+|+...    ..+.++.|...|.++.|....-..|.+-+..++..+|++..+...
T Consensus       181 LlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  181 LLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE  247 (376)
T ss_pred             EEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence            999999999999999754    356777799999999998723346888899999999999987644

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=2e-13  Score=126.62  Aligned_cols=183  Identities=19%  Similarity=0.222  Sum_probs=143.3

Q ss_pred             ccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCC
Q 011126          283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS  362 (493)
Q Consensus       283 H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  362 (493)
                      -...|..|+|+|.+..|+.++.||++++||+........++... +..++.|..                 ....+.++.
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~-plL~c~F~d-----------------~~~~~~G~~   73 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGA-PLLDCAFAD-----------------ESTIVTGGL   73 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCC-ceeeeeccC-----------------CceEEEecc
Confidence            46789999999999999999999999999998776555554332 222222221                 223456667


Q ss_pred             CceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCC
Q 011126          363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD  441 (493)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~  441 (493)
                      ++.+..++...     .+...+..|..+|.||.+++.. .+++|+.|++|++||.+...+...+.....|.|+..   .+
T Consensus        74 dg~vr~~Dln~-----~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g  145 (323)
T KOG1036|consen   74 DGQVRRYDLNT-----GNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SG  145 (323)
T ss_pred             CceEEEEEecC-----CcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec---cC
Confidence            77777666543     3345567799999999999865 999999999999999999888888887889999997   56


Q ss_pred             CEEEEEeCCCeEEEEeCCCCeEE---EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          442 NYFISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       442 ~~l~sgs~Dg~V~IWdl~~~~~~---~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +.|+.|+.|.+|.+||+++....   .....+..+.+|++-|++...++++-+
T Consensus       146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie  198 (323)
T KOG1036|consen  146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE  198 (323)
T ss_pred             CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeec
Confidence            88999999999999999987644   245677889999999999888888754

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.55  E-value=1.1e-13  Score=129.03  Aligned_cols=194  Identities=13%  Similarity=0.205  Sum_probs=154.0

Q ss_pred             ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (493)
Q Consensus       235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~  314 (493)
                      ...+.|.+|++++..+|++.....|.||...+..    .....+++..|...|+.|+|+|..+.|++|+.|..-+||...
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            3456678999999999999999999999887554    234556788999999999999999999999999999999873


Q ss_pred             CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEE
Q 011126          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (493)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  394 (493)
                      .+..                                                           -+|...+..|....+++
T Consensus        86 ~~~~-----------------------------------------------------------WkptlvLlRiNrAAt~V  106 (361)
T KOG1523|consen   86 SGGT-----------------------------------------------------------WKPTLVLLRINRAATCV  106 (361)
T ss_pred             CCCe-----------------------------------------------------------eccceeEEEeccceeeE
Confidence            3221                                                           12334455678899999


Q ss_pred             EEeCCC-eEEEEeCCCeEEEEECCCCcEE---EEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC-------
Q 011126          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCL---RVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-------  461 (493)
Q Consensus       395 ~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~---~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~-------  461 (493)
                      .|+|.. .+++|+.-+.|.||-+....--   +.+  .+.+.|+++.|+| ++-+|++|+.|++.||+..--.       
T Consensus       107 ~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpa  185 (361)
T KOG1523|consen  107 KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPA  185 (361)
T ss_pred             eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCC
Confidence            999998 9999999999999987654332   122  2678899999999 9999999999999999975311       


Q ss_pred             -----------eEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          462 -----------QVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       462 -----------~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                                 +++ .+....+.|..+.|+|+|..|+-.+.|.
T Consensus       186 p~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds  228 (361)
T KOG1523|consen  186 PTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS  228 (361)
T ss_pred             CCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC
Confidence                       122 2335567899999999999998777664

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.55  E-value=6.9e-14  Score=140.51  Aligned_cols=256  Identities=20%  Similarity=0.267  Sum_probs=164.2

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCC
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDG  306 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg  306 (493)
                      +....+|.++|-.+.|-|...+|++++.|.++++||++.....     ....+.+|++.|.+++|.|. ...+++|+.||
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg  167 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDG  167 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-----cceeecccccccchhhhccCCCcceeeccCCC
Confidence            4455678888888999998889999999999999999865432     22246899999999999994 55889999999


Q ss_pred             cEEEEecCCCee--eeee-----eccCC---CCceEE--------EeeCCCCceeeeeccCccccceeeeecCCCceEEE
Q 011126          307 TVRVWKVIEHER--LDGF-----DVQDT---DPSCLY--------FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVV  368 (493)
Q Consensus       307 ~V~iWdl~~~~~--~~~~-----~~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  368 (493)
                      .|.|||+.-...  ...+     ..+..   +.....        ....-...+..+.+   +-.......+..|+.+.+
T Consensus       168 ~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKV  244 (720)
T KOG0321|consen  168 EILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKV  244 (720)
T ss_pred             cEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEE
Confidence            999999854331  0000     00000   000000        00000000001100   111222334456899999


Q ss_pred             cCCCceeec--ccc--eEEEecC---CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc--EEEEecC---CCcEEEEE
Q 011126          369 LPPKVFRLL--EKP--LHEFQGH---SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFSH---NNYVTSVA  435 (493)
Q Consensus       369 ~~~~~~~~~--~~~--~~~~~~h---~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~--~~~~~~h---~~~V~~v~  435 (493)
                      |+++.....  ..+  ...+.-|   .-.+.+|.....| +|++.+.|+.|.+|++.+..  ++..+.+   ...-..-.
T Consensus       245 WDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~  324 (720)
T KOG0321|consen  245 WDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSE  324 (720)
T ss_pred             EeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeee
Confidence            998643322  122  2233334   3467788887778 77777779999999998643  3333321   11222335


Q ss_pred             EccCCCCEEEEEeCCCeEEEEeCCCCeE--EEecCCCCCeEEEEEccCCC-EEEEeecCC
Q 011126          436 FNPVDDNYFISGSIDGKVRIWEVRRCQV--VDYTDIREIVSAVCYCPDGK-VRQNSACNF  492 (493)
Q Consensus       436 fsp~d~~~l~sgs~Dg~V~IWdl~~~~~--~~~~~~~~~I~sv~~spdG~-~l~s~s~d~  492 (493)
                      .+| ++.+|++|+.|..++||.+.+.+.  ..+.+|.-.|++++|.|... -+++++.|+
T Consensus       325 lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~  383 (720)
T KOG0321|consen  325 LSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDF  383 (720)
T ss_pred             cCC-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCc
Confidence            678 999999999999999999998754  35789999999999988642 334445554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.55  E-value=5.3e-14  Score=140.91  Aligned_cols=160  Identities=14%  Similarity=0.297  Sum_probs=122.9

Q ss_pred             cccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCC
Q 011126          238 HGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       238 ~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~  315 (493)
                      +..+.|.| |...||+++.||.|++|.+...............+.+|...|+.|.|+| ....|+++++|-+|++||+.+
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            44467777 4578999999999999999877666556666778999999999999999 566899999999999999976


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      ++.                                                              ...+.+|++.|.+++
T Consensus       710 ~~~--------------------------------------------------------------~~~l~gHtdqIf~~A  727 (1012)
T KOG1445|consen  710 AKL--------------------------------------------------------------YSRLVGHTDQIFGIA  727 (1012)
T ss_pred             hhh--------------------------------------------------------------hheeccCcCceeEEE
Confidence            642                                                              345678999999999


Q ss_pred             EeCCC-eEEEEeCCCeEEEEECCCCcE-EEEec--CCCcEEEEEEccCCCCEEEEEeCCC----eEEEEeCCC
Q 011126          396 WSKNG-FLLSSSADKTVRLWQVGIDRC-LRVFS--HNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRR  460 (493)
Q Consensus       396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~-~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg----~V~IWdl~~  460 (493)
                      |+|+| .+++.+.||+|+||.-+++.. +..-.  ....-..|.|-- ++++++..+.|.    .|.+||..+
T Consensus       728 WSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  728 WSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             ECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhh
Confidence            99999 999999999999999876542 22211  122233455555 777777766653    466666553

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.55  E-value=1.9e-13  Score=124.18  Aligned_cols=241  Identities=14%  Similarity=0.172  Sum_probs=151.4

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeee-cccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      +..|...+.++.|..++. |.+|...|.|++|.+.+.....       .+. .|...|+.+.--|++ .|.+-+.|+.+.
T Consensus        10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~-------~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~   80 (323)
T KOG0322|consen   10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP-------LIRLFGRLFITNLQSIPND-SLDTQGRDPLLI   80 (323)
T ss_pred             eccccchheehhhccchh-hhcccccceEEEEEeecCccch-------hhhhhccceeeceeecCCc-chhhcCCCceEE
Confidence            335667778888888876 8899999999999998655322       244 577889999999984 678899999999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCcee--eeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI--PIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (493)
                      +|++..+..+..-....+....+.++........  ....................-.+.+-+.           .-.+.
T Consensus        81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd-----------~~~~K  149 (323)
T KOG0322|consen   81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD-----------SERSK  149 (323)
T ss_pred             EEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc-----------hhccc
Confidence            9999775543332222221111222111111000  0000000000000000000000000000           11234


Q ss_pred             CCCEeEEEEeCC-C---eEEEEeCCCeEEEEECCCCcEEEEe-----------cCCCcEEE-------------------
Q 011126          388 SSEVLDLSWSKN-G---FLLSSSADKTVRLWQVGIDRCLRVF-----------SHNNYVTS-------------------  433 (493)
Q Consensus       388 ~~~V~~l~~sp~-g---~l~sgs~Dg~V~lWd~~~~~~~~~~-----------~h~~~V~~-------------------  433 (493)
                      .+.+.+..|--. +   +|++|.++|.|.+||+.++..+..+           .|..+|.+                   
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl  229 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL  229 (323)
T ss_pred             cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence            566777775433 3   7888999999999999886332221           14444444                   


Q ss_pred             ---------------------------EEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEE
Q 011126          434 ---------------------------VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVR  485 (493)
Q Consensus       434 ---------------------------v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l  485 (493)
                                                 +.+-| |++++||++.|++||||..++.+.+. +..|...|++++|+||...+
T Consensus       230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm  308 (323)
T KOG0322|consen  230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM  308 (323)
T ss_pred             eeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence                                       44445 99999999999999999999998884 78899999999999999999


Q ss_pred             EEeecCC
Q 011126          486 QNSACNF  492 (493)
Q Consensus       486 ~s~s~d~  492 (493)
                      +.++.|.
T Consensus       309 AaaskD~  315 (323)
T KOG0322|consen  309 AAASKDA  315 (323)
T ss_pred             hhccCCc
Confidence            9988774

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.54  E-value=5.7e-13  Score=127.65  Aligned_cols=235  Identities=17%  Similarity=0.241  Sum_probs=162.2

Q ss_pred             cccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccc-------c--ccccccceeeecccCCEEEEEEccCC
Q 011126          226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR-------E--LSSLYTGQEFLAHEGSILTMKFSLDG  296 (493)
Q Consensus       226 ~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~-------~--~~~~~~~~~l~~H~~~I~~l~fspdg  296 (493)
                      .....+..|...++.+.|+|+|.+||+|+.+|.|.+|.......       .  ...+.....+.+|...|+.++|+|++
T Consensus        56 ~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~  135 (434)
T KOG1009|consen   56 EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS  135 (434)
T ss_pred             EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC
Confidence            34556788999999999999999999999999999998762110       0  01123345678899999999999999


Q ss_pred             CEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCC----------CceeeeeccC-----------------
Q 011126          297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL----------SQLIPIDVDK-----------------  349 (493)
Q Consensus       297 ~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-----------------  349 (493)
                      .++++++.|..+++||+..|+....+..+...+..++|.+-..          .......+..                 
T Consensus       136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~  215 (434)
T KOG1009|consen  136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE  215 (434)
T ss_pred             ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence            9999999999999999999999888887776665555533211          0011100000                 


Q ss_pred             --ccc----------cceeeeecCCCceEEEcCCCceeec----------------ccceEEEecCCCCEeEEEEeC---
Q 011126          350 --EKI----------DKTKSLRKSSDLTCVVLPPKVFRLL----------------EKPLHEFQGHSSEVLDLSWSK---  398 (493)
Q Consensus       350 --~~~----------~~~~~~~~s~~~~~~~~~~~~~~~~----------------~~~~~~~~~h~~~V~~l~~sp---  398 (493)
                        .+.          .......-+.++..++.+.+.++..                ..|+..+.+...++..+.++|   
T Consensus       216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~  295 (434)
T KOG1009|consen  216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYY  295 (434)
T ss_pred             CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEE
Confidence              000          0011123345566666555444332                244555555566666666665   


Q ss_pred             ---------------CC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          399 ---------------NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       399 ---------------~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                                     -+ .+|.++ .+.|.|||.++-.++....  |-..++.++|++ +|.+|+..+.||...+--+..
T Consensus       296 elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~  373 (434)
T KOG1009|consen  296 ELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEP  373 (434)
T ss_pred             EeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEEEEEcc
Confidence                           12 234444 4679999999988888776  899999999999 999999999999877766654


Q ss_pred             Ce
Q 011126          461 CQ  462 (493)
Q Consensus       461 ~~  462 (493)
                      .+
T Consensus       374 ~e  375 (434)
T KOG1009|consen  374 WE  375 (434)
T ss_pred             hh
Confidence            43

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.54  E-value=7.8e-14  Score=130.23  Aligned_cols=221  Identities=16%  Similarity=0.259  Sum_probs=151.5

Q ss_pred             cCceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126          228 LGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (493)
                      .+.+.+|-..++.+.++|.. +++++++.|..|++|+++......  .+  .-+.+|.+.|.++.|+++|.+|++||.|.
T Consensus       128 ~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~--Vf--GG~egHrdeVLSvD~~~~gd~i~ScGmDh  203 (385)
T KOG1034|consen  128 SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVA--VF--GGVEGHRDEVLSVDFSLDGDRIASCGMDH  203 (385)
T ss_pred             ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEE--Ee--cccccccCcEEEEEEcCCCCeeeccCCcc
Confidence            34566777888889999987 577889999999999998665322  11  23578999999999999999999999999


Q ss_pred             cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCC--------cee---eeeccC-----ccccceeeeecCCCceEEEcC
Q 011126          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLS--------QLI---PIDVDK-----EKIDKTKSLRKSSDLTCVVLP  370 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~-----~~~~~~~~~~~s~~~~~~~~~  370 (493)
                      +|++|++...+....++..      ..+.++...        .+.   ..+...     .....-..+..+.++.++.|.
T Consensus       204 slk~W~l~~~~f~~~lE~s------~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~  277 (385)
T KOG1034|consen  204 SLKLWRLNVKEFKNKLELS------ITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWK  277 (385)
T ss_pred             eEEEEecChhHHhhhhhhh------cccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEe
Confidence            9999999855433222211      000010000        000   000111     111223446777888888887


Q ss_pred             CCceee----------cccceEEEecCCCCEeEEEEeC--CC-eEEEEeCCCeEEEEECCCCcEE--EEec---CCCcEE
Q 011126          371 PKVFRL----------LEKPLHEFQGHSSEVLDLSWSK--NG-FLLSSSADKTVRLWQVGIDRCL--RVFS---HNNYVT  432 (493)
Q Consensus       371 ~~~~~~----------~~~~~~~~~~h~~~V~~l~~sp--~g-~l~sgs~Dg~V~lWd~~~~~~~--~~~~---h~~~V~  432 (493)
                      +....-          ....+..+.-....|.-|.|.-  -+ .|+.|...|.|.+||++...+.  .++.   -...|.
T Consensus       278 pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVR  357 (385)
T KOG1034|consen  278 PGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVR  357 (385)
T ss_pred             cchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceee
Confidence            732211          1133455555667777776654  45 8999999999999999876553  2222   456899


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          433 SVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       433 ~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      ..+|+. ++.+|+..+.|++|.-||..
T Consensus       358 Q~sfS~-dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  358 QTSFSR-DGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence            999999 99999999999999999864

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.53  E-value=1.7e-13  Score=126.01  Aligned_cols=193  Identities=17%  Similarity=0.266  Sum_probs=142.5

Q ss_pred             ccceeccCC-----CeEEeeecCCeEEEEECCCc--cccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEE
Q 011126          239 GSATLKPGD-----HELTLGQRMRRVRVHPVKKQ--SRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRV  310 (493)
Q Consensus       239 ~~~~fsp~g-----~~lasgs~dg~V~vwd~~~~--~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~i  310 (493)
                      +.+.|.|+.     .+||+.  +..+|+|.+...  ...+........-..|..++++..|+. +-++|.+++-|-+..|
T Consensus       100 tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTi  177 (364)
T KOG0290|consen  100 TKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTI  177 (364)
T ss_pred             cceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEE
Confidence            335565554     245554  456999998742  222222222222344677999999987 7789999999999999


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      ||+.++..                                                           ......+..|...
T Consensus       178 Wdie~~~~-----------------------------------------------------------~~vkTQLIAHDKE  198 (364)
T KOG0290|consen  178 WDIETGVS-----------------------------------------------------------GTVKTQLIAHDKE  198 (364)
T ss_pred             EEEeeccc-----------------------------------------------------------cceeeEEEecCcc
Confidence            99977621                                                           0002345679999


Q ss_pred             EeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEccCCCCEEEEEeCC-CeEEEEeCCCC--
Q 011126          391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRC--  461 (493)
Q Consensus       391 V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~D-g~V~IWdl~~~--  461 (493)
                      |.+|+|...+  ++++.+.||.||++|++.......+-    ...+...++|++++.+|+|+-..| .+|.|.|++..  
T Consensus       199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t  278 (364)
T KOG0290|consen  199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT  278 (364)
T ss_pred             eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence            9999999976  99999999999999999876555442    356889999999999999997766 57999999964  


Q ss_pred             eEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          462 QVVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       462 ~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      -+..+.+|...|++|+|.|....-++.+.|.
T Consensus       279 pva~L~~H~a~VNgIaWaPhS~~hictaGDD  309 (364)
T KOG0290|consen  279 PVARLRNHQASVNGIAWAPHSSSHICTAGDD  309 (364)
T ss_pred             ceehhhcCcccccceEecCCCCceeeecCCc
Confidence            3447999999999999999876554444443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.53  E-value=1.6e-13  Score=133.20  Aligned_cols=199  Identities=19%  Similarity=0.240  Sum_probs=144.6

Q ss_pred             cceeeecccCCEEEEEEccCC--CEEEEEECCCcEEEEecCCC----eeeeeeeccCCCCceEEEeeCCCCceeeeeccC
Q 011126          276 TGQEFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVWKVIEH----ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK  349 (493)
Q Consensus       276 ~~~~l~~H~~~I~~l~fspdg--~~Lasgs~Dg~V~iWdl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (493)
                      ..+.+.-|.+.|++++|+|..  +++|+|..-|+|-+||+.+.    ..+..+..+..++.++.|.+.....++..    
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss----  253 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS----  253 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee----
Confidence            334567799999999999954  58899999999999999522    23445566667788888888877766544    


Q ss_pred             ccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE-EEEec-
Q 011126          350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVFS-  426 (493)
Q Consensus       350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~-~~~~~-  426 (493)
                                 +.++.+...+......  ..+.........+..+.|+... .++.+..=|...+||++++.. ...+. 
T Consensus       254 -----------SyDGtiR~~D~~~~i~--e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l  320 (498)
T KOG4328|consen  254 -----------SYDGTIRLQDFEGNIS--EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL  320 (498)
T ss_pred             -----------ccCceeeeeeecchhh--HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence                       3444444433321111  1122222233456677777766 666776667999999998765 33333 


Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC---e--EEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC---Q--VVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~---~--~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      |...|++|+++|....+|||++.|++++|||++.-   .  .+....|...|.++.|+|+|-.|++.+.|
T Consensus       321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D  390 (498)
T KOG4328|consen  321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD  390 (498)
T ss_pred             hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccC
Confidence            88899999999999999999999999999999842   1  35678899999999999998778887765

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.52  E-value=2.4e-13  Score=125.05  Aligned_cols=191  Identities=13%  Similarity=0.240  Sum_probs=131.9

Q ss_pred             CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC-EEEEEECCCcEEEEecCCCeeeeeeec
Q 011126          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDV  324 (493)
Q Consensus       246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V~iWdl~~~~~~~~~~~  324 (493)
                      +-+++.+.+-|.+..|||++...    ..+....+-+|...|..|+|...+. .+|+.|.||.||++|++..+....+..
T Consensus       162 dp~~igtSSiDTTCTiWdie~~~----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE  237 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETGV----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE  237 (364)
T ss_pred             CcceeEeecccCeEEEEEEeecc----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec
Confidence            34588999999999999998752    1122335789999999999998654 789999999999999987664433332


Q ss_pred             cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eE
Q 011126          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FL  402 (493)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l  402 (493)
                      ...+          ...++-+.+..........+ ......+++.+.+   ....|+..+.+|.+.|+.|+|.|..  +|
T Consensus       238 ~p~~----------~~pLlRLswnkqDpnymATf-~~dS~~V~iLDiR---~P~tpva~L~~H~a~VNgIaWaPhS~~hi  303 (364)
T KOG0290|consen  238 DPSP----------STPLLRLSWNKQDPNYMATF-AMDSNKVVILDIR---VPCTPVARLRNHQASVNGIAWAPHSSSHI  303 (364)
T ss_pred             CCCC----------CCcceeeccCcCCchHHhhh-hcCCceEEEEEec---CCCcceehhhcCcccccceEecCCCCcee
Confidence            2221          11222222222222111111 1122334444443   2456789999999999999999986  99


Q ss_pred             EEEeCCCeEEEEECCCCc------EEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEE
Q 011126          403 LSSSADKTVRLWQVGIDR------CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (493)
Q Consensus       403 ~sgs~Dg~V~lWd~~~~~------~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I  455 (493)
                      +|++.|..+.+||+....      ++..+..++.|+.|+|+|..+.+|+.+.. +++.|
T Consensus       304 ctaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  304 CTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             eecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            999999999999997532      23344578899999999988899888754 44444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=6.8e-14  Score=138.23  Aligned_cols=181  Identities=18%  Similarity=0.282  Sum_probs=137.7

Q ss_pred             ccccccccC---ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--C
Q 011126          221 KRGWLKKLG---AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--D  295 (493)
Q Consensus       221 k~~w~~~~~---~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--d  295 (493)
                      ...|++++.   .+.+|...|+++.|+.+|.+|++|+.|.++.|||.-..+....      .-.+|...|.+++|-|  +
T Consensus        33 ~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs------I~TgHtaNIFsvKFvP~tn  106 (758)
T KOG1310|consen   33 NSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS------ISTGHTANIFSVKFVPYTN  106 (758)
T ss_pred             ccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee------eecccccceeEEeeeccCC
Confidence            345555443   5889999999999999999999999999999999874332211      2368999999999999  5


Q ss_pred             CCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee
Q 011126          296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR  375 (493)
Q Consensus       296 g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  375 (493)
                      .+++++|..|..|+++|+...+.-.. .                         .                          
T Consensus       107 nriv~sgAgDk~i~lfdl~~~~~~~~-d-------------------------~--------------------------  134 (758)
T KOG1310|consen  107 NRIVLSGAGDKLIKLFDLDSSKEGGM-D-------------------------H--------------------------  134 (758)
T ss_pred             CeEEEeccCcceEEEEeccccccccc-c-------------------------c--------------------------
Confidence            66899999999999999865321000 0                         0                          


Q ss_pred             ecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc-------EEEEec----CCCcEEEEEEccCCCC
Q 011126          376 LLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-------CLRVFS----HNNYVTSVAFNPVDDN  442 (493)
Q Consensus       376 ~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~-------~~~~~~----h~~~V~~v~fsp~d~~  442 (493)
                      -...+.+.+..|...|..|+-.|++  .+.+++.||+|+-+|++...       +...+.    .--...|+.++|.+..
T Consensus       135 ~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~  214 (758)
T KOG1310|consen  135 GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPY  214 (758)
T ss_pred             CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCc
Confidence            0012344566799999999999998  89999999999999998532       111111    1235679999999999


Q ss_pred             EEEEEeCCCeEEEEeCC
Q 011126          443 YFISGSIDGKVRIWEVR  459 (493)
Q Consensus       443 ~l~sgs~Dg~V~IWdl~  459 (493)
                      +|+.|+.|--+++||.+
T Consensus       215 ~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  215 YLAVGGSDPFARLYDRR  231 (758)
T ss_pred             eEEecCCCchhhhhhhh
Confidence            99999999999999954

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=2.3e-13  Score=129.48  Aligned_cols=202  Identities=13%  Similarity=0.150  Sum_probs=151.0

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceee-ecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTV  308 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~V  308 (493)
                      .+.+|...++++.|+.++++||+|+.|..++||++........ ..+.+.. ..|...|.|++|....++|++|+.+++|
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-CCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            4667888899999999999999999999999999864322111 1122222 3466899999999988999999999999


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      ...|+.+.+.+..+..                                                            ....
T Consensus       130 I~HDiEt~qsi~V~~~------------------------------------------------------------~~~~  149 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANE------------------------------------------------------------NNNR  149 (609)
T ss_pred             Eeeecccceeeeeecc------------------------------------------------------------cCcc
Confidence            9999987764332211                                                            1235


Q ss_pred             CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc-EEEEe---cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-CLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~-~~~~~---~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      +.|+.+..+|.. .|++.+.++.|.+||.+..+ .+..+   ........+.|+|....+|++.+..+-+-+||++..+.
T Consensus       150 ~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~  229 (609)
T KOG4227|consen  150 GDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR  229 (609)
T ss_pred             cceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc
Confidence            688899999977 99999999999999998655 22222   35667889999999999999999999999999987542


Q ss_pred             E--E---ecCCCC---CeEEEEEccCCCEEEEeecCC
Q 011126          464 V--D---YTDIRE---IVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       464 ~--~---~~~~~~---~I~sv~~spdG~~l~s~s~d~  492 (493)
                      -  .   ..+...   .-.++.|+|+|..+++--..+
T Consensus       230 ~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~  266 (609)
T KOG4227|consen  230 PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK  266 (609)
T ss_pred             hHHhhhccccCcccchhhhheeeCCCCCeehhhhccC
Confidence            2  2   222222   235678999998876654443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.51  E-value=1.8e-12  Score=118.83  Aligned_cols=152  Identities=20%  Similarity=0.440  Sum_probs=108.9

Q ss_pred             ceeccCCCeEEeeec----------CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE--ECCCcE
Q 011126          241 ATLKPGDHELTLGQR----------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG--GEDGTV  308 (493)
Q Consensus       241 ~~fsp~g~~lasgs~----------dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg--s~Dg~V  308 (493)
                      +.|+|+|.+|++-..          -+...||.+.........+    .+ .+.++|.+++|+|+|+.||..  ..++.|
T Consensus        11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i----~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v   85 (194)
T PF08662_consen   11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI----EL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKV   85 (194)
T ss_pred             EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee----ec-cCCCceEEEEECcCCCEEEEEEccCCccc
Confidence            778999988776433          2345666654333222211    11 234579999999999987554  467799


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      .+||+. ++.                                                              +..+  +.
T Consensus        86 ~lyd~~-~~~--------------------------------------------------------------i~~~--~~  100 (194)
T PF08662_consen   86 TLYDVK-GKK--------------------------------------------------------------IFSF--GT  100 (194)
T ss_pred             EEEcCc-ccE--------------------------------------------------------------eEee--cC
Confidence            999984 221                                                              2222  24


Q ss_pred             CCEeEEEEeCCC-eEEEEeC---CCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC------CCeEEEEeC
Q 011126          389 SEVLDLSWSKNG-FLLSSSA---DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI------DGKVRIWEV  458 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~sgs~---Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~------Dg~V~IWdl  458 (493)
                      ..+..|.|+|+| +|++++.   .|.|.+||++..+.+..+.|.. ++.++|+| +|++|+++..      |+.++||+.
T Consensus       101 ~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  101 QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcC-CCCEEEEEEeccceeccccEEEEEe
Confidence            567789999999 8887764   3679999999999998888765 78999999 9999999875      788999999


Q ss_pred             CCCeEE
Q 011126          459 RRCQVV  464 (493)
Q Consensus       459 ~~~~~~  464 (493)
                      ....+.
T Consensus       179 ~G~~l~  184 (194)
T PF08662_consen  179 QGRLLY  184 (194)
T ss_pred             cCeEeE
Confidence            654443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=1.4e-12  Score=126.69  Aligned_cols=190  Identities=16%  Similarity=0.278  Sum_probs=147.3

Q ss_pred             cCCEEEEEEccCCCEEEEEECCCcEEEEecCC--CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecC
Q 011126          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIE--HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS  361 (493)
Q Consensus       284 ~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  361 (493)
                      .+.|++|.|+|..+.|++|+.|++++||.+..  ...++.+.....++.+..|.+++...++               ..+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~---------------~s~  277 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIF---------------TSG  277 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEE---------------ecc
Confidence            57899999999999999999999999999853  3456677777777777777776643322               233


Q ss_pred             CCceEEEcCCCceeecccceEEEecCC-CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccC
Q 011126          362 SDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV  439 (493)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~  439 (493)
                      .....+.|+...-.+  .++..+.++. ..+.....+|++ +|+..+..|.|.|....+++.+..++..+.|..++|+. 
T Consensus       278 rrky~ysyDle~ak~--~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS-  354 (514)
T KOG2055|consen  278 RRKYLYSYDLETAKV--TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS-  354 (514)
T ss_pred             cceEEEEeecccccc--ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-
Confidence            333445555432221  2344444544 356677889998 99999999999999999999999999999999999998 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCC-CCeEEEEEccCCCEEEEeecC
Q 011126          440 DDNYFISGSIDGKVRIWEVRRCQVVD-YTDIR-EIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       440 d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~-~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ++..|++++.+|.|.+||++...++. +.+.. -.-+++|.+++|.+||+|+..
T Consensus       355 dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~  408 (514)
T KOG2055|consen  355 DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS  408 (514)
T ss_pred             CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCc
Confidence            99999999999999999999998875 33322 235788999999999999853

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.50  E-value=1.7e-11  Score=123.47  Aligned_cols=234  Identities=25%  Similarity=0.450  Sum_probs=174.3

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeeccc-CCEEEEEE-ccCCC-EEEEEEC-C
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKF-SLDGQ-YLASGGE-D  305 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~f-spdg~-~Lasgs~-D  305 (493)
                      ....+...+..+.+.+.+..++.++.++.+.+|+........      ..+..+. ..+..+.+ ++++. +++..+. |
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  133 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI------KSLEGLHDSSVSKLALSSPDGNSILLASSSLD  133 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeE------EEEeccCCCceeeEEEECCCcceEEeccCCCC
Confidence            344566677778999999999999999999999988664111      2344433 37777777 88887 5555455 9


Q ss_pred             CcEEEEecCC-CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecC-CCceEEEcCCCceeecccceEE
Q 011126          306 GTVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS-SDLTCVVLPPKVFRLLEKPLHE  383 (493)
Q Consensus       306 g~V~iWdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~  383 (493)
                      +.+++|++.. ......+..+...+..+.+.+...                ..+... .++.+.+|+...    .+.+..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~----~~~~~~  193 (466)
T COG2319         134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK----------------LLASGSSLDGTIKLWDLRT----GKPLST  193 (466)
T ss_pred             ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCC----------------EEEecCCCCCceEEEEcCC----CceEEe
Confidence            9999999988 676777777766666666655543                111222 366666666654    345677


Q ss_pred             EecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEE-Eec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLR-VFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       384 ~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~-~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      +.+|...|.+++|+|++  .+++++.|+.|++||...+..+. .+. |...+ -..|+| ++.++++++.|+.+++|++.
T Consensus       194 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeec
Confidence            78899999999999988  44455999999999999888877 454 76664 338999 77899999999999999999


Q ss_pred             CCeE-E-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          460 RCQV-V-DYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       460 ~~~~-~-~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      .... + ....|...|.++.|.|++..+++++.+
T Consensus       272 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d  305 (466)
T COG2319         272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD  305 (466)
T ss_pred             CCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC
Confidence            6653 3 345778899999999999998887665

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.50  E-value=5.5e-13  Score=131.78  Aligned_cols=199  Identities=19%  Similarity=0.329  Sum_probs=140.3

Q ss_pred             ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECCCcEEEEecCCCeeeeee
Q 011126          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGF  322 (493)
Q Consensus       244 sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~V~iWdl~~~~~~~~~  322 (493)
                      .|.+--|+.|-..|.|.+.+...  .+++.++.... .-.+..|++++|-|.+ ..++.+-.+|.+.+||..-       
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~--~~~sklfne~r-~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------  251 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPIN--FEVSKLFNEER-LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------  251 (636)
T ss_pred             CCCCcceEEeeccCceEEecchh--hHHHHhhhhcc-cccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------
Confidence            56677788888889999888765  33333333222 2235789999999944 4666677899999998621       


Q ss_pred             eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-e
Q 011126          323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F  401 (493)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~  401 (493)
                      ......+....+   .....+.+                     ..+.   ......|+..+.--.+.|+.++|+|+| +
T Consensus       252 ~~~~t~p~~~~~---k~~~~f~i---------------------~t~k---sk~~rNPv~~w~~~~g~in~f~FS~DG~~  304 (636)
T KOG2394|consen  252 VCGATAPSYQAL---KDGDQFAI---------------------LTSK---SKKTRNPVARWHIGEGSINEFAFSPDGKY  304 (636)
T ss_pred             cccCCCCccccc---CCCCeeEE---------------------eeee---ccccCCccceeEeccccccceeEcCCCce
Confidence            111111111110   00000000                     0000   001113444444456689999999999 9


Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEc
Q 011126          402 LLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYC  479 (493)
Q Consensus       402 l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~s  479 (493)
                      ||+.+.||.+||+|..+.+.+..++ .-+...|++|+| |++||++|+.|-.|.||.+..++++. =.+|+..|+.|+|.
T Consensus       305 LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  305 LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            9999999999999999998888876 667899999999 99999999999999999999999996 58999999999999


Q ss_pred             c
Q 011126          480 P  480 (493)
Q Consensus       480 p  480 (493)
                      |
T Consensus       384 p  384 (636)
T KOG2394|consen  384 P  384 (636)
T ss_pred             c
Confidence            7

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=7.2e-13  Score=132.35  Aligned_cols=247  Identities=12%  Similarity=0.172  Sum_probs=159.6

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC--EEEEEECCCcE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTV  308 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Lasgs~Dg~V  308 (493)
                      +.+|.+.+.++..+|.|.+||+|+.||+|+||.+.+.....       +++ -.+.|.+|+|+|.+.  .||.+-.. .+
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr-------~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~  466 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVR-------TVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CV  466 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEE-------EEe-ecceeEEEEecCCCCceeEEEEecC-ce
Confidence            67888999999999999999999999999999987655322       222 356899999999765  45554444 46


Q ss_pred             EEEecCCCeeeee---------eec-cCCCCceEEEeeC--------------CCCceeeeeccCccccceeeeecCCCc
Q 011126          309 RVWKVIEHERLDG---------FDV-QDTDPSCLYFTIN--------------HLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (493)
Q Consensus       309 ~iWdl~~~~~~~~---------~~~-~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~s~~~  364 (493)
                      .|-+-.-|..+..         ... .......+.|...              +...+..+.+....-+.......+...
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK  546 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence            6665433321111         100 0111111222222              111111122222221222222222233


Q ss_pred             eEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCC
Q 011126          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN  442 (493)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~  442 (493)
                      .+++.+...-.    ....|..-.+.|.++.|+|.. +|+.++. ..|+|||+..+..++.+. ....|..++.+| .|.
T Consensus       547 ~VliHQLSK~~----sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GD  620 (733)
T KOG0650|consen  547 SVLIHQLSKRK----SQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGD  620 (733)
T ss_pred             eEEEEeccccc----ccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCC
Confidence            33333332111    112233446778999999998 6666654 679999999877776664 567899999999 999


Q ss_pred             EEEEEeCCCeEEEEeCCCC-eEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          443 YFISGSIDGKVRIWEVRRC-QVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       443 ~l~sgs~Dg~V~IWdl~~~-~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      .|+.|+.|+++..+|+.-. ++. .+..|...+++|+|++.-.++++++-|.
T Consensus       621 nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDg  672 (733)
T KOG0650|consen  621 NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDG  672 (733)
T ss_pred             eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCC
Confidence            9999999999999999855 344 5788999999999999998998888765

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=2.2e-12  Score=122.00  Aligned_cols=191  Identities=13%  Similarity=0.282  Sum_probs=138.5

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeee-cccCCEEEEEEccC-CCEEEEEECCCcEEEEecCCCee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~~  318 (493)
                      ++||+.-..+|++..|-.|++|+......  .      .++ .-+..|++|+|-|. +..|+.|+..| |.||.....-.
T Consensus       104 ~aWhqH~~~fava~nddvVriy~ksst~p--t------~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln  174 (445)
T KOG2139|consen  104 VAWHQHIIAFAVATNDDVVRIYDKSSTCP--T------KLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN  174 (445)
T ss_pred             EeechhhhhhhhhccCcEEEEeccCCCCC--c------eecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence            78899878889999999999998764221  1      111 23567999999995 55788888766 99998643211


Q ss_pred             eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC
Q 011126          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (493)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  398 (493)
                      ....         +.....+                                       ...+....|| .+|+.+.|++
T Consensus       175 ~~r~---------~~~~s~~---------------------------------------~~qvl~~pgh-~pVtsmqwn~  205 (445)
T KOG2139|consen  175 ANRN---------IRMMSTH---------------------------------------HLQVLQDPGH-NPVTSMQWNE  205 (445)
T ss_pred             cccc---------ccccccc---------------------------------------chhheeCCCC-ceeeEEEEcC
Confidence            0000         0000000                                       0012233456 7899999999


Q ss_pred             CC-eEEEEe-CCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC-CCeEEEecCCCCCeE
Q 011126          399 NG-FLLSSS-ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVDYTDIREIVS  474 (493)
Q Consensus       399 ~g-~l~sgs-~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~-~~~~~~~~~~~~~I~  474 (493)
                      +| .|++++ .|..|+|||..++.++.... -.+.++-+.|+| |+.+|.++.-|+..++|+.. +.....|.-..+.|.
T Consensus       206 dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvq  284 (445)
T KOG2139|consen  206 DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQ  284 (445)
T ss_pred             CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCcee
Confidence            99 777776 56789999999998887763 567788999999 99999999999999999554 445556776777999


Q ss_pred             EEEEccCCCEEEEeec
Q 011126          475 AVCYCPDGKVRQNSAC  490 (493)
Q Consensus       475 sv~~spdG~~l~s~s~  490 (493)
                      ..+|+|+|+.|+.+..
T Consensus       285 tacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  285 TACWSPCGSFLLFACS  300 (445)
T ss_pred             eeeecCCCCEEEEEEc
Confidence            9999999998876543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.45  E-value=5.9e-11  Score=119.53  Aligned_cols=218  Identities=30%  Similarity=0.451  Sum_probs=160.1

Q ss_pred             ccCCC-eEEeee-cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEEEecCCCeeee
Q 011126          244 KPGDH-ELTLGQ-RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLD  320 (493)
Q Consensus       244 sp~g~-~lasgs-~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~iWdl~~~~~~~  320 (493)
                      ++++. .++..+ .++.+++|+...      .......+..|...|..++|+|++.++++++. |+.+++|++..+..+.
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLST------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS  192 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecC------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence            67776 455544 499999999875      12223357889999999999999999998885 9999999999877777


Q ss_pred             eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE-EEecCCCCEeEEEEeCC
Q 011126          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWSKN  399 (493)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~  399 (493)
                      .+..+...+.++.+.+...               ........++.+.+|+..    ....+. .+.+|...+ ...|+|+
T Consensus       193 ~~~~~~~~v~~~~~~~~~~---------------~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~  252 (466)
T COG2319         193 TLAGHTDPVSSLAFSPDGG---------------LLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPD  252 (466)
T ss_pred             eeccCCCceEEEEEcCCcc---------------eEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCC
Confidence            7777666666666663322               111123455555566333    122334 577888875 4489999


Q ss_pred             C-eEEEEeCCCeEEEEECCCCcE-EEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe-c--CCCCCe
Q 011126          400 G-FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-T--DIREIV  473 (493)
Q Consensus       400 g-~l~sgs~Dg~V~lWd~~~~~~-~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~-~--~~~~~I  473 (493)
                      + .+++++.|+.+++|++..... +..+ .|...|.++.|+| ++..+++++.|+.+++|++.+...... .  .|...+
T Consensus       253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (466)
T COG2319         253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV  331 (466)
T ss_pred             CCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCce
Confidence            8 888999999999999986664 4444 5889999999999 888888899999999999998876643 2  566679


Q ss_pred             EEEEEccCCCEEEEe
Q 011126          474 SAVCYCPDGKVRQNS  488 (493)
Q Consensus       474 ~sv~~spdG~~l~s~  488 (493)
                      ..+.|.+++..++.+
T Consensus       332 ~~~~~~~~~~~~~~~  346 (466)
T COG2319         332 SSLSFSPDGSLLVSG  346 (466)
T ss_pred             EEEEECCCCCEEEEe
Confidence            999994343556555

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.45  E-value=6.3e-12  Score=115.28  Aligned_cols=99  Identities=20%  Similarity=0.500  Sum_probs=81.8

Q ss_pred             CCCEeEEEEeCCC-eE--EEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC---CeEEEEeCCCC
Q 011126          388 SSEVLDLSWSKNG-FL--LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRC  461 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l--~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWdl~~~  461 (493)
                      .++|.+++|+|+| .|  +.|..++.|.|||++ .+.+..+. ...++.|.|+| +|++|++++.+   |.|.+||+++.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence            4579999999998 54  345577899999997 55666664 56788999999 99999998754   67999999999


Q ss_pred             eEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          462 QVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       462 ~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      +.+....|.. ++.++|+|||++++++++
T Consensus       136 ~~i~~~~~~~-~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  136 KKISTFEHSD-ATDVEWSPDGRYLATATT  163 (194)
T ss_pred             EEeeccccCc-EEEEEEcCCCCEEEEEEe
Confidence            8887666654 789999999999999875

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.44  E-value=2.1e-11  Score=115.84  Aligned_cols=177  Identities=18%  Similarity=0.301  Sum_probs=136.9

Q ss_pred             CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccC-CCCceEEE
Q 011126          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYF  334 (493)
Q Consensus       256 dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~-~~~~~~~~  334 (493)
                      .+.+++.+.++........        ....|.+++++  .+.|+.+-++. |+|||+.+.+.+.++.... .+...+++
T Consensus        67 pr~Lkv~~~Kk~~~ICe~~--------fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~Al  135 (391)
T KOG2110|consen   67 PRKLKVVHFKKKTTICEIF--------FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCAL  135 (391)
T ss_pred             CceEEEEEcccCceEEEEe--------cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEee
Confidence            3568999888665433211        34679999996  45677777664 9999999999999988763 44446677


Q ss_pred             eeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCe-EE
Q 011126          335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKT-VR  412 (493)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~-V~  412 (493)
                      +++..+..+++..            ....+.+++|+...    -+++..+..|.+.+-+|+|+++| +|||++..|+ ||
T Consensus       136 S~n~~n~ylAyp~------------s~t~GdV~l~d~~n----l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIR  199 (391)
T KOG2110|consen  136 SPNNANCYLAYPG------------STTSGDVVLFDTIN----LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIR  199 (391)
T ss_pred             ccCCCCceEEecC------------CCCCceEEEEEccc----ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEE
Confidence            7776655444432            12245666666543    35678889999999999999999 9999999988 78


Q ss_pred             EEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          413 LWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       413 lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      |+.+..++.+..|+   ....|.+++|+| +..+|++.+..++|+|+.+.+
T Consensus       200 Vf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  200 VFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEecc
Confidence            99999999999997   345689999999 999999999999999999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=8.4e-12  Score=129.11  Aligned_cols=186  Identities=16%  Similarity=0.200  Sum_probs=124.7

Q ss_pred             eeeeecccccceeccCCCeEEeeecC---CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCC
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDG  306 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg  306 (493)
                      +..+...+...+|+|+|+.|+..+.+   ..|++|++.......     ...+.+|   ...++|+|||++|+.+. .+|
T Consensus       199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-----l~~~~g~---~~~~~wSPDG~~La~~~~~~g  270 (429)
T PRK01742        199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-----VASFRGH---NGAPAFSPDGSRLAFASSKDG  270 (429)
T ss_pred             eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-----EecCCCc---cCceeECCCCCEEEEEEecCC
Confidence            34445566779999999999987643   469999987543211     1122334   34689999999888764 688


Q ss_pred             cEEEEec--CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          307 TVRVWKV--IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       307 ~V~iWdl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                      .+.||.+  .++.                                                               ...+
T Consensus       271 ~~~Iy~~d~~~~~---------------------------------------------------------------~~~l  287 (429)
T PRK01742        271 VLNIYVMGANGGT---------------------------------------------------------------PSQL  287 (429)
T ss_pred             cEEEEEEECCCCC---------------------------------------------------------------eEee
Confidence            7776643  2221                                                               1122


Q ss_pred             ecCCCCEeEEEEeCCC-eEE-EEeCCCeEEEEECCCC-cEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126          385 QGHSSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~-sgs~Dg~V~lWd~~~~-~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~  461 (493)
                      ..|...+...+|+|+| .|+ ++..++...||++... .....+.+..  .++.|+| ++++|+..+.++ +.+||+.++
T Consensus       288 t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g  363 (429)
T PRK01742        288 TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSG  363 (429)
T ss_pred             ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCC
Confidence            3345567789999999 555 4456788888887532 2223334443  4678999 999998887765 566999988


Q ss_pred             eEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          462 QVVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       462 ~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +...+.... ...++.|+|||++|+.++.+.
T Consensus       364 ~~~~lt~~~-~~~~~~~sPdG~~i~~~s~~g  393 (429)
T PRK01742        364 STEVLSSTF-LDESPSISPNGIMIIYSSTQG  393 (429)
T ss_pred             CeEEecCCC-CCCCceECCCCCEEEEEEcCC
Confidence            765443222 346788999999999887654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=5.6e-13  Score=131.82  Aligned_cols=157  Identities=24%  Similarity=0.445  Sum_probs=123.0

Q ss_pred             cccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccc
Q 011126          274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID  353 (493)
Q Consensus       274 ~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (493)
                      +...++++||++-|+++.|+.+|.+|++|+.|-.+.|||....+.+..+                               
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI-------------------------------   88 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI-------------------------------   88 (758)
T ss_pred             cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee-------------------------------
Confidence            4455679999999999999999999999999999999998654432221                               


Q ss_pred             ceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC---eEEEEeCCCeEEEEECCC----------Cc
Q 011126          354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGI----------DR  420 (493)
Q Consensus       354 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g---~l~sgs~Dg~V~lWd~~~----------~~  420 (493)
                                                    -.||...|.++.|-|..   ++++|..|+.|+|+|+..          ..
T Consensus        89 ------------------------------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~  138 (758)
T KOG1310|consen   89 ------------------------------STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEE  138 (758)
T ss_pred             ------------------------------ecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccc
Confidence                                          25799999999999953   999999999999999974          22


Q ss_pred             EEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-----------EecCCCCCeEEEEEccCC-CEEEE
Q 011126          421 CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----------DYTDIREIVSAVCYCPDG-KVRQN  487 (493)
Q Consensus       421 ~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-----------~~~~~~~~I~sv~~spdG-~~l~s  487 (493)
                      ..+.+. |...|..|+-.|..+..|.+++.||+|+-+|++.....           .+....-...++..+|.. .+|++
T Consensus       139 ~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laV  218 (758)
T KOG1310|consen  139 TTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAV  218 (758)
T ss_pred             hhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEe
Confidence            333343 89999999999955599999999999999999863221           122222346788899976 47788


Q ss_pred             eecC
Q 011126          488 SACN  491 (493)
Q Consensus       488 ~s~d  491 (493)
                      |++|
T Consensus       219 Ggsd  222 (758)
T KOG1310|consen  219 GGSD  222 (758)
T ss_pred             cCCC
Confidence            8775

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=3.8e-11  Score=125.33  Aligned_cols=242  Identities=19%  Similarity=0.251  Sum_probs=159.9

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC---CEEEEEECCCcEEEEecCCCe
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG---QYLASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~Lasgs~Dg~V~iWdl~~~~  317 (493)
                      ..|++|+++++... ...|+||...+..       +...+.+|..+++.+.+.|..   .++++++.||.|++||...+.
T Consensus        22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~-------~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~   93 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCT-GNFVKVYSTATGE-------CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE   93 (792)
T ss_pred             cccccCCcEEEEee-CCEEEEEecchHh-------hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence            67999999887764 5679999987544       333578999999999998843   478899999999999999999


Q ss_pred             eeeeeeccCCCCceEEE------------eeCCCCceeeeeccCccc----------------------cceeeeecCCC
Q 011126          318 RLDGFDVQDTDPSCLYF------------TINHLSQLIPIDVDKEKI----------------------DKTKSLRKSSD  363 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~s~~  363 (493)
                      .++++............            .......+........+.                      ........+..
T Consensus        94 Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge  173 (792)
T KOG1963|consen   94 LLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE  173 (792)
T ss_pred             EEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence            88887655432222110            000000000000000000                      00011111111


Q ss_pred             ceEEEcCCCce--eecccce-----EEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC--C--cEEEEec-CCCc
Q 011126          364 LTCVVLPPKVF--RLLEKPL-----HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI--D--RCLRVFS-HNNY  430 (493)
Q Consensus       364 ~~~~~~~~~~~--~~~~~~~-----~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~--~--~~~~~~~-h~~~  430 (493)
                      ...++.....+  ....+.-     ..-..|...+++.++||++ +++++..||.|.+|.--.  .  ...+.+. |.+.
T Consensus       174 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~  253 (792)
T KOG1963|consen  174 FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE  253 (792)
T ss_pred             EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence            11111111111  1111000     0112366678999999999 999999999999996322  1  1223333 9999


Q ss_pred             EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       431 V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      |++++|++ +|.+|++|+..|.+.+|.+.+++..-+.....+|..+.++||+.+.+....|
T Consensus       254 V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~D  313 (792)
T KOG1963|consen  254 VNSLSFSS-DGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLED  313 (792)
T ss_pred             cceeEEec-CCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecC
Confidence            99999999 9999999999999999999999977788899999999999999887766544

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.41  E-value=3.7e-11  Score=112.30  Aligned_cols=234  Identities=13%  Similarity=0.149  Sum_probs=158.0

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCcccccc-----ccccceeee-cccCCEEEEEEc-------cCCCEEEEEECCCc
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELS-----SLYTGQEFL-AHEGSILTMKFS-------LDGQYLASGGEDGT  307 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~-----~~~~~~~l~-~H~~~I~~l~fs-------pdg~~Lasgs~Dg~  307 (493)
                      ..|+|||..|++-+.|..+++|++........     ......++. .....|+.-+|-       |+..++|+.+.+.-
T Consensus        55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P  134 (406)
T KOG2919|consen   55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP  134 (406)
T ss_pred             ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence            78999999999999999999999864221111     111111121 123457777775       57789999999999


Q ss_pred             EEEEecCCCeeeeeeeccC-----CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCC-Cc---eeecc
Q 011126          308 VRVWKVIEHERLDGFDVQD-----TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP-KV---FRLLE  378 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~---~~~~~  378 (493)
                      |++||..+|+....+..-.     ....++.|++++...+.                 .....+.+++. +.   .....
T Consensus       135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-----------------GykrcirvFdt~RpGr~c~vy~  197 (406)
T KOG2919|consen  135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-----------------GYKRCIRVFDTSRPGRDCPVYT  197 (406)
T ss_pred             eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-----------------cccceEEEeeccCCCCCCcchh
Confidence            9999999998876654322     12345566655533222                 11222333332 11   01111


Q ss_pred             cceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeC-CCeEE
Q 011126          379 KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI-DGKVR  454 (493)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~  454 (493)
                      ...+.-.+..+-|.+++|+|..  .++.++...++-||.-..+.++..+. |.+.|+.++|.+ +|+.|.+|.. |-+|-
T Consensus       198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl  276 (406)
T KOG2919|consen  198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKIL  276 (406)
T ss_pred             hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeEE
Confidence            1111123457788999999976  89999999999999988888888775 999999999999 9999999886 78999


Q ss_pred             EEeCCCCe-EE-EecCCCC---CeEEEEEccCCCEEEEeecCC
Q 011126          455 IWEVRRCQ-VV-DYTDIRE---IVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       455 IWdl~~~~-~~-~~~~~~~---~I~sv~~spdG~~l~s~s~d~  492 (493)
                      .||++..+ ++ .+..|..   .-.-....|+|++|++|+.++
T Consensus       277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG  319 (406)
T KOG2919|consen  277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG  319 (406)
T ss_pred             EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence            99999654 33 3333332   222356689999999997653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=3.1e-12  Score=121.89  Aligned_cols=156  Identities=25%  Similarity=0.313  Sum_probs=128.0

Q ss_pred             cceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccce
Q 011126          276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (493)
Q Consensus       276 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (493)
                      +.+.+.+|.+-|++|.|+.++++|++|+.|..+++|++......+                                   
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k-----------------------------------   92 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK-----------------------------------   92 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc-----------------------------------
Confidence            345678899999999999999999999999999999985422100                                   


Q ss_pred             eeeecCCCceEEEcCCCceeecccceEEEe-cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCC---c
Q 011126          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNN---Y  430 (493)
Q Consensus       356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~---~  430 (493)
                                           ..||+.... .|...|.||+|...+ .+++|..+++|.+.|+.+.+.+.++.|.+   .
T Consensus        93 ---------------------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~  151 (609)
T KOG4227|consen   93 ---------------------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGD  151 (609)
T ss_pred             ---------------------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccc
Confidence                                 013343333 366899999999888 99999999999999999999999998776   9


Q ss_pred             EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe----EEEecCCCCCeEEEEEccCCCEEEEe
Q 011126          431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       431 V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~----~~~~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      |+.+..+| ..+.|++.+.+|.|.|||++..+    ++..........++.|+|--..|+..
T Consensus       152 VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~  212 (609)
T KOG4227|consen  152 VYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV  212 (609)
T ss_pred             eeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence            99999999 68999999999999999999765    44556667788999999987655443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=2.4e-12  Score=124.20  Aligned_cols=140  Identities=31%  Similarity=0.546  Sum_probs=106.0

Q ss_pred             EEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEE
Q 011126          288 LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV  367 (493)
Q Consensus       288 ~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  367 (493)
                      .+++|+++|..|++|+.||++|||++.....+...                                             
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e---------------------------------------------  182 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE---------------------------------------------  182 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh---------------------------------------------
Confidence            78999999999999999999999997655433333                                             


Q ss_pred             EcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE-------------------------
Q 011126          368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-------------------------  421 (493)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~-------------------------  421 (493)
                                       ..|...|.+|.|+|+| .|++-+.| ..+||++.++.+                         
T Consensus       183 -----------------~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~  244 (398)
T KOG0771|consen  183 -----------------IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQE  244 (398)
T ss_pred             -----------------HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCc
Confidence                             3455666666666666 66666666 566666654411                         


Q ss_pred             -E--------------------------EEe---cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCC
Q 011126          422 -L--------------------------RVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDI  469 (493)
Q Consensus       422 -~--------------------------~~~---~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~  469 (493)
                       +                          +..   .-...|++++.++ +|++++.|+.||.|-|++..+.+.+.+  ..|
T Consensus       245 ~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH  323 (398)
T KOG0771|consen  245 TLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAH  323 (398)
T ss_pred             eEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEeehhhh
Confidence             0                          000   0234789999999 999999999999999999999988864  567


Q ss_pred             CCCeEEEEEccCCCEEEEeecC
Q 011126          470 REIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       470 ~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ...|+.+.|+||.++++.-+.+
T Consensus       324 ~~~VT~ltF~Pdsr~~~svSs~  345 (398)
T KOG0771|consen  324 LGFVTGLTFSPDSRYLASVSSD  345 (398)
T ss_pred             eeeeeeEEEcCCcCcccccccC
Confidence            8899999999999999876654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=6.6e-12  Score=132.72  Aligned_cols=230  Identities=14%  Similarity=0.210  Sum_probs=155.5

Q ss_pred             CCCeEEeeecCCeEEEEECCCcc---ccc-ccccccee-eecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126          246 GDHELTLGQRMRRVRVHPVKKQS---REL-SSLYTGQE-FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (493)
Q Consensus       246 ~g~~lasgs~dg~V~vwd~~~~~---~~~-~~~~~~~~-l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  320 (493)
                      |..++++|+.||.|+||+--...   .++ ..+...+. +.+-.+.=.-+.|.....+|+++|.-..|||||........
T Consensus      1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred             chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence            44578999999999999754322   111 11111111 11112222456788766677777778899999998887776


Q ss_pred             eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC--EeEEEEeC
Q 011126          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE--VLDLSWSK  398 (493)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~sp  398 (493)
                      .+......  +          +..+..  ..........+-.|+.+.+++.+.-.. ...+...+.|+..  |..+.+.+
T Consensus      1202 diP~~s~t--~----------vTaLS~--~~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1202 DIPYGSST--L----------VTALSA--DLVHGNIIAAGFADGSVRVYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred             ecccCCCc--c----------ceeecc--cccCCceEEEeecCCceEEeecccCCc-cccceeecccCCcccceeEEeec
Confidence            66554221  1          111111  111233445677788888887765332 2457777888887  99999999


Q ss_pred             CC--eEEEEeCCCeEEEEECCCCcEEEEec---C---CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec---
Q 011126          399 NG--FLLSSSADKTVRLWQVGIDRCLRVFS---H---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT---  467 (493)
Q Consensus       399 ~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~---h---~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~---  467 (493)
                      +|  .|++|+.||.|++||++.......+.   |   ++..+++..++ +..++|+|+. +.|+||++...++-.+.   
T Consensus      1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLSGEQLNIIKYNP 1344 (1387)
T ss_pred             CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc-CCCeeeecCc-ceEEEEecChhhhcccccCc
Confidence            88  79999999999999999853332222   2   34699999999 9999999998 99999999876544222   


Q ss_pred             ----CCCCCeEEEEEccCCCEEEEeecCC
Q 011126          468 ----DIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       468 ----~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                          .....+.+++|||---.+++|+.|.
T Consensus      1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred             ccccCcCCCcceeeecchhHhhhhccCCc
Confidence                2234689999999998888887664

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.38  E-value=5.4e-11  Score=127.75  Aligned_cols=236  Identities=11%  Similarity=0.096  Sum_probs=149.9

Q ss_pred             ccccccccC---ceeeeecccccceec-cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC
Q 011126          221 KRGWLKKLG---AMARIIDRHGSATLK-PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG  296 (493)
Q Consensus       221 k~~w~~~~~---~~~~~~~~~~~~~fs-p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg  296 (493)
                      ..+|..+-.   .+..|...+..++.+ +++.++++|+.||+|+||+..+............++..-.+.+.++.+.+.+
T Consensus      1031 ~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1031 PPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred             CCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence            345554322   233344555555554 5559999999999999999987766644444555555567889999999999


Q ss_pred             CEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126          297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (493)
Q Consensus       297 ~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  376 (493)
                      +.+|.++.||.|++.++......+.....     .........+.++.+............+.......++.|+.+....
T Consensus      1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~-----~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQ-----VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred             CeEEEEcCCCeEEEEEccccccccceeee-----eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence            99999999999999998652111000000     0000000011111111111111111233344455667777653222


Q ss_pred             cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCC--CEEEEEeC--
Q 011126          377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDD--NYFISGSI--  449 (493)
Q Consensus       377 ~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~--~~l~sgs~--  449 (493)
                      ..  ........+.|++++.+|.+ ++++|+..|.+.+||++=+.++..+.  +..+++.+..+|.-+  ...++++.  
T Consensus      1186 ~w--~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1186 AW--RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred             HH--hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccC
Confidence            11  11122345789999999998 99999999999999999998888876  457888888888544  55555554  


Q ss_pred             CCeEEEEeCCCCeE
Q 011126          450 DGKVRIWEVRRCQV  463 (493)
Q Consensus       450 Dg~V~IWdl~~~~~  463 (493)
                      .+.|.+|++.++..
T Consensus      1264 ~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLR 1277 (1431)
T ss_pred             CCceeeeecccCcc
Confidence            68899999998743

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.38  E-value=1e-10  Score=111.25  Aligned_cols=221  Identities=15%  Similarity=0.202  Sum_probs=147.1

Q ss_pred             cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC--cEEEEecCCCe
Q 011126          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKVIEHE  317 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--~V~iWdl~~~~  317 (493)
                      ...|..+...|..|+.+| -++|......+-..       .....-.|..+-|+  ..++|..+.+.  .+++.++..+.
T Consensus        10 ~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-------~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen   10 FIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-------KDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             eeeeccceeEEEccCCCc-eeEEecCchHHhhc-------ccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCc
Confidence            355888889999999998 57777664433111       11123356677776  44666665543  48888888777


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (493)
                      .+..+..+..   .+.+..+....++++                 ...+++++.+...+... +.....|...+.+++.+
T Consensus        80 ~ICe~~fpt~---IL~VrmNr~RLvV~L-----------------ee~IyIydI~~MklLhT-I~t~~~n~~gl~AlS~n  138 (391)
T KOG2110|consen   80 TICEIFFPTS---ILAVRMNRKRLVVCL-----------------EESIYIYDIKDMKLLHT-IETTPPNPKGLCALSPN  138 (391)
T ss_pred             eEEEEecCCc---eEEEEEccceEEEEE-----------------cccEEEEecccceeehh-hhccCCCccceEeeccC
Confidence            6666554422   222222222211111                 22355666555443211 12222455667777777


Q ss_pred             CCC-eEEE--EeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCe-EEEEeCCCCeEEE-ecC--C
Q 011126          398 KNG-FLLS--SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQVVD-YTD--I  469 (493)
Q Consensus       398 p~g-~l~s--gs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~-V~IWdl~~~~~~~-~~~--~  469 (493)
                      +.+ +|+-  ...-|.|.|||+.+-+.+..+. |.+.+.|++|+| +|.+|||++..|+ |||+.+.+|+.+. +..  .
T Consensus       139 ~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~  217 (391)
T KOG2110|consen  139 NANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY  217 (391)
T ss_pred             CCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCce
Confidence            776 6663  2346899999999999988887 999999999999 9999999999997 6999999998773 322  2


Q ss_pred             CCCeEEEEEccCCCEEEEeecCC
Q 011126          470 REIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       470 ~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ...|.+++|+||+++|.+++...
T Consensus       218 ~~~IySL~Fs~ds~~L~~sS~Te  240 (391)
T KOG2110|consen  218 PVSIYSLSFSPDSQFLAASSNTE  240 (391)
T ss_pred             eeEEEEEEECCCCCeEEEecCCC
Confidence            45689999999999998887643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=9e-11  Score=105.75  Aligned_cols=188  Identities=14%  Similarity=0.208  Sum_probs=136.9

Q ss_pred             ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (493)
Q Consensus       235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~  314 (493)
                      ...++++.+.|..+-++.++.|+.++-||++.+.       ...++++|++-|.++.--.....+++|++||++||||..
T Consensus       114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k  186 (325)
T KOG0649|consen  114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-------IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK  186 (325)
T ss_pred             CCccceeEeccCCCcEEEecCCeEEEEEEecCCE-------EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecc
Confidence            3556778889988888888899999999998655       334689999999999985555578899999999999999


Q ss_pred             CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC-CCCEeE
Q 011126          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLD  393 (493)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~  393 (493)
                      +++.+..+.....+                                                     ..+..| ...|-+
T Consensus       187 t~k~v~~ie~yk~~-----------------------------------------------------~~lRp~~g~wiga  213 (325)
T KOG0649|consen  187 TQKHVSMIEPYKNP-----------------------------------------------------NLLRPDWGKWIGA  213 (325)
T ss_pred             ccceeEEeccccCh-----------------------------------------------------hhcCcccCceeEE
Confidence            99987766543221                                                     011223 345777


Q ss_pred             EEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCe
Q 011126          394 LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV  473 (493)
Q Consensus       394 l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I  473 (493)
                      ++.+.+ .|+. +....+.||++++.++..+|.....|.-+.|-   ...+++++..+.|.-|.+..--...........
T Consensus       214 la~~ed-WlvC-GgGp~lslwhLrsse~t~vfpipa~v~~v~F~---~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c  288 (325)
T KOG0649|consen  214 LAVNED-WLVC-GGGPKLSLWHLRSSESTCVFPIPARVHLVDFV---DDCVLIGGEGNHVQSYTLNGVLQANIPVESTAC  288 (325)
T ss_pred             EeccCc-eEEe-cCCCceeEEeccCCCceEEEecccceeEeeee---cceEEEeccccceeeeeeccEEEEeccCCccce
Confidence            777655 5554 45577999999999999999999999999994   467888888889999988643222333333445


Q ss_pred             EEEEEccCCCEEEE
Q 011126          474 SAVCYCPDGKVRQN  487 (493)
Q Consensus       474 ~sv~~spdG~~l~s  487 (493)
                      ++..|+..--.+++
T Consensus       289 ~s~s~~~~p~k~~s  302 (325)
T KOG0649|consen  289 YSASWQTSPIKFIS  302 (325)
T ss_pred             eeecccCCceEEEE
Confidence            55555544433333

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.37  E-value=6.9e-10  Score=103.82  Aligned_cols=177  Identities=13%  Similarity=0.209  Sum_probs=123.1

Q ss_pred             CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC-CCeeeeeeeccCCCCceEEEe
Q 011126          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDVQDTDPSCLYFT  335 (493)
Q Consensus       257 g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~-~~~~~~~~~~~~~~~~~~~~~  335 (493)
                      ..|.|||-.+... ..      ++ ....+|.++++.++  .|++.- .+.|.||... ..+.+..+.....+...+.+.
T Consensus        75 NkviIWDD~k~~~-i~------el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~  143 (346)
T KOG2111|consen   75 NKVIIWDDLKERC-II------EL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC  143 (346)
T ss_pred             ceEEEEecccCcE-EE------EE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence            5799999443221 11      12 25678999999865  566655 4579999987 556666666655444444444


Q ss_pred             eCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCe-EEE
Q 011126          336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKT-VRL  413 (493)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~-V~l  413 (493)
                      +.....++++.             +-.-+.+-+.+......  .+...+..|...|.|++.+.+| ++||+|..|| |||
T Consensus       144 ~~~~k~~LafP-------------g~k~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRI  208 (346)
T KOG2111|consen  144 PTSNKSLLAFP-------------GFKTGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRI  208 (346)
T ss_pred             CCCCceEEEcC-------------CCccceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEE
Confidence            44333332221             11112222222111111  1235678899999999999999 9999999998 899


Q ss_pred             EECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          414 WQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       414 Wd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      ||..++..+..++   ....|.||+|+| +..+|++.|..|+|+|+.++.
T Consensus       209 Fdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  209 FDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence            9999999999997   557899999999 999999999999999999875

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.36  E-value=3.8e-11  Score=121.34  Aligned_cols=210  Identities=17%  Similarity=0.218  Sum_probs=138.2

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcc-ccccccccce---------------------------eee
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS-RELSSLYTGQ---------------------------EFL  281 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~-~~~~~~~~~~---------------------------~l~  281 (493)
                      ++.+|.+.+.+++++.+|+.+|+|+.|..|.||+-+-.. ...+.....|                           ...
T Consensus        48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~  127 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS  127 (1081)
T ss_pred             ccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH
Confidence            566788999999999999999999999999999864211 0011000000                           011


Q ss_pred             cc--cCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeec---cCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126          282 AH--EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV---QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (493)
Q Consensus       282 ~H--~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (493)
                      .|  ...|.+++|..||++|+.|-.||+|.|-+- +++....+.-   ...++..+.++++......             
T Consensus       128 K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~-------------  193 (1081)
T KOG1538|consen  128 KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRN-------------  193 (1081)
T ss_pred             hhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCcc-------------
Confidence            12  235777888889999999999999988864 4444444443   3445556666555421000             


Q ss_pred             eeecCCCceEEEcCCC--ceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEE
Q 011126          357 SLRKSSDLTCVVLPPK--VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT  432 (493)
Q Consensus       357 ~~~~s~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~  432 (493)
                           .-..++-|...  ...+..+.+..-..-.-...||.+.++| +++.|+.|+.+++|- +.|-.+.+.. ....|+
T Consensus       194 -----di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIW  267 (1081)
T KOG1538|consen  194 -----DILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIW  267 (1081)
T ss_pred             -----ceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEE
Confidence                 00011112111  1111222222222234456799999999 999999999999996 4566666665 678999


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          433 SVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       433 ~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      .++..| ++++++.|+.||+|..|++-.
T Consensus       268 tV~~~P-NsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  268 TVQAKP-NSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EEEEcc-CCceEEEEEccCeeehhhhHH
Confidence            999999 999999999999999999853

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.36  E-value=3.7e-10  Score=112.82  Aligned_cols=231  Identities=11%  Similarity=0.108  Sum_probs=135.3

Q ss_pred             cccceeccCCCeEEeee-cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEEEecCC
Q 011126          238 HGSATLKPGDHELTLGQ-RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIE  315 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs-~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~iWdl~~  315 (493)
                      ...++++|++++|++++ .++.|.+|++.... .+..   ..... ..+....|.|+|++++|++++. ++.|.+|++.+
T Consensus        37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-~l~~---~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         37 VQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-ALTF---AAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             CccEEECCCCCEEEEEECCCCcEEEEEECCCC-ceEE---eeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence            44589999999887654 58899999986321 1111   11111 2234678999999999888764 88999999964


Q ss_pred             Ceee-eeeec--cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee-eccc--ceEEEecCCC
Q 011126          316 HERL-DGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR-LLEK--PLHEFQGHSS  389 (493)
Q Consensus       316 ~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~--~~~~~~~h~~  389 (493)
                      ...+ .....  ....+..+.+.++.. .+              ......+..+.+|+..... +...  ....... ..
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~-~l--------------~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~  175 (330)
T PRK11028        112 DGIPVAPIQIIEGLEGCHSANIDPDNR-TL--------------WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GA  175 (330)
T ss_pred             CCCCCCceeeccCCCcccEeEeCCCCC-EE--------------EEeeCCCCEEEEEEECCCCcccccCCCceecCC-CC
Confidence            3211 11111  111223333332221 11              1222333445555443211 1000  0011111 23


Q ss_pred             CEeEEEEeCCC-eEEEEeC-CCeEEEEECCC--Cc--EEEEec-------CCCcEEEEEEccCCCCEEEEEeC-CCeEEE
Q 011126          390 EVLDLSWSKNG-FLLSSSA-DKTVRLWQVGI--DR--CLRVFS-------HNNYVTSVAFNPVDDNYFISGSI-DGKVRI  455 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~-Dg~V~lWd~~~--~~--~~~~~~-------h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~I  455 (493)
                      ....++|+|+| +++++.. +++|.+|++..  +.  .+..+.       +......+.|+| ++++|+++.. ++.|.+
T Consensus       176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v  254 (330)
T PRK11028        176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISV  254 (330)
T ss_pred             CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEE
Confidence            45689999999 6666654 99999999973  22  233322       122344689999 9998888754 789999


Q ss_pred             EeCCCCe----EEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          456 WEVRRCQ----VVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       456 Wdl~~~~----~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      |++....    ++...........+.++|||++|++++.
T Consensus       255 ~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        255 FSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             EEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence            9996432    2222222335668999999999998874

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.1e-10  Score=121.22  Aligned_cols=187  Identities=13%  Similarity=0.115  Sum_probs=127.4

Q ss_pred             eeeeecccccceeccCCCeEEeeec---CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCC
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG  306 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~---dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg  306 (493)
                      ++.+...+...+|+|+|+.|+..+.   +..|.+|++......        .+..+.+.+....|+|||+.|+ +.+.++
T Consensus       197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--------~l~~~~g~~~~~~~SPDG~~la~~~~~~g  268 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--------LVGNFPGMTFAPRFSPDGRKVVMSLSQGG  268 (435)
T ss_pred             EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--------EeecCCCcccCcEECCCCCEEEEEEecCC
Confidence            4445556667899999999888653   468999998754321        2445667788899999999775 556666


Q ss_pred             c--EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          307 T--VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       307 ~--V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                      .  |.+||+.++..                                                               ..+
T Consensus       269 ~~~Iy~~d~~~~~~---------------------------------------------------------------~~L  285 (435)
T PRK05137        269 NTDIYTMDLRSGTT---------------------------------------------------------------TRL  285 (435)
T ss_pred             CceEEEEECCCCce---------------------------------------------------------------EEc
Confidence            5  55566654432                                                               111


Q ss_pred             ecCCCCEeEEEEeCCC-eEEEEe-CC--CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC---CeEEEEe
Q 011126          385 QGHSSEVLDLSWSKNG-FLLSSS-AD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWE  457 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~sgs-~D--g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWd  457 (493)
                      ..+........|+|+| .|+..+ .+  ..|.+||+..+.......+...+....|+| ++++|+....+   ..|.+||
T Consensus       286 t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d  364 (435)
T PRK05137        286 TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMK  364 (435)
T ss_pred             cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEE
Confidence            2233344567999999 666554 33  368888987776655444556677889999 99998877654   3688999


Q ss_pred             CCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          458 VRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       458 l~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      +.++....+.. ...+..+.|+|||+.|+..+.
T Consensus       365 ~~~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        365 PDGSGERILTS-GFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             CCCCceEeccC-CCCCCCCeECCCCCEEEEEEc
Confidence            87665443332 235678899999999887654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=9.1e-11  Score=121.62  Aligned_cols=187  Identities=17%  Similarity=0.202  Sum_probs=124.9

Q ss_pred             eeeeecccccceeccCCCeEEeeec---CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCC
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG  306 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~---dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg  306 (493)
                      ++.+...+...+|+|+|+.|+..+.   ...|.+|++......        .+..+.+......|+|||+.|+ +.+.+|
T Consensus       199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g  270 (433)
T PRK04922        199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--------LVASFRGINGAPSFSPDGRRLALTLSRDG  270 (433)
T ss_pred             eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--------EeccCCCCccCceECCCCCEEEEEEeCCC
Confidence            3344445667899999999998763   346999998754421        1233444456789999999775 455555


Q ss_pred             --cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          307 --TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       307 --~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                        .|++||+.+++..                                                               .+
T Consensus       271 ~~~Iy~~d~~~g~~~---------------------------------------------------------------~l  287 (433)
T PRK04922        271 NPEIYVMDLGSRQLT---------------------------------------------------------------RL  287 (433)
T ss_pred             CceEEEEECCCCCeE---------------------------------------------------------------EC
Confidence              4888887655421                                                               11


Q ss_pred             ecCCCCEeEEEEeCCC-eEEEEe-CCCe--EEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC---eEEEEe
Q 011126          385 QGHSSEVLDLSWSKNG-FLLSSS-ADKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWE  457 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~sgs-~Dg~--V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg---~V~IWd  457 (493)
                      ..|.......+|+|+| .|+..+ .++.  |.++++.+++......+......++|+| ++++|+..+.++   .|++||
T Consensus       288 t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d  366 (433)
T PRK04922        288 TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMD  366 (433)
T ss_pred             ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEE
Confidence            2233334567999999 666554 4444  6666777766544433445566799999 999988765443   699999


Q ss_pred             CCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          458 VRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       458 l~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      +.+++...+... .......|+|||+.++..+.
T Consensus       367 ~~~g~~~~Lt~~-~~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        367 LSTGSVRTLTPG-SLDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             CCCCCeEECCCC-CCCCCceECCCCCEEEEEEe
Confidence            998877654432 24556799999999887664

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=2.2e-11  Score=114.59  Aligned_cols=170  Identities=20%  Similarity=0.307  Sum_probs=132.2

Q ss_pred             CEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126          297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (493)
Q Consensus       297 ~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  376 (493)
                      ..+|++...|.|++||..+++.+..++.+......+.|.....              .-..+..+.++.+.+|+.+....
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds--------------~h~v~s~ssDG~Vr~wD~Rs~~e  106 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDS--------------PHGVISCSSDGTVRLWDIRSQAE  106 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCC--------------CCeeEEeccCCeEEEEEeecchh
Confidence            5688899999999999999999999998887777666654321              12234677889999999887653


Q ss_pred             cccceEEEecCC-CCEeEEEEeCCC-eEEEEe----CCCeEEEEECCCCcE-EEEec--CCCcEEEEEEccCCCCEEEEE
Q 011126          377 LEKPLHEFQGHS-SEVLDLSWSKNG-FLLSSS----ADKTVRLWQVGIDRC-LRVFS--HNNYVTSVAFNPVDDNYFISG  447 (493)
Q Consensus       377 ~~~~~~~~~~h~-~~V~~l~~sp~g-~l~sgs----~Dg~V~lWd~~~~~~-~~~~~--h~~~V~~v~fsp~d~~~l~sg  447 (493)
                        .+...+..|. .+..+++.+-.+ ++++|.    .|-.|.+||++..+. +..+.  |.+.||+++|+|.+.++|++|
T Consensus       107 --~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG  184 (376)
T KOG1188|consen  107 --SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG  184 (376)
T ss_pred             --hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence              3445556665 466677766444 666664    467799999998766 66664  999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCe----EEEecCCCCCeEEEEEccCC
Q 011126          448 SIDGKVRIWEVRRCQ----VVDYTDIREIVSAVCYCPDG  482 (493)
Q Consensus       448 s~Dg~V~IWdl~~~~----~~~~~~~~~~I~sv~~spdG  482 (493)
                      |.||.|.|+|+..-.    ++....+...|..+.|..++
T Consensus       185 SvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  185 SVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK  223 (376)
T ss_pred             cccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence            999999999998542    44567788889999999988

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.4e-10  Score=119.97  Aligned_cols=186  Identities=13%  Similarity=0.099  Sum_probs=122.0

Q ss_pred             eecccccceeccCCCeEEeee---cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCC--c
Q 011126          234 IIDRHGSATLKPGDHELTLGQ---RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDG--T  307 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs---~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg--~  307 (493)
                      ....+...+|+|+|+.|+..+   ....|.+|++.......        +....+.+..+.|+|||++|+.. ..+|  .
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~  268 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------VASFPRHNGAPAFSPDGSKLAFALSKTGSLN  268 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------ccCCCCCcCCeEECCCCCEEEEEEcCCCCcE
Confidence            334555689999999998654   34578999987543211        11122334468999999988754 4455  4


Q ss_pred             EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (493)
                      |++||+.+++..                                                               .+..+
T Consensus       269 I~~~d~~tg~~~---------------------------------------------------------------~lt~~  285 (429)
T PRK03629        269 LYVMDLASGQIR---------------------------------------------------------------QVTDG  285 (429)
T ss_pred             EEEEECCCCCEE---------------------------------------------------------------EccCC
Confidence            777887654321                                                               11112


Q ss_pred             CCCEeEEEEeCCC-eEEEEeC-CCeEEE--EECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC---CeEEEEeCCC
Q 011126          388 SSEVLDLSWSKNG-FLLSSSA-DKTVRL--WQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRR  460 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs~-Dg~V~l--Wd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWdl~~  460 (493)
                      ...+....|+|+| .|+..+. ++...|  +|+.++.......+........|+| ++++|+..+.+   ..|++||+.+
T Consensus       286 ~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~  364 (429)
T PRK03629        286 RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLAT  364 (429)
T ss_pred             CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCC
Confidence            3345678999999 6665554 344444  4666665544433555667899999 99998876654   3589999998


Q ss_pred             CeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          461 CQVVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       461 ~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ++...+... .......|+|||+.|+.++.+.
T Consensus       365 g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~  395 (429)
T PRK03629        365 GGVQVLTDT-FLDETPSIAPNGTMVIYSSSQG  395 (429)
T ss_pred             CCeEEeCCC-CCCCCceECCCCCEEEEEEcCC
Confidence            876655432 2345678999999999887653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.33  E-value=6.8e-12  Score=114.18  Aligned_cols=151  Identities=18%  Similarity=0.279  Sum_probs=116.9

Q ss_pred             eEEeeecCCeEEEEECCCccccccc---cccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126          249 ELTLGQRMRRVRVHPVKKQSRELSS---LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (493)
Q Consensus       249 ~lasgs~dg~V~vwd~~~~~~~~~~---~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~  325 (493)
                      +|++|..+|.|.+||+....+.+.-   ......+..|..+|.++.|.+.-..=++|+.+..+.+|.+........+   
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~---  243 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI---  243 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc---
Confidence            5678899999999999876443321   1122235679999999999886556678888888999987533110000   


Q ss_pred             CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEE
Q 011126          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS  404 (493)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~s  404 (493)
                                                                             -....-..-.|..+..-|++ ++||
T Consensus       244 -------------------------------------------------------~~e~~lknpGv~gvrIRpD~KIlAT  268 (323)
T KOG0322|consen  244 -------------------------------------------------------RKEITLKNPGVSGVRIRPDGKILAT  268 (323)
T ss_pred             -------------------------------------------------------cceEEecCCCccceEEccCCcEEee
Confidence                                                                   00011123457788899999 9999


Q ss_pred             EeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126          405 SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       405 gs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl  458 (493)
                      ++-|+.||||..++..++.+++ |.+.|++++|+| +.+++|+++.|++|.+|++
T Consensus       269 AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  269 AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL  322 (323)
T ss_pred             cccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence            9999999999999999999998 999999999999 8999999999999999987

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=2.3e-10  Score=119.59  Aligned_cols=249  Identities=17%  Similarity=0.253  Sum_probs=148.1

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~  315 (493)
                      ..+.+.++||+++++|+|..||+|.||.--....   .-...+.+.-|...|+++.|+++|.+|+|||..|.+.+|.+.+
T Consensus       206 f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~---~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  206 FNITCVALSPNERYLAAGDSDGRILVWRDFGSSD---DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             ccceeEEeccccceEEEeccCCcEEEEecccccc---ccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            3366789999999999999999999997654211   1223446778999999999999999999999999999999998


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee-----------------------------eeecCCCceE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK-----------------------------SLRKSSDLTC  366 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~s~~~~~  366 (493)
                      ++ .+-+.-...++..+.+++++....+.+  ..+.+....                             .+.-......
T Consensus       283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~--~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~  359 (792)
T KOG1963|consen  283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVL--EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS  359 (792)
T ss_pred             CC-cccccccCCeeEEEEEcCCCCeEEEEe--cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence            87 333333333344444443332211111  111110000                             0000010111


Q ss_pred             EEcCCCce-----eecc-cceEE-----Eec------CCCCEeEEEEeCCC-eEEEEe--------CC--CeEEEEECCC
Q 011126          367 VVLPPKVF-----RLLE-KPLHE-----FQG------HSSEVLDLSWSKNG-FLLSSS--------AD--KTVRLWQVGI  418 (493)
Q Consensus       367 ~~~~~~~~-----~~~~-~~~~~-----~~~------h~~~V~~l~~sp~g-~l~sgs--------~D--g~V~lWd~~~  418 (493)
                      .++..+..     .+.. +.+..     ...      +.-.++.++.+-.| +++|.-        .|  -.+++|....
T Consensus       360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~  439 (792)
T KOG1963|consen  360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP  439 (792)
T ss_pred             eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence            11111111     1000 11111     111      22346667777677 777763        23  3477897654


Q ss_pred             CcEE----EEe--cCCCcEEEEEEccCCCC-EEEEEeCCCeEEEEeCCCCe------------EEEecCCCCCeEEEEEc
Q 011126          419 DRCL----RVF--SHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQ------------VVDYTDIREIVSAVCYC  479 (493)
Q Consensus       419 ~~~~----~~~--~h~~~V~~v~fsp~d~~-~l~sgs~Dg~V~IWdl~~~~------------~~~~~~~~~~I~sv~~s  479 (493)
                      ...-    ..+  .|...+...+|.+.... .+++++.||.++||-+.+-+            .+. ..|+.++++++|+
T Consensus       440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~-sy~k~~i~a~~fs  518 (792)
T KOG1963|consen  440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG-SYHKTPITALCFS  518 (792)
T ss_pred             CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee-ccccCcccchhhc
Confidence            3322    222  28776666666542333 89999999999999883221            111 2378899999999


Q ss_pred             cCCCEEEEeecC
Q 011126          480 PDGKVRQNSACN  491 (493)
Q Consensus       480 pdG~~l~s~s~d  491 (493)
                      .||..|+++..+
T Consensus       519 ~dGslla~s~~~  530 (792)
T KOG1963|consen  519 QDGSLLAVSFDD  530 (792)
T ss_pred             CCCcEEEEecCC
Confidence            999999888654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.32  E-value=2.9e-11  Score=112.98  Aligned_cols=150  Identities=17%  Similarity=0.261  Sum_probs=124.7

Q ss_pred             ccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCC
Q 011126          283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS  362 (493)
Q Consensus       283 H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  362 (493)
                      -..+|+|.+|++|+..+|.+-....|.||.....+.                                            
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------------------------------------   44 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------------------------------------   44 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence            356899999999999999999999999998654331                                            


Q ss_pred             CceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECC-CCc---EEEEecCCCcEEEEEEc
Q 011126          363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG-IDR---CLRVFSHNNYVTSVAFN  437 (493)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~-~~~---~~~~~~h~~~V~~v~fs  437 (493)
                                     -++.+++..|...|+.|.|+|.. .|++|+.|..-+||... .++   .+..+.++..+++|.|+
T Consensus        45 ---------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws  109 (361)
T KOG1523|consen   45 ---------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS  109 (361)
T ss_pred             ---------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeec
Confidence                           13467788899999999999998 99999999999999984 333   23444699999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCeEE-----EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          438 PVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       438 p~d~~~l~sgs~Dg~V~IWdl~~~~~~-----~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      | .++.||+|+.-..|.||-+....--     .-..+...|+++.|+|++-.|++|++|+
T Consensus       110 P-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen  110 P-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             C-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence            9 9999999999999999987644311     1245678899999999999999999885

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=2.1e-10  Score=118.55  Aligned_cols=188  Identities=20%  Similarity=0.213  Sum_probs=123.4

Q ss_pred             eeecccccceeccCCCeEEeeecC---CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCCcE
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTV  308 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~V  308 (493)
                      .+...+...+|+|+|+.|+..+..   ..|.+|++......        .+....+.+....|+|||+.|+ +.+.+|..
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~  264 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--------VVANFKGSNSAPAWSPDGRTLAVALSRDGNS  264 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--------EeecCCCCccceEECCCCCEEEEEEccCCCc
Confidence            344556678999999999886643   45999998755421        1223345567899999999886 56778887


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      .||.+.....                                                             ....+..|.
T Consensus       265 ~Iy~~d~~~~-------------------------------------------------------------~~~~lt~~~  283 (427)
T PRK02889        265 QIYTVNADGS-------------------------------------------------------------GLRRLTQSS  283 (427)
T ss_pred             eEEEEECCCC-------------------------------------------------------------CcEECCCCC
Confidence            7776521100                                                             011122233


Q ss_pred             CCEeEEEEeCCC-eEEEEe-CCCeEEEEEC--CCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC---eEEEEeCCCC
Q 011126          389 SEVLDLSWSKNG-FLLSSS-ADKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRC  461 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~sgs-~Dg~V~lWd~--~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg---~V~IWdl~~~  461 (493)
                      .......|+|+| .|+..+ .++...||.+  .++................|+| ++++|+..+.++   .|++||+.++
T Consensus       284 ~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        284 GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCC
Confidence            344567899999 555444 4566666654  4444333332344455789999 999998777654   6999999988


Q ss_pred             eEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          462 QVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       462 ~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +...+... .......|+|||+.|+.++.+
T Consensus       363 ~~~~lt~~-~~~~~p~~spdg~~l~~~~~~  391 (427)
T PRK02889        363 QVTALTDT-TRDESPSFAPNGRYILYATQQ  391 (427)
T ss_pred             CeEEccCC-CCccCceECCCCCEEEEEEec
Confidence            77655433 334678999999999887643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.28  E-value=1.1e-09  Score=109.51  Aligned_cols=217  Identities=13%  Similarity=0.168  Sum_probs=125.8

Q ss_pred             EEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEEEEecCC-Cee--eeeeecc
Q 011126          250 LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIE-HER--LDGFDVQ  325 (493)
Q Consensus       250 lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~iWdl~~-~~~--~~~~~~~  325 (493)
                      .++...++.|.+|++... ..+   ...+.+. +.+....|.++|++++|++++ .++.|.+|++.. +..  +......
T Consensus         5 y~~~~~~~~I~~~~~~~~-g~l---~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~   79 (330)
T PRK11028          5 YIASPESQQIHVWNLNHE-GAL---TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP   79 (330)
T ss_pred             EEEcCCCCCEEEEEECCC-Cce---eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC
Confidence            344467899999999532 111   1222333 345677899999999987765 578899999973 322  1222111


Q ss_pred             CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE-E
Q 011126          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-L  403 (493)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l-~  403 (493)
                       ..+..+.+.+++. .++...              ..++.+.+|+........+.+..+. +......++++|++ ++ +
T Consensus        80 -~~p~~i~~~~~g~-~l~v~~--------------~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v  142 (330)
T PRK11028         80 -GSPTHISTDHQGR-FLFSAS--------------YNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWV  142 (330)
T ss_pred             -CCceEEEECCCCC-EEEEEE--------------cCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEE
Confidence             1223333333221 111111              1233344443321111111222222 23446778999998 55 5


Q ss_pred             EEeCCCeEEEEECCCCcEEE-------EecCCCcEEEEEEccCCCCEEEEEeC-CCeEEEEeCCC--CeE--EE-ecCC-
Q 011126          404 SSSADKTVRLWQVGIDRCLR-------VFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRR--CQV--VD-YTDI-  469 (493)
Q Consensus       404 sgs~Dg~V~lWd~~~~~~~~-------~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~IWdl~~--~~~--~~-~~~~-  469 (493)
                      +...++.|.+||+.+...+.       ..........+.|+| ++++|+++.. +++|.+|++..  +++  +. ...+ 
T Consensus       143 ~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p  221 (330)
T PRK11028        143 PCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP  221 (330)
T ss_pred             eeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC
Confidence            66677999999997643221       112344567899999 9999888776 89999999973  332  21 1111 


Q ss_pred             -----CCCeEEEEEccCCCEEEEee
Q 011126          470 -----REIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       470 -----~~~I~sv~~spdG~~l~s~s  489 (493)
                           ......+.++|||++++++.
T Consensus       222 ~~~~~~~~~~~i~~~pdg~~lyv~~  246 (330)
T PRK11028        222 ADFSDTRWAADIHITPDGRHLYACD  246 (330)
T ss_pred             CcCCCCccceeEEECCCCCEEEEec
Confidence                 11234688999999999874

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.28  E-value=2.1e-12  Score=133.29  Aligned_cols=150  Identities=27%  Similarity=0.522  Sum_probs=120.2

Q ss_pred             cccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccc
Q 011126          274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID  353 (493)
Q Consensus       274 ~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (493)
                      ....+.+.+|..+|+|+.|...|.++++|+.|..|+||...++.+                                   
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~-----------------------------------  224 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC-----------------------------------  224 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh-----------------------------------
Confidence            334456789999999999999999999999999999999766553                                   


Q ss_pred             ceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcE
Q 011126          354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYV  431 (493)
Q Consensus       354 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V  431 (493)
                                                 +....||.+.|++++.+.++ ++++++.|..|++|.+.++.++.++. |++.|
T Consensus       225 ---------------------------lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgav  277 (1113)
T KOG0644|consen  225 ---------------------------LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAV  277 (1113)
T ss_pred             ---------------------------hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccce
Confidence                                       34457899999999999998 99999999999999999999998885 99999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe------cCCCCCeEEEEEccCCCEEEEeecC
Q 011126          432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY------TDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       432 ~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~------~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ++|+|+|     +.+.+.||++++||.+ .....+      .....-+-++.|...|.-+++++.+
T Consensus       278 taiafsP-----~~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d  337 (1113)
T KOG0644|consen  278 TAIAFSP-----RASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD  337 (1113)
T ss_pred             eeeccCc-----cccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence            9999999     4588899999999998 111111      1222345556666666666665543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=2.2e-10  Score=121.49  Aligned_cols=239  Identities=15%  Similarity=0.223  Sum_probs=148.2

Q ss_pred             ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcEEEEecCCC
Q 011126          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      ..+.|+|-...++++....+|+|||+++... +..+...   ......|+.|.+-.  |..+|++|+.||.||||+-...
T Consensus      1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-l~~F~n~---~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRL-LNGFDNG---AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             ceeeecCCCceeEEcCCcceEEEEecccCce-eccccCC---CCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            3478999999999999889999999987653 2221111   12345789999866  5568999999999999974221


Q ss_pred             e-eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEE
Q 011126          317 E-RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDL  394 (493)
Q Consensus       317 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l  394 (493)
                      . ....+...-...........+.+  +.+++....   ...+..+.-..+.+|+...-.    .++.+ .+-..-|+.+
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~--~v~dWqQ~~---G~Ll~tGd~r~IRIWDa~~E~----~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTG--LVVDWQQQS---GHLLVTGDVRSIRIWDAHKEQ----VVADIPYGSSTLVTAL 1214 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCC--eeeehhhhC---CeEEecCCeeEEEEEecccce----eEeecccCCCccceee
Confidence            1 11111111111111111111212  112221111   112233335566777664321    12222 2344566766


Q ss_pred             EEeCC-C-eEEEEeCCCeEEEEECCCCcE---EEEec-CCCc--EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE--
Q 011126          395 SWSKN-G-FLLSSSADKTVRLWQVGIDRC---LRVFS-HNNY--VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--  464 (493)
Q Consensus       395 ~~sp~-g-~l~sgs~Dg~V~lWd~~~~~~---~~~~~-h~~~--V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~--  464 (493)
                      .-+-. | ++++|..||.|++||.+....   +...+ |++.  |..+.+.+..-..|++|+.||.|++||++.....  
T Consensus      1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~ 1294 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETF 1294 (1387)
T ss_pred             cccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccc
Confidence            54433 4 999999999999999986543   33443 7777  9999999833345999999999999999984322  


Q ss_pred             -EecCC---CCCeEEEEEccCCCEEEEeec
Q 011126          465 -DYTDI---REIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       465 -~~~~~---~~~I~sv~~spdG~~l~s~s~  490 (493)
                       ....|   ...++++..|++..++++|+.
T Consensus      1295 ~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1295 LTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             ceeeeccccCccceeeeeccCCCeeeecCc
Confidence             22222   335999999999999999985

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.27  E-value=4.6e-11  Score=118.37  Aligned_cols=167  Identities=23%  Similarity=0.408  Sum_probs=121.5

Q ss_pred             cccccceeccCCC-eEEeeecCCeEEEEECCCcccc----ccccccc-----------------eeeecccCCEEEEEEc
Q 011126          236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRE----LSSLYTG-----------------QEFLAHEGSILTMKFS  293 (493)
Q Consensus       236 ~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~----~~~~~~~-----------------~~l~~H~~~I~~l~fs  293 (493)
                      ..+.++.|-|.+. .++++..+|.+.+++..-....    ...+...                 ..+.--++.|+..+|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            5566788877664 5566778999999975321110    0011000                 1122234579999999


Q ss_pred             cCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc
Q 011126          294 LDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV  373 (493)
Q Consensus       294 pdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  373 (493)
                      |||++||+.+.||.+||+|..+.+.+..+                                                   
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~m---------------------------------------------------  328 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLGVM---------------------------------------------------  328 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHHHH---------------------------------------------------
Confidence            99999999999999999998765532221                                                   


Q ss_pred             eeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccC------------
Q 011126          374 FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV------------  439 (493)
Q Consensus       374 ~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~------------  439 (493)
                                 +.--+..+|++|+||| +|++|++|.-|.||.+..++.+..-. |..+|+.|+|.|-            
T Consensus       329 -----------kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~  397 (636)
T KOG2394|consen  329 -----------KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSG  397 (636)
T ss_pred             -----------HhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccccccccccc
Confidence                       2234678999999999 99999999999999999988887754 9999999999841            


Q ss_pred             ----------------------C-------------CCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          440 ----------------------D-------------DNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       440 ----------------------d-------------~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                                            +             ...|.+.+.|-.+.+||+..-.+.
T Consensus       398 ~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~  457 (636)
T KOG2394|consen  398 MDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV  457 (636)
T ss_pred             ccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence                                  0             124778889999999999754433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=8e-10  Score=114.68  Aligned_cols=162  Identities=13%  Similarity=0.107  Sum_probs=117.3

Q ss_pred             CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC---CCcEEEEecCCCeeeeeeeccCCCCceE
Q 011126          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCL  332 (493)
Q Consensus       256 dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~V~iWdl~~~~~~~~~~~~~~~~~~~  332 (493)
                      ...|.++|.....        .+.+..|...+...+|+|||+.|+..+.   +..|.+||+.+++..             
T Consensus       181 ~~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-------------  239 (435)
T PRK05137        181 IKRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-------------  239 (435)
T ss_pred             ceEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-------------
Confidence            3478888875332        2245678889999999999999888764   467999998766421             


Q ss_pred             EEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE-EEEeCCCe
Q 011126          333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKT  410 (493)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l-~sgs~Dg~  410 (493)
                                                                        .+..+.+.+...+|+|+| .| ++.+.++.
T Consensus       240 --------------------------------------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~  269 (435)
T PRK05137        240 --------------------------------------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGN  269 (435)
T ss_pred             --------------------------------------------------EeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence                                                              111233455678999999 44 56666655


Q ss_pred             --EEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC-C--CeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEE
Q 011126          411 --VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-D--GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVR  485 (493)
Q Consensus       411 --V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-D--g~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l  485 (493)
                        |.+||+.++.......+....+...|+| +++.|+..+. +  ..|++||+.+++...+......+....|+|||+.|
T Consensus       270 ~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i  348 (435)
T PRK05137        270 TDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI  348 (435)
T ss_pred             ceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence              7777998887765555666778899999 9998887764 3  36899999887776655555567778999999999


Q ss_pred             EEee
Q 011126          486 QNSA  489 (493)
Q Consensus       486 ~s~s  489 (493)
                      +...
T Consensus       349 a~~~  352 (435)
T PRK05137        349 AFTK  352 (435)
T ss_pred             EEEE
Confidence            8765

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=6.5e-10  Score=106.58  Aligned_cols=224  Identities=12%  Similarity=0.168  Sum_probs=158.6

Q ss_pred             CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC-EEEEEECC--CcEEEEecCCCeeeeeee
Q 011126          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGED--GTVRVWKVIEHERLDGFD  323 (493)
Q Consensus       247 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~D--g~V~iWdl~~~~~~~~~~  323 (493)
                      ...|++|-.+|.+.+|..+.....-+.+   ..+..| ..+..|.-++... .+|+||..  ..+.|||+...+++..-+
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l---~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK  190 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKL---IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK  190 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccc---eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc
Confidence            3467788899999999987443221111   122223 5677777777555 55668888  789999999886665554


Q ss_pred             ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE
Q 011126          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL  402 (493)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l  402 (493)
                      ........+....-....    .+-. ......++..+.-..+.+|+++.   ..+|+..+.--..+|+++..-|.+ .+
T Consensus       191 NvpnD~L~LrVPvW~tdi----~Fl~-g~~~~~fat~T~~hqvR~YDt~~---qRRPV~~fd~~E~~is~~~l~p~gn~I  262 (412)
T KOG3881|consen  191 NVPNDRLGLRVPVWITDI----RFLE-GSPNYKFATITRYHQVRLYDTRH---QRRPVAQFDFLENPISSTGLTPSGNFI  262 (412)
T ss_pred             CCCCccccceeeeeeccc----eecC-CCCCceEEEEecceeEEEecCcc---cCcceeEeccccCcceeeeecCCCcEE
Confidence            443332222211111000    0000 11134445556666777777763   357888888888999999999999 99


Q ss_pred             EEEeCCCeEEEEECCCCcEEEE-ec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEcc
Q 011126          403 LSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP  480 (493)
Q Consensus       403 ~sgs~Dg~V~lWd~~~~~~~~~-~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~sp  480 (493)
                      ++|..-+.+..+|++.+..+.. ++ ..+.|.+|..+| ...++++++.|..|||+|+.+.+++.....+..++.|-+.+
T Consensus       263 y~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~  341 (412)
T KOG3881|consen  263 YTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRD  341 (412)
T ss_pred             EEecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecC
Confidence            9999999999999999998877 44 788999999999 88999999999999999999988887666777788888876


Q ss_pred             CCC
Q 011126          481 DGK  483 (493)
Q Consensus       481 dG~  483 (493)
                      +-.
T Consensus       342 ~~n  344 (412)
T KOG3881|consen  342 DVN  344 (412)
T ss_pred             Ccc
Confidence            543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=1.7e-10  Score=115.16  Aligned_cols=102  Identities=12%  Similarity=0.253  Sum_probs=84.2

Q ss_pred             CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~--~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      ...|++|.|+.+| .++.|...|.|.|||+++.+++..-.|.  -+|..+.|.+.++.--+.......++|||-.+|+..
T Consensus       228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~  307 (703)
T KOG2321|consen  228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPM  307 (703)
T ss_pred             cCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCce
Confidence            3459999999999 9999999999999999999998887764  588999998843333333345678999999999999


Q ss_pred             EecCCCCCeEEEEEccCCCEEEEee
Q 011126          465 DYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       465 ~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      ........++.+|+-|++-.++++-
T Consensus       308 asiEpt~~lND~C~~p~sGm~f~An  332 (703)
T KOG2321|consen  308 ASIEPTSDLNDFCFVPGSGMFFTAN  332 (703)
T ss_pred             eeccccCCcCceeeecCCceEEEec
Confidence            8777777899999999987777664

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.25  E-value=8.9e-10  Score=113.71  Aligned_cols=182  Identities=17%  Similarity=0.218  Sum_probs=123.5

Q ss_pred             ccccceeccCCCeEEeeecC---CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE-EECCC--cEEE
Q 011126          237 RHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDG--TVRV  310 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg--~V~i  310 (493)
                      .+....|+|+|++|+.....   ..|++|++.+....        .+..+.+.+.+++|+|||+.|+. .+.++  .|++
T Consensus       191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~--------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~  262 (417)
T TIGR02800       191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE--------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV  262 (417)
T ss_pred             ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE--------EeecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence            34557899999999887643   47999998754321        12335566778999999997764 44444  4777


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      |++.++...                                                               .+..+...
T Consensus       263 ~d~~~~~~~---------------------------------------------------------------~l~~~~~~  279 (417)
T TIGR02800       263 MDLDGKQLT---------------------------------------------------------------RLTNGPGI  279 (417)
T ss_pred             EECCCCCEE---------------------------------------------------------------ECCCCCCC
Confidence            777554321                                                               01112222


Q ss_pred             EeEEEEeCCC-eEEEEeC-CC--eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC---eEEEEeCCCCeE
Q 011126          391 VLDLSWSKNG-FLLSSSA-DK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQV  463 (493)
Q Consensus       391 V~~l~~sp~g-~l~sgs~-Dg--~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg---~V~IWdl~~~~~  463 (493)
                      .....|+|+| .|+..+. .+  .|.+||+.+++......+...+..+.|+| ++++|+.++.++   .|.+||+.++..
T Consensus       280 ~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       280 DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCCCCe
Confidence            3456789998 6655443 33  58888888777655544667788899999 999999888776   899999988765


Q ss_pred             EEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          464 VDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       464 ~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ..+... .......|+|||+.|+.++.+
T Consensus       359 ~~l~~~-~~~~~p~~spdg~~l~~~~~~  385 (417)
T TIGR02800       359 RVLTDT-GLDESPSFAPNGRMILYATTR  385 (417)
T ss_pred             EEccCC-CCCCCceECCCCCEEEEEEeC
Confidence            544332 234556899999998877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.22  E-value=1.2e-10  Score=115.35  Aligned_cols=193  Identities=16%  Similarity=0.238  Sum_probs=125.5

Q ss_pred             cccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecC
Q 011126          282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS  361 (493)
Q Consensus       282 ~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  361 (493)
                      .|...|.++.|+.+...+.+++.+-.+.-|++.+ .....+..+........+       +.......++. .-.++..+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~-~s~~~~~~p~df~pt~~h-------~~~rs~~~g~~-~d~~~i~s   82 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSR-DSVEVAKLPDDFVPTDMH-------LGGRSSGGGKG-SDTLLICS   82 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccc-hhhhhhhCCcccCCcccc-------ccccccCCCCC-cceEEEEc
Confidence            4677788999998877776665554444455533 323333332221111111       01111111111 11222334


Q ss_pred             CCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC----------------------
Q 011126          362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI----------------------  418 (493)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~----------------------  418 (493)
                      .|+...+....     .+.-.....|.+.|.+-.|+|+| -|+|++.||.|++|.-..                      
T Consensus        83 ~DGkf~il~k~-----~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S  157 (737)
T KOG1524|consen   83 NDGRFVILNKS-----ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNS  157 (737)
T ss_pred             CCceEEEeccc-----chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCC
Confidence            45554444321     12234567899999999999999 999999999999997321                      


Q ss_pred             C-------------------cEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEc
Q 011126          419 D-------------------RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC  479 (493)
Q Consensus       419 ~-------------------~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~s  479 (493)
                      .                   +.++--.|.+-|.++.|+| ..+++++|+.|-+.+|||-....+.....|..+|++++|+
T Consensus       158 ~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~n  236 (737)
T KOG1524|consen  158 NSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFN  236 (737)
T ss_pred             CceEEecCCeEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeec
Confidence            0                   0111123999999999999 8999999999999999999888788888999999999999


Q ss_pred             cCCCEEEEeec
Q 011126          480 PDGKVRQNSAC  490 (493)
Q Consensus       480 pdG~~l~s~s~  490 (493)
                      || +.++.++.
T Consensus       237 pd-~~~~v~S~  246 (737)
T KOG1524|consen  237 PE-KDYLLWSY  246 (737)
T ss_pred             cc-cceeeeee
Confidence            99 66666553

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=5e-10  Score=115.95  Aligned_cols=160  Identities=18%  Similarity=0.146  Sum_probs=110.0

Q ss_pred             CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---CcEEEEecCCCeeeeeeeccCCCCceE
Q 011126          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCL  332 (493)
Q Consensus       256 dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~V~iWdl~~~~~~~~~~~~~~~~~~~  332 (493)
                      +..|.|||......        +.+..|...|...+|+|||++|+.++.+   ..|++||+.+++...            
T Consensus       183 ~~~i~i~d~dg~~~--------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------------  242 (429)
T PRK01742        183 PYEVRVADYDGFNQ--------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------------  242 (429)
T ss_pred             eEEEEEECCCCCCc--------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------------
Confidence            57899999865431        2456788899999999999999887754   369999987654211            


Q ss_pred             EEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEE-eCCCe
Q 011126          333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SADKT  410 (493)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sg-s~Dg~  410 (493)
                                                                      +..+.+|.   ..++|+|+| .|+.+ ..++.
T Consensus       243 ------------------------------------------------l~~~~g~~---~~~~wSPDG~~La~~~~~~g~  271 (429)
T PRK01742        243 ------------------------------------------------VASFRGHN---GAPAFSPDGSRLAFASSKDGV  271 (429)
T ss_pred             ------------------------------------------------EecCCCcc---CceeECCCCCEEEEEEecCCc
Confidence                                                            11122232   357999999 66655 46787


Q ss_pred             EEEE--ECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeCC--CCeEEEecCCCCCeEEEEEccCCCEE
Q 011126          411 VRLW--QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKVR  485 (493)
Q Consensus       411 V~lW--d~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~--~~~~~~~~~~~~~I~sv~~spdG~~l  485 (493)
                      +.||  |+.++.......+...+....|+| +++.|+..+ .+|..+||++.  ++..... .+..  ..+.|+|||++|
T Consensus       272 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~i  347 (429)
T PRK01742        272 LNIYVMGANGGTPSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTL  347 (429)
T ss_pred             EEEEEEECCCCCeEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEE
Confidence            6555  666666555445667788999999 898777655 57888888764  3333222 3332  457899999999


Q ss_pred             EEeec
Q 011126          486 QNSAC  490 (493)
Q Consensus       486 ~s~s~  490 (493)
                      +..+.
T Consensus       348 a~~~~  352 (429)
T PRK01742        348 VMING  352 (429)
T ss_pred             EEEcC
Confidence            87754

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.19  E-value=4.7e-11  Score=116.41  Aligned_cols=215  Identities=16%  Similarity=0.160  Sum_probs=139.7

Q ss_pred             cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe--
Q 011126          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE--  317 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~--  317 (493)
                      .+.++.+|.+|+.|+.-|.|..+|+.+....+.       +. -...|.++.|-.+.+++|.+ ....+.|||-..-+  
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E-------i~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElH  204 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE-------IN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELH  204 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeeee-------ee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEe
Confidence            367889999999999999999999886553221       11 23457777777777777665 34567777743222  


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (493)
                      +++....    +..+.|.+.+                +.....+..+.+...+...    .+.+..+....+.+..++-+
T Consensus       205 Clk~~~~----v~rLeFLPyH----------------fLL~~~~~~G~L~Y~DVS~----GklVa~~~t~~G~~~vm~qN  260 (545)
T KOG1272|consen  205 CLKRHIR----VARLEFLPYH----------------FLLVAASEAGFLKYQDVST----GKLVASIRTGAGRTDVMKQN  260 (545)
T ss_pred             ehhhcCc----hhhhcccchh----------------heeeecccCCceEEEeech----hhhhHHHHccCCccchhhcC
Confidence            2222110    0011111111                0001111111111111111    12233444456778888889


Q ss_pred             CCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEE
Q 011126          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA  475 (493)
Q Consensus       398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~s  475 (493)
                      |-+ .+-+|...|+|.+|......++..+ .|.++|.+|++.| +|+|+||.+.|..|+|||+++...+.....+-+...
T Consensus       261 P~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~  339 (545)
T KOG1272|consen  261 PYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASN  339 (545)
T ss_pred             CccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeecCCCccc
Confidence            988 9999999999999999988776555 5999999999999 999999999999999999998765433333667788


Q ss_pred             EEEccCCCEEEEe
Q 011126          476 VCYCPDGKVRQNS  488 (493)
Q Consensus       476 v~~spdG~~l~s~  488 (493)
                      +++|.-|.+.++-
T Consensus       340 ls~SqkglLA~~~  352 (545)
T KOG1272|consen  340 LSLSQKGLLALSY  352 (545)
T ss_pred             cccccccceeeec
Confidence            8898888655443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=3.1e-09  Score=109.90  Aligned_cols=162  Identities=15%  Similarity=0.079  Sum_probs=112.1

Q ss_pred             CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC---CCcEEEEecCCCeeeeeeeccCCCCceEE
Q 011126          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCLY  333 (493)
Q Consensus       257 g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~  333 (493)
                      ..|.++|......        +.+..+...+...+|+|||+.|+..+.   +..|.+|++.+++...             
T Consensus       179 ~~l~~~d~dg~~~--------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-------------  237 (429)
T PRK03629        179 YELRVSDYDGYNQ--------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-------------  237 (429)
T ss_pred             eeEEEEcCCCCCC--------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-------------
Confidence            4688888764431        134456778999999999999886543   3468888886654211             


Q ss_pred             EeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE-EEeCCC--
Q 011126          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK--  409 (493)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~-sgs~Dg--  409 (493)
                                                                     +..+.+|   +..++|+|+| .|+ +.+.++  
T Consensus       238 -----------------------------------------------l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~  267 (429)
T PRK03629        238 -----------------------------------------------VASFPRH---NGAPAFSPDGSKLAFALSKTGSL  267 (429)
T ss_pred             -----------------------------------------------ccCCCCC---cCCeEECCCCCEEEEEEcCCCCc
Confidence                                                           1111222   3357899999 555 444454  


Q ss_pred             eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC-C--eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEE
Q 011126          410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQ  486 (493)
Q Consensus       410 ~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-g--~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~  486 (493)
                      .|.+||+.++.......+...+....|+| +++.|+..+.+ +  .|+++|+.+++...+..........+|+|||++|+
T Consensus       268 ~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        268 NLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             EEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence            58899999887766655666788999999 99988877754 3  46666787776665544445567789999999998


Q ss_pred             Eeec
Q 011126          487 NSAC  490 (493)
Q Consensus       487 s~s~  490 (493)
                      ..+.
T Consensus       347 ~~~~  350 (429)
T PRK03629        347 MVSS  350 (429)
T ss_pred             EEEc
Confidence            7654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.17  E-value=1.8e-09  Score=112.36  Aligned_cols=214  Identities=18%  Similarity=0.227  Sum_probs=140.0

Q ss_pred             CeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCeee--eeeeccCCCCceEE
Q 011126          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERL--DGFDVQDTDPSCLY  333 (493)
Q Consensus       257 g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~~--~~~~~~~~~~~~~~  333 (493)
                      +.+.||+++.......       ...-...|.+++|+| +..+||.|.++|.|.+||+..+...  ..+...        
T Consensus       222 ~~~~vW~~~~p~~Pe~-------~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~--------  286 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPEL-------VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL--------  286 (555)
T ss_pred             ceEEEEecCCCCCceE-------EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccc--------
Confidence            4799999986532211       223467899999999 6778899999999999999877652  211111        


Q ss_pred             EeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeeccc--ceEEEe------cCCCCEeEEEEeCCC--eEE
Q 011126          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK--PLHEFQ------GHSSEVLDLSWSKNG--FLL  403 (493)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~------~h~~~V~~l~~sp~g--~l~  403 (493)
                       ...+...+..+-+...... ..++..+.|+.+..|..+.......  +.....      .....+++++|.+..  .++
T Consensus       287 -~~sh~~~v~~vvW~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi  364 (555)
T KOG1587|consen  287 -EVSHSEPVTAVVWLQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI  364 (555)
T ss_pred             -cccCCcCeEEEEEeccCCC-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE
Confidence             1111112222222222222 4456677799999997765544211  111111      224478999999977  899


Q ss_pred             EEeCCCeEEEE---ECCCCc-----EEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC-CCeEE-EecCCCCC
Q 011126          404 SSSADKTVRLW---QVGIDR-----CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVV-DYTDIREI  472 (493)
Q Consensus       404 sgs~Dg~V~lW---d~~~~~-----~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~-~~~~~-~~~~~~~~  472 (493)
                      .|+.+|.|.-=   +.+...     .+..+ .|.++|+++.++|....+|++++ |.+|+||... ...++ .+..+...
T Consensus       365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~  443 (555)
T KOG1587|consen  365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDY  443 (555)
T ss_pred             EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccce
Confidence            99999998872   222222     11122 38999999999997777777777 9999999987 55554 56677777


Q ss_pred             eEEEEEccCCCEEEEe
Q 011126          473 VSAVCYCPDGKVRQNS  488 (493)
Q Consensus       473 I~sv~~spdG~~l~s~  488 (493)
                      |++++|||-..-+...
T Consensus       444 v~~vaWSptrpavF~~  459 (555)
T KOG1587|consen  444 VTDVAWSPTRPAVFAT  459 (555)
T ss_pred             eeeeEEcCcCceEEEE
Confidence            9999999987654433

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.17  E-value=4.8e-10  Score=105.73  Aligned_cols=224  Identities=20%  Similarity=0.368  Sum_probs=143.3

Q ss_pred             eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeeccc------------CCEEEEEEccCCC--EE
Q 011126          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YL  299 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~L  299 (493)
                      ..+.+.++.|...|.+||+|..+|+|.++........  ......+++.|.            ..|+.|.|.++++  .+
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            4467778999999999999999999999987654431  111222445554            4689999998654  56


Q ss_pred             EEEECCCcEEEEecCCCeeee-eeeccCCCCceEEEeeCCCCceeeeeccCccccceee-eecCCCceEEEcCCCceeec
Q 011126          300 ASGGEDGTVRVWKVIEHERLD-GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS-LRKSSDLTCVVLPPKVFRLL  377 (493)
Q Consensus       300 asgs~Dg~V~iWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~  377 (493)
                      +..+.|.+|++|.+....... .+..+...         .          ...+..... ..+..+..+.          
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~---------~----------~~~~~~lr~p~~~~~~~~ve----------  152 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEG---------P----------PGTITSLRLPVEGRHDLEVE----------  152 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccC---------C----------CCccceeeceeeccccceee----------
Confidence            667789999999986544322 11111000         0          000000000 0011111111          


Q ss_pred             ccceEEE-ecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCC-CcEEEEec--------CCCcEEEEEEccCCCCEEEEE
Q 011126          378 EKPLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI-DRCLRVFS--------HNNYVTSVAFNPVDDNYFISG  447 (493)
Q Consensus       378 ~~~~~~~-~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~-~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sg  447 (493)
                      ..|.+.+ .+|.-.|.+|+++.++..+....|=.|.||++.- .++.....        .+.-|++..|+|...++|+-.
T Consensus       153 a~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS  232 (433)
T KOG1354|consen  153 ASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS  232 (433)
T ss_pred             eeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe
Confidence            1222222 3588899999999999444455688999999873 33322221        234689999999889999999


Q ss_pred             eCCCeEEEEeCCCCeEE-------E----------ecCCCCCeEEEEEccCCCEEEEe
Q 011126          448 SIDGKVRIWEVRRCQVV-------D----------YTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       448 s~Dg~V~IWdl~~~~~~-------~----------~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      +..|+|++-|++...+.       .          +...-..|..+.|+++|+|+++-
T Consensus       233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR  290 (433)
T KOG1354|consen  233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR  290 (433)
T ss_pred             cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe
Confidence            99999999999954322       1          11223458899999999999864

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.14  E-value=4.5e-10  Score=119.32  Aligned_cols=150  Identities=23%  Similarity=0.401  Sum_probs=125.1

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  320 (493)
                      +-++++.-++++|+.-+.|.+|+........       .+.+|.+.|..+.|+.||+++++.+.|.++|+|++.+.+...
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~  211 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPI-------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG  211 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcc-------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC
Confidence            4567888899999999999999987333222       478999999999999999999999999999999998765321


Q ss_pred             eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC
Q 011126          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG  400 (493)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  400 (493)
                                                                                   ...-+|+..|..+.|.|+ 
T Consensus       212 -------------------------------------------------------------~~~fgHsaRvw~~~~~~n-  229 (967)
T KOG0974|consen  212 -------------------------------------------------------------CTGFGHSARVWACCFLPN-  229 (967)
T ss_pred             -------------------------------------------------------------cccccccceeEEEEeccc-
Confidence                                                                         123579999999999999 


Q ss_pred             eEEEEeCCCeEEEEECCCCcEEEEec-C-CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126          401 FLLSSSADKTVRLWQVGIDRCLRVFS-H-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~-h-~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~  461 (493)
                      .++|++.|-+.++|+....+.. .+. | ...|..++..+ +.-.++|++.||.+++|++...
T Consensus       230 ~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  230 RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhcc
Confidence            9999999999999976654443 443 4 46799999999 8889999999999999998753

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.14  E-value=1.1e-08  Score=95.89  Aligned_cols=213  Identities=17%  Similarity=0.262  Sum_probs=127.8

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccC--CEEEEEEccCCCEEEE-EECC------CcEEEE
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG--SILTMKFSLDGQYLAS-GGED------GTVRVW  311 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~--~I~~l~fspdg~~Las-gs~D------g~V~iW  311 (493)
                      ++|+.|...+++|..+| .+||+.+.-.....       -+-+.+  .+..|-|  .-++||- ||.+      ..|.||
T Consensus        11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~-------r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW   80 (346)
T KOG2111|consen   11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESAS-------RQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW   80 (346)
T ss_pred             EEEccCCceEEEEecCc-eEEEecCchhhhhh-------hccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence            88999999999998877 89999886332221       111222  2333333  2345543 4333      469999


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee--c--ccceEEEecC
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL--L--EKPLHEFQGH  387 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~--~--~~~~~~~~~h  387 (493)
                      |=....++.++.... ++..+.+..                          +..+++...+++-.  .  -+.++.+..-
T Consensus        81 DD~k~~~i~el~f~~-~I~~V~l~r--------------------------~riVvvl~~~I~VytF~~n~k~l~~~et~  133 (346)
T KOG2111|consen   81 DDLKERCIIELSFNS-EIKAVKLRR--------------------------DRIVVVLENKIYVYTFPDNPKLLHVIETR  133 (346)
T ss_pred             ecccCcEEEEEEecc-ceeeEEEcC--------------------------CeEEEEecCeEEEEEcCCChhheeeeecc
Confidence            955555555544322 122222211                          11111111111110  0  1122222221


Q ss_pred             --CCCEeEEEEeCCC-eEE-EEeCCCeEEEEECCCCcE---EEEecCCCcEEEEEEccCCCCEEEEEeCCCe-EEEEeCC
Q 011126          388 --SSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVR  459 (493)
Q Consensus       388 --~~~V~~l~~sp~g-~l~-sgs~Dg~V~lWd~~~~~~---~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~-V~IWdl~  459 (493)
                        ...+.+++-..+. +|+ -|-.-|.|+|-|+...+.   .....|.+.|.|++.+- +|.++||+|..|+ |||||..
T Consensus       134 ~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~  212 (346)
T KOG2111|consen  134 SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTE  212 (346)
T ss_pred             cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcC
Confidence              1223333222222 443 344669999999986655   55556999999999999 9999999999997 7999999


Q ss_pred             CCeEEE-e--cCCCCCeEEEEEccCCCEEEEeecC
Q 011126          460 RCQVVD-Y--TDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       460 ~~~~~~-~--~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ++..+. +  ......|.+++|+||..+|++++.-
T Consensus       213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK  247 (346)
T KOG2111|consen  213 DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK  247 (346)
T ss_pred             CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence            998774 3  2345679999999999999988754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=3.1e-09  Score=110.18  Aligned_cols=161  Identities=20%  Similarity=0.156  Sum_probs=111.9

Q ss_pred             CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---CcEEEEecCCCeeeeeeeccCCCCceEE
Q 011126          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY  333 (493)
Q Consensus       257 g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~V~iWdl~~~~~~~~~~~~~~~~~~~~  333 (493)
                      ..|.+||.....        .+.+..|...+...+|+|||++|+..+.+   ..|++||+.+++...             
T Consensus       184 ~~l~i~D~~g~~--------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-------------  242 (433)
T PRK04922        184 YALQVADSDGYN--------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-------------  242 (433)
T ss_pred             EEEEEECCCCCC--------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-------------
Confidence            468888875332        12355677889999999999999887743   368899986654211             


Q ss_pred             EeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE-EEEeCCC--
Q 011126          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADK--  409 (493)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l-~sgs~Dg--  409 (493)
                                                                        +..+.+....++|+|+| .| ++.+.++  
T Consensus       243 --------------------------------------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~  272 (433)
T PRK04922        243 --------------------------------------------------VASFRGINGAPSFSPDGRRLALTLSRDGNP  272 (433)
T ss_pred             --------------------------------------------------eccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence                                                              01112223467899999 44 4556555  


Q ss_pred             eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC-CCe--EEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEE
Q 011126          410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGK--VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQ  486 (493)
Q Consensus       410 ~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg~--V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~  486 (493)
                      .|.+||+.++.......+......++|+| ++++|+..+. +|.  |+++|+.+++...+.........++|+|||++|+
T Consensus       273 ~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia  351 (433)
T PRK04922        273 EIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA  351 (433)
T ss_pred             eEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence            59999999887665545655667899999 9998887764 444  7777887777655443334455789999999998


Q ss_pred             Eee
Q 011126          487 NSA  489 (493)
Q Consensus       487 s~s  489 (493)
                      ..+
T Consensus       352 ~~~  354 (433)
T PRK04922        352 MVH  354 (433)
T ss_pred             EEE
Confidence            764

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.13  E-value=1.9e-09  Score=101.21  Aligned_cols=180  Identities=18%  Similarity=0.267  Sum_probs=126.2

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCCcEEEEecCCCeee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIEHERL  319 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~V~iWdl~~~~~~  319 (493)
                      .+|+|+|+++|+.+.. ++.|.|..+-+       ..|.+. .-+.|.-|.|..|.-+++.+ ..|+.|.+|++...+-.
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq-------~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQ-------LHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY   84 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhh-------HHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence            6799999999999877 88888876432       111111 24568889999988776654 67889999998655421


Q ss_pred             eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (493)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (493)
                                                                                    ..+.....++..++|+|+
T Consensus        85 --------------------------------------------------------------ckIdeg~agls~~~WSPd  102 (447)
T KOG4497|consen   85 --------------------------------------------------------------CKIDEGQAGLSSISWSPD  102 (447)
T ss_pred             --------------------------------------------------------------EEeccCCCcceeeeECCC
Confidence                                                                          222334667889999999


Q ss_pred             C--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC--------------------------
Q 011126          400 G--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG--------------------------  451 (493)
Q Consensus       400 g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg--------------------------  451 (493)
                      |  +|.+...|-.|.||.+.+..+...-.....+..++|+| ++++.+..+.-.                          
T Consensus       103 grhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dl  181 (447)
T KOG4497|consen  103 GRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDL  181 (447)
T ss_pred             cceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccc
Confidence            9  77888899999999999988876655555678899999 898887766421                          


Q ss_pred             ----------eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          452 ----------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       452 ----------~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                                .+.|||---.-.+......-.+..++|+|.+++|++|+.|.
T Consensus       182 tgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~  232 (447)
T KOG4497|consen  182 TGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQ  232 (447)
T ss_pred             cCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccch
Confidence                      12233321111111111224688899999999999999873

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=2.3e-09  Score=107.25  Aligned_cols=200  Identities=20%  Similarity=0.238  Sum_probs=127.3

Q ss_pred             cccCCEEEEEEccCCCEE-EEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeec--------cCccc
Q 011126          282 AHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDV--------DKEKI  352 (493)
Q Consensus       282 ~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~  352 (493)
                      .|....+.|..+|||+|| |+|-+--.|++||+..-.....-......+. +....+..+.++.+..        ..+..
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~-feiLsDD~SK~v~L~~DR~IefHak~G~h  127 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVD-FEILSDDYSKSVFLQNDRTIEFHAKYGRH  127 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccccccee-EEEeccchhhheEeecCceeeehhhcCee
Confidence            477888999999999976 6677888999999976654333222222221 1111111111111110        01111


Q ss_pred             cceeeee---------cCCCceEEEcCCCceeec---ccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC
Q 011126          353 DKTKSLR---------KSSDLTCVVLPPKVFRLL---EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID  419 (493)
Q Consensus       353 ~~~~~~~---------~s~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~  419 (493)
                      ..+....         .+.+..+.-....++++.   +..+..+....+.++++..++-. +|++|+.+|.|-.||.++.
T Consensus       128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence            1111111         111112222222233322   12344555567889999999976 9999999999999999988


Q ss_pred             cEEEEec-------CCC-----cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCC--CCeEEEEEccCCC
Q 011126          420 RCLRVFS-------HNN-----YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR--EIVSAVCYCPDGK  483 (493)
Q Consensus       420 ~~~~~~~-------h~~-----~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~--~~I~sv~~spdG~  483 (493)
                      ..+.++.       |..     .|+++.|+. +|-.+++|+.+|.|.|||+++.+++....|.  -+|..+.|.+.+.
T Consensus       208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~  284 (703)
T KOG2321|consen  208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ  284 (703)
T ss_pred             hhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence            7777664       222     399999998 8999999999999999999999888766664  4789999977643

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=3.9e-09  Score=100.31  Aligned_cols=188  Identities=16%  Similarity=0.259  Sum_probs=126.0

Q ss_pred             cccccceeccCC-CeEEeeecCCeEEEEECCCcccccc-----ccccceee--ecccCCEEEEEEccCCCEEEEEEC-CC
Q 011126          236 DRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELS-----SLYTGQEF--LAHEGSILTMKFSLDGQYLASGGE-DG  306 (493)
Q Consensus       236 ~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~-----~~~~~~~l--~~H~~~I~~l~fspdg~~Lasgs~-Dg  306 (493)
                      ..+.+++|.|.+ +-|++|+..| |.||........-.     .....+.+  .+| ..|+.|+|++||..|++++. |.
T Consensus       141 rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss  218 (445)
T KOG2139|consen  141 RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS  218 (445)
T ss_pred             cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence            456678999865 4677777655 89998754322111     11112222  345 68999999999999999885 57


Q ss_pred             cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (493)
                      .|+|||..++..+...                                                              ..
T Consensus       219 si~iWdpdtg~~~pL~--------------------------------------------------------------~~  236 (445)
T KOG2139|consen  219 SIMIWDPDTGQKIPLI--------------------------------------------------------------PK  236 (445)
T ss_pred             eEEEEcCCCCCccccc--------------------------------------------------------------cc
Confidence            8999999887643211                                                              11


Q ss_pred             CCCCEeEEEEeCCC-eEEEEeCCCeEEEEEC-CCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC--CC-
Q 011126          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR--RC-  461 (493)
Q Consensus       387 h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~-~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~--~~-  461 (493)
                      ..+.+.-+.|||+| +|+++.-|+..+||+. ++..+.+..-..+.|+..+|+| +|++|+-... |.-++|.+.  .. 
T Consensus       237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~  314 (445)
T KOG2139|consen  237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGED  314 (445)
T ss_pred             CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCC
Confidence            24567889999999 9999999999999954 4445555444666999999999 8876654432 223344432  10 


Q ss_pred             ------------eEE-Ee---------cCCCCCeEEEEEccCCCEEEEee
Q 011126          462 ------------QVV-DY---------TDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       462 ------------~~~-~~---------~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                                  .++ .+         .-..+.+.+++|.|.|.+|++.-
T Consensus       315 ~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  315 SVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             ccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence                        011 11         11245789999999999999763

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=4.8e-10  Score=110.09  Aligned_cols=257  Identities=19%  Similarity=0.260  Sum_probs=162.0

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECC
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGED  305 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~D  305 (493)
                      ..++..|...++.+.|...|..|++|+.|.+|.+||+......+.      -..+|...|...+|-|  +.+-|++++.|
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~------f~SGH~~NvfQaKFiP~s~d~ti~~~s~d  208 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS------FESGHCNNVFQAKFIPFSGDRTIVTSSRD  208 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc------cccccccchhhhhccCCCCCcCceecccc
Confidence            345667888888899999999999999999999999987665443      1357888888888888  34578888888


Q ss_pred             CcEEEEecCCCeee---eeeeccCCCCceEEEeeCCCCceeeeeccCc----------------------c---------
Q 011126          306 GTVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKE----------------------K---------  351 (493)
Q Consensus       306 g~V~iWdl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~---------  351 (493)
                      |.|++=.+.....+   ..+..+...+..++.-+.....++....+..                      +         
T Consensus       209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA  288 (559)
T ss_pred             CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence            88888766433221   2222333333333333332222221111100                      0         


Q ss_pred             ---ccceeeeecCCCceEEEcCCCceeecc--cceEEEe------cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC-
Q 011126          352 ---IDKTKSLRKSSDLTCVVLPPKVFRLLE--KPLHEFQ------GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-  418 (493)
Q Consensus       352 ---~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~------~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~-  418 (493)
                         .....+..+..+....+++.+.+....  .++..+.      ...-.|++++|+.++ -|+++..|-.|+++.-.. 
T Consensus       289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~  368 (559)
T KOG1334|consen  289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG  368 (559)
T ss_pred             cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence               000111223333334444443322211  1122222      223479999999887 778888889999995432 


Q ss_pred             -C----------cEEEE-ec-CC--CcEEEEEE-ccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccC
Q 011126          419 -D----------RCLRV-FS-HN--NYVTSVAF-NPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPD  481 (493)
Q Consensus       419 -~----------~~~~~-~~-h~--~~V~~v~f-sp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spd  481 (493)
                       +          ..++. ++ |.  ..|.++.| -| ...|+++|+.-|.|.||+-.+++++. +.+....|++|.=+|-
T Consensus       369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~  447 (559)
T KOG1334|consen  369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH  447 (559)
T ss_pred             cCCCCCCCcchhhccchhhcccccccccceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC
Confidence             2          11222 32 43  35777776 46 78999999999999999999999885 4455558999999999


Q ss_pred             CCEEEEeecC
Q 011126          482 GKVRQNSACN  491 (493)
Q Consensus       482 G~~l~s~s~d  491 (493)
                      -.+|+++|=|
T Consensus       448 ~PvLAsSGid  457 (559)
T KOG1334|consen  448 LPVLASSGID  457 (559)
T ss_pred             CchhhccCCc
Confidence            8899888754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=9.7e-09  Score=106.50  Aligned_cols=184  Identities=20%  Similarity=0.203  Sum_probs=116.6

Q ss_pred             eecccccceeccCCCeEEeeecC---CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCC--c
Q 011126          234 IIDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG--T  307 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg--~  307 (493)
                      +...+....|+|+|+.|+..+..   ..|.+|++.......        +....+.+....|+|||++|+ +...+|  .
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~  268 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE  268 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------ccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence            33445568999999999876533   368888987543221        122233455789999999886 444555  4


Q ss_pred             EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (493)
                      |++||+.+++..                                                               .+..+
T Consensus       269 Iy~~d~~~~~~~---------------------------------------------------------------~lt~~  285 (430)
T PRK00178        269 IYVMDLASRQLS---------------------------------------------------------------RVTNH  285 (430)
T ss_pred             EEEEECCCCCeE---------------------------------------------------------------EcccC
Confidence            666677654321                                                               11112


Q ss_pred             CCCEeEEEEeCCC-eEEEEe-CCC--eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC-C--eEEEEeCCC
Q 011126          388 SSEVLDLSWSKNG-FLLSSS-ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRR  460 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs-~Dg--~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-g--~V~IWdl~~  460 (493)
                      ........|+|+| .|+..+ .++  .|.++++.+++...............|+| ++++|+..+.+ +  .|.+||+.+
T Consensus       286 ~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~t  364 (430)
T PRK00178        286 PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQR  364 (430)
T ss_pred             CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCceEEEEEECCC
Confidence            2334456899998 554443 333  57777887776544332333445678999 99988877653 3  588999998


Q ss_pred             CeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          461 CQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       461 ~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ++...+... .......|+|||+.++.++.
T Consensus       365 g~~~~lt~~-~~~~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        365 GSVRILTDT-SLDESPSVAPNGTMLIYATR  393 (430)
T ss_pred             CCEEEccCC-CCCCCceECCCCCEEEEEEe
Confidence            876554332 22235689999999987654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.11  E-value=9.4e-09  Score=106.10  Aligned_cols=164  Identities=18%  Similarity=0.151  Sum_probs=114.6

Q ss_pred             CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---CcEEEEecCCCeeeeeeeccCCCCceE
Q 011126          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCL  332 (493)
Q Consensus       256 dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~V~iWdl~~~~~~~~~~~~~~~~~~~  332 (493)
                      ...|.++|.....        .+.+..+...+...+|+|||++|+.+..+   ..|++||+.+++...            
T Consensus       169 ~~~l~~~d~~g~~--------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~------------  228 (417)
T TIGR02800       169 RYELQVADYDGAN--------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK------------  228 (417)
T ss_pred             cceEEEEcCCCCC--------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE------------
Confidence            3457777764322        12355577789999999999999887654   478999987654211            


Q ss_pred             EEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE-EEEeCCC-
Q 011126          333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADK-  409 (493)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l-~sgs~Dg-  409 (493)
                                                                         +..+...+..++|+|+| .| ++.+.++ 
T Consensus       229 ---------------------------------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~  257 (417)
T TIGR02800       229 ---------------------------------------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGN  257 (417)
T ss_pred             ---------------------------------------------------eecCCCCccceEECCCCCEEEEEECCCCC
Confidence                                                               11123345568899998 44 4555444 


Q ss_pred             -eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC-C--eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEE
Q 011126          410 -TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVR  485 (493)
Q Consensus       410 -~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-g--~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l  485 (493)
                       .|.+||+.++.......+........|+| +++.|+..+.. +  .|++||+.+++...+..+...+..+.|+|||+++
T Consensus       258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i  336 (417)
T TIGR02800       258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLI  336 (417)
T ss_pred             ccEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEE
Confidence             58899998877655555555566789999 99988776643 3  6888999888776665556677889999999999


Q ss_pred             EEeecC
Q 011126          486 QNSACN  491 (493)
Q Consensus       486 ~s~s~d  491 (493)
                      +.++.+
T Consensus       337 ~~~~~~  342 (417)
T TIGR02800       337 AFVHRE  342 (417)
T ss_pred             EEEEcc
Confidence            887654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.10  E-value=5.1e-09  Score=111.49  Aligned_cols=188  Identities=17%  Similarity=0.238  Sum_probs=141.9

Q ss_pred             CEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCce
Q 011126          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT  365 (493)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  365 (493)
                      .|....+.-+..+++.+..+..+.+||...+.....+........            .....-...........++.-+.
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l------------~~~~~~g~s~~~~~i~~gsv~~~  156 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTL------------YSSLIIGDSAEELYIASGSVFGE  156 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEE------------EeEEEEeccCcEEEEEecccccc
Confidence            344455555677888888889999999987776555544322111            11111122233445556777778


Q ss_pred             EEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEE--EecCCCcEEEEEEccCCCC
Q 011126          366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDDN  442 (493)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~--~~~h~~~V~~v~fsp~d~~  442 (493)
                      +++|...   ...+|. .+.||.+.|..+.|+.+| ++++.|+|.++|+|++.+.+.+.  .|.|+..|+.++|.| +  
T Consensus       157 iivW~~~---~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--  229 (967)
T KOG0974|consen  157 IIVWKPH---EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--  229 (967)
T ss_pred             EEEEecc---ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--
Confidence            8888776   223334 689999999999999999 99999999999999999988765  567999999999998 4  


Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEEecCCC-CCeEEEEEccCCCEEEEeecCC
Q 011126          443 YFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       443 ~l~sgs~Dg~V~IWdl~~~~~~~~~~~~-~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +++|++.|-+.++|+....++..+..|. ..|+.+...++...+++++.|.
T Consensus       230 ~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds  280 (967)
T KOG0974|consen  230 RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS  280 (967)
T ss_pred             eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCc
Confidence            9999999999999988776666666664 4699999999999999988764

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.07  E-value=1.3e-08  Score=102.60  Aligned_cols=102  Identities=20%  Similarity=0.290  Sum_probs=90.8

Q ss_pred             ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      .+|.+.|.++.|+.+- .|.+++.|+.+..|+......++.+. ....+.+++.+| |+..+++++  +.|++||+.+++
T Consensus        99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~ke  175 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKE  175 (541)
T ss_pred             CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCce
Confidence            3589999999998875 99999999999999999999999887 667789999999 899999875  569999999999


Q ss_pred             EE-EecCCCCCeEEEEEccC-----CCEEEEee
Q 011126          463 VV-DYTDIREIVSAVCYCPD-----GKVRQNSA  489 (493)
Q Consensus       463 ~~-~~~~~~~~I~sv~~spd-----G~~l~s~s  489 (493)
                      ++ .+.+|.++|.+++|.-+     |++++++.
T Consensus       176 vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa  208 (541)
T KOG4547|consen  176 VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSA  208 (541)
T ss_pred             EEEEecCCCcceEEEEEEEeccccccceeeecc
Confidence            88 68999999999999988     88887664

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.07  E-value=1.8e-08  Score=94.80  Aligned_cols=103  Identities=10%  Similarity=0.180  Sum_probs=83.4

Q ss_pred             CCCEeEEEEeCCC-eEEEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          388 SSEVLDLSWSKNG-FLLSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs--~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      ...+.-++|+++. +++|-.  .-+.+-|||++..+....+-...+|....|+| ....|+.+.....+++|......++
T Consensus       318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP-~~prL~vctg~srLY~W~psg~~~V  396 (447)
T KOG4497|consen  318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVV  396 (447)
T ss_pred             ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCC-CCceEEEEcCCceEEEEcCCCceEE
Confidence            3456789999999 666553  23679999999888877777888999999999 5555666666778999999988888


Q ss_pred             EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          465 DYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       465 ~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ......-.|..++|..+|..++..+.|
T Consensus       397 ~vP~~GF~i~~l~W~~~g~~i~l~~kD  423 (447)
T KOG4497|consen  397 GVPKKGFNIQKLQWLQPGEFIVLCGKD  423 (447)
T ss_pred             ecCCCCceeeeEEecCCCcEEEEEcCC
Confidence            777777889999999999998877765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=2.1e-08  Score=104.26  Aligned_cols=184  Identities=18%  Similarity=0.206  Sum_probs=113.2

Q ss_pred             eecccccceeccCCCeEEeeecC-C--eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE-EECCCc--
Q 011126          234 IIDRHGSATLKPGDHELTLGQRM-R--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGT--  307 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~d-g--~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~--  307 (493)
                      ....+....|+|||+.|+..+.. +  .|.+|++.......        +....+......|+|||+.|+. ...+|.  
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~  287 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------VTSFPGINGAPRFSPDGKKLALVLSKDGQPE  287 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------ecCCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence            33455568999999999876542 3  58888876543211        1111223346899999997764 556665  


Q ss_pred             EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (493)
                      |.+||+.+++.                                                               ..+..+
T Consensus       288 Iy~~dl~tg~~---------------------------------------------------------------~~lt~~  304 (448)
T PRK04792        288 IYVVDIATKAL---------------------------------------------------------------TRITRH  304 (448)
T ss_pred             EEEEECCCCCe---------------------------------------------------------------EECccC
Confidence            55556544431                                                               111122


Q ss_pred             CCCEeEEEEeCCC-eEE-EEeCCC--eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC-C--eEEEEeCCC
Q 011126          388 SSEVLDLSWSKNG-FLL-SSSADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRR  460 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~-sgs~Dg--~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-g--~V~IWdl~~  460 (493)
                      .......+|+|+| .|+ +...++  .|.++|+.+++...............|+| ++++|+..+.+ +  .|.++|+.+
T Consensus       305 ~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~  383 (448)
T PRK04792        305 RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLET  383 (448)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCC
Confidence            3344567899998 554 443344  46666787776544332333445679999 89888776553 3  566788888


Q ss_pred             CeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          461 CQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       461 ~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ++...+.... ......|+|||+.|+.++.
T Consensus       384 g~~~~lt~~~-~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        384 GAMQVLTSTR-LDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             CCeEEccCCC-CCCCceECCCCCEEEEEEe
Confidence            8765443322 2234589999999887654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=1.5e-08  Score=104.83  Aligned_cols=162  Identities=19%  Similarity=0.191  Sum_probs=104.2

Q ss_pred             CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---CcEEEEecCCCeeeeeeeccCCCCceEE
Q 011126          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY  333 (493)
Q Consensus       257 g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~V~iWdl~~~~~~~~~~~~~~~~~~~~  333 (493)
                      ..|.++|.....        .+.+..+...+...+|+|||+.|+..+.+   ..|.+||+.+++...             
T Consensus       176 ~~L~~~D~dG~~--------~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-------------  234 (427)
T PRK02889        176 YQLQISDADGQN--------AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-------------  234 (427)
T ss_pred             cEEEEECCCCCC--------ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-------------
Confidence            457777764322        12345677889999999999999887643   359999987664311             


Q ss_pred             EeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE-EEEeCCCeE
Q 011126          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKTV  411 (493)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l-~sgs~Dg~V  411 (493)
                                                                        +....+.+...+|+|+| .| ++.+.++..
T Consensus       235 --------------------------------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~  264 (427)
T PRK02889        235 --------------------------------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNS  264 (427)
T ss_pred             --------------------------------------------------eecCCCCccceEECCCCCEEEEEEccCCCc
Confidence                                                              01112334578999999 55 467778876


Q ss_pred             EEEE--CCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC-CCeEEEE--eCCCCeEEEecCCCCCeEEEEEccCCCEEE
Q 011126          412 RLWQ--VGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIW--EVRRCQVVDYTDIREIVSAVCYCPDGKVRQ  486 (493)
Q Consensus       412 ~lWd--~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~IW--dl~~~~~~~~~~~~~~I~sv~~spdG~~l~  486 (493)
                      .||.  +..+.......+...++...|+| |++.|+..+. +|...||  ++.+++...............|+|||++|+
T Consensus       265 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        265 QIYTVNADGSGLRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA  343 (427)
T ss_pred             eEEEEECCCCCcEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence            6665  44444333333555667889999 9998876654 4555555  445555443332233345688999999998


Q ss_pred             Eeec
Q 011126          487 NSAC  490 (493)
Q Consensus       487 s~s~  490 (493)
                      ..+.
T Consensus       344 ~~s~  347 (427)
T PRK02889        344 YISR  347 (427)
T ss_pred             EEEc
Confidence            7654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.06  E-value=4e-08  Score=99.12  Aligned_cols=228  Identities=14%  Similarity=0.129  Sum_probs=119.8

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEEEEecCCC
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEH  316 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~iWdl~~~  316 (493)
                      +..+.|+|||+++.+.+.||.|.++|+...+.       ..++... .....+++++||++++++. ..+.|.|+|..+.
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-------v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl  110 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-------VATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL  110 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-------EEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccE-------EEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence            34478999999999999999999999986552       2234333 3467899999999998765 6899999999999


Q ss_pred             eeeeeeeccCCCC-----ceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          317 ERLDGFDVQDTDP-----SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       317 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      +.++.+.......     ....+...+....+.++...             .+.+.+.+....   ..............
T Consensus       111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-------------~~~I~vVdy~d~---~~~~~~~i~~g~~~  174 (369)
T PF02239_consen  111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-------------TGEIWVVDYSDP---KNLKVTTIKVGRFP  174 (369)
T ss_dssp             -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-------------TTEEEEEETTTS---SCEEEEEEE--TTE
T ss_pred             cceeecccccccccccCCCceeEEecCCCCEEEEEEcc-------------CCeEEEEEeccc---cccceeeecccccc
Confidence            9888876543221     11122112222211111111             011111110000   00011111223344


Q ss_pred             eEEEEeCCC-eE-EEEeCCCeEEEEECCCCc-------------------------------------------------
Q 011126          392 LDLSWSKNG-FL-LSSSADKTVRLWQVGIDR-------------------------------------------------  420 (493)
Q Consensus       392 ~~l~~sp~g-~l-~sgs~Dg~V~lWd~~~~~-------------------------------------------------  420 (493)
                      .+..|.|++ ++ ++....+.|-++|..+++                                                 
T Consensus       175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~  254 (369)
T PF02239_consen  175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH  254 (369)
T ss_dssp             EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred             cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence            556666666 33 333444555555555443                                                 


Q ss_pred             ------EEEEecCCCcEEEEEEccCCCCEEEEE----eCCCeEEEEeCCCCeEEEecC--CCCCeEEEEEccCCCEEEEe
Q 011126          421 ------CLRVFSHNNYVTSVAFNPVDDNYFISG----SIDGKVRIWEVRRCQVVDYTD--IREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       421 ------~~~~~~h~~~V~~v~fsp~d~~~l~sg----s~Dg~V~IWdl~~~~~~~~~~--~~~~I~sv~~spdG~~l~s~  488 (493)
                            .++.+...+.-.-+..+| +++++.+.    ...++|.|+|.++.+++....  ....+..+.|++||+.+.++
T Consensus       255 d~~~wkvv~~I~~~G~glFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS  333 (369)
T PF02239_consen  255 DDYAWKVVKTIPTQGGGLFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVS  333 (369)
T ss_dssp             TTTBTSEEEEEE-SSSS--EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEE
T ss_pred             hhhcCeEEEEEECCCCcceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEE
Confidence                  333333222224567788 88888887    445899999999998775322  22348999999999988776


Q ss_pred             ec
Q 011126          489 AC  490 (493)
Q Consensus       489 s~  490 (493)
                      ..
T Consensus       334 ~~  335 (369)
T PF02239_consen  334 VW  335 (369)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

...

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=2.9e-10  Score=112.88  Aligned_cols=180  Identities=16%  Similarity=0.249  Sum_probs=133.2

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (493)
                      +...++|...+..++--.+.+-+++++.|++|++|.++....+..+..+.-++++|+.+|..+.|-.+-++++++  ||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            445677888887766555667789999999999999988777666666667889999999999999998888876  889


Q ss_pred             EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (493)
                      |++||.--+..+..+....                                                         -.+.
T Consensus       806 iHlWDPFigr~Laq~~dap---------------------------------------------------------k~~a  828 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAP---------------------------------------------------------KEGA  828 (1034)
T ss_pred             ceeecccccchhHhhhcCc---------------------------------------------------------ccCC
Confidence            9999976554432211100                                                         0111


Q ss_pred             CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      .+.|.++.--... +++.++...+|+++|.+.......++      ....+.+++..| .|+.++.+-..|.|.+.|.++
T Consensus       829 ~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  829 GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARN  907 (1034)
T ss_pred             CceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCC
Confidence            2233333211111 45555889999999999887766654      346789999999 999999999999999999999


Q ss_pred             CeEEE-ec
Q 011126          461 CQVVD-YT  467 (493)
Q Consensus       461 ~~~~~-~~  467 (493)
                      |+++. |.
T Consensus       908 G~vINswr  915 (1034)
T KOG4190|consen  908 GKVINSWR  915 (1034)
T ss_pred             CceeccCC
Confidence            99874 44

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.02  E-value=1.4e-08  Score=94.13  Aligned_cols=213  Identities=15%  Similarity=0.204  Sum_probs=135.9

Q ss_pred             cCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc---CCC-EEEEEECCCcEEEEecCCCeeeeeeeccCCCCc
Q 011126          255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS  330 (493)
Q Consensus       255 ~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~-~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~  330 (493)
                      ..|.+.+|++......  .+...|  ..-+..+..|.|.-   +|. .|+-+-.+|.|.++..........+......  
T Consensus        44 R~Gkl~Lys~~d~~~~--~l~~~q--~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~--  117 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLS--PLDTLQ--CTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK--  117 (339)
T ss_pred             eccceEEEeecccccC--ccceee--eecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchh--
Confidence            4577888888755422  221211  12345688888864   555 5677778899999987654433333221110  


Q ss_pred             eEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCC
Q 011126          331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSAD  408 (493)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~D  408 (493)
                        .....   ..+.+++......   .+.....+.+.+.......+  +.++..+.|.-.+....|+...  ++.+|+.|
T Consensus       118 --ki~~~---~~lslD~~~~~~~---i~vs~s~G~~~~v~~t~~~l--e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD  187 (339)
T KOG0280|consen  118 --KISVV---EALSLDISTSGTK---IFVSDSRGSISGVYETEMVL--EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDD  187 (339)
T ss_pred             --hhhhe---eeeEEEeeccCce---EEEEcCCCcEEEEecceeee--eecccccccceeeeeeecccCCCceEEecCCC
Confidence              00000   0111122111111   22222233333222222221  3356778899999999998765  89999999


Q ss_pred             CeEEEEECC-CCcEEEEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC-CCeEEEecCCCCCeEEEEEccCCC
Q 011126          409 KTVRLWQVG-IDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVDYTDIREIVSAVCYCPDGK  483 (493)
Q Consensus       409 g~V~lWd~~-~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~-~~~~~~~~~~~~~I~sv~~spdG~  483 (493)
                      +.+..||++ .++++..-  .|...|.+|.-+|..+.+++||+.|-.|++||.+ -++++.-....+.|+.++++|.-.
T Consensus       188 ~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  188 GSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF  266 (339)
T ss_pred             ceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhh
Confidence            999999999 44444332  2899999999999789999999999999999999 578887777778999999999644

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.01  E-value=1.1e-09  Score=121.49  Aligned_cols=199  Identities=16%  Similarity=0.289  Sum_probs=141.4

Q ss_pred             eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (493)
Q Consensus       232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW  311 (493)
                      ..+.+.+.++.-||...+.++|+.||.|++|..........    ..  .+....|+.+.|+.+|+.+..+..||.+.+|
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~----~r--t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVC----FR--TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEE----ee--ccCcchhhhhhhcccCCceeeeccCCceeec
Confidence            33445566677799999999999999999999886553322    11  2233889999999999999999999999999


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      .+. .+.....+.+........|..   .            .....-..+.++.+.+|+.-.... ...++  ..|.+.+
T Consensus      2279 q~~-pk~~~s~qchnk~~~Df~Fi~---s------------~~~tag~s~d~~n~~lwDtl~~~~-~s~v~--~~H~~ga 2339 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIG---S------------LLATAGRSSDNRNVCLWDTLLPPM-NSLVH--TCHDGGA 2339 (2439)
T ss_pred             ccC-CcceeccccCCccccceeeee---h------------hhhccccCCCCCcccchhcccCcc-cceee--eecCCCc
Confidence            986 444444454444443333322   0            011111233444555665432211 11233  7899999


Q ss_pred             eEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126          392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       392 ~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                      +++++.|.. +|++|+.+|.|+|||++..+..++++.        ++  ...+|++|+..|.|+||++..-.++.
T Consensus      2340 T~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD--TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred             eEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh--hhheeeccCcccceEEEEccccchhh
Confidence            999999998 999999999999999998888777654        33  46799999999999999998876553

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=2.1e-07  Score=96.13  Aligned_cols=221  Identities=9%  Similarity=0.036  Sum_probs=125.9

Q ss_pred             ccccceeccCCCeEE---eeecCC--eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-----CC
Q 011126          237 RHGSATLKPGDHELT---LGQRMR--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-----DG  306 (493)
Q Consensus       237 ~~~~~~fsp~g~~la---sgs~dg--~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-----Dg  306 (493)
                      ...+-.|+|||+.++   +...+|  .|.+.++......        .+....+.....+|+|||++|+..+.     |.
T Consensus       186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~--------~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di  257 (428)
T PRK01029        186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK--------KILALQGNQLMPTFSPRKKLLAFISDRYGNPDL  257 (428)
T ss_pred             CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce--------EeecCCCCccceEECCCCCEEEEEECCCCCcce
Confidence            344578999997532   444444  4666676644321        22333445567899999998876553     22


Q ss_pred             cEEEEecCCCe--eeeeeecc-CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126          307 TVRVWKVIEHE--RLDGFDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (493)
Q Consensus       307 ~V~iWdl~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (493)
                      .+.+|++..+.  ....+... ........|++++...++.....             ....+.+++...   .......
T Consensus       258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~-------------g~~~ly~~~~~~---~g~~~~~  321 (428)
T PRK01029        258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKD-------------GRPRIYIMQIDP---EGQSPRL  321 (428)
T ss_pred             eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCC-------------CCceEEEEECcc---cccceEE
Confidence            34457766431  11222211 11222344544443222221111             111222221110   0111233


Q ss_pred             EecCCCCEeEEEEeCCC-eEEEEeCC---CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC---CCeEEEE
Q 011126          384 FQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIW  456 (493)
Q Consensus       384 ~~~h~~~V~~l~~sp~g-~l~sgs~D---g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~IW  456 (493)
                      +..+...+....|+|+| .|+..+.+   ..|.+||+.+++..........+....|+| ++++|+....   ...|++|
T Consensus       322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~v  400 (428)
T PRK01029        322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAI-DSLHLVYSAGNSNESELYLI  400 (428)
T ss_pred             eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECC-CCCEEEEEECCCCCceEEEE
Confidence            44445567789999999 66655433   469999999887755444444677899999 9988775443   3579999


Q ss_pred             eCCCCeEEEecCCCCCeEEEEEccCC
Q 011126          457 EVRRCQVVDYTDIREIVSAVCYCPDG  482 (493)
Q Consensus       457 dl~~~~~~~~~~~~~~I~sv~~spdG  482 (493)
                      |+.+++...+......+...+|+|-.
T Consensus       401 dl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        401 SLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             ECCCCCEEEeecCCCcccCceecCCC
Confidence            99988877666566667788898854

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=5.1e-09  Score=103.03  Aligned_cols=198  Identities=21%  Similarity=0.231  Sum_probs=134.7

Q ss_pred             eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeec-cCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (493)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (493)
                      ..|..|.+.|+.|.|+..|..|++|+.|..|.+||...+..+..+.. |...+....|.+......+.            
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~------------  203 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIV------------  203 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCce------------
Confidence            35678999999999999999999999999999999988877665543 22222223333332221111            


Q ss_pred             eeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec----CCC-
Q 011126          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNN-  429 (493)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~----h~~-  429 (493)
                        ..+.++.+.+-....... ......+..|.++|..++.-|+.  .|++++.|+.+.-.|+++..+-..+.    +.. 
T Consensus       204 --~~s~dgqvr~s~i~~t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~  280 (559)
T KOG1334|consen  204 --TSSRDGQVRVSEILETGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE  280 (559)
T ss_pred             --eccccCceeeeeeccccc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence              112222222111111000 01133456799999999999987  89999999999999999876654442    444 


Q ss_pred             --cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-------Ee------cCCCCCeEEEEEccCCCEEEEeec
Q 011126          430 --YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-------DY------TDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       430 --~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-------~~------~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                        ....|+.+|.+.++|++|+.|..++|||.+.-...       .+      ....-.|+++.|+.+|.-|+++-.
T Consensus       281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn  356 (559)
T KOG1334|consen  281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN  356 (559)
T ss_pred             ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence              67899999977779999999999999999853221       11      133446999999988776666544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.93  E-value=9.6e-09  Score=99.13  Aligned_cols=79  Identities=23%  Similarity=0.552  Sum_probs=70.4

Q ss_pred             EecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       384 ~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      +-||-.-+++++|+||+ +++++..|..|||-.......+..|  +|...|..++.-+  +..|++||.|++|++||+.+
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEeccc
Confidence            46899999999999999 9999999999999888877777666  4999999999986  56799999999999999999


Q ss_pred             CeEE
Q 011126          461 CQVV  464 (493)
Q Consensus       461 ~~~~  464 (493)
                      ++.+
T Consensus       225 gk~L  228 (390)
T KOG3914|consen  225 GKLL  228 (390)
T ss_pred             CCcc
Confidence            8765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=1.1e-07  Score=98.78  Aligned_cols=161  Identities=19%  Similarity=0.173  Sum_probs=105.8

Q ss_pred             eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CC--cEEEEecCCCeeeeeeeccCCCCceEEE
Q 011126          258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DG--TVRVWKVIEHERLDGFDVQDTDPSCLYF  334 (493)
Q Consensus       258 ~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg--~V~iWdl~~~~~~~~~~~~~~~~~~~~~  334 (493)
                      .|.++|......        +.+..+...+....|+|||++|+..+. ++  .|.+||+.+++...              
T Consensus       199 ~l~i~d~dG~~~--------~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------  256 (448)
T PRK04792        199 QLMIADYDGYNE--------QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------  256 (448)
T ss_pred             EEEEEeCCCCCc--------eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------
Confidence            566667654321        234456778999999999998887654 33  47777876554211              


Q ss_pred             eeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE-EEEeCCCe--
Q 011126          335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKT--  410 (493)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l-~sgs~Dg~--  410 (493)
                                                                    +..+.   +.....+|+|+| .| ++.+.++.  
T Consensus       257 ----------------------------------------------lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~  287 (448)
T PRK04792        257 ----------------------------------------------VTSFP---GINGAPRFSPDGKKLALVLSKDGQPE  287 (448)
T ss_pred             ----------------------------------------------ecCCC---CCcCCeeECCCCCEEEEEEeCCCCeE
Confidence                                                          00011   122357899999 44 45566665  


Q ss_pred             EEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC-CC--eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEE
Q 011126          411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQN  487 (493)
Q Consensus       411 V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s  487 (493)
                      |.+||+.+++......+........|+| ++++|+..+. ++  .|+++|+.+++...+..........+|+|||++|+.
T Consensus       288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~  366 (448)
T PRK04792        288 IYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIM  366 (448)
T ss_pred             EEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEE
Confidence            7778888877655545666678899999 8988776554 33  577778888876654333333456799999999887


Q ss_pred             eec
Q 011126          488 SAC  490 (493)
Q Consensus       488 ~s~  490 (493)
                      .+.
T Consensus       367 ~~~  369 (448)
T PRK04792        367 VNR  369 (448)
T ss_pred             EEe
Confidence            654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=1.4e-07  Score=97.83  Aligned_cols=161  Identities=16%  Similarity=0.103  Sum_probs=107.5

Q ss_pred             eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---CcEEEEecCCCeeeeeeeccCCCCceEEE
Q 011126          258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLYF  334 (493)
Q Consensus       258 ~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~V~iWdl~~~~~~~~~~~~~~~~~~~~~  334 (493)
                      .|.++|.....        .+.+..|...+....|+|||++|+..+.+   ..|.+|++.+++...              
T Consensus       180 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------  237 (430)
T PRK00178        180 TLQRSDYDGAR--------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------  237 (430)
T ss_pred             EEEEECCCCCC--------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------
Confidence            46677765432        12345677789999999999999876644   358888886654211              


Q ss_pred             eeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE-EEeCCC--e
Q 011126          335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK--T  410 (493)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~-sgs~Dg--~  410 (493)
                                                                       +....+.+...+|+|+| .|+ +...++  .
T Consensus       238 -------------------------------------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~  268 (430)
T PRK00178        238 -------------------------------------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE  268 (430)
T ss_pred             -------------------------------------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence                                                             00111223457899999 554 555555  5


Q ss_pred             EEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC-C--CeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEE
Q 011126          411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-D--GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQN  487 (493)
Q Consensus       411 V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-D--g~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s  487 (493)
                      |.+||+.++.......+........|+| +++.|+..+. +  ..|+++|+.+++...+...........|+|||++|+.
T Consensus       269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~  347 (430)
T PRK00178        269 IYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM  347 (430)
T ss_pred             EEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence            8888999887655444556677789999 8887776654 3  3688889888876544322333456789999999987


Q ss_pred             eec
Q 011126          488 SAC  490 (493)
Q Consensus       488 ~s~  490 (493)
                      .+.
T Consensus       348 ~~~  350 (430)
T PRK00178        348 VHR  350 (430)
T ss_pred             EEc
Confidence            654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=2.3e-07  Score=93.14  Aligned_cols=229  Identities=14%  Similarity=0.194  Sum_probs=137.9

Q ss_pred             cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC--EEEE-----EECCCcEEEEe
Q 011126          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLAS-----GGEDGTVRVWK  312 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Las-----gs~Dg~V~iWd  312 (493)
                      +..|+.|..+.|- -..+.|++|+........        -.-|...|..+.++|.+.  .+|+     .|.-+.||||.
T Consensus       130 ~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~--------~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~  200 (566)
T KOG2315|consen  130 VPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ--------HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYK  200 (566)
T ss_pred             ccccccchhhhhh-hhcceEEEEecCCcccee--------eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEec
Confidence            3677777764433 345679999987633221        234778899999999633  4443     35566899999


Q ss_pred             cCCCeeeeee---eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          313 VIEHERLDGF---DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       313 l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      +.....-..+   .........+.|...+...++....+-++...    ..-....++++....     .....-....+
T Consensus       201 ~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~----SYYGEq~Lyll~t~g-----~s~~V~L~k~G  271 (566)
T KOG2315|consen  201 YPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA----SYYGEQTLYLLATQG-----ESVSVPLLKEG  271 (566)
T ss_pred             cccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc----cccccceEEEEEecC-----ceEEEecCCCC
Confidence            8633221111   11111122233333333333332222211100    011122233322220     11111122478


Q ss_pred             CEeEEEEeCCC---eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC---CeEEEEeCCCCeE
Q 011126          390 EVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQV  463 (493)
Q Consensus       390 ~V~~l~~sp~g---~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWdl~~~~~  463 (493)
                      +|.++.|+|++   -++-|-+--++.|+|++.. ++..| ..++-+++-|+| .|++|+.++.+   |.|.|||+.+.+.
T Consensus       272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df-~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~  348 (566)
T KOG2315|consen  272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF-PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKL  348 (566)
T ss_pred             CceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC-CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhh
Confidence            99999999999   4456678899999998754 33333 456778999999 99999988875   8899999999887


Q ss_pred             EEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          464 VDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       464 ~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      +....... -+-+.|+|||++++++.+
T Consensus       349 i~~~~a~~-tt~~eW~PdGe~flTATT  374 (566)
T KOG2315|consen  349 IAKFKAAN-TTVFEWSPDGEYFLTATT  374 (566)
T ss_pred             ccccccCC-ceEEEEcCCCcEEEEEec
Confidence            75444333 345789999999999875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.88  E-value=1.6e-07  Score=96.45  Aligned_cols=251  Identities=14%  Similarity=0.150  Sum_probs=160.2

Q ss_pred             ccceeccCCCeEEeeecCCeEEEEECCCcccc--------ccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRE--------LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~--------~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      .+++|+....++|+|+.||.++|-.+.+....        .+.+.+.|++.||.+.|.-+.|+.+.+.|-|...+|.|.|
T Consensus        18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV   97 (1189)
T KOG2041|consen   18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV   97 (1189)
T ss_pred             EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence            45899999999999999999999988764432        3456677899999999999999999999999999999999


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeee----------eccCcccccee-----------------eeecCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI----------DVDKEKIDKTK-----------------SLRKSSD  363 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-----------------~~~~s~~  363 (493)
                      |-+-.+.-...+-..........++.+..+.-+++          ..+++.+....                 .+.+-..
T Consensus        98 WmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~an  177 (1189)
T KOG2041|consen   98 WMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKAN  177 (1189)
T ss_pred             EeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcC
Confidence            99877765444433333333333333322222222          22222211100                 0111122


Q ss_pred             ceEEEcCCC-ceeecc--cceEE----EecCCCCEeEEEEe--------CCC-eEEEEeCCCeEEEEECCCCcEEEEecC
Q 011126          364 LTCVVLPPK-VFRLLE--KPLHE----FQGHSSEVLDLSWS--------KNG-FLLSSSADKTVRLWQVGIDRCLRVFSH  427 (493)
Q Consensus       364 ~~~~~~~~~-~~~~~~--~~~~~----~~~h~~~V~~l~~s--------p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h  427 (493)
                      +.+.+++.. .|...-  .....    +......|-.+.|.        |+. .|+.+...|.+.|..-........+..
T Consensus       178 ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt  257 (1189)
T KOG2041|consen  178 GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT  257 (1189)
T ss_pred             CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec
Confidence            333333322 111110  11111    11122235667774        244 899999999999887666655566666


Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCC---------eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          428 NNYVTSVAFNPVDDNYFISGSIDG---------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       428 ~~~V~~v~fsp~d~~~l~sgs~Dg---------~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      .-.|..+.|+| +|.+|+.++.|.         +|.+|..-..-+-.+......|++++|-..|-.++.+..
T Consensus       258 gm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Avd  328 (1189)
T KOG2041|consen  258 GMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVD  328 (1189)
T ss_pred             ccEeecceecC-CCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEec
Confidence            68899999999 999999998753         566665543333345666678999999999888776643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.88  E-value=1.4e-06  Score=86.47  Aligned_cols=227  Identities=11%  Similarity=0.057  Sum_probs=130.5

Q ss_pred             eccCCCeEEeeec----------CCeEEEEECCCccccccccccce-eeecccCCEEEEEEccCCCEEEEEE-C-CCcEE
Q 011126          243 LKPGDHELTLGQR----------MRRVRVHPVKKQSRELSSLYTGQ-EFLAHEGSILTMKFSLDGQYLASGG-E-DGTVR  309 (493)
Q Consensus       243 fsp~g~~lasgs~----------dg~V~vwd~~~~~~~~~~~~~~~-~l~~H~~~I~~l~fspdg~~Lasgs-~-Dg~V~  309 (493)
                      ++|+++.|+++..          +..|.|||..+............ +++ ....-..++++|||++|+... . +..|.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL-VGTYPWMTSLTPDNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh-ccCccceEEECCCCCEEEEecCCCCCEEE
Confidence            8999998877654          78999999986553221100000 000 122344789999999998776 3 68999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      +.|+.+++.+..+..+.  ...++........+.+.+..      ........++....-....+.....++     ...
T Consensus       132 VvD~~~~kvv~ei~vp~--~~~vy~t~e~~~~~~~~Dg~------~~~v~~d~~g~~~~~~~~vf~~~~~~v-----~~r  198 (352)
T TIGR02658       132 VVDLEGKAFVRMMDVPD--CYHIFPTANDTFFMHCRDGS------LAKVGYGTKGNPKIKPTEVFHPEDEYL-----INH  198 (352)
T ss_pred             EEECCCCcEEEEEeCCC--CcEEEEecCCccEEEeecCc------eEEEEecCCCceEEeeeeeecCCcccc-----ccC
Confidence            99999999998888743  22222222222211111110      000011111111111111110000000     011


Q ss_pred             CEeEEEEeC-CC-eEEEEeCCCeEEEEECCC-----CcEEEEec--------CCCcEEEEEEccCCCCEEEEEe------
Q 011126          390 EVLDLSWSK-NG-FLLSSSADKTVRLWQVGI-----DRCLRVFS--------HNNYVTSVAFNPVDDNYFISGS------  448 (493)
Q Consensus       390 ~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~-----~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs------  448 (493)
                      +    .|.+ +| ++..... |+|.+-|+..     ......+.        ....+.-++++| +++.+....      
T Consensus       199 P----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~  272 (352)
T TIGR02658       199 P----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKW  272 (352)
T ss_pred             C----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccc
Confidence            2    3455 66 5555555 9999999643     33333332        223444599999 777666632      


Q ss_pred             ----CCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCC-EEEEee
Q 011126          449 ----IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-VRQNSA  489 (493)
Q Consensus       449 ----~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~-~l~s~s  489 (493)
                          ..+.|.++|+.+++++........+..|+++|||+ .|++..
T Consensus       273 thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn  318 (352)
T TIGR02658       273 THKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALS  318 (352)
T ss_pred             cccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeC
Confidence                12589999999999998777778999999999999 666554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.86  E-value=5.5e-07  Score=90.90  Aligned_cols=169  Identities=16%  Similarity=0.201  Sum_probs=113.0

Q ss_pred             EEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCC
Q 011126          250 LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP  329 (493)
Q Consensus       250 lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~  329 (493)
                      +++-..++.|.|.|..+.+.       ...+......-..+.|+|||+++++++.||.|.++|+.+.+.+.++..     
T Consensus         9 ~V~~~~~~~v~viD~~t~~~-------~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-----   76 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKV-------VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-----   76 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SE-------EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------
T ss_pred             EEEecCCCEEEEEECCCCeE-------EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----
Confidence            34566789999999875432       223443333334578999999999999999999999998886655432     


Q ss_pred             ceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE-EEeC
Q 011126          330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSA  407 (493)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~-sgs~  407 (493)
                                                                                .....+++++++| +++ +...
T Consensus        77 ----------------------------------------------------------G~~~~~i~~s~DG~~~~v~n~~   98 (369)
T PF02239_consen   77 ----------------------------------------------------------GGNPRGIAVSPDGKYVYVANYE   98 (369)
T ss_dssp             ----------------------------------------------------------SSEEEEEEE--TTTEEEEEEEE
T ss_pred             ----------------------------------------------------------CCCcceEEEcCCCCEEEEEecC
Confidence                                                                      2235689999999 555 5567


Q ss_pred             CCeEEEEECCCCcEEEEecC--------CCcEEEEEEccCCCCEEE-EEeCCCeEEEEeCCCCeEE--EecCCCCCeEEE
Q 011126          408 DKTVRLWQVGIDRCLRVFSH--------NNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVRRCQVV--DYTDIREIVSAV  476 (493)
Q Consensus       408 Dg~V~lWd~~~~~~~~~~~h--------~~~V~~v~fsp~d~~~l~-sgs~Dg~V~IWdl~~~~~~--~~~~~~~~I~sv  476 (493)
                      .+.|.++|.++.+.++.+..        ...+..|..+| ....++ +.-.-+.|.+-|..+.+.+  ............
T Consensus        99 ~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~  177 (369)
T PF02239_consen   99 PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG  177 (369)
T ss_dssp             TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred             CCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence            89999999999999988752        34678888888 566444 4444588988898765433  455566778899


Q ss_pred             EEccCCCEEEEee
Q 011126          477 CYCPDGKVRQNSA  489 (493)
Q Consensus       477 ~~spdG~~l~s~s  489 (493)
                      .|+|+|++++++.
T Consensus       178 ~~dpdgry~~va~  190 (369)
T PF02239_consen  178 GFDPDGRYFLVAA  190 (369)
T ss_dssp             EE-TTSSEEEEEE
T ss_pred             ccCcccceeeecc
Confidence            9999999988764

...

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=1.9e-07  Score=93.50  Aligned_cols=100  Identities=14%  Similarity=0.325  Sum_probs=71.4

Q ss_pred             CCCEeEEEEeCCC-eEEEEe---CCCeEEEEECCC-C---cEEEEecCCCcEEEEEEccCCCCEEEEEe---CCCeEEEE
Q 011126          388 SSEVLDLSWSKNG-FLLSSS---ADKTVRLWQVGI-D---RCLRVFSHNNYVTSVAFNPVDDNYFISGS---IDGKVRIW  456 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs---~Dg~V~lWd~~~-~---~~~~~~~h~~~V~~v~fsp~d~~~l~sgs---~Dg~V~IW  456 (493)
                      ...|...+|-|.| .+++-+   ...++.+|.+.+ .   ..+..+ .....+.+.|+| .|++++.+.   ..|.+.++
T Consensus       445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-dk~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~  522 (698)
T KOG2314|consen  445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-DKKFANTVFWSP-KGRFVVVAALVSRRGDLEFY  522 (698)
T ss_pred             chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-cccccceEEEcC-CCcEEEEEEecccccceEEE
Confidence            4567889999998 444332   246799998874 2   223333 235678999999 999988764   46889999


Q ss_pred             eCCC--CeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          457 EVRR--CQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       457 dl~~--~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      |+.-  .+.+....|. ..+.+.|.|.|+|++++++
T Consensus       523 D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  523 DTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             ecchhhhhhccCcccc-ccccceECCCCCEEEEeee
Confidence            9984  3444444454 5688999999999999875

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.85  E-value=1.7e-06  Score=87.04  Aligned_cols=237  Identities=13%  Similarity=0.205  Sum_probs=139.0

Q ss_pred             cccccceeccCCCeEEeeec----CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEE
Q 011126          236 DRHGSATLKPGDHELTLGQR----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRV  310 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~----dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~i  310 (493)
                      ....+++++|++++|.+...    .+.|..|.+......+..+   .........-..++++|++++|+++.+ +|.|.+
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~---~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v  113 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL---NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSV  113 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE---EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe---eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEE
Confidence            34456899999999988766    5799999887653223221   122223344567999999999988875 899999


Q ss_pred             EecCCC-eeeeeee---c----------cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126          311 WKVIEH-ERLDGFD---V----------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (493)
Q Consensus       311 Wdl~~~-~~~~~~~---~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  376 (493)
                      +++... .......   .          ....+.++.+.+++ ..++..+...+.+..+.            ++.....+
T Consensus       114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~------------~~~~~~~l  180 (345)
T PF10282_consen  114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYVYD------------IDDDTGKL  180 (345)
T ss_dssp             EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEEEE------------E-TTS-TE
T ss_pred             EEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCCCEEEEEE------------EeCCCceE
Confidence            999873 3322211   0          01112233333322 22333333322221111            11111011


Q ss_pred             cccceEEEe-cCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECC--CCcE--EEEec-------CCCcEEEEEEccCCCC
Q 011126          377 LEKPLHEFQ-GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVG--IDRC--LRVFS-------HNNYVTSVAFNPVDDN  442 (493)
Q Consensus       377 ~~~~~~~~~-~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~--~~~~--~~~~~-------h~~~V~~v~fsp~d~~  442 (493)
                      ..  ...+. ........++|+|++  .+++.-.+++|.++++.  .+..  +..+.       .......|+++| +++
T Consensus       181 ~~--~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~  257 (345)
T PF10282_consen  181 TP--VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGR  257 (345)
T ss_dssp             EE--EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSS
T ss_pred             EE--eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCC
Confidence            11  12222 344567899999998  55666788999999988  3322  22222       123688999999 999


Q ss_pred             EEEEEe-CCCeEEEEeCC--CCeEE--Ee-cCCCCCeEEEEEccCCCEEEEeecC
Q 011126          443 YFISGS-IDGKVRIWEVR--RCQVV--DY-TDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       443 ~l~sgs-~Dg~V~IWdl~--~~~~~--~~-~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +|.++. ..+.|.+|++.  ++++.  .. .........+.++|+|++|+++..+
T Consensus       258 ~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  258 FLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             EEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred             EEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence            877765 46789999994  34433  32 2234458999999999999998753

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.83  E-value=1.2e-07  Score=89.79  Aligned_cols=229  Identities=19%  Similarity=0.303  Sum_probs=146.8

Q ss_pred             CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (493)
Q Consensus       229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V  308 (493)
                      ..+.++.+.++....-|...-+++.+.|.+++||--.....--..     ....-..+++++.+.+....|+.|-..|++
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps-----I~~~mP~~~~~~~y~~e~~~L~vg~~ngtv   92 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS-----IYHYMPSPCSAMEYVSESRRLYVGQDNGTV   92 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch-----hhhhCCCCceEeeeeccceEEEEEEecceE
Confidence            357788899998888888888999999999999965433221111     112245789999999999999999999999


Q ss_pred             EEEecCC----CeeeeeeeccCCCCceEEEeeCCC--------Cceee-eeccCccccceeeeecCCC----ceEEEcCC
Q 011126          309 RVWKVIE----HERLDGFDVQDTDPSCLYFTINHL--------SQLIP-IDVDKEKIDKTKSLRKSSD----LTCVVLPP  371 (493)
Q Consensus       309 ~iWdl~~----~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~s~~----~~~~~~~~  371 (493)
                      .-+.+..    ...++.+..+...+..+.+.....        ..+.- ......+...+........    ..+.....
T Consensus        93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd  172 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGD  172 (404)
T ss_pred             EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecc
Confidence            9887632    222333333333333332222111        00000 0000111111111111000    00111111


Q ss_pred             C--------ceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc--EEEEecCCCcEEEEEEccCC
Q 011126          372 K--------VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFSHNNYVTSVAFNPVD  440 (493)
Q Consensus       372 ~--------~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~--~~~~~~h~~~V~~v~fsp~d  440 (493)
                      .        .....-.++.++.+|.+.+.+++|.|.. +|.+|..|..|.+||+...+  ....+.|.+.|..++.-+ .
T Consensus       173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~  251 (404)
T KOG1409|consen  173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-H  251 (404)
T ss_pred             cccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-h
Confidence            1        1111225678899999999999999987 99999999999999996543  444556999999999888 7


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeE
Q 011126          441 DNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       441 ~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      -..+++++.||.|.+|+++....
T Consensus       252 t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  252 TRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             heeeeeccCCCeEEEEeccceee
Confidence            88899999999999999986543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.83  E-value=1.2e-07  Score=102.74  Aligned_cols=195  Identities=16%  Similarity=0.265  Sum_probs=122.2

Q ss_pred             eeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCCCee-------eeeeeccCCCCceEEEeeCCCCceeeeeccCc
Q 011126          279 EFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHER-------LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKE  350 (493)
Q Consensus       279 ~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (493)
                      .+..|...|..++.++. +.+++||+.||+|++|+..+-..       ..++........++.+..++.           
T Consensus      1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~----------- 1111 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD----------- 1111 (1431)
T ss_pred             hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-----------
Confidence            35668889999998875 48999999999999999854221       112221222222333322221           


Q ss_pred             cccceeeeecCCCceEEEcCCCceeecc---cceEEEecC-CCCEe-EEEEeCC--C-eEEEEeCCCeEEEEECCCCcEE
Q 011126          351 KIDKTKSLRKSSDLTCVVLPPKVFRLLE---KPLHEFQGH-SSEVL-DLSWSKN--G-FLLSSSADKTVRLWQVGIDRCL  422 (493)
Q Consensus       351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~h-~~~V~-~l~~sp~--g-~l~sgs~Dg~V~lWd~~~~~~~  422 (493)
                           ....++.|+.+.+..........   ........+ .+.+. ..+|...  . .|+.+..-+.|..||+++...+
T Consensus      1112 -----~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~ 1186 (1431)
T KOG1240|consen 1112 -----QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA 1186 (1431)
T ss_pred             -----eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH
Confidence                 11223555555555444321110   111111111 12232 2333322  2 6777888899999999988776


Q ss_pred             EEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCCeEEEEEccCC---CEEEEeec
Q 011126          423 RVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDG---KVRQNSAC  490 (493)
Q Consensus       423 ~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~--~~~~~~~I~sv~~spdG---~~l~s~s~  490 (493)
                      ..++   ..+.|++++.+| .++++++|+..|.+-+||++=+.++.  ...+..+|+.++.+|--   ...++++.
T Consensus      1187 w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1187 WRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred             HhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence            6665   447899999999 89999999999999999999877773  34455788888887754   35555543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.82  E-value=5.3e-08  Score=90.47  Aligned_cols=155  Identities=17%  Similarity=0.234  Sum_probs=118.5

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCeee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERL  319 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~~  319 (493)
                      +.|++.+..++++-.+|.+.+-+...     ..+...|.+++|+-.++..+|+. +.+++.+||.|+.+..||++..+. 
T Consensus       127 lD~~~~~~~i~vs~s~G~~~~v~~t~-----~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-  200 (339)
T KOG0280|consen  127 LDISTSGTKIFVSDSRGSISGVYETE-----MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-  200 (339)
T ss_pred             EEeeccCceEEEEcCCCcEEEEecce-----eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-
Confidence            67899999999999999998544332     23445678899999999999987 456889999999999999862210 


Q ss_pred             eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (493)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (493)
                        +                                             +            .+..+-|...|.+|.-+|.
T Consensus       201 --~---------------------------------------------i------------~~n~kvH~~GV~SI~ss~~  221 (339)
T KOG0280|consen  201 --F---------------------------------------------I------------WHNSKVHTSGVVSIYSSPP  221 (339)
T ss_pred             --e---------------------------------------------e------------eecceeeecceEEEecCCC
Confidence              0                                             0            1112448889999988886


Q ss_pred             C--eEEEEeCCCeEEEEECC-CCcEEEEecCCCcEEEEEEccCCC-CEEEEEeCCCeEEEEeCCCC
Q 011126          400 G--FLLSSSADKTVRLWQVG-IDRCLRVFSHNNYVTSVAFNPVDD-NYFISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       400 g--~l~sgs~Dg~V~lWd~~-~~~~~~~~~h~~~V~~v~fsp~d~-~~l~sgs~Dg~V~IWdl~~~  461 (493)
                      .  +++||+.|..|++||.+ .++++..-...+.|+.+.++|... .+|+++-..| .+|-+...+
T Consensus       222 ~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~  286 (339)
T KOG0280|consen  222 KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDK  286 (339)
T ss_pred             CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence            5  99999999999999998 677877777889999999999543 3455555555 677777654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.82  E-value=8.8e-09  Score=100.80  Aligned_cols=181  Identities=15%  Similarity=0.209  Sum_probs=139.7

Q ss_pred             CEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCce
Q 011126          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT  365 (493)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  365 (493)
                      .-+.+.++.+|++|+.|+.-|.|-.+|..+++....+...+. +..+.|..+..                 ++.......
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Et-v~Dv~~LHneq-----------------~~AVAQK~y  192 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMET-VRDVTFLHNEQ-----------------FFAVAQKKY  192 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhh-hhhhhhhcchH-----------------HHHhhhhce
Confidence            346789999999999999999999999999998877765432 11222222111                 111122223


Q ss_pred             EEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCE
Q 011126          366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNY  443 (493)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~  443 (493)
                      +++++...     ..++.++.| ..|..|.|-|.. +|++++..|.++.-|+.+|+.+..+. -.+.+..++-+| -+..
T Consensus       193 ~yvYD~~G-----tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaV  265 (545)
T KOG1272|consen  193 VYVYDNNG-----TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAV  265 (545)
T ss_pred             EEEecCCC-----cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccce
Confidence            44444332     234545544 568899999998 88999999999999999999999887 567888899999 7888


Q ss_pred             EEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       444 l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +-+|...|+|.+|.....+.+ .+.-|.++|.+|++.++|+|++++|.|
T Consensus       266 ih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D  314 (545)
T KOG1272|consen  266 IHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD  314 (545)
T ss_pred             EEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccc
Confidence            999999999999999988766 688999999999999999999999876

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=8.4e-07  Score=85.55  Aligned_cols=236  Identities=15%  Similarity=0.174  Sum_probs=143.4

Q ss_pred             cccccceeccCCC--eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126          236 DRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       236 ~~~~~~~fsp~g~--~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl  313 (493)
                      +++..++|.-+++  .+...+.+..+..+........ +.+...........+|..++.. || .|++|-.+|.+.+|.+
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~-s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS-SSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccc-cccccccccccccccccchhhc-CC-EEEEEecCCcEEEEec
Confidence            4444555554443  3333435555555554432211 1111112234456677777764 34 6788899999999998


Q ss_pred             CCCee----eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCC--ceEEEcCCCce----eecccceEE
Q 011126          314 IEHER----LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD--LTCVVLPPKVF----RLLEKPLHE  383 (493)
Q Consensus       314 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~----~~~~~~~~~  383 (493)
                      ..+..    +..+...  +            .+..+  ............++..  ..+.+|+....    ....-|--.
T Consensus       133 k~~d~hss~l~~la~g--~------------g~~~~--r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~  196 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLATG--P------------GLYDV--RQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDR  196 (412)
T ss_pred             cCCccccccceeeecC--C------------ceeee--ccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence            74431    1111111  0            00000  0001111111222222  33344443221    110000000


Q ss_pred             Eec-CCCCEeEEEEeCC--C-eEEEEeCCCeEEEEECCCC-cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126          384 FQG-HSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (493)
Q Consensus       384 ~~~-h~~~V~~l~~sp~--g-~l~sgs~Dg~V~lWd~~~~-~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd  457 (493)
                      +.- -.-.++++.|-+.  . .|++++.-+.||+||.+.+ +++..|. -..+++++...| .++++++|..-|.+..+|
T Consensus       197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD  275 (412)
T KOG3881|consen  197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFD  275 (412)
T ss_pred             ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheec
Confidence            000 1224678888877  4 9999999999999999865 5677776 678999999999 999999999999999999


Q ss_pred             CCCCeEE--EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          458 VRRCQVV--DYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       458 l~~~~~~--~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ++++++.  .+.+..+.|++|..+|.+++++++|=|
T Consensus       276 ~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD  311 (412)
T KOG3881|consen  276 LRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD  311 (412)
T ss_pred             ccCceeeccccCCccCCcceEEEcCCCceEEeeccc
Confidence            9999987  378999999999999999999998865

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=2.5e-06  Score=88.17  Aligned_cols=212  Identities=13%  Similarity=0.061  Sum_probs=117.8

Q ss_pred             CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE---EEEECCC--cEEEEecCCCeeeeeeeccCCCCce
Q 011126          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL---ASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSC  331 (493)
Q Consensus       257 g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L---asgs~Dg--~V~iWdl~~~~~~~~~~~~~~~~~~  331 (493)
                      ..|.+.|......        +.+..+...+..-+|+|||+.+   ++...+|  .|.+.++.+++....... ......
T Consensus       165 ~~l~~~d~dG~~~--------~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~g~~~~  235 (428)
T PRK01029        165 GELWSVDYDGQNL--------RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-QGNQLM  235 (428)
T ss_pred             ceEEEEcCCCCCc--------eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-CCCccc
Confidence            3566666654321        1233345566778999999753   2444444  477778877754333222 222233


Q ss_pred             EEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEe-CCC
Q 011126          332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-ADK  409 (493)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs-~Dg  409 (493)
                      ..|++++...++......           ..+..+..++..... ..++.....++.......+|+|+| .|+..+ .++
T Consensus       236 p~wSPDG~~Laf~s~~~g-----------~~di~~~~~~~~~g~-~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g  303 (428)
T PRK01029        236 PTFSPRKKLLAFISDRYG-----------NPDLFIQSFSLETGA-IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG  303 (428)
T ss_pred             eEECCCCCEEEEEECCCC-----------CcceeEEEeecccCC-CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC
Confidence            455555543332221111           111111112211100 011122222223344678999999 555544 567


Q ss_pred             eEEEEE--CCC-CcEEEEec-CCCcEEEEEEccCCCCEEEEEeCC---CeEEEEeCCCCeEEEecCCCCCeEEEEEccCC
Q 011126          410 TVRLWQ--VGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDG  482 (493)
Q Consensus       410 ~V~lWd--~~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG  482 (493)
                      ...||.  +.. +.....+. +...+....|+| ++++|+..+.+   ..|++||+.+++...+......+....|+|||
T Consensus       304 ~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG  382 (428)
T PRK01029        304 RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDS  382 (428)
T ss_pred             CceEEEEECcccccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCC
Confidence            656664  432 22233333 445778899999 99988876543   47999999999887665555567889999999


Q ss_pred             CEEEEeec
Q 011126          483 KVRQNSAC  490 (493)
Q Consensus       483 ~~l~s~s~  490 (493)
                      +.|+..+.
T Consensus       383 ~~L~f~~~  390 (428)
T PRK01029        383 LHLVYSAG  390 (428)
T ss_pred             CEEEEEEC
Confidence            98876543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.73  E-value=2.7e-06  Score=79.37  Aligned_cols=211  Identities=14%  Similarity=0.181  Sum_probs=115.4

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  320 (493)
                      ++.+.+|++||.- .|..|.|...+..-....  ...+.-+.-.-.=+-++||||+.+||.+...|+|+++|+.... +.
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~--~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf   78 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSII--GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LF   78 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchhee--EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eE
Confidence            4667889888776 677888887664432221  1111112222345789999999999999999999999986543 33


Q ss_pred             eeeccCCC-------CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCC-ceeecccceEEEec-CCCCE
Q 011126          321 GFDVQDTD-------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK-VFRLLEKPLHEFQG-HSSEV  391 (493)
Q Consensus       321 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~-h~~~V  391 (493)
                      .+......       +..+.|......        ..-......+.............. .....+.....+.. +...|
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s--------~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi  150 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKS--------AQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI  150 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccc--------cccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence            33322111       111111111100        000011111111111111111110 00111111223333 46789


Q ss_pred             eEEEEeCCC-e-EEEEeCCC----------eEEEEECCCCcE---------------------E-----EEe----cCCC
Q 011126          392 LDLSWSKNG-F-LLSSSADK----------TVRLWQVGIDRC---------------------L-----RVF----SHNN  429 (493)
Q Consensus       392 ~~l~~sp~g-~-l~sgs~Dg----------~V~lWd~~~~~~---------------------~-----~~~----~h~~  429 (493)
                      .++.|+|.. + ++.|+...          -+.-|.+-.+.+                     .     +.+    ...+
T Consensus       151 ~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d  230 (282)
T PF15492_consen  151 NSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQD  230 (282)
T ss_pred             eEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCC
Confidence            999999986 4 44444332          256675432211                     0     111    1367


Q ss_pred             cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       430 ~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      .|..|..+| |+.+||+...+|+|.+|++..-++.
T Consensus       231 ~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  231 GIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             ceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhh
Confidence            899999999 9999999999999999999987665

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=1.6e-06  Score=87.20  Aligned_cols=218  Identities=17%  Similarity=0.269  Sum_probs=130.8

Q ss_pred             ecccccceeccCC--CeEEe-----eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC-EE--EEEEC
Q 011126          235 IDRHGSATLKPGD--HELTL-----GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YL--ASGGE  304 (493)
Q Consensus       235 ~~~~~~~~fsp~g--~~las-----gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~L--asgs~  304 (493)
                      ..+++...++|.+  ..+|+     ++.-..|+||.+....  .......++|.  ...=..+.|++-|+ +|  ++..-
T Consensus       165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~--~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdV  240 (566)
T KOG2315|consen  165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG--QHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDV  240 (566)
T ss_pred             ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc--ccchhhhcccc--ccceeEEEeccCCceEEEEEEEee
Confidence            3445557777773  34544     5677889999887211  11111112222  12234688998776 33  33333


Q ss_pred             CC---------cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee
Q 011126          305 DG---------TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR  375 (493)
Q Consensus       305 Dg---------~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  375 (493)
                      |.         ++++.++........+ ....++.++.|.+.+....++.+.-..+              +.+     ++
T Consensus       241 Dktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAk--------------vti-----fn  300 (566)
T KOG2315|consen  241 DKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAK--------------VTI-----FN  300 (566)
T ss_pred             cCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccce--------------EEE-----Ec
Confidence            43         5777777633322222 2245667777776664443333322222              222     22


Q ss_pred             ecccceEEEecCCCCEeEEEEeCCC-eEEEEeC---CCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC--
Q 011126          376 LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA---DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI--  449 (493)
Q Consensus       376 ~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~---Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~--  449 (493)
                      +..+++..+  ..++=+++-|+|.| +|+.++.   -|.|-|||+.+.+++..+...+. +-+.|+| ||++|+|++.  
T Consensus       301 lr~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t-t~~eW~P-dGe~flTATTaP  376 (566)
T KOG2315|consen  301 LRGKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT-TVFEWSP-DGEYFLTATTAP  376 (566)
T ss_pred             CCCCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc-eEEEEcC-CCcEEEEEeccc
Confidence            223444443  35667789999999 6666654   48899999999999888875544 3479999 9999999876  


Q ss_pred             ----CCeEEEEeCCCCeEEEecCCCCCeEEEEEccC
Q 011126          450 ----DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD  481 (493)
Q Consensus       450 ----Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spd  481 (493)
                          |+.++||++. |.++...........++|.|-
T Consensus       377 RlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  377 RLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRPF  411 (566)
T ss_pred             cEEecCCeEEEEec-CceeehhhhhHhHhheeeeec
Confidence                6889999985 444433333335677777764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.68  E-value=1.1e-05  Score=77.37  Aligned_cols=241  Identities=19%  Similarity=0.249  Sum_probs=151.7

Q ss_pred             ccccceecc-CCCeEEeeecCCe-EEEEECCCccccc-cccccceeeecccCCEEEEEEccCCCEEEEEEC-----CCcE
Q 011126          237 RHGSATLKP-GDHELTLGQRMRR-VRVHPVKKQSREL-SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-----DGTV  308 (493)
Q Consensus       237 ~~~~~~fsp-~g~~lasgs~dg~-V~vwd~~~~~~~~-~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-----Dg~V  308 (493)
                      +...++.+| ....++.+-+.|+ ..+||........ ........|.+|      -.|++||++|++.-.     .|.|
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~I   79 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVI   79 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEE
Confidence            334578889 5567777888876 5778887655331 122344567788      489999999998633     5789


Q ss_pred             EEEecC-CCeeeeeeeccCCCCceEEEeeCCCCceeeeec-cCcc-ccceeeeecCCCceEEEcCCCceeecccceEEE-
Q 011126          309 RVWKVI-EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDV-DKEK-IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-  384 (493)
Q Consensus       309 ~iWdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-  384 (493)
                      -|||.. +-+.+.++..+...+..+.+.+++...++...- .... ..+.+.--......+.+.+.....+.++  ..+ 
T Consensus        80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q--~~Lp  157 (305)
T PF07433_consen   80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ--VELP  157 (305)
T ss_pred             EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee--eecC
Confidence            999998 677888888888888888887777444433211 1110 0111222223333444444443333222  223 


Q ss_pred             -ecCCCCEeEEEEeCCCeEEEEeCC-C-------eEEEEECCCCcEEEEec--------CCCcEEEEEEccCCCCEEEEE
Q 011126          385 -QGHSSEVLDLSWSKNGFLLSSSAD-K-------TVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISG  447 (493)
Q Consensus       385 -~~h~~~V~~l~~sp~g~l~sgs~D-g-------~V~lWd~~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sg  447 (493)
                       .-|...|..|++.++|.++.+... +       -|-+++...  .+..+.        ..+||-+|++++ ++.++++.
T Consensus       158 ~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~t  234 (305)
T PF07433_consen  158 PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAVT  234 (305)
T ss_pred             ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeC-CCCEEEEE
Confidence             447788999999999955554321 1       244444332  233332        568999999999 88777554


Q ss_pred             -eCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          448 -SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       448 -s~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                       =.-+.+.+||..+++++......+ +..++-.+++ ++++++.
T Consensus       235 sPrGg~~~~~d~~tg~~~~~~~l~D-~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  235 SPRGGRVAVWDAATGRLLGSVPLPD-ACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             CCCCCEEEEEECCCCCEeeccccCc-eeeeeecCCc-eEEeCCC
Confidence             467899999999999987655443 4566666666 6665554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.67  E-value=2e-07  Score=87.13  Aligned_cols=231  Identities=19%  Similarity=0.275  Sum_probs=139.3

Q ss_pred             ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeeccc------------CCEEEEEEccCCC--EEE
Q 011126          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YLA  300 (493)
Q Consensus       235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~La  300 (493)
                      .+.+.++.|...|.||++|...|+|.++...+...-  ......++++|.            ..|..|.|..++.  .++
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~c--eykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGC--EYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeeccccccc--chhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            366778999999999999999999999987654411  111122456664            3588999977543  455


Q ss_pred             EEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCC-CceEEEcCCCceeeccc
Q 011126          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS-DLTCVVLPPKVFRLLEK  379 (493)
Q Consensus       301 sgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~  379 (493)
                      ..+.|.+|++|.+............   . .-.+.....+.+...       .......-+. +..+.          .+
T Consensus       104 lstNdktiKlWKiyeknlk~va~nn---l-s~~~~~~~~g~~~s~-------~~l~lprls~hd~iia----------a~  162 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENN---L-SDSFHSPMGGPLTST-------KELLLPRLSEHDEIIA----------AK  162 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccc---c-ccccccccCCCcCCH-------HHhhcccccccceEEE----------ec
Confidence            5678999999998655321111000   0 000000000000000       0000000000 11111          12


Q ss_pred             ceEEE-ecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCc-EEEEe--c-C-----CCcEEEEEEccCCCCEEEEEeC
Q 011126          380 PLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-CLRVF--S-H-----NNYVTSVAFNPVDDNYFISGSI  449 (493)
Q Consensus       380 ~~~~~-~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~-~~~~~--~-h-----~~~V~~v~fsp~d~~~l~sgs~  449 (493)
                      |.+.. ..|.-.|.+|.++.+...+..+.|=.|.+|++.-.. +....  + |     ..-|++..|+|...+.|.-.+.
T Consensus       163 p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS  242 (460)
T COG5170         163 PCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS  242 (460)
T ss_pred             cceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence            22222 468888999999998844445668889999986422 22221  1 2     3468999999988889999999


Q ss_pred             CCeEEEEeCCCCeEE-------E----------ecCCCCCeEEEEEccCCCEEEEe
Q 011126          450 DGKVRIWEVRRCQVV-------D----------YTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       450 Dg~V~IWdl~~~~~~-------~----------~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      .|.|++-|++...+.       .          +......|..+.|+|+|+++++-
T Consensus       243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR  298 (460)
T COG5170         243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR  298 (460)
T ss_pred             CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence            999999999843221       0          12234468899999999999864

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.66  E-value=4.9e-06  Score=85.56  Aligned_cols=177  Identities=9%  Similarity=0.063  Sum_probs=107.9

Q ss_pred             ccceeccCCCe-EEeeec---CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE-EECCC--cEEEE
Q 011126          239 GSATLKPGDHE-LTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDG--TVRVW  311 (493)
Q Consensus       239 ~~~~fsp~g~~-lasgs~---dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg--~V~iW  311 (493)
                      ....|+|+|+. ++..+.   ...|.++|+.+....        .+....+.+....|+|||+.|+. .+.++  .|.++
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~--------~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  262 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE--------KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY  262 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE--------EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence            35789999985 554333   356888887654422        12234455667889999987754 33333  45555


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      ++.+++..                                                               .+..+....
T Consensus       263 dl~~g~~~---------------------------------------------------------------~LT~~~~~d  279 (419)
T PRK04043        263 DTNTKTLT---------------------------------------------------------------QITNYPGID  279 (419)
T ss_pred             ECCCCcEE---------------------------------------------------------------EcccCCCcc
Confidence            55443211                                                               111111112


Q ss_pred             eEEEEeCCC-eE-EEEeCCC--eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC---------CeEEEEeC
Q 011126          392 LDLSWSKNG-FL-LSSSADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---------GKVRIWEV  458 (493)
Q Consensus       392 ~~l~~sp~g-~l-~sgs~Dg--~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---------g~V~IWdl  458 (493)
                      ....|+|+| .| ++....+  .|.++|+.++...+.......  ...|+| ++++|+..+..         ..|.+.|+
T Consensus       280 ~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~  356 (419)
T PRK04043        280 VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVST-YKNYIVYSSRETNNEFGKNTFNLYLIST  356 (419)
T ss_pred             CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECC-CCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence            234799999 44 3443333  577778887776444332222  248999 99988776654         36889999


Q ss_pred             CCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          459 RRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       459 ~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      .++....+.... ......|+|||+.++....
T Consensus       357 ~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        357 NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             CCCCeEECCCCC-CcCCeEECCCCCEEEEEEc
Confidence            988776655432 3346889999998876653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.60  E-value=9.2e-06  Score=80.28  Aligned_cols=170  Identities=11%  Similarity=0.167  Sum_probs=130.3

Q ss_pred             CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC-cEEEEecCCCeeeeeeec
Q 011126          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKVIEHERLDGFDV  324 (493)
Q Consensus       246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-~V~iWdl~~~~~~~~~~~  324 (493)
                      +|.+++.-++ |.+.|.+......         .-.+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++.      
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~---------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~------  394 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYS---------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV------  394 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCee---------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE------
Confidence            5667766655 4555554332210         1136888899999988888899999999 899999877652      


Q ss_pred             cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE
Q 011126          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL  403 (493)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~  403 (493)
                                                                               ..+...-+.|..+..+|+| +++
T Consensus       395 ---------------------------------------------------------kr~e~~lg~I~av~vs~dGK~~v  417 (668)
T COG4946         395 ---------------------------------------------------------KRIEKDLGNIEAVKVSPDGKKVV  417 (668)
T ss_pred             ---------------------------------------------------------EEeeCCccceEEEEEcCCCcEEE
Confidence                                                                     2334456789999999999 788


Q ss_pred             EEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCC----eEEEEeCCCCeEEEecCCCCCeEEEEE
Q 011126          404 SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQVVDYTDIREIVSAVCY  478 (493)
Q Consensus       404 sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg----~V~IWdl~~~~~~~~~~~~~~I~sv~~  478 (493)
                      .+.....|.+.|+.++.....-+ ..+-|+.+.|+| ++++||-+--+|    .|+++|+.++++...+.....=.+-+|
T Consensus       418 vaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaF  496 (668)
T COG4946         418 VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAF  496 (668)
T ss_pred             EEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCccc
Confidence            88888889999999987755443 567899999999 999999876665    699999999999987666666677899


Q ss_pred             ccCCCEEEEee
Q 011126          479 CPDGKVRQNSA  489 (493)
Q Consensus       479 spdG~~l~s~s  489 (493)
                      .|||++|.--+
T Consensus       497 D~d~ryLYfLs  507 (668)
T COG4946         497 DPDGRYLYFLS  507 (668)
T ss_pred             CCCCcEEEEEe
Confidence            99999987544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.58  E-value=1.2e-05  Score=80.13  Aligned_cols=227  Identities=16%  Similarity=0.240  Sum_probs=140.9

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC--CEEEE-----EECCCcEEEEec
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG--QYLAS-----GGEDGTVRVWKV  313 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg--~~Las-----gs~Dg~V~iWdl  313 (493)
                      +.|+-++.++|-- -...++|+++..+. ......   .+.  ...|....|+|.+  ..||.     .+.++.++||.+
T Consensus       137 ~k~s~~D~y~ARv-v~~sl~i~e~t~n~-~~~p~~---~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sI  209 (561)
T COG5354         137 LKFSIDDKYVARV-VGSSLYIHEITDNI-EEHPFK---NLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSI  209 (561)
T ss_pred             eeeeecchhhhhh-ccCeEEEEecCCcc-ccCchh---hcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEc
Confidence            6788888877665 44568999973322 211111   111  3568888999953  34544     467889999999


Q ss_pred             CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (493)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (493)
                      ..+..+.+-.........+.|...+...++.+.... +..+..  .  ....+.++.     +.+.-+.....-.++|.+
T Consensus       210 p~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~-ksnKsy--f--gesnLyl~~-----~~e~~i~V~~~~~~pVhd  279 (561)
T COG5354         210 PKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHT-KSNKSY--F--GESNLYLLR-----ITERSIPVEKDLKDPVHD  279 (561)
T ss_pred             cCCCeeeeeeeEeecccEEEEecCCceEEEEEEEee-ecccce--e--ccceEEEEe-----ecccccceecccccccee
Confidence            877766655554444445555555443333222211 110000  0  011222222     222223333355789999


Q ss_pred             EEEeCCC---eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC---CeEEEEeCCCCeEEE--
Q 011126          394 LSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVVD--  465 (493)
Q Consensus       394 l~~sp~g---~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWdl~~~~~~~--  465 (493)
                      .+|.|.+   -+++|-++-.+.++|++..  +........-+.+.|+| .+++++.++.|   |.|-|||..+.-.+.  
T Consensus       280 f~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~  356 (561)
T COG5354         280 FTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGA  356 (561)
T ss_pred             eeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccC-cccEEEEecCCccccceEEeccCCceEEEEE
Confidence            9999987   4556678999999999977  44444556667899999 99999998877   679999998775553  


Q ss_pred             ecCCCCCeEEEEEccCCCEEEEee
Q 011126          466 YTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       466 ~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      +.+..  .+-+.|+|||+++.+..
T Consensus       357 ~~~~n--~s~~~wspd~qF~~~~~  378 (561)
T COG5354         357 FNGLN--TSYCDWSPDGQFYDTDT  378 (561)
T ss_pred             eecCC--ceEeeccCCceEEEecC
Confidence            33332  34467999999887653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.58  E-value=1.6e-07  Score=61.88  Aligned_cols=36  Identities=47%  Similarity=0.860  Sum_probs=34.0

Q ss_pred             ceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd  312 (493)
                      .+++.+|.+.|++|+|+|++.+|++|+.|++|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            457899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.57  E-value=5.6e-05  Score=72.81  Aligned_cols=214  Identities=15%  Similarity=0.220  Sum_probs=131.8

Q ss_pred             CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---CcEEEEecCC--Ceeee--eeeccCCC
Q 011126          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIE--HERLD--GFDVQDTD  328 (493)
Q Consensus       256 dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~V~iWdl~~--~~~~~--~~~~~~~~  328 (493)
                      .+-|.+|++.+....+..+.    +..+.+.++-|+|+|++++|.++-.+   |.|-.|.+..  |....  .......+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~----~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~   90 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQ----LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSP   90 (346)
T ss_pred             CCceEEEEEeCcccccchhh----hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCC
Confidence            56799999987666655432    34677889999999999999888654   7788888765  43322  12222222


Q ss_pred             CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC----------EeEEEEeC
Q 011126          329 PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----------VLDLSWSK  398 (493)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------V~~l~~sp  398 (493)
                      +  ...+.+.....+......             .+.+.+++.+.......++ ....|.+.          +....+.|
T Consensus        91 p--~yvsvd~~g~~vf~AnY~-------------~g~v~v~p~~~dG~l~~~v-~~~~h~g~~p~~rQ~~~h~H~a~~tP  154 (346)
T COG2706          91 P--CYVSVDEDGRFVFVANYH-------------SGSVSVYPLQADGSLQPVV-QVVKHTGSGPHERQESPHVHSANFTP  154 (346)
T ss_pred             C--eEEEECCCCCEEEEEEcc-------------CceEEEEEcccCCccccce-eeeecCCCCCCccccCCccceeeeCC
Confidence            2  444444444333222211             1233333332211111111 12223333          77888999


Q ss_pred             CC-eEEEEe-CCCeEEEEECCCCcEEEE----ecCCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeCCC--CeEEEec--
Q 011126          399 NG-FLLSSS-ADKTVRLWQVGIDRCLRV----FSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRR--CQVVDYT--  467 (493)
Q Consensus       399 ~g-~l~sgs-~Dg~V~lWd~~~~~~~~~----~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~~--~~~~~~~--  467 (493)
                      ++ +|++.. .-..|.+|++..+.....    ++.......|.|+| ++++..... .+++|-+|....  +++-.+.  
T Consensus       155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i  233 (346)
T COG2706         155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI  233 (346)
T ss_pred             CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence            99 666654 335699999986654322    24667788999999 999877665 589999999987  3332211  


Q ss_pred             -------CCCCCeEEEEEccCCCEEEEeec
Q 011126          468 -------DIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       468 -------~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                             .......+|..+|||++|.++..
T Consensus       234 ~tlP~dF~g~~~~aaIhis~dGrFLYasNR  263 (346)
T COG2706         234 DTLPEDFTGTNWAAAIHISPDGRFLYASNR  263 (346)
T ss_pred             ccCccccCCCCceeEEEECCCCCEEEEecC
Confidence                   12345788999999999998753

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.53  E-value=4.3e-06  Score=79.52  Aligned_cols=226  Identities=20%  Similarity=0.319  Sum_probs=133.0

Q ss_pred             CeEEeeecCCeEEEEECCCcccccc--------------cc--------------cccee-eecccCCEEEEEEccCCCE
Q 011126          248 HELTLGQRMRRVRVHPVKKQSRELS--------------SL--------------YTGQE-FLAHEGSILTMKFSLDGQY  298 (493)
Q Consensus       248 ~~lasgs~dg~V~vwd~~~~~~~~~--------------~~--------------~~~~~-l~~H~~~I~~l~fspdg~~  298 (493)
                      ..++..+.|.+|++|.+........              .+              .+.+. -.+|+--|++|.++.|+..
T Consensus        99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen   99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET  178 (433)
T ss_pred             cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence            3566777999999998865432220              00              00011 1468888999999999998


Q ss_pred             EEEEECCCcEEEEecCCCeeeeee-eccCC-------CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcC
Q 011126          299 LASGGEDGTVRVWKVIEHERLDGF-DVQDT-------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP  370 (493)
Q Consensus       299 Lasgs~Dg~V~iWdl~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  370 (493)
                      ++++ .|=.|.+|++.--.....+ .....       .++...|.+.+               .......++.+.+.+.+
T Consensus       179 ~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~---------------cn~f~YSSSKGtIrLcD  242 (433)
T KOG1354|consen  179 FLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH---------------CNVFVYSSSKGTIRLCD  242 (433)
T ss_pred             Eeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH---------------ccEEEEecCCCcEEEee
Confidence            8886 4667999998543322111 11110       11111222211               12223344555566655


Q ss_pred             CCceee----------cccce--EEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECC-CCcEEEEec-C--------
Q 011126          371 PKVFRL----------LEKPL--HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG-IDRCLRVFS-H--------  427 (493)
Q Consensus       371 ~~~~~~----------~~~~~--~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~-~~~~~~~~~-h--------  427 (493)
                      .+.-.+          .+.|.  .-|.+--..|.++.|+++| ++++-. --+|+|||+. ..+++.++. |        
T Consensus       243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc  321 (433)
T KOG1354|consen  243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLC  321 (433)
T ss_pred             chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHH
Confidence            543222          11111  1122334578899999999 666643 3789999994 455555553 2        


Q ss_pred             ----CCc---EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec---------------------------------
Q 011126          428 ----NNY---VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT---------------------------------  467 (493)
Q Consensus       428 ----~~~---V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~---------------------------------  467 (493)
                          .+.   -.-++|+- ++.+++||+....++++++..+......                                 
T Consensus       322 ~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd  400 (433)
T KOG1354|consen  322 SLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVD  400 (433)
T ss_pred             HHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccc
Confidence                122   24578888 8899999999999999996654321100                                 


Q ss_pred             --CCCCCeEEEEEccCCCEEEEeecC
Q 011126          468 --DIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       468 --~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                        +....|...+|+|....+++++.+
T Consensus       401 ~ldf~kkilh~aWhp~en~ia~aatn  426 (433)
T KOG1354|consen  401 ALDFRKKILHTAWHPKENSIAVAATN  426 (433)
T ss_pred             hhhhhhHHHhhccCCccceeeeeecC
Confidence              011125567899999988888764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.53  E-value=3.9e-07  Score=88.19  Aligned_cols=126  Identities=21%  Similarity=0.327  Sum_probs=90.7

Q ss_pred             eeeecccccceeccCCCeEEeeec---CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126          232 ARIIDRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (493)
Q Consensus       232 ~~~~~~~~~~~fsp~g~~lasgs~---dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V  308 (493)
                      .+...+..++.|-.+......+-.   ...+.+|.....        +...+.||-.-++.++|+||+++|+++..|..|
T Consensus       104 ~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~--------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkI  175 (390)
T KOG3914|consen  104 SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG--------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKI  175 (390)
T ss_pred             eecccCcceeeeeeccceEEEEeecCCceeeeeeccccc--------CcchhhhhhhhhheeeecCCCCEEEEecCCceE
Confidence            333444445566555555555444   445555554431        223467899999999999999999999999999


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      ||-.....-.+.                                                             .-..||.
T Consensus       176 Rvs~ypa~f~Ie-------------------------------------------------------------sfclGH~  194 (390)
T KOG3914|consen  176 RVSRYPATFVIE-------------------------------------------------------------SFCLGHK  194 (390)
T ss_pred             EEEecCcccchh-------------------------------------------------------------hhccccH
Confidence            987653211100                                                             1135799


Q ss_pred             CCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec
Q 011126          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS  426 (493)
Q Consensus       389 ~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~  426 (493)
                      .-|..++.-++..|++++.|++|++||+.+++++.++.
T Consensus       195 eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  195 EFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             hheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence            99999999888789999999999999999999987774

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.50  E-value=1.5e-05  Score=79.62  Aligned_cols=240  Identities=13%  Similarity=0.157  Sum_probs=139.1

Q ss_pred             cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC-------------
Q 011126          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-------------  306 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-------------  306 (493)
                      .++++|.|.+|++....| |.+|......+ +..      +  -...|..+.|+|+++||.+-+.-.             
T Consensus        37 ~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~-l~~------~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~  106 (561)
T COG5354          37 YVSESPLGTYLFSEHAAG-VECWGGPSKAK-LVR------F--RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS  106 (561)
T ss_pred             heeecCcchheehhhccc-eEEccccchhh-eee------e--ecCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence            378999999999987655 88998664432 211      1  224689999999999999865543             


Q ss_pred             --cEEEEecCCCeeeeeeeccCCC--Cc-eEEEeeCCCC-------ceeeeec----cC--------ccccceeeeecCC
Q 011126          307 --TVRVWKVIEHERLDGFDVQDTD--PS-CLYFTINHLS-------QLIPIDV----DK--------EKIDKTKSLRKSS  362 (493)
Q Consensus       307 --~V~iWdl~~~~~~~~~~~~~~~--~~-~~~~~~~~~~-------~~~~~~~----~~--------~~~~~~~~~~~s~  362 (493)
                        .+.+||+.++..+..+......  .+ .+.|+.+...       .+.....    ..        ..+........+.
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n  186 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGN  186 (561)
T ss_pred             cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCC
Confidence              4999999999999888776555  33 3444443321       1111111    00        0011111111222


Q ss_pred             CceEEEcCCCceeecc----------cceEEEecCCCCEeEEEEeCCC-eEEE-E---e-------CCCeEEEEECCCCc
Q 011126          363 DLTCVVLPPKVFRLLE----------KPLHEFQGHSSEVLDLSWSKNG-FLLS-S---S-------ADKTVRLWQVGIDR  420 (493)
Q Consensus       363 ~~~~~~~~~~~~~~~~----------~~~~~~~~h~~~V~~l~~sp~g-~l~s-g---s-------~Dg~V~lWd~~~~~  420 (493)
                      ...+..|.+.......          +++.+-.--...=..+.|.+.| +|+. .   .       ....+.|+++....
T Consensus       187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~  266 (561)
T COG5354         187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS  266 (561)
T ss_pred             CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence            2234555443221110          1111111111222467888888 3321 1   1       12457788887443


Q ss_pred             EEEEecCCCcEEEEEEccCCCCEEEEE--eCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          421 CLRVFSHNNYVTSVAFNPVDDNYFISG--SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       421 ~~~~~~h~~~V~~v~fsp~d~~~l~sg--s~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +-......++|...+|.| .++-|++.  -.+..+.++|++..  +.+......-+.+.|+|.++++++++-++
T Consensus       267 i~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~n  337 (561)
T COG5354         267 IPVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDN  337 (561)
T ss_pred             cceeccccccceeeeecc-cCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCc
Confidence            333335689999999999 66655543  46889999999877  33333344456677888888888776543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.49  E-value=5.2e-05  Score=76.21  Aligned_cols=221  Identities=14%  Similarity=0.172  Sum_probs=121.2

Q ss_pred             EEeeecC----CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC----CCcEEEEecCCC--eee
Q 011126          250 LTLGQRM----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----DGTVRVWKVIEH--ERL  319 (493)
Q Consensus       250 lasgs~d----g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----Dg~V~iWdl~~~--~~~  319 (493)
                      +++|+..    +.|.+|++......+....   .+ .-......|+++|++++|++..+    ++.|..|++...  +..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~---~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~   77 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQ---TV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT   77 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEE---EE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEee---ee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE
Confidence            3444444    7899998854444443221   21 13345567899999999999877    578999998764  322


Q ss_pred             eeeeccCCCCceEEEeeCCCCce-eeeeccCccccceeeeecCCCceEEEcCCCc-eeecccceEEE----------ecC
Q 011126          320 DGFDVQDTDPSCLYFTINHLSQL-IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-FRLLEKPLHEF----------QGH  387 (493)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~----------~~h  387 (493)
                      ..-.........+.+........ +..+..              .+.+.+++... ..+. .....+          ...
T Consensus        78 ~~~~~~~~g~~p~~i~~~~~g~~l~vany~--------------~g~v~v~~l~~~g~l~-~~~~~~~~~g~g~~~~rq~  142 (345)
T PF10282_consen   78 LLNSVPSGGSSPCHIAVDPDGRFLYVANYG--------------GGSVSVFPLDDDGSLG-EVVQTVRHEGSGPNPDRQE  142 (345)
T ss_dssp             EEEEEEESSSCEEEEEECTTSSEEEEEETT--------------TTEEEEEEECTTSEEE-EEEEEEESEEEESSTTTTS
T ss_pred             EeeeeccCCCCcEEEEEecCCCEEEEEEcc--------------CCeEEEEEccCCcccc-eeeeecccCCCCCcccccc
Confidence            21111112222223333322222 222222              22222222211 0110 001111          012


Q ss_pred             CCCEeEEEEeCCC-eEEE-EeCCCeEEEEECCCCc--EEE----EecCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeC
Q 011126          388 SSEVLDLSWSKNG-FLLS-SSADKTVRLWQVGIDR--CLR----VFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEV  458 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~s-gs~Dg~V~lWd~~~~~--~~~----~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl  458 (493)
                      .....++.++|+| ++++ .-....|.+|++....  ...    .+........+.|+| +++++... -.+++|.++++
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~  221 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDY  221 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEE
T ss_pred             cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEee
Confidence            3467899999998 4444 4455689999997655  322    223667789999999 88877554 45789999999


Q ss_pred             C--CCeEE--E-ec----CC--CCCeEEEEEccCCCEEEEeec
Q 011126          459 R--RCQVV--D-YT----DI--REIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       459 ~--~~~~~--~-~~----~~--~~~I~sv~~spdG~~l~s~s~  490 (493)
                      .  ++.+.  . ..    ..  ......|.++|||++|+++..
T Consensus       222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr  264 (345)
T PF10282_consen  222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR  264 (345)
T ss_dssp             ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred             cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence            8  55432  1 11    11  226889999999999998764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.48  E-value=0.0004  Score=66.19  Aligned_cols=224  Identities=13%  Similarity=0.115  Sum_probs=133.3

Q ss_pred             ceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEc-cCCCEEEEEECCCcEEEEecCCCee
Q 011126          241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS-LDGQYLASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       241 ~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs-pdg~~Lasgs~Dg~V~iWdl~~~~~  318 (493)
                      ..|.+ ++.++++-...+.|..|+........        +.  ......+.+. +++ .|+.+...+ +.++|+.+++.
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------~~--~~~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~   72 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------ID--LPGPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKV   72 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------EE--SSSEEEEEEECTTS-EEEEEETTC-EEEEETTTTEE
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------Ee--cCCCceEEEEccCC-EEEEEEcCc-eEEEecCCCcE
Confidence            56787 77777887788999999987654322        11  1227778888 565 555555554 56669988866


Q ss_pred             eeeeecc--C-CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          319 LDGFDVQ--D-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       319 ~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      .......  . ......-........++.............      .+.++.++.. ..     +..+...-...+.|+
T Consensus        73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~------~g~v~~~~~~-~~-----~~~~~~~~~~pNGi~  140 (246)
T PF08450_consen   73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGID------PGSVYRIDPD-GK-----VTVVADGLGFPNGIA  140 (246)
T ss_dssp             EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGG------SEEEEEEETT-SE-----EEEEEEEESSEEEEE
T ss_pred             EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccccc------ccceEEECCC-Ce-----EEEEecCcccccceE
Confidence            5444442  1 222222333333344444333222111100      0333333333 11     222222345578999


Q ss_pred             EeCCC--eEEEEeCCCeEEEEECCCCcE----EEEe---cCC-CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126          396 WSKNG--FLLSSSADKTVRLWQVGIDRC----LRVF---SHN-NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       396 ~sp~g--~l~sgs~Dg~V~lWd~~~~~~----~~~~---~h~-~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                      |+|++  ++++-+..+.|..+++.....    ...+   ... ...-.+++.. ++++.++.-..+.|.+++.. ++++.
T Consensus       141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~  218 (246)
T PF08450_consen  141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLR  218 (246)
T ss_dssp             EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred             ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEE
Confidence            99999  455778889999999863221    1222   222 3588999999 99999988889999999998 76664


Q ss_pred             -ecCCCCCeEEEEE-ccCCCEEEEeec
Q 011126          466 -YTDIREIVSAVCY-CPDGKVRQNSAC  490 (493)
Q Consensus       466 -~~~~~~~I~sv~~-spdG~~l~s~s~  490 (493)
                       +.-....+++++| -|+.+.|.+.++
T Consensus       219 ~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  219 EIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             EEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence             3333368999999 477776665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.46  E-value=3e-05  Score=88.42  Aligned_cols=205  Identities=9%  Similarity=0.081  Sum_probs=123.6

Q ss_pred             cccceeccCCCeEEee-ecCCeEEEEECCCcccc-ccc-cccceeeecc-------cCCEEEEEEcc-CCCEEEEEECCC
Q 011126          238 HGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRE-LSS-LYTGQEFLAH-------EGSILTMKFSL-DGQYLASGGEDG  306 (493)
Q Consensus       238 ~~~~~fsp~g~~lasg-s~dg~V~vwd~~~~~~~-~~~-~~~~~~l~~H-------~~~I~~l~fsp-dg~~Lasgs~Dg  306 (493)
                      ...+++.+++..|+++ .....|++++..+.... +.. ......+.+.       -..-+.|+|+| ++.++++...++
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~  705 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH  705 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence            3458899988765554 45678999987654321 000 0000000000       11235799999 566667777889


Q ss_pred             cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (493)
                      .|++||..++... .+..            .+..  .                 ...+.               .. ...
T Consensus       706 ~I~v~d~~~g~v~-~~~G------------~G~~--~-----------------~~~g~---------------~~-~~~  737 (1057)
T PLN02919        706 QIWEYNISDGVTR-VFSG------------DGYE--R-----------------NLNGS---------------SG-TST  737 (1057)
T ss_pred             eEEEEECCCCeEE-EEec------------CCcc--c-----------------cCCCC---------------cc-ccc
Confidence            9999998765421 1100            0000  0                 00000               00 001


Q ss_pred             CCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEe-------------c-C--------CCcEEEEEEccCCCC
Q 011126          387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-------------S-H--------NNYVTSVAFNPVDDN  442 (493)
Q Consensus       387 h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~-------------~-h--------~~~V~~v~fsp~d~~  442 (493)
                      .-.....|+++|++  ++++-+.++.|++||+.++......             . +        -.....++++| +++
T Consensus       738 ~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~  816 (1057)
T PLN02919        738 SFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQ  816 (1057)
T ss_pred             cccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCc
Confidence            12345789999997  5566677899999999876532111             0 0        11346899999 899


Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEEecCCC--------------CCeEEEEEccCCCEEEEeecC
Q 011126          443 YFISGSIDGKVRIWEVRRCQVVDYTDIR--------------EIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       443 ~l~sgs~Dg~V~IWdl~~~~~~~~~~~~--------------~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ++++-..+++|++||..++.+....+..              .....|+++++|+++++-+.+
T Consensus       817 LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N  879 (1057)
T PLN02919        817 IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN  879 (1057)
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence            9999999999999999988776543221              257889999999977765543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.45  E-value=3.2e-06  Score=85.61  Aligned_cols=145  Identities=19%  Similarity=0.247  Sum_probs=113.1

Q ss_pred             CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (493)
Q Consensus       246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~  325 (493)
                      +-..++-|...|.|.+|++........     -+-..|.+.|.++.++.+-..|.|++.|+.+..|+..+...+.     
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~-----~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~-----  138 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAK-----LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR-----  138 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEE-----EecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee-----
Confidence            445688899999999999876542211     0124699999999999999999999999999999987665432     


Q ss_pred             CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEE
Q 011126          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS  404 (493)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~s  404 (493)
                                                                               .+.+....+..++.+|++ .|++
T Consensus       139 ---------------------------------------------------------~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen  139 ---------------------------------------------------------IWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             ---------------------------------------------------------eeccCCCccceEEEcCCCCEEEe
Confidence                                                                     233445667889999999 8888


Q ss_pred             EeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCC-----CCEEEEE-eCCCeEEEEeCCC
Q 011126          405 SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVD-----DNYFISG-SIDGKVRIWEVRR  460 (493)
Q Consensus       405 gs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d-----~~~l~sg-s~Dg~V~IWdl~~  460 (493)
                      ++  ++|++||+.+++.+.+|. |.++|.+++|.- .     |.+|+++ ..+.-+.+|-+..
T Consensus       162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~-~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT-LIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cc--ceEEEEEccCceEEEEecCCCcceEEEEEEE-eccccccceeeeccccccceeEEEEEc
Confidence            86  589999999999999997 999999999987 5     5666654 4455577786654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1.6e-06  Score=84.97  Aligned_cols=203  Identities=17%  Similarity=0.135  Sum_probs=137.8

Q ss_pred             eccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEEEecCCCeeeee
Q 011126          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDG  321 (493)
Q Consensus       243 fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~iWdl~~~~~~~~  321 (493)
                      +..-.+++.+++.||.++.|.-..    .........+.+|-+.|..++.+.+|.++.|.+. |..++++|+.+-..+.-
T Consensus        16 ~~tka~fiiqASlDGh~KFWkKs~----isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm   91 (558)
T KOG0882|consen   16 FPTKAKFIIQASLDGHKKFWKKSR----ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM   91 (558)
T ss_pred             eeehhheEEeeecchhhhhcCCCC----ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh
Confidence            444557899999999999997543    1222333456789999999999999999999887 99999999987766655


Q ss_pred             eeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-
Q 011126          322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-  400 (493)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-  400 (493)
                      ++....+..+..+. .....+.           ...+....++.+.+++...-..  +....-.-|..+|.++.+++-+ 
T Consensus        92 iKL~~lPg~a~wv~-skGd~~s-----------~IAVs~~~sg~i~VvD~~~d~~--q~~~fkklH~sPV~~i~y~qa~D  157 (558)
T KOG0882|consen   92 IKLVDLPGFAEWVT-SKGDKIS-----------LIAVSLFKSGKIFVVDGFGDFC--QDGYFKKLHFSPVKKIRYNQAGD  157 (558)
T ss_pred             cccccCCCceEEec-CCCCeee-----------eEEeecccCCCcEEECCcCCcC--ccceecccccCceEEEEeecccc
Confidence            55443333222221 1111111           1112223334444444432111  1223334599999999999998 


Q ss_pred             eEEEEeCCCeEEEEECCC------CcEEEEe----------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          401 FLLSSSADKTVRLWQVGI------DRCLRVF----------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~~------~~~~~~~----------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      .+++....|.|.-|....      ......+          +.....+++.|+| ++..+.+-+.|.+|++++.++++++
T Consensus       158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhh
Confidence            888888889999998762      1111111          2456789999999 9999999999999999999998754

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.43  E-value=8.2e-07  Score=58.40  Aligned_cols=37  Identities=46%  Similarity=0.934  Sum_probs=34.7

Q ss_pred             cceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEE
Q 011126          379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQ  415 (493)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd  415 (493)
                      +++..+.+|...|++|+|+|++ +|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3578899999999999999998 999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.43  E-value=0.00024  Score=68.58  Aligned_cols=236  Identities=13%  Similarity=0.160  Sum_probs=139.8

Q ss_pred             cccccceeccCCCeEEeeec---CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEEE
Q 011126          236 DRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVW  311 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~---dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~iW  311 (493)
                      ....-++|+|++++|.++..   .|.|..|.+......+..+. .+.+.++  +-..++++++|++|+++.+ -|.|.++
T Consensus        40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln-~~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN-RQTLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee-ccccCCC--CCeEEEECCCCCEEEEEEccCceEEEE
Confidence            44455899999999988765   47888888876533333221 1122333  2378999999999999875 5789999


Q ss_pred             ecCC-Ceeeee---eeccCC-------C--CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126          312 KVIE-HERLDG---FDVQDT-------D--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (493)
Q Consensus       312 dl~~-~~~~~~---~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (493)
                      -+.. |.....   +.....       .  .....+.+.+ ..++..+...+++......    ++.          +..
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~----dg~----------L~~  181 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLD----DGK----------LTP  181 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcc----cCc----------ccc
Confidence            9865 332211   111111       0  2222222222 1233333333332222111    111          111


Q ss_pred             cceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCC-cE---EEEe-------cCCCcEEEEEEccCCCCEEE
Q 011126          379 KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RC---LRVF-------SHNNYVTSVAFNPVDDNYFI  445 (493)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~-~~---~~~~-------~h~~~V~~v~fsp~d~~~l~  445 (493)
                      .....+ ........|.|+|++  ..+.+-.+++|.+|..... ..   ++.+       ........|.++| +|++|.
T Consensus       182 ~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLY  259 (346)
T COG2706         182 ADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLY  259 (346)
T ss_pred             cccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEE
Confidence            011112 234566889999999  4456667999999998763 22   2222       1446778899999 999999


Q ss_pred             EEeC-CCeEEEEeCC--CCeEE--E-ecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          446 SGSI-DGKVRIWEVR--RCQVV--D-YTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       446 sgs~-Dg~V~IWdl~--~~~~~--~-~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ++.. ...|.++.+.  ++++.  . +..+........|+|+|++|++++.+
T Consensus       260 asNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~  311 (346)
T COG2706         260 ASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK  311 (346)
T ss_pred             EecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence            8754 2468888776  34433  3 33344447899999999999998754

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.38  E-value=1.2e-06  Score=98.33  Aligned_cols=161  Identities=19%  Similarity=0.315  Sum_probs=114.9

Q ss_pred             eecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCC-CCceEEEeeCCCCceeeeeccCccccceeee
Q 011126          280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSL  358 (493)
Q Consensus       280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (493)
                      +..|-..|.+|.=+|...+.+||+.||.|++|....++.+..+..... .+..+.|+..+..  .              .
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk--~--------------~ 2267 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNK--F--------------G 2267 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCc--e--------------e
Confidence            345667788888899889999999999999999988887776655433 1222222222211  1              1


Q ss_pred             ecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEE---eCCCeEEEEECCCCc---EEEEecCCCcEE
Q 011126          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS---SADKTVRLWQVGIDR---CLRVFSHNNYVT  432 (493)
Q Consensus       359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sg---s~Dg~V~lWd~~~~~---~~~~~~h~~~V~  432 (493)
                      ....|+.+-+|...     .++....+.|.....++.|-.. .++++   +.++.+.+||..-..   +++ -.|...++
T Consensus      2268 i~d~dg~l~l~q~~-----pk~~~s~qchnk~~~Df~Fi~s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT 2340 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQAS-----PKPYTSWQCHNKALSDFRFIGS-LLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGAT 2340 (2439)
T ss_pred             eeccCCceeecccC-----CcceeccccCCccccceeeeeh-hhhccccCCCCCcccchhcccCcccceee-eecCCCce
Confidence            12233444444333     5667778889999999999764 45544   357889999975332   333 34999999


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       433 ~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      ++++-| ..++|++|+.+|.|++||++..++.
T Consensus      2341 ~l~~~P-~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2341 VLAYAP-KHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred             EEEEcC-cceEEEecCCcCcEEEeehHHHHHH
Confidence            999999 8999999999999999999987765

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.37  E-value=1.8e-06  Score=82.01  Aligned_cols=161  Identities=15%  Similarity=0.235  Sum_probs=112.4

Q ss_pred             eeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCce
Q 011126          252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC  331 (493)
Q Consensus       252 sgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~  331 (493)
                      +.+.+..|-+-++.++-.        |.|. ..+.|.+++|...++++..|..+|.|...|+.....        ...+ 
T Consensus       229 s~G~sqqv~L~nvetg~~--------qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq--------G~~~-  290 (425)
T KOG2695|consen  229 SVGLSQQVLLTNVETGHQ--------QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ--------GNGW-  290 (425)
T ss_pred             cccccceeEEEEeecccc--------cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc--------CCCc-
Confidence            344566677777764421        1233 677899999999899999999999999999976521        0000 


Q ss_pred             EEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC-CC-eEEEEeCCC
Q 011126          332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADK  409 (493)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g-~l~sgs~Dg  409 (493)
                                                                      +.+. .-|...|+++..-. ++ +|++.+++|
T Consensus       291 ------------------------------------------------~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~g  321 (425)
T KOG2695|consen  291 ------------------------------------------------CAQR-LYHDSSVTSLQILQFSQQKLMASDMTG  321 (425)
T ss_pred             ------------------------------------------------ceEE-EEcCcchhhhhhhccccceEeeccCcC
Confidence                                                            1111 23788888887766 44 999999999


Q ss_pred             eEEEEECCCCcE---EEEec-CCCcE--EEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC-----CeEEEEE
Q 011126          410 TVRLWQVGIDRC---LRVFS-HNNYV--TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE-----IVSAVCY  478 (493)
Q Consensus       410 ~V~lWd~~~~~~---~~~~~-h~~~V--~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~-----~I~sv~~  478 (493)
                      +|++||++.-++   +..+. |-+.-  .-+..+| ....+++++.|...|||.++.++++.....+.     .+.+++|
T Consensus       322 kikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~  400 (425)
T KOG2695|consen  322 KIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAF  400 (425)
T ss_pred             ceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceeh
Confidence            999999997777   55543 43222  2234456 66788889999999999999999986554443     3556666


Q ss_pred             cc
Q 011126          479 CP  480 (493)
Q Consensus       479 sp  480 (493)
                      ..
T Consensus       401 ~s  402 (425)
T KOG2695|consen  401 DS  402 (425)
T ss_pred             hc
Confidence            53

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.35  E-value=1.6e-06  Score=89.63  Aligned_cols=178  Identities=19%  Similarity=0.293  Sum_probs=128.6

Q ss_pred             ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECCCcEEEEecCCCeeeeee
Q 011126          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGF  322 (493)
Q Consensus       244 sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~V~iWdl~~~~~~~~~  322 (493)
                      +|-..+-++......-.||++.+.......+    .+.+|..+|+.+.|+|.. ..|++++.|-.|..||+.+...    
T Consensus        78 h~a~~~wiVsts~qkaiiwnlA~ss~~aIef----~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~----  149 (1081)
T KOG0309|consen   78 HPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF----VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR----  149 (1081)
T ss_pred             CCCCceeEEecCcchhhhhhhhcCCccceEE----EEecCccceeccccCCCCCcceeeccccccceeeeccCCCc----
Confidence            4445566666667777889887554332222    367899999999999954 4899999999999999876432    


Q ss_pred             eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-e
Q 011126          323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F  401 (493)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~  401 (493)
                                                                               |+..+..-...-..++|+-.. .
T Consensus       150 ---------------------------------------------------------p~ys~~~w~s~asqVkwnyk~p~  172 (1081)
T KOG0309|consen  150 ---------------------------------------------------------PFYSTSSWRSAASQVKWNYKDPN  172 (1081)
T ss_pred             ---------------------------------------------------------ceeeeecccccCceeeecccCcc
Confidence                                                                     111122223345678888765 6


Q ss_pred             EEEEeCCCeEEEEECCCCc-EEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe--EEEecCCCCCeEEEE
Q 011126          402 LLSSSADKTVRLWQVGIDR-CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREIVSAVC  477 (493)
Q Consensus       402 l~sgs~Dg~V~lWd~~~~~-~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~--~~~~~~~~~~I~sv~  477 (493)
                      +++.+..+-|++||++.+. ++..++ |...|+.+.|+......+.+++.||+|++||.....  .........+|+.-+
T Consensus       173 vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r  252 (1081)
T KOG0309|consen  173 VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGR  252 (1081)
T ss_pred             hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecc
Confidence            7777788899999998654 455554 888999999988667789999999999999997553  234555667888888


Q ss_pred             EccCCCEEE
Q 011126          478 YCPDGKVRQ  486 (493)
Q Consensus       478 ~spdG~~l~  486 (493)
                      |-|=|....
T Consensus       253 ~~Pfg~g~~  261 (1081)
T KOG0309|consen  253 YLPFGEGYC  261 (1081)
T ss_pred             ccccCceeE
Confidence            888776544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.32  E-value=0.00017  Score=81.07  Aligned_cols=243  Identities=16%  Similarity=0.183  Sum_probs=141.5

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCC-----------------------cccccc--------------ccc
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----------------------QSRELS--------------SLY  275 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~-----------------------~~~~~~--------------~~~  275 (493)
                      .....+.+++|+||+.+||..+.+++|.+-...=                       ++++-+              ...
T Consensus       118 ~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  118 SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            3445777899999999999999999887753210                       000000              000


Q ss_pred             c----ceeeecccCCEEEEEEccCCCEEEEEEC---C---CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeee
Q 011126          276 T----GQEFLAHEGSILTMKFSLDGQYLASGGE---D---GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI  345 (493)
Q Consensus       276 ~----~~~l~~H~~~I~~l~fspdg~~Lasgs~---D---g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (493)
                      .    ...+. +.+.-..|.|-.||.|+|+.+.   .   ..+|||+-. |.....-.....-..++.|.|.+.- +...
T Consensus       198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~l-IA~~  274 (928)
T PF04762_consen  198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNL-IASS  274 (928)
T ss_pred             CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCE-EEEE
Confidence            0    00122 4445678999999999998774   3   479999853 5544333322222334555555421 1111


Q ss_pred             eccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEE--
Q 011126          346 DVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--  422 (493)
Q Consensus       346 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~--  422 (493)
                      .            .......++.+.....+-.+ ....+......|..|+|++++ .||..-.|. |.+|-..+..-.  
T Consensus       275 q------------~~~~~~~VvFfErNGLrhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK  340 (928)
T PF04762_consen  275 Q------------RLPDRHDVVFFERNGLRHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK  340 (928)
T ss_pred             E------------EcCCCcEEEEEecCCcEeee-EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE
Confidence            1            11112334444333222111 111112345688999999999 777766555 999998876532  


Q ss_pred             EEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC----CC---------eE-------EE---------------
Q 011126          423 RVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RC---------QV-------VD---------------  465 (493)
Q Consensus       423 ~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~----~~---------~~-------~~---------------  465 (493)
                      +.+  .....+..+.|+|.+...|...+.+|.+.+++..    .+         .+       +.               
T Consensus       341 qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~  420 (928)
T PF04762_consen  341 QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSS  420 (928)
T ss_pred             EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhc
Confidence            222  2344566699999888888888887777665542    11         00       00               


Q ss_pred             -ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          466 -YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       466 -~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                       ......+|.+++|++++..+++-.+|+
T Consensus       421 ~~l~~~~~v~~vaf~~~~~~~avl~~d~  448 (928)
T PF04762_consen  421 YELELPSPVNDVAFSPSNSRFAVLTSDG  448 (928)
T ss_pred             eEEcCCCCcEEEEEeCCCCeEEEEECCC
Confidence             122456799999999997666665554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.30  E-value=4.9e-05  Score=86.72  Aligned_cols=183  Identities=9%  Similarity=0.070  Sum_probs=111.8

Q ss_pred             ccceecc-CCCeEEeeecCCeEEEEECCCccccccccc-cceeeec------ccCCEEEEEEccCCCEE-EEEECCCcEE
Q 011126          239 GSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLY-TGQEFLA------HEGSILTMKFSLDGQYL-ASGGEDGTVR  309 (493)
Q Consensus       239 ~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~-~~~~l~~------H~~~I~~l~fspdg~~L-asgs~Dg~V~  309 (493)
                      ..++|+| ++.++++...+++|++|+........-... ......+      .-...+.|+|+|+|++| ++-..++.|+
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir  765 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR  765 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence            3489999 566777777889999999865432110000 0000011      11245679999999855 4555678999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      +||+.++.......  ......        ..+..+              +..++.               .  ....-.
T Consensus       766 v~D~~tg~~~~~~g--g~~~~~--------~~l~~f--------------G~~dG~---------------g--~~~~l~  804 (1057)
T PLN02919        766 ALDLKTGGSRLLAG--GDPTFS--------DNLFKF--------------GDHDGV---------------G--SEVLLQ  804 (1057)
T ss_pred             EEECCCCcEEEEEe--cccccC--------cccccc--------------cCCCCc---------------h--hhhhcc
Confidence            99987664211000  000000        000000              000000               0  000112


Q ss_pred             CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecC--------------CCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH--------------NNYVTSVAFNPVDDNYFISGSIDGKVR  454 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h--------------~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (493)
                      ....++++++| ++++-..+++|++||..++........              -.....|+++| +++++++-+.++.|+
T Consensus       805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Ir  883 (1057)
T PLN02919        805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIR  883 (1057)
T ss_pred             CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEE
Confidence            24588999999 888888999999999988776654431              13578899999 999999999999999


Q ss_pred             EEeCCCCeE
Q 011126          455 IWEVRRCQV  463 (493)
Q Consensus       455 IWdl~~~~~  463 (493)
                      +||+.+++.
T Consensus       884 vid~~~~~~  892 (1057)
T PLN02919        884 YLDLNKGEA  892 (1057)
T ss_pred             EEECCCCcc
Confidence            999998765

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=7.6e-07  Score=89.04  Aligned_cols=158  Identities=18%  Similarity=0.327  Sum_probs=112.8

Q ss_pred             eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe-eeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE-RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (493)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (493)
                      +.+.||+..|..+.--.+.+-+++++.|++|++|.+.... .+.        .                           
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~--------t---------------------------  773 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG--------T---------------------------  773 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc--------c---------------------------
Confidence            3578999999999887788889999999999999985321 000        0                           


Q ss_pred             eeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEE
Q 011126          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVT  432 (493)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~  432 (493)
                                           ..+..++..|..+|.++.|-.+. +++++  |+-|++||.--++.+....   ..+.++
T Consensus       774 ---------------------saCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~  830 (1034)
T KOG4190|consen  774 ---------------------SACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGG  830 (1034)
T ss_pred             ---------------------ceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCc
Confidence                                 01134567899999999998876 55554  8999999988887776442   223333


Q ss_pred             EEEEccC-CCCEEEEE-eCCCeEEEEeCCCCeEEE-e-----cCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          433 SVAFNPV-DDNYFISG-SIDGKVRIWEVRRCQVVD-Y-----TDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       433 ~v~fsp~-d~~~l~sg-s~Dg~V~IWdl~~~~~~~-~-----~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      .|.--|. +..+++.| +...+|+++|.+.+..+. |     ......+.+++..|.|++++++=+++|
T Consensus       831 ~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGc  899 (1034)
T KOG4190|consen  831 NIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGC  899 (1034)
T ss_pred             eeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCc
Confidence            3433332 44455555 778999999999887552 2     344567899999999999988766655

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.23  E-value=5.6e-06  Score=76.01  Aligned_cols=71  Identities=20%  Similarity=0.317  Sum_probs=61.5

Q ss_pred             CEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       390 ~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      .|++++-+|..  ++++|+.||.+-|||++.......+  .|+.+++-|.|+|.++..|.+++.||.+.-||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            38888888876  8889999999999999977443332  39999999999999999999999999999999874

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.22  E-value=4.9e-06  Score=79.19  Aligned_cols=139  Identities=17%  Similarity=0.270  Sum_probs=99.2

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCC
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      |-+..|+..++++..|.+.|.|.+.|++....-  ...+.+.+ -|.+.|++|+.-. ++++|.+.+.+|+|++||+.--
T Consensus       255 VfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG--~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~  331 (425)
T KOG2695|consen  255 VFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG--NGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT  331 (425)
T ss_pred             HHHHHhcccCCeeEecccCCcEEEEEeeecccC--CCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence            344678889999999999999999999865321  12223333 3899999998877 7889999999999999998644


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE-
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS-  395 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~-  395 (493)
                      ++.                                                           +-+.++.||-+.-.-+- 
T Consensus       332 K~~-----------------------------------------------------------~~V~qYeGHvN~~a~l~~  352 (425)
T KOG2695|consen  332 KCK-----------------------------------------------------------KSVMQYEGHVNLSAYLPA  352 (425)
T ss_pred             hcc-----------------------------------------------------------cceeeeeccccccccccc
Confidence            331                                                           11444556654333222 


Q ss_pred             -EeCC-CeEEEEeCCCeEEEEECCCCcEEEEecCC-----CcEEEEEEcc
Q 011126          396 -WSKN-GFLLSSSADKTVRLWQVGIDRCLRVFSHN-----NYVTSVAFNP  438 (493)
Q Consensus       396 -~sp~-g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~-----~~V~~v~fsp  438 (493)
                       ..+. |.+++++.|...|||.++.+..+.++...     ..+.+++|..
T Consensus       353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             ccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence             2333 38888999999999999999999988633     3455566543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.22  E-value=0.00015  Score=81.43  Aligned_cols=229  Identities=14%  Similarity=0.197  Sum_probs=138.3

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEEC----CCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPV----KKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~----~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW  311 (493)
                      +.+.++.+-++...++.+..+|.|.+...    .....+.        ...-...|.+++||||+..|+....+++|.+-
T Consensus        76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~--------VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m  147 (928)
T PF04762_consen   76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI--------VGSVDSGILAASWSPDEELLALVTGEGNLLLM  147 (928)
T ss_pred             CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE--------EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence            45556788889999999999999999943    3222211        12246789999999999999999989988877


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEE--EcCCCceeecccceEEEecCCC
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV--VLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      . .+...+...........        ....+.++|+++...    +.++......  .-++....   .....+. +..
T Consensus       148 t-~~fd~i~E~~l~~~~~~--------~~~~VsVGWGkKeTQ----F~Gs~gK~aa~~~~~p~~~~---~d~~~~s-~dd  210 (928)
T PF04762_consen  148 T-RDFDPISEVPLDSDDFG--------ESKHVSVGWGKKETQ----FHGSAGKAAARQLRDPTVPK---VDEGKLS-WDD  210 (928)
T ss_pred             e-ccceEEEEeecCccccC--------CCceeeeccCcccCc----cCcchhhhhhhhccCCCCCc---cccCccc-cCC
Confidence            5 45555554444322211        122233333332211    1111110000  00000000   0011222 445


Q ss_pred             CEeEEEEeCCC-eEEEEeC---C---CeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeC---CCeEEEEeC
Q 011126          390 EVLDLSWSKNG-FLLSSSA---D---KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEV  458 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~---D---g~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~IWdl  458 (493)
                      .-..|+|-.|| ++|..+.   .   ..||||+-. |....+-. -.+--.+++|.| .|++||+.-.   ...|.+|.-
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr  288 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER  288 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence            66789999999 8887764   2   579999965 54433332 233345789999 9999998765   356788876


Q ss_pred             CCCeEEE----ecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          459 RRCQVVD----YTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       459 ~~~~~~~----~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +.-+.-.    +......|..+.|++|+.+|++--.+
T Consensus       289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~  325 (928)
T PF04762_consen  289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED  325 (928)
T ss_pred             CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence            5433322    22455689999999999999986543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.21  E-value=0.00019  Score=66.46  Aligned_cols=219  Identities=11%  Similarity=-0.020  Sum_probs=121.1

Q ss_pred             CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCCeeeeeeec
Q 011126          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDV  324 (493)
Q Consensus       246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~  324 (493)
                      ...+||.|+..|...+|...+....+.      ....|...|.-+.=.. ....+..++.|.++++.++.-+........
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~  156 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLY------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN  156 (344)
T ss_pred             cccEEEeccccceeeeecccCccccee------eecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec
Confidence            345799999999999999875543222      1122333332222111 223567788999999998865543333222


Q ss_pred             cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE-EEecCCCCEeEEEEeCCC-eE
Q 011126          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWSKNG-FL  402 (493)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~g-~l  402 (493)
                      +......+.+..++  .+....-+.            .+...+-.+.....    .+. ........-.+..|+... .+
T Consensus       157 ~~~~~ns~~~snd~--~~~~~Vgds------------~~Vf~y~id~~sey----~~~~~~a~t~D~gF~~S~s~~~~~F  218 (344)
T KOG4532|consen  157 QNLTQNSLHYSNDP--SWGSSVGDS------------RRVFRYAIDDESEY----IENIYEAPTSDHGFYNSFSENDLQF  218 (344)
T ss_pred             cccceeeeEEcCCC--ceEEEecCC------------CcceEEEeCCccce----eeeeEecccCCCceeeeeccCcceE
Confidence            21111122222111  111111111            11111111111110    111 122234445678899988 99


Q ss_pred             EEEeCCCeEEEEECCCCcEEEEe------cCCCcEEEEEEccCCCC--EEEEEeCCCeEEEEeCCCCeE---EE-----e
Q 011126          403 LSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDN--YFISGSIDGKVRIWEVRRCQV---VD-----Y  466 (493)
Q Consensus       403 ~sgs~Dg~V~lWd~~~~~~~~~~------~h~~~V~~v~fsp~d~~--~l~sgs~Dg~V~IWdl~~~~~---~~-----~  466 (493)
                      |++..||++.|||++........      .|.+.+..+.|+| .|.  +|...-.=+.+.+-|+++++-   +.     .
T Consensus       219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~  297 (344)
T KOG4532|consen  219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVE  297 (344)
T ss_pred             EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCcccc
Confidence            99999999999999865433322      2899999999997 332  344444457899999998753   32     2


Q ss_pred             cCCCC-CeEEEEEccCCCEEEEee
Q 011126          467 TDIRE-IVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       467 ~~~~~-~I~sv~~spdG~~l~s~s  489 (493)
                      ..|.. .|..-+|+.++..+.+..
T Consensus       298 ~~~~tq~ifgt~f~~~n~s~~v~~  321 (344)
T KOG4532|consen  298 RKHNTQHIFGTNFNNENESNDVKN  321 (344)
T ss_pred             ccccccccccccccCCCccccccc
Confidence            22333 378888888877665544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.21  E-value=4.6e-06  Score=85.99  Aligned_cols=157  Identities=17%  Similarity=0.219  Sum_probs=111.7

Q ss_pred             ccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCC
Q 011126          283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS  362 (493)
Q Consensus       283 H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  362 (493)
                      ......|+.|+....|+|.||.||.++|..+.+...-........ +.                                
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa-~s--------------------------------   59 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAA-AS--------------------------------   59 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccc-cc--------------------------------
Confidence            345688999999999999999999999998865432111100000 00                                


Q ss_pred             CceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe---cCCCcEEEEEEcc
Q 011126          363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNP  438 (493)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~---~h~~~V~~v~fsp  438 (493)
                                    .-..-+++.||...|.-+.|+.+. .|.|+..+|.|.||-+-.+.-...+   ...+-|.+++|+.
T Consensus        60 --------------nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~  125 (1189)
T KOG2041|consen   60 --------------NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL  125 (1189)
T ss_pred             --------------ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC
Confidence                          001245688999999999999987 8999999999999998877544333   2667899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEE
Q 011126          439 VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQN  487 (493)
Q Consensus       439 ~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s  487 (493)
                       +|..+...-.||.|.|=.+...++....-.......+.|++|.+.++.
T Consensus       126 -dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf  173 (1189)
T KOG2041|consen  126 -DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALF  173 (1189)
T ss_pred             -CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHh
Confidence             999999999999888877776655421111123446778888765543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.18  E-value=0.00019  Score=73.86  Aligned_cols=99  Identities=13%  Similarity=0.071  Sum_probs=65.2

Q ss_pred             CCEeEEEEeCCC--eEEEEeCC--CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC-C--eEEEEeCCCC
Q 011126          389 SEVLDLSWSKNG--FLLSSSAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRC  461 (493)
Q Consensus       389 ~~V~~l~~sp~g--~l~sgs~D--g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-g--~V~IWdl~~~  461 (493)
                      +......|+|+|  ++++.+.+  ..|.++|+.++.......+........|+| ||+.|+-.+.. |  .|+++|+.++
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g  311 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSG  311 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence            334456799998  44444434  568888988876544433444445678999 99877766542 3  6888899888


Q ss_pred             eEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          462 QVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       462 ~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      +..........  ...|+|||+.|+..+.
T Consensus       312 ~~~rlt~~g~~--~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        312 SVEQVVFHGKN--NSSVSTYKNYIVYSSR  338 (419)
T ss_pred             CeEeCccCCCc--CceECCCCCEEEEEEc
Confidence            77554322221  2489999999887654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.17  E-value=2.5e-05  Score=74.45  Aligned_cols=199  Identities=17%  Similarity=0.252  Sum_probs=113.9

Q ss_pred             eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec-CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV-IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (493)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (493)
                      +.+.||.+.|+....-|-..-+++.+.|.++|||-- ..++.-..+.. ..+..+-..........+.+....+.+....
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs   96 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVTEFA   96 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence            457899999999999887778999999999999953 33333222222 1222222222222222222222222111110


Q ss_pred             eeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEE-----------------------
Q 011126          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVR-----------------------  412 (493)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~-----------------------  412 (493)
                      .   +.+..           .....+....|...|..+-|+-.- .+++.+.|+.+.                       
T Consensus        97 ~---sedfn-----------km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~  162 (404)
T KOG1409|consen   97 L---SEDFN-----------KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ  162 (404)
T ss_pred             h---hhhhh-----------hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence            0   00000           001122333455555555444333 444444443321                       


Q ss_pred             ----------------EEEC--CCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe--EEEecCCCC
Q 011126          413 ----------------LWQV--GIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDYTDIRE  471 (493)
Q Consensus       413 ----------------lWd~--~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~--~~~~~~~~~  471 (493)
                                      +-.+  ..-..+.++ .|.+.+++++|.| ...+|.+|..|..|.+||+..++  .....+|..
T Consensus       163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~  241 (404)
T KOG1409|consen  163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND  241 (404)
T ss_pred             eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchh
Confidence                            1111  111223333 3999999999999 88999999999999999997654  445788888


Q ss_pred             CeEEEEEccCCCEEEEeecCC
Q 011126          472 IVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       472 ~I~sv~~spdG~~l~s~s~d~  492 (493)
                      .|..+++-+--+.+++.+.|.
T Consensus       242 kV~~l~~~~~t~~l~S~~edg  262 (404)
T KOG1409|consen  242 KVQALSYAQHTRQLISCGEDG  262 (404)
T ss_pred             hhhhhhhhhhheeeeeccCCC
Confidence            888888888777777766553

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.12  E-value=2.6e-06  Score=89.67  Aligned_cols=205  Identities=17%  Similarity=0.216  Sum_probs=126.4

Q ss_pred             ccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCc
Q 011126          271 LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKE  350 (493)
Q Consensus       271 ~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (493)
                      ++.+.....|..|+...+|++|+-+.++|+.|+..|.|+++++.+|......+.|...+..+.-..++...+....+...
T Consensus      1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence            44555566788899999999999999999999999999999999999888888887766655544444333332222210


Q ss_pred             ccccee-------------------------eeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEE
Q 011126          351 KIDKTK-------------------------SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS  404 (493)
Q Consensus       351 ~~~~~~-------------------------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~s  404 (493)
                      ....+.                         .+.+.......+++........+.+....+..-.-++..|+|+. +++ 
T Consensus      1168 lsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             hHHHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence            000000                         01111222333343332222111111111222223677899987 443 


Q ss_pred             EeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCE
Q 011126          405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKV  484 (493)
Q Consensus       405 gs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~  484 (493)
                        .||  .+||++..+.++.|..-..-..-.|+| +|+-++.-+     .|||+++.+++.....-+ -..|.|+..|..
T Consensus      1247 --ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP-~g~eVIINS-----EIwD~RTF~lLh~VP~Ld-qc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHP-SGNEVIINS-----EIWDMRTFKLLHSVPSLD-QCAVTFNSTGDV 1315 (1516)
T ss_pred             --eCc--eeeeeccHHHHhhhhhheecccccccC-CCceEEeec-----hhhhhHHHHHHhcCcccc-ceEEEeccCccc
Confidence              244  489999999998887333334567999 888777743     599999988775333222 356788888876


Q ss_pred             EEE
Q 011126          485 RQN  487 (493)
Q Consensus       485 l~s  487 (493)
                      ++.
T Consensus      1316 mYa 1318 (1516)
T KOG1832|consen 1316 MYA 1318 (1516)
T ss_pred             hhh
Confidence            653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.10  E-value=0.00022  Score=66.04  Aligned_cols=92  Identities=14%  Similarity=0.164  Sum_probs=72.1

Q ss_pred             EeEEEEeCCC-eEEEEeCCCeEEEEECCCCc--EEEEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE-E
Q 011126          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV-V  464 (493)
Q Consensus       391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~--~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~-~  464 (493)
                      +..+++++++ ++++.+....|-.|.+....  .+++.  ...+.-.+..|+. ....||++..||++.|||++.-.. .
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccch
Confidence            7789999999 88888888999999886432  22312  2556667889998 888999999999999999996432 2


Q ss_pred             -----EecCCCCCeEEEEEccCCC
Q 011126          465 -----DYTDIREIVSAVCYCPDGK  483 (493)
Q Consensus       465 -----~~~~~~~~I~sv~~spdG~  483 (493)
                           .-..|.+.+..+.|+|-|.
T Consensus       240 ~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  240 AEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             hhhcccCCCCCCceEEEEecCCCc
Confidence                 2456889999999998664

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=0.00095  Score=71.00  Aligned_cols=204  Identities=15%  Similarity=0.190  Sum_probs=116.9

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCC-EEEEEEccCCCEEEEEECCCc-----EEEEecC
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSLDGQYLASGGEDGT-----VRVWKVI  314 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fspdg~~Lasgs~Dg~-----V~iWdl~  314 (493)
                      -++++++..+|.|+.+|.|.+.+-.        +...+.+++|... |..+....+..+|++.++|+.     |+||++.
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s--------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSS--------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEeccc--------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence            4689999999999999999988743        2222457788877 444444434468888888765     8999986


Q ss_pred             CCeeeeeeeccCCCCceE---EEee--CC--CCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126          315 EHERLDGFDVQDTDPSCL---YFTI--NH--LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (493)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~---~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (493)
                      ..+.-       ..+.|+   ...+  ++  ......+.....   ....+.+-.++.+..+...+.+-......-....
T Consensus       101 k~~~n-------~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~---l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~  170 (933)
T KOG2114|consen  101 KVDKN-------NSPQCLYEHRIFTIKNPTNPSPASSLAVSED---LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG  170 (933)
T ss_pred             ccCCC-------CCcceeeeeeeeccCCCCCCCcceEEEEEcc---ccEEEEEecCcEEEEEcCcchhccccceeeeccC
Confidence            43210       001111   0000  00  111111111111   1122233344445444443333222222223334


Q ss_pred             CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE-EEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~-~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      ..+|+.+++..++ -++-...-..|.+|.+....+ +.++. |+..++|..|++..+. |++++ +.-|.+|+....++.
T Consensus       171 ~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~~~c  248 (933)
T KOG2114|consen  171 KEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGRGPC  248 (933)
T ss_pred             CCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCCccee
Confidence            6799999999888 323333456799999985542 34344 8889999999983333 44443 445999999865544

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.01  E-value=0.00031  Score=72.00  Aligned_cols=95  Identities=18%  Similarity=0.303  Sum_probs=74.6

Q ss_pred             cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE-
Q 011126          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV-  463 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~-  463 (493)
                      .....|.+.+++|+. .|+.|+.||.|.+||...+..... .+.-.++.++|+| +|.+|++|+..|.+.+||+.-..+ 
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCccc
Confidence            467789999999998 999999999999999987744433 4566788999999 999999999999999999864321 


Q ss_pred             -------------E---EecCCCCCeEEEEEccCC
Q 011126          464 -------------V---DYTDIREIVSAVCYCPDG  482 (493)
Q Consensus       464 -------------~---~~~~~~~~I~sv~~spdG  482 (493)
                                   +   .+..+...+..+.|.+..
T Consensus       335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~  369 (545)
T PF11768_consen  335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP  369 (545)
T ss_pred             eeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence                         1   123445567777887543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.00059  Score=72.01  Aligned_cols=181  Identities=13%  Similarity=0.273  Sum_probs=114.7

Q ss_pred             CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (493)
Q Consensus       246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~  325 (493)
                      .++.|+.|+..|.|++.+......         +...|...      ..+|.|++||+.||+|.|-.+.+.+....+..+
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~~~---------~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~  112 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGNPK---------TNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK  112 (846)
T ss_pred             hcceeeeccccceEEEEecCCccc---------cccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC
Confidence            356899999999999998764421         12334443      568999999999999999999888776655544


Q ss_pred             CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEE
Q 011126          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS  405 (493)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sg  405 (493)
                      . ++..+++.++-           .+......+.++..+ ++++..+.+. ....+ .+....++|.++.|..+ ++|=+
T Consensus       113 r-piksial~Pd~-----------~~~~sk~fv~GG~ag-lvL~er~wlg-nk~~v-~l~~~eG~I~~i~W~g~-lIAWa  176 (846)
T KOG2066|consen  113 R-PIKSIALHPDF-----------SRQQSKQFVSGGMAG-LVLSERNWLG-NKDSV-VLSEGEGPIHSIKWRGN-LIAWA  176 (846)
T ss_pred             C-cceeEEeccch-----------hhhhhhheeecCcce-EEEehhhhhc-Cccce-eeecCccceEEEEecCc-EEEEe
Confidence            2 23344443331           011222233344444 4443333222 22222 45556789999999754 66666


Q ss_pred             eCCCeEEEEECCCCcEEEEec-------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126          406 SADKTVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       406 s~Dg~V~lWd~~~~~~~~~~~-------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~  461 (493)
                      +.+| |+|||+.+++.+..+.       .......+.|.+  ...|+.|= .-+|+|..++.+
T Consensus       177 nd~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~--~~~LVIGW-~d~v~i~~I~~~  235 (846)
T KOG2066|consen  177 NDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD--EDRLVIGW-GDSVKICSIKKR  235 (846)
T ss_pred             cCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecC--CCeEEEec-CCeEEEEEEecc
Confidence            6555 8999999998887775       223456688876  44556654 447999988833

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.98  E-value=0.00096  Score=66.40  Aligned_cols=102  Identities=9%  Similarity=0.082  Sum_probs=86.1

Q ss_pred             cCCCCEeEEEEeCCC-eEEEEeCCC-eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          386 GHSSEVLDLSWSKNG-FLLSSSADK-TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g-~l~sgs~Dg-~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      +|.+.|.-..+.-++ -++.|..|| .+-|+|..+++..+....-+.|.++..+| +|.+++.+.....|.+.|+.++.+
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe
Confidence            456667776676666 788888888 89999999998877777888999999999 999999999999999999999987


Q ss_pred             EEe-cCCCCCeEEEEEccCCCEEEEe
Q 011126          464 VDY-TDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       464 ~~~-~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      ... ....+.|+.+.|||+++++|-+
T Consensus       436 ~~idkS~~~lItdf~~~~nsr~iAYa  461 (668)
T COG4946         436 RLIDKSEYGLITDFDWHPNSRWIAYA  461 (668)
T ss_pred             eEecccccceeEEEEEcCCceeEEEe
Confidence            654 3445679999999999999865

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.98  E-value=0.00015  Score=77.12  Aligned_cols=177  Identities=16%  Similarity=0.211  Sum_probs=128.2

Q ss_pred             cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeec
Q 011126          245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV  324 (493)
Q Consensus       245 p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~  324 (493)
                      -++..++.|+-...+..+|+.+....       +...-..+.|.-|+.  ++++|.+|...|+|.+-|..+.+.      
T Consensus       145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e~-------r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~------  209 (1118)
T KOG1275|consen  145 MGPSTLIMGGLQEKLIHIDLNTEKET-------RTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFET------  209 (1118)
T ss_pred             cCCcceeecchhhheeeeecccceee-------eeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCce------
Confidence            35567777877777878887644321       111222334666665  588999999999999998865543      


Q ss_pred             cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEE
Q 011126          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLS  404 (493)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~s  404 (493)
                                                                              ++++..|++.|.++....+ .|++
T Consensus       210 --------------------------------------------------------iht~~aHs~siSDfDv~GN-lLit  232 (1118)
T KOG1275|consen  210 --------------------------------------------------------IHTFDAHSGSISDFDVQGN-LLIT  232 (1118)
T ss_pred             --------------------------------------------------------eeeeeccccceeeeeccCC-eEEE
Confidence                                                                    5667788888887766433 7777


Q ss_pred             Ee---------CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEe---CCCC--eEEEecCCC
Q 011126          405 SS---------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE---VRRC--QVVDYTDIR  470 (493)
Q Consensus       405 gs---------~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd---l~~~--~~~~~~~~~  470 (493)
                      |+         .|..|+|||++..+.+..+.......-+.|+|.-...++.++..|...+-|   +.+.  .+.......
T Consensus       233 CG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~  312 (1118)
T KOG1275|consen  233 CGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNG  312 (1118)
T ss_pred             eecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCC
Confidence            75         467899999999988888874444577899997778899999999999999   4333  222344445


Q ss_pred             CCeEEEEEccCCCEEEEeecCCC
Q 011126          471 EIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       471 ~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      ..+.+++++++|+.++.+-.+++
T Consensus       313 s~i~~fDiSsn~~alafgd~~g~  335 (1118)
T KOG1275|consen  313 SGISAFDISSNGDALAFGDHEGH  335 (1118)
T ss_pred             CcceeEEecCCCceEEEecccCc
Confidence            56999999999999999876653

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.95  E-value=0.00017  Score=75.43  Aligned_cols=151  Identities=17%  Similarity=0.255  Sum_probs=113.0

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC------C------CEEEEEECC
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------G------QYLASGGED  305 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g------~~Lasgs~D  305 (493)
                      .+++.|+|.| ++|.|+. ..|.|-|..       .+...|.+..|+..|+.++|.|-      +      -+||++...
T Consensus        18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~-------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~   88 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSH-SLVSVVDSR-------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS   88 (1062)
T ss_pred             ccccccCccc-eEEEecC-ceEEEEehh-------hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence            3457888887 5566654 457777754       34456678889999999999872      1      257788888


Q ss_pred             CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      |.|.+||...+..                                                              +..+.
T Consensus        89 GrIil~d~~~~s~--------------------------------------------------------------~~~l~  106 (1062)
T KOG1912|consen   89 GRIILVDFVLASV--------------------------------------------------------------INWLS  106 (1062)
T ss_pred             CcEEEEEehhhhh--------------------------------------------------------------hhhhc
Confidence            9999999865432                                                              22244


Q ss_pred             cCCCCEeEEEEeCCC-----eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          386 GHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g-----~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      .|..++.+++|-+..     .|++-....+|.+|+..+|+.+.... ...+..|+.+.|.+.+.|..-+..|.|.+-+.-
T Consensus       107 ~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l  186 (1062)
T KOG1912|consen  107 HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL  186 (1062)
T ss_pred             CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence            567778888887632     67777778899999999999888776 345667799999999999998999998888764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.92  E-value=0.0074  Score=60.14  Aligned_cols=79  Identities=10%  Similarity=0.128  Sum_probs=62.9

Q ss_pred             CCCEeEEEEeCCC-eEEEEe----------CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCC-EEEEEe-CCCeEE
Q 011126          388 SSEVLDLSWSKNG-FLLSSS----------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGS-IDGKVR  454 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs----------~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~-~l~sgs-~Dg~V~  454 (493)
                      .+.+.-++++|++ +++...          ..+.|.++|..+++.+..+.-...+..|+++| |++ +|++.. .++.|.
T Consensus       247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~-Dgkp~lyvtn~~s~~Vs  325 (352)
T TIGR02658       247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQ-DAKPLLYALSTGDKTLY  325 (352)
T ss_pred             CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECC-CCCeEEEEeCCCCCcEE
Confidence            3444459999998 444421          22589999999999999999888999999999 888 777665 578899


Q ss_pred             EEeCCCCeEEEec
Q 011126          455 IWEVRRCQVVDYT  467 (493)
Q Consensus       455 IWdl~~~~~~~~~  467 (493)
                      |.|+.+++.+...
T Consensus       326 ViD~~t~k~i~~i  338 (352)
T TIGR02658       326 IFDAETGKELSSV  338 (352)
T ss_pred             EEECcCCeEEeee
Confidence            9999999888644

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.85  E-value=6.2e-05  Score=78.25  Aligned_cols=179  Identities=15%  Similarity=0.193  Sum_probs=115.5

Q ss_pred             cCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccC--CCCceEEEeeCCCCceeeeeccCccccceeeeecC
Q 011126          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS  361 (493)
Q Consensus       284 ~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  361 (493)
                      .+++.++..+|.|+-+|.++.-| +.+-|+...-....+-.+.  -.+....|++........+.+...+...+.. ..+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl-A~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL-AKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhh-hcC
Confidence            46788899999999999988877 5666765433222221111  1223344555444444444444433322222 222


Q ss_pred             CCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc-EEEEec-CCCcEEEEEEc
Q 011126          362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-CLRVFS-HNNYVTSVAFN  437 (493)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~-~~~~~~-h~~~V~~v~fs  437 (493)
                      .+..+              -..+.||...|+++.|+|+.  .+++++.|-.|..||+++.. ++..+. -....+.|.|+
T Consensus       102 s~~aI--------------ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn  167 (1081)
T KOG0309|consen  102 SSNAI--------------EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN  167 (1081)
T ss_pred             Cccce--------------EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence            22211              23467999999999999987  99999999999999999754 444443 44566789999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCe-EE-EecCCCCCeEEEEEc
Q 011126          438 PVDDNYFISGSIDGKVRIWEVRRCQ-VV-DYTDIREIVSAVCYC  479 (493)
Q Consensus       438 p~d~~~l~sgs~Dg~V~IWdl~~~~-~~-~~~~~~~~I~sv~~s  479 (493)
                      -.++..+|+ +....|++||++.+. ++ ...+|...|+.+.|.
T Consensus       168 yk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fn  210 (1081)
T KOG0309|consen  168 YKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFN  210 (1081)
T ss_pred             ccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHh
Confidence            977776665 566779999999764 33 456666667666654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.83  E-value=6.4e-05  Score=69.22  Aligned_cols=72  Identities=17%  Similarity=0.434  Sum_probs=59.2

Q ss_pred             CEEEEEEccC-CCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc
Q 011126          286 SILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (493)
Q Consensus       286 ~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  364 (493)
                      .|.+++-+|. .+++++|+.||.+.+||.+...                                               
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-----------------------------------------------  213 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-----------------------------------------------  213 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEccccc-----------------------------------------------
Confidence            3999999995 4567788899999999986542                                               


Q ss_pred             eEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC
Q 011126          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI  418 (493)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~  418 (493)
                                    .|...+..|..+|..+.|+|.+  .|++++.||.+.-||..+
T Consensus       214 --------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  214 --------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             --------------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence                          1234467799999999999987  999999999999999874

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.82  E-value=0.0016  Score=61.22  Aligned_cols=182  Identities=15%  Similarity=0.169  Sum_probs=101.1

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeee-cccCCEEEEEEccCC------CEEEEEECCCcEEEEec
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDG------QYLASGGEDGTVRVWKV  313 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg------~~Lasgs~Dg~V~iWdl  313 (493)
                      ++|+||+.+||.+...|+|+|+|+-....-  .+.....+. .-..+|-.|.|.+..      ..|+.-.++|.++-|-+
T Consensus        49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~lf--~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v  126 (282)
T PF15492_consen   49 LAWSPDCTLLAYAESTGTIRVFDLMGSELF--VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV  126 (282)
T ss_pred             EEECCCCcEEEEEcCCCeEEEEecccceeE--EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence            899999999999999999999998753321  111111111 234578888886532      25666778888888876


Q ss_pred             CCC-----eeeeeeeccC---CCCceEEEeeCCCCceeeeeccCcc-----------ccceeeeecCCCceEEEcC-CCc
Q 011126          314 IEH-----ERLDGFDVQD---TDPSCLYFTINHLSQLIPIDVDKEK-----------IDKTKSLRKSSDLTCVVLP-PKV  373 (493)
Q Consensus       314 ~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~~~~-~~~  373 (493)
                      ..+     +....+....   ..+..+.+.+.+.  ++.++-....           +..++.+........+.-. ...
T Consensus       127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~--LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~  204 (282)
T PF15492_consen  127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR--LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI  204 (282)
T ss_pred             EcccCCcceeeEEEEecccCCCceeEEEEcCCCC--EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence            432     2233333322   2344444444442  3222211111           1111222211111111100 000


Q ss_pred             ------eeeccc-ceEEE---ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec
Q 011126          374 ------FRLLEK-PLHEF---QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS  426 (493)
Q Consensus       374 ------~~~~~~-~~~~~---~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~  426 (493)
                            ..+... ....+   ......|..|..||+| .|++...+|.|.||++.+-+.++.+.
T Consensus       205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence                  000000 11111   1245689999999999 99999999999999999888777765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.82  E-value=0.00014  Score=68.58  Aligned_cols=152  Identities=16%  Similarity=0.300  Sum_probs=95.2

Q ss_pred             ecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeec
Q 011126          281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (493)
Q Consensus       281 ~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (493)
                      .+|.--|++|.|+.|...++++ .|-.|.+|++........                                       
T Consensus       169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFn---------------------------------------  208 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFN---------------------------------------  208 (460)
T ss_pred             ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceE---------------------------------------
Confidence            4677788999999888888776 466788998743221000                                       


Q ss_pred             CCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc-E---EEEec--------
Q 011126          361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-C---LRVFS--------  426 (493)
Q Consensus       361 s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~-~---~~~~~--------  426 (493)
                             +.+.+        -+.+..-..-|++..|+|..  .+.-.+..|.|++-|++... |   .+.+.        
T Consensus       209 -------IVDiK--------P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~  273 (460)
T COG5170         209 -------IVDIK--------PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV  273 (460)
T ss_pred             -------EEecc--------CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc
Confidence                   00000        01111223457788899975  67777788999999998321 1   11111        


Q ss_pred             -----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe-EEEec-CC------------CCCe---EEEEEccCCCE
Q 011126          427 -----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VVDYT-DI------------REIV---SAVCYCPDGKV  484 (493)
Q Consensus       427 -----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~-~~~~~-~~------------~~~I---~sv~~spdG~~  484 (493)
                           ....|..+.|+| +|+|+++-.. -+|+|||++..+ ++... -|            .+.|   ..+.|+-|.+.
T Consensus       274 ~ff~eivsSISD~kFs~-ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~  351 (460)
T COG5170         274 DFFEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKH  351 (460)
T ss_pred             hhHHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccc
Confidence                 234678899999 9999998654 479999998543 33211 11            1222   35678888777


Q ss_pred             EEEee
Q 011126          485 RQNSA  489 (493)
Q Consensus       485 l~s~s  489 (493)
                      +++|+
T Consensus       352 v~sgs  356 (460)
T COG5170         352 VLSGS  356 (460)
T ss_pred             ccccc
Confidence            77765

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.82  E-value=0.0037  Score=59.24  Aligned_cols=191  Identities=14%  Similarity=0.164  Sum_probs=97.3

Q ss_pred             eecccCCEEEEEEccCCC-EEEEEECCCcEEEEecCCCeeeeeeeccCC-CCceEEEeeCCCCceeeeeccCccccceee
Q 011126          280 FLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (493)
Q Consensus       280 l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (493)
                      +.+-...+..|.|+|+.. ++++....+.|...+. +|+.+..+..... ..-.+.+..+  ..++... +         
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~--~~~vl~~-E---------   83 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN--GRYVLSE-E---------   83 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST--TEEEEEE-T---------
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC--CEEEEEE-c---------
Confidence            444455699999999755 5666777888888886 5788877766542 2333333211  1111111 1         


Q ss_pred             eecCCCceEEEcCC----Cceeecc-cc--eEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC---CcEEEEec
Q 011126          358 LRKSSDLTCVVLPP----KVFRLLE-KP--LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---DRCLRVFS  426 (493)
Q Consensus       358 ~~~s~~~~~~~~~~----~~~~~~~-~~--~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~---~~~~~~~~  426 (493)
                          ....++.+..    ....... +.  +.....+...+-.|+|.|.+ .|+.+-...-.+||.+..   ...+....
T Consensus        84 ----r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~  159 (248)
T PF06977_consen   84 ----RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD  159 (248)
T ss_dssp             ----TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred             ----CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence                1111211111    0000000 00  01112355678999999986 666667777777777654   22222211


Q ss_pred             ---------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC----------CCCeEEEEEccCCCEEEE
Q 011126          427 ---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI----------REIVSAVCYCPDGKVRQN  487 (493)
Q Consensus       427 ---------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~----------~~~I~sv~~spdG~~l~s  487 (493)
                               ....+.+++++|..+.+++.......|.++| .+|+++.....          -...-.|+|.|+|++.++
T Consensus       160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv  238 (248)
T PF06977_consen  160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV  238 (248)
T ss_dssp             -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred             ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence                     4456899999998888889988999999999 56666532111          135789999999988777


Q ss_pred             e
Q 011126          488 S  488 (493)
Q Consensus       488 ~  488 (493)
                      +
T Consensus       239 s  239 (248)
T PF06977_consen  239 S  239 (248)
T ss_dssp             E
T ss_pred             c
Confidence            6

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.0009  Score=65.38  Aligned_cols=76  Identities=16%  Similarity=0.228  Sum_probs=60.3

Q ss_pred             eecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECCCcEEEE
Q 011126          234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVW  311 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~V~iW  311 (493)
                      +...+..++|+|..+ ++..++.+..|+|.|+....       ..+.+.+| ..+++++|.-|. ++|+.|-..|.|.||
T Consensus       192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy  263 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY  263 (463)
T ss_pred             cchhhhhhccCccccceeeeeccCceEEEEecccce-------eeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence            334555689999988 78889999999999988554       33346667 789999998854 588888899999999


Q ss_pred             ecCCCe
Q 011126          312 KVIEHE  317 (493)
Q Consensus       312 dl~~~~  317 (493)
                      |+...+
T Consensus       264 D~R~~~  269 (463)
T KOG1645|consen  264 DMRQPE  269 (463)
T ss_pred             EccCCC
Confidence            996543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.81  E-value=0.0021  Score=65.33  Aligned_cols=243  Identities=13%  Similarity=0.143  Sum_probs=125.3

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccc-----cc-------------------------------cccceeee
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSREL-----SS-------------------------------LYTGQEFL  281 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~-----~~-------------------------------~~~~~~l~  281 (493)
                      +..+.|.++..-|++|...|.|.||.+.+.+..-     ..                               +.+..-+.
T Consensus         4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~   83 (395)
T PF08596_consen    4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD   83 (395)
T ss_dssp             EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred             EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence            4558899999999999999999999775432110     00                               00111234


Q ss_pred             cccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccC--------CCCceEEEeeCCCCceeeeeccCcccc
Q 011126          282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD--------TDPSCLYFTINHLSQLIPIDVDKEKID  353 (493)
Q Consensus       282 ~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (493)
                      ...++|++++.|.=| ++|.|.++|.+.|.|++....+..-....        ..+.++.|.        .+....+...
T Consensus        84 ~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~--------vm~~~~D~yS  154 (395)
T PF08596_consen   84 AKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS--------VMTLGGDGYS  154 (395)
T ss_dssp             --S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE--------EEE-TTSSSE
T ss_pred             ccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE--------EEecCCCccc
Confidence            567899999998544 99999999999999998888776644333        112222222        2223333333


Q ss_pred             ceeeeecCCCceEEEcCCCc---eeecccceEEEecCCCCEeEEE-EeC-----------------CC----eEEEEeCC
Q 011126          354 KTKSLRKSSDLTCVVLPPKV---FRLLEKPLHEFQGHSSEVLDLS-WSK-----------------NG----FLLSSSAD  408 (493)
Q Consensus       354 ~~~~~~~s~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~V~~l~-~sp-----------------~g----~l~sgs~D  408 (493)
                      ....+.++..+.++.+..-.   .............+.++|..|. ++.                 .|    -++....+
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe  234 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE  234 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence            44444555555555543310   0111111222234556665554 221                 11    23444457


Q ss_pred             CeEEEEECCCCcEEEEec-CCCcEEEEEEcc----CCCCEEEEEeCCCeEEEEeCCCCeEEEecCC-----CCCeEEEEE
Q 011126          409 KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP----VDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-----REIVSAVCY  478 (493)
Q Consensus       409 g~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp----~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~-----~~~I~sv~~  478 (493)
                      ..+||+...+.+..+... ..-.+..+.+-+    ..+..|++-..+|.|+++.+..-+.+.....     ...+...++
T Consensus       235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi  314 (395)
T PF08596_consen  235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI  314 (395)
T ss_dssp             SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred             cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence            889999998777655443 222333444521    1566788889999999999998776632222     123556778


Q ss_pred             ccCCCEEEEee
Q 011126          479 CPDGKVRQNSA  489 (493)
Q Consensus       479 spdG~~l~s~s  489 (493)
                      +++|..++-.+
T Consensus       315 s~~Gdi~~~~g  325 (395)
T PF08596_consen  315 SRNGDIFYWTG  325 (395)
T ss_dssp             -TTS-EEEE-S
T ss_pred             CCCCCEEEEeC
Confidence            99999876544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.79  E-value=0.0038  Score=64.27  Aligned_cols=101  Identities=16%  Similarity=0.278  Sum_probs=72.0

Q ss_pred             CCEeEEEEeCCC--eEEEE----eCCCe----EEEEECCCCcE----EEEecCCCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126          389 SEVLDLSWSKNG--FLLSS----SADKT----VRLWQVGIDRC----LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (493)
Q Consensus       389 ~~V~~l~~sp~g--~l~sg----s~Dg~----V~lWd~~~~~~----~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (493)
                      ....++.|+...  .+.|.    +.+|.    -.+|++...+.    +..+.....|.|++++| +...|+.|+.||.|.
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii  284 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII  284 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence            344667777643  34332    33443    34566654432    22334888999999999 999999999999999


Q ss_pred             EEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       455 IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +||...+.. ......-.++.++|+|+|.++++++..
T Consensus       285 LyD~~~~~t-~~~ka~~~P~~iaWHp~gai~~V~s~q  320 (545)
T PF11768_consen  285 LYDTTRGVT-LLAKAEFIPTLIAWHPDGAIFVVGSEQ  320 (545)
T ss_pred             EEEcCCCee-eeeeecccceEEEEcCCCcEEEEEcCC
Confidence            999976633 344556678999999999999998864

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.74  E-value=0.0011  Score=69.80  Aligned_cols=206  Identities=12%  Similarity=0.098  Sum_probs=123.0

Q ss_pred             CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc---CC-CEEEEEECCCcEEEEecCCCeeeeee
Q 011126          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DG-QYLASGGEDGTVRVWKVIEHERLDGF  322 (493)
Q Consensus       247 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg-~~Lasgs~Dg~V~iWdl~~~~~~~~~  322 (493)
                      .-+||++...|+|.+||.......       ..++.|.++|..++|-+   +. ..|+.-..-.+|.+|+..+|+....+
T Consensus        79 ~lliAsaD~~GrIil~d~~~~s~~-------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~  151 (1062)
T KOG1912|consen   79 QLLIASADISGRIILVDFVLASVI-------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY  151 (1062)
T ss_pred             ceeEEeccccCcEEEEEehhhhhh-------hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence            346788888999999998754432       24677899999999987   33 35666666779999999999998888


Q ss_pred             eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc--eEEEcCCCceeecc--cceEEEecCCC---------
Q 011126          323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL--TCVVLPPKVFRLLE--KPLHEFQGHSS---------  389 (493)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~--~~~~~~~~h~~---------  389 (493)
                      ........|+.+.+.....+......+.-...........++  ..+.+...--.+..  ....+-..++.         
T Consensus       152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fit  231 (1062)
T KOG1912|consen  152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFIT  231 (1062)
T ss_pred             ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHH
Confidence            777776666666666555544443322111111000011111  11111000000000  00000000111         


Q ss_pred             CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCC--CEEEEEeCCCeEEEEeCCC
Q 011126          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD--NYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~--~~l~sgs~Dg~V~IWdl~~  460 (493)
                      ....++|+|.- .++-......+.|+|++-..++.+.. ..+.+.-+.|-| ++  ..|.++..||.+.||-.+.
T Consensus       232 y~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP-~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  232 YCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP-DPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             HHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEecc-CCCcceEEEEecCCeEEEEEeec
Confidence            01245678864 33334456779999999999998887 456666677777 54  4788999999999997654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.69  E-value=0.0079  Score=58.11  Aligned_cols=196  Identities=14%  Similarity=0.165  Sum_probs=103.6

Q ss_pred             ceeccCCCeEEee-----ecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-----------
Q 011126          241 ATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-----------  304 (493)
Q Consensus       241 ~~fsp~g~~lasg-----s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-----------  304 (493)
                      ..|+++|++|.+.     ...|.|-|||......      ...++..|.-.-..|.+.|||+.|+.+--           
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~------ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~  129 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR------RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRA  129 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE------EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCce
Confidence            6899999999884     4468999999873322      23355556555667899999988877521           


Q ss_pred             -------CCcEEEEecCCCeeeeeeeccC--CCCceEEEeeCCCCceeee-eccCccccceeeeecCCCceEEEcCCCc-
Q 011126          305 -------DGTVRVWKVIEHERLDGFDVQD--TDPSCLYFTINHLSQLIPI-DVDKEKIDKTKSLRKSSDLTCVVLPPKV-  373 (493)
Q Consensus       305 -------Dg~V~iWdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~-  373 (493)
                             +-.+..-|..+++.+.....+.  ...+.-.+.......+... .+.......        ...+..+.... 
T Consensus       130 kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~--------~PLva~~~~g~~  201 (305)
T PF07433_consen  130 KLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDA--------PPLVALHRRGGA  201 (305)
T ss_pred             ecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCcc--------CCeEEEEcCCCc
Confidence                   1223334445555544433311  1111111222222222211 111110000        00111111110 


Q ss_pred             eeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC
Q 011126          374 FRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG  451 (493)
Q Consensus       374 ~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg  451 (493)
                      +....-+......-.+.|-+|++++++  ..+|+=.-+.+.+||..+++.+...... .+..++-.+ ++ ++++.+ .|
T Consensus       202 ~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~-~~-f~~ssG-~G  277 (305)
T PF07433_consen  202 LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTD-DG-FLVSSG-QG  277 (305)
T ss_pred             ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-ceeeeeecC-Cc-eEEeCC-Cc
Confidence            000001111112235678899999998  4566668899999999999998877543 355666665 44 555544 44


Q ss_pred             eEE
Q 011126          452 KVR  454 (493)
Q Consensus       452 ~V~  454 (493)
                      .+.
T Consensus       278 ~~~  280 (305)
T PF07433_consen  278 QLI  280 (305)
T ss_pred             cEE
Confidence            433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=0.00045  Score=69.91  Aligned_cols=133  Identities=19%  Similarity=0.364  Sum_probs=95.2

Q ss_pred             EEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceE
Q 011126          287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC  366 (493)
Q Consensus       287 I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  366 (493)
                      =+-+.|||-|.||+|--.-| |.+|--.+...++.+                                            
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--------------------------------------------  247 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--------------------------------------------  247 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--------------------------------------------
Confidence            35689999999999988776 888954333222211                                            


Q ss_pred             EEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEe-----------CCCeEEEEECCCCcEEEEecC--CC-c-
Q 011126          367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-----------ADKTVRLWQVGIDRCLRVFSH--NN-Y-  430 (493)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs-----------~Dg~V~lWd~~~~~~~~~~~h--~~-~-  430 (493)
                                         .|. .|.-+.|||+. ||+|-+           ....++|||+.+|...+.|..  .. . 
T Consensus       248 -------------------~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~  307 (698)
T KOG2314|consen  248 -------------------YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLK  307 (698)
T ss_pred             -------------------cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccc
Confidence                               132 36677888887 777754           236799999999999988863  22 1 


Q ss_pred             EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecC-CCCCeEEEEEccCCCEEE
Q 011126          431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-IREIVSAVCYCPDGKVRQ  486 (493)
Q Consensus       431 V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~-~~~~I~sv~~spdG~~l~  486 (493)
                      -.-+.|+. |+.|+|-...| .|.||+...-.++.... -...|....|+|.+..||
T Consensus       308 WP~frWS~-DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  308 WPIFRWSH-DDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             cceEEecc-CCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence            22468898 99999987775 59999998866664332 235688899999998887

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.63  E-value=0.00036  Score=74.46  Aligned_cols=150  Identities=20%  Similarity=0.222  Sum_probs=95.8

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC---------CCcEEEE
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---------DGTVRVW  311 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---------Dg~V~iW  311 (493)
                      .-+..+++++.+|...|+|.+.|..       .+...+++.+|++.|.++..  .|+.|++||.         |..|+||
T Consensus       181 ~imR~Nnr~lf~G~t~G~V~LrD~~-------s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVY  251 (1118)
T KOG1275|consen  181 TIMRYNNRNLFCGDTRGTVFLRDPN-------SFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVY  251 (1118)
T ss_pred             EEEEecCcEEEeecccceEEeecCC-------cCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhh
Confidence            3456678999999999999999976       44566789999999987766  5889999986         5568999


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      |++..+.+.-+..+..+ ..+.|.+.-...+               +..+..+.+-..+...+.-..--+..+......+
T Consensus       252 DLRmmral~PI~~~~~P-~flrf~Psl~t~~---------------~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i  315 (1118)
T KOG1275|consen  252 DLRMMRALSPIQFPYGP-QFLRFHPSLTTRL---------------AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGI  315 (1118)
T ss_pred             hhhhhhccCCcccccCc-hhhhhcccccceE---------------EEEecccceeeccccccCCCccceeEEccCCCcc
Confidence            99887766555544332 1122222111111               1112222222222111111001122233345569


Q ss_pred             eEEEEeCCC-eEEEEeCCCeEEEEE
Q 011126          392 LDLSWSKNG-FLLSSSADKTVRLWQ  415 (493)
Q Consensus       392 ~~l~~sp~g-~l~sgs~Dg~V~lWd  415 (493)
                      ..+.+++++ .++.|..+|.|.+|-
T Consensus       316 ~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  316 SAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeEEecCCCceEEEecccCcEeeec
Confidence            999999999 999999999999997

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.60  E-value=0.019  Score=58.42  Aligned_cols=88  Identities=13%  Similarity=0.031  Sum_probs=57.0

Q ss_pred             CeEEEEeCCCeEEEEECCCCcEEEEec-CC-CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe-cCCCCCeEEE
Q 011126          400 GFLLSSSADKTVRLWQVGIDRCLRVFS-HN-NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIREIVSAV  476 (493)
Q Consensus       400 g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~-~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~-~~~~~~I~sv  476 (493)
                      +.++.++.++.|..+|..+++.+.... .. ....+...   .+.+|++++.+|.|+++|..+++++.. ..+...+.+-
T Consensus       280 ~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~s  356 (377)
T TIGR03300       280 NRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASP  356 (377)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccC
Confidence            377778899999999999998776553 11 12222222   456889999999999999999998853 3333333333


Q ss_pred             EEccCCCEEEEeecC
Q 011126          477 CYCPDGKVRQNSACN  491 (493)
Q Consensus       477 ~~spdG~~l~s~s~d  491 (493)
                      -.-.+++ |++++.|
T Consensus       357 p~~~~~~-l~v~~~d  370 (377)
T TIGR03300       357 PVVVGDG-LLVQTRD  370 (377)
T ss_pred             CEEECCE-EEEEeCC
Confidence            2233444 4455444

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.59  E-value=7e-05  Score=79.31  Aligned_cols=236  Identities=14%  Similarity=0.186  Sum_probs=138.1

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC--cEEE
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TVRV  310 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--~V~i  310 (493)
                      .+...-++++|+-+.++|++|+..|.|+++++..+..+-+       ..+|..+|+-+.-+.+|..+++.+.-.  -..+
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s-------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES-------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc-------ccccccccccccccCCcceeeeeccccCchHHH
Confidence            3444556799999999999999999999999987765443       578999999999999999776655433  4678


Q ss_pred             EecCC-CeeeeeeeccCCCCceEEEeeCCC--------CceeeeeccCccc------------cceeeeecCCCceEEEc
Q 011126          311 WKVIE-HERLDGFDVQDTDPSCLYFTINHL--------SQLIPIDVDKEKI------------DKTKSLRKSSDLTCVVL  369 (493)
Q Consensus       311 Wdl~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~------------~~~~~~~~s~~~~~~~~  369 (493)
                      |++.+ +.....+..    -.++.|+....        .....++......            +......-+..-.+++|
T Consensus      1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred             hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence            99854 233333322    12222222111        1111222211111            11122333444455555


Q ss_pred             CCCceeecc-cceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE
Q 011126          370 PPKVFRLLE-KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG  447 (493)
Q Consensus       370 ~~~~~~~~~-~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg  447 (493)
                      +--.|+... ..++.|..-+.. ..=.|+|+| .++.-+.     |||+++.+.++....-+ -..|.|+. .|+.++..
T Consensus      1248 dGvLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld-qc~VtFNs-tG~VmYa~ 1319 (1516)
T KOG1832|consen 1248 DGVLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD-QCAVTFNS-TGDVMYAM 1319 (1516)
T ss_pred             CceeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc-ceEEEecc-Cccchhhh
Confidence            555554432 234444333321 123589998 6666554     99999988777654222 24577777 66655443


Q ss_pred             eC------C-----------CeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEE
Q 011126          448 SI------D-----------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQN  487 (493)
Q Consensus       448 s~------D-----------g~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s  487 (493)
                      -.      |           ...|-+|..+...+........|..+|-.|...++.+
T Consensus      1320 ~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~v 1376 (1516)
T KOG1832|consen 1320 LNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGV 1376 (1516)
T ss_pred             hhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEE
Confidence            20      0           1244555555555555566667888888888777754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.58  E-value=0.012  Score=56.04  Aligned_cols=97  Identities=18%  Similarity=0.240  Sum_probs=68.0

Q ss_pred             EeEEEEe-CCCeEEEEeCCCeEEEEECCCCcEEEEec------CCCcEEEEEEccCCCCEEEEEeCC--------CeEEE
Q 011126          391 VLDLSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSID--------GKVRI  455 (493)
Q Consensus       391 V~~l~~s-p~g~l~sgs~Dg~V~lWd~~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~D--------g~V~I  455 (493)
                      ...+++. +++.|+.+...+ +.++|..+++......      .....+.+++.| +|++.++....        |.|..
T Consensus        42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence            5677777 667666666655 4555998886554443      346788999999 99988877654        66888


Q ss_pred             EeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          456 WEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       456 Wdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ++.. +++......-...+.|+|+|||+.|+++..
T Consensus       120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen  120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred             ECCC-CeEEEEecCcccccceEECCcchheeeccc
Confidence            8888 665554444567899999999998876543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.00031  Score=68.49  Aligned_cols=82  Identities=16%  Similarity=0.266  Sum_probs=72.4

Q ss_pred             eEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126          381 LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       381 ~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl  458 (493)
                      ..-+.+|...|.+|+|+|.+  ++..++.+.+|+|.|+++..++..+.....+++++|.-.+.++|..|-..|.|.|||+
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            34466788999999999976  8999999999999999999999998866999999999867778889999999999999


Q ss_pred             CCCe
Q 011126          459 RRCQ  462 (493)
Q Consensus       459 ~~~~  462 (493)
                      +..+
T Consensus       266 R~~~  269 (463)
T KOG1645|consen  266 RQPE  269 (463)
T ss_pred             cCCC
Confidence            8653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.42  E-value=0.0067  Score=67.09  Aligned_cols=228  Identities=12%  Similarity=0.162  Sum_probs=128.5

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~  315 (493)
                      +.+.++.|..++..++.+...|.|.+-|......++.        ..-...|.+++|+||++.++.....+++.+-. .+
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~  139 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--------GNVDNGISAASWSPDEELLALITGRQTLLFMT-KD  139 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeee--------eeccCceEEEeecCCCcEEEEEeCCcEEEEEe-cc
Confidence            5666788999999999999999999997665443322        22467899999999999998888877776543 22


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      ...+........        ....+....+++....    ..+.++......    +.....++......-| ..=+.|+
T Consensus       140 f~~i~E~~L~~d--------~~~~sk~v~VGwGrke----Tqfrgs~gr~~~----~~~~~~ek~~~~~~~~-~~~~~Is  202 (1265)
T KOG1920|consen  140 FEPIAEKPLDAD--------DERKSKFVNVGWGRKE----TQFRGSEGRQAA----RQKIEKEKALEQIEQD-DHKTSIS  202 (1265)
T ss_pred             ccchhccccccc--------cccccccceecccccc----eeeecchhhhcc----cccccccccccchhhc-cCCceEE
Confidence            222221111000        0000111111111110    001111000000    0000000101111112 2234689


Q ss_pred             EeCCC-eEEEEe----CC-CeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEe---CCCeEEEEeCCCCe---
Q 011126          396 WSKNG-FLLSSS----AD-KTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQ---  462 (493)
Q Consensus       396 ~sp~g-~l~sgs----~D-g~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs---~Dg~V~IWdl~~~~---  462 (493)
                      |--+| ++++..    .+ +.|+|||-. +..-.+- ....--.+++|-| .|.++++-.   .|+.|.++.-+.-+   
T Consensus       203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~  280 (1265)
T KOG1920|consen  203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGE  280 (1265)
T ss_pred             EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccc
Confidence            99999 777632    33 899999976 3222111 1334446899999 899888753   45679999866432   


Q ss_pred             EE-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          463 VV-DYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       463 ~~-~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      .. .+......|..++|+.++..|++-.+.
T Consensus       281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~  310 (1265)
T KOG1920|consen  281 FVLPFPLDEKEVEELAWNSNSDILAVVTSN  310 (1265)
T ss_pred             cccCCcccccchheeeecCCCCceeeeecc
Confidence            22 233334449999999999999885543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.40  E-value=4.2e-05  Score=78.49  Aligned_cols=178  Identities=17%  Similarity=0.358  Sum_probs=116.7

Q ss_pred             CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEE----CCCcEEEEecCCCeeee
Q 011126          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGG----EDGTVRVWKVIEHERLD  320 (493)
Q Consensus       246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs----~Dg~V~iWdl~~~~~~~  320 (493)
                      +...+++|..+|.|-+-.++.....     ......+|...+++++|++ |...||.|-    .|..+.|||+.++-.  
T Consensus        69 d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt--  141 (783)
T KOG1008|consen   69 DRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT--  141 (783)
T ss_pred             chhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccC--
Confidence            3467889999999999887754322     1223467888999999998 666777763    356799999876521  


Q ss_pred             eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC
Q 011126          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG  400 (493)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  400 (493)
                         .+..   ...|                                               .  .+-......++|-.+.
T Consensus       142 ---vPke---~~~f-----------------------------------------------s--~~~l~gqns~cwlrd~  166 (783)
T KOG1008|consen  142 ---VPKE---SPLF-----------------------------------------------S--SSTLDGQNSVCWLRDT  166 (783)
T ss_pred             ---CCcc---cccc-----------------------------------------------c--cccccCccccccccCc
Confidence               0000   0000                                               0  0012233478888666


Q ss_pred             -eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC-CCCe-EEE-----ecCCCCC
Q 011126          401 -FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-RRCQ-VVD-----YTDIREI  472 (493)
Q Consensus       401 -~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl-~~~~-~~~-----~~~~~~~  472 (493)
                       ++++|...+.++++|++........-.+..+..+...|..++|+++-. ||.|.+||. ++-+ ++.     .......
T Consensus       167 klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~  245 (783)
T KOG1008|consen  167 KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQ  245 (783)
T ss_pred             chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccc
Confidence             888888888999999984333222225567888899998889998876 999999994 3322 111     1222345


Q ss_pred             eEEEEEccCCCEEE
Q 011126          473 VSAVCYCPDGKVRQ  486 (493)
Q Consensus       473 I~sv~~spdG~~l~  486 (493)
                      +..++|.|....++
T Consensus       246 l~~~aycPtrtgll  259 (783)
T KOG1008|consen  246 LFALAYCPTRTGLL  259 (783)
T ss_pred             eeeEEeccCCcchh
Confidence            99999999765543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.38  E-value=0.002  Score=68.36  Aligned_cols=70  Identities=21%  Similarity=0.319  Sum_probs=59.0

Q ss_pred             ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~  315 (493)
                      .+++|||..-.|+.|...|.+.||........  +     ....|+.+|..+.||++|..|+++..-|.|.+|....
T Consensus        63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h--t-----v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   63 TSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH--T-----VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             hhhccChHHHHHhhccccceeEEEecCCceee--e-----eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            34899999999999999999999987644321  1     2245999999999999999999999999999998763

>smart00320 WD40 WD40 repeats

Probab=97.37  E-value=0.0004  Score=43.63  Aligned_cols=35  Identities=40%  Similarity=0.904  Sum_probs=31.7

Q ss_pred             eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd  312 (493)
                      ..+.+|...|+++.|.+++.++++++.|+.+++|+
T Consensus         6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34667999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.30  E-value=0.0078  Score=62.12  Aligned_cols=34  Identities=18%  Similarity=0.339  Sum_probs=22.0

Q ss_pred             eeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126          279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl  313 (493)
                      .+....-....|.++|+|++++.++ ||...|+..
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~   60 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTA   60 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEET
T ss_pred             cCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEc
Confidence            3444455678999999999998854 677777763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.0014  Score=67.60  Aligned_cols=91  Identities=14%  Similarity=0.269  Sum_probs=76.5

Q ss_pred             CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEE-EEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT-SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~-~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      ...|.-+.|+|.- ++|++..+|.|.++.+. .+.+.++. |+..++ +++|.| ||++||.|-.||+|++-|+.++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence            3467788999987 99999999999999998 67777777 777777 999999 9999999999999999999998776


Q ss_pred             Ee--cCCCCCeEEEEEcc
Q 011126          465 DY--TDIREIVSAVCYCP  480 (493)
Q Consensus       465 ~~--~~~~~~I~sv~~sp  480 (493)
                      .-  ......|+.+-|.|
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            43  44556677777763

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.19  E-value=0.003  Score=66.02  Aligned_cols=116  Identities=21%  Similarity=0.210  Sum_probs=85.9

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  320 (493)
                      -+++..+++++.|+.-|.+.+|+...+.....      ...+-.+.+..+..+++..++|.|+..|.|.|+.+.....  
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p--  110 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL------KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP--  110 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhcc------cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC--
Confidence            45778899999999999999999875543221      1223456677788899998999999999999998865321  


Q ss_pred             eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC
Q 011126          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG  400 (493)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  400 (493)
                              ...+++++.                                              -..|...|++++|++++
T Consensus       111 --------~~~~~~t~~----------------------------------------------d~~~~~rVTal~Ws~~~  136 (726)
T KOG3621|consen  111 --------RDLDYVTPC----------------------------------------------DKSHKCRVTALEWSKNG  136 (726)
T ss_pred             --------Ccceeeccc----------------------------------------------cccCCceEEEEEecccc
Confidence                    111111110                                              02288999999999999


Q ss_pred             -eEEEEeCCCeEEEEECCC
Q 011126          401 -FLLSSSADKTVRLWQVGI  418 (493)
Q Consensus       401 -~l~sgs~Dg~V~lWd~~~  418 (493)
                       .+++|..-|+|.+-.+.+
T Consensus       137 ~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  137 MKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cEEeecCCCceEEEEEech
Confidence             999999999999988876

>smart00320 WD40 WD40 repeats

Probab=97.18  E-value=0.0012  Score=41.26  Aligned_cols=36  Identities=44%  Similarity=0.862  Sum_probs=30.9

Q ss_pred             EEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126          421 CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (493)
Q Consensus       421 ~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd  457 (493)
                      ++..+. |...|+++.|+| .+.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            444444 788999999999 889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.13  E-value=0.038  Score=58.41  Aligned_cols=102  Identities=16%  Similarity=0.115  Sum_probs=72.9

Q ss_pred             CCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcE------------EEEecCCCcEEEEEEccCCCCEEEEEeCCCe
Q 011126          387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC------------LRVFSHNNYVTSVAFNPVDDNYFISGSIDGK  452 (493)
Q Consensus       387 h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~------------~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~  452 (493)
                      -......++++|+|  .++++..+.+|.|.|+.+.+.            .....-.......+|.+ +|+.+.|--.|..
T Consensus       319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytslf~dsq  397 (635)
T PRK02888        319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTLFLDSQ  397 (635)
T ss_pred             CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeEeecce
Confidence            34556789999999  556667799999999987542            34444445556789999 8899999999999


Q ss_pred             EEEEeCCC----------CeEEEecCCCCCeEEEE------EccCCCEEEEee
Q 011126          453 VRIWEVRR----------CQVVDYTDIREIVSAVC------YCPDGKVRQNSA  489 (493)
Q Consensus       453 V~IWdl~~----------~~~~~~~~~~~~I~sv~------~spdG~~l~s~s  489 (493)
                      |..||+.+          ..++...+....+-.+.      -.|||++|++..
T Consensus       398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            99999986          34554333333333333      379999998764

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0051  Score=61.04  Aligned_cols=164  Identities=18%  Similarity=0.252  Sum_probs=111.6

Q ss_pred             eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceE
Q 011126          253 GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCL  332 (493)
Q Consensus       253 gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~  332 (493)
                      .-.++.|.|+|-.....+...     .-.-|..+|.++.++|-+..+++....|.|.-|....     .++.+..   .+
T Consensus       118 ~~~sg~i~VvD~~~d~~q~~~-----fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-----~~qfPr~---~l  184 (558)
T KOG0882|consen  118 LFKSGKIFVVDGFGDFCQDGY-----FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-----PFQFPRT---NL  184 (558)
T ss_pred             cccCCCcEEECCcCCcCccce-----ecccccCceEEEEeeccccceeeccccceeEeecCCC-----cccCccc---cc
Confidence            346788999987654433221     1245999999999999999999999999999998753     1111110   01


Q ss_pred             EEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeE
Q 011126          333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTV  411 (493)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V  411 (493)
                      .|...+                                       +.-+..+........++.|+|++ .+.+-+.|..|
T Consensus       185 ~~~~K~---------------------------------------eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkV  225 (558)
T KOG0882|consen  185 NFELKH---------------------------------------ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKV  225 (558)
T ss_pred             cccccc---------------------------------------cchhhcccccccCccceEEccccCcccccCcccEE
Confidence            111110                                       01122233345677899999999 89888999999


Q ss_pred             EEEECCCCcEEEEec---------------------------------CC-CcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126          412 RLWQVGIDRCLRVFS---------------------------------HN-NYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (493)
Q Consensus       412 ~lWd~~~~~~~~~~~---------------------------------h~-~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd  457 (493)
                      +++++++++.++.+.                                 |. ..-+.+.|.. .+++|+-|+.=| |+|.+
T Consensus       226 R~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~g-ikvin  303 (558)
T KOG0882|consen  226 RGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTILG-IKVIN  303 (558)
T ss_pred             EEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeeccee-EEEEE
Confidence            999999887654432                                 11 1235678887 899999988777 99999


Q ss_pred             CCCCeEEEecCCC
Q 011126          458 VRRCQVVDYTDIR  470 (493)
Q Consensus       458 l~~~~~~~~~~~~  470 (493)
                      +.++.++...+-.
T Consensus       304 ~~tn~v~ri~gk~  316 (558)
T KOG0882|consen  304 LDTNTVVRILGKD  316 (558)
T ss_pred             eecCeEEEEeccc
Confidence            9999887654433

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.10  E-value=0.053  Score=44.15  Aligned_cols=66  Identities=27%  Similarity=0.337  Sum_probs=46.2

Q ss_pred             CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCC---CEEEEEeCCCeEEE
Q 011126          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD---NYFISGSIDGKVRI  455 (493)
Q Consensus       388 ~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~---~~l~sgs~Dg~V~I  455 (493)
                      ...|+.|+-...+.++.+-.+|+|-+|+-.  ..+...+....++++++...++   .-|++|-.+|+|-+
T Consensus        42 ~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   42 TDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            456777777777789999999999999752  2333334455588888765232   26889988998753

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.06  E-value=0.36  Score=48.96  Aligned_cols=62  Identities=23%  Similarity=0.200  Sum_probs=46.6

Q ss_pred             CeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126          400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       400 g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                      +.++.++.++.+..||..+++.+........ .....   .+..++.++.||.|+.+|..+++.+.
T Consensus       242 ~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~---~~~~vyv~~~~G~l~~~d~~tG~~~W  303 (377)
T TIGR03300       242 GQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAV---DDNRLYVTDADGVVVALDRRSGSELW  303 (377)
T ss_pred             CEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceE---eCCEEEEECCCCeEEEEECCCCcEEE
Confidence            4777788899999999999987766653221 12222   45678888899999999999998763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.03  E-value=0.011  Score=61.11  Aligned_cols=160  Identities=15%  Similarity=0.148  Sum_probs=87.7

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~  317 (493)
                      ...+.++|+|+++++ ..+|.-.|+......            ....+.-....|.+.+ .+|+-....+|.|+.--+..
T Consensus        35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r------------~k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWR------------NKAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             -SEEEE-TTSSEEEE-EETTEEEEEETTTTE------------EEEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred             CeeEEECCCCCEEEE-EcCCEEEEEEccCCc------------ccccCceeEEEEecCc-cEEEEECCCeEEEEEcCccc
Confidence            455899999999999 577888888732111            0123445568898855 46666668889996321111


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (493)
                      ....+..                                                               ...+..|-. 
T Consensus       101 ~~k~i~~---------------------------------------------------------------~~~~~~If~-  116 (443)
T PF04053_consen  101 VVKSIKL---------------------------------------------------------------PFSVEKIFG-  116 (443)
T ss_dssp             TT--------------------------------------------------------------------SS-EEEEE--
T ss_pred             cceEEcC---------------------------------------------------------------CcccceEEc-
Confidence            1001100                                                               011222211 


Q ss_pred             CCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC------------eEE
Q 011126          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC------------QVV  464 (493)
Q Consensus       398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~------------~~~  464 (493)
                        | +|+..+ ++.|.+||+.+++.++.+.... |..|.|++ ++++++..+.+ .+.|++....            ...
T Consensus       117 --G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~  190 (443)
T PF04053_consen  117 --GNLLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFE  190 (443)
T ss_dssp             --SSSEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEE
T ss_pred             --CcEEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceE
Confidence              6 444444 4489999999999999998664 89999999 89999888755 6888876644            333


Q ss_pred             EecCCCCCeEEEEEccC
Q 011126          465 DYTDIREIVSAVCYCPD  481 (493)
Q Consensus       465 ~~~~~~~~I~sv~~spd  481 (493)
                      ........|.+.+|.-|
T Consensus       191 ~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  191 LIHEISERIKSGCWVED  207 (443)
T ss_dssp             EEEEE-S--SEEEEETT
T ss_pred             EEEEecceeEEEEEEcC
Confidence            34444567777888766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.03  E-value=0.03  Score=62.17  Aligned_cols=209  Identities=15%  Similarity=0.187  Sum_probs=109.6

Q ss_pred             eecccccceeccCCCeEEeeecCCeEEEEECCC----cccc----------cccccc--ceeeecc--------------
Q 011126          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK----QSRE----------LSSLYT--GQEFLAH--------------  283 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~----~~~~----------~~~~~~--~~~l~~H--------------  283 (493)
                      ..+.|.+++|+||+..++..+..+++.+-...=    .+..          ..-.+.  ...|.|.              
T Consensus       108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek  187 (1265)
T KOG1920|consen  108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK  187 (1265)
T ss_pred             ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence            346677799999999999999888887754310    0000          000000  0011111              


Q ss_pred             -------cCCEEEEEEccCCCEEEEEE----CC-CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcc
Q 011126          284 -------EGSILTMKFSLDGQYLASGG----ED-GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK  351 (493)
Q Consensus       284 -------~~~I~~l~fspdg~~Lasgs----~D-g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (493)
                             .+.=+.|.|--||+++|+..    .+ ..|+|||-. +..-..-........++.|.|.+. .+..+      
T Consensus       188 ~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs-~iA~i------  259 (1265)
T KOG1920|consen  188 ALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS-LIAAI------  259 (1265)
T ss_pred             cccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCC-eEeee------
Confidence                   11123589999999998832    23 789999965 332222222222334455555221 11111      


Q ss_pred             ccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEE---EeCCCeEEEEECCCCcEEE--Ee
Q 011126          352 IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS---SSADKTVRLWQVGIDRCLR--VF  425 (493)
Q Consensus       352 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~s---gs~Dg~V~lWd~~~~~~~~--~~  425 (493)
                            -...++..++++......-. .....+......|..|+|+.++ .|+.   ......|++|-+.+..-..  .+
T Consensus       260 ------q~~~sd~~IvffErNGL~hg-~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l  332 (1265)
T KOG1920|consen  260 ------QCKTSDSDIVFFERNGLRHG-EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQEL  332 (1265)
T ss_pred             ------eecCCCCcEEEEecCCcccc-ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEE
Confidence                  11222334444443322111 0111122233448999999998 6665   4455559999988754322  22


Q ss_pred             cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126          426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       426 ~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl  458 (493)
                      ....... +.|+|.....|..-..+|.+.++++
T Consensus       333 ~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  333 QFSQKAL-LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             ecccccc-ccccCCCceeEEEEecCCcEEEEEE
Confidence            2222222 8888866666666556776666554

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.0032  Score=65.08  Aligned_cols=91  Identities=21%  Similarity=0.288  Sum_probs=74.3

Q ss_pred             CCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc
Q 011126          285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (493)
Q Consensus       285 ~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  364 (493)
                      ..|.-+.|+|.-.+||++..+|.|-+..+. .+.+.++                                          
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti------------------------------------------   57 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI------------------------------------------   57 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEec------------------------------------------
Confidence            458889999999999999999999999875 4433322                                          


Q ss_pred             eEEEcCCCceeecccceEEEecCCCCEe-EEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEE--ecCCCcEEEEEEcc
Q 011126          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVL-DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV--FSHNNYVTSVAFNP  438 (493)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~--~~h~~~V~~v~fsp  438 (493)
                                          .-|...++ +++|.|+| .|+.|-.||+|++.|+.++..+..  +.....|.++.|.|
T Consensus        58 --------------------p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   58 --------------------PIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             --------------------cCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence                                22344455 99999999 999999999999999999998888  55778899999975

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.03  E-value=0.17  Score=50.99  Aligned_cols=97  Identities=16%  Similarity=0.182  Sum_probs=59.4

Q ss_pred             EEEEe-CCC--eEEEEeCCCeEEEE--ECCCCcEEEEec-CCCcEEE-EEEccCCCCEEEEEeCC----CeEEEEeCC-C
Q 011126          393 DLSWS-KNG--FLLSSSADKTVRLW--QVGIDRCLRVFS-HNNYVTS-VAFNPVDDNYFISGSID----GKVRIWEVR-R  460 (493)
Q Consensus       393 ~l~~s-p~g--~l~sgs~Dg~V~lW--d~~~~~~~~~~~-h~~~V~~-v~fsp~d~~~l~sgs~D----g~V~IWdl~-~  460 (493)
                      .+.|. +++  +|.....||.-+||  +...+.. +.+. ..-.|+. +.|++..+.++.++..+    ..|+.-++. .
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~  317 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG  317 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence            55554 655  66666688776655  4444443 3443 4445644 67788334444566553    367777888 7


Q ss_pred             CeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          461 CQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       461 ~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      +.+..+......-..+.|+|+|++++...+
T Consensus       318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  318 GEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            777776655544479999999999886654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.01  E-value=0.058  Score=43.91  Aligned_cols=94  Identities=18%  Similarity=0.204  Sum_probs=65.0

Q ss_pred             EeEEEEeC---CC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126          391 VLDLSWSK---NG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       391 V~~l~~sp---~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                      |++|++..   +|  .|+.|+.|..||+|+-  ...+..+.-.+.|++++-..  +..|+.+-.+|+|-+|+-..... .
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~RlW-R   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQRLW-R   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcceee-e
Confidence            55666554   44  8999999999999984  47788888888899998876  47799999999999997633222 2


Q ss_pred             ecCCCCCeEEEEE-ccCC--C-EEEEeec
Q 011126          466 YTDIREIVSAVCY-CPDG--K-VRQNSAC  490 (493)
Q Consensus       466 ~~~~~~~I~sv~~-spdG--~-~l~s~s~  490 (493)
                       .+.+..++++++ ..+|  . -|++|-+
T Consensus        77 -iKSK~~~~~~~~~D~~gdG~~eLI~Gws  104 (111)
T PF14783_consen   77 -IKSKNQVTSMAFYDINGDGVPELIVGWS  104 (111)
T ss_pred             -eccCCCeEEEEEEcCCCCCceEEEEEec
Confidence             223334566654 3333  2 4555543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.00  E-value=0.0058  Score=63.97  Aligned_cols=135  Identities=19%  Similarity=0.190  Sum_probs=96.0

Q ss_pred             ccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCC
Q 011126          283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS  362 (493)
Q Consensus       283 H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  362 (493)
                      |...|.--+++..+++|+.|+.-|.|++|+-..+....                                          
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~------------------------------------------   69 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK------------------------------------------   69 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc------------------------------------------
Confidence            44556666777789999999999999999865443211                                          


Q ss_pred             CceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEE--EEe-----cCCCcEEEE
Q 011126          363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--RVF-----SHNNYVTSV  434 (493)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~--~~~-----~h~~~V~~v  434 (493)
                                         ....+..+.+..+..+++. ++|.|+..|.|.++.+....+-  ..+     .|...|+|+
T Consensus        70 -------------------~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal  130 (726)
T KOG3621|consen   70 -------------------LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTAL  130 (726)
T ss_pred             -------------------ccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEE
Confidence                               1112234456667778877 8888889999999988754321  111     278999999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEeCCCCe-----EEEecCCCCCeEEEEEc
Q 011126          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQ-----VVDYTDIREIVSAVCYC  479 (493)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~V~IWdl~~~~-----~~~~~~~~~~I~sv~~s  479 (493)
                      +|++ ++..|.+|...|+|..-.+....     ...+......|-.+.+.
T Consensus       131 ~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  131 EWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             Eecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            9999 99999999999999999888732     22344455667666554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.95  E-value=0.13  Score=48.11  Aligned_cols=166  Identities=13%  Similarity=0.105  Sum_probs=89.7

Q ss_pred             CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126          295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (493)
Q Consensus       295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (493)
                      ++.++++++.++.|..||..+|+.+..+.......... ...  ...++.               ...++.+..++....
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~--~~~v~v---------------~~~~~~l~~~d~~tG   96 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVD--GGRVYV---------------GTSDGSLYALDAKTG   96 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEE--TTEEEE---------------EETTSEEEEEETTTS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eec--cccccc---------------ccceeeeEecccCCc
Confidence            56678888999999999999999888777633211111 100  011111               112223333332221


Q ss_pred             eecccceEEE-ecC----C-CCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCC-c----------E-EEEEE
Q 011126          375 RLLEKPLHEF-QGH----S-SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNN-Y----------V-TSVAF  436 (493)
Q Consensus       375 ~~~~~~~~~~-~~h----~-~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~-~----------V-~~v~f  436 (493)
                      ..    +... ...    . .......+. ++.++.+..++.|..+|+++++.+....-.. .          + ..+.+
T Consensus        97 ~~----~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  171 (238)
T PF13360_consen   97 KV----LWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI  171 (238)
T ss_dssp             CE----EEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC
T ss_pred             ce----eeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE
Confidence            11    2221 111    1 111222232 3378888889999999999999987775211 1          1 23333


Q ss_pred             ccCCCCEEEEEeCCCe-EEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126          437 NPVDDNYFISGSIDGK-VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       437 sp~d~~~l~sgs~Dg~-V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .  ++ .+..++.++. +.+ |+.+++.+ |......+..+ ..+++..|++++
T Consensus       172 ~--~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~~~~~~~~-~~~~~~~l~~~~  219 (238)
T PF13360_consen  172 S--DG-RVYVSSGDGRVVAV-DLATGEKL-WSKPISGIYSL-PSVDGGTLYVTS  219 (238)
T ss_dssp             C--TT-EEEEECCTSSEEEE-ETTTTEEE-EEECSS-ECEC-EECCCTEEEEEE
T ss_pred             E--CC-EEEEEcCCCeEEEE-ECCCCCEE-EEecCCCccCC-ceeeCCEEEEEe
Confidence            2  34 6777777775 555 99999977 33223333332 446666666665

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.94  E-value=0.23  Score=46.45  Aligned_cols=161  Identities=16%  Similarity=0.098  Sum_probs=91.0

Q ss_pred             CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (493)
Q Consensus       246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~  325 (493)
                      .+..++++..++.|..+|..+....-......  ..... ....+....++..++.+..++.|..+|+.+|+.+......
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~  151 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS--SPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG  151 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-S--SCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred             cccccccccceeeeEecccCCcceeeeecccc--ccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence            44456666677888888876655322200000  00001 1122233334788888888999999999999987776553


Q ss_pred             CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEE
Q 011126          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS  405 (493)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sg  405 (493)
                      .......                                                +.    ....+..-....++.++.+
T Consensus       152 ~~~~~~~------------------------------------------------~~----~~~~~~~~~~~~~~~v~~~  179 (238)
T PF13360_consen  152 EPRGSSP------------------------------------------------IS----SFSDINGSPVISDGRVYVS  179 (238)
T ss_dssp             TT-SS--------------------------------------------------EE----EETTEEEEEECCTTEEEEE
T ss_pred             CCCCCcc------------------------------------------------ee----eecccccceEEECCEEEEE
Confidence            2210000                                                00    0011111111223466666


Q ss_pred             eCCCe-EEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126          406 SADKT-VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       406 s~Dg~-V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                      +.++. +.+ |+.+++.+.... ...+..+ ..+ .+..|+.++.++.|..||+++++.+.
T Consensus       180 ~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~-~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  180 SGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSV-DGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             CCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EEC-CCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             cCCCeEEEE-ECCCCCEEEEec-CCCccCC-cee-eCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            66664 556 999998664333 2333331 234 67788888899999999999998863

...

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.93  E-value=0.052  Score=57.46  Aligned_cols=94  Identities=16%  Similarity=0.126  Sum_probs=66.1

Q ss_pred             EeCCC-eE-EEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe-------------------------
Q 011126          396 WSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-------------------------  448 (493)
Q Consensus       396 ~sp~g-~l-~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-------------------------  448 (493)
                      +.|+| .+ .+.-..+.+.+.|..+.+...++.-......++++| ++.++.+.+                         
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            44555 22 233445677788888777766665444555677777 677666554                         


Q ss_pred             ---------------CCCeEEEEeCCC-----CeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          449 ---------------IDGKVRIWEVRR-----CQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       449 ---------------~Dg~V~IWdl~~-----~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                                     .+++|.+.|..+     .+++.+.........+.++|||+++++++.
T Consensus       279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank  340 (635)
T PRK02888        279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK  340 (635)
T ss_pred             HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC
Confidence                           235688888887     466777778888999999999999998864

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.87  E-value=0.44  Score=49.02  Aligned_cols=81  Identities=10%  Similarity=0.150  Sum_probs=50.0

Q ss_pred             eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCCCCeEEEEE
Q 011126          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCY  478 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~~~~I~sv~~  478 (493)
                      ..+....++.+.+-+-.....   +...+++..|++|| +++++|.-..+|++.|....-.+.+..  .+.......+.|
T Consensus       192 ~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~W  267 (410)
T PF04841_consen  192 VEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAW  267 (410)
T ss_pred             eEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEE
Confidence            444444455566433222111   33346899999999 999999999999999998765544422  222345566677


Q ss_pred             ccCCCEE
Q 011126          479 CPDGKVR  485 (493)
Q Consensus       479 spdG~~l  485 (493)
                      .-+...+
T Consensus       268 CG~dav~  274 (410)
T PF04841_consen  268 CGNDAVV  274 (410)
T ss_pred             ECCCcEE
Confidence            6654433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.85  E-value=0.13  Score=48.81  Aligned_cols=220  Identities=17%  Similarity=0.248  Sum_probs=122.1

Q ss_pred             cceeccCCC-eEEeeecCCeE-EEEECCCcccccc-ccccceeeecccCCEEEEEEccCCCEEEEEECC-----CcEEEE
Q 011126          240 SATLKPGDH-ELTLGQRMRRV-RVHPVKKQSRELS-SLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-----GTVRVW  311 (493)
Q Consensus       240 ~~~fsp~g~-~lasgs~dg~V-~vwd~~~~~~~~~-~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-----g~V~iW  311 (493)
                      .++|+|.-. -++.+-+-|+. .++|......... .......|.+|.      .|+|||.+|+..-.|     |.|-||
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvY  145 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVY  145 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEE
Confidence            377887654 45556667764 6777765543221 122334567775      799999999875433     789999


Q ss_pred             ecCCC-eeeeeeeccCCCCceEEEeeCCCCceeeee-ccCc-cccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          312 KVIEH-ERLDGFDVQDTDPSCLYFTINHLSQLIPID-VDKE-KIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       312 dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      |...+ +.+..+..+...+..+.+..++...+.... .... .......--.+....+++.+....++.+|....-..+.
T Consensus       146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~  225 (366)
T COG3490         146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ  225 (366)
T ss_pred             ecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence            98754 456667777777777777666644333221 0000 01111111122233344444333333333222222455


Q ss_pred             CCEeEEEEeCCCeEEEEe-CCC-----eEEEEECCCCcEEEEec--------CCCcEEEEEEccCCCCEEE-EEeCCCeE
Q 011126          389 SEVLDLSWSKNGFLLSSS-ADK-----TVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFI-SGSIDGKV  453 (493)
Q Consensus       389 ~~V~~l~~sp~g~l~sgs-~Dg-----~V~lWd~~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~-sgs~Dg~V  453 (493)
                      ..|..++..++|.+..++ ..|     --.|=....++.+..+.        ..++|-+|+.+- +..+++ |.=..+..
T Consensus       226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~-~~glV~lTSP~GN~~  304 (366)
T COG3490         226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR-RDGLVALTSPRGNRA  304 (366)
T ss_pred             cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc-cCCeEEEecCCCCeE
Confidence            667788888888333332 111     11121223344444442        457899999998 445544 44455678


Q ss_pred             EEEeCCCCeEEEe
Q 011126          454 RIWEVRRCQVVDY  466 (493)
Q Consensus       454 ~IWdl~~~~~~~~  466 (493)
                      .|||..++.++..
T Consensus       305 vi~da~tG~vv~~  317 (366)
T COG3490         305 VIWDAATGAVVSE  317 (366)
T ss_pred             EEEEcCCCcEEec
Confidence            9999999998853

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.82  E-value=0.028  Score=61.42  Aligned_cols=150  Identities=9%  Similarity=0.182  Sum_probs=94.4

Q ss_pred             CCEEEEE-ECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126          296 GQYLASG-GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (493)
Q Consensus       296 g~~Lasg-s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (493)
                      .++|+.- .....|+-.|+..|+.+..++.+...+ ...+.+....         .....-..+.+-.+..+..|++++-
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~---------aqlt~e~tflGls~n~lfriDpR~~  562 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKF---------AQLTNEQTFLGLSDNSLFRIDPRLS  562 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcc-eeEecccccc---------cccCCCceEEEECCCceEEeccCCC
Confidence            3444433 355789999999999999998876543 2222222100         0011112344455556667777643


Q ss_pred             e--ecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCC
Q 011126          375 R--LLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG  451 (493)
Q Consensus       375 ~--~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg  451 (493)
                      .  +.....+. ........|++-..+|+||.|+.+|.|||||--..+....+. .+.+|..|..+. ||++|++.+ +.
T Consensus       563 ~~k~v~~~~k~-Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc-~t  639 (794)
T PF08553_consen  563 GNKLVDSQSKQ-YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTA-DGKWILATC-KT  639 (794)
T ss_pred             CCceeeccccc-cccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecC-CCcEEEEee-cc
Confidence            2  11111111 134557889999999999999999999999954333333343 689999999999 999988765 45


Q ss_pred             eEEEEeC
Q 011126          452 KVRIWEV  458 (493)
Q Consensus       452 ~V~IWdl  458 (493)
                      .|.+++.
T Consensus       640 yLlLi~t  646 (794)
T PF08553_consen  640 YLLLIDT  646 (794)
T ss_pred             eEEEEEE
Confidence            6777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.81  E-value=0.014  Score=62.36  Aligned_cols=106  Identities=20%  Similarity=0.344  Sum_probs=78.8

Q ss_pred             ceeccCCCeEEeee----cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126          241 ATLKPGDHELTLGQ----RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       241 ~~fsp~g~~lasgs----~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      ..|||...++|+++    ..|.|.||--..... ..-     ++.-|   +++++|+|..-.|+.|=.-|.+.+|...+.
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEPq-r~V-----t~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~   91 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEPQ-RDV-----TYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT   91 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEecCCCCC-ccc-----cccee---hhhhccChHHHHHhhccccceeEEEecCCc
Confidence            68999999999876    568899985432211 100     11223   456999999889999999999999986543


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (493)
                      +.                                                              -.....|..+|..+.|
T Consensus        92 e~--------------------------------------------------------------htv~~th~a~i~~l~w  109 (1416)
T KOG3617|consen   92 ET--------------------------------------------------------------HTVVETHPAPIQGLDW  109 (1416)
T ss_pred             ee--------------------------------------------------------------eeeccCCCCCceeEEe
Confidence            31                                                              0112358999999999


Q ss_pred             eCCC-eEEEEeCCCeEEEEECC
Q 011126          397 SKNG-FLLSSSADKTVRLWQVG  417 (493)
Q Consensus       397 sp~g-~l~sgs~Dg~V~lWd~~  417 (493)
                      |++| .|+|+..-|.|.+|...
T Consensus       110 S~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  110 SHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cCCCCeEEEcCCCceeEEEEee
Confidence            9999 99999999999999765

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.80  E-value=0.051  Score=55.34  Aligned_cols=169  Identities=18%  Similarity=0.208  Sum_probs=90.3

Q ss_pred             CEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee-eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc
Q 011126          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD-GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (493)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  364 (493)
                      .|+.|.|.++..-|+.|...|.|.||.....+... .............+..+.                       ...
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~   59 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNN-----------------------SPG   59 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGG-----------------------SS-
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccC-----------------------CCc
Confidence            58899999998899999999999999886543321 000000000000000000                       000


Q ss_pred             eEEEcCCC---ceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec---------CCCcEE
Q 011126          365 TCVVLPPK---VFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVT  432 (493)
Q Consensus       365 ~~~~~~~~---~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~---------h~~~V~  432 (493)
                      .+.-...+   ..+.--.|...+....++|++++.|.-|+++.|..+|.+.|.|++....+..-.         ...+|+
T Consensus        60 ~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt  139 (395)
T PF08596_consen   60 KLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVT  139 (395)
T ss_dssp             SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EE
T ss_pred             ceEEehhhCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCee
Confidence            11100000   000011345556667899999999988899999999999999999887776632         345799


Q ss_pred             EEEEcc----CCC---CEEEEEeCCCeEEEEeCC--C-Ce----EEEe-cCCCCCeEEEE
Q 011126          433 SVAFNP----VDD---NYFISGSIDGKVRIWEVR--R-CQ----VVDY-TDIREIVSAVC  477 (493)
Q Consensus       433 ~v~fsp----~d~---~~l~sgs~Dg~V~IWdl~--~-~~----~~~~-~~~~~~I~sv~  477 (493)
                      ++.|..    .|+   -.+++|...|.+.+|.+.  . +.    .... ..+.++|..|+
T Consensus       140 ~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~  199 (395)
T PF08596_consen  140 SIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII  199 (395)
T ss_dssp             EEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE
T ss_pred             EEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE
Confidence            999973    122   368899999999999875  1 21    1222 25566666665

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.74  E-value=0.15  Score=55.04  Aligned_cols=188  Identities=12%  Similarity=0.115  Sum_probs=112.2

Q ss_pred             EEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcC
Q 011126          291 KFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP  370 (493)
Q Consensus       291 ~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  370 (493)
                      +|++.+..++.|+.+|.|.+.+- .-+.+..++..........+..+....++++..+...          ....+.+|+
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~----------np~llkiw~   98 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQG----------NPVLLKIWD   98 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCC----------CceEEEEec
Confidence            46788889999999998877762 2333355555444422223333333344444333321          111445555


Q ss_pred             CCceeecccce----EEEec-----CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECC--CC---cEEEEecCCCcEEEEE
Q 011126          371 PKVFRLLEKPL----HEFQG-----HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG--ID---RCLRVFSHNNYVTSVA  435 (493)
Q Consensus       371 ~~~~~~~~~~~----~~~~~-----h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~--~~---~~~~~~~h~~~V~~v~  435 (493)
                      ....+....|.    +.+..     ...++.+|+.+.+- .++.|-.+|.|..+.-.  ..   +......-..+||.++
T Consensus        99 lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~  178 (933)
T KOG2114|consen   99 LEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA  178 (933)
T ss_pred             ccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence            54332222121    12222     35578899999887 88999999999998532  11   1111223568999999


Q ss_pred             EccCCCCEEEEEeCCCeEEEEeCCCCe--EEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          436 FNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       436 fsp~d~~~l~sgs~Dg~V~IWdl~~~~--~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      +.. ++..++-...-..|.+|.+....  ......+...+++..+++.-.-+++++.
T Consensus       179 ~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~  234 (933)
T KOG2114|consen  179 LRS-DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS  234 (933)
T ss_pred             Eec-CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC
Confidence            998 77763434445679999998555  2236667778888888876654555554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.71  E-value=0.026  Score=58.11  Aligned_cols=95  Identities=22%  Similarity=0.267  Sum_probs=63.4

Q ss_pred             EEEEeCCC--eEEEEeCCCe--EEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeC-CC--eEEEEeCCCCeEE
Q 011126          393 DLSWSKNG--FLLSSSADKT--VRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVV  464 (493)
Q Consensus       393 ~l~~sp~g--~l~sgs~Dg~--V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~IWdl~~~~~~  464 (493)
                      .-+|+|+|  ++++...|+.  |.+.|+..+...+ +. ..+.-+.-.|+| +|++++-.+. .|  .|.++++..+++.
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~  319 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVT  319 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCcee
Confidence            45799999  6667777776  5555777766444 43 233334678999 9998886654 34  4777777777665


Q ss_pred             EecCCCCCeEEEEEccCCCEEEEee
Q 011126          465 DYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       465 ~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .+......-..-.|+|||++++..+
T Consensus       320 riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         320 RLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             EeeccCCCCcCccCCCCCCEEEEEe
Confidence            4433333333778999999998766

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.71  E-value=0.38  Score=47.33  Aligned_cols=58  Identities=12%  Similarity=0.225  Sum_probs=44.8

Q ss_pred             eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeCCCCeEEEec
Q 011126          410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVVDYT  467 (493)
Q Consensus       410 ~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl~~~~~~~~~  467 (493)
                      .|.++|+.+++.+..+....++.+|+.+..+..+|++. ..++.|.|||..+++++...
T Consensus       270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            48888999999999998777888999998444466654 45899999999999988543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.61  E-value=0.51  Score=46.80  Aligned_cols=167  Identities=18%  Similarity=0.242  Sum_probs=97.5

Q ss_pred             CCeEEeeec----------CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126          247 DHELTLGQR----------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       247 g~~lasgs~----------dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      ..++++|+.          .|+|.++++.+.......+..... ....++|++|+-- ++ +|+.+. .+.|.+|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCc
Confidence            467777653          299999999874110011111111 2357889998876 44 454443 478999998665


Q ss_pred             e-eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          317 E-RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       317 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      + ...                                                            ...+. ....++++.
T Consensus       118 ~~l~~------------------------------------------------------------~~~~~-~~~~i~sl~  136 (321)
T PF03178_consen  118 KTLLK------------------------------------------------------------KAFYD-SPFYITSLS  136 (321)
T ss_dssp             SSEEE------------------------------------------------------------EEEE--BSSSEEEEE
T ss_pred             ccchh------------------------------------------------------------hheec-ceEEEEEEe
Confidence            5 111                                                            11111 123566776


Q ss_pred             EeCCCeEEEEeCCCeEEEEECCC-CcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC-------C--e
Q 011126          396 WSKNGFLLSSSADKTVRLWQVGI-DRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-------C--Q  462 (493)
Q Consensus       396 ~sp~g~l~sgs~Dg~V~lWd~~~-~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~-------~--~  462 (493)
                      ...+ +++.|...+.|.++..+. ...+..+.   ....++++.|-+ +++.++.+..+|.|.++....       +  +
T Consensus       137 ~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~  214 (321)
T PF03178_consen  137 VFKN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPK  214 (321)
T ss_dssp             EETT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTB
T ss_pred             cccc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCccccccccc
Confidence            6644 888888888888875543 33344443   566799999987 557999999999999998862       2  2


Q ss_pred             EE--EecCCCCCeEEE---EEcc
Q 011126          463 VV--DYTDIREIVSAV---CYCP  480 (493)
Q Consensus       463 ~~--~~~~~~~~I~sv---~~sp  480 (493)
                      +.  ........|+++   ++.|
T Consensus       215 L~~~~~f~lg~~v~~~~~~~l~~  237 (321)
T PF03178_consen  215 LERISSFHLGDIVNSFRRGSLIP  237 (321)
T ss_dssp             EEEEEEEE-SS-EEEEEE--SS-
T ss_pred             ceeEEEEECCCccceEEEEEeee
Confidence            32  344556778888   5556

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.59  E-value=0.73  Score=45.31  Aligned_cols=105  Identities=11%  Similarity=0.191  Sum_probs=68.2

Q ss_pred             EecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC--C----cEEEEe-c-CCCcEEEEEEccCCCCEEEEEeCCC-e
Q 011126          384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI--D----RCLRVF-S-HNNYVTSVAFNPVDDNYFISGSIDG-K  452 (493)
Q Consensus       384 ~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~--~----~~~~~~-~-h~~~V~~v~fsp~d~~~l~sgs~Dg-~  452 (493)
                      +..|-..-+.|+|||++  ++++=+..+.|.-|++..  +    +....+ . ..+..-.++... ++++.+++..+| .
T Consensus       158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~  236 (307)
T COG3386         158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGR  236 (307)
T ss_pred             ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCce
Confidence            34445556789999999  555556668888887752  1    111111 1 345566677777 888887655554 9


Q ss_pred             EEEEeCCCCeEEEecCCC-CCeEEEEEc-cCCCEEEEeec
Q 011126          453 VRIWEVRRCQVVDYTDIR-EIVSAVCYC-PDGKVRQNSAC  490 (493)
Q Consensus       453 V~IWdl~~~~~~~~~~~~-~~I~sv~~s-pdG~~l~s~s~  490 (493)
                      |.+|+.. ++++...... ..+++++|- |+.+.|.+.+.
T Consensus       237 v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         237 VVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            9999998 7666543333 778888884 56666665554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.56  E-value=0.05  Score=59.56  Aligned_cols=110  Identities=16%  Similarity=0.231  Sum_probs=74.7

Q ss_pred             cceEEEecCCCC-EeEEEEeC-----CC-eEEEEeCCCeEEEEECCCCc--EEE----EecCCCcEEEEEEccCCCCEEE
Q 011126          379 KPLHEFQGHSSE-VLDLSWSK-----NG-FLLSSSADKTVRLWQVGIDR--CLR----VFSHNNYVTSVAFNPVDDNYFI  445 (493)
Q Consensus       379 ~~~~~~~~h~~~-V~~l~~sp-----~g-~l~sgs~Dg~V~lWd~~~~~--~~~----~~~h~~~V~~v~fsp~d~~~l~  445 (493)
                      +.+.....|... |.+++=..     +. ..+.|-.++.+..||.+-..  ++.    .+......+|++-+.  ..+||
T Consensus       515 KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~--~G~ia  592 (794)
T PF08553_consen  515 KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE--DGYIA  592 (794)
T ss_pred             cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecC--CceEE
Confidence            335555555433 55543321     12 56677788899999998643  222    223556778887765  56899


Q ss_pred             EEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeec
Q 011126          446 SGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       446 sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      .|+.+|.||+||--..+.. .+.+...+|..|..+.||+++++.+.
T Consensus       593 vgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  593 VGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             EEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence            9999999999995432222 36678899999999999999977653

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.55  E-value=0.022  Score=60.64  Aligned_cols=89  Identities=18%  Similarity=0.277  Sum_probs=70.0

Q ss_pred             CC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccC----CCCEEEEEeCCCeEEEEeCC---CCeEEEecCCC
Q 011126          399 NG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV----DDNYFISGSIDGKVRIWEVR---RCQVVDYTDIR  470 (493)
Q Consensus       399 ~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~----d~~~l~sgs~Dg~V~IWdl~---~~~~~~~~~~~  470 (493)
                      .| ++++|+.||+|.|-.+-+.+...++...-++.+|+++|.    ..+.+++|+.-| +.++.-+   ....+......
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e  160 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE  160 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence            46 999999999999999999999998988899999999992    256899999998 7777643   22333456677


Q ss_pred             CCeEEEEEccCCCEEEEeec
Q 011126          471 EIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       471 ~~I~sv~~spdG~~l~s~s~  490 (493)
                      ++|.+++|.  |.++|=++.
T Consensus       161 G~I~~i~W~--g~lIAWand  178 (846)
T KOG2066|consen  161 GPIHSIKWR--GNLIAWAND  178 (846)
T ss_pred             cceEEEEec--CcEEEEecC
Confidence            899999985  445555443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.50  E-value=1.1  Score=45.08  Aligned_cols=234  Identities=13%  Similarity=0.144  Sum_probs=121.7

Q ss_pred             ccCCCeEEee---------ecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126          244 KPGDHELTLG---------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (493)
Q Consensus       244 sp~g~~lasg---------s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~  314 (493)
                      |||+++++..         +..+.+.|+|+.+....  .      +......+....|+|+|++||-.. ++.|.++++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~--~------l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~   71 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT--P------LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA   71 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE--E------SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE--E------CcCCccccccceeecCCCeeEEEe-cCceEEEECC
Confidence            5677766663         23467888888864322  1      111256788999999999998875 5689999987


Q ss_pred             CCeeeeeeecc-----------------CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCC--------------
Q 011126          315 EHERLDGFDVQ-----------------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD--------------  363 (493)
Q Consensus       315 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------------  363 (493)
                      ++...+.-...                 ......+.|++++. .++.+..+...+...........              
T Consensus        72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~-~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk  150 (353)
T PF00930_consen   72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK-YLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK  150 (353)
T ss_dssp             TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS-EEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B
T ss_pred             CCCeEEeccccceeEEcCccceeccccccccccceEECCCCC-EEEEEEECCcCCceEEeeccCCccccCCcccccccCC
Confidence            77443222211                 11234455555554 33333333333332222221111              


Q ss_pred             -------ceEEEcCCCceeecccceEEE---ecCCCCEeEEEEeCCC-eEEEE--eCCC---eEEEEECCCCcEEEEec-
Q 011126          364 -------LTCVVLPPKVFRLLEKPLHEF---QGHSSEVLDLSWSKNG-FLLSS--SADK---TVRLWQVGIDRCLRVFS-  426 (493)
Q Consensus       364 -------~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~l~~sp~g-~l~sg--s~Dg---~V~lWd~~~~~~~~~~~-  426 (493)
                             ..+.+++.......  .+...   ..-...+..+.|.+++ .|+..  ..+.   .+.+.|..++.+...+. 
T Consensus       151 ~G~~np~v~l~v~~~~~~~~~--~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e  228 (353)
T PF00930_consen  151 AGDPNPRVSLFVVDLASGKTT--ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE  228 (353)
T ss_dssp             TTS---EEEEEEEESSSTCCC--EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred             CCCcCCceEEEEEECCCCcEE--EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence                   11112222111110  01111   1234467889999988 34433  3332   36667887765544332 


Q ss_pred             -CCCcE---EEEEEc-cCCCCEEEEEeCCC--eEEEEeCCCCeEEEecCCCCCeEE-EEEccCCCEEEEee
Q 011126          427 -HNNYV---TSVAFN-PVDDNYFISGSIDG--KVRIWEVRRCQVVDYTDIREIVSA-VCYCPDGKVRQNSA  489 (493)
Q Consensus       427 -h~~~V---~~v~fs-p~d~~~l~sgs~Dg--~V~IWdl~~~~~~~~~~~~~~I~s-v~~spdG~~l~s~s  489 (493)
                       ....|   ..+.|. +....+|.....||  .|.+++..++....+....-.|+. +.|+++++.|...+
T Consensus       229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a  299 (353)
T PF00930_consen  229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTA  299 (353)
T ss_dssp             ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEE
T ss_pred             cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEe
Confidence             22222   245554 63555665666776  466667777777777777777855 67899988765443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.96  Score=46.08  Aligned_cols=178  Identities=15%  Similarity=0.160  Sum_probs=116.9

Q ss_pred             cceeccCCCe-EEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC---CCcEEEEecCC
Q 011126          240 SATLKPGDHE-LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIE  315 (493)
Q Consensus       240 ~~~fsp~g~~-lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~V~iWdl~~  315 (493)
                      .+++++.+.. .+....+..|.+.|.........      ...+.  .-..++++|+++.+..+..   ++++.+.|-.+
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~------~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t  149 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS------IPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT  149 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE------eeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence            3778888874 44455668999999543321110      11122  4567899999987776655   56777777666


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      .+......                                                             .+ ..+ ..++
T Consensus       150 ~~~~~~~~-------------------------------------------------------------vG-~~P-~~~a  166 (381)
T COG3391         150 NKVTATIP-------------------------------------------------------------VG-NTP-TGVA  166 (381)
T ss_pred             CeEEEEEe-------------------------------------------------------------cC-CCc-ceEE
Confidence            55433211                                                             11 122 7889


Q ss_pred             EeCCC--eEEEEeCCCeEEEEECCCCcEEE-----EecCCCcEEEEEEccCCCCEEEEEeCC---CeEEEEeCCCCeEEE
Q 011126          396 WSKNG--FLLSSSADKTVRLWQVGIDRCLR-----VFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVVD  465 (493)
Q Consensus       396 ~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~-----~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWdl~~~~~~~  465 (493)
                      +.|+|  .+++-..+++|.+.|.......+     ..........+.++| ++.++......   +.+.+.|..++.+..
T Consensus       167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~  245 (381)
T COG3391         167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTATGNVTA  245 (381)
T ss_pred             ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence            99998  44455688999999987766664     233444556799999 88865554433   699999999998886


Q ss_pred             ecCC-CC-CeEEEEEccCCCEEEEee
Q 011126          466 YTDI-RE-IVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       466 ~~~~-~~-~I~sv~~spdG~~l~s~s  489 (493)
                      .... .. ....+..+|+|+.+.+..
T Consensus       246 ~~~~~~~~~~~~v~~~p~g~~~yv~~  271 (381)
T COG3391         246 TDLPVGSGAPRGVAVDPAGKAAYVAN  271 (381)
T ss_pred             eccccccCCCCceeECCCCCEEEEEe
Confidence            4222 12 467789999999988774

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.97  E-value=0.49  Score=44.94  Aligned_cols=207  Identities=12%  Similarity=0.193  Sum_probs=97.4

Q ss_pred             eeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          231 MARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      +.+..+.+..++|.|+. .++++....+.|...+....  .+...    .+.+ .+..-.|++..++.++++--.++.+.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~--vlr~i----~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~   89 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK--VLRRI----PLDG-FGDYEGITYLGNGRYVLSEERDQRLY   89 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEE----E-SS--SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC--EEEEE----eCCC-CCCceeEEEECCCEEEEEEcCCCcEE
Confidence            34444556679999975 56677778888887776422  12211    2233 35678889988887777665689999


Q ss_pred             EEecCCCee------eeeeeccC-----CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126          310 VWKVIEHER------LDGFDVQD-----TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (493)
Q Consensus       310 iWdl~~~~~------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (493)
                      +.++.....      ...+....     ...-.+++.+.....++.-.-.+..+.......  ....+.+.       ..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~--~~~~~~~~-------~~  160 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP--GGFDLFVS-------DD  160 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT---SS--EEE-------E-
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc--Cccceeec-------cc
Confidence            999843221      11222111     112334443333322222111110100000000  00001000       00


Q ss_pred             cceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecCC----------CcEEEEEEccCCCCEEEE
Q 011126          379 KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHN----------NYVTSVAFNPVDDNYFIS  446 (493)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~----------~~V~~v~fsp~d~~~l~s  446 (493)
                      ............+.+++++|..  +++.+...+.|.++| ..++.+..+.-.          ...-.|+|.| +|++.++
T Consensus       161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIv  238 (248)
T PF06977_consen  161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIV  238 (248)
T ss_dssp             HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEE
T ss_pred             cccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEE
Confidence            0111112244568899999975  777788899999999 667777766411          3577899999 8876666


Q ss_pred             EeCCCeEEEE
Q 011126          447 GSIDGKVRIW  456 (493)
Q Consensus       447 gs~Dg~V~IW  456 (493)
                      . .-+..+++
T Consensus       239 s-EpNlfy~f  247 (248)
T PF06977_consen  239 S-EPNLFYRF  247 (248)
T ss_dssp             E-TTTEEEEE
T ss_pred             c-CCceEEEe
Confidence            4 55555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.93  E-value=0.22  Score=55.05  Aligned_cols=85  Identities=19%  Similarity=0.260  Sum_probs=64.7

Q ss_pred             CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (493)
Q Consensus       246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~  325 (493)
                      .+..++.|+..|.|...|...+-..+.   .   -..-+++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~---~---ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLH---Q---NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhh---c---CCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence            344678888888888888765422111   0   1123679999999999999999999999999999999999988888


Q ss_pred             CCCCceEEEee
Q 011126          326 DTDPSCLYFTI  336 (493)
Q Consensus       326 ~~~~~~~~~~~  336 (493)
                      ..+...+.+..
T Consensus       172 ~ap~t~vi~v~  182 (1206)
T KOG2079|consen  172 GAPVTGVIFVG  182 (1206)
T ss_pred             CCccceEEEEE
Confidence            77776665443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.89  E-value=0.12  Score=53.19  Aligned_cols=106  Identities=19%  Similarity=0.253  Sum_probs=74.5

Q ss_pred             ecCCCCEeEEEEeCCC-eEE--EE-eCC-CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE-eCCC--eEEEE
Q 011126          385 QGHSSEVLDLSWSKNG-FLL--SS-SAD-KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDG--KVRIW  456 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~--sg-s~D-g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg--~V~IW  456 (493)
                      ..-...+..-+|+|++ .++  +- ... ..+.++++.+++..........-..-+|+| |++.|+-. ..||  .|+++
T Consensus       189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy~~  267 (425)
T COG0823         189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDIYLM  267 (425)
T ss_pred             cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccEEEE
Confidence            3334566677899988 322  22 222 469999999988877777666666789999 88877654 4555  47778


Q ss_pred             eCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          457 EVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       457 dl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      |+.+++...+....+.-+.-.|+|||++++-.+..
T Consensus       268 dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr  302 (425)
T COG0823         268 DLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDR  302 (425)
T ss_pred             cCCCCcceecccCCccccCccCCCCCCEEEEEeCC
Confidence            88888766655555555577899999999877653

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.88  E-value=0.25  Score=50.62  Aligned_cols=151  Identities=13%  Similarity=0.216  Sum_probs=93.9

Q ss_pred             CCCEE-EEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc
Q 011126          295 DGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV  373 (493)
Q Consensus       295 dg~~L-asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  373 (493)
                      +.++| .++..-..++-.|+..|+.+...+.+.. +..+.+.+.....         .......+.+-.+..+.-|++++
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~---------Ql~~e~TlvGLs~n~vfriDpRv  413 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFA---------QLTSEQTLVGLSDNSVFRIDPRV  413 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchh---------cccccccEEeecCCceEEecccc
Confidence            44444 4555556788899999999999888766 3333333332211         11122234455566677777764


Q ss_pred             eeecccceEEEecC----CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEe
Q 011126          374 FRLLEKPLHEFQGH----SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS  448 (493)
Q Consensus       374 ~~~~~~~~~~~~~h----~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs  448 (493)
                      -...  .+....+|    .....|.+-..+|+++.|+.+|.|||||--..+....+. ...+|+.|..+. +|.+|+..+
T Consensus       414 ~~~~--kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvta-dGKwil~Tc  490 (644)
T KOG2395|consen  414 QGKN--KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTA-DGKWILATC  490 (644)
T ss_pred             cCcc--eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeec-cCcEEEEec
Confidence            3321  12222222    334567777777899999999999999973333333333 778999999998 898877654


Q ss_pred             CCCeEEEEeCC
Q 011126          449 IDGKVRIWEVR  459 (493)
Q Consensus       449 ~Dg~V~IWdl~  459 (493)
                       +..+.+.++.
T Consensus       491 -~tyLlLi~t~  500 (644)
T KOG2395|consen  491 -KTYLLLIDTL  500 (644)
T ss_pred             -ccEEEEEEEe
Confidence             5567777664

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.87  E-value=1.4  Score=42.36  Aligned_cols=161  Identities=16%  Similarity=0.145  Sum_probs=94.0

Q ss_pred             ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeee
Q 011126          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD  323 (493)
Q Consensus       244 sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~  323 (493)
                      ...++.|+.|+.+| +.+++.........        ..+...|..|...|+-+.|++-+ |+.++++++..-.......
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~--------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTR--------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCcccee--------EeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccc
Confidence            45678899999998 88888822221111        12334499999999877776654 5999999986554322110


Q ss_pred             ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE--EeCCC-
Q 011126          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS--WSKNG-  400 (493)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~--~sp~g-  400 (493)
                      .... ...      .                                         ...........+...+  -...+ 
T Consensus        74 ~~~~-~~~------~-----------------------------------------~~~~~~~~~~~v~~f~~~~~~~~~  105 (275)
T PF00780_consen   74 PLAF-PKS------R-----------------------------------------SLPTKLPETKGVSFFAVNGGHEGS  105 (275)
T ss_pred             cccc-ccc------c-----------------------------------------cccccccccCCeeEEeeccccccc
Confidence            0000 000      0                                         0000001122222222  11223 


Q ss_pred             eEEEEeCCCeEEEEECCCC-----cEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 011126          401 FLLSSSADKTVRLWQVGID-----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~~~-----~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~  466 (493)
                      ..+.....++|.+|.....     ..++.+.....+..++|.+   +.|+.|..++ ..+.|+.++....+
T Consensus       106 ~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~~~l  172 (275)
T PF00780_consen  106 RRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSPSEL  172 (275)
T ss_pred             eEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCceEE
Confidence            4444445568998887653     4667777889999999974   6777776554 88999997766543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.85  E-value=1.5  Score=45.15  Aligned_cols=71  Identities=13%  Similarity=0.163  Sum_probs=50.6

Q ss_pred             CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecC--CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~  461 (493)
                      .+++..|+.||+| ++|.-..+|.+.+....-.+.+..+..  ......+.|+- ++..++.-  ...|.+......
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG-~dav~l~~--~~~l~lvg~~~~  289 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG-NDAVVLSW--EDELLLVGPDGD  289 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC-CCcEEEEe--CCEEEEECCCCC
Confidence            4689999999999 888888899999998776677766653  36777888976 44333332  455666664433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.85  E-value=0.034  Score=37.91  Aligned_cols=32  Identities=19%  Similarity=0.413  Sum_probs=29.2

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      ....|.+++|+| ..++||.|+.+|.|.|+.+.
T Consensus        10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence            456799999999 99999999999999999993

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.78  E-value=2.7  Score=42.95  Aligned_cols=63  Identities=14%  Similarity=0.158  Sum_probs=45.5

Q ss_pred             CeEEEEeCCCeEEEEECCCCcEEEEecC--CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126          400 GFLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       400 g~l~sgs~Dg~V~lWd~~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                      +.++.++.++.|..+|..+++.+-....  .....+...   .+.+|+.++.||.|++.|..+++++.
T Consensus       295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~ld~~tG~~~~  359 (394)
T PRK11138        295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHWINREDGRFVA  359 (394)
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            3677778899999999998877654331  111222222   35678889999999999999999884

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.76  E-value=0.033  Score=38.02  Aligned_cols=34  Identities=26%  Similarity=0.457  Sum_probs=29.9

Q ss_pred             cCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       284 ~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~  318 (493)
                      ...|.+++|+|...+||.+..+|.|.|+.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356999999999999999999999999998 5543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.68  E-value=1.1  Score=45.91  Aligned_cols=57  Identities=14%  Similarity=0.142  Sum_probs=41.9

Q ss_pred             CCeEEEEeCCCeEEEEECCCCcEEEEecC-CCcEE-EEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126          399 NGFLLSSSADKTVRLWQVGIDRCLRVFSH-NNYVT-SVAFNPVDDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       399 ~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h-~~~V~-~v~fsp~d~~~l~sgs~Dg~V~IWdl  458 (493)
                      +++|+.++.+|.|.+.|..+++.+..... ...+. ...+   .+..|+.++.||.|+.+++
T Consensus       335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~---~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        335 NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV---ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE---ECCEEEEEeCCceEEEEeC
Confidence            45888899999999999999998877752 23232 2222   2457888899999988765

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.52  E-value=0.0043  Score=64.17  Aligned_cols=154  Identities=14%  Similarity=0.205  Sum_probs=95.7

Q ss_pred             cccceeccC-CCeEEeee----cCCeEEEEECCCccc-cccccccceeeec-ccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          238 HGSATLKPG-DHELTLGQ----RMRRVRVHPVKKQSR-ELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       238 ~~~~~fsp~-g~~lasgs----~dg~V~vwd~~~~~~-~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      .++++|.+- .+.||+|-    .|..+.|||+...-. +....    .+.+ .......++|-.+.+++++|.....+++
T Consensus       105 Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~----~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~i  180 (783)
T KOG1008|consen  105 CTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESP----LFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHI  180 (783)
T ss_pred             ccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccc----ccccccccCccccccccCcchhhcccccchhhh
Confidence            344666554 34556553    456799999876521 11111    1122 3345668889888889999998889999


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      +|+.....                                                               ....-.+..
T Consensus       181 fdlRqs~~---------------------------------------------------------------~~~svnTk~  197 (783)
T KOG1008|consen  181 FDLRQSLD---------------------------------------------------------------SVSSVNTKY  197 (783)
T ss_pred             hhhhhhhh---------------------------------------------------------------hhhhhhhhh
Confidence            99852210                                                               000011234


Q ss_pred             EeEEEEeC-CC-eEEEEeCCCeEEEEEC-C-CCcEEEEecCC-----CcEEEEEEccCCCCEEEEEeCC-CeEEEEeCC
Q 011126          391 VLDLSWSK-NG-FLLSSSADKTVRLWQV-G-IDRCLRVFSHN-----NYVTSVAFNPVDDNYFISGSID-GKVRIWEVR  459 (493)
Q Consensus       391 V~~l~~sp-~g-~l~sgs~Dg~V~lWd~-~-~~~~~~~~~h~-----~~V~~v~fsp~d~~~l~sgs~D-g~V~IWdl~  459 (493)
                      +..+...| .+ ++++-. |+.|.+||. + -..++..+.|.     ..+..++|+|.....+++.+.| ++|+++|+.
T Consensus       198 vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  198 VQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            45566667 33 666555 999999993 2 22333333322     3499999999777788888876 789999986

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.10  E-value=0.68  Score=44.02  Aligned_cols=63  Identities=16%  Similarity=0.196  Sum_probs=45.8

Q ss_pred             ceeccCCCeEEeeec-----CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126          241 ATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (493)
Q Consensus       241 ~~fsp~g~~lasgs~-----dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW  311 (493)
                      -.|||+|.+|...-.     -|.|-|||....-.      ..-++..|.-.-..|.|.+||+.|+.+  +|-|..-
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq------rvgE~~t~GiGpHev~lm~DGrtlvva--nGGIeth  186 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ------RVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETH  186 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEecccccc------eecccccCCcCcceeEEecCCcEEEEe--CCceecc
Confidence            579999999987543     37899999874322      233566777777889999999998876  3445554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.00  E-value=0.97  Score=45.78  Aligned_cols=99  Identities=15%  Similarity=0.088  Sum_probs=59.3

Q ss_pred             CCEeEEEEeCCCeEEEEeCCCeEEEEECCCC-----c---EEEEecC-----CCcEEEEEEccCCCCEEEEEeC------
Q 011126          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGID-----R---CLRVFSH-----NNYVTSVAFNPVDDNYFISGSI------  449 (493)
Q Consensus       389 ~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~-----~---~~~~~~h-----~~~V~~v~fsp~d~~~l~sgs~------  449 (493)
                      ...+.|++.++| |+.+......++.|....     +   .+..+..     ......+.|.| ++.+.++-+.      
T Consensus        72 ~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~  149 (367)
T TIGR02604        72 SMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKV  149 (367)
T ss_pred             CCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCcee
Confidence            345778888888 444444444444454321     1   1122221     34477899999 8887665542      


Q ss_pred             -------------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126          450 -------------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       450 -------------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                                   .|.|.-++..++++..+.........++|+|+|+++++-.
T Consensus       150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                         1456667776666554433334567899999999887643

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.91  E-value=0.36  Score=49.51  Aligned_cols=106  Identities=17%  Similarity=0.238  Sum_probs=71.7

Q ss_pred             eEEEecCCCCEeEEEEeCCC---e-----EEEEeCCCeEEEEECCCCcE--EEEe-----cCCCcEEEEEEccCCCCEEE
Q 011126          381 LHEFQGHSSEVLDLSWSKNG---F-----LLSSSADKTVRLWQVGIDRC--LRVF-----SHNNYVTSVAFNPVDDNYFI  445 (493)
Q Consensus       381 ~~~~~~h~~~V~~l~~sp~g---~-----l~sgs~Dg~V~lWd~~~~~~--~~~~-----~h~~~V~~v~fsp~d~~~l~  445 (493)
                      +....-|.. |+-+.+.|++   .     -+.|-.|..|.=||.+....  +..-     .......|++-.  ...++|
T Consensus       369 VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~Iv  445 (644)
T KOG2395|consen  369 VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGYIV  445 (644)
T ss_pred             eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCceEE
Confidence            344444444 6666677754   2     24455788899999884332  2221     233445566654  466899


Q ss_pred             EEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEee
Q 011126          446 SGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       446 sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .||.+|.||+||--..+.. .+.+...+|+.|..+.||++|++.+
T Consensus       446 vgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  446 VGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             EeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence            9999999999998333322 4788999999999999999987654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.58  E-value=0.1  Score=57.53  Aligned_cols=88  Identities=23%  Similarity=0.261  Sum_probs=65.2

Q ss_pred             eEEEEeCCCeEEEEECCCCcE--EEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCC---eE
Q 011126          401 FLLSSSADKTVRLWQVGIDRC--LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREI---VS  474 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~~~~~--~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~---I~  474 (493)
                      .++.|+..|.|-..|+...-+  ..--....+|++++|+. +|.+++.|-.+|.|.+||+.++++++ +..+..+   |.
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            788889899999998876422  22223678999999999 99999999999999999999988774 3444443   33


Q ss_pred             EEEEccCCCEEEEee
Q 011126          475 AVCYCPDGKVRQNSA  489 (493)
Q Consensus       475 sv~~spdG~~l~s~s  489 (493)
                      .+.+..++..++++-
T Consensus       180 ~v~~t~~nS~llt~D  194 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSD  194 (1206)
T ss_pred             EEEEeCCCcEEEEcc
Confidence            445556666666554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.46  E-value=4.9  Score=38.64  Aligned_cols=200  Identities=13%  Similarity=0.179  Sum_probs=116.0

Q ss_pred             eecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCC-CCceEEEeeCCCCceeeeeccCccccceeee
Q 011126          280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSL  358 (493)
Q Consensus       280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (493)
                      +.+-+..|.++.|+|+.+.|++......-.||=-.+|+.+.++..... .+..+.+..++  ..... -+  +......+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n--~fvi~-dE--R~~~l~~~  155 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN--QFVIV-DE--RDRALYLF  155 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC--EEEEE-eh--hcceEEEE
Confidence            455566699999999999998888877777887788998888865432 22222222221  11111 11  11111111


Q ss_pred             ecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc-EEEE--e-c-------
Q 011126          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-CLRV--F-S-------  426 (493)
Q Consensus       359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~-~~~~--~-~-------  426 (493)
                      ....+..+.......     -++......+...-.++|.|.+ .|..+-+-+-+.||.+.... .+..  . .       
T Consensus       156 ~vd~~t~~~~~~~~~-----i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~  230 (316)
T COG3204         156 TVDADTTVISAKVQK-----IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL  230 (316)
T ss_pred             EEcCCccEEeccceE-----EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence            112221211111100     0112222225567899999988 77777777778887765332 1111  0 0       


Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE--EEec----CCC---CCeEEEEEccCCCEEEEee
Q 011126          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--VDYT----DIR---EIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~--~~~~----~~~---~~I~sv~~spdG~~l~s~s  489 (493)
                      .-..|.++.|++..+.+|+-+..++.|.-.|....-+  +.+.    +..   ...-.|+..++|.+.+++-
T Consensus       231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE  302 (316)
T COG3204         231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE  302 (316)
T ss_pred             EeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence            1245788999997888888888899998888875532  2221    111   2356788899998776653

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.35  E-value=0.67  Score=51.75  Aligned_cols=99  Identities=14%  Similarity=0.088  Sum_probs=72.4

Q ss_pred             CCEeEEEEeCCC--eEEEEeCCCeEEEEECCC-CcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       389 ~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~-~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                      ....++.|+|.-  ..+.+..|+.|++..+.. ......+.....++|++|+| .|..++.|-..|++.-|...-.....
T Consensus       156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~leik~~  234 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLEIKSE  234 (1405)
T ss_pred             cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecccceeec
Confidence            345678898875  677788899999887753 23334456778899999999 99999999999999999765332111


Q ss_pred             e----cCCCCCeEEEEEccCCCEEEEe
Q 011126          466 Y----TDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       466 ~----~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      +    ......|.+|+|-..-.++++=
T Consensus       235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  235 IPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             ccCCCcCCCcceeEEEEecceeEEEEe
Confidence            1    1125789999998877776653

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.32  E-value=4.8  Score=37.97  Aligned_cols=74  Identities=16%  Similarity=0.108  Sum_probs=51.3

Q ss_pred             CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (493)
Q Consensus       246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~  325 (493)
                      -|++++.|...|.+++.+.+++.+--       .++.-..--......+++.++..|+.|++.+..|..+..++...+..
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w-------~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg  134 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIW-------NFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG  134 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhhee-------eeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccC
Confidence            45679999999999999887654211       11111111112345678999999999999999999988888776554


Q ss_pred             C
Q 011126          326 D  326 (493)
Q Consensus       326 ~  326 (493)
                      .
T Consensus       135 G  135 (354)
T KOG4649|consen  135 G  135 (354)
T ss_pred             C
Confidence            3

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.30  E-value=0.57  Score=48.86  Aligned_cols=103  Identities=17%  Similarity=0.261  Sum_probs=70.4

Q ss_pred             cCCCCEeEEEEeCCC-----eEEEEeCCCeEEEEECCC-----CcEEEEe--cC----CCcEEEEEEccCCCCEEEEEeC
Q 011126          386 GHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGI-----DRCLRVF--SH----NNYVTSVAFNPVDDNYFISGSI  449 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g-----~l~sgs~Dg~V~lWd~~~-----~~~~~~~--~h----~~~V~~v~fsp~d~~~l~sgs~  449 (493)
                      |.-..|..++|.|-+     -|++.-..+.|.||.+..     .+.+...  ..    .---..+.|+| ...+|+.-..
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~  132 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA  132 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence            344578999999964     677778889999999852     2222211  11    11235678999 7778777666


Q ss_pred             CCeEEEEeCC--CCeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126          450 DGKVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       450 Dg~V~IWdl~--~~~~~~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      ...-.+++++  +.++..-....+.|.+.||.+||+.|+++-
T Consensus       133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAv  174 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAV  174 (671)
T ss_pred             CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEe
Confidence            6555666665  334444457778999999999999888763

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.30  E-value=2.1  Score=39.62  Aligned_cols=96  Identities=9%  Similarity=0.172  Sum_probs=62.3

Q ss_pred             eEEEEeCCC--eEEEEeCCCeEEEEE--CCCCcE-----EEEecC-----CCcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126          392 LDLSWSKNG--FLLSSSADKTVRLWQ--VGIDRC-----LRVFSH-----NNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (493)
Q Consensus       392 ~~l~~sp~g--~l~sgs~Dg~V~lWd--~~~~~~-----~~~~~h-----~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd  457 (493)
                      +.|+|+.+.  +.++-+.+-+|.-||  ..++..     +..++.     .-..-.++..- +|+++++.-..|+|...|
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence            457777665  556677777787777  444432     222211     11222345565 889999998999999999


Q ss_pred             CCCCeEEE-ecCCCCCeEEEEEccC-CCEEEEe
Q 011126          458 VRRCQVVD-YTDIREIVSAVCYCPD-GKVRQNS  488 (493)
Q Consensus       458 l~~~~~~~-~~~~~~~I~sv~~spd-G~~l~s~  488 (493)
                      ..+++++. +.-....|+++||--- =..+++.
T Consensus       240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence            99999874 5555778999999543 3344443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.21  E-value=2.6  Score=46.43  Aligned_cols=80  Identities=14%  Similarity=0.177  Sum_probs=51.9

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCc----------cc--cccccccceee--ecccCCEEEEEEccC---CCEE
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQ----------SR--ELSSLYTGQEF--LAHEGSILTMKFSLD---GQYL  299 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~----------~~--~~~~~~~~~~l--~~H~~~I~~l~fspd---g~~L  299 (493)
                      .|..+.++|+|++||..+..|.+.+. +...          ..  ..........+  ..+...|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~-LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLE-LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEE-eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            34458899999999998886654443 3211          00  11111111111  234568999999995   5789


Q ss_pred             EEEECCCcEEEEecCCCe
Q 011126          300 ASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       300 asgs~Dg~V~iWdl~~~~  317 (493)
                      +.-..|+++|+||+....
T Consensus       165 ~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEecCCEEEEEecCCCC
Confidence            899999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.03  E-value=2.7  Score=39.59  Aligned_cols=84  Identities=15%  Similarity=0.142  Sum_probs=60.7

Q ss_pred             eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEE-EEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCC-eEEEEE
Q 011126          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTS-VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI-VSAVCY  478 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~-v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~-I~sv~~  478 (493)
                      .++.|+..+.+.+.+.+++.....|.....|.+ ....+ ++.++..|+.|++.+..|.++...+......+. ..+-+.
T Consensus        65 fVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i  143 (354)
T KOG4649|consen   65 FVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVI  143 (354)
T ss_pred             EEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcC-CCceEEEecCCCcEEEecccccceEEecccCCceecccee
Confidence            788999999999999999988877764444433 34455 899999999999999999998877744333332 233345


Q ss_pred             cc-CCCEE
Q 011126          479 CP-DGKVR  485 (493)
Q Consensus       479 sp-dG~~l  485 (493)
                      .| ++.+.
T Consensus       144 ~~g~~sly  151 (354)
T KOG4649|consen  144 APGDGSLY  151 (354)
T ss_pred             cCCCceEE
Confidence            55 44433

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.99  E-value=0.26  Score=53.00  Aligned_cols=96  Identities=13%  Similarity=0.091  Sum_probs=58.4

Q ss_pred             CCCEeEEEEeCCC-eEEEEe------CCC--eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC--------
Q 011126          388 SSEVLDLSWSKNG-FLLSSS------ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID--------  450 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs------~Dg--~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D--------  450 (493)
                      ...+...+++|+| .++..-      .|.  .|.+++... .. ..+......+.-.|+| ++..|++....        
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEec
Confidence            3467889999999 443332      244  455555422 22 3333333488899999 88877776532        


Q ss_pred             ----CeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEe
Q 011126          451 ----GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       451 ----g~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                          +.+.+.++..+....  .....|.++.|+|||+.++..
T Consensus       426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i  465 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMI  465 (591)
T ss_pred             cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEE
Confidence                233333443333322  345679999999999988764

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.84  E-value=5  Score=42.34  Aligned_cols=47  Identities=19%  Similarity=0.234  Sum_probs=32.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEE--EEEccCCCEEE
Q 011126          440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA--VCYCPDGKVRQ  486 (493)
Q Consensus       440 d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~s--v~~spdG~~l~  486 (493)
                      .+.+|+.++.||.|+.+|..+++++........+.+  +.|..+|+..+
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv  453 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYV  453 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEE
Confidence            567888889999999999999998854444444432  23455665443

The alignment model contains an 8-bladed beta-propeller.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=93.81  E-value=4  Score=41.58  Aligned_cols=99  Identities=19%  Similarity=0.276  Sum_probs=72.1

Q ss_pred             CEeEEEEeCCC-eE-EEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeCCCCeEE
Q 011126          390 EVLDLSWSKNG-FL-LSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       390 ~V~~l~~sp~g-~l-~sgs--~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl~~~~~~  464 (493)
                      ....++++|++ .+ ++-.  .++++.+.|..+...+....-...-..+++.| ++..++.. ..++.|.+.|.....+.
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCccee
Confidence            45678899988 33 3333  47999999999999888865443338999999 88855554 47899999998877666


Q ss_pred             E-----ecCCCCCeEEEEEccCCCEEEEee
Q 011126          465 D-----YTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       465 ~-----~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .     ..........+.++|+|+++.+..
T Consensus       196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~  225 (381)
T COG3391         196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVAN  225 (381)
T ss_pred             ccccccccccCCCCceEEECCCCCEEEEEe
Confidence            4     123334457789999999776653

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.75  E-value=1.9  Score=46.34  Aligned_cols=103  Identities=13%  Similarity=0.119  Sum_probs=70.7

Q ss_pred             CCCEeEEEEeCCCeEEE-EeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEcc-CCCCEEEEEeCCCeEEEEeCCC---
Q 011126          388 SSEVLDLSWSKNGFLLS-SSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNP-VDDNYFISGSIDGKVRIWEVRR---  460 (493)
Q Consensus       388 ~~~V~~l~~sp~g~l~s-gs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp-~d~~~l~sgs~Dg~V~IWdl~~---  460 (493)
                      -..+.-+.-+.-+.++. -+...++.|||.+.+.......  ..+.|..+.|.. .+++.+++.|....|.+|--..   
T Consensus        29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            34445555555553333 3445679999999887554433  588999999953 1788999999999999996421   


Q ss_pred             --C----e---EEEecCCC-CCeEEEEEccCCCEEEEeec
Q 011126          461 --C----Q---VVDYTDIR-EIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       461 --~----~---~~~~~~~~-~~I~sv~~spdG~~l~s~s~  490 (493)
                        .    .   .+....+. .+|.+.+|-++|..++.+|+
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN  148 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN  148 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence              1    1   12334444 68999999999988877664

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.71  E-value=1.9  Score=47.43  Aligned_cols=33  Identities=24%  Similarity=0.466  Sum_probs=27.9

Q ss_pred             cCCCCEeEEEEeCCC----eEEEEeCCCeEEEEECCC
Q 011126          386 GHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGI  418 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g----~l~sgs~Dg~V~lWd~~~  418 (493)
                      .+...|..+.|+|.+    .|+.-..|+++|+||+..
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            345689999999963    888889999999999964

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.67  E-value=1.9  Score=46.53  Aligned_cols=93  Identities=10%  Similarity=0.066  Sum_probs=56.8

Q ss_pred             EeEEEEeCCC-eEEEEeCC------------CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEE--
Q 011126          391 VLDLSWSKNG-FLLSSSAD------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI--  455 (493)
Q Consensus       391 V~~l~~sp~g-~l~sgs~D------------g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I--  455 (493)
                      .+.-.|+|+| .|++....            +.+.+.++..+....  .....|..+.|+| ||..++... +|+|+|  
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~  474 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV  474 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence            5567788886 55444322            233333444433322  3356799999999 999887765 578887  


Q ss_pred             -EeCCCCeEE-----Ee-cCCCCCeEEEEEccCCCEEEE
Q 011126          456 -WEVRRCQVV-----DY-TDIREIVSAVCYCPDGKVRQN  487 (493)
Q Consensus       456 -Wdl~~~~~~-----~~-~~~~~~I~sv~~spdG~~l~s  487 (493)
                       -....+...     .+ ......+.++.|.+++.+++.
T Consensus       475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~  513 (591)
T PRK13616        475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVG  513 (591)
T ss_pred             EEeCCCCceeecccEEeecccCCccccceEecCCEEEEE
Confidence             454455411     12 233445688999999996543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.62  E-value=0.089  Score=48.24  Aligned_cols=58  Identities=17%  Similarity=0.282  Sum_probs=36.0

Q ss_pred             eEEEEeCCCeEEEEECCCCcEEEEec-CC-CcEEEEEEccCCCCEEEEE--eCCCeEEEEeCC
Q 011126          401 FLLSSSADKTVRLWQVGIDRCLRVFS-HN-NYVTSVAFNPVDDNYFISG--SIDGKVRIWEVR  459 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~-~~V~~v~fsp~d~~~l~sg--s~Dg~V~IWdl~  459 (493)
                      +..+++.|+.||.|++.-.+.+.... |+ .++.....+. .+++++..  |.|..++.|++.
T Consensus       116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence            77888999999999998887776665 44 3333333333 34444444  455555555543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.62  E-value=9.7  Score=39.05  Aligned_cols=227  Identities=11%  Similarity=0.063  Sum_probs=104.7

Q ss_pred             cceeccCCCeEEee-----ecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC--------
Q 011126          240 SATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--------  306 (493)
Q Consensus       240 ~~~fsp~g~~lasg-----s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--------  306 (493)
                      ...++|+|+++|.+     +....|+|+|+.++.....      .+..-.  -..+.|.++++.|+....+.        
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d------~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD------GIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE------EEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC------cccccc--cceEEEeCCCCEEEEEEeCcccccccCC
Confidence            36789999998864     2234699999987632111      122111  12399999988776655433        


Q ss_pred             ---cEEEEecCCCeee--eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCC-ceEEEcCCCceeecccc
Q 011126          307 ---TVRVWKVIEHERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD-LTCVVLPPKVFRLLEKP  380 (493)
Q Consensus       307 ---~V~iWdl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~  380 (493)
                         .|+.|.+.+...-  ..+.........+..........+.+..           ..... ..+.+.+..........
T Consensus       200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~-----------~~~~~~s~v~~~d~~~~~~~~~~  268 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISS-----------SSGTSESEVYLLDLDDGGSPDAK  268 (414)
T ss_dssp             CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEE-----------ESSSSEEEEEEEECCCTTTSS-S
T ss_pred             CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEE-----------EccccCCeEEEEeccccCCCcCC
Confidence               3777777665432  2222222222122222222222222211           11111 33333333221000112


Q ss_pred             eEEEecCCCCEe-EEEEeCCC--eEEEE--eCCCeEEEEECCCCcE---E-EEecCCC--cEEEEEEccCCCCEEEEEeC
Q 011126          381 LHEFQGHSSEVL-DLSWSKNG--FLLSS--SADKTVRLWQVGIDRC---L-RVFSHNN--YVTSVAFNPVDDNYFISGSI  449 (493)
Q Consensus       381 ~~~~~~h~~~V~-~l~~sp~g--~l~sg--s~Dg~V~lWd~~~~~~---~-~~~~h~~--~V~~v~fsp~d~~~l~sgs~  449 (493)
                      ...+..+...+. .+... ++  ++.|-  ...+.|.-.++.....   . ..+.+..  .+..+...  .+.+++.--.
T Consensus       269 ~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~  345 (414)
T PF02897_consen  269 PKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRE  345 (414)
T ss_dssp             EEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEE
T ss_pred             cEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEE
Confidence            223333333343 34333 44  33332  2335666667776542   2 3444655  45555543  3344455555


Q ss_pred             CC--eEEEEeCC-CCeEEEec-CCCCCeEEEEEccCCCEEEEe
Q 011126          450 DG--KVRIWEVR-RCQVVDYT-DIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       450 Dg--~V~IWdl~-~~~~~~~~-~~~~~I~sv~~spdG~~l~s~  488 (493)
                      ++  .|+++++. +....... ...+.|..+...+++..+...
T Consensus       346 ~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~  388 (414)
T PF02897_consen  346 NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFS  388 (414)
T ss_dssp             TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEE
T ss_pred             CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEE
Confidence            54  68999999 55444332 233446777767777665544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.59  E-value=9.8  Score=39.01  Aligned_cols=193  Identities=16%  Similarity=0.080  Sum_probs=88.8

Q ss_pred             CEEEEEEccCCCEEEEE-ECCC----cEEEEecCCCeeeeee-eccCCCCceEEEeeCCCCceeeeeccCccccceeeee
Q 011126          286 SILTMKFSLDGQYLASG-GEDG----TVRVWKVIEHERLDGF-DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR  359 (493)
Q Consensus       286 ~I~~l~fspdg~~Lasg-s~Dg----~V~iWdl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (493)
                      .+..+.++|+|++||-+ +..|    +|+++|+.+++.+... ...  ....+.|..++. .++....+......    .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~-~~~y~~~~~~~~~~----~  197 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGK-GFFYTRFDEDQRTS----D  197 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSS-EEEEEECSTTTSS-----C
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCC-EEEEEEeCcccccc----c
Confidence            34467899999988755 3444    4999999999765432 211  111244443332 22222222211100    0


Q ss_pred             cCCCceEEEcCCCceeecccceEEEecCCC--CEeEEEEeCCC-e-EEEEeCC---CeEEEEECCCC-----cEEEEecC
Q 011126          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EVLDLSWSKNG-F-LLSSSAD---KTVRLWQVGID-----RCLRVFSH  427 (493)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~g-~-l~sgs~D---g~V~lWd~~~~-----~~~~~~~h  427 (493)
                      ......+..+......  ......+.....  ....+..++++ + ++.....   ..|.+.++..+     ........
T Consensus       198 ~~~~~~v~~~~~gt~~--~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~  275 (414)
T PF02897_consen  198 SGYPRQVYRHKLGTPQ--SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR  275 (414)
T ss_dssp             CGCCEEEEEEETTS-G--GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred             CCCCcEEEEEECCCCh--HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC
Confidence            1112223333222111  111122333232  25678899998 4 4444333   34778888764     33333344


Q ss_pred             CCcEEEEEEccCCCCEEEEEeC---CCeEEEEeCCCCeE---E-EecCCCCCeEEEEEccCCCEEEEe
Q 011126          428 NNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQV---V-DYTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       428 ~~~V~~v~fsp~d~~~l~sgs~---Dg~V~IWdl~~~~~---~-~~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      ...+....-+. .+.+++....   .+.|.-.++.+...   . .+..+...+.-..+...+.+|+..
T Consensus       276 ~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~  342 (414)
T PF02897_consen  276 EDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLS  342 (414)
T ss_dssp             SSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEE
T ss_pred             CCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEE
Confidence            44444333333 3444444322   46777778876541   2 344555543334444556666554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.45  E-value=3  Score=40.01  Aligned_cols=96  Identities=14%  Similarity=0.129  Sum_probs=58.0

Q ss_pred             EeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEE---------------EecCCCcEEEEE-EccCCCCEEEEEeCCCeE
Q 011126          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR---------------VFSHNNYVTSVA-FNPVDDNYFISGSIDGKV  453 (493)
Q Consensus       391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~---------------~~~h~~~V~~v~-fsp~d~~~l~sgs~Dg~V  453 (493)
                      |..|...|.- .|+.-+ |+.+.++++..-....               .+.....+...+ -....+...+......+|
T Consensus        38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i  116 (275)
T PF00780_consen   38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI  116 (275)
T ss_pred             EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence            8888888865 333333 5999999987543333               222334455444 112234444444555689


Q ss_pred             EEEeCCCC-----eEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126          454 RIWEVRRC-----QVVDYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       454 ~IWdl~~~-----~~~~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .||.....     +...-......+.+++|.  +..+++|.
T Consensus       117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen  117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             EEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence            99888753     344455566889999999  55666654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.30  E-value=7.8  Score=36.96  Aligned_cols=179  Identities=13%  Similarity=0.176  Sum_probs=105.7

Q ss_pred             CEEEEEEccCCCEEEEEECCC--cEEEEecCCCeeeeeeeccCCCCce-EEEeeCCCCceeeeeccCccccceeeeecCC
Q 011126          286 SILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSC-LYFTINHLSQLIPIDVDKEKIDKTKSLRKSS  362 (493)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg--~V~iWdl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  362 (493)
                      -...+.|..+|.++-+.|.-|  .|+.+|+.+++.......+..-..- +...   ...++.+.+              .
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~---~d~l~qLTW--------------k  108 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL---GDKLYQLTW--------------K  108 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE---TTEEEEEES--------------S
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE---CCEEEEEEe--------------c
Confidence            456788878888888888776  6999999999887766655432110 1110   011111111              2


Q ss_pred             CceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---CC---CcEEEEE
Q 011126          363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HN---NYVTSVA  435 (493)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~---~~V~~v~  435 (493)
                      ++..++++...+..    +.++.- .+.=..|+  .++ .|+.+.....|+++|..+.+..+.+.   ..   ..++-+.
T Consensus       109 ~~~~f~yd~~tl~~----~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE  181 (264)
T PF05096_consen  109 EGTGFVYDPNTLKK----IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE  181 (264)
T ss_dssp             SSEEEEEETTTTEE----EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred             CCeEEEEccccceE----EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence            33445555554433    333322 23445565  344 66666667889999998887777765   22   3456677


Q ss_pred             EccCCCCEEEEEeCCCeEEEEeCCCCeEEEecC-------------C---CCCeEEEEEccCCCEEEEeec
Q 011126          436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-------------I---REIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       436 fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~-------------~---~~~I~sv~~spdG~~l~s~s~  490 (493)
                      |-  +|.+.|=.=....|...|..+|+++.+.+             .   .+..+.|+|.|..+.+.+.|.
T Consensus       182 ~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  182 YI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            75  57677766667789999999999875321             1   356899999999887776653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=92.85  E-value=0.5  Score=43.46  Aligned_cols=65  Identities=18%  Similarity=0.150  Sum_probs=40.3

Q ss_pred             CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEE-EEccCCCEEEEEECCCcEEEEecCCCe
Q 011126          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTM-KFSLDGQYLASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       247 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l-~fspdg~~Lasgs~Dg~V~iWdl~~~~  317 (493)
                      +..+++|+.+|.|.+|+........ ..+     ..-...|-++ .-..++.+..+++.||.||.|++.-.+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~-d~~-----~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k  135 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHS-DRV-----CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK  135 (238)
T ss_pred             CceEEeecccceEEEecCCccchHH-Hhh-----hcccccceeccccccccceeEEeccCCceeeeccccCc
Confidence            4568899999999999876222111 111     1112233332 222355688899999999999986544

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=92.81  E-value=6.6  Score=38.81  Aligned_cols=99  Identities=15%  Similarity=0.148  Sum_probs=63.8

Q ss_pred             CCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCc-EEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC--CC
Q 011126          387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-CLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR--RC  461 (493)
Q Consensus       387 h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~-~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~--~~  461 (493)
                      ..++|++|+-- +++|+.+. .+.|.+|++...+ .+..-.  ....++++...   +++++.|..-..|.++..+  ..
T Consensus        87 ~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~  161 (321)
T PF03178_consen   87 VKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN  161 (321)
T ss_dssp             ESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE
T ss_pred             ecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC
Confidence            47889999876 44544444 4899999998877 444333  44577777765   4699999988888877544  33


Q ss_pred             eEEE--ecCCCCCeEEEEEccCCCEEEEeec
Q 011126          462 QVVD--YTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       462 ~~~~--~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ++..  .......++++.|-+|++.++++..
T Consensus       162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~  192 (321)
T PF03178_consen  162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDK  192 (321)
T ss_dssp             -EEEEEEESS-BEEEEEEEE-SSSEEEEEET
T ss_pred             EEEEEEecCCCccEEEEEEecCCcEEEEEcC
Confidence            3432  2334556899999877776666544

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.77  E-value=0.032  Score=60.11  Aligned_cols=170  Identities=18%  Similarity=0.226  Sum_probs=93.4

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEE-----------EccCCCEEEEEEC
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK-----------FSLDGQYLASGGE  304 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~-----------fspdg~~Lasgs~  304 (493)
                      +.|.+.-|-++.-++..+-.++.|++.++......        .+.+|...+..++           .+|||+.+|.+..
T Consensus       184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~--------l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~  255 (1283)
T KOG1916|consen  184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS--------LFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS  255 (1283)
T ss_pred             ceeeecccccccceeeeccCCCceeEeeechHHHH--------HHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeec
Confidence            45555667777788888989999999887644331        2445666555543           5899999999999


Q ss_pred             CCcEEEEecC-CC----eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc-
Q 011126          305 DGTVRVWKVI-EH----ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-  378 (493)
Q Consensus       305 Dg~V~iWdl~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-  378 (493)
                      ||.++.|.+. ++    .++...+.+...+..+..+.++......+     ......+-+.......++|....|...- 
T Consensus       256 dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i-----~~w~~~Itttd~nre~k~w~~a~w~Cll~  330 (1283)
T KOG1916|consen  256 DGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSI-----GKWVLRITTTDVNREEKFWAEAPWQCLLD  330 (1283)
T ss_pred             CCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcc-----ceeEEEEecccCCcceeEeeccchhhhhh
Confidence            9999999873 22    23344444443333333333322211111     1111222233334445555554443320 


Q ss_pred             ---cceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC
Q 011126          379 ---KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI  418 (493)
Q Consensus       379 ---~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~  418 (493)
                         ..+.....|.+.|+.+..+.--  .+++.+.+++|.+|.-+.
T Consensus       331 ~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  331 KLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             hcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence               1122223455555554332211  455667888999996543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.75  E-value=0.14  Score=55.47  Aligned_cols=86  Identities=19%  Similarity=0.274  Sum_probs=48.9

Q ss_pred             EeCCC-eEEEEeCCCeEEEEECC-----CCcEEEEec-CC-CcEEEEEEccC--------CCCEEEEEeC-CCeEEEEeC
Q 011126          396 WSKNG-FLLSSSADKTVRLWQVG-----IDRCLRVFS-HN-NYVTSVAFNPV--------DDNYFISGSI-DGKVRIWEV  458 (493)
Q Consensus       396 ~sp~g-~l~sgs~Dg~V~lWd~~-----~~~~~~~~~-h~-~~V~~v~fsp~--------d~~~l~sgs~-Dg~V~IWdl  458 (493)
                      .+||| .+++++.||.++.|.+.     .-+|++.++ |. .+-.|.-++..        --.++++++. +..+++|..
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~  322 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE  322 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence            78999 99999999999999764     334555554 44 33333334321        0123455443 456888877


Q ss_pred             CCCeEEEecCCCCCeEEEEEccCCC
Q 011126          459 RRCQVVDYTDIREIVSAVCYCPDGK  483 (493)
Q Consensus       459 ~~~~~~~~~~~~~~I~sv~~spdG~  483 (493)
                      ...++. +....+.|..|. -|||+
T Consensus       323 a~w~Cl-l~~~~d~v~iV~-p~~~~  345 (1283)
T KOG1916|consen  323 APWQCL-LDKLIDGVQIVG-PHDGE  345 (1283)
T ss_pred             cchhhh-hhhcccceEeec-CCCcc
Confidence            655544 223334455554 44443

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.60  E-value=1.7  Score=49.79  Aligned_cols=76  Identities=14%  Similarity=0.133  Sum_probs=48.0

Q ss_pred             EecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       384 ~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      +.-|..++.+..+.....++.+..-+.+-+|+.........+.    +....+.+ ++..++++..||.+.+||...++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  194 LSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYL----PNGQLESR-DGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcc----cccccCcc-CCceEEEEEecCCEEeeecCCCce
Confidence            3345556666665544444445555667777755444433332    11112266 899999999999999999998755


Q ss_pred             E
Q 011126          464 V  464 (493)
Q Consensus       464 ~  464 (493)
                      +
T Consensus       269 ~  269 (993)
T KOG1983|consen  269 Q  269 (993)
T ss_pred             e
Confidence            3

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=91.60  E-value=17  Score=36.75  Aligned_cols=246  Identities=11%  Similarity=0.066  Sum_probs=105.5

Q ss_pred             eeecccccceeccCCCeEEee-ecCCeEEEEECCCccccccccccceeeeccc-CCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          233 RIIDRHGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasg-s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      +|..--..-+|.++|+.|+.+ ..+|.-.+|-+.-...+...      |..+. .......++|+.+.|+-......|+-
T Consensus        33 ~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q------LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~  106 (386)
T PF14583_consen   33 SHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ------LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRR  106 (386)
T ss_dssp             EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------SS-B-TTT-EE-TTSSEEEEEETTTEEEE
T ss_pred             ccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE------CccCCCCCccceEEecCCCeEEEEECCCeEEE
Confidence            333333446789999766654 44666555543322222221      22222 11224567788888766666678888


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCcee-eeeccCccc---cce----eeeecCCCceEEEcCCCceeecccceE
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI-PIDVDKEKI---DKT----KSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~----~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (493)
                      -|+.+.+....+..+..-.....+..+.....+ .+.......   ...    ..+.......++.++.+..     ...
T Consensus       107 vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-----~~~  181 (386)
T PF14583_consen  107 VDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-----ERK  181 (386)
T ss_dssp             EETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-------EE
T ss_pred             EECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-----cee
Confidence            999998876666666554444455544443332 221111100   000    0011222222333333221     123


Q ss_pred             EEecCCCCEeEEEEeCCC--eEEEEeC---CCe-EEEEECCC-CcEEEEe-c--CCCcEEEEEEccCCCCEEEEEe----
Q 011126          383 EFQGHSSEVLDLSWSKNG--FLLSSSA---DKT-VRLWQVGI-DRCLRVF-S--HNNYVTSVAFNPVDDNYFISGS----  448 (493)
Q Consensus       383 ~~~~h~~~V~~l~~sp~g--~l~sgs~---Dg~-V~lWd~~~-~~~~~~~-~--h~~~V~~v~fsp~d~~~l~sgs----  448 (493)
                      .+..-...+.-+.|+|..  +|+-|-+   +.. -|||-+++ +...+.+ .  ....+..=-|.| +|..|.--+    
T Consensus       182 ~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-DG~~i~y~~~~~~  260 (386)
T PF14583_consen  182 VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-DGSTIWYDSYTPG  260 (386)
T ss_dssp             EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-TSS-EEEEEEETT
T ss_pred             EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-CCCEEEEEeecCC
Confidence            333345567788899987  5554432   221 36675543 2222222 2  334566667888 777655322    


Q ss_pred             -CCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          449 -IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       449 -~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                       .+..|.-+|+.+++...+... ....-+.-++||+++|.=|+|
T Consensus       261 ~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  261 GQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             T--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred             CCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCC
Confidence             244577778887765433222 234566678999998876654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.48  E-value=0.76  Score=30.50  Aligned_cols=31  Identities=26%  Similarity=0.352  Sum_probs=26.1

Q ss_pred             CCEEEEEEccCC---CEEEEEECCCcEEEEecCC
Q 011126          285 GSILTMKFSLDG---QYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       285 ~~I~~l~fspdg---~~Lasgs~Dg~V~iWdl~~  315 (493)
                      ++|.+++|+|+.   .+|+.+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            478999999844   4888888889999999975

It contains a characteristic DLL sequence motif.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.11  E-value=5.9  Score=33.54  Aligned_cols=88  Identities=13%  Similarity=0.179  Sum_probs=63.3

Q ss_pred             eEEEEeCCCeEEEEECC--------CCcEEEEecCCCcEEEEEEccC----CCCEEEEEeCCCeEEEEeCCCCeEEEecC
Q 011126          401 FLLSSSADKTVRLWQVG--------IDRCLRVFSHNNYVTSVAFNPV----DDNYFISGSIDGKVRIWEVRRCQVVDYTD  468 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~--------~~~~~~~~~h~~~V~~v~fsp~----d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~  468 (493)
                      -|+.++.-+.|.|++..        ....+..+.....|++|+-.|-    ....|+.|+ ...|-.||+....-+.++.
T Consensus        12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyke   90 (136)
T PF14781_consen   12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYKE   90 (136)
T ss_pred             eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhhh
Confidence            67778888999999865        3345666777788888866552    345677766 4569999999888887788


Q ss_pred             CCCCeEEEEEcc----CCCEEEEee
Q 011126          469 IREIVSAVCYCP----DGKVRQNSA  489 (493)
Q Consensus       469 ~~~~I~sv~~sp----dG~~l~s~s  489 (493)
                      ..+.|+++.+-.    +...+++|+
T Consensus        91 ~~DGvn~i~~g~~~~~~~~l~ivGG  115 (136)
T PF14781_consen   91 VPDGVNAIVIGKLGDIPSPLVIVGG  115 (136)
T ss_pred             CccceeEEEEEecCCCCCcEEEECc
Confidence            888888887732    344555554

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=91.00  E-value=5.5  Score=39.16  Aligned_cols=109  Identities=14%  Similarity=0.104  Sum_probs=69.5

Q ss_pred             cccccceeccCCCeEEeee-cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC-cEEEEec
Q 011126          236 DRHGSATLKPGDHELTLGQ-RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKV  313 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs-~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-~V~iWdl  313 (493)
                      ...+.++|+||++.|...- ..++|.-|++...............+..+.+.-=.++...+|.+.+++..+| .|.+|+.
T Consensus       163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p  242 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP  242 (307)
T ss_pred             EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence            3445699999998776664 4588888887642111111111112223445566777888888776555554 8999998


Q ss_pred             CCCeeeeeeeccCCCCceEEEeeCCCCceeee
Q 011126          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPI  345 (493)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (493)
                      . ++.+..+..+...+.++.|--.....++..
T Consensus       243 d-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         243 D-GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             C-CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence            7 999999998877677766655544444433

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=90.93  E-value=6.7  Score=42.29  Aligned_cols=70  Identities=14%  Similarity=0.281  Sum_probs=47.2

Q ss_pred             CCCCEeEEEEeC--CC-eEEEEeCCCeEEEEECC---------CCcEEEEec---CC-CcEEEEEEccCCCCEEEEEeCC
Q 011126          387 HSSEVLDLSWSK--NG-FLLSSSADKTVRLWQVG---------IDRCLRVFS---HN-NYVTSVAFNPVDDNYFISGSID  450 (493)
Q Consensus       387 h~~~V~~l~~sp--~g-~l~sgs~Dg~V~lWd~~---------~~~~~~~~~---h~-~~V~~v~fsp~d~~~l~sgs~D  450 (493)
                      ..+.|.++.|..  ++ .+++.+..+.|.+|--.         +...++.+.   |+ .+|....|.+ +|.+++..  +
T Consensus        71 ~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s--G  147 (631)
T PF12234_consen   71 EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS--G  147 (631)
T ss_pred             CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEe--C
Confidence            467788888864  55 77778888888888532         123344442   44 6899999998 77665543  4


Q ss_pred             CeEEEEeCC
Q 011126          451 GKVRIWEVR  459 (493)
Q Consensus       451 g~V~IWdl~  459 (493)
                      +.+.|+|-.
T Consensus       148 Nqlfv~dk~  156 (631)
T PF12234_consen  148 NQLFVFDKW  156 (631)
T ss_pred             CEEEEECCC
Confidence            568888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=90.62  E-value=17  Score=39.14  Aligned_cols=91  Identities=16%  Similarity=0.207  Sum_probs=54.5

Q ss_pred             CC-eEEEEeCC------CeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCC-----eEEEEeCCCCeE
Q 011126          399 NG-FLLSSSAD------KTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQV  463 (493)
Q Consensus       399 ~g-~l~sgs~D------g~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg-----~V~IWdl~~~~~  463 (493)
                      +| +.++|+.+      .+|..||..++.....-.   ...... ++.-  ++.+.+.||.|+     +|..||..+.+.
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W  503 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQW  503 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcCCCCce
Confidence            45 66666644      457788887766543322   111122 3322  678889999887     388899998887


Q ss_pred             EEecCCCCCeEEEEEcc-CCCEEEEeecCC
Q 011126          464 VDYTDIREIVSAVCYCP-DGKVRQNSACNF  492 (493)
Q Consensus       464 ~~~~~~~~~I~sv~~sp-dG~~l~s~s~d~  492 (493)
                      ........+...+.... +++..++|+.++
T Consensus       504 ~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~  533 (571)
T KOG4441|consen  504 TMVAPMTSPRSAVGVVVLGGKLYAVGGFDG  533 (571)
T ss_pred             eEcccCccccccccEEEECCEEEEEecccC
Confidence            76554444444443333 556666776553

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.28  E-value=1.5  Score=40.84  Aligned_cols=73  Identities=12%  Similarity=0.054  Sum_probs=55.0

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeee-------cccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-------AHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-------~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl  313 (493)
                      +.+...+++|++-+.+|.+++||+.+.+..+........+.       .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            45678899999999999999999998776555422222222       4667899999999998777665 578899986


Q ss_pred             C
Q 011126          314 I  314 (493)
Q Consensus       314 ~  314 (493)
                      .
T Consensus        95 ~   95 (219)
T PF07569_consen   95 D   95 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.27  E-value=1  Score=29.87  Aligned_cols=32  Identities=22%  Similarity=0.371  Sum_probs=26.6

Q ss_pred             CcEEEEEEccCCC--CEEEEEeCCCeEEEEeCCC
Q 011126          429 NYVTSVAFNPVDD--NYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       429 ~~V~~v~fsp~d~--~~l~sgs~Dg~V~IWdl~~  460 (493)
                      +.|.++.|+|..+  .+|+..-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3588999998445  6888888889999999995

It contains a characteristic DLL sequence motif.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.27  E-value=2.7  Score=40.08  Aligned_cols=99  Identities=20%  Similarity=0.234  Sum_probs=63.9

Q ss_pred             CEeEEEEeCCC-eEEEEe-CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEe-CCCCe--EE
Q 011126          390 EVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE-VRRCQ--VV  464 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs-~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd-l~~~~--~~  464 (493)
                      .+...++++++ .++... .++.-.||-...+...........++.-.|++ ++.+.+....+...+++. ...++  .+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            68899999999 444433 33444444444444433333444788899999 788777777777777774 33332  22


Q ss_pred             --EecCCCCCeEEEEEccCCCEEEEee
Q 011126          465 --DYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       465 --~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                        .+......|+++.++|||..++.-.
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEE
Confidence              3333333899999999999887654

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.24  E-value=11  Score=34.57  Aligned_cols=90  Identities=18%  Similarity=0.294  Sum_probs=52.9

Q ss_pred             ecCCCceEEEcCCCceeecccceEEEecC-CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-----------
Q 011126          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-----------  426 (493)
Q Consensus       359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-----------  426 (493)
                      .......+...+++.+....+...++.+. -..++-+.|-...++|-.=.+..|..-|..+++.+..+.           
T Consensus       145 msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~  224 (262)
T COG3823         145 MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLD  224 (262)
T ss_pred             eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCcc
Confidence            34444455555666666554444444432 223445555432244444445556666777888776653           


Q ss_pred             --CCCcEEEEEEccCCCCEEEEEe
Q 011126          427 --HNNYVTSVAFNPVDDNYFISGS  448 (493)
Q Consensus       427 --h~~~V~~v~fsp~d~~~l~sgs  448 (493)
                        |.+-.+.|++.|..++++++|-
T Consensus       225 ~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         225 KSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             ccccccccceeecCcCCeEEEecC
Confidence              4557889999996668888874

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=89.98  E-value=11  Score=38.52  Aligned_cols=61  Identities=20%  Similarity=0.343  Sum_probs=32.2

Q ss_pred             CcEEEEEEccCCCCEEEEEe-CCCeEEEEeCCCC---eEEE--ec---------------CCCCCeEEEEEccCCCEEEE
Q 011126          429 NYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRC---QVVD--YT---------------DIREIVSAVCYCPDGKVRQN  487 (493)
Q Consensus       429 ~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~~~---~~~~--~~---------------~~~~~I~sv~~spdG~~l~s  487 (493)
                      .-|+.|.++. |.++|.... .+|.||.||+.+.   +++.  +.               ...+...-|..|-||+.|.+
T Consensus       312 ~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv  390 (461)
T PF05694_consen  312 PLITDILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV  390 (461)
T ss_dssp             -----EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred             CceEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence            4589999999 888877665 5899999999863   3331  11               11223467889999999988


Q ss_pred             eec
Q 011126          488 SAC  490 (493)
Q Consensus       488 ~s~  490 (493)
                      .++
T Consensus       391 TnS  393 (461)
T PF05694_consen  391 TNS  393 (461)
T ss_dssp             E--
T ss_pred             Eee
Confidence            764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=89.81  E-value=11  Score=38.13  Aligned_cols=71  Identities=4%  Similarity=0.020  Sum_probs=37.6

Q ss_pred             cccceeccCCCeEEeee-----------cCC-eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC
Q 011126          238 HGSATLKPGDHELTLGQ-----------RMR-RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs-----------~dg-~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D  305 (493)
                      ...++|.++|+++++-.           ..+ +|.+++-.........   ...+...-...+.|+|.++| +++ +...
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~---~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~   90 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDK---SNVFAEELSMVTGLAVAVGG-VYV-ATPP   90 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcce---eEEeecCCCCccceeEecCC-EEE-eCCC
Confidence            34589999999887742           223 7777765432211110   11222223346788998888 444 4444


Q ss_pred             CcEEEEec
Q 011126          306 GTVRVWKV  313 (493)
Q Consensus       306 g~V~iWdl  313 (493)
                      ...++.+.
T Consensus        91 ~i~~~~d~   98 (367)
T TIGR02604        91 DILFLRDK   98 (367)
T ss_pred             eEEEEeCC
Confidence            33333343

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=89.64  E-value=16  Score=38.53  Aligned_cols=93  Identities=13%  Similarity=0.177  Sum_probs=58.3

Q ss_pred             EEEEeCCC-eEEEEeCCCeEEEEECCC--CcEEEEecCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeCCCCeEE----
Q 011126          393 DLSWSKNG-FLLSSSADKTVRLWQVGI--DRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVV----  464 (493)
Q Consensus       393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~--~~~~~~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl~~~~~~----  464 (493)
                      ...|+|.. .|+.-.....-.+++++.  .+...-++..+.|.|.+|.+ ||+.|+.+ +..=.-+|||-....+.    
T Consensus       117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~qKtL~~Csf  195 (671)
T PF15390_consen  117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQKTLHRCSF  195 (671)
T ss_pred             cccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCchhhhhhCCc
Confidence            45689987 555544444444566653  34445556888999999999 77766654 34446789987644322    


Q ss_pred             -EecCCCCCeEEEEEccCCCEEE
Q 011126          465 -DYTDIREIVSAVCYCPDGKVRQ  486 (493)
Q Consensus       465 -~~~~~~~~I~sv~~spdG~~l~  486 (493)
                       ...+..+.|.+|.-.-|.+..+
T Consensus       196 cPVFdv~~~Icsi~AT~dsqVAv  218 (671)
T PF15390_consen  196 CPVFDVGGYICSIEATVDSQVAV  218 (671)
T ss_pred             ceeecCCCceEEEEEeccceEEE
Confidence             2455556777776555555443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=89.29  E-value=21  Score=34.14  Aligned_cols=183  Identities=11%  Similarity=0.095  Sum_probs=98.2

Q ss_pred             ceeccCCCeEEeeecCC--eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126          241 ATLKPGDHELTLGQRMR--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~  318 (493)
                      +.|..+|.++-+.+..|  .|+.+++.+.+.....     .+.. .--=-.|.... ++...-.=.++...+||..+.+.
T Consensus        50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~-----~l~~-~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV-----PLPP-RYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE-----E-TT-T--EEEEEEET-TEEEEEESSSSEEEEEETTTTEE
T ss_pred             EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE-----ECCc-cccceeEEEEC-CEEEEEEecCCeEEEEccccceE
Confidence            66767888877777766  6788887765432111     0100 00111222222 22222334678899999999988


Q ss_pred             eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-CCCCEeEEEEe
Q 011126          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWS  397 (493)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~s  397 (493)
                      +.++.... ..+.+.  .++.                ..+.......+..+++..+....+......+ .-..++-|.|-
T Consensus       123 ~~~~~y~~-EGWGLt--~dg~----------------~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i  183 (264)
T PF05096_consen  123 IGTFPYPG-EGWGLT--SDGK----------------RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI  183 (264)
T ss_dssp             EEEEE-SS-S--EEE--ECSS----------------CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred             EEEEecCC-cceEEE--cCCC----------------EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence            88876652 333333  1111                1223334455666676666543322111111 12345667776


Q ss_pred             CCC-eEEEEeCCCeEEEEECCCCcEEEEec-------------C---CCcEEEEEEccCCCCEEEEEeCC
Q 011126          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFS-------------H---NNYVTSVAFNPVDDNYFISGSID  450 (493)
Q Consensus       398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-------------h---~~~V~~v~fsp~d~~~l~sgs~D  450 (493)
                       +| ++|=.=....|..-|..+|.++..+.             +   .+-.+.|+++|..+++++||=.=
T Consensus       184 -~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~W  252 (264)
T PF05096_consen  184 -NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLW  252 (264)
T ss_dssp             -TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-
T ss_pred             -cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCC
Confidence             45 55555566778888999999888763             1   34689999999777788887443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.17  E-value=4  Score=38.04  Aligned_cols=63  Identities=13%  Similarity=0.208  Sum_probs=49.4

Q ss_pred             eEEEEeCCCeEEEEECCCCcEEEEe---------------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126          401 FLLSSSADKTVRLWQVGIDRCLRVF---------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~~~~~~~~~---------------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                      +|++-+.+|.+++||+.+++++..-               .....|..+.++. +|.-|++-+ +|..+.|+..-+..+.
T Consensus        24 ~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~L~~W~~  101 (219)
T PF07569_consen   24 YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPDLGCWIR  101 (219)
T ss_pred             EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEeccccceeEE
Confidence            8889999999999999988765433               2346788999997 888777765 5789999988765543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=89.05  E-value=26  Score=34.90  Aligned_cols=69  Identities=13%  Similarity=0.207  Sum_probs=43.2

Q ss_pred             EEecCCCcEEEEEEccC------CCCEEEEEeCCCeEEEEeCCCC-eEE---E-ecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          423 RVFSHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRRC-QVV---D-YTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       423 ~~~~h~~~V~~v~fsp~------d~~~l~sgs~Dg~V~IWdl~~~-~~~---~-~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ..+.+...++.+.|-..      .+.+|++.-..+.|....+... ++.   . +......+..|++.|||.+.++...+
T Consensus       247 ~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~  326 (331)
T PF07995_consen  247 FAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD  326 (331)
T ss_dssp             EEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred             eeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence            34445567788888641      4456766666778888888744 332   2 23455589999999999988876543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.42  E-value=12  Score=40.84  Aligned_cols=70  Identities=20%  Similarity=0.353  Sum_probs=49.7

Q ss_pred             CCEeEEEEe--CCC-eEEEEeCCCeEEEEECCCC--cEE--EEecCCCcEEEEEEccCC--CC---EEEEEeCCCeEEEE
Q 011126          389 SEVLDLSWS--KNG-FLLSSSADKTVRLWQVGID--RCL--RVFSHNNYVTSVAFNPVD--DN---YFISGSIDGKVRIW  456 (493)
Q Consensus       389 ~~V~~l~~s--p~g-~l~sgs~Dg~V~lWd~~~~--~~~--~~~~h~~~V~~v~fsp~d--~~---~l~sgs~Dg~V~IW  456 (493)
                      ..++.|+++  ... +||.++....|.||-....  +..  ....+...|.+|+|-+.+  +.   +|++++..|.+.+|
T Consensus       164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~  243 (717)
T PF08728_consen  164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF  243 (717)
T ss_pred             CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence            467888887  544 7788888888888765431  111  123367789999998732  22   78889999999998


Q ss_pred             eC
Q 011126          457 EV  458 (493)
Q Consensus       457 dl  458 (493)
                      ++
T Consensus       244 ~I  245 (717)
T PF08728_consen  244 KI  245 (717)
T ss_pred             EE
Confidence            88

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=88.40  E-value=37  Score=35.85  Aligned_cols=56  Identities=5%  Similarity=0.147  Sum_probs=38.1

Q ss_pred             eEEEEECCCCcEEEEecCCC-------cEEEEEEc---cCCCC---EEEEEeCCCeEEEEeCCCCeEEE
Q 011126          410 TVRLWQVGIDRCLRVFSHNN-------YVTSVAFN---PVDDN---YFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       410 ~V~lWd~~~~~~~~~~~h~~-------~V~~v~fs---p~d~~---~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                      .|.-.|+.+++.+-.+....       ......+.   +.++.   +++.++.+|.+...|..+++++.
T Consensus       257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W  325 (488)
T cd00216         257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS  325 (488)
T ss_pred             eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence            78899999999988775211       11111111   11333   67888899999999999999874

The alignment model contains an 8-bladed beta-propeller.

>PHA02713 hypothetical protein; Provisional

Probab=88.18  E-value=32  Score=37.01  Aligned_cols=61  Identities=3%  Similarity=0.041  Sum_probs=38.1

Q ss_pred             eEEEEeCC------CeEEEEECCC-CcEE--EEecC-CCcEEEEEEccCCCCEEEEEeCCC--eEEEEeCCCCeEE
Q 011126          401 FLLSSSAD------KTVRLWQVGI-DRCL--RVFSH-NNYVTSVAFNPVDDNYFISGSIDG--KVRIWEVRRCQVV  464 (493)
Q Consensus       401 ~l~sgs~D------g~V~lWd~~~-~~~~--~~~~h-~~~V~~v~fsp~d~~~l~sgs~Dg--~V~IWdl~~~~~~  464 (493)
                      +.+.|+.+      ..|..||..+ .+-.  ..+.. ......+.+   ++.+.++|+.||  .+..||+.+.+..
T Consensus       466 IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        466 IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEeeecceeehhhcCccccccc
Confidence            55556543      2467899887 4433  22222 222233333   789999999998  7888888887655

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=87.95  E-value=35  Score=35.11  Aligned_cols=57  Identities=12%  Similarity=0.221  Sum_probs=42.6

Q ss_pred             eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl  458 (493)
                      ++..=+.||++.+++-+.......+..---...+.+.| .-+.|++++.+..|.-|..
T Consensus       147 ~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  147 FICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             EEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecH
Confidence            78888999999999977655545554333344567888 7778888888888888865

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=87.86  E-value=33  Score=34.69  Aligned_cols=77  Identities=21%  Similarity=0.302  Sum_probs=40.7

Q ss_pred             eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC---CCe-EEEEeCC--CCeEEEecCC--CCCeEEEEEccC
Q 011126          410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGK-VRIWEVR--RCQVVDYTDI--REIVSAVCYCPD  481 (493)
Q Consensus       410 ~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---Dg~-V~IWdl~--~~~~~~~~~~--~~~I~sv~~spd  481 (493)
                      .|.--|+.+++....+.-...+..+.|+|.++.+|+-|-.   +.. -|||-++  .........+  ...+.-=-|.||
T Consensus       169 ~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~D  248 (386)
T PF14583_consen  169 RIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPD  248 (386)
T ss_dssp             EEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TT
T ss_pred             eEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCC
Confidence            4556688888888888888899999999977777777654   221 2556544  3333222222  222333346666


Q ss_pred             CCEEE
Q 011126          482 GKVRQ  486 (493)
Q Consensus       482 G~~l~  486 (493)
                      |..|.
T Consensus       249 G~~i~  253 (386)
T PF14583_consen  249 GSTIW  253 (386)
T ss_dssp             SS-EE
T ss_pred             CCEEE
Confidence            65543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.66  E-value=25  Score=38.23  Aligned_cols=96  Identities=19%  Similarity=0.163  Sum_probs=64.1

Q ss_pred             CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      ...+..+..||+. +|+--...|.|.+-++...+++..+.  ...+...++|.- +.  -++.+.+..+.+.......+.
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg-nd--aVvl~~e~~l~lvgp~gd~V~  292 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG-ND--AVVLSWEVNLMLVGPPGDSVQ  292 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec-CC--ceEEEEeeeEEEEcCCCCccc
Confidence            4567888999988 88888999999999888888877776  334444788876 33  333445555666655444444


Q ss_pred             EecCCCCCeEEEEEccCCCEEEEee
Q 011126          465 DYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       465 ~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .+.++.. +  +.--+||-.+++.+
T Consensus       293 f~yd~t~-~--l~~E~DGVRI~t~t  314 (829)
T KOG2280|consen  293 FYYDETA-I--LSAEVDGVRIITST  314 (829)
T ss_pred             cccCCCc-e--eeeccCeeEEeccc
Confidence            4444433 2  66677887777654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=87.45  E-value=44  Score=35.68  Aligned_cols=78  Identities=10%  Similarity=0.151  Sum_probs=48.2

Q ss_pred             CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEE--EEEccCCCEEE
Q 011126          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA--VCYCPDGKVRQ  486 (493)
Q Consensus       409 g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~s--v~~spdG~~l~  486 (493)
                      +.|.=+|+.+++.+-.+....+...-.+.- .+.+++.++.||.++.+|.++++++........+.+  +.|.-+|+..+
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t-~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv  519 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT-AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYV  519 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEE-CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEE
Confidence            457778888888777665332211111111 456777788899999999999998853333333322  34556886444


Q ss_pred             E
Q 011126          487 N  487 (493)
Q Consensus       487 s  487 (493)
                      +
T Consensus       520 ~  520 (527)
T TIGR03075       520 A  520 (527)
T ss_pred             E
Confidence            3

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.02  E-value=6.7  Score=40.60  Aligned_cols=33  Identities=15%  Similarity=0.397  Sum_probs=26.1

Q ss_pred             CEeEEEEeCCC----eEEEEeCCCeEEEEECCCCcEE
Q 011126          390 EVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCL  422 (493)
Q Consensus       390 ~V~~l~~sp~g----~l~sgs~Dg~V~lWd~~~~~~~  422 (493)
                      .+..++|+|+.    .|+.-+.|.+|||||+...+.+
T Consensus       167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence            46678999975    7888888999999998754433

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=86.77  E-value=13  Score=36.93  Aligned_cols=100  Identities=13%  Similarity=0.196  Sum_probs=56.1

Q ss_pred             CEeEEEEeCCCeEEEEeCCCeEEEEECCCCcE---EEEec-----CCCcEEEEEEccC---CCCEEEEEeCC--------
Q 011126          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC---LRVFS-----HNNYVTSVAFNPV---DDNYFISGSID--------  450 (493)
Q Consensus       390 ~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~---~~~~~-----h~~~V~~v~fsp~---d~~~l~sgs~D--------  450 (493)
                      ..+.|+|.|+|.++.+...|.|++++ ..+..   +..+.     .......++++|.   ++.+.++.+..        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            45789999999556667799999999 33332   22221     3457899999992   23444444421        


Q ss_pred             CeEEEEeCCCC-------eEE--EecC---CCCCeEEEEEccCCCEEEEeec
Q 011126          451 GKVRIWEVRRC-------QVV--DYTD---IREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       451 g~V~IWdl~~~-------~~~--~~~~---~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ..|.-|.+...       +.+  ....   ....-..|.|.|||.+.++.+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence            23444444333       111  1222   3345677999999966655553

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=86.75  E-value=41  Score=34.57  Aligned_cols=83  Identities=12%  Similarity=0.242  Sum_probs=44.0

Q ss_pred             CCCeEEEEECCCCcEEEEecCC---CcEEEEEEc--cCCCCEEEEEeCCCeEEEEeC-CCCe-----EEEecC-------
Q 011126          407 ADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFN--PVDDNYFISGSIDGKVRIWEV-RRCQ-----VVDYTD-------  468 (493)
Q Consensus       407 ~Dg~V~lWd~~~~~~~~~~~h~---~~V~~v~fs--p~d~~~l~sgs~Dg~V~IWdl-~~~~-----~~~~~~-------  468 (493)
                      ...++.+||+.+.+.++++...   ..+.-|.|.  |....-|+.+-...+|..|-- ..++     ++....       
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            4578999999999999999743   345566664  422223555555666655544 4442     332211       


Q ss_pred             ---C-------CCCeEEEEEccCCCEEEEee
Q 011126          469 ---I-------REIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       469 ---~-------~~~I~sv~~spdG~~l~s~s  489 (493)
                         .       ..-|+.|..|.|.++|.+++
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~  330 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSN  330 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEE
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEc
Confidence               1       34589999999999999875

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=85.89  E-value=3.4  Score=44.32  Aligned_cols=81  Identities=15%  Similarity=0.169  Sum_probs=47.2

Q ss_pred             cCCCeEEeeecCCeEEEEECCCcc---cccc--------------ccccce--eeecccCCEEEEEEcc----CCCEEEE
Q 011126          245 PGDHELTLGQRMRRVRVHPVKKQS---RELS--------------SLYTGQ--EFLAHEGSILTMKFSL----DGQYLAS  301 (493)
Q Consensus       245 p~g~~lasgs~dg~V~vwd~~~~~---~~~~--------------~~~~~~--~l~~H~~~I~~l~fsp----dg~~Las  301 (493)
                      ++...++.+..||.+.........   ....              .+....  .-..-.+.+..+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            466778888888888877765411   1100              000000  0001123456666666    6779999


Q ss_pred             EECCCcEEEEecCCCeeeeeeecc
Q 011126          302 GGEDGTVRVWKVIEHERLDGFDVQ  325 (493)
Q Consensus       302 gs~Dg~V~iWdl~~~~~~~~~~~~  325 (493)
                      .+.|+++|+||+.+++++......
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEETT
T ss_pred             EeCCCeEEEEECCCCeEEEEeccc
Confidence            999999999999999997776554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PHA03098 kelch-like protein; Provisional

Probab=85.83  E-value=53  Score=35.00  Aligned_cols=64  Identities=6%  Similarity=0.223  Sum_probs=37.3

Q ss_pred             eEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCC-----CeEEEEeCCCCeEEEecCCCCCeEEE
Q 011126          410 TVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIREIVSAV  476 (493)
Q Consensus       410 ~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~D-----g~V~IWdl~~~~~~~~~~~~~~I~sv  476 (493)
                      .+.+||..+.+-...-.  .. .....+.+   ++.+++.|+.+     ..|.+||+.+.+.......+..+.++
T Consensus       457 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~  528 (534)
T PHA03098        457 IVESYNPVTNKWTELSSLNFPRINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGSL  528 (534)
T ss_pred             eEEEecCCCCceeeCCCCCcccccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccce
Confidence            38889988765433221  11 11122222   56778888765     47899999988766555544444444

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=85.34  E-value=30  Score=34.32  Aligned_cols=184  Identities=13%  Similarity=0.145  Sum_probs=87.9

Q ss_pred             ecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEE-EEEEccCCCEEEEEECCCcEEEEe
Q 011126          235 IDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSIL-TMKFSLDGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       235 ~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~-~l~fspdg~~Lasgs~Dg~V~iWd  312 (493)
                      .+...|.-.-|.+ .-+.+-+.||++.-..+....++...  ....|..-..++. .-.+...+..++--+..|.|+--|
T Consensus       134 i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~--~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~d  211 (342)
T PF06433_consen  134 IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK--STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSAD  211 (342)
T ss_dssp             EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE--EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEE
T ss_pred             ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe--eccccCCCCcccccccceECCCCeEEEEecCCEEEEEe
Confidence            3444453333333 46778888999988888754443321  1112222223332 334444444455568889888888


Q ss_pred             cCCCeee--eeeeccCCCCceEEEeeCCCCceeeeeccCcccccee-----eeecCCCceEEEcCCCceeecccceEEEe
Q 011126          313 VIEHERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK-----SLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       313 l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      +......  ..+.........-.|.+.+. +++.++...+.+....     ...+.....+.+++.+..    +.+..+.
T Consensus       212 lsg~~~~~~~~~~~~t~~e~~~~WrPGG~-Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~----krv~Ri~  286 (342)
T PF06433_consen  212 LSGDSAKFGKPWSLLTDAEKADGWRPGGW-QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH----KRVARIP  286 (342)
T ss_dssp             ETTSSEEEEEEEESS-HHHHHTTEEE-SS-S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT----EEEEEEE
T ss_pred             ccCCcccccCcccccCccccccCcCCcce-eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC----eEEEEEe
Confidence            8655422  12211110000012222221 1222222222111111     012223334555555432    2233333


Q ss_pred             cCCCCEeEEEEeCCC--eEEEE-eCCCeEEEEECCCCcEEEEec
Q 011126          386 GHSSEVLDLSWSKNG--FLLSS-SADKTVRLWQVGIDRCLRVFS  426 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g--~l~sg-s~Dg~V~lWd~~~~~~~~~~~  426 (493)
                      . ..++.+|+.+.+.  +|++. ..++.|.+||..+++.++.+.
T Consensus       287 l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  287 L-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             E-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             C-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            2 2357799999987  66554 468999999999999998886

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=84.98  E-value=8  Score=34.49  Aligned_cols=30  Identities=23%  Similarity=0.432  Sum_probs=25.7

Q ss_pred             CCEeEEEEeCCC-------eEEEEeCCCeEEEEECCC
Q 011126          389 SEVLDLSWSKNG-------FLLSSSADKTVRLWQVGI  418 (493)
Q Consensus       389 ~~V~~l~~sp~g-------~l~sgs~Dg~V~lWd~~~  418 (493)
                      ..|..++|||.|       +|+..+.++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999954       789999999999998654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.28  E-value=0.12  Score=52.38  Aligned_cols=139  Identities=21%  Similarity=0.299  Sum_probs=95.2

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCCcEEEEecCCCeee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHERL  319 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~V~iWdl~~~~~~  319 (493)
                      ..|.|.+..++.++.+..|..||-.+......         .-++....|+|..+|..++ .+-..+.+.+||+.+....
T Consensus        40 ~~w~~e~~nlavaca~tiv~~YD~agq~~le~---------n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq  110 (615)
T KOG2247|consen   40 HRWRPEGHNLAVACANTIVIYYDKAGQVILEL---------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ  110 (615)
T ss_pred             eeEecCCCceehhhhhhHHHhhhhhcceeccc---------CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence            46778888899999999999998654332111         1345667889988887554 4566789999998654310


Q ss_pred             eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (493)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (493)
                       .+...                                                           ..|....  +.|++.
T Consensus       111 -qLE~g-----------------------------------------------------------g~~s~sl--l~wsKg  128 (615)
T KOG2247|consen  111 -QLESG-----------------------------------------------------------GTSSKSL--LAWSKG  128 (615)
T ss_pred             -HHhcc-----------------------------------------------------------CcchHHH--HhhccC
Confidence             00000                                                           0012221  678887


Q ss_pred             C-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCe
Q 011126          400 G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK  452 (493)
Q Consensus       400 g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~  452 (493)
                      . .++.+...+.+.|++..+.+.+...+ |...+++++|.+  .++.+.++.|..
T Consensus       129 ~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd~~  181 (615)
T KOG2247|consen  129 TPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL--EDYVILCDCDNT  181 (615)
T ss_pred             CccccccccccceEEEeccchhhhhhhcccccceeEEEecc--cceeeecCcHHH
Confidence            7 77778888999999999888877777 999999999998  445566555543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.25  E-value=1.9  Score=48.32  Aligned_cols=103  Identities=15%  Similarity=0.094  Sum_probs=70.2

Q ss_pred             CEeEEEEeCCC---eEEEEeCCCeEEEEECCCCc--------EEEEe----cCCCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126          390 EVLDLSWSKNG---FLLSSSADKTVRLWQVGIDR--------CLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (493)
Q Consensus       390 ~V~~l~~sp~g---~l~sgs~Dg~V~lWd~~~~~--------~~~~~----~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (493)
                      +|..+...+++   .++..+.+-.|..||++.-.        +++.-    .....+.++.|+|.-....+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            44555555665   33444456678999987432        12111    14456788999995566677888899999


Q ss_pred             EEeCCCCeE-EEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          455 IWEVRRCQV-VDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       455 IWdl~~~~~-~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +..+.-... +.........++++|+|-|+.+++|-.++
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnG  220 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNG  220 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCC
Confidence            998864433 33446677899999999999999986554

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=83.96  E-value=52  Score=35.53  Aligned_cols=65  Identities=12%  Similarity=0.196  Sum_probs=40.2

Q ss_pred             eEEEEeCCC-----eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC-----eEEEEeCCCCeEEE
Q 011126          401 FLLSSSADK-----TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVD  465 (493)
Q Consensus       401 ~l~sgs~Dg-----~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg-----~V~IWdl~~~~~~~  465 (493)
                      +++.|+.|+     +|..||..+.+....-.-......+.....++.+.+.|+.||     +|..||..+.+...
T Consensus       478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~  552 (571)
T KOG4441|consen  478 IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTE  552 (571)
T ss_pred             EEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceee
Confidence            677777665     377788887765544322222222222222678889999886     57888887766553

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.74  E-value=5.6  Score=41.03  Aligned_cols=51  Identities=12%  Similarity=0.258  Sum_probs=41.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeec
Q 011126          440 DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       440 d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ...|+|.++..|-||+||--..... .+.+....|..|..+.+|+++++.+.
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence            4569999999999999997554433 46778889999999999999887653

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.49  E-value=13  Score=37.96  Aligned_cols=63  Identities=24%  Similarity=0.271  Sum_probs=43.2

Q ss_pred             EEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126          250 LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       250 lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      ++.+...|.+.=|-++.........+    -....++|.+|+|++|.+.||.--.|++|.+.+....
T Consensus        36 qlfavrSggatgvvvkgpndDVpiSf----dm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d   98 (657)
T KOG2377|consen   36 QLFAVRSGGATGVVVKGPNDDVPISF----DMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD   98 (657)
T ss_pred             eEEEEecCCeeEEEEeCCCCCCCcee----eecCCCceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence            33344555666676665443322211    1235679999999999999999999999999987443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=82.49  E-value=51  Score=32.18  Aligned_cols=76  Identities=12%  Similarity=0.172  Sum_probs=51.5

Q ss_pred             EEeCCCeEEEEECCCCcEEEEecC---CCcEEEEEEccC-----CCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCC----
Q 011126          404 SSSADKTVRLWQVGIDRCLRVFSH---NNYVTSVAFNPV-----DDNYFISGSIDGKVRIWEVRRCQVVD-YTDIR----  470 (493)
Q Consensus       404 sgs~Dg~V~lWd~~~~~~~~~~~h---~~~V~~v~fsp~-----d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~----  470 (493)
                      .+..-|.|-++|+. ++.++.+.+   -+..+.|+..|.     .+.+|+---.||+|..+|..+++.+. +.+..    
T Consensus       217 ~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi  295 (336)
T TIGR03118       217 AGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPV  295 (336)
T ss_pred             cCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeE
Confidence            34445789999975 667776753   345567777652     56677766679999999999887663 33222    


Q ss_pred             --CCeEEEEEcc
Q 011126          471 --EIVSAVCYCP  480 (493)
Q Consensus       471 --~~I~sv~~sp  480 (493)
                        ..++.|.|..
T Consensus       296 ~i~GLWgL~fGn  307 (336)
T TIGR03118       296 KVDGLWSLTFGN  307 (336)
T ss_pred             EecCeEEeeeCC
Confidence              3468888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=82.48  E-value=89  Score=35.00  Aligned_cols=63  Identities=14%  Similarity=0.043  Sum_probs=44.6

Q ss_pred             CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec----CCC----------------CCeEEEEEccCCCEEE
Q 011126          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT----DIR----------------EIVSAVCYCPDGKVRQ  486 (493)
Q Consensus       427 h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~----~~~----------------~~I~sv~~spdG~~l~  486 (493)
                      ....|.+|+... -+.+++..-.||+|.++|..+-+.+...    ...                ..+.-++|||.+-.++
T Consensus       258 ~~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v  336 (753)
T PF11635_consen  258 LNKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV  336 (753)
T ss_pred             cCCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence            446788888777 7788999999999999999877554322    111                1234578999988777


Q ss_pred             Eeec
Q 011126          487 NSAC  490 (493)
Q Consensus       487 s~s~  490 (493)
                      .-..
T Consensus       337 ~~~~  340 (753)
T PF11635_consen  337 QIDE  340 (753)
T ss_pred             EEec
Confidence            6543

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=82.17  E-value=95  Score=35.09  Aligned_cols=95  Identities=9%  Similarity=0.160  Sum_probs=60.9

Q ss_pred             EeEEEEeCC-C-eEEEEe----------CCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEE
Q 011126          391 VLDLSWSKN-G-FLLSSS----------ADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (493)
Q Consensus       391 V~~l~~sp~-g-~l~sgs----------~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I  455 (493)
                      |.+..|..+ + +++.|.          ..|.|.|+.+.....+....   -.+.|.++..-  ++++||  +....|++
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrL  852 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLA--GINQSVRL  852 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEE--ecCcEEEE
Confidence            334447666 4 666664          24778888877644444332   45566665543  566665  46788999


Q ss_pred             EeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEee
Q 011126          456 WEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       456 Wdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      |++.+.+.+ .--.+..++.++...-.|..+++|-
T Consensus       853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD  887 (1096)
T KOG1897|consen  853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGD  887 (1096)
T ss_pred             EEccccceehhhhcccCCeEEEEEEecCcEEEEee
Confidence            999988554 3455666777777777777777663

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=82.13  E-value=13  Score=38.05  Aligned_cols=83  Identities=14%  Similarity=0.188  Sum_probs=53.0

Q ss_pred             EEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCC----------------CC
Q 011126          382 HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVD----------------DN  442 (493)
Q Consensus       382 ~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d----------------~~  442 (493)
                      ..+......+.+|+.+|++ +.++...=|.|.|+|+.++..++.++  -...+.-+......                ..
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l  380 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL  380 (415)
T ss_pred             EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence            3444556678999999999 66665566999999999998888775  11111111111101                11


Q ss_pred             -EEEEEeCCCeEEEEeCCCCeEE
Q 011126          443 -YFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       443 -~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                       +++-.-.-|.|.||.++.+..+
T Consensus       381 ~LvIyaprRg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  381 FLVIYAPRRGILEVWSMRQGPRV  403 (415)
T ss_pred             EEEEEeccCCeEEEEecCCCCEE
Confidence             2334556788999999877655

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=81.04  E-value=9.3  Score=39.16  Aligned_cols=88  Identities=19%  Similarity=0.260  Sum_probs=57.9

Q ss_pred             EEEEeCCC-eEEEEeCCCeEEE---EECCC-C----cEEEEe----cCC--CcEEEEEEccC----------CCCEEEEE
Q 011126          393 DLSWSKNG-FLLSSSADKTVRL---WQVGI-D----RCLRVF----SHN--NYVTSVAFNPV----------DDNYFISG  447 (493)
Q Consensus       393 ~l~~sp~g-~l~sgs~Dg~V~l---Wd~~~-~----~~~~~~----~h~--~~V~~v~fsp~----------d~~~l~sg  447 (493)
                      .++.+|++ +|+.+..++.+.+   |+... +    .....+    .+.  ..|+++.|-|-          |...++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            46778888 7777777776665   64411 1    111111    233  58888888663          45789999


Q ss_pred             eCCCeEEEEeCCCCeEEEecCCCCCeEEEEEcc
Q 011126          448 SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP  480 (493)
Q Consensus       448 s~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~sp  480 (493)
                      ..+|.|++|......+....-|..+|..|....
T Consensus        86 ~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   86 TSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             ecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence            999999999885444445556778888887654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=80.56  E-value=61  Score=31.81  Aligned_cols=100  Identities=10%  Similarity=0.146  Sum_probs=55.1

Q ss_pred             CCCCEeEEEEeCCCeEEEEeCCCeEEEEEC-CCCcEEEE----ecCC-CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRV----FSHN-NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       387 h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~-~~~~~~~~----~~h~-~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      -...|..|.|.|++.|......+.|+.=+. ........    +... -.+..++|.+ +..+.|+|+ .|.+ +.....
T Consensus       185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~Dg  261 (302)
T PF14870_consen  185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTL-LVSTDG  261 (302)
T ss_dssp             SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-E-EEESST
T ss_pred             ccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccE-EEeCCC
Confidence            356789999999994433458888888772 21111111    1122 3488999998 777777665 4433 334455


Q ss_pred             CeEE-E---ecCCCCCeEEEEEccCCCEEEEee
Q 011126          461 CQVV-D---YTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       461 ~~~~-~---~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      ++-- +   .......++.|.|.++.+.++.|.
T Consensus       262 GktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~  294 (302)
T PF14870_consen  262 GKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ  294 (302)
T ss_dssp             TSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred             CccceECccccCCCCceEEEEEcCCCceEEECC
Confidence            5422 1   234566789999998888888764

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.22  E-value=20  Score=41.39  Aligned_cols=71  Identities=20%  Similarity=0.349  Sum_probs=51.0

Q ss_pred             CCCCEeEEEEeCCCeEEEEeCCCeEEEEECC----C----CcE-----------------EEEe-cCCCcEEEEEEccCC
Q 011126          387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVG----I----DRC-----------------LRVF-SHNNYVTSVAFNPVD  440 (493)
Q Consensus       387 h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~----~----~~~-----------------~~~~-~h~~~V~~v~fsp~d  440 (493)
                      ....|+|+....+|.+.-++.||  .||.+.    .    .+|                 +..+ .+.++|..|.... .
T Consensus       177 dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-S  253 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-S  253 (1311)
T ss_pred             CCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-c
Confidence            35678899977888666666677  566542    1    111                 1122 3677999999987 7


Q ss_pred             CCEEEEEeCCCeEEEEeCCC
Q 011126          441 DNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       441 ~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      -+++.+-+..|+|++||+..
T Consensus       254 R~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  254 RNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cceeeeeccCceEEEEEccC
Confidence            78899999999999999975

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=80.15  E-value=29  Score=32.46  Aligned_cols=103  Identities=12%  Similarity=0.058  Sum_probs=65.6

Q ss_pred             cccceeccCCCeE-EeeecCCeEEEEECCCccccccccccceeeec---ccC-CEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA---HEG-SILTMKFSLDGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       238 ~~~~~fsp~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~---H~~-~I~~l~fspdg~~Lasgs~Dg~V~iWd  312 (493)
                      .+.++|+.+.+.+ .+-+.+-.|.-||+.-....++.....-.+..   ... .--.++...+|.+.+++-.-++|...|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            3447787776654 44567778888886544433332221111111   011 112344456788888888889999999


Q ss_pred             cCCCeeeeeeeccCCCCceEEEeeCCCC
Q 011126          313 VIEHERLDGFDVQDTDPSCLYFTINHLS  340 (493)
Q Consensus       313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (493)
                      ..+|+.+.+++.+...+++++|--....
T Consensus       240 p~tGK~L~eiklPt~qitsccFgGkn~d  267 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFGGKNLD  267 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEecCCCcc
Confidence            9999999999999888887777544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	493
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-10
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-10
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-10
2h9l_A	329	Wdr5delta23 Length = 329		3e-10
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-10
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-10
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-10
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-07
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-08
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-08
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		8e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-07
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-07
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		5e-07
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		5e-07
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-06
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-06
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		9e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		3e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		9e-06
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		3e-06
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		9e-06
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-06
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-06
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		8e-06
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-05
3mmy_A	368	Structural And Functional Analysis Of The Interacti		3e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		4e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		5e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		7e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		7e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		7e-05
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		9e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-04
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		3e-04
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		3e-04
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		3e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		4e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		4e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-04
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		9e-04
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		9e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 26/209 (12%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
           Q    H  S+  + FS DGQ +AS  +D TV++W              + +   L     
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--------------NRNGQHLQTLTG 342
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
           H S +  +    +     +++  +SD   V L  +  +LL+       GHSS V  +++S
Sbjct: 343 HSSSVWGVAFSPDG----QTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVRGVAFS 394
Query: 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
            +G  + S+S DKTV+LW         +  H++ V  VAF+P DD    S S D  V++W
Sbjct: 395 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLW 453
Query: 457 EVRRCQVVD-YTDIREIVSAVCYCPDGKV 484
             R  Q++   T     V  V + PDG+ 
Sbjct: 454 N-RNGQLLQTLTGHSSSVRGVAFSPDGQT 481

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437
           K  +  + HSS V  +++S +G  + S+S DKTV+LW         +  H++ V  VAF+
Sbjct: 7   KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 66
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKV 484
           P D     S S D  V++W  R  Q++   T     V  V + PDG+ 
Sbjct: 67  P-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT 112

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 85  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 143
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKV 484
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG +
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 187

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 83  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 141
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKV 484
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG +
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 185

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 28/212 (13%)
Query: 264 VKKQSRELSSLYTG----------QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
           +KKQ+ +   LY             + L H   +  +KFS DG+YLA+G  + T +V++V
Sbjct: 34  LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRV 92
Query: 314 IEHE---RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370
            +     RL      + DP  L  + +  S L           ++               
Sbjct: 93  SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI---------RSVCFSPDGKFLATGAE 143
Query: 371 PKVFRLLE----KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF 425
            ++ R+ +    K +   QGH  ++  L +  +G  L+S S D+TVR+W +   +C    
Sbjct: 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203
Query: 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
           S  + VT+VA +P D  Y  +GS+D  VR+W+
Sbjct: 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396
           NH   + P  +D +      +L+K ++   ++  P + R ++  LH+   H+S V  + +
Sbjct: 13  NHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKF 72
Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNN-------------------YVTSVAFN 437
           S +G  L++  +KT ++++V     +   S ++                   Y+ SV F+
Sbjct: 73  SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVV 464
           P D  +  +G+ D  +RIW++   ++V
Sbjct: 133 P-DGKFLATGAEDRLIRIWDIENRKIV 158

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 125
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKVRQNSA 489
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG +  +S+
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 125
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKVRQNSA 489
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG +  +S+
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 125
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKV 484
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG +
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 61  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 119
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKVRQNSA 489
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG +  +S+
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 61  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 119
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKVRQNSA 489
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG +  +S+
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 62  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 120
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKVRQNSA 489
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG +  +S+
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 169

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 66  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 124
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKV 484
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG +
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 168

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 386 GHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY 443
           GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   N 
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 124
Query: 444 FISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKVRQNSA 489
            +SGS D  VRIW+V+  + +       + VSAV +  DG +  +S+
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 78  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 136
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKV 484
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG +
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 180

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKV 484
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG +
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKV 484
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG +
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 60  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 118
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKVRQNSA 489
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG +  +S+
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 167

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 57  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 115
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKVRQNSA 489
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG +  +S+
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 164

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKVRQNSA 489
           N  +SGS D  VRIW+V+    +       + VSAV +  DG +  +S+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKVRQNSA 489
           N  +SGS D  VRIW+V+    +       + VSAV +  DG +  +S+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H   I+++K++ DG ++ S   +    +W VI    +  F++++T  S +    NH S  
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE-NH-SGD 205
Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPK----VFRLLEK-PLHEFQGHSSEVLDLSWS 397
             + VD E +D  K          V+  PK    V+++ EK P  +  GH   +  L ++
Sbjct: 206 GSLGVDVEWVDDDK---------FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256
Query: 398 -KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455
             N  LLS+S D T+R+W  G       F  H+  + S ++  V D+  IS S+DG VR+
Sbjct: 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW--VGDDKVISCSMDGSVRL 314
Query: 456 WEVRR 460
           W +++
Sbjct: 315 WSLKQ 319

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 11/196 (5%)
Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329
           E+ + Y  + F  H   +  ++ + DG  +AS   D TVRVW V   E            
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 330 SCLYF----TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385
            C+ +    + + +S+    +  K        L  S D T  +        L        
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL----MTLV 335
Query: 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY 443
           GH + V  + +   G F+LS + DKT+R+W     RC++   +H ++VTS+ F+     Y
Sbjct: 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP-Y 394
Query: 444 FISGSIDGKVRIWEVR 459
            ++GS+D  V++WE R
Sbjct: 395 VVTGSVDQTVKVWECR 410

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 384 FQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
            +GH+  V D+S+  +G LL+S SAD T++LW      C+R    H++ V+SV+  P  D
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 442 NYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKV 484
            + +S S D  +++WEV+    V  +T  RE V  V    DG +
Sbjct: 206 -HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 53/251 (21%)
Query: 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY 298
           G   L+  D ++  G R   +++    K + E   + TG     H GS+L +++  D + 
Sbjct: 135 GVYCLQYDDQKIVSGLRDNTIKIW--DKNTLECKRILTG-----HTGSVLCLQY--DERV 185
Query: 299 LASGGEDGTVRVWKVIEHERLD--------------------------GFDVQD----TD 328
           + +G  D TVRVW V   E L+                             V D    TD
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 245
Query: 329 PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388
            +     + H + +  +D D + I     +  S D T  V        +        GH 
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDKYI-----VSASGDRTIKVWNTSTCEFVRT----LNGHK 296
Query: 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISG 447
             +  L + ++  ++S S+D T+RLW +    CLRV   H   V  + F   D+   +SG
Sbjct: 297 RGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSG 352
Query: 448 SIDGKVRIWEV 458
           + DGK+++W++
Sbjct: 353 AYDGKIKVWDL 363

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 30/174 (17%)
Query: 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354
           D Q + SG  D T+++W     E             C      H   ++ +  D+  I  
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLE-------------CKRILTGHTGSVLCLQYDERVI-- 186
Query: 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLW 414
              +  SSD T  V       +L   +H    H   VL L ++ NG +++ S D+++ +W
Sbjct: 187 ---ITGSSDSTVRVWDVNTGEMLNTLIH----HCEAVLHLRFN-NGMMVTCSKDRSIAVW 238
Query: 415 QVG--IDRCLR--VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464
            +    D  LR  +  H   V  V F   DD Y +S S D  +++W    C+ V
Sbjct: 239 DMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFV 289

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 27/185 (14%)
Query: 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL 339
              H  ++  M   L  + + SG  D T+RVW +                 CL+  + H+
Sbjct: 195 LYGHTSTVRCMH--LHEKRVVSGSRDATLRVWDI-------------ETGQCLHVLMGHV 239
Query: 340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399
           + +  +  D  ++     +  + D    V  P+     E  LH  QGH++ V  L +   
Sbjct: 240 AAVRCVQYDGRRV-----VSGAYDFMVKVWDPET----ETCLHTLQGHTNRVYSLQFD-G 289
Query: 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
             ++S S D ++R+W V    C+   + +  +TS     + DN  +SG+ D  V+IW+++
Sbjct: 290 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDNILVSGNADSTVKIWDIK 347
Query: 460 RCQVV 464
             Q +
Sbjct: 348 TGQCL 352

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 84/220 (38%), Gaps = 65/220 (29%)
Query: 267 QSRELSSLYTGQ---EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD 323
            S  L +L  GQ   +FL H   +L++ FS D + + SGG D  +RVW V          
Sbjct: 89  HSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV---------- 138
Query: 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD-LTCVVLPPKVFRLLEKPLH 382
                                    K +   T S    +D ++CV   P     L+ P+ 
Sbjct: 139 -------------------------KGECMHTLSRGAHTDWVSCVRFSPS----LDAPV- 168
Query: 383 EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR-VFSHNNYVTSVAFNPVDD 441
                              ++S   D  V++W +   R +  +  H NYVTSV  +P D 
Sbjct: 169 -------------------IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DG 208
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481
           +   S   DG  R+W++ + + +        ++ +C+ P+
Sbjct: 209 SLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPN 248

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 29/199 (14%)
Query: 265 KKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324
           KK  + LS L        H  ++    FS DGQ +AS G D T++V+K    E+L     
Sbjct: 600 KKTIKNLSRLVVR----PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 655
Query: 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384
            + +  C  F+ +  S +     DK    K K    ++                K +H +
Sbjct: 656 HEDEVLCCAFSSDD-SYIATCSADK----KVKIWDSATG---------------KLVHTY 695
Query: 385 QGHSSEV--LDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLR-VFSHNNYVTSVAFNPVD 440
             HS +V     +   N  LL++ S D  ++LW +    C   +F H N V    F+P D
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-D 754
Query: 441 DNYFISGSIDGKVRIWEVR 459
           D    S S DG +R+W+VR
Sbjct: 755 DELLASCSADGTLRLWDVR 773

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 29/199 (14%)
Query: 265 KKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324
           KK  + LS L        H  ++    FS DGQ +AS G D T++V+K    E+L     
Sbjct: 607 KKTIKNLSRLVVR----PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 662
Query: 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384
            + +  C  F+ +  S +     DK    K K    ++                K +H +
Sbjct: 663 HEDEVLCCAFSSDD-SYIATCSADK----KVKIWDSATG---------------KLVHTY 702
Query: 385 QGHSSEV--LDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLR-VFSHNNYVTSVAFNPVD 440
             HS +V     +   N  LL++ S D  ++LW +    C   +F H N V    F+P D
Sbjct: 703 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-D 761
Query: 441 DNYFISGSIDGKVRIWEVR 459
           D    S S DG +R+W+VR
Sbjct: 762 DELLASCSADGTLRLWDVR 780

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 98/222 (44%), Gaps = 48/222 (21%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333
           +YTGQ FL       ++ +  + + L  GG+D  +          +  F     DP  LY
Sbjct: 55  VYTGQGFLN------SVCYDSEKELLLFGGKDTXIN--------GVPLFATSGEDP--LY 98
Query: 334 FTINHLSQLIPID-----VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388
             I H   +  +      V     DKT  + K   L                ++  Q H+
Sbjct: 99  TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSL----------------VYNLQAHN 142
Query: 389 SEVLD---LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNY 443
           + V D   +S+S+N FL ++SADKT++LWQ   D+ ++ FS  HN+ V  +A   VDD +
Sbjct: 143 ASVWDAKVVSFSENKFL-TASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAV--VDDGH 197
Query: 444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKV 484
           FIS S DG +++ +     V+  Y      V  +   P+G +
Sbjct: 198 FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDI 239

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 27/202 (13%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
           + ++K+S DG +L+ G  +G V ++ V    +L           CL +  + LS      
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSG---- 192
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS 406
                  ++ ++                R+    +   QGHSSEV  L+W  +G  L+S 
Sbjct: 193 ------SRSGAIHHHD-----------VRIANHQIGTLQGHSSEVCGLAWRSDGLQLASG 235
Query: 407 A-DKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEVRRC 461
             D  V++W     I +  +  +HN  V +VA+ P   N   +  G++D ++  W     
Sbjct: 236 GNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294
Query: 462 QVVDYTDIREIVSAVCYCPDGK 483
             V+  D    V+++ + P  K
Sbjct: 295 ARVNTVDAGSQVTSLIWSPHSK 316

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 14/178 (7%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
           ++   F+ +GQ +A GG D    ++ +      DG ++  +     +       Q +P  
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG-NMPVSRVLTGHKGYASSCQYVP-- 167
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWS--KNGFLL 403
            D+E    T+ +  S D TCV+      + +     EF  GH+++VL LS +       +
Sbjct: 168 -DQE----TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI 222
Query: 404 SSSADKTVRLWQVGI-DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
           S S D TVRLW + I  R +R +  H   + SV F P D   F +GS DG  R++++R
Sbjct: 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMR 279

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 402 LLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRI 455
           L++ S D+T  LW V   + + +F       H   V S++ N ++ N FISGS D  VR+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 456 WEVRRCQ--VVDYTDIREIVSAVCYCPDGK 483
           W++R     V  Y      +++V + PDG+
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQ 262

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI---EHERLDGFDVQD 326
           +L++  + + F+ H   +L++ FSLD + + S   D T+++W  +   ++   +G +   
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517
Query: 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQ 385
              SC+ F+ N L   I              +  S D T      KV+ L    L     
Sbjct: 518 DWVSCVRFSPNTLQPTI--------------VSASWDKTV-----KVWNLSNCKLRSTLA 558
Query: 386 GHSSEVLDLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF 444
           GH+  V  ++ S +G L +S   D  V LW +   + L     N+ + ++ F+P  + Y+
Sbjct: 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP--NRYW 616
Query: 445 ISGSIDGKVRIWEVRRCQVVD 465
           +  + +  ++IW++    +V+
Sbjct: 617 LCAATEHGIKIWDLESKSIVE 637

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
           T Q F+ H+  ++++        + SG  D T++VW +                 CL   
Sbjct: 99  TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           + H   +SQ+  +  +K   D    +   +D          F++      +F GH+S + 
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
            L+ S +G L++S+  D  + LW +   + +   S  + V S+AF+P  + Y+++ +   
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
            ++++ +    +VD  D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNS 488
               +  ISGS D  +++W ++   +       + VS V   P+ K   +S
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
           T Q F+ H+  ++++        + SG  D T++VW +                 CL   
Sbjct: 99  TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           + H   +SQ+  +  +K   D    +   +D          F++      +F GH+S + 
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
            L+ S +G L++S+  D  + LW +   + +   S  + V S+AF+P  + Y+++ +   
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
            ++++ +    +VD  D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNS 488
               +  ISGS D  +++W ++   +       + VS V   P+ K   +S
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
           T Q F+ H+  ++++        + SG  D T++VW +                 CL   
Sbjct: 93  TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 138
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           + H   +SQ+  +  +K   D    +   +D          F++      +F GH+S + 
Sbjct: 139 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 194
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
            L+ S +G L++S+  D  + LW +   + +   S  + V S+AF+P  + Y+++ +   
Sbjct: 195 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 252
Query: 452 KVRIWEVRRCQVVDYTDIR 470
            ++++ +    +VD  D+R
Sbjct: 253 GIKVFSLDPQYLVD--DLR 269

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 51  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNS 488
               +  ISGS D  +++W ++   +       + VS V   P+ K   +S
Sbjct: 111 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 160

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
           T Q F+ H+  ++++        + SG  D T++VW +                 CL   
Sbjct: 99  TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           + H   +SQ+  +  +K   D    +   +D          F++      +F GH+S + 
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
            L+ S +G L++S+  D  + LW +   + +   S  + V S+AF+P  + Y+++ +   
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
            ++++ +    +VD  D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNS 488
               +  ISGS D  +++W ++   +       + VS V   P+ K   +S
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
           T Q F+ H+  ++++        + SG  D T++VW +                 CL   
Sbjct: 99  TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           + H   +SQ+  +  +K   D    +   +D          F++      +F GH+S + 
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
            L+ S +G L++S+  D  + LW +   + +   S  + V S+AF+P  + Y+++ +   
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
            ++++ +    +VD  D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNS 488
               +  ISGS D  +++W ++   +       + VS V   P+ K   +S
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNS 488
               +  ISGS D  +++W ++   +       + VS V   P+ K   +S
Sbjct: 117 K-KASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 42/210 (20%)
Query: 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354
           D   L SG  D TV +WK+ E E+   F +    P       NH    + +         
Sbjct: 38  DSPVLISGSRDKTVMIWKLYEEEQNGYFGI----PHKALTGHNHFVSDLAL--------- 84
Query: 355 TKSLRKSSDLTCVVLPP---KVFRLLE----KPLHEFQGHSSEVLDLSWSK-NGFLLSSS 406
                  S   C  +     K  RL +         F GH SEV  +++S  N  +LS+ 
Sbjct: 85  -------SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG 137
Query: 407 ADKTVRLWQVGIDRC----LRVFSHNNYVTSVAFNPVDDN---------YFISGSIDGKV 453
           A++ ++LW + +  C        +H+++V+ V ++P+  +         YF S   DG++
Sbjct: 138 AEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196
Query: 454 RIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483
           ++W         +      V+ +   P+GK
Sbjct: 197 KVWNTNFQIRYTFKAHESNVNHLSISPNGK 226

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 385 QGHSSEVLDLSWSKNGF-LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY 443
           Q H+  VLD+ WS +G  + ++S DKT ++W +  ++ +++  H+  V ++ +     NY
Sbjct: 83  QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKA-PNY 141
Query: 444 --FISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481
              ++GS D  ++ W+ R    +    + E     CYC D
Sbjct: 142 SCVMTGSWDKTLKFWDTRSSNPMMVLQLPE----RCYCAD 177

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P    +GHS  V D+  S +G F LS S D T+RLW +      R F  H   V SVAF+
Sbjct: 78  PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 137
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYT----DIREIVSAVCYCPD 481
             D+   +SGS D  +++W      V  YT       E VS V + P+
Sbjct: 138 S-DNRQIVSGSRDKTIKLWNT--LGVCKYTVQDESHSEWVSCVRFSPN 182

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 33/201 (16%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
            H+G +  +K++  G  L SG  D TVRVW + +      F+  ++   CL         
Sbjct: 160 GHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI------- 211
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLP--------------PKVFRLLEKPLH---EF 384
                V+ + I    +  + + L    LP              P VF   E+  +     
Sbjct: 212 -----VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266
Query: 385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNY 443
           +GH + V  +S   N  ++S S D T+ +W V   +CL + S H + + S  ++  +   
Sbjct: 267 RGHMASVRTVSGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKR 324
Query: 444 FISGSIDGKVRIWEVRRCQVV 464
            IS S+D  +RIW++   +++
Sbjct: 325 CISASMDTTIRIWDLENGELM 345

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P    +GHS  V D+  S +G F LS S D T+RLW +      R F  H   V SVAF+
Sbjct: 55  PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 114
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYT----DIREIVSAVCYCPD 481
             D+   +SGS D  +++W      V  YT       E VS V + P+
Sbjct: 115 S-DNRQIVSGSRDKTIKLWNT--LGVCKYTVQDESHSEWVSCVRFSPN 159

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 33/200 (16%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
            H+G +  +K++  G  L SG  D TVRVW + +      F+  ++   CL         
Sbjct: 160 GHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI------- 211
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLP--------------PKVFRLLEKPLH---EF 384
                V+ + I    +  + + L    LP              P VF   E+  +     
Sbjct: 212 -----VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266
Query: 385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNY 443
           +GH + V  +S   N  ++S S D T+ +W V   +CL + S H + + S  ++  +   
Sbjct: 267 RGHXASVRTVSGHGN-IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDH-ERKR 324
Query: 444 FISGSIDGKVRIWEVRRCQV 463
            IS S D  +RIW++   ++
Sbjct: 325 CISASXDTTIRIWDLENGEL 344

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 35/221 (15%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
             PS  Y     L  +  I   K +    +  R                       E  G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
           H+  +    +  +  +++SS D T  LW +    +      H   V S++  P D   F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKV 484
           SG+ D   ++W+VR   C+   +T     ++A+C+ P+G  
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNA 240

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 35/221 (15%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
             PS  Y     L  +  I   K +    +  R                       E  G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
           H+  +    +  +  +++SS D T  LW +    +      H   V S++  P D   F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKV 484
           SG+ D   ++W+VR   C+   +T     ++A+C+ P+G  
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNA 240

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 35/221 (15%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 56  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 115
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
             PS  Y     L  +  I   K +    +  R                       E  G
Sbjct: 116 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 152
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
           H+  +    +  +  +++SS D T  LW +    +      H   V S++  P D   F+
Sbjct: 153 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 211
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKV 484
           SG+ D   ++W+VR   C+   +T     ++A+C+ P+G  
Sbjct: 212 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNA 251

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 35/221 (15%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
             PS  Y     L  +  I   K +    +  R                       E  G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
           H+  +    +  +  +++SS D T  LW +    +      H   V S++  P D   F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKV 484
           SG+ D   ++W+VR   C+   +T     ++A+C+ P+G  
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNA 240

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 35/221 (15%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
             PS  Y     L  +  I   K +    +  R                       E  G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
           H+  +    +  +  +++SS D T  LW +    +      H   V S++  P D   F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKV 484
           SG+ D   ++W+VR   C+   +T     ++A+C+ P+G  
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNA 240

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 29/205 (14%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
           I ++ +  +G YLA G     V++W V + +RL       T  S    +++  S ++   
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM----TSHSARVGSLSWNSYILSSG 205
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS 405
                I                      R+ E  +    GHS EV  L W+ +G  L S 
Sbjct: 206 SRSGHIHHHD-----------------VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 248
Query: 406 SADKTVRLWQVGIDRC----LRVFS-HNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEV 458
             D  V +W           L+ F+ H   V +VA+ P   N   +  G+ D  +RIW V
Sbjct: 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
Query: 459 RRCQVVDYTDIREIVSAVCYCPDGK 483
                +   D    V ++ + P  K
Sbjct: 309 CSGACLSAVDAHSQVCSILWSPHYK 333

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 29/205 (14%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
           I ++ +  +G YLA G     V++W V + +RL       T  S    +++  S ++   
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM----TSHSARVGSLSWNSYILSSG 216
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS 405
                I                      R+ E  +    GHS EV  L W+ +G  L S 
Sbjct: 217 SRSGHIHHHD-----------------VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 259
Query: 406 SADKTVRLWQVGIDRC----LRVFS-HNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEV 458
             D  V +W           L+ F+ H   V +VA+ P   N   +  G+ D  +RIW V
Sbjct: 260 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
Query: 459 RRCQVVDYTDIREIVSAVCYCPDGK 483
                +   D    V ++ + P  K
Sbjct: 320 CSGACLSAVDAHSQVCSILWSPHYK 344

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADK-TVRLWQV-----GIDRCLRVFSHNNYV 431
           EKP+   Q   S+  DL WS N  +++ + D  ++ L+        I+   R  +H++ V
Sbjct: 58  EKPIASLQV-DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV 116
Query: 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461
            +V FN   DN   SG  +G++ IW++ +C
Sbjct: 117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKC 146

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 29/205 (14%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
           I ++ +  +G YLA G     V++W V + +RL       T  S    +++  S ++   
Sbjct: 70  ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM----TSHSARVGSLSWNSYILSSG 125
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS 405
                I                      R+ E  +    GHS EV  L W+ +G  L S 
Sbjct: 126 SRSGHIHHHD-----------------VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 168
Query: 406 SADKTVRLWQV----GIDRCLRVFS-HNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEV 458
             D  V +W      G    L+ F+ H   V +VA+ P   N   +  G+ D  +RIW V
Sbjct: 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
Query: 459 RRCQVVDYTDIREIVSAVCYCPDGK 483
                +   D    V ++ + P  K
Sbjct: 229 CSGACLSAVDAHSQVCSILWSPHYK 253

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 69/190 (36%), Gaps = 57/190 (30%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
            HE ++ ++ F   GQ LAS  +D TVR+W+        G     +DPS  +  I  LS 
Sbjct: 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS--WKCICTLSG 249
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG 400
                                                        HS  + D++W +  G
Sbjct: 250 F--------------------------------------------HSRTIYDIAWCQLTG 265
Query: 401 FLLSSSADKTVRLWQ--VGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSID 450
            L ++  D  +R++Q     D     FS        H+  V  VA+NP +     S S D
Sbjct: 266 ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD 325
Query: 451 GKVRIWEVRR 460
           G+V  W+ +R
Sbjct: 326 GEVAFWKYQR 335

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 379 KPLHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHN 428
           +P    +GH  E   LSW+ N  G+LLS+S D T+ LW +         ID       H 
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
             V  VA++ + ++ F S + D K+ IW+ R 
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 263

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 379 KPLHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHN 428
           +P    +GH  E   LSW+ N  G+LLS+S D T+ LW +         ID       H 
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
             V  VA++ + ++ F S + D K+ IW+ R 
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 267

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 379 KPLHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHN 428
           +P    +GH  E   LSW+ N  G+LLS+S D T+ LW +         ID       H 
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 233
Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
             V  VA++ + ++ F S + D K+ IW+ R 
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 265

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           ++LS S D TV+LW    +  L + F  H ++V  VAFNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           ++LS S D TV+LW    +  L + F  H ++V  VAFNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           ++LS S D TV+LW    +  L + F  H ++V  VAFNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS--KNGFLLSSSADKTVRLWQV---GIDRC 421
           +VLP      ++K +    GH++ VLD++W    +  + S S D TV +W++   G+   
Sbjct: 60  LVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119
Query: 422 LR-----VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           LR     +  H   V  VA++P   N  +S   D  + +W+V
Sbjct: 120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV 161

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           ++LS S D TV+LW    +  L + F  H ++V  VAFNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RCQVVDYTDIREIVSAVCYCPDG 482
           H   VT VA NP  D +  + S+D  V+IW++R    +   +     R  V+A C+ PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RCQVVDYTDIREIVSAVCYCPDG 482
           H   VT VA NP  D +  + S+D  V+IW++R    +   +     R  V+A C+ PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RCQVVDYTDIREIVSAVCYCPDG 482
           H   VT VA NP  D +  + S+D  V+IW++R    +   +     R  V+A C+ PDG
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 386 GHSSEVLDLSWS--KNGFLLSSSADKTVRLWQV---GIDRCLR-----VFSHNNYVTSVA 435
           GH++ VLD++W    +  + S S D TV +W++   G+   LR     +  H   V  VA
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 436 FNPVDDNYFISGSIDGKVRIWEV 458
           ++P   N  +S   D  + +W+V
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDV 161

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 28/199 (14%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC---------LY 333
           H+  + T+    DG    SGG+D +V+VW + +   L  ++   ++ +C         ++
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDL-TCVVLPPK---VFRL-----------LE 378
            +     +++  D  K K         S  + T V   P+    F             ++
Sbjct: 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257
Query: 379 KP--LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434
            P        HS  +  L++S +   FL S S D TV +         R  SH ++VT V
Sbjct: 258 NPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGV 317
Query: 435 AFNPVDDNYFISGSIDGKV 453
           A++P+D + F +   D KV
Sbjct: 318 AWSPLDHSKFTTVGWDHKV 336

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 97/244 (39%), Gaps = 40/244 (16%)
Query: 255 RMRRVRVHPVKKQSRELSS--LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312
           ++  V +H V ++   L    + T +    H   +L M +  D + + S  +DG V VW 
Sbjct: 33  KLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD 92
Query: 313 VIEHERLDGFDVQDT-DPSCLYFT---------INHLSQLIPIDVDKEKIDKTKSLRKSS 362
                +     +  T   +C Y           +++   + P+  DK +    K  +KS 
Sbjct: 93  SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK--KKSV 150
Query: 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF-LLSSSADKTVRLWQVGIDRC 421
            +                      H++ +   S++ +   +L++S D T  LW V   + 
Sbjct: 151 AM----------------------HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL 188
Query: 422 LRVF-SHNNYVTSVAFNPVD-DNYFISGSIDGKVRIWEVRRCQVVDYTDIREI-VSAVCY 478
           L+ F  H   V  +   P +  N F+SG  D K  +W++R  Q V   +  E  V++V Y
Sbjct: 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY 248
Query: 479 CPDG 482
            P G
Sbjct: 249 YPSG 252

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHNNYVTS 433
            +GH  E   LSW+ N  G LLS+S D TV LW +         +D       H+  V  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVR 459
           VA++ + ++ F S + D K+ IW+ R
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTR 260

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHNNYVTS 433
            +GH  E   LSW+ N  G LLS+S D TV LW +         +D       H+  V  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVR 459
           VA++ + ++ F S + D K+ IW+ R
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTR 260

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 352 IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTV 411
           +D  K     +D T  V      + ++K   + Q   ++ + +  + NG ++S S D T+
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 412 RLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
             +++G D  L+  S HN  +T++  NP+     ISGS DG++  W
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEW 362

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 352 IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTV 411
           +D  K     +D T  V      + ++K   + Q   ++ + +  + NG ++S S D T+
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 412 RLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
             +++G D  L+  S HN  +T++  NP+     ISGS DG++  W
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIXEW 362

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	493
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.98
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.98
2pm7_B	297	Protein transport protein SEC13, protein transport	99.98
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.96
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.96
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.95
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.95
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
3jro_A	753	Fusion protein of protein transport protein SEC13	99.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.94
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.94
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.94
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.94
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.94
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.94
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.94
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.93
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.93
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.92
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.92
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.92
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.91
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.91
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.91
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.91
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.91
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.91
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.91
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.91
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.91
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.9
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.9
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.9
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.9
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.9
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.9
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.89
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.89
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.88
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.88
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.88
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.88
3jro_A	753	Fusion protein of protein transport protein SEC13	99.88
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.87
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.86
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.86
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.85
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.85
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.83
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.79
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.79
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.75
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.73
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.73
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.72
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.71
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.69
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.69
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.68
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.68
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.68
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.68
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.67
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.66
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.66
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.65
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.64
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.63
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.63
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.63
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.63
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.61
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.59
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.59
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.56
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.55
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.53
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.53
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.52
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.51
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.5
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.5
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.49
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.49
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.48
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.46
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.43
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.41
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.41
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.41
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.4
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.37
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.36
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.36
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.33
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.3
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.29
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.28
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.25
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.25
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.22
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.18
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.16
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.15
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.15
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.15
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.12
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.08
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.07
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.06
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.06
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.04
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.04
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.03
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.01
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.0
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.98
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.98
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.96
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.96
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.93
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.93
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.91
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.91
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.9
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.86
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.85
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.84
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.83
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.79
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.78
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.77
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.74
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.74
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.73
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.66
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.54
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.51
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.46
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.46
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.46
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.43
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.41
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.37
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.35
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.29
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.28
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.26
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.26
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.25
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.24
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.21
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.19
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.13
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.06
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.05
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.0
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.92
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.87
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.84
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.8
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.75
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.75
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.65
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.56
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.54
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.54
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.47
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.45
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.42
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.42
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.4
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.4
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.35
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.3
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.22
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.2
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.15
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.11
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.02
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.0
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.84
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.81
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.75
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.74
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.71
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.69
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.64
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.61
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.57
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.55
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.54
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.47
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.4
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.38
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.3
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.23
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.17
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.05
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.02
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.95
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.94
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.94
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.6
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	95.57
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.41
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.39
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.35
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.34
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.33
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.31
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.23
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.09
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.96
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.89
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.88
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.83
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	94.54
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.3
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.19
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	93.95
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.77
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	93.63
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.56
3kya_A	496	Putative phosphatase; structural genomics, joint c	93.43
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.36
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	93.25
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	92.67
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.64
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	92.52
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	92.4
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	92.32
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	92.16
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	91.64
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.16
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	90.56
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	90.35
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.25
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.86
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	86.93
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	86.41
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	86.04
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	85.77
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	85.46
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	84.36
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	84.21
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	80.89
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	80.8
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	80.71

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.7e-32  Score=269.49  Aligned_cols=235  Identities=14%  Similarity=0.217  Sum_probs=191.6

Q ss_pred             eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl  313 (493)
                      +...+.+++|+|++ .|++|+.||+|+|||+........   ....+.+|.+.|++|+|+|+|++|++|+.|++|+|||+
T Consensus        81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~---~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B           81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIV---SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEE---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeE---eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            44567889999985 678999999999999986543221   11245689999999999999999999999999999999


Q ss_pred             CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE--ecCCCCE
Q 011126          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF--QGHSSEV  391 (493)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V  391 (493)
                      .+++.+..+..+...+.++.|.+.....               .+.++.++.+.+|+.+...    +...+  ..|...+
T Consensus       157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~---------------l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~~~~~  217 (344)
T 4gqb_B          157 AQQVVLSSYRAHAAQVTCVAASPHKDSV---------------FLSCSEDNRILLWDTRCPK----PASQIGCSAPGYLP  217 (344)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECSSCTTE---------------EEEEETTSCEEEEETTSSS----CEEECC----CCCE
T ss_pred             CCCcEEEEEcCcCCceEEEEecCCCCCc---------------eeeeccccccccccccccc----eeeeeecceeeccc
Confidence            9999999998888888777776655332               2345667788888775432    33333  3466789


Q ss_pred             eEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCC-CEEEEEeCCCeEEEEeCCCCeEEEec
Q 011126          392 LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD-NYFISGSIDGKVRIWEVRRCQVVDYT  467 (493)
Q Consensus       392 ~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~-~~l~sgs~Dg~V~IWdl~~~~~~~~~  467 (493)
                      ++++|+|++  +|++|+.|++|+|||+++++++..+. |...|++++|+| ++ ++|++|+.|++|+|||+.+++++.+.
T Consensus       218 ~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp-~g~~~lasgs~D~~i~vwd~~~~~~~~~~  296 (344)
T 4gqb_B          218 TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP-HSVPFLASLSEDCSLAVLDSSLSELFRSQ  296 (344)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECS-SSSCCEEEEETTSCEEEECTTCCEEEEEC
T ss_pred             eeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEcc-CCCeEEEEEeCCCeEEEEECCCCcEEEEc
Confidence            999999975  88999999999999999999998886 999999999999 66 68999999999999999999999999


Q ss_pred             CCCCCeEEEEEccCCCE-EEEeecCC
Q 011126          468 DIREIVSAVCYCPDGKV-RQNSACNF  492 (493)
Q Consensus       468 ~~~~~I~sv~~spdG~~-l~s~s~d~  492 (493)
                      +|...|++++|+|+|+. |++++.|+
T Consensus       297 ~H~~~V~~v~~sp~~~~llas~s~D~  322 (344)
T 4gqb_B          297 AHRDFVRDATWSPLNHSLLTTVGWDH  322 (344)
T ss_dssp             CCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             CCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence            99999999999999975 55777675

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.7e-32  Score=278.14  Aligned_cols=260  Identities=17%  Similarity=0.243  Sum_probs=215.4

Q ss_pred             CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeEEeeecCCeE
Q 011126          180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV  259 (493)
Q Consensus       180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V  259 (493)
                      ++.|+.+..++++.     +|.+...+                    ....+.+|.+.+.+++|+|++.+|++|+.|++|
T Consensus       120 ~~~l~s~s~Dg~i~-----vwd~~~~~--------------------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i  174 (410)
T 1vyh_C          120 FSVMVSASEDATIK-----VWDYETGD--------------------FERTLKGHTDSVQDISFDHSGKLLASCSADMTI  174 (410)
T ss_dssp             SSEEEEEESSSCEE-----EEETTTCC--------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             CCEEEEEeCCCeEE-----EEECCCCc--------------------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            55666666676666     77654321                    112355677888899999999999999999999


Q ss_pred             EEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCC
Q 011126          260 RVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL  339 (493)
Q Consensus       260 ~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (493)
                      +|||+....       ....+.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+..+...+.++.+.+++ 
T Consensus       175 ~iwd~~~~~-------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g-  246 (410)
T 1vyh_C          175 KLWDFQGFE-------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-  246 (410)
T ss_dssp             CEEETTSSC-------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-
T ss_pred             EEEeCCCCc-------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC-
Confidence            999987533       334578899999999999999999999999999999999999888887776655555443322 


Q ss_pred             CceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC--------------------
Q 011126          340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--------------------  399 (493)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--------------------  399 (493)
                                     ...+.++.++.+.+|+....    +....+.+|...|.+++|+|+                    
T Consensus       247 ---------------~~l~s~s~D~~v~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (410)
T 1vyh_C          247 ---------------TLIASCSNDQTVRVWVVATK----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP  307 (410)
T ss_dssp             ---------------SEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred             ---------------CEEEEEcCCCeEEEEECCCC----ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence                           23345667788888877543    346678899999999999995                    


Q ss_pred             C-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEE
Q 011126          400 G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAV  476 (493)
Q Consensus       400 g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv  476 (493)
                      + +|++|+.|++|++||++++.++..+. |...|++++|+| ++++|++|+.||+|+|||+.+++.+ .+..|...|+++
T Consensus       308 g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l  386 (410)
T 1vyh_C          308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL  386 (410)
T ss_dssp             CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence            5 89999999999999999999998886 999999999999 9999999999999999999988765 577899999999


Q ss_pred             EEccCCCEEEEeecCC
Q 011126          477 CYCPDGKVRQNSACNF  492 (493)
Q Consensus       477 ~~spdG~~l~s~s~d~  492 (493)
                      +|+|++.+|++++.|+
T Consensus       387 ~~~~~~~~l~sgs~D~  402 (410)
T 1vyh_C          387 DFHKTAPYVVTGSVDQ  402 (410)
T ss_dssp             EECSSSSCEEEEETTS
T ss_pred             EEcCCCCEEEEEeCCC
Confidence            9999999999999886

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.9e-31  Score=266.17  Aligned_cols=247  Identities=18%  Similarity=0.237  Sum_probs=205.8

Q ss_pred             ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccccc----------------------------------
Q 011126          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------------------------------  272 (493)
Q Consensus       227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~----------------------------------  272 (493)
                      ....+.+|.+.+.+++|+|++.+|++|+.||+|+|||.........                                  
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            3455778888999999999999999999999999999754332110                                  


Q ss_pred             -------ccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeee
Q 011126          273 -------SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI  345 (493)
Q Consensus       273 -------~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (493)
                             .......+.+|.+.|.++.|+|++.+|++++.|++|++||+.+++.+..+..+...+.++.+.+....     
T Consensus       136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g-----  210 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG-----  210 (354)
T ss_dssp             CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC-----
T ss_pred             eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC-----
Confidence                   01123456789999999999999999999999999999999999998888887776666666554322     


Q ss_pred             eccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEE
Q 011126          346 DVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV  424 (493)
Q Consensus       346 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~  424 (493)
                               ...+.++.++.+.+|+.+..    +++..+.+|...|++++|+|++ +|++++.|++|++||++.++.+..
T Consensus       211 ---------~~l~sgs~Dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~  277 (354)
T 2pbi_B          211 ---------NTFVSGGCDKKAMVWDMRSG----QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI  277 (354)
T ss_dssp             ---------CEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ---------CEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence                     12345667888889887653    4577889999999999999999 999999999999999999988877


Q ss_pred             ec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          425 FS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       425 ~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +.   +...+++++|+| ++.+|++|+.|++|+|||+.+++.+ .+.+|...|++++|+|||++|++++.|+
T Consensus       278 ~~~~~~~~~~~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~  348 (354)
T 2pbi_B          278 YSKESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH  348 (354)
T ss_dssp             ECCTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             EcCCCcccceeEEEEeC-CCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence            75   335789999999 9999999999999999999888766 5788999999999999999999999886

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.9e-32  Score=267.08  Aligned_cols=274  Identities=19%  Similarity=0.205  Sum_probs=223.4

Q ss_pred             hhhhhccccccCC-------CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccc
Q 011126          167 EIEIESRLQESGS-------SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHG  239 (493)
Q Consensus       167 ~~~~~~~lr~v~~-------~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~  239 (493)
                      +|...  |..+.+       ++.|+....++++.     +|.+.....                  .....+.+|...+.
T Consensus        30 ~H~~~--V~~v~~~~~~~~~~~~l~tgs~D~~v~-----vW~~~~~~~------------------~~~~~l~gh~~~v~   84 (321)
T 3ow8_A           30 AHDDA--IWSVAWGTNKKENSETVVTGSLDDLVK-----VWKWRDERL------------------DLQWSLEGHQLGVV   84 (321)
T ss_dssp             SSSSC--EEEEEEC-------CEEEEEETTSCEE-----EEEEETTEE------------------EEEEEECCCSSCEE
T ss_pred             cCCCc--EEEEEEecCCCCCCCEEEEEcCCCCEE-----EEECCCCCe------------------eeeeeeccCCCCEE
Confidence            45544  666655       34677777787777     776532110                  01113556778888


Q ss_pred             cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeee
Q 011126          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~  319 (493)
                      +++|+|++.++++++.|++|+|||+....       ....+..|...+.+++|+|++++|++|+.||.|++|++.+++..
T Consensus        85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~-------~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~  157 (321)
T 3ow8_A           85 SVDISHTLPIAASSSLDAHIRLWDLENGK-------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE  157 (321)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCC-------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee
Confidence            89999999999999999999999987543       23356788999999999999999999999999999999999888


Q ss_pred             eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (493)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (493)
                      ..+..+...+.++.+.+++.                ..+.++.++.+.+|+....    +.+..+.+|...|.+++|+|+
T Consensus       158 ~~~~~~~~~v~~~~~spdg~----------------~lasg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spd  217 (321)
T 3ow8_A          158 YSLDTRGKFILSIAYSPDGK----------------YLASGAIDGIINIFDIATG----KLLHTLEGHAMPIRSLTFSPD  217 (321)
T ss_dssp             EEEECSSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTTT----EEEEEECCCSSCCCEEEECTT
T ss_pred             EEecCCCceEEEEEECCCCC----------------EEEEEcCCCeEEEEECCCC----cEEEEEcccCCceeEEEEcCC
Confidence            77777666666666554431                2345566778888877543    447788999999999999999


Q ss_pred             C-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEE
Q 011126          400 G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAV  476 (493)
Q Consensus       400 g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv  476 (493)
                      + +|++++.|++|+|||++++.++..+. |...|++++|+| ++.+|++|+.|++|+|||+.+++.+ .+..|...|+++
T Consensus       218 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v  296 (321)
T 3ow8_A          218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV  296 (321)
T ss_dssp             SCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE
Confidence            9 99999999999999999999988886 999999999999 9999999999999999999999877 478899999999


Q ss_pred             EEccCCCEEEEeecCCC
Q 011126          477 CYCPDGKVRQNSACNFC  493 (493)
Q Consensus       477 ~~spdG~~l~s~s~d~~  493 (493)
                      +|+|+|++|++++.|++
T Consensus       297 ~~s~~g~~l~s~~~d~~  313 (321)
T 3ow8_A          297 KYNGNGSKIVSVGDDQE  313 (321)
T ss_dssp             EECTTSSEEEEEETTCC
T ss_pred             EECCCCCEEEEEeCCCe
Confidence            99999999999998863

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3e-31  Score=260.10  Aligned_cols=239  Identities=18%  Similarity=0.231  Sum_probs=203.1

Q ss_pred             CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (493)
Q Consensus       229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V  308 (493)
                      ..+.+|.+.+.+++|+|++++|++|+.||+|+|||+....       ....+..|..+|.+++|+|++++|++|+.|++|
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-------eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            3567888999999999999999999999999999987543       234678899999999999999999999999999


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      ++||+.+++.+..+..+...+.++.+.+...                ..+.++.++.+.+|+....   ......+.+|.
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------~l~sgs~D~~v~lWd~~~~---~~~~~~~~~h~  140 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP----------------YVLSGSDDLTVKLWNWENN---WALEQTFEGHE  140 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSS----------------EEEEEETTSCEEEEEGGGT---TEEEEEECCCC
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCC----------------EEEEECCCCeEEEEECCCC---cchhhhhcccC
Confidence            9999999999998888887777777765442                2346677888888876432   12356788999


Q ss_pred             CCEeEEEEeCC-C-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccC-CCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          389 SEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       389 ~~V~~l~~sp~-g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      ..|.+++|+|. + +|++|+.|++|++||++.......+.  |...+..+.|+|. ++.+|++|+.|++|+|||+++++.
T Consensus       141 ~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~  220 (304)
T 2ynn_A          141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC  220 (304)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE
T ss_pred             CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc
Confidence            99999999994 5 99999999999999998877665553  6688999999873 567999999999999999999987


Q ss_pred             E-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          464 V-DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       464 ~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      + .+.+|...|++++|+|++++|++++.|++
T Consensus       221 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~  251 (304)
T 2ynn_A          221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGT  251 (304)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred             ceeeCCCCCCEEEEEECCCCCEEEEEcCCCe
Confidence            7 57889999999999999999999998863

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.9e-31  Score=271.52  Aligned_cols=236  Identities=20%  Similarity=0.308  Sum_probs=207.5

Q ss_pred             CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (493)
Q Consensus       229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V  308 (493)
                      ..+.+|...+.+++|+|++.+|++|+.||+|+|||+.+..       ....+.+|.+.|++++|+|++++|++|+.|++|
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i  174 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGHTDSVQDISFDHSGKLLASCSADMTI  174 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            3467888999999999999999999999999999987543       334688999999999999999999999999999


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      +|||+.+++.+..+..+...+.++.+.+++.                ..+.++.++.+.+|+....    .++..+.+|.
T Consensus       175 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~----------------~l~s~s~D~~i~~wd~~~~----~~~~~~~~h~  234 (410)
T 1vyh_C          175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGD----------------HIVSASRDKTIKMWEVQTG----YCVKTFTGHR  234 (410)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSS----------------EEEEEETTSEEEEEETTTC----CEEEEEECCS
T ss_pred             EEEeCCCCceeEEEcCCCCCEEEEEEeCCCC----------------EEEEEeCCCeEEEEECCCC----cEEEEEeCCC
Confidence            9999999998888888777777777665432                2345677888999987643    4577889999


Q ss_pred             CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCC--------------------CCEEEE
Q 011126          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVD--------------------DNYFIS  446 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d--------------------~~~l~s  446 (493)
                      ..|.+++|+|++ +|++|+.|++|++||+.++.+...+. |...|.+++|+| +                    +.+|++
T Consensus       235 ~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~l~s  313 (410)
T 1vyh_C          235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP-ESSYSSISEATGSETKKSGKPGPFLLS  313 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECC-SCGGGGGGGCCSCC-------CCEEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcC-cccccchhhhccccccccCCCCCEEEE
Confidence            999999999999 99999999999999999999988885 999999999999 4                    679999


Q ss_pred             EeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          447 GSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       447 gs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      |+.|++|++||+++++.+ .+.+|...|++++|+|+|++|++++.|+
T Consensus       314 gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~  360 (410)
T 1vyh_C          314 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK  360 (410)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred             EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            999999999999999877 5788999999999999999999999875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.8e-31  Score=262.78  Aligned_cols=237  Identities=18%  Similarity=0.259  Sum_probs=200.3

Q ss_pred             eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (493)
Q Consensus       232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW  311 (493)
                      ..+...+.+++|+|++.+|++|+.|+.|++|++......   ......+.+|.+.|.++.|++++. |++++.|++|++|
T Consensus        94 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~w  169 (340)
T 1got_B           94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN---VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW  169 (340)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS---CEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred             ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc---ceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEE
Confidence            334556777999999999999999999999998765322   123346789999999999998875 8899999999999


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      |+.+++.+..+..+...+.++.+.++.                ...+.++.++.+.+|+....    +++..+.+|...|
T Consensus       170 d~~~~~~~~~~~~h~~~v~~~~~~~~~----------------~~l~sg~~d~~v~~wd~~~~----~~~~~~~~h~~~v  229 (340)
T 1got_B          170 DIETGQQTTTFTGHTGDVMSLSLAPDT----------------RLFVSGACDASAKLWDVREG----MCRQTFTGHESDI  229 (340)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTS----------------SEEEEEETTSCEEEEETTTC----SEEEEECCCSSCE
T ss_pred             ECCCCcEEEEEcCCCCceEEEEECCCC----------------CEEEEEeCCCcEEEEECCCC----eeEEEEcCCcCCE
Confidence            999999988888777766666665533                12345667888888887643    4567889999999


Q ss_pred             eEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCC---CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-Ee
Q 011126          392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY  466 (493)
Q Consensus       392 ~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~---~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~  466 (493)
                      ++++|+|++ +|++|+.|++|+|||+++++.+..+.|.   ..|++++|+| ++++|++|+.||.|++||+.+++.+ .+
T Consensus       230 ~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~  308 (340)
T 1got_B          230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcEeeEe
Confidence            999999999 9999999999999999999988888654   4799999999 9999999999999999999988776 57


Q ss_pred             cCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          467 TDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       467 ~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      .+|...|++++|+|+|++|++++.|++
T Consensus       309 ~~h~~~v~~~~~s~dg~~l~s~s~D~~  335 (340)
T 1got_B          309 AGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             ecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence            899999999999999999999998863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.6e-30  Score=259.09  Aligned_cols=236  Identities=19%  Similarity=0.332  Sum_probs=196.3

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (493)
                      ...+.+|...+.+++|+|++++|++|+.||+|+||+.....       ....+..|...|.+++|+|++++|++|+.|+.
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  120 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-------KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-------EEEEEECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-------cceEeecCCccEEEEEECCCCCEEEEEeCCCe
Confidence            34567788899999999999999999999999999987543       23457789999999999999999999999999


Q ss_pred             EEEEecCCCe----eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126          308 VRVWKVIEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (493)
Q Consensus       308 V~iWdl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (493)
                      |++|++.+..    ....+..+...+.++.+.+..                 ..+.++.++.+.+|+....    +++..
T Consensus       121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------------~l~s~s~d~~i~~wd~~~~----~~~~~  179 (340)
T 1got_B          121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-----------------QIVTSSGDTTCALWDIETG----QQTTT  179 (340)
T ss_dssp             EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-----------------EEEEEETTSCEEEEETTTT----EEEEE
T ss_pred             EEEEECccCCCcceeEEEecCCCccEEEEEECCCC-----------------cEEEEECCCcEEEEECCCC----cEEEE
Confidence            9999997653    334444454444444443322                 1345667888888887643    34678


Q ss_pred             EecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126          384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       384 ~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~  461 (493)
                      +.+|...|.+++|+|++ +|++|+.|++|++||++++.++..+. |...|++++|+| ++++|++|+.||+|+|||++++
T Consensus       180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT
T ss_pred             EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCC
Confidence            88999999999999999 99999999999999999999998886 999999999999 9999999999999999999998


Q ss_pred             eEEEecC---CCCCeEEEEEccCCCEEEEeecCC
Q 011126          462 QVVDYTD---IREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       462 ~~~~~~~---~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +.+....   +...|++++|+|+|++|++|+.|+
T Consensus       259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~  292 (340)
T 1got_B          259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF  292 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEEEccCCcccceEEEEECCCCCEEEEECCCC
Confidence            8764333   335799999999999999998875

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.3e-31  Score=260.17  Aligned_cols=238  Identities=17%  Similarity=0.269  Sum_probs=201.2

Q ss_pred             ceeeeecccccceeccC----CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC
Q 011126          230 AMARIIDRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~----g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D  305 (493)
                      ....|.+.|.+++|+|+    +.+|++|+.|++|+||++......     ....+.+|...|.+++|+|++.+|++++.|
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-----~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D  101 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-----LQWSLEGHQLGVVSVDISHTLPIAASSSLD  101 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-----EEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-----eeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence            44568899999999875    668999999999999998644321     223578999999999999999999999999


Q ss_pred             CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      ++|++||+.+++.+..+..+...+.++.+.++..                ..+.++.++.+.+|+....    +....+.
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~----------------~l~~g~~dg~v~i~~~~~~----~~~~~~~  161 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ----------------YLATGTHVGKVNIFGVESG----KKEYSLD  161 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSS----------------EEEEECTTSEEEEEETTTC----SEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCC----------------EEEEEcCCCcEEEEEcCCC----ceeEEec
Confidence            9999999999999988887777777777665442                2234556677777766542    3456778


Q ss_pred             cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      .|...|.+++|+|++ +|++++.|++|++||+++++++..+. |...|++++|+| ++++|++|+.||+|+|||+++++.
T Consensus       162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~  240 (321)
T 3ow8_A          162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANL  240 (321)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCE
T ss_pred             CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcce
Confidence            899999999999999 99999999999999999999999886 899999999999 999999999999999999998877


Q ss_pred             E-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          464 V-DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       464 ~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      + .+.+|...|++++|+|+|++|++++.|++
T Consensus       241 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~  271 (321)
T 3ow8_A          241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDKS  271 (321)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence            6 57889999999999999999999998763

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.6e-31  Score=259.09  Aligned_cols=242  Identities=19%  Similarity=0.261  Sum_probs=204.3

Q ss_pred             cccCceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126          226 KKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (493)
Q Consensus       226 ~~~~~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (493)
                      .....+.+|.+.+.+++|+|++ ++|++|+.|++|++|++.......  ......+.+|...|++++|+|++++|++|+.
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF--GVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE--EEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc--cccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            3345678899999999999975 899999999999999986433211  1234568899999999999999999999999


Q ss_pred             CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                      |++|+|||+.+++.+..+..+...+.++.+.+..                ...+.++.++.+.+|+.+     .+.+..+
T Consensus        86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~----------------~~l~s~s~D~~i~vwd~~-----~~~~~~~  144 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA----------------SMIISGSRDKTIKVWTIK-----GQCLATL  144 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS----------------CEEEEEETTSCEEEEETT-----SCEEEEE
T ss_pred             CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC----------------CEEEEEeCCCeEEEEECC-----CCeEEEE
Confidence            9999999999999988888877777666665433                234566778888888764     3557788


Q ss_pred             ecCCCCEeEEEEeCC------C-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEE
Q 011126          385 QGHSSEVLDLSWSKN------G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~------g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IW  456 (493)
                      .+|...|.+++|+|.      + +|++++.|++|++||+++.+....+. |...|++++|+| ++++|++|+.||+|+||
T Consensus       145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iw  223 (319)
T 3frx_A          145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLW  223 (319)
T ss_dssp             CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEE
T ss_pred             eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEE
Confidence            999999999999984      3 79999999999999999998888775 999999999999 99999999999999999


Q ss_pred             eCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          457 EVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       457 dl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      |+.+++.+....+...|.+++|+|+|.+|++++.+
T Consensus       224 d~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~  258 (319)
T 3frx_A          224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT  258 (319)
T ss_dssp             ETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT
T ss_pred             ECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC
Confidence            99999988665667899999999999999887654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.6e-31  Score=262.74  Aligned_cols=242  Identities=14%  Similarity=0.197  Sum_probs=192.8

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      ...|...+.+++|+|++.++ +++.||+|+|||+........   ......+|.+.|++|+|+|++++|++|+.|++|+|
T Consensus        90 ~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~---~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i  165 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLV---NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV  165 (357)
T ss_dssp             EEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CC---CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             cCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEE---EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            34566778889999998655 567899999999876543221   11235689999999999999999999999999999


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      ||+.+++.+..+..+...+.++.+.+.....+               +..+.++.+.+|+.+......  ...+..|...
T Consensus       166 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~---------------~s~~~dg~v~~wd~~~~~~~~--~~~~~~~~~~  228 (357)
T 4g56_B          166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF---------------LSCGEDGRILLWDTRKPKPAT--RIDFCASDTI  228 (357)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTCSSCE---------------EEEETTSCEEECCTTSSSCBC--BCCCTTCCSC
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEccCCCcee---------------eeeccCCceEEEECCCCceee--eeeecccccc
Confidence            99999999999988887777777765543322               344567788888876433211  1223457788


Q ss_pred             EeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 011126          391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT  467 (493)
Q Consensus       391 V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~  467 (493)
                      +++++|+|++  +|++|+.|+.|+|||+++++++..+. |...|++++|+|...++|++|+.||+|+|||+++++++...
T Consensus       229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~  308 (357)
T 4g56_B          229 PTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL  308 (357)
T ss_dssp             EEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             ccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence            9999999985  88999999999999999999988886 89999999999933478999999999999999999999888


Q ss_pred             CCCCCeEEEEEcc-CCCEEEEeecCCC
Q 011126          468 DIREIVSAVCYCP-DGKVRQNSACNFC  493 (493)
Q Consensus       468 ~~~~~I~sv~~sp-dG~~l~s~s~d~~  493 (493)
                      +|...|++|+|+| |+++|++++.|++
T Consensus       309 ~H~~~V~~vafsP~d~~~l~s~s~Dg~  335 (357)
T 4g56_B          309 SHRDFVTGVAWSPLDHSKFTTVGWDHK  335 (357)
T ss_dssp             CCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEcCCCe
Confidence            9999999999999 8999999998863

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.98  E-value=1.5e-30  Score=256.97  Aligned_cols=281  Identities=15%  Similarity=0.206  Sum_probs=217.4

Q ss_pred             hhhhhccccccCC----CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccce
Q 011126          167 EIEIESRLQESGS----SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSAT  242 (493)
Q Consensus       167 ~~~~~~~lr~v~~----~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~  242 (493)
                      ||...  |..+.+    ++.|+....++++.     +|.+.....               .....+..+.+|...+.+++
T Consensus        15 gH~~~--V~~l~~~~~~~~~l~s~s~D~~v~-----~W~~~~~~~---------------~~~~~~~~~~~h~~~v~~~~   72 (319)
T 3frx_A           15 GHNGW--VTSLATSAGQPNLLLSASRDKTLI-----SWKLTGDDQ---------------KFGVPVRSFKGHSHIVQDCT   72 (319)
T ss_dssp             CCSSC--EEEEEECSSCTTEEEEEETTSEEE-----EEEEEEETT---------------EEEEEEEEEECCSSCEEEEE
T ss_pred             cccce--EEEEEccCCCccEEEEecCCccEE-----EecCCCCCc---------------cccccceEEeCCcccEEEEE
Confidence            55554  555544    35677788787777     787543211               01122345667888888999


Q ss_pred             eccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeee
Q 011126          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF  322 (493)
Q Consensus       243 fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~  322 (493)
                      |+|++.+|++|+.|++|+|||+....       ..+.+.+|...|.+++|+|++.+|++|+.|++|++||+. ++.+..+
T Consensus        73 ~s~dg~~l~s~s~D~~v~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~  144 (319)
T 3frx_A           73 LTADGAYALSASWDKTLRLWDVATGE-------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL  144 (319)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEE
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCCCC-------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEE
Confidence            99999999999999999999987543       334688999999999999999999999999999999996 4455566


Q ss_pred             eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-e
Q 011126          323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F  401 (493)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~  401 (493)
                      ..+...+..+.+.+....          .......+.++.++.+.+|+.....    ....+.+|...|.+++|+|++ +
T Consensus       145 ~~h~~~v~~~~~~~~~~~----------~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~sp~g~~  210 (319)
T 3frx_A          145 LGHNDWVSQVRVVPNEKA----------DDDSVTIISAGNDKMVKAWNLNQFQ----IEADFIGHNSNINTLTASPDGTL  210 (319)
T ss_dssp             CCCSSCEEEEEECCC----------------CCEEEEEETTSCEEEEETTTTE----EEEEECCCCSCEEEEEECTTSSE
T ss_pred             eccCCcEEEEEEccCCCC----------CCCccEEEEEeCCCEEEEEECCcch----hheeecCCCCcEEEEEEcCCCCE
Confidence            555555555555443211          0112245667788889999876543    356788999999999999999 9


Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-e--------cCCCCC
Q 011126          402 LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y--------TDIREI  472 (493)
Q Consensus       402 l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~--------~~~~~~  472 (493)
                      |++++.|++|+|||+.+++++..+.+...|.+++|+| ++.+|++++.+ .+++|++.....+. +        ..+...
T Consensus       211 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (319)
T 3frx_A          211 IASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP-NRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPH  288 (319)
T ss_dssp             EEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECS-SSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCC
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcC-CCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcc
Confidence            9999999999999999999999999888999999999 99999988755 59999999877653 2        124567


Q ss_pred             eEEEEEccCCCEEEEeecCCC
Q 011126          473 VSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       473 I~sv~~spdG~~l~s~s~d~~  493 (493)
                      +.+++|+|||++|++++.|++
T Consensus       289 v~~~~~spdg~~l~sg~~Dg~  309 (319)
T 3frx_A          289 AVSLAWSADGQTLFAGYTDNV  309 (319)
T ss_dssp             EEEEEECTTSSEEEEEETTSC
T ss_pred             eeEEEECCCCCEEEEeecCce
Confidence            999999999999999998863

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.98  E-value=1.3e-30  Score=255.43  Aligned_cols=261  Identities=18%  Similarity=0.255  Sum_probs=206.0

Q ss_pred             CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeEEeeecCCeE
Q 011126          180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV  259 (493)
Q Consensus       180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V  259 (493)
                      |+.|+....++++.     +|.+....                    .+..+..|...+.+++|+|++++|++|+.|++|
T Consensus        25 ~~~l~s~~~dg~v~-----lWd~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A           25 EPWVLTTLYSGRVE-----LWNYETQV--------------------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             SSEEEEEETTSEEE-----EEETTTTE--------------------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             CCEEEEEcCCCcEE-----EEECCCCc--------------------eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            66677777776666     77654321                    112344455667789999999999999999999


Q ss_pred             EEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC-eeeeeeeccCCCCceEEEeeCC
Q 011126          260 RVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH-ERLDGFDVQDTDPSCLYFTINH  338 (493)
Q Consensus       260 ~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~-~~~~~~~~~~~~~~~~~~~~~~  338 (493)
                      +|||+....       ....+.+|.+.|++++|+|++++|++|+.|++|++||+.++ .....+..+...+.++.|.+..
T Consensus        80 ~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~  152 (304)
T 2ynn_A           80 RVFNYNTGE-------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD  152 (304)
T ss_dssp             EEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTC
T ss_pred             EEEECCCCc-------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCC
Confidence            999987554       23467899999999999999999999999999999999887 4445566666666666665533


Q ss_pred             CCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC--CC-eEEEEeCCCeEEEEE
Q 011126          339 LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK--NG-FLLSSSADKTVRLWQ  415 (493)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--~g-~l~sgs~Dg~V~lWd  415 (493)
                      ..               ..+.++.++.+.+|+.....   .......+|...|..++|+|  ++ +|++++.|++|+|||
T Consensus       153 ~~---------------~l~sgs~D~~v~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd  214 (304)
T 2ynn_A          153 PS---------------TFASGCLDRTVKVWSLGQST---PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD  214 (304)
T ss_dssp             TT---------------EEEEEETTSEEEEEETTCSS---CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEE
T ss_pred             CC---------------EEEEEeCCCeEEEEECCCCC---ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEe
Confidence            22               23456778888888875322   11223346778899999987  45 999999999999999


Q ss_pred             CCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCC--EEEEeecC
Q 011126          416 VGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGK--VRQNSACN  491 (493)
Q Consensus       416 ~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~--~l~s~s~d  491 (493)
                      +++++++..+. |...|++++|+| ++.+|++|+.||+|+|||+.+++++. +..+...+++++|+|+|.  ++++|+.+
T Consensus       215 ~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~  293 (304)
T 2ynn_A          215 YQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN  293 (304)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT
T ss_pred             CCCCccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC
Confidence            99999999887 999999999999 99999999999999999999998874 677888999999999985  56776654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.98  E-value=2e-30  Score=253.30  Aligned_cols=240  Identities=19%  Similarity=0.258  Sum_probs=188.2

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV  308 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V  308 (493)
                      +.+|.+.+.+++|+|+|++||+|+.|++|+||++.....     ....++.+|.+.|++++|+|  ++++|++|+.|++|
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            456778888999999999999999999999999864321     23456889999999999986  48999999999999


Q ss_pred             EEEecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126          309 RVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (493)
Q Consensus       309 ~iWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (493)
                      +|||+.+++  .+..+..+...+.++.|.+....              ...+.++.++.+.+|+......  .....+.+
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g--------------~~l~s~s~d~~v~~wd~~~~~~--~~~~~~~~  143 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG--------------PMLLVASSDGKVSVVEFKENGT--TSPIIIDA  143 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTSEEEEEEBCSSSC--BCCEEEEC
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC--------------cEEEEEECCCcEEEEEecCCCc--eeeeeeec
Confidence            999998774  33444455555566666554211              1234556677788876643211  11356789


Q ss_pred             CCCCEeEEEEeCC-------------C-eEEEEeCCCeEEEEECCCCc----EEEEec-CCCcEEEEEEccCC---CCEE
Q 011126          387 HSSEVLDLSWSKN-------------G-FLLSSSADKTVRLWQVGIDR----CLRVFS-HNNYVTSVAFNPVD---DNYF  444 (493)
Q Consensus       387 h~~~V~~l~~sp~-------------g-~l~sgs~Dg~V~lWd~~~~~----~~~~~~-h~~~V~~v~fsp~d---~~~l  444 (493)
                      |...|.+++|+|+             + +|++|+.|++|+|||++++.    ++..+. |...|++++|+| +   +.+|
T Consensus       144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp-~~~~~~~l  222 (297)
T 2pm7_B          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYM  222 (297)
T ss_dssp             CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEE
T ss_pred             ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC-CCCCceEE
Confidence            9999999999996             4 89999999999999998765    455554 999999999999 6   4899


Q ss_pred             EEEeCCCeEEEEeCCCCe----EEEe--cCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          445 ISGSIDGKVRIWEVRRCQ----VVDY--TDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       445 ~sgs~Dg~V~IWdl~~~~----~~~~--~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ++|+.|++|+|||+.+..    ....  ..|...|++++|+|+|++|++++.|+
T Consensus       223 as~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~  276 (297)
T 2pm7_B          223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN  276 (297)
T ss_dssp             EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS
T ss_pred             EEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC
Confidence            999999999999998642    1222  56788999999999999999999876

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=7.5e-31  Score=265.57  Aligned_cols=276  Identities=17%  Similarity=0.231  Sum_probs=214.8

Q ss_pred             ccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeE
Q 011126          174 LQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHEL  250 (493)
Q Consensus       174 lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~l  250 (493)
                      |..+.+   ++.|+.+..++++.     +|.+...+                    ....+..|...+.+++|+|++++|
T Consensus        69 V~~~~~sp~~~~l~s~s~D~~v~-----iWd~~~~~--------------------~~~~~~~h~~~v~~~~~s~~g~~l  123 (380)
T 3iz6_a           69 VYSLDWTPEKNWIVSASQDGRLI-----VWNALTSQ--------------------KTHAIKLHCPWVMECAFAPNGQSV  123 (380)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEE-----EEETTTTE--------------------EEEEEECCCTTCCCCEECTTSSEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEE-----EEECCCCc--------------------cceEEecCCCCEEEEEECCCCCEE
Confidence            555544   67788888787777     88754321                    112334566678889999999999


Q ss_pred             EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCCCeeeeeeec-----
Q 011126          251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDV-----  324 (493)
Q Consensus       251 asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~-----  324 (493)
                      ++|+.|+.|+||++...............+.+|.+.|.++.|.|+ +.+|++|+.|++|++||+.+++.+..+..     
T Consensus       124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~  203 (380)
T 3iz6_a          124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG  203 (380)
T ss_dssp             EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred             EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence            999999999999997644333333444567899999999999996 45799999999999999999988766632     


Q ss_pred             cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE
Q 011126          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL  403 (493)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~  403 (493)
                      +...+.++.+.+.               .....+.++.++.+.+|+.+..   .+++..+.+|...|++++|+|++ +|+
T Consensus       204 h~~~v~~~~~~~~---------------~~~~l~sgs~D~~v~~wd~~~~---~~~~~~~~~h~~~v~~v~~~p~~~~l~  265 (380)
T 3iz6_a          204 HTADVLSLSINSL---------------NANMFISGSCDTTVRLWDLRIT---SRAVRTYHGHEGDINSVKFFPDGQRFG  265 (380)
T ss_dssp             CCSCEEEEEECSS---------------SCCEEEEEETTSCEEEEETTTT---CCCCEEECCCSSCCCEEEECTTSSEEE
T ss_pred             CccCeEEEEeecC---------------CCCEEEEEECCCeEEEEECCCC---CcceEEECCcCCCeEEEEEecCCCeEE
Confidence            2222222222211               1223456778888999987532   24577889999999999999999 999


Q ss_pred             EEeCCCeEEEEECCCCcEEEEecC--------CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-e----cCCC
Q 011126          404 SSSADKTVRLWQVGIDRCLRVFSH--------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y----TDIR  470 (493)
Q Consensus       404 sgs~Dg~V~lWd~~~~~~~~~~~h--------~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~----~~~~  470 (493)
                      +|+.|++|+|||++++.++..+..        ...|++++|+| ++++|++|+.||.|+|||+.+++.+. +    ..|.
T Consensus       266 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~  344 (380)
T 3iz6_a          266 TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHE  344 (380)
T ss_dssp             EECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCC
T ss_pred             EEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCC
Confidence            999999999999999999888752        23489999999 99999999999999999999887663 3    5789


Q ss_pred             CCeEEEEEccCCCEEEEeecCCC
Q 011126          471 EIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       471 ~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      ..|++++|+|||++|++|+.|++
T Consensus       345 ~~v~~l~~s~dg~~l~sgs~D~~  367 (380)
T 3iz6_a          345 GRISCLGLSSDGSALCTGSWDKN  367 (380)
T ss_dssp             CCCCEEEECSSSSEEEEECTTSC
T ss_pred             CceEEEEECCCCCEEEEeeCCCC
Confidence            99999999999999999998863

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=7.3e-30  Score=254.46  Aligned_cols=260  Identities=17%  Similarity=0.189  Sum_probs=200.3

Q ss_pred             cccCceeeeeccccccee-----cc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE
Q 011126          226 KKLGAMARIIDRHGSATL-----KP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL  299 (493)
Q Consensus       226 ~~~~~~~~~~~~~~~~~f-----sp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L  299 (493)
                      .....+.+|.+.+.+++|     ++ ++.+|++|+.|++|+||++...............+.+|...|++++|+|++.+|
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            344567788899999998     66 899999999999999999875432211122345678999999999999999999


Q ss_pred             EEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCc--------eeeeeccCcccc------------------
Q 011126          300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ--------LIPIDVDKEKID------------------  353 (493)
Q Consensus       300 asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~------------------  353 (493)
                      ++|+.|++|++||+.+++.+..+..+...+.++.|.+++...        +..++.......                  
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~  171 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS  171 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEEC
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeec
Confidence            999999999999999999999998888888888887665321        222221110000                  


Q ss_pred             ------------ceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEEC-CCC
Q 011126          354 ------------KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GID  419 (493)
Q Consensus       354 ------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~-~~~  419 (493)
                                  ....+.++.++.+.+|+..     .+....+.+|...|.+++|+|+| +|++|+.|++|+|||+ ...
T Consensus       172 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-----~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~  246 (343)
T 2xzm_R          172 PIMKSANKVQPFAPYFASVGWDGRLKVWNTN-----FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT  246 (343)
T ss_dssp             CCCCSCSCCCSSCCEEEEEETTSEEEEEETT-----TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred             cccccccccCCCCCEEEEEcCCCEEEEEcCC-----CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence                        0123445566777777632     34456788999999999999999 9999999999999999 455


Q ss_pred             cEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE---Eec-----------CCCCCeEEEEEccCCCEE
Q 011126          420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DYT-----------DIREIVSAVCYCPDGKVR  485 (493)
Q Consensus       420 ~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~---~~~-----------~~~~~I~sv~~spdG~~l  485 (493)
                      .....+.+...|++++|+| ++.+++++ .|+.|++||+.+++..   .+.           +|...|++++|+|+|++|
T Consensus       247 ~~~~~~~~~~~v~~v~~sp-~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  324 (343)
T 2xzm_R          247 YPQREFDAGSTINQIAFNP-KLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL  324 (343)
T ss_dssp             SCSEEEECSSCEEEEEECS-SSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred             ccceeecCCCcEEEEEECC-CCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence            5666666778899999999 88877655 5888999999876532   222           577889999999999999


Q ss_pred             EEeecCC
Q 011126          486 QNSACNF  492 (493)
Q Consensus       486 ~s~s~d~  492 (493)
                      ++|+.|+
T Consensus       325 ~sg~~Dg  331 (343)
T 2xzm_R          325 FAGFTDG  331 (343)
T ss_dssp             EEEETTS
T ss_pred             EEecCCc
Confidence            9999875

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=2e-29  Score=248.80  Aligned_cols=256  Identities=14%  Similarity=0.223  Sum_probs=195.5

Q ss_pred             ceeeeecccccceeccC-CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126          230 AMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V  308 (493)
                      ++.+|.+.|.+++|+|+ +++||+|+.|++|+||++.......  ....+.+.+|...|.+++|+|++++|++|+.|+.|
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~--~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc--ceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            57789999999999998 5899999999999999987654322  22345688999999999999999999999999999


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCC--------ceeeeeccCcc------------c---------cceeeee
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLS--------QLIPIDVDKEK------------I---------DKTKSLR  359 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------------~---------~~~~~~~  359 (493)
                      ++|+.....................+.+....        .+..++.....            +         .....+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence            99999888877666655444443333322211        11111111000            0         0111233


Q ss_pred             cCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcc
Q 011126          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP  438 (493)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp  438 (493)
                      ++.+..+.+|+....    +.+..+.+|...|++|+|+|++ +|++|+.|++|+|||+++.+++..+.+...|+++.|+|
T Consensus       191 ~~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~  266 (340)
T 4aow_A          191 CGWDKLVKVWNLANC----KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP  266 (340)
T ss_dssp             EETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred             EcCCCEEEEEECCCC----ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCC
Confidence            445556666665442    3467788999999999999999 99999999999999999999999999889999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeEEE----------ecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          439 VDDNYFISGSIDGKVRIWEVRRCQVVD----------YTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       439 ~d~~~l~sgs~Dg~V~IWdl~~~~~~~----------~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                       ++. +++++.|+.|+|||++++..+.          ...|...|++++|+|||++|++|+.|++
T Consensus       267 -~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~  329 (340)
T 4aow_A          267 -NRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL  329 (340)
T ss_dssp             -SSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC
T ss_pred             -CCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence             665 5566779999999999887652          2357889999999999999999998864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=1.8e-29  Score=271.47  Aligned_cols=324  Identities=15%  Similarity=0.180  Sum_probs=223.4

Q ss_pred             ceeeeecCCCceeEEccCCCchhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhh---
Q 011126          146 ACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRK---  219 (493)
Q Consensus       146 ~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~---  219 (493)
                      ...++++.+++....-.    +|...  |..+..   |+.|+....++++.     +|.+...+......+.++...   
T Consensus        40 ~v~l~~~~~~~~~~~~~----~h~~~--v~~~~~spdg~~lasg~~d~~v~-----lWd~~~~~~~~~~~~~~~~~~v~~  108 (611)
T 1nr0_A           40 SVYTVPVGSLTDTEIYT----EHSHQ--TTVAKTSPSGYYCASGDVHGNVR-----IWDTTQTTHILKTTIPVFSGPVKD  108 (611)
T ss_dssp             EEEEEETTCSSCCEEEC----CCSSC--EEEEEECTTSSEEEEEETTSEEE-----EEESSSTTCCEEEEEECSSSCEEE
T ss_pred             EEEEecCCCcccCeEec----CCCCc--eEEEEECCCCcEEEEEeCCCCEE-----EeECCCCcceeeEeecccCCceEE
Confidence            46788888776544211    33333  444433   88899998888877     777643221111111111111   


Q ss_pred             ---------------------hccccc--cccCceeeeecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccc
Q 011126          220 ---------------------VKRGWL--KKLGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLY  275 (493)
Q Consensus       220 ---------------------~k~~w~--~~~~~~~~~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~  275 (493)
                                           ....|.  .....+.+|...+.+++|+|++. .|++|+.|++|++|+.....       
T Consensus       109 v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-------  181 (611)
T 1nr0_A          109 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-------  181 (611)
T ss_dssp             EEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-------
T ss_pred             EEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-------
Confidence                                 112232  12334677888889999999997 59999999999999976432       


Q ss_pred             cceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeee-------ccCCCCceEEEeeCCCCc-------
Q 011126          276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD-------VQDTDPSCLYFTINHLSQ-------  341 (493)
Q Consensus       276 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-------  341 (493)
                      ....+.+|.+.|++++|+|+|++||+|+.|++|++||+.+++.+..+.       .+...+.++.|.+++...       
T Consensus       182 ~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~  261 (611)
T 1nr0_A          182 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK  261 (611)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC
Confidence            334678999999999999999999999999999999999998877764       455566666666544211       


Q ss_pred             -eeeeeccCccccc-------------------eeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-
Q 011126          342 -LIPIDVDKEKIDK-------------------TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-  400 (493)
Q Consensus       342 -~~~~~~~~~~~~~-------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-  400 (493)
                       +..++........                   ...+..+.++.+.+|+...    .++...+.+|...|++++|+|+| 
T Consensus       262 ~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~----~~~~~~~~gh~~~v~~l~~spdg~  337 (611)
T 1nr0_A          262 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL----GSIDQVRYGHNKAITALSSSADGK  337 (611)
T ss_dssp             EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT----TEEEEEECCCSSCEEEEEECTTSS
T ss_pred             eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC----CCcceEEcCCCCCEEEEEEeCCCC
Confidence             1111111111000                   0011222333444443322    12456678999999999999999 


Q ss_pred             eEEEEeCCCeEEEEECCCCcEEEEe-------------------------------------------------------
Q 011126          401 FLLSSSADKTVRLWQVGIDRCLRVF-------------------------------------------------------  425 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~~~~~~~~~-------------------------------------------------------  425 (493)
                      +|++++.|++|++||+.++.+...+                                                       
T Consensus       338 ~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~  417 (611)
T 1nr0_A          338 TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL  417 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEE
T ss_pred             EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEE
Confidence            9999999999999999876543321                                                       


Q ss_pred             ----------------------------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE--EecCCCCCeEE
Q 011126          426 ----------------------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSA  475 (493)
Q Consensus       426 ----------------------------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~--~~~~~~~~I~s  475 (493)
                                                  .|...+++++|+| ++++|++|+.|++|+|||+.++++.  ....|...|++
T Consensus       418 ~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~  496 (611)
T 1nr0_A          418 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS  496 (611)
T ss_dssp             EECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEE
T ss_pred             EEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEE
Confidence                                        1234578899999 9999999999999999999887542  34678999999


Q ss_pred             EEEccCCCEEEEeecCC
Q 011126          476 VCYCPDGKVRQNSACNF  492 (493)
Q Consensus       476 v~~spdG~~l~s~s~d~  492 (493)
                      ++|+|||++|++++.|.
T Consensus       497 v~fspdg~~las~s~d~  513 (611)
T 1nr0_A          497 VAFSNNGAFLVATDQSR  513 (611)
T ss_dssp             EEECTTSSEEEEEETTS
T ss_pred             EEECCCCCEEEEEcCCC
Confidence            99999999999998875

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=1.5e-29  Score=252.78  Aligned_cols=249  Identities=16%  Similarity=0.179  Sum_probs=185.7

Q ss_pred             ccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcc----ccccccccceeeecccCCEEEEEEccCCCE
Q 011126          223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS----RELSSLYTGQEFLAHEGSILTMKFSLDGQY  298 (493)
Q Consensus       223 ~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~----~~~~~~~~~~~l~~H~~~I~~l~fspdg~~  298 (493)
                      .|........++...+.+++|+|+|++|++++ |+++++|+.....    ..............|...|.+++|+|++ +
T Consensus        18 ~w~~~~~~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~   95 (344)
T 4gqb_B           18 EWNLPPNAPACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G   95 (344)
T ss_dssp             -----CCSCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred             ccCCCCCCcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence            44433344455666778899999999999887 6777777632110    0000011111234577889999999985 6


Q ss_pred             EEEEECCCcEEEEecCCCeeeeeee----ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126          299 LASGGEDGTVRVWKVIEHERLDGFD----VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (493)
Q Consensus       299 Lasgs~Dg~V~iWdl~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (493)
                      |++|+.||+|+|||+.+++.+..+.    .|...+.++.|.+++                ...+.++.++.+.+|+... 
T Consensus        96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg----------------~~l~sgs~d~~i~iwd~~~-  158 (344)
T 4gqb_B           96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG----------------TQAVSGSKDICIKVWDLAQ-  158 (344)
T ss_dssp             EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS----------------SEEEEEETTSCEEEEETTT-
T ss_pred             EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC----------------CEEEEEeCCCeEEEEECCC-
Confidence            8899999999999999887654433    344555555554433                2335667788888888764 


Q ss_pred             eecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeC
Q 011126          375 RLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSI  449 (493)
Q Consensus       375 ~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~  449 (493)
                         .+++..+.+|...|++++|+|++  +|++++.|++|+|||+++++++..+.   |...+++++|+|.++++|++|+.
T Consensus       159 ---~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~  235 (344)
T 4gqb_B          159 ---QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE  235 (344)
T ss_dssp             ---TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred             ---CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc
Confidence               34578899999999999999987  78999999999999999999888874   66789999999967789999999


Q ss_pred             CCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCC-CEEEEeecCCC
Q 011126          450 DGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG-KVRQNSACNFC  493 (493)
Q Consensus       450 Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG-~~l~s~s~d~~  493 (493)
                      ||+|+|||+++++.+ .+..|...|++++|+|+| ++|++++.|++
T Consensus       236 dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~  281 (344)
T 4gqb_B          236 NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS  281 (344)
T ss_dssp             TSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred             CCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe
Confidence            999999999988766 578899999999999998 57888887753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.97  E-value=2.3e-29  Score=251.18  Aligned_cols=268  Identities=16%  Similarity=0.176  Sum_probs=200.4

Q ss_pred             CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccCCCeEEeeecCCeE
Q 011126          180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV  259 (493)
Q Consensus       180 ~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V  259 (493)
                      |+.|+....++++.     +|.+....                 +........+|...+.+++|+|++++||+|+.|++|
T Consensus        28 g~~las~~~D~~i~-----iw~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A           28 GTLLASCGGDRRIR-----IWGTEGDS-----------------WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             SSCEEEEETTSCEE-----EEEEETTE-----------------EEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCEEEEEcCCCeEE-----EEEcCCCc-----------------ceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            77888888887777     77643221                 000111123567778889999999999999999999


Q ss_pred             EEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee---eeeeeccCCCCceEEEee
Q 011126          260 RVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER---LDGFDVQDTDPSCLYFTI  336 (493)
Q Consensus       260 ~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~---~~~~~~~~~~~~~~~~~~  336 (493)
                      +||+......     .....+.+|...|++++|+|++++|++|+.|++|++||+.++..   +..+..+...+.++.|.+
T Consensus        86 ~iw~~~~~~~-----~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           86 CIWKKNQDDF-----ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP  160 (345)
T ss_dssp             EEEEECCC-E-----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred             EEEEccCCCe-----EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence            9999865432     23346789999999999999999999999999999999987643   344555555555555554


Q ss_pred             CCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEE
Q 011126          337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQ  415 (493)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd  415 (493)
                      +..                ..+.++.++.+.+|+......  .+...+.+|...|++|+|+|++ +|++++.|++|+|||
T Consensus       161 ~~~----------------~l~s~s~d~~i~~w~~~~~~~--~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          161 SQE----------------LLASASYDDTVKLYREEEDDW--VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             SSS----------------CEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCC----------------EEEEEeCCCcEEEEEecCCCE--EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence            432                233455666677775432111  2356788999999999999999 999999999999999


Q ss_pred             CCCC---------------cEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe--------EE--EecC
Q 011126          416 VGID---------------RCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--------VV--DYTD  468 (493)
Q Consensus       416 ~~~~---------------~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~--------~~--~~~~  468 (493)
                      ....               .++..+.  |...|++++|+| ++.+|++++.|+.|++|++....        +.  ....
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  301 (345)
T 3fm0_A          223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA  301 (345)
T ss_dssp             EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTS
T ss_pred             cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccc
Confidence            6321               3344443  889999999999 99999999999999999987542        11  2357


Q ss_pred             CCCCeEEEEEccCCC-EEEEeecCCC
Q 011126          469 IREIVSAVCYCPDGK-VRQNSACNFC  493 (493)
Q Consensus       469 ~~~~I~sv~~spdG~-~l~s~s~d~~  493 (493)
                      |...|++|+|+|++. +|++++.|++
T Consensus       302 h~~~V~~v~~~p~~~~~laS~s~Dg~  327 (345)
T 3fm0_A          302 HSQDVNCVAWNPKEPGLLASCSDDGE  327 (345)
T ss_dssp             SSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             ccCcEeEeEEeCCCceEEEEcCCCCc
Confidence            899999999999985 8889888763

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=4e-29  Score=268.82  Aligned_cols=236  Identities=18%  Similarity=0.248  Sum_probs=195.7

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC----
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----  305 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----  305 (493)
                      .+.+|.+.+.+++|+|+|++||+|+.|++|+|||+......     ....+.+|.+.|.+++|+|+|++|++++.+    
T Consensus        54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-----~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~  128 (611)
T 1nr0_A           54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-----LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF  128 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-----EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred             EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-----eeEeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence            35567788899999999999999999999999998643321     123578899999999999999999999875    


Q ss_pred             CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      +.|++||  .++....+..+...+.++.|.+....               ..+.++.++.+.+|+....    +.+..+.
T Consensus       129 ~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~---------------~l~s~s~D~~v~lwd~~~~----~~~~~l~  187 (611)
T 1nr0_A          129 GHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPF---------------RIISGSDDNTVAIFEGPPF----KFKSTFG  187 (611)
T ss_dssp             EEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSC---------------EEEEEETTSCEEEEETTTB----EEEEEEC
T ss_pred             eEEEEee--CCCCcceecCCCCCceEEEECCCCCe---------------EEEEEeCCCeEEEEECCCC----eEeeeec
Confidence            4677787  45566667777777777777654422               2456677888888876543    3467789


Q ss_pred             cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe--------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEE
Q 011126          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~--------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IW  456 (493)
                      +|...|.+++|+|+| +|++++.|++|+|||+.+++++..+        .|.+.|++++|+| ++++|++++.|++|+||
T Consensus       188 ~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lW  266 (611)
T 1nr0_A          188 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIW  266 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred             cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEE
Confidence            999999999999999 9999999999999999999998887        5999999999999 99999999999999999


Q ss_pred             eCCCCeEEE--------------------------------------------ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          457 EVRRCQVVD--------------------------------------------YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       457 dl~~~~~~~--------------------------------------------~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      |+.+++.+.                                            +.+|...|++++|+|||++|++++.|.
T Consensus       267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~  346 (611)
T 1nr0_A          267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG  346 (611)
T ss_dssp             ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            999876432                                            246888999999999999999999875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=6.3e-30  Score=252.14  Aligned_cols=241  Identities=18%  Similarity=0.215  Sum_probs=185.1

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV  308 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V  308 (493)
                      +.+|.+.+.+++|+|+|++||+|+.|++|+||++......     ....+.+|.+.|++++|+|  ++++|++|+.|++|
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-----~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v   83 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-----LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV   83 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-----EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-----EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence            4568888999999999999999999999999998654321     2346789999999999986  48999999999999


Q ss_pred             EEEecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126          309 RVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (493)
Q Consensus       309 ~iWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (493)
                      +|||+.++.  ....+..+...+.++.|.+.....+              .+.++.++.+.+|+...... ......+.+
T Consensus        84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~--------------lasgs~D~~i~lwd~~~~~~-~~~~~~~~~  148 (316)
T 3bg1_A           84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLI--------------LACGSSDGAISLLTYTGEGQ-WEVKKINNA  148 (316)
T ss_dssp             EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSC--------------EEEECSSSCEEEEEECSSSC-EEECCBTTS
T ss_pred             EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcE--------------EEEEcCCCCEEEEecCCCCC-cceeeeecc
Confidence            999998864  4555666777777888776542222              23455666777776542110 011234567


Q ss_pred             CCCCEeEEEEeCC-----------------C-eEEEEeCCCeEEEEECCCC---cEEEEec-CCCcEEEEEEccCCC---
Q 011126          387 HSSEVLDLSWSKN-----------------G-FLLSSSADKTVRLWQVGID---RCLRVFS-HNNYVTSVAFNPVDD---  441 (493)
Q Consensus       387 h~~~V~~l~~sp~-----------------g-~l~sgs~Dg~V~lWd~~~~---~~~~~~~-h~~~V~~v~fsp~d~---  441 (493)
                      |...|.+++|+|+                 + +|++|+.|++|+|||+...   .++..+. |...|++++|+| ++   
T Consensus       149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp-~~~~~  227 (316)
T 3bg1_A          149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP-SIGLP  227 (316)
T ss_dssp             SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC-CSSCS
T ss_pred             ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC-CCCCC
Confidence            9999999999997                 4 8999999999999999755   3555554 999999999999 65   


Q ss_pred             -CEEEEEeCCCeEEEEeCCCC---e--EEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          442 -NYFISGSIDGKVRIWEVRRC---Q--VVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       442 -~~l~sgs~Dg~V~IWdl~~~---~--~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                       .+|++|+.||+|+||++.+.   +  ...+..|...|++++|+|+|++|++++.|+
T Consensus       228 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~  284 (316)
T 3bg1_A          228 TSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN  284 (316)
T ss_dssp             CCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred             CceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence             89999999999999999762   1  122456788999999999999999999876

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.97  E-value=3.4e-29  Score=250.02  Aligned_cols=243  Identities=20%  Similarity=0.241  Sum_probs=188.9

Q ss_pred             cCceeeeec-ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126          228 LGAMARIID-RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (493)
Q Consensus       228 ~~~~~~~~~-~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (493)
                      +..+.+|.+ .+..++|+|+|++||+|+.|++|+||++........    .....+|...|++++|+|+|++|++|+.|+
T Consensus         8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----SVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----EEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----eeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            344556666 677899999999999999999999999865432111    112368999999999999999999999999


Q ss_pred             cEEEEecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          307 TVRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       307 ~V~iWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                      +|+||++..+.  .+..+..+...+.++.|.+++.                ..+.++.++.+.+|+...... ...+..+
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~----------------~l~s~s~D~~v~iwd~~~~~~-~~~~~~~  146 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN----------------LLATCSRDKSVWVWEVDEEDE-YECVSVL  146 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEEECTTSC-EEEEEEE
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC----------------EEEEEECCCeEEEEECCCCCC-eEEEEEe
Confidence            99999998764  4566666666666666655431                234556677787776543211 1235667


Q ss_pred             ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE--EEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC--LRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~--~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      .+|...|.+++|+|++ +|++++.|++|++||+..+..  ...+. |...|++++|+| ++++|++|+.|++|+|||+..
T Consensus       147 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~  225 (345)
T 3fm0_A          147 NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYL  225 (345)
T ss_dssp             CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEEC
T ss_pred             cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEecccc
Confidence            8999999999999999 999999999999999987753  34554 999999999999 999999999999999999632


Q ss_pred             C---------------eEE-Eec-CCCCCeEEEEEccCCCEEEEeecCC
Q 011126          461 C---------------QVV-DYT-DIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       461 ~---------------~~~-~~~-~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      .               +.+ .+. .|...|++++|+|++..|++++.|.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~  274 (345)
T 3fm0_A          226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD  274 (345)
T ss_dssp             TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS
T ss_pred             CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC
Confidence            1               112 233 3788999999999999999998775

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=1.7e-28  Score=249.46  Aligned_cols=232  Identities=22%  Similarity=0.336  Sum_probs=182.1

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      .+.+++|+|+|++|++|+.|+.|+|||+....       ....+.+|...|++++|+|++++|++|+.|++|++||+.++
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~  197 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  197 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-------EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence            36679999999999999999999999987543       23457899999999999999999999999999999999999


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc---cceEEEecCCCCEeE
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE---KPLHEFQGHSSEVLD  393 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~V~~  393 (493)
                      +....+... ..+..+.+.+...               ...+.++.++.+.+|+........   .......+|...|.+
T Consensus       198 ~~~~~~~~~-~~v~~~~~~~~~~---------------~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  261 (393)
T 1erj_A          198 QCSLTLSIE-DGVTTVAVSPGDG---------------KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS  261 (393)
T ss_dssp             EEEEEEECS-SCEEEEEECSTTC---------------CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred             eeEEEEEcC-CCcEEEEEECCCC---------------CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence            877666533 2233344433221               223455667778888765432211   111223689999999


Q ss_pred             EEEeCCC-eEEEEeCCCeEEEEECCCC------------cEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          394 LSWSKNG-FLLSSSADKTVRLWQVGID------------RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       394 l~~sp~g-~l~sgs~Dg~V~lWd~~~~------------~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      ++|+|++ +|++++.|++|+|||++..            .+...+ .|...|++++|+| ++.+|++|+.||.|++||+.
T Consensus       262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~  340 (393)
T 1erj_A          262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKK  340 (393)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETT
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECC
Confidence            9999999 9999999999999999753            334444 4999999999999 99999999999999999999


Q ss_pred             CCeEE-EecCCCCCeEEEEEcc------CCCEEEEeecCC
Q 011126          460 RCQVV-DYTDIREIVSAVCYCP------DGKVRQNSACNF  492 (493)
Q Consensus       460 ~~~~~-~~~~~~~~I~sv~~sp------dG~~l~s~s~d~  492 (493)
                      +++.+ .+.+|...|++++|+|      ++++|++++.|+
T Consensus       341 ~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg  380 (393)
T 1erj_A          341 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC  380 (393)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             CCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCC
Confidence            98876 5788999999999986      688999999886

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.7e-29  Score=246.83  Aligned_cols=239  Identities=19%  Similarity=0.197  Sum_probs=177.7

Q ss_pred             eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl  313 (493)
                      |...+.+++|+|++.+||+|+.|++|+||+................+.+|.+.|++++|+|+|++|++|+.|++|+|||+
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~  136 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET  136 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence            66778889999999999999999999999986432211122234567899999999999999999999999999999999


Q ss_pred             CCC----eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          314 IEH----ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       314 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      ...    +.+..+..+...+.++.|.++.                ...+.++.++.+.+|+.....  .+++..+.+|..
T Consensus       137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~----------------~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~  198 (330)
T 2hes_X          137 DESGEEYECISVLQEHSQDVKHVIWHPSE----------------ALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEG  198 (330)
T ss_dssp             CTTCCCCEEEEEECCCSSCEEEEEECSSS----------------SEEEEEETTSCEEEEEEETTE--EEEEEEECCCSS
T ss_pred             cCCCCCeEEEEEeccCCCceEEEEECCCC----------------CEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCC
Confidence            432    3455566666666666665533                123456667778777643211  135678899999


Q ss_pred             CEeEEEEeCC--C-eEEEEeCCCeEEEEECCCC--------cEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEE
Q 011126          390 EVLDLSWSKN--G-FLLSSSADKTVRLWQVGID--------RCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (493)
Q Consensus       390 ~V~~l~~sp~--g-~l~sgs~Dg~V~lWd~~~~--------~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IW  456 (493)
                      .|.+++|+|+  + +|++++.|++|+|||+..+        .+...+.  |...|++++|+| ++ +|++++.||+|+||
T Consensus       199 ~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~-~l~s~~~dg~v~iw  276 (330)
T 2hes_X          199 TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-NG-LIASVGADGVLAVY  276 (330)
T ss_dssp             CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-TS-CEEEEETTSCEEEE
T ss_pred             cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-CC-EEEEEeCCCEEEEE
Confidence            9999999998  5 8999999999999998754        3445553  889999999997 54 89999999999999


Q ss_pred             eCCCCe--EE-E-ecCCCC-CeEEEEEcc--CCCEEEEeecCC
Q 011126          457 EVRRCQ--VV-D-YTDIRE-IVSAVCYCP--DGKVRQNSACNF  492 (493)
Q Consensus       457 dl~~~~--~~-~-~~~~~~-~I~sv~~sp--dG~~l~s~s~d~  492 (493)
                      |+.+++  .+ . ...|.. .|++++|+|  ++++|++++.|+
T Consensus       277 ~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg  319 (330)
T 2hes_X          277 EEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG  319 (330)
T ss_dssp             EEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred             EcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence            998874  33 2 356776 899999999  789999999886

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-28  Score=244.56  Aligned_cols=240  Identities=22%  Similarity=0.264  Sum_probs=183.1

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceee-ec-ccCCEEEEEEccCCCEEEEEECC
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LA-HEGSILTMKFSLDGQYLASGGED  305 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l-~~-H~~~I~~l~fspdg~~Lasgs~D  305 (493)
                      +..+.+|.+.+.+++|+|+  +||+|+.|++|+||++......     ....+ .+ |...|++++|+|++++|++|+.|
T Consensus         7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D   79 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT-----LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD   79 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-----EEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-----EEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence            3456778888999999988  9999999999999998754211     11233 34 99999999999999999999999


Q ss_pred             CcEEEEecCC-------CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126          306 GTVRVWKVIE-------HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (493)
Q Consensus       306 g~V~iWdl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (493)
                      ++|+||++..       .+.+..+..+...+.++.|.+++                ...+.++.++.+.+|+........
T Consensus        80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g----------------~~las~s~D~~v~iwd~~~~~~~~  143 (330)
T 2hes_X           80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG----------------YYLATCSRDKSVWIWETDESGEEY  143 (330)
T ss_dssp             SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS----------------CEEEEEETTSCEEEEECCTTCCCC
T ss_pred             CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC----------------CEEEEEeCCCEEEEEeccCCCCCe
Confidence            9999999853       23444555555555555554432                234566778888888764222222


Q ss_pred             cceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC--cEEEEec-CCCcEEEEEEccCC--CCEEEEEeCCCe
Q 011126          379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFS-HNNYVTSVAFNPVD--DNYFISGSIDGK  452 (493)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~--~~~~~~~-h~~~V~~v~fsp~d--~~~l~sgs~Dg~  452 (493)
                      +.+..+.+|...|.+++|+|++ +|++++.|++|+|||+..+  +++..+. |...|++++|+| +  +.+|++|+.|++
T Consensus       144 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          144 ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDST  222 (330)
T ss_dssp             EEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEEEETTSC
T ss_pred             EEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEEEeCCCe
Confidence            4467788999999999999999 9999999999999998776  5677775 999999999999 6  678999999999


Q ss_pred             EEEEeCCCC--------eEE-EecC-CCCCeEEEEEccCCCEEEEeecCC
Q 011126          453 VRIWEVRRC--------QVV-DYTD-IREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       453 V~IWdl~~~--------~~~-~~~~-~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      |+|||+.++        ... .+.. |...|++++|+|++ +|++++.|+
T Consensus       223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg  271 (330)
T 2hes_X          223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG  271 (330)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS
T ss_pred             EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC
Confidence            999999754        223 2333 88999999999776 777887765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=2.6e-29  Score=254.25  Aligned_cols=237  Identities=24%  Similarity=0.372  Sum_probs=187.4

Q ss_pred             CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (493)
Q Consensus       229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V  308 (493)
                      ..+.+|.+.+.+++|+|++++|++|+.|++|+|||.....       ....+.+|...|.+++|+|+|++|++|+.|+.|
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-------~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v  132 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-------KTHAIKLHCPWVMECAFAPNGQSVACGGLDSAC  132 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-------EEEEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------cceEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence            4567888999999999999999999999999999987543       234578899999999999999999999999999


Q ss_pred             EEEecCCCee-------eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126          309 RVWKVIEHER-------LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (493)
Q Consensus       309 ~iWdl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (493)
                      +||++.+...       ...+..+...+..+.+.+..               ....+.++.++.+.+|+.....    .+
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~---------------~~~l~s~s~D~~i~~wd~~~~~----~~  193 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ---------------ETRLITGSGDQTCVLWDVTTGQ----RI  193 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS---------------SSCEEEECTTSCEEEECTTTCC----EE
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecCC---------------CCEEEEECCCCcEEEEEcCCCc----EE
Confidence            9999965421       12222333323332222211               1234677889999999886533    23


Q ss_pred             EEE-----ecCCCCEeEEEEeC-CC-eEEEEeCCCeEEEEECC-CCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCe
Q 011126          382 HEF-----QGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVG-IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK  452 (493)
Q Consensus       382 ~~~-----~~h~~~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~-~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~  452 (493)
                      ..+     .+|...|.+++|++ ++ +|++|+.|++|++||++ ...++..+. |...|++++|+| ++++|++|+.||+
T Consensus       194 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~  272 (380)
T 3iz6_a          194 SIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGT  272 (380)
T ss_dssp             EEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSC
T ss_pred             EEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCe
Confidence            333     57999999999987 55 99999999999999998 456677765 999999999999 9999999999999


Q ss_pred             EEEEeCCCCeEEE-ecCC-------CCCeEEEEEccCCCEEEEeecCC
Q 011126          453 VRIWEVRRCQVVD-YTDI-------REIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       453 V~IWdl~~~~~~~-~~~~-------~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      |+|||+++++.+. +..+       ...|++++|+|+|++|++|+.|+
T Consensus       273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg  320 (380)
T 3iz6_a          273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG  320 (380)
T ss_dssp             EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS
T ss_pred             EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC
Confidence            9999999998764 3222       23489999999999999998775

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.1e-28  Score=240.18  Aligned_cols=254  Identities=11%  Similarity=0.120  Sum_probs=205.3

Q ss_pred             ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (493)
Q Consensus       227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (493)
                      +...+.+|...+.+++|+|++++|++|+.||.|+||++....       ....+.+|...|++++|+|++++|++++.||
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg   96 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-------RLGTLDGHTGTIWSIDVDCFTKYCVTGSADY   96 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTT
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCC
Confidence            334577888999999999999999999999999999987543       2346788999999999999999999999999


Q ss_pred             cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCc-------------eeeeeccCccc---------------------
Q 011126          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ-------------LIPIDVDKEKI---------------------  352 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~---------------------  352 (493)
                      .|++||+.+++.+..+. +...+.++.+.+.....             +..++......                     
T Consensus        97 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B           97 SIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             EEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             eEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            99999999999888877 44555556555543211             11111111100                     


Q ss_pred             ----------cceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE
Q 011126          353 ----------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC  421 (493)
Q Consensus       353 ----------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~  421 (493)
                                .....+.++.++.+.+|+....   .+++..+..|...|.+++|+|++ +|++++.|+.|++||+.++++
T Consensus       176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  252 (369)
T 3zwl_B          176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNN---YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV  252 (369)
T ss_dssp             CCEEEEEECGGGCEEEEEETTSEEEEEETTTT---TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cceeEEEEcCCCCEEEEEcCCCEEEEEECCCC---cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence                      0112334455666666665431   24567788899999999999999 999999999999999999999


Q ss_pred             EEEecCCCcEEEEEEccCCCCEEEEEeCCC--------------eEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEE
Q 011126          422 LRVFSHNNYVTSVAFNPVDDNYFISGSIDG--------------KVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQ  486 (493)
Q Consensus       422 ~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg--------------~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~  486 (493)
                      +..+.+...+.+++|+| ++.++++++.++              .|++||+.+++.+ .+..|...|++++|+|+|++|+
T Consensus       253 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  331 (369)
T 3zwl_B          253 LKKYETDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA  331 (369)
T ss_dssp             EEEEECSSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             eeeecCCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEE
Confidence            99999999999999999 999999999998              8999999998877 4788999999999999999999


Q ss_pred             EeecCC
Q 011126          487 NSACNF  492 (493)
Q Consensus       487 s~s~d~  492 (493)
                      +++.|+
T Consensus       332 s~~~dg  337 (369)
T 3zwl_B          332 SGGEDG  337 (369)
T ss_dssp             EEETTS
T ss_pred             EEcCCC
Confidence            999875

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=6.5e-29  Score=249.37  Aligned_cols=248  Identities=16%  Similarity=0.211  Sum_probs=180.4

Q ss_pred             ccccccccCceeeeecccccceeccCCCeEEeeec------CCeEEEEECCCccccccccccceeeecccCCEEEEEEcc
Q 011126          221 KRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQR------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL  294 (493)
Q Consensus       221 k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~------dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp  294 (493)
                      ...|........+|...+.+++|+|||++||+|+.      |+.|++|+.........   ......+|...|++++|+|
T Consensus        28 ~~~w~~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~---~~~~~~~~~~~V~~~~~s~  104 (357)
T 4g56_B           28 GSAWGRPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES---LCTAGVQTEAGVTDVAWVS  104 (357)
T ss_dssp             ------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG---GCSEEEECSSCEEEEEEET
T ss_pred             ccccCCCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee---EecccCCCCCCEEEEEEcC
Confidence            34565555566788899999999999999999997      78899998765443221   1223567999999999999


Q ss_pred             CCCEEEEEECCCcEEEEecCCCeeeeeee----ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcC
Q 011126          295 DGQYLASGGEDGTVRVWKVIEHERLDGFD----VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP  370 (493)
Q Consensus       295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  370 (493)
                      ++. +++++.||+|+|||+.+++......    .+...+.++.+.+++                ...+.++.++.+.+|+
T Consensus       105 d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg----------------~~l~sgs~dg~v~iwd  167 (357)
T 4g56_B          105 EKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG----------------TQAVSGGKDFSVKVWD  167 (357)
T ss_dssp             TTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS----------------SEEEEEETTSCEEEEE
T ss_pred             CCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC----------------CEEEEEeCCCeEEEEE
Confidence            985 5567899999999998877543322    233444555554432                2234566778888887


Q ss_pred             CCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEE
Q 011126          371 PKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFI  445 (493)
Q Consensus       371 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~  445 (493)
                      ....    +.+..+.+|...|++++|+|++  ++++++.|++|+|||+++++++..+.   |...+++++|+|..+.+|+
T Consensus       168 ~~~~----~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          168 LSQK----AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             TTTT----EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred             CCCC----cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence            7643    4577889999999999999987  89999999999999999988776654   7788999999995578999


Q ss_pred             EEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCC-CEEEEeecCC
Q 011126          446 SGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG-KVRQNSACNF  492 (493)
Q Consensus       446 sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG-~~l~s~s~d~  492 (493)
                      +|+.|+.|+|||+++++.+ .+..|...|++++|+|+| ++|++++.|.
T Consensus       244 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~  292 (357)
T 4g56_B          244 CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDC  292 (357)
T ss_dssp             EEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             EeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCC
Confidence            9999999999999988765 578899999999999998 5788888775

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=1.4e-27  Score=234.04  Aligned_cols=236  Identities=20%  Similarity=0.337  Sum_probs=196.3

Q ss_pred             CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (493)
Q Consensus       229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V  308 (493)
                      ..+.+|...+.+++|+|++++|++|+.||.|+||+.....       ..+.+.+|...|.+++|+|++++|++|+.|+.|
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   89 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTL   89 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-------cchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence            3567788889999999999999999999999999987543       234578899999999999999999999999999


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      ++||+.+++.+..+..+...+.++.+.+..                ...+.++.++.+.+|+....    +.+..+..|.
T Consensus        90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~----------------~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~  149 (312)
T 4ery_A           90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------------NLIVSGSFDESVRIWDVKTG----KCLKTLPAHS  149 (312)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSS----------------SEEEEEETTSCEEEEETTTC----CEEEEECCCS
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCCC----------------CEEEEEeCCCcEEEEECCCC----EEEEEecCCC
Confidence            999999999888888777666666665433                12345667778888877643    4467788999


Q ss_pred             CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                      ..|.+++|+|++ +|++++.|+.|++||+++++++..+.  +...+.+++|+| ++++|++++.||.|++||+++++.+.
T Consensus       150 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~  228 (312)
T 4ery_A          150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLK  228 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            999999999999 99999999999999999999888774  677899999999 99999999999999999999998774


Q ss_pred             -ecCCCCC---eEEEEEccCCCEEEEeecCC
Q 011126          466 -YTDIREI---VSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       466 -~~~~~~~---I~sv~~spdG~~l~s~s~d~  492 (493)
                       +..|...   +......+++++|++++.|+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg  259 (312)
T 4ery_A          229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDN  259 (312)
T ss_dssp             EECSSCCSSSCCCEEEECSSSCEEEECCTTS
T ss_pred             EEEecCCceEEEEEEEEeCCCcEEEEECCCC
Confidence             5555543   33333447889999998775

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.96  E-value=4e-28  Score=257.86  Aligned_cols=231  Identities=25%  Similarity=0.363  Sum_probs=192.6

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      +..|...+.+++|+|++++|++|+.++.|++|+....        ....+.+|...|++++|+|+|++|++++.|+.|++
T Consensus       340 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~--------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~  411 (577)
T 2ymu_A          340 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL  411 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC--------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC--------EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence            4456667778999999999999999999999996421        23467889999999999999999999999999999


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      ||. +++.+..+..+...+.++.+.++..                ..+..+.++.+.+|+.     ..+.+..+.+|...
T Consensus       412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~----------------~l~~~~~d~~v~~w~~-----~~~~~~~~~~~~~~  469 (577)
T 2ymu_A          412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQ----------------TIASASDDKTVKLWNR-----NGQLLQTLTGHSSS  469 (577)
T ss_dssp             ECT-TCCEEEEEECCSSCEEEEEECTTSS----------------EEEEEETTSEEEEEET-----TSCEEEEEECCSSC
T ss_pred             EeC-CCCEEEEecCCCCCeEEEEECCCCC----------------EEEEEcCCCEEEEEEC-----CCCEEEEEcCCCCC
Confidence            995 5667777777766666666654432                2234456677777764     24557788999999


Q ss_pred             EeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecC
Q 011126          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD  468 (493)
Q Consensus       391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~  468 (493)
                      |++++|+|++ +|++++.|++|+|||. +++++..+. |...|++++|+| ++++|++++.||.|+|||+....+..+.+
T Consensus       470 v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~~~~~~~~~~~  547 (577)
T 2ymu_A          470 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTG  547 (577)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTTSCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC-CCCEEEEEECcCEEEEEeCCCCEEEEEcC
Confidence            9999999999 9999999999999995 567777775 999999999999 99999999999999999975544556889


Q ss_pred             CCCCeEEEEEccCCCEEEEeecCCC
Q 011126          469 IREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       469 ~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      |...|++++|+|||++|++++.|++
T Consensus       548 h~~~v~~~~fs~dg~~l~s~~~D~~  572 (577)
T 2ymu_A          548 HSSSVWGVAFSPDGQTIASASSDKT  572 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCE
Confidence            9999999999999999999998875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=8.8e-28  Score=235.44  Aligned_cols=232  Identities=19%  Similarity=0.338  Sum_probs=188.9

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      +..|...+.+++|+|++++|++|+.|+.|+||++....       ....+.+|...|.+++|+|++++|++|+.|+.|++
T Consensus        61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~i  133 (312)
T 4ery_A           61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI  133 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc-------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            34566677889999999999999999999999987543       23467899999999999999999999999999999


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSS  389 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~  389 (493)
                      ||+.+++.+..+..+...+.++.+.+++.                ..+.++.++.+.+|+.....    .+..+ ..|..
T Consensus       134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~  193 (312)
T 4ery_A          134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGS----------------LIVSSSYDGLCRIWDTASGQ----CLKTLIDDDNP  193 (312)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTTCC----EEEEECCSSCC
T ss_pred             EECCCCEEEEEecCCCCcEEEEEEcCCCC----------------EEEEEeCCCcEEEEECCCCc----eeeEEeccCCC
Confidence            99999998888877766666666554331                23455567778888765432    23333 35677


Q ss_pred             CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcE--EEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 011126          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYV--TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-  464 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V--~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-  464 (493)
                      .+..++|+|++ +|++++.|+.|++||+.+++++..+. |...+  ....|++.++.+|++|+.||.|++||+.+++++ 
T Consensus       194 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  273 (312)
T 4ery_A          194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ  273 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence            89999999999 99999999999999999999988886 54432  234455438899999999999999999999877 


Q ss_pred             EecCCCCCeEEEEEccCCCEEEEee
Q 011126          465 DYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       465 ~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .+.+|...|.+++|+|+++++++++
T Consensus       274 ~~~~h~~~v~~~~~~p~~~~l~s~~  298 (312)
T 4ery_A          274 KLQGHTDVVISTACHPTENIIASAA  298 (312)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEE
T ss_pred             hhhccCCcEEEEeecCcCCceEEEE
Confidence            5788999999999999999999887

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=4e-29  Score=251.13  Aligned_cols=236  Identities=11%  Similarity=0.090  Sum_probs=181.8

Q ss_pred             eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl  313 (493)
                      +...+.+++|+|++++||+|+.|+.|+||++.....     .....+.+|.+.|++++|+|++++|++++.|++|++||+
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-----KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            345788899999999999999999999999875421     223357789999999999999999999999999999999


Q ss_pred             CCCe---eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-CCC
Q 011126          314 IEHE---RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSS  389 (493)
Q Consensus       314 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~  389 (493)
                      .+++   ....+..+...+.++.+.++..                ..+.++.++.+.+|+...... ......+.+ |..
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~h~~  147 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNED----------------KFAVGSGARVISVCYFEQEND-WWVSKHLKRPLRS  147 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSS----------------CCEEEESSSCEEECCC------CCCCEEECSSCCS
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCC----------------EEEEEecCCeEEEEEECCccc-ceeeeEeecccCC
Confidence            8876   4444445555555555544321                223455677788887754321 113556677 999


Q ss_pred             CEeEEEEeCCC-eEEEEeCCCeEEEEECC------------------CCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC
Q 011126          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVG------------------IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID  450 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~------------------~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D  450 (493)
                      .|++++|+|++ +|++++.|++|++||+.                  .++++..+.|...|++++|+| ++++|++++.|
T Consensus       148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d  226 (377)
T 3dwl_C          148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSP-SGNALAYAGHD  226 (377)
T ss_dssp             CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECT-TSSCEEEEETT
T ss_pred             CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECC-CCCEEEEEeCC
Confidence            99999999999 99999999999999985                  355666668999999999999 99999999999


Q ss_pred             CeEEEEeCCCCeE----E-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          451 GKVRIWEVRRCQV----V-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       451 g~V~IWdl~~~~~----~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      |+|+|||+.+++.    + .+..|...|++++|+|+|++|++++.+.
T Consensus       227 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  273 (377)
T 3dwl_C          227 SSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS  273 (377)
T ss_dssp             TEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred             CcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence            9999999998864    3 5788999999999999999998887553

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.7e-28  Score=241.55  Aligned_cols=243  Identities=19%  Similarity=0.262  Sum_probs=193.5

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC--CCEEEEEECC
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGED  305 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~D  305 (493)
                      ...+.+|...+.+++|+|++++||+|+.||.|+||++.....     .....+.+|...|++++|+|+  +++|++|+.|
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-----eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            345678889999999999999999999999999999864322     233467889999999999987  9999999999


Q ss_pred             CcEEEEecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126          306 GTVRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (493)
Q Consensus       306 g~V~iWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (493)
                      |.|++||+.+++  .+..+..+...+.++.+.+....              ...+.++.++.+.+|+......  .....
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~l~~~~~d~~i~v~d~~~~~~--~~~~~  142 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG--------------PLLLVASSDGKVSVVEFKENGT--TSPII  142 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTSEEEEEECCTTSC--CCEEE
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC--------------CEEEEecCCCcEEEEecCCCCc--eeeEE
Confidence            999999999887  55556556666666666554211              1234456677788887654321  23456


Q ss_pred             EecCCCCEeEEEEeC-------------CC-eEEEEeCCCeEEEEECCCCc----EEEEec-CCCcEEEEEEccCC---C
Q 011126          384 FQGHSSEVLDLSWSK-------------NG-FLLSSSADKTVRLWQVGIDR----CLRVFS-HNNYVTSVAFNPVD---D  441 (493)
Q Consensus       384 ~~~h~~~V~~l~~sp-------------~g-~l~sgs~Dg~V~lWd~~~~~----~~~~~~-h~~~V~~v~fsp~d---~  441 (493)
                      +.+|...|.+++|+|             ++ +|++++.|+.|++||++++.    ++..+. |...|++++|+| +   +
T Consensus       143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~  221 (379)
T 3jrp_A          143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLR  221 (379)
T ss_dssp             EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSS
T ss_pred             ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC-CCCCC
Confidence            778999999999999             56 99999999999999998764    333443 899999999999 7   8


Q ss_pred             CEEEEEeCCCeEEEEeCCCCe----EE--EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          442 NYFISGSIDGKVRIWEVRRCQ----VV--DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       442 ~~l~sgs~Dg~V~IWdl~~~~----~~--~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ++|++++.||.|+|||++++.    ..  ....+...|++++|+|+|++|++++.|+
T Consensus       222 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  278 (379)
T 3jrp_A          222 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN  278 (379)
T ss_dssp             EEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred             CeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence            999999999999999999863    22  2445888999999999999999998775

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=3.9e-27  Score=231.60  Aligned_cols=234  Identities=17%  Similarity=0.206  Sum_probs=194.2

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeee--cccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL--AHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~--~H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      .|...+.+++|+|++++|++++ ||.|++|++.......    ....+.  +|...|.+++|+|++++|++++.||.|++
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS----PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS----CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee----eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            4667888899999999999998 9999999998654221    122233  79999999999999999999999999999


Q ss_pred             EecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          311 WKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       311 Wdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      ||+.+++  ....+..+...+.++.+.++.                ...+.++.++.+.+|+....    +++..+.+|.
T Consensus       124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------~~l~~~~~dg~v~~~d~~~~----~~~~~~~~~~  183 (337)
T 1gxr_A          124 WDLAAPTPRIKAELTSSAPACYALAISPDS----------------KVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHT  183 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTS----------------SEEEEEETTSCEEEEETTTT----EEEEEECCCS
T ss_pred             EECCCCCcceeeecccCCCceEEEEECCCC----------------CEEEEEeCCCcEEEEeCCCC----ceeeeeeccc
Confidence            9998877  444455554445555554432                12234455667778876543    4467788899


Q ss_pred             CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 011126          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT  467 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~  467 (493)
                      ..|.+++|+|++ +|++++.|+.|++||+++++.+..+.+...+.+++|+| ++++|++++.||.|++||+.+++.....
T Consensus       184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~~~~~~  262 (337)
T 1gxr_A          184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLH  262 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEEEC
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCCeEEEc
Confidence            999999999999 99999999999999999999999999999999999999 9999999999999999999999988889


Q ss_pred             CCCCCeEEEEEccCCCEEEEeecCC
Q 011126          468 DIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       468 ~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      .|...|++++|+|+|++|++++.|+
T Consensus       263 ~~~~~v~~~~~~~~~~~l~~~~~dg  287 (337)
T 1gxr_A          263 LHESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCccceeEEEECCCCCEEEEecCCC
Confidence            9999999999999999999998764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.96  E-value=8.6e-28  Score=262.14  Aligned_cols=245  Identities=20%  Similarity=0.302  Sum_probs=202.2

Q ss_pred             cccCceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126          226 KKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (493)
Q Consensus       226 ~~~~~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (493)
                      ...+.+.+|.+.|.+++|+|++ ++|++|+.|++|+||++........  .....+.+|...|++++|+|++++|++|+.
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~  450 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--VAQRRLTGHSHFVEDVVLSSDGQFALSGSW  450 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--EEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--cccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence            3445678899999999999875 7899999999999999876443211  123467899999999999999999999999


Q ss_pred             CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                      ||+|+|||+.++.....+..|...+.++.+.+++.                ..+.++.++.+.+|+....... ......
T Consensus       451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~----------------~l~s~s~D~~i~iwd~~~~~~~-~~~~~~  513 (694)
T 3dm0_A          451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR----------------QIVSASRDRTIKLWNTLGECKY-TISEGG  513 (694)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS----------------CEEEEETTSCEEEECTTSCEEE-EECSST
T ss_pred             CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCC----------------EEEEEeCCCEEEEEECCCCcce-eeccCC
Confidence            99999999999999888888887777777765442                2345667888888876421110 001112


Q ss_pred             ecCCCCEeEEEEeCCC---eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          385 QGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g---~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      .+|...|.+++|+|++   .|++++.|++|+|||++++++...+. |...|++++|+| ++++|++|+.||+|+|||+.+
T Consensus       514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTT
T ss_pred             CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC
Confidence            4689999999999986   79999999999999999999988886 999999999999 999999999999999999999


Q ss_pred             CeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          461 CQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       461 ~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ++.+....+...|++++|+|++.+|++++.
T Consensus       593 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  622 (694)
T 3dm0_A          593 GKKLYSLEANSVIHALCFSPNRYWLCAATE  622 (694)
T ss_dssp             TEEEECCBCSSCEEEEEECSSSSEEEEEET
T ss_pred             CceEEEecCCCcEEEEEEcCCCcEEEEEcC
Confidence            998876667788999999999999887754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.96  E-value=9.2e-27  Score=236.59  Aligned_cols=236  Identities=20%  Similarity=0.288  Sum_probs=185.4

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccc------------eeeecccCCEEEEEEccCCCEEE
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTG------------QEFLAHEGSILTMKFSLDGQYLA  300 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~------------~~l~~H~~~I~~l~fspdg~~La  300 (493)
                      .|...+.+++|+|+|++||+|+ ++.++||++........ +...            .....+...|++++|+|+|++|+
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR-LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE-ECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEE-ecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            4778888999999999999986 68999999876543211 0000            00012334599999999999999


Q ss_pred             EEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (493)
Q Consensus       301 sgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (493)
                      +|+.|++|+|||+.+++.+..+..+...+.++.|.+++.                ..+.++.++.+.+|+......    
T Consensus       140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~----------------~l~s~s~d~~v~iwd~~~~~~----  199 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD----------------KLVSGSGDRTVRIWDLRTGQC----  199 (393)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSEEEEEETTTTEE----
T ss_pred             EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC----------------EEEEecCCCcEEEEECCCCee----
Confidence            999999999999999998888887777777776655432                234566788888887764322    


Q ss_pred             eEEEecCCCCEeEEEEeC-CC-eEEEEeCCCeEEEEECCCCcEEEEe--------cCCCcEEEEEEccCCCCEEEEEeCC
Q 011126          381 LHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVF--------SHNNYVTSVAFNPVDDNYFISGSID  450 (493)
Q Consensus       381 ~~~~~~h~~~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~~~~~~~--------~h~~~V~~v~fsp~d~~~l~sgs~D  450 (493)
                      ...+ .+...+.+++|+| ++ +|++|+.|++|++||++++.++..+        .|...|++++|+| ++++|++|+.|
T Consensus       200 ~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d  277 (393)
T 1erj_A          200 SLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLD  277 (393)
T ss_dssp             EEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             EEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCC
Confidence            3333 3567899999999 67 9999999999999999999888776        3889999999999 99999999999


Q ss_pred             CeEEEEeCCCCe-------------EEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          451 GKVRIWEVRRCQ-------------VVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       451 g~V~IWdl~~~~-------------~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      |+|++||+++..             ...+.+|...|++++|+|++++|++++.|+
T Consensus       278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~  332 (393)
T 1erj_A          278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR  332 (393)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred             CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC
Confidence            999999997632             235678999999999999999999999875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.96  E-value=2.7e-27  Score=258.26  Aligned_cols=277  Identities=16%  Similarity=0.229  Sum_probs=210.1

Q ss_pred             hhhhhccccccCC----CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccce
Q 011126          167 EIEIESRLQESGS----SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSAT  242 (493)
Q Consensus       167 ~~~~~~~lr~v~~----~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~  242 (493)
                      +|...  |..+.+    ++.|.....++++.     +|.+.....               .+......+.+|...+.+++
T Consensus       380 ~H~~~--V~~v~~~~~~~~~l~s~s~D~~i~-----~W~~~~~~~---------------~~~~~~~~~~~h~~~v~~v~  437 (694)
T 3dm0_A          380 AHTDM--VTAIATPIDNADIIVSASRDKSII-----LWKLTKDDK---------------AYGVAQRRLTGHSHFVEDVV  437 (694)
T ss_dssp             CCSSC--EEEEECCTTCCSEEEEEETTSEEE-----EEECCCSTT---------------CSCEEEEEEECCSSCEEEEE
T ss_pred             cCCce--eEEEEecCCCCCEEEEEeCCCcEE-----EEEccCCCc---------------ccccccceecCCCCcEEEEE
Confidence            44444  555544    35677777787777     887653211               01111234667888889999


Q ss_pred             eccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeee
Q 011126          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF  322 (493)
Q Consensus       243 fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~  322 (493)
                      |+|++++|++|+.|++|+|||+....       ....+.+|...|++++|+|++++|++|+.|++|+|||+.........
T Consensus       438 ~s~~g~~l~sgs~Dg~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~  510 (694)
T 3dm0_A          438 LSSDGQFALSGSWDGELRLWDLAAGV-------STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS  510 (694)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCc-------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence            99999999999999999999987543       23467899999999999999999999999999999998655433222


Q ss_pred             e---ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126          323 D---VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (493)
Q Consensus       323 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (493)
                      .   .+...+.++.+.++...              ...+.++.++.+.+|+....    +....+.+|...|++++|+|+
T Consensus       511 ~~~~~h~~~v~~~~~~~~~~~--------------~~l~s~s~d~~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spd  572 (694)
T 3dm0_A          511 EGGEGHRDWVSCVRFSPNTLQ--------------PTIVSASWDKTVKVWNLSNC----KLRSTLAGHTGYVSTVAVSPD  572 (694)
T ss_dssp             SSTTSCSSCEEEEEECSCSSS--------------CEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTT
T ss_pred             cCCCCCCCcEEEEEEeCCCCc--------------ceEEEEeCCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEeCC
Confidence            1   22333445555443321              22356677888888887643    346778899999999999999


Q ss_pred             C-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCC--------
Q 011126          400 G-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDI--------  469 (493)
Q Consensus       400 g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~--------  469 (493)
                      + +|++++.|++|+|||+.+++++..+.+...|.+++|+| ++.+|++++ |+.|+|||+.+++++. +..+        
T Consensus       573 g~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~  650 (694)
T 3dm0_A          573 GSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP-NRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKA  650 (694)
T ss_dssp             SSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC------
T ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcC-CCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccc
Confidence            9 99999999999999999999999988888999999999 888877765 5669999999988764 2111        


Q ss_pred             -----------CCCeEEEEEccCCCEEEEeecCC
Q 011126          470 -----------REIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       470 -----------~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                                 ...+++++|+|||++|++|+.|+
T Consensus       651 ~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg  684 (694)
T 3dm0_A          651 DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG  684 (694)
T ss_dssp             ----------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence                       11378999999999999999886

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=9.6e-27  Score=228.75  Aligned_cols=245  Identities=16%  Similarity=0.186  Sum_probs=190.3

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--CCCEEEEEECCCcE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV  308 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V  308 (493)
                      +.+|.+.+.+++|+|++++||+|+.||.|+||++.......   .....+.+|...|++++|+|  ++++|++|+.||.|
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW---ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE---EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc---eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            45788889999999999999999999999999998654321   23346789999999999999  69999999999999


Q ss_pred             EEEecCCC---------eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeeccc
Q 011126          309 RVWKVIEH---------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (493)
Q Consensus       309 ~iWdl~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (493)
                      ++||+.++         +.+..+..+...+.++.+.+....              ...+.++.++.+.+|+.........
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~l~~~~~dg~v~iwd~~~~~~~~~  149 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG--------------LKLACLGNDGILRLYDALEPSDLRS  149 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTCEEEEEECSSTTCTTC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC--------------cEEEEecCCCcEEEecCCChHHhcc
Confidence            99999887         445555555555566665554211              1234455677788887654332111


Q ss_pred             c---------eEEEecCCCCEeEEEEeCC---C-eEEEEeCCCeEEEEECCCCcE--EEEec-CCCcEEEEEEccCCC--
Q 011126          380 P---------LHEFQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQVGIDRC--LRVFS-HNNYVTSVAFNPVDD--  441 (493)
Q Consensus       380 ~---------~~~~~~h~~~V~~l~~sp~---g-~l~sgs~Dg~V~lWd~~~~~~--~~~~~-h~~~V~~v~fsp~d~--  441 (493)
                      .         .....+|...+.+++|+|+   + +|++++.|+.+.+|+...+..  +..+. |...|++++|+| ++  
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~  228 (351)
T 3f3f_A          150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIGR  228 (351)
T ss_dssp             CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSSC
T ss_pred             ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCCC
Confidence            0         0111368889999999997   5 999999999998888887765  44444 899999999999 77  


Q ss_pred             --CEEEEEeCCCeEEEEeCCCC----------------------------------------------eEE-EecCCCCC
Q 011126          442 --NYFISGSIDGKVRIWEVRRC----------------------------------------------QVV-DYTDIREI  472 (493)
Q Consensus       442 --~~l~sgs~Dg~V~IWdl~~~----------------------------------------------~~~-~~~~~~~~  472 (493)
                        ++|++|+.||.|++||++.+                                              +.+ .+..|...
T Consensus       229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  308 (351)
T 3f3f_A          229 WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE  308 (351)
T ss_dssp             SSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSC
T ss_pred             cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc
Confidence              89999999999999999864                                              333 46789999


Q ss_pred             eEEEEEccCCCEEEEeecCCC
Q 011126          473 VSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       473 I~sv~~spdG~~l~s~s~d~~  493 (493)
                      |++++|+|+|++|++++.|++
T Consensus       309 v~~~~~s~~~~~l~s~~~dg~  329 (351)
T 3f3f_A          309 VWSVSWNLTGTILSSAGDDGK  329 (351)
T ss_dssp             EEEEEECSSSCCEEEEETTSC
T ss_pred             EEEEEEcCCCCEEEEecCCCc
Confidence            999999999999999998863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.6e-28  Score=246.87  Aligned_cols=304  Identities=14%  Similarity=0.231  Sum_probs=220.7

Q ss_pred             CcceeeeecCCCceeE-EccCCCchhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhh
Q 011126          144 HAACRIDDWGKGADLV-VSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRK  219 (493)
Q Consensus       144 ~~~~~~~~ld~g~~~v-~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~  219 (493)
                      +...+|+|++++.... +...   +|...  +..+.+   ++.|+....++.+.     +|.+......           
T Consensus        44 d~~v~iw~~~~~~~~~~~~~~---~~~~~--v~~~~~s~~~~~l~~~~~dg~v~-----vw~~~~~~~~-----------  102 (416)
T 2pm9_A           44 DSSLELWSLLAADSEKPIASL---QVDSK--FNDLDWSHNNKIIAGALDNGSLE-----LYSTNEANNA-----------  102 (416)
T ss_dssp             CCCCEEEESSSGGGCSCSCCC---CCSSC--EEEEEECSSSSCEEEEESSSCEE-----EECCSSTTSC-----------
T ss_pred             CCeEEEEEccCCCCCcEEEEE---ecCCc--eEEEEECCCCCeEEEEccCCeEE-----Eeeccccccc-----------
Confidence            3456889988886431 1111   12222  445544   67777777776666     7765442100           


Q ss_pred             hccccccccCceeeeecccccceeccC-CCeEEeeecCCeEEEEECCCcccccc--ccccceeeecccCCEEEEEEccC-
Q 011126          220 VKRGWLKKLGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELS--SLYTGQEFLAHEGSILTMKFSLD-  295 (493)
Q Consensus       220 ~k~~w~~~~~~~~~~~~~~~~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~--~~~~~~~l~~H~~~I~~l~fspd-  295 (493)
                           ......+..|...+.+++|+|+ +.+|++++.|+.|++|++........  .......+.+|...|.+++|+|+ 
T Consensus       103 -----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  177 (416)
T 2pm9_A          103 -----INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL  177 (416)
T ss_dssp             -----CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC
T ss_pred             -----ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC
Confidence                 0022234557778888999998 89999999999999999987652111  01111234679999999999998 


Q ss_pred             CCEEEEEECCCcEEEEecCCCeeeeeeecc------CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc---eE
Q 011126          296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQ------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL---TC  366 (493)
Q Consensus       296 g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~  366 (493)
                      +.+|++++.||.|++||+.+++.+..+..+      ...+.++.+.+.....++.               ++.++   .+
T Consensus       178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~---------------~~~d~~~~~i  242 (416)
T 2pm9_A          178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT---------------ATGSDNDPSI  242 (416)
T ss_dssp             TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE---------------EECCSSSCCC
T ss_pred             CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE---------------EECCCCCceE
Confidence            789999999999999999999988888766      4555666666554332222               22232   55


Q ss_pred             EEcCCCceeecccceEEEe-cCCCCEeEEEEeC-CC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCC-
Q 011126          367 VVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD-  441 (493)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~-  441 (493)
                      .+|+....   ..++..+. +|...|.+++|+| ++ +|++++.|++|++||+.+++++..+. |...|++++|+| ++ 
T Consensus       243 ~~~d~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~  318 (416)
T 2pm9_A          243 LIWDLRNA---NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-EAP  318 (416)
T ss_dssp             CEEETTST---TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-TCT
T ss_pred             EEEeCCCC---CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-CCC
Confidence            55554432   13456667 8999999999999 77 99999999999999999999998886 899999999999 77 


Q ss_pred             CEEEEEeCCCeEEEEeCCCCeEEE-e-----------------------------------cCCCCCeEEEEEccCCCEE
Q 011126          442 NYFISGSIDGKVRIWEVRRCQVVD-Y-----------------------------------TDIREIVSAVCYCPDGKVR  485 (493)
Q Consensus       442 ~~l~sgs~Dg~V~IWdl~~~~~~~-~-----------------------------------~~~~~~I~sv~~spdG~~l  485 (493)
                      .+|++++.||.|+|||+.+.+... .                                   ..+..++++++|+|||++|
T Consensus       319 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  398 (416)
T 2pm9_A          319 DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLV  398 (416)
T ss_dssp             TEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEE
T ss_pred             CEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEE
Confidence            899999999999999998764221 0                                   0156778899999999999


Q ss_pred             EEeecCC
Q 011126          486 QNSACNF  492 (493)
Q Consensus       486 ~s~s~d~  492 (493)
                      ++++.|+
T Consensus       399 a~~~~d~  405 (416)
T 2pm9_A          399 QITPDGK  405 (416)
T ss_dssp             CBCTTSS
T ss_pred             EEeCCCC
Confidence            9998775

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=2.5e-26  Score=225.74  Aligned_cols=232  Identities=16%  Similarity=0.213  Sum_probs=194.6

Q ss_pred             eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl  313 (493)
                      +...+.+++|+|++++|++++.++.|++|++......     ....+..|...|.+++|+|++++|++++.||.|++||+
T Consensus        96 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~  170 (337)
T 1gxr_A           96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-----IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-----EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-----eeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence            4566777999999999999999999999999865421     22356789999999999999999999999999999999


Q ss_pred             CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeE
Q 011126          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (493)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  393 (493)
                      .+++.+..+..+...+.++.+.++..                ..+.++.++.+.+|+......    +.. ..|...+.+
T Consensus       171 ~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~l~~~~~dg~i~~~d~~~~~~----~~~-~~~~~~v~~  229 (337)
T 1gxr_A          171 HNQTLVRQFQGHTDGASCIDISNDGT----------------KLWTGGLDNTVRSWDLREGRQ----LQQ-HDFTSQIFS  229 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSEEEEEETTTTEE----EEE-EECSSCEEE
T ss_pred             CCCceeeeeecccCceEEEEECCCCC----------------EEEEEecCCcEEEEECCCCce----Eee-ecCCCceEE
Confidence            99998888877766666666655331                223445567788887654332    233 347889999


Q ss_pred             EEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCC
Q 011126          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI  472 (493)
Q Consensus       394 l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~  472 (493)
                      ++|+|++ +|++++.|+.|++||+.+++......|...|++++|+| ++++|++++.||.|++||+.+++.+....+...
T Consensus       230 ~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~  308 (337)
T 1gxr_A          230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS  308 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEecCCCc
Confidence            9999999 99999999999999999998877777999999999999 999999999999999999999998877778999


Q ss_pred             eEEEEEccCCCEEEEeecCC
Q 011126          473 VSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       473 I~sv~~spdG~~l~s~s~d~  492 (493)
                      |++++|+|+|++|++++.|+
T Consensus       309 v~~~~~s~~~~~l~~~~~dg  328 (337)
T 1gxr_A          309 VLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             EEEEEECTTSCEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEecCCC
Confidence            99999999999999998875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.95  E-value=5e-26  Score=233.03  Aligned_cols=247  Identities=19%  Similarity=0.298  Sum_probs=188.7

Q ss_pred             ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~  318 (493)
                      +.++|+++ ++||+|. |++|+|||..+.....     ...+.+|...|++|+|+|+|++||+|+.||+|+|||+.+++.
T Consensus       109 ~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-----~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          109 NLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-----LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             BCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-----EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             eeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-----EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE
Confidence            44889975 5777774 9999999988654211     113457888999999999999999999999999999999999


Q ss_pred             eeeeeccCCCCceEEEeeC------CCCceeeeeccCccc-------------------cceeeeecCCCceEEEcCCCc
Q 011126          319 LDGFDVQDTDPSCLYFTIN------HLSQLIPIDVDKEKI-------------------DKTKSLRKSSDLTCVVLPPKV  373 (493)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-------------------~~~~~~~~s~~~~~~~~~~~~  373 (493)
                      +..+..+...+.++.+...      ....+...+......                   .......+..++.+.+|+...
T Consensus       182 ~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            9888877766555443211      111111111111000                   011234455667777777665


Q ss_pred             eeecccceEEEecCCCCEeEEEEeCCC--eEEE--EeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe-
Q 011126          374 FRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLS--SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-  448 (493)
Q Consensus       374 ~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~s--gs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-  448 (493)
                      ......++.....|...|.+++|+|.+  ++++  |+.|++|+|||+.++.++..+.+...+.++.|+| +++.+++++ 
T Consensus       262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~-~~~~lv~~sg  340 (420)
T 4gga_A          262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHG  340 (420)
T ss_dssp             CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEET-TTTEEEEEEC
T ss_pred             ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecC-CCCeEEEEEe
Confidence            554455677888999999999999987  5555  4589999999999999999999888999999999 888888765 


Q ss_pred             -CCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          449 -IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       449 -~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                       .|+.|+|||+.+++.+ .+.+|...|++++|+|||++|++++.|++
T Consensus       341 ~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~t  387 (420)
T 4gga_A          341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET  387 (420)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence             7899999999999877 57899999999999999999999998863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.95  E-value=2.2e-26  Score=244.47  Aligned_cols=230  Identities=24%  Similarity=0.372  Sum_probs=191.7

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      +.+|...+.+++|+|++.+|++++.|+.|++|+.....        ...+.+|...|++++|+|+|++|++|+.|+.|++
T Consensus       299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~--------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~  370 (577)
T 2ymu_A          299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH--------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL  370 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE--------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--------eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            45667777889999999999999999999999976432        2356789999999999999999999999999999


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      |+. +++.+..+..+...+.++.+.++..                ..+.++.++.+.+|+..     .+.+..+.+|...
T Consensus       371 ~~~-~~~~~~~~~~~~~~v~~~~~s~dg~----------------~l~~~~~d~~v~~~~~~-----~~~~~~~~~~~~~  428 (577)
T 2ymu_A          371 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQ----------------TIASASDDKTVKLWNRN-----GQLLQTLTGHSSS  428 (577)
T ss_dssp             EET-TCCEEEEEECCSSCEEEEEECTTSS----------------CEEEEETTSEEEEECTT-----CCEEEEEECCSSC
T ss_pred             EcC-CCCEEEEecCCCCCeEEEEECCCCC----------------EEEEEeCCCEEEEEeCC-----CCEEEEecCCCCC
Confidence            995 5677777777776666766655432                12344566777777643     3557788999999


Q ss_pred             EeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecC
Q 011126          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD  468 (493)
Q Consensus       391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~  468 (493)
                      |++++|+|++ +|++++.|++|++||+. ++.+..+ .|...|++++|+| ++++|++++.|++|+|||.....+..+..
T Consensus       429 v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~~~~~~~~~~~  506 (577)
T 2ymu_A          429 VWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTG  506 (577)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSCEEEEEEC
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcCCCCEEEEEeC
Confidence            9999999999 99999999999999975 4555555 4999999999999 99999999999999999975555557889


Q ss_pred             CCCCeEEEEEccCCCEEEEeecCC
Q 011126          469 IREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       469 ~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      |...|++++|+|||++|++++.|+
T Consensus       507 h~~~v~~l~~s~dg~~l~s~~~dg  530 (577)
T 2ymu_A          507 HSSSVRGVAFSPDGQTIASASDDK  530 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTS
T ss_pred             CCCCEEEEEEcCCCCEEEEEECcC
Confidence            999999999999999999998875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=1.7e-26  Score=230.62  Aligned_cols=236  Identities=14%  Similarity=0.164  Sum_probs=184.3

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd  312 (493)
                      .|...+.+++|+|++++|++|+.++.|+||++.....     .....+.+|...|++++|+|++++|++++.||.|++||
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence            3567788899999999999999999999999875431     13346789999999999999999999999999999999


Q ss_pred             cCCCeeeeeee--ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          313 VIEHERLDGFD--VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       313 l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      +.+++....+.  .+...+.++.+.++.  .              ..+.++.++.+.+|+...............+|...
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~--------------~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~  144 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAPNE--K--------------KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST  144 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTS--S--------------EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECCCC--C--------------EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCC
Confidence            98887555443  333444455554332  1              12233445556665543221100112233578999


Q ss_pred             EeEEEEeCCC-eEEEEeCCCeEEEEEC------------------CCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCC
Q 011126          391 VLDLSWSKNG-FLLSSSADKTVRLWQV------------------GIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID  450 (493)
Q Consensus       391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~------------------~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D  450 (493)
                      |.+++|+|++ +|++++.|+.|++||+                  ..++++..+. |...|++++|+| ++++|++++.|
T Consensus       145 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  223 (372)
T 1k8k_C          145 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHD  223 (372)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETT
T ss_pred             eeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCC
Confidence            9999999999 9999999999999995                  4677888884 899999999999 99999999999


Q ss_pred             CeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          451 GKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       451 g~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      |.|++||+++++.+ .+..|...|++++|+|+|++++++ .|
T Consensus       224 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  264 (372)
T 1k8k_C          224 STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HD  264 (372)
T ss_dssp             TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TT
T ss_pred             CEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eC
Confidence            99999999988776 577888899999999999988887 44

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=1.3e-27  Score=246.11  Aligned_cols=234  Identities=15%  Similarity=0.187  Sum_probs=176.7

Q ss_pred             ceeeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCc
Q 011126          230 AMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGT  307 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~  307 (493)
                      ....|...|.+++|+| ++.+||+|+.||.|+|||+......     ....+.+|.+.|++|+|+| ++++|++|+.||+
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~  188 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT  188 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----EEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence            3456677899999999 4679999999999999998755422     1123568999999999998 7899999999999


Q ss_pred             EEEEecCCCeeeeeeeccCC--CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          308 VRVWKVIEHERLDGFDVQDT--DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      |+|||+.+.........+..  ...++.+.++.                ...+.++.++.+.+|+..     .+.+..+.
T Consensus       189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~l~~g~~dg~i~~wd~~-----~~~~~~~~  247 (435)
T 4e54_B          189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASS----------------RMVVTGDNVGNVILLNMD-----GKELWNLR  247 (435)
T ss_dssp             EEEEETTSCEEEEEECCSSCSCCCCCEEEETTT----------------TEEEEECSSSBEEEEESS-----SCBCCCSB
T ss_pred             EEEeeccCCceeEEeccCCCCccEEEEEECCCC----------------CEEEEEeCCCcEeeeccC-----cceeEEEe
Confidence            99999977654333322222  22333333322                223456677888888764     34566788


Q ss_pred             cCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEe----cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~----~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      +|...|++++|+|++  +|++++.|++|+|||+++.+....+    .|...|++++|+| ++.+|++|+.||+|+|||+.
T Consensus       248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESS
T ss_pred             cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECC
Confidence            999999999999987  7889999999999999876654433    4899999999999 99999999999999999999


Q ss_pred             CCeEE-EecCCCC------CeEEEEEccCCCEEEEeec
Q 011126          460 RCQVV-DYTDIRE------IVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       460 ~~~~~-~~~~~~~------~I~sv~~spdG~~l~s~s~  490 (493)
                      +++.. ....|..      .+..+.|+|++.+++++..
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (435)
T 4e54_B          327 QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRY  364 (435)
T ss_dssp             SSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECC
T ss_pred             CCccceEEecccccccccceeEEEEEcCCCCEEEEEEc
Confidence            87644 3333321      2445678888888777654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.2e-26  Score=230.65  Aligned_cols=230  Identities=19%  Similarity=0.280  Sum_probs=190.6

Q ss_pred             eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (493)
Q Consensus       232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW  311 (493)
                      ..|...+.+++|+|++.+|++|+.||.|+||+....        ....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus       105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  176 (425)
T 1r5m_A          105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA--------LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW  176 (425)
T ss_dssp             ---CBCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--------eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence            345668888999999999999999999999993321        233577899999999999999999999999999999


Q ss_pred             ecCCCeeeeeeeccCCC---------------CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126          312 KVIEHERLDGFDVQDTD---------------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  376 (493)
                      |+.+++.+..+..+...               +.++.+.++                 ...+.+..++.+.+|+....  
T Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~i~~~d~~~~--  237 (425)
T 1r5m_A          177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-----------------DKFVIPGPKGAIFVYQITEK--  237 (425)
T ss_dssp             ETTTTEEEEEECCC---------------CCCBSCCEEEET-----------------TEEEEECGGGCEEEEETTCS--
T ss_pred             ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-----------------CEEEEEcCCCeEEEEEcCCC--
Confidence            99999988887766554               333333221                 12345566777888877642  


Q ss_pred             cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126          377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (493)
Q Consensus       377 ~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (493)
                        +++..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |...|++++|+| ++ +|++++.||.|+
T Consensus       238 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~  313 (425)
T 1r5m_A          238 --TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVR  313 (425)
T ss_dssp             --SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEE
T ss_pred             --ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEE
Confidence              4567788999999999999999 99999999999999999999888886 999999999999 77 999999999999


Q ss_pred             EEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          455 IWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       455 IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +||+++++.+. +..|...|++++|+|+|++|++++.|.
T Consensus       314 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  352 (425)
T 1r5m_A          314 LWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG  352 (425)
T ss_dssp             EEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             EEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence            99999988774 677889999999999999999998775

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=1.3e-25  Score=219.31  Aligned_cols=246  Identities=19%  Similarity=0.284  Sum_probs=187.1

Q ss_pred             ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~  318 (493)
                      +.++|++++ +||+| .|++|+|||+.+.....     ...+.+|...|++++|+|++++|++|+.||+|++|++.+++.
T Consensus        29 ~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~-----~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQ-----LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEE-----EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eEEEECCCC-EEEEE-eCCEEEEEECCCCCEEE-----EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence            558999886 77776 59999999988654211     112457888999999999999999999999999999999999


Q ss_pred             eeeeeccCCCCceEEEeeC------CCCceeeeeccCc------------c-------ccceeeeecCCCceEEEcCCCc
Q 011126          319 LDGFDVQDTDPSCLYFTIN------HLSQLIPIDVDKE------------K-------IDKTKSLRKSSDLTCVVLPPKV  373 (493)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------------~-------~~~~~~~~~s~~~~~~~~~~~~  373 (493)
                      +..+..+.....+......      ....+........            .       ......+.++.++.+.+|+...
T Consensus       102 ~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence            8888776654433322110      0001111100000            0       0112335667778888888766


Q ss_pred             eeecccceEEEecCCCCEeEEEEeCCC----eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe-
Q 011126          374 FRLLEKPLHEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-  448 (493)
Q Consensus       374 ~~~~~~~~~~~~~h~~~V~~l~~sp~g----~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-  448 (493)
                      .............|.+.|.+++++|.+    .+++++.+++|++||...........+...+..+.|+| ++..+++++ 
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~sg  260 (318)
T 4ggc_A          182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHG  260 (318)
T ss_dssp             BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEET-TTTEEEEEEC
T ss_pred             CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecc-cccceEEEEE
Confidence            555555667778899999999999976    33567789999999999999998888999999999999 788777654 


Q ss_pred             -CCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          449 -IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       449 -~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                       .|+.|+|||+++++++ .+.+|...|++++|+|||++|++++.|+
T Consensus       261 ~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~  306 (318)
T 4ggc_A          261 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE  306 (318)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTT
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC
Confidence             7999999999999887 5788999999999999999999999886

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.6e-26  Score=220.63  Aligned_cols=248  Identities=18%  Similarity=0.218  Sum_probs=187.8

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (493)
                      ...+.+|.+.+.+++| |++.+|++|+.||.|+||++....       ....+..|...|.+++|+|++++|++++.||.
T Consensus        11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   82 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-------LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM   82 (313)
T ss_dssp             EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-------EEEEEEECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-------EEEEeecCCccEEEEEECCCCCEEEEecCCCe
Confidence            3456778888999999 999999999999999999986433       23456789999999999999999999999999


Q ss_pred             EEEEecCCC---eeeeeeeccCCCCceEEEee------CCCCceeeee---------ccCccc--------cceeeeecC
Q 011126          308 VRVWKVIEH---ERLDGFDVQDTDPSCLYFTI------NHLSQLIPID---------VDKEKI--------DKTKSLRKS  361 (493)
Q Consensus       308 V~iWdl~~~---~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---------~~~~~~--------~~~~~~~~s  361 (493)
                      |++|++...   +.+..+..+...+.++.+..      .....+..++         .....+        .....+.++
T Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  162 (313)
T 3odt_A           83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTAS  162 (313)
T ss_dssp             EEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEE
Confidence            999998654   44555555555555555411      0011111111         000000        011223444


Q ss_pred             CCceEEEcCCCceeecccceEEEec-CCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccC
Q 011126          362 SDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV  439 (493)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~  439 (493)
                      .++.+.+|+      ..+....+.. |...|.+++|+|++.+++++.|+.|++||+++++++..+. |...|++++|+| 
T Consensus       163 ~d~~i~i~d------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-  235 (313)
T 3odt_A          163 ADKTIKLWQ------NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-  235 (313)
T ss_dssp             TTSCEEEEE------TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-
T ss_pred             CCCCEEEEe------cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-
Confidence            555566665      2345666777 9999999999999999999999999999999999998887 999999999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          440 DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       440 d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ++ .|++++.||.|++||+.+++.+ .+..|...|++++|+|+|+++ +++.|.
T Consensus       236 ~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~dg  287 (313)
T 3odt_A          236 NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDII-VGSSDN  287 (313)
T ss_dssp             TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEE-EEETTS
T ss_pred             CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEE-EEeCCC
Confidence            77 6899999999999999999877 467788899999999999954 566654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=3.1e-26  Score=227.76  Aligned_cols=254  Identities=14%  Similarity=0.197  Sum_probs=180.3

Q ss_pred             CceeeeecccccceeccC---CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC
Q 011126          229 GAMARIIDRHGSATLKPG---DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (493)
Q Consensus       229 ~~~~~~~~~~~~~~fsp~---g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D  305 (493)
                      ..+..|.+.+.+++|+|+   |.+|++|+.||.|+||++......+     ...+.+|.+.|++++|+|++++|++++.|
T Consensus        33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  107 (368)
T 3mmy_A           33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI-----PKAQQMHTGPVLDVCWSDDGSKVFTASCD  107 (368)
T ss_dssp             ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE-----EEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee-----EEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence            355678889999999999   6999999999999999997532221     23578899999999999999999999999


Q ss_pred             CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccce-------------------------eeeec
Q 011126          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT-------------------------KSLRK  360 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~  360 (493)
                      |.|++||+.+++.+. +..+...+.++.+.+......+......+.+..+                         ..+..
T Consensus       108 g~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVA  186 (368)
T ss_dssp             SEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEE
T ss_pred             CcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEE
Confidence            999999999988765 4445666677776433333222211111100000                         00111


Q ss_pred             CCCceEEEcCCCceeecccceEEE-ecCCCCEeEEEEeCCC-----eEEEEeCCCeEEEEECCCC---cEEEEec-CCC-
Q 011126          361 SSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGID---RCLRVFS-HNN-  429 (493)
Q Consensus       361 s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~g-----~l~sgs~Dg~V~lWd~~~~---~~~~~~~-h~~-  429 (493)
                      ..++.+.+|+......   ..... ..+...+.++++.++.     .+++++.|+.|++||+...   ..+..+. |.. 
T Consensus       187 ~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  263 (368)
T 3mmy_A          187 TAERGLIVYQLENQPS---EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN  263 (368)
T ss_dssp             EGGGCEEEEECSSSCE---EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred             eCCCcEEEEEeccccc---hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence            1222233332221110   01111 1233455666666554     3999999999999999887   4455554 443 


Q ss_pred             -----------cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          430 -----------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       430 -----------~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                                 .|++++|+| ++++|++|+.||.|+|||+.+++.+ .+..|...|++++|+|+|++|++++.|.
T Consensus       264 ~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          264 GTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             ----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred             cccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence                       799999999 9999999999999999999999877 4778899999999999999999998764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=1.9e-26  Score=232.80  Aligned_cols=276  Identities=14%  Similarity=0.127  Sum_probs=206.6

Q ss_pred             ccccCC-CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceeccC----C-
Q 011126          174 LQESGS-SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPG----D-  247 (493)
Q Consensus       174 lr~v~~-~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp~----g-  247 (493)
                      |..+.+ .+.|+....++.+.     +|.+...+....              ......+..|...+.+++|+|+    + 
T Consensus        19 i~~~~~~~~~l~s~~~dg~i~-----iw~~~~~~~~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~~~g~   79 (397)
T 1sq9_A           19 IFSVSACNSFTVSCSGDGYLK-----VWDNKLLDNENP--------------KDKSYSHFVHKSGLHHVDVLQAIERDAF   79 (397)
T ss_dssp             EEEEEECSSEEEEEETTSEEE-----EEESBCCTTCCG--------------GGGEEEEECCTTCEEEEEEEEEEETTTE
T ss_pred             eEEEEecCCeEEEEcCCCEEE-----EEECCCcccccC--------------CCcceEEecCCCcEEEEEEecccccCCc
Confidence            444444 34555565665555     777654321110              1122334566777888999999    9 


Q ss_pred             --CeEEeeecCCeEEEEECCCccccccccccceeeecc-----cCCEEEEEEc----cCCCE-EEEEECCCcEEEEecCC
Q 011126          248 --HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-----EGSILTMKFS----LDGQY-LASGGEDGTVRVWKVIE  315 (493)
Q Consensus       248 --~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H-----~~~I~~l~fs----pdg~~-Lasgs~Dg~V~iWdl~~  315 (493)
                        .+|++++.|+.|++|++.......  ......+..|     ...|.+++|+    |++++ |++++.||.|++||+.+
T Consensus        80 ~~~~l~s~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           80 ELCLVATTSFSGDLLFYRITREDETK--KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             EEEEEEEEETTSCEEEEEEEECTTTC--CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred             cccEEEEEcCCCCEEEEEccCCcccc--cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence              999999999999999987554211  1113456778     5999999999    99999 99999999999999988


Q ss_pred             ------Ceeee-----eee-------ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeec
Q 011126          316 ------HERLD-----GFD-------VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL  377 (493)
Q Consensus       316 ------~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  377 (493)
                            ++.+.     .+.       .+...+.++.+.+..                 ..+.++.++.+.+|+...    
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~l~~~~~dg~i~i~d~~~----  216 (397)
T 1sq9_A          158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-----------------LIATGFNNGTVQISELST----  216 (397)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-----------------EEEEECTTSEEEEEETTT----
T ss_pred             cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-----------------eEEEEeCCCcEEEEECCC----
Confidence                  55544     442       234445555544432                 334556777888887764    


Q ss_pred             ccceEEEec---C---CCCEeEEEEeCCC-eEEEEeCC---CeEEEEECCCCcEEEEec--------------CCCcEEE
Q 011126          378 EKPLHEFQG---H---SSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFS--------------HNNYVTS  433 (493)
Q Consensus       378 ~~~~~~~~~---h---~~~V~~l~~sp~g-~l~sgs~D---g~V~lWd~~~~~~~~~~~--------------h~~~V~~  433 (493)
                      .+++..+..   |   ...|.+++|+|++ +|++++.|   +.|++||+++++++..+.              |...|++
T Consensus       217 ~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  296 (397)
T 1sq9_A          217 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS  296 (397)
T ss_dssp             TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEE
T ss_pred             CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEE
Confidence            345677788   9   9999999999999 99999999   999999999999888885              8899999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec------CC---------------CCCeEEEEEccCC---------
Q 011126          434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT------DI---------------REIVSAVCYCPDG---------  482 (493)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~------~~---------------~~~I~sv~~spdG---------  482 (493)
                      ++|+| ++++|++++.||.|+|||+.+++.+. +.      .|               ...|++++|+|+|         
T Consensus       297 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~  375 (397)
T 1sq9_A          297 LSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADL  375 (397)
T ss_dssp             EEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTT
T ss_pred             EEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccc
Confidence            99999 99999999999999999999998774 55      56               8999999999999         


Q ss_pred             -CEEEEeecCC
Q 011126          483 -KVRQNSACNF  492 (493)
Q Consensus       483 -~~l~s~s~d~  492 (493)
                       ++|++++.|+
T Consensus       376 ~~~l~s~~~dg  386 (397)
T 1sq9_A          376 NESLCCVCLDR  386 (397)
T ss_dssp             SCEEEEEETTT
T ss_pred             cceEEEecCCC
Confidence             7999998775

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=1.5e-25  Score=226.34  Aligned_cols=245  Identities=18%  Similarity=0.235  Sum_probs=190.0

Q ss_pred             ceeeeecccccceecc-CCCeEEeeecCCeEEEEECCCcccccccccc------ceeeecccCCEEEEEEcc-CCCEEEE
Q 011126          230 AMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYT------GQEFLAHEGSILTMKFSL-DGQYLAS  301 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~------~~~l~~H~~~I~~l~fsp-dg~~Las  301 (493)
                      .+..|.+.+.+++|+| ++++|++|+.||.|+||++............      .....+|...|.+++|+| ++.+|++
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  117 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS  117 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence            3556788899999999 9999999999999999999865533211000      001136999999999999 7889999


Q ss_pred             EECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126          302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (493)
Q Consensus       302 gs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (493)
                      ++.||.|++||+.+++....+.. ......+.+.+...             .....+.+..++.+.+|+...    .+.+
T Consensus       118 ~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~v~~~d~~~----~~~~  179 (408)
T 4a11_B          118 SSFDKTLKVWDTNTLQTADVFNF-EETVYSHHMSPVST-------------KHCLVAVGTRGPKVQLCDLKS----GSCS  179 (408)
T ss_dssp             EETTSEEEEEETTTTEEEEEEEC-SSCEEEEEECSSCS-------------SCCEEEEEESSSSEEEEESSS----SCCC
T ss_pred             EeCCCeEEEeeCCCCccceeccC-CCceeeeEeecCCC-------------CCcEEEEEcCCCeEEEEeCCC----ccee
Confidence            99999999999999988777663 23333444433221             112334556667788887654    2456


Q ss_pred             EEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc-EEEEe----------------cCCCcEEEEEEccCCCC
Q 011126          382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-CLRVF----------------SHNNYVTSVAFNPVDDN  442 (493)
Q Consensus       382 ~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~-~~~~~----------------~h~~~V~~v~fsp~d~~  442 (493)
                      ..+.+|...|.+++|+|++  +|++++.|+.|++||++.+. ++..+                .|...|++++|+| +++
T Consensus       180 ~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~  258 (408)
T 4a11_B          180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGL  258 (408)
T ss_dssp             EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSS
T ss_pred             eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCC
Confidence            7788999999999999998  58999999999999998765 33333                3888999999999 999


Q ss_pred             EEEEEeCCCeEEEEeCCCCe-----------------------------------------------EE-EecCCCCCeE
Q 011126          443 YFISGSIDGKVRIWEVRRCQ-----------------------------------------------VV-DYTDIREIVS  474 (493)
Q Consensus       443 ~l~sgs~Dg~V~IWdl~~~~-----------------------------------------------~~-~~~~~~~~I~  474 (493)
                      +|++++.||.|++||+.+++                                               .+ .+..|...|+
T Consensus       259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~  338 (408)
T 4a11_B          259 HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVD  338 (408)
T ss_dssp             EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEE
T ss_pred             EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEE
Confidence            99999999999999997643                                               12 3456889999


Q ss_pred             EEEEccCCCEEEEeecCCC
Q 011126          475 AVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       475 sv~~spdG~~l~s~s~d~~  493 (493)
                      +++|+|+|++|++++.|++
T Consensus       339 ~~~~s~~~~~l~s~~~dg~  357 (408)
T 4a11_B          339 CCVFQSNFQELYSGSRDCN  357 (408)
T ss_dssp             EEEEETTTTEEEEEETTSC
T ss_pred             EEEEcCCCCEEEEECCCCe
Confidence            9999999999999998763

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.9e-26  Score=234.17  Aligned_cols=237  Identities=11%  Similarity=0.210  Sum_probs=190.0

Q ss_pred             eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEe
Q 011126          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWK  312 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWd  312 (493)
                      |...+.+++|+|++.+|++|+.||.|+||++......   ......+.+|...|++++|+|+ +++|++++.||.|++||
T Consensus        66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  142 (416)
T 2pm9_A           66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA---INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD  142 (416)
T ss_dssp             CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC---CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred             cCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc---ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence            4567778999999999999999999999999763211   1133457789999999999998 89999999999999999


Q ss_pred             cCCCe------eeeee---eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126          313 VIEHE------RLDGF---DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (493)
Q Consensus       313 l~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (493)
                      +.+++      ....+   ..+...+.++.+.+....               ..+.++.++.+.+|+.....    ++..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------------~l~~~~~dg~v~iwd~~~~~----~~~~  203 (416)
T 2pm9_A          143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAH---------------VFASAGSSNFASIWDLKAKK----EVIH  203 (416)
T ss_dssp             TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTT---------------EEEEESSSSCEEEEETTTTE----EEEE
T ss_pred             CCCCccccccccccccccccCCCCCeeEEEeCCCCCc---------------EEEEEcCCCCEEEEECCCCC----cceE
Confidence            98876      32222   344555666666554322               23345667778888776532    3455


Q ss_pred             EecC------CCCEeEEEEeCCC--eEEEEeCCC---eEEEEECCCC-cEEEEec--CCCcEEEEEEccCCCCEEEEEeC
Q 011126          384 FQGH------SSEVLDLSWSKNG--FLLSSSADK---TVRLWQVGID-RCLRVFS--HNNYVTSVAFNPVDDNYFISGSI  449 (493)
Q Consensus       384 ~~~h------~~~V~~l~~sp~g--~l~sgs~Dg---~V~lWd~~~~-~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~  449 (493)
                      +..|      ...|.+++|+|++  +|++++.|+   .|++||++++ .++..+.  |...|++++|+|.++++|++++.
T Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~  283 (416)
T 2pm9_A          204 LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR  283 (416)
T ss_dssp             ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES
T ss_pred             EeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC
Confidence            5555      7899999999997  899999999   9999999986 5666665  89999999999978899999999


Q ss_pred             CCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCC-CEEEEeecCC
Q 011126          450 DGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG-KVRQNSACNF  492 (493)
Q Consensus       450 Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG-~~l~s~s~d~  492 (493)
                      ||+|++||+++++.+ .+..|...|++++|+|++ ++|++++.|.
T Consensus       284 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~  328 (416)
T 2pm9_A          284 DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN  328 (416)
T ss_dssp             SSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS
T ss_pred             CCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC
Confidence            999999999998877 477899999999999999 8999988775

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=5.9e-26  Score=231.21  Aligned_cols=243  Identities=13%  Similarity=0.218  Sum_probs=186.9

Q ss_pred             eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (493)
Q Consensus       232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW  311 (493)
                      ..|...+.+++|+|++++|++|+.|+.|++|++....       ....+.+|...|++++|+|++++|++++.||+|++|
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw  208 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW  208 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-------CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEe
Confidence            3566778889999999999999999999999987543       334678999999999999999999999999999999


Q ss_pred             ecCCCeeeeeeecc---CCCCceEEEeeCCCCce--------eeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126          312 KVIEHERLDGFDVQ---DTDPSCLYFTINHLSQL--------IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (493)
Q Consensus       312 dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (493)
                      |+.+++.+..+..+   ...+..+.+.+.....+        ..+.+..   .....+.++.++.+.+|+.....    .
T Consensus       209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~----~  281 (420)
T 3vl1_A          209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT---YGKYVIAGHVSGVITVHNVFSKE----Q  281 (420)
T ss_dssp             ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC---TTEEEEEEETTSCEEEEETTTCC----E
T ss_pred             ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC---CCCEEEEEcCCCeEEEEECCCCc----e
Confidence            99999988888753   33445555554433221        1111111   12344667778888888876533    2


Q ss_pred             eEEE-ecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcE-EEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126          381 LHEF-QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC-LRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (493)
Q Consensus       381 ~~~~-~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~-~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (493)
                      +..+ .+|...|.+++|+|++  +|++++.|+.|++||+++++. +..+.  |...|+++.| | ++++|++++.||+|+
T Consensus       282 ~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~  359 (420)
T 3vl1_A          282 TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIK  359 (420)
T ss_dssp             EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEE
T ss_pred             eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEE
Confidence            3333 4688999999999998  899999999999999998754 55554  7788888865 5 678999999999999


Q ss_pred             EEeCCCC----------eEEEecCCCCCeEEEEEccCCC---EEEEeec
Q 011126          455 IWEVRRC----------QVVDYTDIREIVSAVCYCPDGK---VRQNSAC  490 (493)
Q Consensus       455 IWdl~~~----------~~~~~~~~~~~I~sv~~spdG~---~l~s~s~  490 (493)
                      +|++...          .......+...|.+++|+|+|+   .+++.+.
T Consensus       360 iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~  408 (420)
T 3vl1_A          360 LDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK  408 (420)
T ss_dssp             EEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred             EEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence            9998762          2234667888999999999999   4544443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.1e-27  Score=240.36  Aligned_cols=251  Identities=10%  Similarity=0.161  Sum_probs=184.8

Q ss_pred             eeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          232 ARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       232 ~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      .+|.+.+.+++|+| ++.+||+|+.||+|+||++....... .......+ +|.+.|++|+|+|++++|++|+.||+|++
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~v  137 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIV  137 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence            45667888899999 99999999999999999986522111 11112222 59999999999999999999999999999


Q ss_pred             EecC---CCeeeeeeeccCCCCceEEEeeC-CCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126          311 WKVI---EHERLDGFDVQDTDPSCLYFTIN-HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (493)
Q Consensus       311 Wdl~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (493)
                      ||+.   +++....+..+  .+..+.+.+. ....+..+.... .......+.++.++.+.+|+....    +++..+.+
T Consensus       138 wd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~  210 (437)
T 3gre_A          138 LKVNHYQQESEVKFLNCE--CIRKINLKNFGKNEYAVRMRAFV-NEEKSLLVALTNLSRVIIFDIRTL----ERLQIIEN  210 (437)
T ss_dssp             EEEEEEEETTEEEEEEEE--EEEEEEGGGGSSCCCEEEEEEEE-CSSCEEEEEEETTSEEEEEETTTC----CEEEEEEC
T ss_pred             EEeccccCCceeeccccc--eeEEEEccCcccccCceEEEEEE-cCCCCEEEEEeCCCeEEEEeCCCC----eeeEEEcc
Confidence            9994   55544433322  1111111111 111111111100 011234566777889999987653    44677777


Q ss_pred             --CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe--cCCCcEEEEEEccC---CCCEEEEEeCCCeEEEEeC
Q 011126          387 --HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV---DDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       387 --h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~--~h~~~V~~v~fsp~---d~~~l~sgs~Dg~V~IWdl  458 (493)
                        |...|++++|+|++ +|++|+.|++|++||+++++++..+  .|...|++++|+|.   ++.+|++|+.||.|+|||+
T Consensus       211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~  290 (437)
T 3gre_A          211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF  290 (437)
T ss_dssp             CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred             CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence              89999999999999 9999999999999999999999987  57889999977651   5779999999999999999


Q ss_pred             CCCeEEE-ecC--------------------------CCCCeEEEEEccCCCEEEEeecCC
Q 011126          459 RRCQVVD-YTD--------------------------IREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       459 ~~~~~~~-~~~--------------------------~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ++++.+. +..                          |...|++++|+ ++++|++++.|+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~  350 (437)
T 3gre_A          291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS  350 (437)
T ss_dssp             TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT
T ss_pred             CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC
Confidence            9887653 221                          55668999999 788999998775

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.95  E-value=2.4e-25  Score=230.20  Aligned_cols=244  Identities=18%  Similarity=0.287  Sum_probs=194.9

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+.+|.+.+.. ++.+++.+|++|+.||+|++|++....       ....+.+|.+.|++++|+|++ +|++|+.||+|+
T Consensus       116 ~l~~h~~~v~~-~~~~~~~~l~sgs~dg~i~vwd~~~~~-------~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          116 TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR  186 (464)
T ss_dssp             EEECCSSSCEE-EEEEETTEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred             EEcCCCCCcEE-EEEECCCEEEEEcCCCcEEEEECCCCc-------EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence            45566555432 455577899999999999999987543       334578999999999999988 999999999999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCcee----------eeeccCccc---------------------------
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI----------PIDVDKEKI---------------------------  352 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~---------------------------  352 (493)
                      +||+.+++.+..+..+...+.++.+.+......+          .++......                           
T Consensus       187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence            9999999999999888888888877764332222          222211110                           


Q ss_pred             ------------cceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC
Q 011126          353 ------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID  419 (493)
Q Consensus       353 ------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~  419 (493)
                                  .....+.++.++.+.+|+...    .+++..+.+|...|.+++|+|++ +|++|+.|++|++||+.++
T Consensus       267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ----MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             CCCSSCEEEEEEETTEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             cCccceEEEEcCCCCEEEEEeCCCeEEEEECCC----CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence                        011234556677777777654    34577888999999999999998 9999999999999999999


Q ss_pred             cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126          420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       420 ~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      +++..+. |...|++++|++   .+|++|+.||+|++||+.+++......+...+..++|+|+++++++++
T Consensus       343 ~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          343 ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             EEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE
T ss_pred             cEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec
Confidence            9999986 999999999964   799999999999999999988776566777888999999999999987

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=4.6e-26  Score=230.07  Aligned_cols=246  Identities=13%  Similarity=0.087  Sum_probs=194.0

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC----C---CEEE
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----G---QYLA  300 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g---~~La  300 (493)
                      ...+.+|.+.+.+++|+|  .+|++|+.||.|+||++...... ........+.+|...|++++|+|+    +   ++|+
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-cCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            344667888999999999  89999999999999999865421 122344567899999999999999    9   9999


Q ss_pred             EEECCCcEEEEecCCCee-----eeeeecc-----CCCCceEEEe----eCCCCceeeeeccCccccceeeeecCCCceE
Q 011126          301 SGGEDGTVRVWKVIEHER-----LDGFDVQ-----DTDPSCLYFT----INHLSQLIPIDVDKEKIDKTKSLRKSSDLTC  366 (493)
Q Consensus       301 sgs~Dg~V~iWdl~~~~~-----~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  366 (493)
                      +++.||.|++|++.+++.     ...+..+     ...+.++.+.    +....               ..+.++.++.+
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------------~l~~~~~dg~i  150 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH---------------RLVATDVKGTT  150 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CE---------------EEEEEETTSCE
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCce---------------EEEEEeCCCcE
Confidence            999999999999988876     6666666     3556666665    33311               12344456667


Q ss_pred             EEcCCCc------eeec-ccceEEE-------ecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec----C-
Q 011126          367 VVLPPKV------FRLL-EKPLHEF-------QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----H-  427 (493)
Q Consensus       367 ~~~~~~~------~~~~-~~~~~~~-------~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~----h-  427 (493)
                      .+|+...      .... ..+...+       ..|...|.+++|+|+++|++++.|+.|++||+++++++..+.    | 
T Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~  230 (397)
T 1sq9_A          151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMI  230 (397)
T ss_dssp             EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred             EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEecccccc
Confidence            7776544      1111 1122255       448999999999998888899999999999999999988886    5 


Q ss_pred             --CCcEEEEEEccCCCCEEEEEeCC---CeEEEEeCCCCeEEE-ecC-------------CCCCeEEEEEccCCCEEEEe
Q 011126          428 --NNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVVD-YTD-------------IREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       428 --~~~V~~v~fsp~d~~~l~sgs~D---g~V~IWdl~~~~~~~-~~~-------------~~~~I~sv~~spdG~~l~s~  488 (493)
                        ...|++++|+| ++++|++++.|   |.|++||+++++.+. +..             |...|++++|+|+|++|+++
T Consensus       231 ~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  309 (397)
T 1sq9_A          231 NNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  309 (397)
T ss_dssp             CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             ccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE
Confidence              89999999999 99999999999   999999999988774 555             89999999999999999999


Q ss_pred             ecCC
Q 011126          489 ACNF  492 (493)
Q Consensus       489 s~d~  492 (493)
                      +.|+
T Consensus       310 ~~dg  313 (397)
T 1sq9_A          310 GWDG  313 (397)
T ss_dssp             ETTS
T ss_pred             eCCC
Confidence            8775

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=1.9e-26  Score=236.68  Aligned_cols=239  Identities=13%  Similarity=0.252  Sum_probs=180.2

Q ss_pred             cccccceeccCC--CeEEeeecCCeEEEEECCCcccccc------------------ccc--------------ccee-e
Q 011126          236 DRHGSATLKPGD--HELTLGQRMRRVRVHPVKKQSRELS------------------SLY--------------TGQE-F  280 (493)
Q Consensus       236 ~~~~~~~fsp~g--~~lasgs~dg~V~vwd~~~~~~~~~------------------~~~--------------~~~~-l  280 (493)
                      ..+.+++|+|++  .+|++++.|+.|+||++........                  .+.              .... .
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            678889999998  7999999999999999875332100                  000              0012 3


Q ss_pred             ecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC-eeeee-------eeccCCCCceEEEeeCCCCceeeeeccCccc
Q 011126          281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH-ERLDG-------FDVQDTDPSCLYFTINHLSQLIPIDVDKEKI  352 (493)
Q Consensus       281 ~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (493)
                      .+|...|++++|+|++++|++| .|+.|++||+.+. ..+..       +..+...+.++.|.+.+..            
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~------------  240 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN------------  240 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT------------
T ss_pred             cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc------------
Confidence            6899999999999999999998 8999999999843 33332       3344444555555544322            


Q ss_pred             cceeeeecCCCceEEEcCCCceeecccceEEEecCCC------------CEeEEEEeCCC-eEEEEeCCCeEEEEECCC-
Q 011126          353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS------------EVLDLSWSKNG-FLLSSSADKTVRLWQVGI-  418 (493)
Q Consensus       353 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~-  418 (493)
                         ..+.++.++.+.+|+.+........+..+.+|..            .|.+++|+|++ +|++++. ++|+|||++. 
T Consensus       241 ---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~  316 (447)
T 3dw8_B          241 ---TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME  316 (447)
T ss_dssp             ---EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC
T ss_pred             ---EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC
Confidence               2345566778888887765544444677788876            99999999999 8999998 9999999997 


Q ss_pred             CcEEEEec-CCCc---------------EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec---------------
Q 011126          419 DRCLRVFS-HNNY---------------VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT---------------  467 (493)
Q Consensus       419 ~~~~~~~~-h~~~---------------V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~---------------  467 (493)
                      ++++..+. |...               +..++|+| ++.+|++|+.||.|+|||+.+++.+.+.               
T Consensus       317 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  395 (447)
T 3dw8_B          317 NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPR  395 (447)
T ss_dssp             SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCC
T ss_pred             ccccceeeccccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCc
Confidence            88887776 4321               33499999 9999999999999999999998876533               


Q ss_pred             ------------------CCCCCeEEEEEccCCCEEEEeecCC
Q 011126          468 ------------------DIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       468 ------------------~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                                        .+...|..++|+|+|.+|++++.+.
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          396 KVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             CEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred             cccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence                              3345789999999999999998764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.94  E-value=1.3e-25  Score=230.91  Aligned_cols=246  Identities=17%  Similarity=0.248  Sum_probs=191.0

Q ss_pred             ceeeeecccccceeccC-CCeEEeeecCCeEEEEECCCccccc---cccccceeeecccCCEEEEEEccCCC-EEEEEEC
Q 011126          230 AMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSREL---SSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGE  304 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~---~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~  304 (493)
                      ....|...+.+++|+|+ +.+||+++.+|.|+||++.......   ........+.+|...|++|+|+|++. +|++|+.
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            34567788899999997 6899999999999999987532111   11334457889999999999999988 9999999


Q ss_pred             CCcEEEEecCCCee-------eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeec
Q 011126          305 DGTVRVWKVIEHER-------LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL  377 (493)
Q Consensus       305 Dg~V~iWdl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  377 (493)
                      ||.|++|++.++..       ...+..+...+.++.|.+....               ..+.++.++.+.+|+.+.... 
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~---------------~l~s~~~dg~i~i~d~~~~~~-  266 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES---------------LFGSVADDQKLMIWDTRNNNT-  266 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT---------------EEEEEETTSEEEEEETTCSCS-
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC---------------EEEEEeCCCeEEEEECCCCCC-
Confidence            99999999987432       2233344444555555443322               233455677888887764321 


Q ss_pred             ccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC-CcEEEEec-CCCcEEEEEEccCCC-CEEEEEeCCCe
Q 011126          378 EKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDD-NYFISGSIDGK  452 (493)
Q Consensus       378 ~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~-~~~~~~~~-h~~~V~~v~fsp~d~-~~l~sgs~Dg~  452 (493)
                      .+++..+..|...|++|+|+|++  +|++|+.|++|++||++. ..++..+. |...|++++|+| ++ .+|++++.||.
T Consensus       267 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp-~~~~~l~s~~~d~~  345 (430)
T 2xyi_A          267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRR  345 (430)
T ss_dssp             SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS-SCTTEEEEEETTSC
T ss_pred             CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC-CCCCEEEEEeCCCc
Confidence            24567778999999999999988  689999999999999997 56677775 999999999999 66 58999999999


Q ss_pred             EEEEeCCC--------------CeEE-EecCCCCCeEEEEEccCCC-EEEEeecCC
Q 011126          453 VRIWEVRR--------------CQVV-DYTDIREIVSAVCYCPDGK-VRQNSACNF  492 (493)
Q Consensus       453 V~IWdl~~--------------~~~~-~~~~~~~~I~sv~~spdG~-~l~s~s~d~  492 (493)
                      |+|||+..              .+++ ....|...|++++|+|+++ +|++++.|+
T Consensus       346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg  401 (430)
T 2xyi_A          346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN  401 (430)
T ss_dssp             CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence            99999987              2343 5678899999999999999 777777664

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.94  E-value=1.2e-25  Score=228.59  Aligned_cols=229  Identities=16%  Similarity=0.261  Sum_probs=189.5

Q ss_pred             eecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl  313 (493)
                      +...+.+++|+|++.+|++|+.||.|+||++....       ....+.+|...|.+++|  ++++|++|+.||.|++||+
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~  203 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-------KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDV  203 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-------EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEec
Confidence            34567779999999999999999999999987543       23457789999999999  4679999999999999999


Q ss_pred             C-CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126          314 I-EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (493)
Q Consensus       314 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (493)
                      . ....+..+..+...+.++.+.++.                ...+.++.++.+.+|+...    .+++..+.+|...|.
T Consensus       204 ~~~~~~~~~~~~~~~~v~~~~~~~~~----------------~~l~s~~~d~~v~iwd~~~----~~~~~~~~~~~~~v~  263 (401)
T 4aez_A          204 RIANHQIGTLQGHSSEVCGLAWRSDG----------------LQLASGGNDNVVQIWDARS----SIPKFTKTNHNAAVK  263 (401)
T ss_dssp             TSSSCEEEEEECCSSCEEEEEECTTS----------------SEEEEEETTSCEEEEETTC----SSEEEEECCCSSCCC
T ss_pred             ccCcceeeEEcCCCCCeeEEEEcCCC----------------CEEEEEeCCCeEEEccCCC----CCccEEecCCcceEE
Confidence            8 455566666666666666665532                1234456677888887764    345677889999999


Q ss_pred             EEEEeCCC--eEEEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE--eCCCeEEEEeCCCCeEE--
Q 011126          393 DLSWSKNG--FLLSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG--SIDGKVRIWEVRRCQVV--  464 (493)
Q Consensus       393 ~l~~sp~g--~l~sgs--~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg--s~Dg~V~IWdl~~~~~~--  464 (493)
                      +++|+|++  ++++++  .|+.|++||+.+++++..+.+...|++++|+| ++.+|+++  +.||.|+|||+.+++..  
T Consensus       264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~  342 (401)
T 4aez_A          264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQ  342 (401)
T ss_dssp             EEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred             EEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccceeE
Confidence            99999987  677765  79999999999999999999999999999999 99999994  48999999999987654  


Q ss_pred             -EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          465 -DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       465 -~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                       .+..|...|++++|+|+|++|++++.|+
T Consensus       343 ~~~~~h~~~v~~~~~s~dg~~l~s~~~dg  371 (401)
T 4aez_A          343 VDIPAHDTRVLYSALSPDGRILSTAASDE  371 (401)
T ss_dssp             EEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred             EEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence             3678999999999999999999999875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=5e-26  Score=229.06  Aligned_cols=224  Identities=10%  Similarity=0.075  Sum_probs=164.1

Q ss_pred             eEEeeecCCeEEEEECCCccccccccccc--eeeecccCCEEEEEEccCCCEEEEEE--CCCcEEEEecCCCeeeeeeec
Q 011126          249 ELTLGQRMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGG--EDGTVRVWKVIEHERLDGFDV  324 (493)
Q Consensus       249 ~lasgs~dg~V~vwd~~~~~~~~~~~~~~--~~l~~H~~~I~~l~fspdg~~Lasgs--~Dg~V~iWdl~~~~~~~~~~~  324 (493)
                      .|++|+.|+.+++|++......+......  .....+...+.+++|+|||++|++++  .|++|+|||+.+++.+..+. 
T Consensus        96 ~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-  174 (365)
T 4h5i_A           96 KITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-  174 (365)
T ss_dssp             HHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-
T ss_pred             EEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-
Confidence            44455678899999986554333221111  12234566799999999999987554  78999999999999888876 


Q ss_pred             cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE
Q 011126          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL  403 (493)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~  403 (493)
                      +...+..+.|.+++..  +              +..+.+..+++|.......   ......+|...|.+++|+|++ +++
T Consensus       175 ~~~~V~~v~fspdg~~--l--------------~s~s~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~v~fspdg~~l~  235 (365)
T 4h5i_A          175 TRGEVKDLHFSTDGKV--V--------------AYITGSSLEVISTVTGSCI---ARKTDFDKNWSLSKINFIADDTVLI  235 (365)
T ss_dssp             CSSCCCEEEECTTSSE--E--------------EEECSSCEEEEETTTCCEE---EEECCCCTTEEEEEEEEEETTEEEE
T ss_pred             CCCceEEEEEccCCce--E--------------EeccceeEEEEEeccCcce---eeeecCCCCCCEEEEEEcCCCCEEE
Confidence            4456777777665421  1              1222233333333221111   112345688899999999999 899


Q ss_pred             EEeCCC----eEEEEECCCCcEE----EEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCC
Q 011126          404 SSSADK----TVRLWQVGIDRCL----RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREI  472 (493)
Q Consensus       404 sgs~Dg----~V~lWd~~~~~~~----~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~--~~~~~~~  472 (493)
                      +++.|+    ++++|++......    ..+ .|...|++++|+| ++++||+|+.|++|+|||+.+++++.  ..+|...
T Consensus       236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~  314 (365)
T 4h5i_A          236 AASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFA  314 (365)
T ss_dssp             EEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSC
T ss_pred             EEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCC
Confidence            998887    6889998766542    222 3889999999999 99999999999999999999999874  3679999


Q ss_pred             eEEEEEccCCCEEEEeecCCC
Q 011126          473 VSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       473 I~sv~~spdG~~l~s~s~d~~  493 (493)
                      |++|+|+|||++|++++.|++
T Consensus       315 V~~v~fSpdg~~laS~S~D~t  335 (365)
T 4h5i_A          315 ITEVTISPDSTYVASVSAANT  335 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSE
T ss_pred             EEEEEECCCCCEEEEEeCCCe
Confidence            999999999999999998864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.7e-26  Score=252.66  Aligned_cols=241  Identities=20%  Similarity=0.270  Sum_probs=192.8

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC--CCEEEEEECCCc
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGT  307 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~  307 (493)
                      .+.+|.+.+.+++|+|++++|++|+.||.|+||++.....     .....+.+|.+.|++++|+|+  +++|++|+.||+
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-----~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~   78 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-----EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-----ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence            3567888999999999999999999999999999864322     233467899999999999988  999999999999


Q ss_pred             EEEEecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          308 VRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       308 V~iWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      |++||+.+++  .+..+..+...+.++.+.+....              ...+.++.++.+.+|+......  .....+.
T Consensus        79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~--------------~~l~sgs~dg~I~vwdl~~~~~--~~~~~~~  142 (753)
T 3jro_A           79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG--------------PLLLVASSDGKVSVVEFKENGT--TSPIIID  142 (753)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTSEEEEEECCSSSC--CCCEEEE
T ss_pred             EEEEECCCCcccccccccCCCCCeEEEEECCCCCC--------------CEEEEEeCCCcEEEEEeecCCC--cceeEee
Confidence            9999999887  55566666666666666654211              2234556777888887754322  2345678


Q ss_pred             cCCCCEeEEEEeCC-------------C-eEEEEeCCCeEEEEECCCC----cEEEEec-CCCcEEEEEEccCC---CCE
Q 011126          386 GHSSEVLDLSWSKN-------------G-FLLSSSADKTVRLWQVGID----RCLRVFS-HNNYVTSVAFNPVD---DNY  443 (493)
Q Consensus       386 ~h~~~V~~l~~sp~-------------g-~l~sgs~Dg~V~lWd~~~~----~~~~~~~-h~~~V~~v~fsp~d---~~~  443 (493)
                      +|...|.+++|+|.             + +|++|+.||+|++||++++    .++..+. |...|++++|+| +   +.+
T Consensus       143 ~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~~~  221 (753)
T 3jro_A          143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSY  221 (753)
T ss_dssp             CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEE
T ss_pred             cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc-CCCCCCE
Confidence            89999999999993             6 9999999999999999876    4444554 899999999999 7   899


Q ss_pred             EEEEeCCCeEEEEeCCCCe------EEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          444 FISGSIDGKVRIWEVRRCQ------VVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       444 l~sgs~Dg~V~IWdl~~~~------~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      |++|+.||.|++||+.+++      ......|...|++++|+|+|+++++++.|+
T Consensus       222 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg  276 (753)
T 3jro_A          222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN  276 (753)
T ss_dssp             EEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred             EEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC
Confidence            9999999999999999863      223556888999999999999999998875

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.4e-26  Score=243.69  Aligned_cols=236  Identities=11%  Similarity=0.034  Sum_probs=166.4

Q ss_pred             ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC------CCEEEEEECCCcEEEEecCCCe
Q 011126          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------GQYLASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       244 sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~Lasgs~Dg~V~iWdl~~~~  317 (493)
                      +|++..+++++.|++|+||++.......   ...+.+.+|.+.|+.|+|+|+      +.+||+++.||+|+|||+.++.
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~---~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~  246 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTSTLHC---VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA  246 (524)
T ss_dssp             ------------CEEEEEEEEETTTCCE---EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred             chhhhhhccCCCCceEEEEEccCCCCCc---eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence            3444455556788999999986543211   112346778899999999996      5799999999999999997764


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEE--E
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL--S  395 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~  395 (493)
                      ...........+  ......+...+..+.+...    ...+.++.++.+.+|+....   ..+...+.+|...|++|  +
T Consensus       247 ~~~~~~~~~~~p--~~~l~~h~~~v~sv~~s~~----~~lasgs~DgtV~lWD~~~~---~~~~~~~~~H~~~V~sv~~~  317 (524)
T 2j04_B          247 TDVHVFKMCEKP--SLTLSLADSLITTFDFLSP----TTVVCGFKNGFVAEFDLTDP---EVPSFYDQVHDSYILSVSTA  317 (524)
T ss_dssp             SSSSEEECCCSC--SEEECCTTTCEEEEEESSS----SEEEEEETTSEEEEEETTBC---SSCSEEEECSSSCEEEEEEE
T ss_pred             cccccceeecCc--eEEEEcCCCCEEEEEecCC----CeEEEEeCCCEEEEEECCCC---CCceEEeecccccEEEEEEE
Confidence            321000000000  0001112233444444322    14567888999999988643   23566788999999999  5


Q ss_pred             EeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CC--CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCC
Q 011126          396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDI  469 (493)
Q Consensus       396 ~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~--~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~  469 (493)
                      |+|++  +|+|++.|++|+|||+++++++..+. |.  ..|.+++|+| ++..|++++.|++|++||++++..+ .+.+|
T Consensus       318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH  396 (524)
T 2j04_B          318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSR  396 (524)
T ss_dssp             CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred             cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecC
Confidence            78875  88999999999999999988776654 43  3588999999 8999999999999999999988753 57789


Q ss_pred             CCCeEEEEEccCCCEEEEeecCC
Q 011126          470 REIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       470 ~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ...|++|+|+|+|++|++|+.|+
T Consensus       397 ~~~V~sva~Sp~g~~l~Sgs~Dg  419 (524)
T 2j04_B          397 ETTITAIGVSRLHPMVLAGSADG  419 (524)
T ss_dssp             SSCEEEEECCSSCCBCEEEETTT
T ss_pred             CCceEEEEeCCCCCeEEEEECCC
Confidence            99999999999999999999886

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.94  E-value=2.7e-26  Score=228.23  Aligned_cols=232  Identities=15%  Similarity=0.209  Sum_probs=183.7

Q ss_pred             cccccceeccC----CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEE
Q 011126          236 DRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRV  310 (493)
Q Consensus       236 ~~~~~~~fsp~----g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~i  310 (493)
                      ..+.+++|+|+    +.+|++|+.||.|+||++....       ....+.+|...|++++|+| ++++|++|+.||.|++
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~i  142 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ-------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL  142 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC-------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce-------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            55677999999    6799999999999999987543       2345788999999999999 9999999999999999


Q ss_pred             EecCCCeeeeee---eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeec----------
Q 011126          311 WKVIEHERLDGF---DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL----------  377 (493)
Q Consensus       311 Wdl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~----------  377 (493)
                      ||+.+++.+..+   ..+...+.++.+.++..                ..+.++.++.+.+|+.......          
T Consensus       143 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  206 (366)
T 3k26_A          143 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE----------------KIMSCGMDHSLKLWRINSKRMMNAIKESYDYN  206 (366)
T ss_dssp             EETTTTEEEEEECSTTSCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEESCSHHHHHHHHHHHTCC
T ss_pred             EEeecCeEEEEecccccccCceeEEEECCCCC----------------EEEEecCCCCEEEEECCCCccccccceeEEec
Confidence            999999888777   45555566666554331                2234455666777766532211          


Q ss_pred             --------------ccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcE--------------EEEec-CC
Q 011126          378 --------------EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC--------------LRVFS-HN  428 (493)
Q Consensus       378 --------------~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~--------------~~~~~-h~  428 (493)
                                    ........+|...|.+++|+ ..+|++++.|+.|++||+.+...              +..+. |.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (366)
T 3k26_A          207 PNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ  285 (366)
T ss_dssp             GGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS
T ss_pred             CCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC
Confidence                          11233445699999999999 33999999999999999987643              55554 88


Q ss_pred             CcEEEEEEccCC--CCEEEEEeCCCeEEEEeCCCCe-----EEEecCC--CCCeEEEEEccCCCEEEEeecCC
Q 011126          429 NYVTSVAFNPVD--DNYFISGSIDGKVRIWEVRRCQ-----VVDYTDI--REIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       429 ~~V~~v~fsp~d--~~~l~sgs~Dg~V~IWdl~~~~-----~~~~~~~--~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ..|++++|+| +  +++|++|+.||.|++||+.+++     ...+..|  ...|++++|+|+|++|++++.|+
T Consensus       286 ~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  357 (366)
T 3k26_A          286 CDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA  357 (366)
T ss_dssp             CCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             CcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC
Confidence            8999999999 8  9999999999999999999874     2245666  78999999999999999999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.94  E-value=2e-25  Score=258.47  Aligned_cols=236  Identities=20%  Similarity=0.281  Sum_probs=202.2

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      +.+|.+.+.+++|+|+|++||+|+.||+|+||+..+..       ....+.+|.+.|.+++|+|++++|++|+.||+|+|
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v  683 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-------KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI  683 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-------EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence            45678888999999999999999999999999987554       23457899999999999999999999999999999


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      ||+.+++.+..+..+...+.++.|.+.....              ..+.++.++.+.+|+....    +.+..+.+|...
T Consensus       684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~l~sg~~d~~v~vwd~~~~----~~~~~~~~h~~~  745 (1249)
T 3sfz_A          684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHL--------------LLATGSNDFFLKLWDLNQK----ECRNTMFGHTNS  745 (1249)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSCC--------------EEEEEETTSCEEEEETTSS----SEEEEECCCSSC
T ss_pred             EECCCCceEEEEcCCCCcEEEEEEecCCCce--------------EEEEEeCCCeEEEEECCCc----chhheecCCCCC
Confidence            9999999999998888877777776654332              2345566778888877543    456778899999


Q ss_pred             EeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe--------------------------------------------
Q 011126          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--------------------------------------------  425 (493)
Q Consensus       391 V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~--------------------------------------------  425 (493)
                      |++++|+|++ +|++++.|++|++||+.++.....+                                            
T Consensus       746 v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d  825 (1249)
T 3sfz_A          746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD  825 (1249)
T ss_dssp             EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred             EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence            9999999999 9999999999999998766543322                                            


Q ss_pred             ------------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          426 ------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       426 ------------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                                  .|...|++++|+| ++.++++++.||.|++||+.+++.+ .+..|...|++++|+|+|+++++++.|+
T Consensus       826 ~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg  904 (1249)
T 3sfz_A          826 IHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ  904 (1249)
T ss_dssp             TTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCC
Confidence                        3677899999999 9999999999999999999998877 5788999999999999999999999875

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.6e-25  Score=227.15  Aligned_cols=234  Identities=16%  Similarity=0.169  Sum_probs=192.1

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCC---------------EEEEEEccC
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGS---------------ILTMKFSLD  295 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~---------------I~~l~fspd  295 (493)
                      +..|...+.+++|+|++.+|++++.|+.|++|++.....       .+.+..|...               |.++.|+|+
T Consensus       145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (425)
T 1r5m_A          145 LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV-------MQHFELKETGGSSINAENHSGDGSLGVDVEWVDD  217 (425)
T ss_dssp             ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE-------EEEECCC---------------CCCBSCCEEEET
T ss_pred             ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE-------EEEeeccccCccceeeccccCCcceeeEEEEcCC
Confidence            345667788899999999999999999999999975432       2234455555               999999998


Q ss_pred             CCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee
Q 011126          296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR  375 (493)
Q Consensus       296 g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  375 (493)
                      + .+++++.||.|++||+.+++.+..+..+...+.++.+.++..                ..+.++.++.+.+|+.... 
T Consensus       218 ~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~l~~~~~d~~i~i~d~~~~-  279 (425)
T 1r5m_A          218 D-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK----------------LLLSASDDGTLRIWHGGNG-  279 (425)
T ss_dssp             T-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT----------------EEEEEETTSCEEEECSSSB-
T ss_pred             C-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC----------------EEEEEcCCCEEEEEECCCC-
Confidence            5 588999999999999999888877777766666666655432                2234456677888876643 


Q ss_pred             ecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126          376 LLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (493)
Q Consensus       376 ~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (493)
                         +++..+.+|...|.+++|+|+++|++++.|+.|++||+.+++++..+. |...|++++|+| ++++|++++.||.|+
T Consensus       280 ---~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~  355 (425)
T 1r5m_A          280 ---NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVN  355 (425)
T ss_dssp             ---SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred             ---ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCCeEE
Confidence               456778889999999999999999999999999999999999988886 889999999999 999999999999999


Q ss_pred             EEeCCCCe--------------------EE-EecCCCC--CeEEEEEccCCCEEEEeecCCC
Q 011126          455 IWEVRRCQ--------------------VV-DYTDIRE--IVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       455 IWdl~~~~--------------------~~-~~~~~~~--~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      |||+.+++                    ++ .+..|..  .|++++|+|+|++|++++.|++
T Consensus       356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  417 (425)
T 1r5m_A          356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQE  417 (425)
T ss_dssp             EEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSC
T ss_pred             EEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCce
Confidence            99999877                    55 4677765  9999999999999999988763

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.94  E-value=9.9e-26  Score=227.19  Aligned_cols=209  Identities=15%  Similarity=0.213  Sum_probs=168.6

Q ss_pred             cCceeeeecccccceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECC
Q 011126          228 LGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGED  305 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~D  305 (493)
                      ...+..|...+.+++|+|++ ++|++|+.||.|+||++........     ..+.+|...|.+++|+| ++++|++++.|
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----IQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----ECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----eecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            33566788889999999999 9999999999999999985542211     12347999999999999 78999999999


Q ss_pred             CcEEEEecCCCeeeeeeeccC---CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126          306 GTVRVWKVIEHERLDGFDVQD---TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (493)
                      +.|++||+.+ ..+..+..+.   ..+.++.+.++..                ..+.++.++.+.+|+..     .+++.
T Consensus       141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~i~d~~-----~~~~~  198 (383)
T 3ei3_B          141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ----------------MLATGDSTGRLLLLGLD-----GHEIF  198 (383)
T ss_dssp             TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT----------------EEEEEETTSEEEEEETT-----SCEEE
T ss_pred             CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC----------------EEEEECCCCCEEEEECC-----CCEEE
Confidence            9999999986 4444444332   3344455544321                23455667788888763     45678


Q ss_pred             EEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC----CcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEE
Q 011126          383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI----DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (493)
Q Consensus       383 ~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~----~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IW  456 (493)
                      .+.+|...|.+++|+|++  +|++++.|++|++||+++    +.++..+.|...|++++|+|.++.+|++++.|+.|+||
T Consensus       199 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iw  278 (383)
T 3ei3_B          199 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVY  278 (383)
T ss_dssp             EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEE
T ss_pred             EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEE
Confidence            889999999999999998  799999999999999998    77888889999999999999778999999999999999


Q ss_pred             eCCCCeE
Q 011126          457 EVRRCQV  463 (493)
Q Consensus       457 dl~~~~~  463 (493)
                      |+++++.
T Consensus       279 d~~~~~~  285 (383)
T 3ei3_B          279 SSYDWSK  285 (383)
T ss_dssp             ETTBTTS
T ss_pred             ECCCCcc
Confidence            9997654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=1.9e-25  Score=246.98  Aligned_cols=238  Identities=18%  Similarity=0.236  Sum_probs=201.9

Q ss_pred             CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (493)
Q Consensus       229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V  308 (493)
                      ..+.+|.+.+.+++|+|++.+||+|+.+|.|+||++....       ..+.+.+|.+.|++++|+|++++|++|+.||.|
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence            3567888999999999999999999999999999987543       334678899999999999999999999999999


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      +|||+.+++.+..+..+...+.++.|.+++.                ..+.++.++.+.+|+....   ......+.+|.
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~----------------~l~~~~~dg~i~vw~~~~~---~~~~~~~~~~~  140 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP----------------YVLSGSDDLTVKLWNWENN---WALEQTFEGHE  140 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSS----------------EEEEEETTSEEEEEEGGGT---SEEEEEEECCS
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCC----------------EEEEEcCCCEEEEEECCCC---ceEEEEEcCCC
Confidence            9999999999988888877777777766542                1234556777888765432   13456788999


Q ss_pred             CCEeEEEEeC-CC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccC-CCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          389 SEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       389 ~~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~-d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      ..|.+++|+| ++ .|++++.|++|++||+..+.....+.  +...+++++|+|. ++.+|++|+.||.|++||+.+++.
T Consensus       141 ~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  220 (814)
T 3mkq_A          141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC  220 (814)
T ss_dssp             SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred             CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence            9999999999 66 99999999999999999887777665  4588999999983 678999999999999999999887


Q ss_pred             EE-ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          464 VD-YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       464 ~~-~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +. +..|...|++++|+|+|+++++++.|+
T Consensus       221 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  250 (814)
T 3mkq_A          221 VATLEGHMSNVSFAVFHPTLPIIISGSEDG  250 (814)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            74 677899999999999999999998775

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.94  E-value=8.6e-26  Score=229.59  Aligned_cols=239  Identities=17%  Similarity=0.191  Sum_probs=188.9

Q ss_pred             Cceeeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEEECCC
Q 011126          229 GAMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDG  306 (493)
Q Consensus       229 ~~~~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg  306 (493)
                      ..+.+|...+.+++|+| ++.+|++|+.||.|+||++...............+.+|...|++++|+|++ .+|++|+.||
T Consensus        75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg  154 (402)
T 2aq5_A           75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN  154 (402)
T ss_dssp             CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred             ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence            34566788889999999 999999999999999999986643222223455788999999999999998 6999999999


Q ss_pred             cEEEEecCCCeeeeee--eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          307 TVRVWKVIEHERLDGF--DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                      .|+|||+.+++.+..+  ..+...+.++.+.+++.                ..+.++.++.+.+|+.+..    +.+..+
T Consensus       155 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~iwd~~~~----~~~~~~  214 (402)
T 2aq5_A          155 VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA----------------LICTSCRDKRVRVIEPRKG----TVVAEK  214 (402)
T ss_dssp             CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS----------------CEEEEETTSEEEEEETTTT----EEEEEE
T ss_pred             EEEEEECCCCCccEEEecCCCCCceEEEEECCCCC----------------EEEEEecCCcEEEEeCCCC----ceeeee
Confidence            9999999999988888  55666666666655332                2234556778888887653    345666


Q ss_pred             -ecCCCC-EeEEEEeCCC-eEEEE---eCCCeEEEEECCCCcE---EEEecCCCcEEEEEEccCCCCEEE-EEeCCCeEE
Q 011126          385 -QGHSSE-VLDLSWSKNG-FLLSS---SADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVR  454 (493)
Q Consensus       385 -~~h~~~-V~~l~~sp~g-~l~sg---s~Dg~V~lWd~~~~~~---~~~~~h~~~V~~v~fsp~d~~~l~-sgs~Dg~V~  454 (493)
                       .+|.+. +.+++|+|++ +|++|   +.|+.|++||+++...   ...+.|...|.+++|+| ++++|+ +|+.||.|+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~g~~dg~i~  293 (402)
T 2aq5_A          215 DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDP-DTNIVYLCGKGDSSIR  293 (402)
T ss_dssp             ECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEET-TTTEEEEEETTCSCEE
T ss_pred             ccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcC-CCCEEEEEEcCCCeEE
Confidence             678776 8999999999 88888   7999999999998654   33445888999999999 888886 555799999


Q ss_pred             EEeCCCCe--EE--EecCCCCCeEEEEEccCCCEEEEe
Q 011126          455 IWEVRRCQ--VV--DYTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       455 IWdl~~~~--~~--~~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      +||+.+++  +.  ....+...|++++|+|++.+++++
T Consensus       294 i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~  331 (402)
T 2aq5_A          294 YFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK  331 (402)
T ss_dssp             EEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred             EEEecCCCcceEeecccccCCcccceEEecccccceec
Confidence            99999877  33  233366899999999999887643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.94  E-value=5.9e-25  Score=220.15  Aligned_cols=201  Identities=22%  Similarity=0.351  Sum_probs=170.0

Q ss_pred             ceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (493)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (493)
                      ..++.+|.+.|++++|+|++++|+||+.||+|+|||..+++....+..+...+.++.+.+.+.                .
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~----------------~  120 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC----------------A  120 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSS----------------E
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCC----------------E
Confidence            356889999999999999999999999999999999999988888887777777777766542                2


Q ss_pred             eeecCCCceEEEcCCCcee--ecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEE
Q 011126          357 SLRKSSDLTCVVLPPKVFR--LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT  432 (493)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~  432 (493)
                      .+.++.++.+.+|+.....  ........+.+|...|.+++|+|++ .|++++.|++|++||+.+++++..+. |...|.
T Consensus       121 lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~  200 (354)
T 2pbi_B          121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVL  200 (354)
T ss_dssp             EEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeE
Confidence            3455666777777553221  1123456778899999999999999 99999999999999999999998886 999999


Q ss_pred             EEEEccC-CCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          433 SVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       433 ~v~fsp~-d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      +++|+|. ++++|++|+.||+|++||+++++.+ .+..|...|++++|+|+|.+|++++.|.+
T Consensus       201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~  263 (354)
T 2pbi_B          201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT  263 (354)
T ss_dssp             EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe
Confidence            9999883 3689999999999999999999877 47789999999999999999999998763

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=4.7e-26  Score=233.72  Aligned_cols=253  Identities=15%  Similarity=0.222  Sum_probs=177.0

Q ss_pred             eecccccceeccCCCeEEeeecCCeEEEEECCCccc----cccccccceeeeccc------------CCEEEEEEccCC-
Q 011126          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR----ELSSLYTGQEFLAHE------------GSILTMKFSLDG-  296 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~----~~~~~~~~~~l~~H~------------~~I~~l~fspdg-  296 (493)
                      +.+.+.+++|+|+|.+||+|+.||.|+||++.....    ..........+.+|.            +.|++++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            356788899999999999999999999999886542    111222345688998            889999999998 


Q ss_pred             -CEEEEEECCCcEEEEecCCCeeeeeeeccCC--------------CCc------------e-EEEeeCCCCceeeeecc
Q 011126          297 -QYLASGGEDGTVRVWKVIEHERLDGFDVQDT--------------DPS------------C-LYFTINHLSQLIPIDVD  348 (493)
Q Consensus       297 -~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~--------------~~~------------~-~~~~~~~~~~~~~~~~~  348 (493)
                       .+|++++.|++|++||+.++...........              ...            . ..+...+...+..+.+.
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             7999999999999999976554211000000              000            0 01111223333333333


Q ss_pred             CccccceeeeecCCCceEEEcCCCceeecccc----eEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcE-
Q 011126          349 KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP----LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC-  421 (493)
Q Consensus       349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~-  421 (493)
                      ...   ...+.+ .++.+.+|+..........    ...+.+|...|++++|+|++  +|++|+.|++|++||++++.. 
T Consensus       187 ~~~---~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          187 SDY---ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             TTS---SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             CCC---CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            321   122334 5888888887632211000    01356899999999999986  999999999999999999886 


Q ss_pred             ---EEEec-CCC------------cEEEEEEccCCCCEEEEEeCCCeEEEEeCCC-CeEE-EecCCCCC-----------
Q 011126          422 ---LRVFS-HNN------------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVV-DYTDIREI-----------  472 (493)
Q Consensus       422 ---~~~~~-h~~------------~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~-~~~~-~~~~~~~~-----------  472 (493)
                         +..+. |..            .|++++|+| ++++|++++. +.|+|||+++ ++.+ .+..|...           
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~  340 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND  340 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred             cceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence               66665 554            899999999 9999999999 9999999997 6655 34444321           


Q ss_pred             ----eEEEEEccCCCEEEEeecCC
Q 011126          473 ----VSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       473 ----I~sv~~spdG~~l~s~s~d~  492 (493)
                          +..++|+|+|++|++++.|+
T Consensus       341 ~i~~~~~~~~s~~~~~l~s~s~dg  364 (447)
T 3dw8_B          341 CIFDKFECCWNGSDSVVMTGSYNN  364 (447)
T ss_dssp             GGGCCCCEEECTTSSEEEEECSTT
T ss_pred             ccccceEEEECCCCCEEEEeccCC
Confidence                33599999999999998875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.94  E-value=2.5e-25  Score=219.73  Aligned_cols=250  Identities=12%  Similarity=0.095  Sum_probs=189.5

Q ss_pred             eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC-EEEEEECCCcEEE
Q 011126          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRV  310 (493)
Q Consensus       232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V~i  310 (493)
                      ..|.+.+.+++|+|++.+|++++.|+.|+||++.......    ....+.+|...|++++|+|+++ +|++|+.||.|++
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE----EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc----cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            3577888899999999999999999999999987554211    1234568999999999999999 9999999999999


Q ss_pred             Eec-CCCeeeeeeec--cCCCCceEEEeeCCCCceeee---------eccC---------ccccc---------------
Q 011126          311 WKV-IEHERLDGFDV--QDTDPSCLYFTINHLSQLIPI---------DVDK---------EKIDK---------------  354 (493)
Q Consensus       311 Wdl-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~---------~~~~~---------------  354 (493)
                      ||+ .+++. ..+..  +...+.++.+.+  ...++..         +...         .....               
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC
Confidence            999 77754 55555  666677777765  2222222         1111         11000               


Q ss_pred             eeeeecCCCceEEEcCCCc-eeecccceEEEecCCCCEeEEEEeC-CC-eEEEEeCCCeEEEEECCCC------cEEEEe
Q 011126          355 TKSLRKSSDLTCVVLPPKV-FRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGID------RCLRVF  425 (493)
Q Consensus       355 ~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~------~~~~~~  425 (493)
                      ...+.++.++.+.+|+... ...  ........|...|.+++|+| ++ +|++++.|+.|+||++...      +.+..+
T Consensus       161 ~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  238 (342)
T 1yfq_A          161 SRLIVGMNNSQVQWFRLPLCEDD--NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTC--CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             CcEEEEeCCCeEEEEECCccccc--cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence            0022344455666665543 111  12334556888999999999 88 9999999999999999876      666666


Q ss_pred             c-CCC---------cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCC-CCCeEEEEEccCCCEEEEeecCCC
Q 011126          426 S-HNN---------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDI-REIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       426 ~-h~~---------~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~-~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      . |..         .|++++|+| ++++|++|+.||.|++||+.+++.+ .+..| ...|++++  |+|++|++++.|++
T Consensus       239 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          239 RCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             ECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             ecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            5 544         999999999 9999999999999999999999877 46777 89999999  99999999998863

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.94  E-value=4.5e-25  Score=224.70  Aligned_cols=228  Identities=16%  Similarity=0.144  Sum_probs=185.1

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~  315 (493)
                      +....++|+|++++|++|+.|+.|++|+........       .+..| ..+....|+|++++|++|+.||.|++||+.+
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  128 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK-------MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF  128 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT-------TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceee-------EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence            345569999999999999999999999987554321       23445 4455567899999999999999999999999


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      ++....+..+...+.++.|.++..                ..+.++.++.+.+|+....    +.+..+.+|...|.+++
T Consensus       129 ~~~~~~~~~h~~~v~~~~~~~~~~----------------~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~  188 (420)
T 3vl1_A          129 NLQREIDQAHVSEITKLKFFPSGE----------------ALISSSQDMQLKIWSVKDG----SNPRTLIGHRATVTDIA  188 (420)
T ss_dssp             CEEEEETTSSSSCEEEEEECTTSS----------------EEEEEETTSEEEEEETTTC----CCCEEEECCSSCEEEEE
T ss_pred             cceeeecccccCccEEEEECCCCC----------------EEEEEeCCCeEEEEeCCCC----cCceEEcCCCCcEEEEE
Confidence            988877777777777777765432                2345566778888877643    45677889999999999


Q ss_pred             EeCCC-eEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEE---------------------EccCCCCEEEEEeC
Q 011126          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVA---------------------FNPVDDNYFISGSI  449 (493)
Q Consensus       396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~----h~~~V~~v~---------------------fsp~d~~~l~sgs~  449 (493)
                      |+|++ +|++++.|++|++||+++++++..+.    |...|.+++                     |+| ++++|++|+.
T Consensus       189 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  267 (420)
T 3vl1_A          189 IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHV  267 (420)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEET
T ss_pred             EcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcC
Confidence            99999 99999999999999999999998885    445555555                     467 8899999999


Q ss_pred             CCeEEEEeCCCCeEEE--ecCCCCCeEEEEEccCCC-EEEEeecCC
Q 011126          450 DGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGK-VRQNSACNF  492 (493)
Q Consensus       450 Dg~V~IWdl~~~~~~~--~~~~~~~I~sv~~spdG~-~l~s~s~d~  492 (493)
                      ||.|++||+++++.+.  ...|...|++++|+|+|+ +|++++.|+
T Consensus       268 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  313 (420)
T 3vl1_A          268 SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG  313 (420)
T ss_dssp             TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCC
Confidence            9999999999887663  345788999999999999 999988765

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=223.11  Aligned_cols=236  Identities=14%  Similarity=0.176  Sum_probs=181.2

Q ss_pred             eeecccccceeccC---CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEE------ccCCCEEEEEE
Q 011126          233 RIIDRHGSATLKPG---DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF------SLDGQYLASGG  303 (493)
Q Consensus       233 ~~~~~~~~~~fsp~---g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f------spdg~~Lasgs  303 (493)
                      .|...+.+++|+|+   +.+|++|+.||.|++|++.....      ....+.+|...|.++.|      +|++++|++++
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~  136 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS  136 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc------cEEEEEecccceEEEeeccccccCCCccEEEEEe
Confidence            45567788999999   69999999999999999986542      23467899999999965      68999999999


Q ss_pred             CCCcEEEEecCCCe-eeeeeeccCC----CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126          304 EDGTVRVWKVIEHE-RLDGFDVQDT----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (493)
Q Consensus       304 ~Dg~V~iWdl~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (493)
                      .||.|++||+.+++ .+..+..+..    .+.++.+.+.         +.   ......+.++.++.+.+|+.....   
T Consensus       137 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~---~~~~~l~~~~~d~~i~i~d~~~~~---  201 (357)
T 3i2n_A          137 RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA---------YN---QEERVVCAGYDNGDIKLFDLRNMA---  201 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC---------CC----CCCEEEEEETTSEEEEEETTTTE---
T ss_pred             CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec---------cC---CCCCEEEEEccCCeEEEEECccCc---
Confidence            99999999999886 5555554333    2222222110         00   011233455667788888776543   


Q ss_pred             cceEEEecCCCCEeEEEEeC---CC-eEEEEeCCCeEEEEECCCCcEEEEe------cCCCcEEEEEEccCCCC-EEEEE
Q 011126          379 KPLHEFQGHSSEVLDLSWSK---NG-FLLSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDN-YFISG  447 (493)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp---~g-~l~sgs~Dg~V~lWd~~~~~~~~~~------~h~~~V~~v~fsp~d~~-~l~sg  447 (493)
                        ......|...|.+++|+|   ++ +|++++.|+.|++||+++++++..+      .|...|++++|+| ++. +|++|
T Consensus       202 --~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~  278 (357)
T 3i2n_A          202 --LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTA  278 (357)
T ss_dssp             --EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEE
T ss_pred             --eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEE
Confidence              234567899999999999   77 9999999999999999877655443      4999999999999 887 89999


Q ss_pred             eCCCeEEEEeCCCC--------------------eEEEecCCCCCeEEEEEccCCCEEE-EeecCC
Q 011126          448 SIDGKVRIWEVRRC--------------------QVVDYTDIREIVSAVCYCPDGKVRQ-NSACNF  492 (493)
Q Consensus       448 s~Dg~V~IWdl~~~--------------------~~~~~~~~~~~I~sv~~spdG~~l~-s~s~d~  492 (493)
                      +.||.|++||++.+                    .+..+..|...|++++|+|+|++|+ +++.|+
T Consensus       279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~  344 (357)
T 3i2n_A          279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ  344 (357)
T ss_dssp             ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence            99999999999753                    2335788999999999999999998 677664

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.94  E-value=7.3e-26  Score=228.15  Aligned_cols=234  Identities=13%  Similarity=0.100  Sum_probs=180.4

Q ss_pred             eeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126          233 RIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (493)
Q Consensus       233 ~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW  311 (493)
                      +|...+.+++|+| ++.+|++++.|+.|++|++....  ..   ......+|...|.+++|+|++++|++|+.|+.|++|
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  190 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV--IQ---VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL  190 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE--EE---EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc--eE---EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEE
Confidence            4566778899999 78999999999999999998422  11   111223456889999999999999999999999999


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      |+ +++.+..+..+...+.++.+.+....               ..+.++.++.+.+|+..........+..+ +|...|
T Consensus       191 d~-~~~~~~~~~~h~~~v~~~~~~~~~~~---------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v  253 (383)
T 3ei3_B          191 GL-DGHEIFKEKLHKAKVTHAEFNPRCDW---------------LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPV  253 (383)
T ss_dssp             ET-TSCEEEEEECSSSCEEEEEECSSCTT---------------EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCE
T ss_pred             EC-CCCEEEEeccCCCcEEEEEECCCCCC---------------EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCce
Confidence            99 57777778777777777777665432               23345667788888876644434445555 799999


Q ss_pred             eEEEEeC-CC-eEEEEeCCCeEEEEECCCCcEEEEec-C-------C----------CcEEEEEEccCCCCEEEEEeCCC
Q 011126          392 LDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS-H-------N----------NYVTSVAFNPVDDNYFISGSIDG  451 (493)
Q Consensus       392 ~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h-------~----------~~V~~v~fsp~d~~~l~sgs~Dg  451 (493)
                      .+++|+| ++ +|++++.|+.|+|||++++.++..+. |       .          ..+..++|+| ++++  +|+.||
T Consensus       254 ~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~  330 (383)
T 3ei3_B          254 NAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKR  330 (383)
T ss_dssp             EEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC-CTTT--CTTCCC
T ss_pred             EEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC-Cccc--ccCCCC
Confidence            9999999 88 99999999999999999887765553 2       2          3344566666 6665  777999


Q ss_pred             eEEEEeCCCCeEEE-ecC--CCCCeEEEEEccCCCEEEEeecCC
Q 011126          452 KVRIWEVRRCQVVD-YTD--IREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       452 ~V~IWdl~~~~~~~-~~~--~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      .|+|||+.+++.+. +..  +...+..++|+|+|++|++++ |+
T Consensus       331 ~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~  373 (383)
T 3ei3_B          331 TIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF  373 (383)
T ss_dssp             CEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred             eEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence            99999999998774 443  567788889999999999996 54

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.94  E-value=1.4e-25  Score=224.07  Aligned_cols=240  Identities=12%  Similarity=0.100  Sum_probs=185.8

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+..|...+.+++|+|++++|++++.||.|++|++......     ....+..|...|.+++|+|++++|++++.|+.|+
T Consensus        47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~  121 (372)
T 1k8k_C           47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK-----PTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS  121 (372)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE-----EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE
T ss_pred             eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee-----eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEE
Confidence            34566777888999999999999999999999998654311     1123467999999999999999999999999999


Q ss_pred             EEecCCCee---eeee-eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce-----------
Q 011126          310 VWKVIEHER---LDGF-DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF-----------  374 (493)
Q Consensus       310 iWdl~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-----------  374 (493)
                      +||+..+..   ...+ ..+...+.++.+.++.                ...+.++.++.+.+|+....           
T Consensus       122 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  185 (372)
T 1k8k_C          122 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS----------------VLLAAGSCDFKCRIFSAYIKEVEERPAPTPW  185 (372)
T ss_dssp             EEEEETTTTEEEEEEECTTCCSCEEEEEECTTS----------------SEEEEEETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred             EEEecCCCcceeeeeeecccCCCeeEEEEcCCC----------------CEEEEEcCCCCEEEEEccccccccccccccc
Confidence            999987763   2222 2223344444444322                12334456677777764311           


Q ss_pred             ---eecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeC
Q 011126          375 ---RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI  449 (493)
Q Consensus       375 ---~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~  449 (493)
                         ....+++..+.+|...|.+++|+|++ +|++++.|+.|++||+++++++..+. |...|++++|+| ++.+|++| .
T Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~  263 (372)
T 1k8k_C          186 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAG-H  263 (372)
T ss_dssp             BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEE-T
T ss_pred             ccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEec-CCCEEEEE-e
Confidence               11235577788999999999999999 99999999999999999999998886 888999999999 88888887 9


Q ss_pred             CCeEEEEeCCC--CeE---------------------------------------EEe-cCCCCCeEEEEEc-cCC---C
Q 011126          450 DGKVRIWEVRR--CQV---------------------------------------VDY-TDIREIVSAVCYC-PDG---K  483 (493)
Q Consensus       450 Dg~V~IWdl~~--~~~---------------------------------------~~~-~~~~~~I~sv~~s-pdG---~  483 (493)
                      |+.|++|++.+  ++.                                       ..+ .+|...|++++|. ++|   +
T Consensus       264 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~  343 (372)
T 1k8k_C          264 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS  343 (372)
T ss_dssp             TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS
T ss_pred             CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee
Confidence            99999999988  531                                       122 4889999999966 666   9


Q ss_pred             EEEEeecCC
Q 011126          484 VRQNSACNF  492 (493)
Q Consensus       484 ~l~s~s~d~  492 (493)
                      +|++++.|+
T Consensus       344 ~l~s~~~Dg  352 (372)
T 1k8k_C          344 QFCTTGMDG  352 (372)
T ss_dssp             EEEEEETTS
T ss_pred             eEEEecCCC
Confidence            999999886

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=1.7e-25  Score=225.19  Aligned_cols=203  Identities=13%  Similarity=0.144  Sum_probs=149.2

Q ss_pred             ccccceeccCCCeEEe--eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126          237 RHGSATLKPGDHELTL--GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (493)
Q Consensus       237 ~~~~~~fsp~g~~las--gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~  314 (493)
                      .+..++|+|||+++|+  ++.|++|+|||+......       ..+ .|.+.|++|+|+|||++|++++.+ .+++|+..
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~-------~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~  205 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK-------FEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTV  205 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE-------EEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETT
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE-------EEe-CCCCceEEEEEccCCceEEeccce-eEEEEEec
Confidence            3556899999999865  457899999998754422       233 478899999999999999999865 56677776


Q ss_pred             CCeeeeee--eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126          315 EHERLDGF--DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (493)
Q Consensus       315 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (493)
                      ++..+...  ..+...+..+.|.+++...+.. ..+           ......+..|+.............+.+|...|+
T Consensus       206 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~-s~d-----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~  273 (365)
T 4h5i_A          206 TGSCIARKTDFDKNWSLSKINFIADDTVLIAA-SLK-----------KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGIT  273 (365)
T ss_dssp             TCCEEEEECCCCTTEEEEEEEEEETTEEEEEE-EES-----------SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEE
T ss_pred             cCcceeeeecCCCCCCEEEEEEcCCCCEEEEE-ecC-----------CcceeEEeecccccceecceeeeeecCCCCCeE
Confidence            76655433  2233345556666654322211 111           111223444443332222233566789999999


Q ss_pred             EEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-c-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~  461 (493)
                      +++|+|+| +||+|+.|++|+|||+.+++++..+ . |...|++|+|+| ++++||+|+.|++|||||+...
T Consensus       274 ~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          274 SMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred             eEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999 9999999999999999999999886 3 999999999999 9999999999999999999743

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.94  E-value=1.1e-24  Score=221.69  Aligned_cols=229  Identities=22%  Similarity=0.315  Sum_probs=187.3

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeee-cccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW  311 (493)
                      ++.+.+....+++++..+++++.|+.|+||++......       ..+. .|...|++++|+|++++|++|+.||.|++|
T Consensus        89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~-------~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  161 (401)
T 4aez_A           89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVS-------ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY  161 (401)
T ss_dssp             TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEE-------EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEe-------EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence            45555555556666677899999999999999765422       1223 389999999999999999999999999999


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      |+.+++.+..+..+...+.++.+.  .                ...+.++.++.+.+|+....   ...+..+.+|...|
T Consensus       162 d~~~~~~~~~~~~~~~~v~~~~~~--~----------------~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v  220 (401)
T 4aez_A          162 DVESQTKLRTMAGHQARVGCLSWN--R----------------HVLSSGSRSGAIHHHDVRIA---NHQIGTLQGHSSEV  220 (401)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEEE--T----------------TEEEEEETTSEEEEEETTSS---SCEEEEEECCSSCE
T ss_pred             ECcCCeEEEEecCCCCceEEEEEC--C----------------CEEEEEcCCCCEEEEecccC---cceeeEEcCCCCCe
Confidence            999999888887766666555551  1                13345667788888877532   24567788999999


Q ss_pred             eEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEe--CCCeEEEEeCCCCeEEEec
Q 011126          392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVVDYT  467 (493)
Q Consensus       392 ~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs--~Dg~V~IWdl~~~~~~~~~  467 (493)
                      .+++|+|++ +|++++.|+.|++||++++.++..+. |...|.+++|+|....++++|+  .|+.|++||+.+++.+...
T Consensus       221 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~  300 (401)
T 4aez_A          221 CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV  300 (401)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE
T ss_pred             eEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE
Confidence            999999998 99999999999999999999988885 9999999999995456777765  7999999999999988766


Q ss_pred             CCCCCeEEEEEccCCCEEEEee
Q 011126          468 DIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       468 ~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .+...|++++|+|+|+++++++
T Consensus       301 ~~~~~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          301 DAGSQVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             ECSSCEEEEEECSSSSEEEEEE
T ss_pred             eCCCcEEEEEECCCCCeEEEEe
Confidence            7888999999999999999854

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.94  E-value=1.5e-24  Score=231.41  Aligned_cols=236  Identities=18%  Similarity=0.232  Sum_probs=191.7

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCC-EEEEEEcc--CCCEEEEEECCCcEE
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSL--DGQYLASGGEDGTVR  309 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fsp--dg~~Lasgs~Dg~V~  309 (493)
                      .+...+.+++|+|++++|++++ ++.|+||++......   ......+.+|... |++++|+|  ++++|++|+.||.|+
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~---~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~   91 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSK---VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI   91 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCS---SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCc---cccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence            3557788899999999999998 889999998854211   1234568899999 99999999  999999999999999


Q ss_pred             EEecCCC--------eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126          310 VWKVIEH--------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (493)
Q Consensus       310 iWdl~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (493)
                      |||+.++        .....+..+...+.++.|.+++... +....+           ....+.+.+|+.      .+.+
T Consensus        92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~-----------~~~~~~v~~~d~------~~~~  153 (615)
T 1pgu_A           92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL-CVVGEG-----------RDNFGVFISWDS------GNSL  153 (615)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEE-EEEECC-----------SSCSEEEEETTT------CCEE
T ss_pred             EEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEE-EEeccC-----------CCCccEEEEEEC------CCcc
Confidence            9999754        5566666666666666666544221 111100           011256777763      3457


Q ss_pred             EEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCC---cEEEEEEccCC-CCEEEEEeCCCeEE
Q 011126          382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNN---YVTSVAFNPVD-DNYFISGSIDGKVR  454 (493)
Q Consensus       382 ~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~---~V~~v~fsp~d-~~~l~sgs~Dg~V~  454 (493)
                      ..+.+|...|.+++|+|++  +|++++.|+.|++||+.+++++..+. |..   .|++++|+| + +++|++++.||.|+
T Consensus       154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~  232 (615)
T 1pgu_A          154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKIS  232 (615)
T ss_dssp             EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEE
T ss_pred             eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEE
Confidence            7788999999999999998  79999999999999999999999887 888   999999999 8 99999999999999


Q ss_pred             EEeCCCCeEEEec-----CCCCCeEEEEEccCCCEEEEeecCC
Q 011126          455 IWEVRRCQVVDYT-----DIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       455 IWdl~~~~~~~~~-----~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +||+.+++.+...     .|...|++++|+ ++++|++++.|+
T Consensus       233 vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~  274 (615)
T 1pgu_A          233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA  274 (615)
T ss_dssp             EEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred             EEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence            9999999888644     899999999999 999999998764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=2.5e-26  Score=233.47  Aligned_cols=236  Identities=12%  Similarity=0.070  Sum_probs=163.2

Q ss_pred             cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc--------CCCEEEEEECCCcEEEE
Q 011126          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--------DGQYLASGGEDGTVRVW  311 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--------dg~~Lasgs~Dg~V~iW  311 (493)
                      ...+++++.+||+|+.|++|+||+........  ......+.+|.+.|++|+|+|        |+++||||+.|++|+||
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~--~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIIT--QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEE--EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCccce--eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence            36678888999999999999999987654321  122234689999999999998        88999999999999999


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc-------------
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-------------  378 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-------------  378 (493)
                      |+.++..+..+..+...+.++.|.+....               ..+.++.++.+.+|+........             
T Consensus       172 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~---------------~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~  236 (393)
T 4gq1_A          172 RLTDEGPILAGYPLSSPGISVQFRPSNPN---------------QLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL  236 (393)
T ss_dssp             EEETTEEEEEEEECSSCEEEEEEETTEEE---------------EEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred             ECCCCceeeeecCCCCCcEEEEECCCCCc---------------eEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence            99988887777777777777777664422               23345566667777654322110             


Q ss_pred             --------cceEEEecCCCCEeEEEEe-CCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEE--------------
Q 011126          379 --------KPLHEFQGHSSEVLDLSWS-KNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS--------------  433 (493)
Q Consensus       379 --------~~~~~~~~h~~~V~~l~~s-p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~--------------  433 (493)
                              .......+|...|.++.|+ |++ .|++++.|+++++||+..++....+. |...+..              
T Consensus       237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  316 (393)
T 4gq1_A          237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP  316 (393)
T ss_dssp             EEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC
T ss_pred             EecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC
Confidence                    1122345788999999998 677 99999999999999998776655443 3333322              


Q ss_pred             ----EEEccC-CCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          434 ----VAFNPV-DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       434 ----v~fsp~-d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                          ..|+|. ++.++++|+.||+|+|||+.+++.+ ....|..+|++++|+|||++||+++.++
T Consensus       317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence                334432 3346678889999999999988655 4677888999999999999999998664

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.94  E-value=2.5e-25  Score=217.03  Aligned_cols=254  Identities=13%  Similarity=0.118  Sum_probs=182.4

Q ss_pred             ccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeecccccceecc--CCC
Q 011126          174 LQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKP--GDH  248 (493)
Q Consensus       174 lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~fsp--~g~  248 (493)
                      |+.+..   |+.|+....++++.     +|.+.....                  +.+..+.+|...+.+++|+|  ++.
T Consensus        12 V~~~~~s~~g~~las~s~D~~v~-----iw~~~~~~~------------------~~~~~l~gH~~~V~~v~~s~~~~g~   68 (297)
T 2pm7_B           12 IHDAVMDYYGKRMATCSSDKTIK-----IFEVEGETH------------------KLIDTLTGHEGPVWRVDWAHPKFGT   68 (297)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEE-----EEEBCSSCB------------------CCCEEECCCSSCEEEEEECCGGGCS
T ss_pred             eEEEEECCCCCEEEEEeCCCEEE-----EEecCCCCc------------------EEEEEEccccCCeEEEEecCCCcCC
Confidence            555443   77888888887777     777542110                  12234567888888999976  389


Q ss_pred             eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC--CCEEEEEECCCcEEEEecCCCee--eeeeec
Q 011126          249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGTVRVWKVIEHER--LDGFDV  324 (493)
Q Consensus       249 ~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~V~iWdl~~~~~--~~~~~~  324 (493)
                      +||+|+.|++|+||++.....     .....+.+|...|.+++|+|+  |.+|++|+.|++|++||+.++..  ...+..
T Consensus        69 ~l~s~s~D~~v~iWd~~~~~~-----~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  143 (297)
T 2pm7_B           69 ILASCSYDGKVMIWKEENGRW-----SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA  143 (297)
T ss_dssp             EEEEEETTTEEEEEEBSSSCB-----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC
T ss_pred             EEEEEcCCCEEEEEEcCCCce-----EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec
Confidence            999999999999999875431     123356789999999999997  89999999999999999987632  234455


Q ss_pred             cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC---C-
Q 011126          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN---G-  400 (493)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---g-  400 (493)
                      +...+.++.|.+......   ............+.++.++.+.+|+.............+.+|...|.+++|+|+   + 
T Consensus       144 h~~~v~~~~~~p~~~~~~---~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~  220 (297)
T 2pm7_B          144 HAIGVNSASWAPATIEED---GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS  220 (297)
T ss_dssp             CSSCEEEEEECCCC---------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred             ccCccceEeecCCccccc---ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCce
Confidence            555556666655431110   000000012345677788888888754322111245678899999999999998   4 


Q ss_pred             eEEEEeCCCeEEEEECCCCc---EEEEe---cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          401 FLLSSSADKTVRLWQVGIDR---CLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~~~~---~~~~~---~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      +|++++.|++|+|||+....   ....+   .|...|.+++|+| ++++|++++.||+|+||+..
T Consensus       221 ~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          221 YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEEEC
T ss_pred             EEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEEEC
Confidence            89999999999999998643   22233   3788999999999 99999999999999999986

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.9e-25  Score=233.71  Aligned_cols=242  Identities=10%  Similarity=0.056  Sum_probs=178.9

Q ss_pred             eeeecccccceeccC------CCeEEeeecCCeEEEEECCCccccc----cccccceeeecccCCEEEEEEccCCCEEEE
Q 011126          232 ARIIDRHGSATLKPG------DHELTLGQRMRRVRVHPVKKQSREL----SSLYTGQEFLAHEGSILTMKFSLDGQYLAS  301 (493)
Q Consensus       232 ~~~~~~~~~~~fsp~------g~~lasgs~dg~V~vwd~~~~~~~~----~~~~~~~~l~~H~~~I~~l~fspdg~~Las  301 (493)
                      .++...+..++|+|+      +.+||+++.||+|+||++.......    ........+.+|...|++++|++++ +|++
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~las  282 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVC  282 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEE
T ss_pred             EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEE
Confidence            445567788999997      5799999999999999997553210    1111234678999999999999864 8999


Q ss_pred             EECCCcEEEEecCCCee-eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126          302 GGEDGTVRVWKVIEHER-LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (493)
Q Consensus       302 gs~Dg~V~iWdl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (493)
                      |+.||+|++||+.++.. ...+..+...+.++.+......             ....++++.|+.+.+|+.+...    +
T Consensus       283 gs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g-------------~~~laS~S~D~tvklWD~~~~~----~  345 (524)
T 2j04_B          283 GFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE-------------DTVVSTVAVDGYFYIFNPKDIA----T  345 (524)
T ss_dssp             EETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS-------------CCEEEEEETTSEEEEECGGGHH----H
T ss_pred             EeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC-------------CeEEEEeccCCeEEEEECCCCC----c
Confidence            99999999999987643 3345555555555422211110             0234567889999999986533    2


Q ss_pred             eEEEecCCC--CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEE
Q 011126          381 LHEFQGHSS--EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (493)
Q Consensus       381 ~~~~~~h~~--~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IW  456 (493)
                      +..+.+|..  .|.+++|+|++ .|++++.|++|+|||++++.++..+. |.+.|++|+|+| ++++|++|+.||+|+||
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l~Sgs~Dgtv~lw  424 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMVLAGSADGSLIIT  424 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBCEEEETTTEEECC
T ss_pred             ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeEEEEECCCEEEEE
Confidence            344556653  58899999998 99999999999999999998877664 999999999999 99999999999999999


Q ss_pred             eCCCC---------------eE------------------------------EEecCCCCCeEEEEEccCCC---EEEEe
Q 011126          457 EVRRC---------------QV------------------------------VDYTDIREIVSAVCYCPDGK---VRQNS  488 (493)
Q Consensus       457 dl~~~---------------~~------------------------------~~~~~~~~~I~sv~~spdG~---~l~s~  488 (493)
                      |+..+               .+                              ..+.+|...|++|+|+|+++   .+++|
T Consensus       425 d~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg  504 (524)
T 2j04_B          425 NAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFS  504 (524)
T ss_dssp             BSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred             echHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence            86321               01                              01234667789999999964   88888


Q ss_pred             ecCC
Q 011126          489 ACNF  492 (493)
Q Consensus       489 s~d~  492 (493)
                      +.++
T Consensus       505 ~~~g  508 (524)
T 2j04_B          505 NSAG  508 (524)
T ss_dssp             CTTS
T ss_pred             ccCc
Confidence            7654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.93  E-value=5.1e-25  Score=218.44  Aligned_cols=242  Identities=13%  Similarity=0.167  Sum_probs=187.2

Q ss_pred             eeeecccccceeccCCCeE-Eeeec---CCeEEEEECCCccccccccccceeeecccCCEEEEEEccC---CCEEEEEEC
Q 011126          232 ARIIDRHGSATLKPGDHEL-TLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGGE  304 (493)
Q Consensus       232 ~~~~~~~~~~~fsp~g~~l-asgs~---dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~  304 (493)
                      .+|...+.+++|+|++..+ ++|+.   |+.|+||++........      ...+|...|++++|+|+   +.+|++|+.
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~l~~~~~   88 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------REIEKAKPIKCGTFGATSLQQRYLATGDF   88 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------EEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------eeecccCcEEEEEEcCCCCCCceEEEecC
Confidence            4577888899999999655 56665   99999999886542211      22479999999999998   799999999


Q ss_pred             CCcEEEEecCCCe-eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126          305 DGTVRVWKVIEHE-RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (493)
Q Consensus       305 Dg~V~iWdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (493)
                      ||.|++||+.+++ .+..+..+...+.++.+.+.-       .+.   ......+.++.++.+.+|+.....   .++..
T Consensus        89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~s---~~~~~l~~~~~d~~i~vwd~~~~~---~~~~~  155 (357)
T 3i2n_A           89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGL-------GIG---EGAPEIVTGSRDGTVKVWDPRQKD---DPVAN  155 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGG-------GCC----CCCEEEEEETTSCEEEECTTSCS---SCSEE
T ss_pred             CCeEEEEeCCCCCccEEEEEecccceEEEeecccc-------ccC---CCccEEEEEeCCCeEEEEeCCCCC---Cccee
Confidence            9999999999887 777777776666666553210       000   011233456677888888876532   24566


Q ss_pred             EecCCC----CEeEEE----EeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccC--CCCEEEEEeCCCe
Q 011126          384 FQGHSS----EVLDLS----WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV--DDNYFISGSIDGK  452 (493)
Q Consensus       384 ~~~h~~----~V~~l~----~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~--d~~~l~sgs~Dg~  452 (493)
                      +..|.+    .|.+++    |+|++ +|++++.|+.|++||+++++......|...|++++|+|.  ++++|++|+.||.
T Consensus       156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  235 (357)
T 3i2n_A          156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK  235 (357)
T ss_dssp             ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred             ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence            655554    899998    67788 999999999999999999999888889999999999995  6899999999999


Q ss_pred             EEEEeCCCCeEE------EecCCCCCeEEEEEccCCC-EEEEeecCC
Q 011126          453 VRIWEVRRCQVV------DYTDIREIVSAVCYCPDGK-VRQNSACNF  492 (493)
Q Consensus       453 V~IWdl~~~~~~------~~~~~~~~I~sv~~spdG~-~l~s~s~d~  492 (493)
                      |++||+++++.+      ....|...|++++|+|+|+ +|++++.|+
T Consensus       236 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  282 (357)
T 3i2n_A          236 FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG  282 (357)
T ss_dssp             EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC
Confidence            999999876533      2348999999999999999 788888764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.93  E-value=1.8e-24  Score=219.79  Aligned_cols=230  Identities=17%  Similarity=0.238  Sum_probs=182.7

Q ss_pred             cceeccCCCeEE-eeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEECCCcEEEEecCCC-
Q 011126          240 SATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEH-  316 (493)
Q Consensus       240 ~~~fsp~g~~la-sgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~V~iWdl~~~-  316 (493)
                      .++++|+...++ +++.+|.|+||++.+.....   .....+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++ 
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            477888876544 57899999999986543321   12335788999999999999 9999999999999999999887 


Q ss_pred             ------eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE--ecCC
Q 011126          317 ------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF--QGHS  388 (493)
Q Consensus       317 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~--~~h~  388 (493)
                            +.+..+..+...+.++.|.+....               ..+.++.++.+.+|+....    +.+..+  .+|.
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~---------------~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~  176 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQN---------------VLLSAGCDNVILVWDVGTG----AAVLTLGPDVHP  176 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTT---------------EEEEEETTSCEEEEETTTT----EEEEEECTTTCC
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCC---------------EEEEEcCCCEEEEEECCCC----CccEEEecCCCC
Confidence                  445666666666666666554422               2334556777888877643    346677  7899


Q ss_pred             CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe--cCCCc-EEEEEEccCCCCEEEEE---eCCCeEEEEeCCCC
Q 011126          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNY-VTSVAFNPVDDNYFISG---SIDGKVRIWEVRRC  461 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~--~h~~~-V~~v~fsp~d~~~l~sg---s~Dg~V~IWdl~~~  461 (493)
                      ..|.+++|+|++ +|++++.|++|++||+++++.+..+  .|... +.++.|+| ++.+|++|   +.|+.|++||++++
T Consensus       177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHL  255 (402)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBC
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccc
Confidence            999999999999 9999999999999999999999887  37665 89999999 99999999   79999999999986


Q ss_pred             eE---EEecCCCCCeEEEEEccCCCEEEEee-cCC
Q 011126          462 QV---VDYTDIREIVSAVCYCPDGKVRQNSA-CNF  492 (493)
Q Consensus       462 ~~---~~~~~~~~~I~sv~~spdG~~l~s~s-~d~  492 (493)
                      +.   .....+...|.+++|+|+|++|++++ .|.
T Consensus       256 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg  290 (402)
T 2aq5_A          256 EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS  290 (402)
T ss_dssp             SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS
T ss_pred             cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC
Confidence            53   23456778899999999999997655 353

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=1.6e-24  Score=217.07  Aligned_cols=250  Identities=9%  Similarity=0.067  Sum_probs=178.1

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE-EEEECCCcEE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVR  309 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~V~  309 (493)
                      ...|.+.+.+++|+|+|++||+|+.++ ++||+.......         +..+...+..+.+.++++++ ++++.|++|+
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~   84 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI---------MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVH   84 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE---------EEEECSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee---------eeeecCCeEEEEEcCCCCEEEEEECCccEEE
Confidence            456778899999999999999998775 789997643321         11223358888999988877 5677889999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCC-----CCceeeeeccCc-ccc--------------ceeeee-cCCCceEEE
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINH-----LSQLIPIDVDKE-KID--------------KTKSLR-KSSDLTCVV  368 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~--------------~~~~~~-~s~~~~~~~  368 (493)
                      |||+.+++.+..+.... .+..+.+....     ...+..++.... ...              ....+. +..++.+.+
T Consensus        85 iWd~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           85 IWDDVKKQDVSRIKVDA-PVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             EEETTTTEEEEEEECSS-CEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred             EEECCCCcEEEEEECCC-ceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence            99999999888876433 34444332211     112222232222 100              111222 677888888


Q ss_pred             cCCCceee-----------cccc-eEEEecCCCCEeEEEEeCCC-eEEEEeCCCe-EEEEECCCCcEEEEec---CCCcE
Q 011126          369 LPPKVFRL-----------LEKP-LHEFQGHSSEVLDLSWSKNG-FLLSSSADKT-VRLWQVGIDRCLRVFS---HNNYV  431 (493)
Q Consensus       369 ~~~~~~~~-----------~~~~-~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~-V~lWd~~~~~~~~~~~---h~~~V  431 (493)
                      |+......           ...| +..+.+|...|++++|+|+| +|++|+.|++ |+|||+++++++..+.   |...|
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v  243 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADV  243 (355)
T ss_dssp             EECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCE
T ss_pred             EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcE
Confidence            88764320           0123 67889999999999999999 9999999998 9999999999999996   99999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE---e---------------------cCCCCCeEEEEEccCCCEEEE
Q 011126          432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---Y---------------------TDIREIVSAVCYCPDGKVRQN  487 (493)
Q Consensus       432 ~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~---~---------------------~~~~~~I~sv~~spdG~~l~s  487 (493)
                      ++++|+| ++++|++++.|++|+|||+.......   +                     .........++|+|||+.+++
T Consensus       244 ~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~  322 (355)
T 3vu4_A          244 VDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVV  322 (355)
T ss_dssp             EEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEE
T ss_pred             EEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEE
Confidence            9999999 99999999999999999997653110   0                     011223467999999999999


Q ss_pred             eecCC
Q 011126          488 SACNF  492 (493)
Q Consensus       488 ~s~d~  492 (493)
                      ++.|+
T Consensus       323 ~~~dg  327 (355)
T 3vu4_A          323 WPHTR  327 (355)
T ss_dssp             ETTTT
T ss_pred             EeCCC
Confidence            88764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.93  E-value=8e-26  Score=227.00  Aligned_cols=207  Identities=12%  Similarity=0.084  Sum_probs=151.1

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+..|...+.+++|+|++++|++++.|+.|+||++....    .......+.+|...|++++|+|++++|++|+.|+.|+
T Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  125 (377)
T 3dwl_C           50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVIS  125 (377)
T ss_dssp             CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEE
T ss_pred             EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEE
Confidence            455677788889999999999999999999999998654    1122335678999999999999999999999999999


Q ss_pred             EEecCCCee---eeeeec-cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee---------
Q 011126          310 VWKVIEHER---LDGFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL---------  376 (493)
Q Consensus       310 iWdl~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~---------  376 (493)
                      +||+.+++.   ...+.. +...+.++.+.++..                ..+.++.++.+.+|+......         
T Consensus       126 iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  189 (377)
T 3dwl_C          126 VCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV----------------LLAAGCADRKAYVLSAYVRDVDAKPEASVW  189 (377)
T ss_dssp             ECCC-----CCCCEEECSSCCSCEEEEEECTTSS----------------EEEEEESSSCEEEEEECCSSCC-CCCSCSS
T ss_pred             EEEECCcccceeeeEeecccCCCeEEEEEcCCCC----------------EEEEEeCCCEEEEEEEEecccCCCcccccc
Confidence            999988763   455554 555555665554331                223445566677776532111         


Q ss_pred             -----cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE----EEEec-CCCcEEEEEEccCCCCEEE
Q 011126          377 -----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC----LRVFS-HNNYVTSVAFNPVDDNYFI  445 (493)
Q Consensus       377 -----~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~----~~~~~-h~~~V~~v~fsp~d~~~l~  445 (493)
                           ..+++..+ +|...|.+++|+|++ +|++++.|++|+|||+.++.+    +..+. |...|++++|+| ++++|+
T Consensus       190 ~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~  267 (377)
T 3dwl_C          190 GSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN-ESAIVA  267 (377)
T ss_dssp             CSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEE-TTEEEE
T ss_pred             ccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcC-CCCEEE
Confidence                 12334455 899999999999999 999999999999999999887    55554 889999999999 999999


Q ss_pred             EEeCCCeEEEEeCC
Q 011126          446 SGSIDGKVRIWEVR  459 (493)
Q Consensus       446 sgs~Dg~V~IWdl~  459 (493)
                      +|+.|+.+ +|+..
T Consensus       268 ~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          268 AGYNYSPI-LLQGN  280 (377)
T ss_dssp             EESSSSEE-EECCC
T ss_pred             EEcCCcEE-EEEeC
Confidence            99877666 66664

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=6.9e-25  Score=245.62  Aligned_cols=236  Identities=14%  Similarity=0.104  Sum_probs=179.8

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (493)
                      .....+|...+.+++|+|++.+||+|+.||+|+||+.......        ....|...|++|+|+| |++|++++.|++
T Consensus        10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~--------~~~~~~~~V~~l~fsp-g~~L~S~s~D~~   80 (902)
T 2oaj_A           10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV--------IKLEDRSAIKEMRFVK-GIYLVVINAKDT   80 (902)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE--------EECSSCCCEEEEEEET-TTEEEEEETTCE
T ss_pred             cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE--------EEcCCCCCEEEEEEcC-CCEEEEEECcCe
Confidence            3344567788899999999999999999999999997643211        1234788999999999 889999999999


Q ss_pred             EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce------
Q 011126          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL------  381 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~------  381 (493)
                      |+|||+.+++.+..+. +...+.++.+.++.                ...+.++.++.+.+|+.....+....+      
T Consensus        81 v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g----------------~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~  143 (902)
T 2oaj_A           81 VYVLSLYSQKVLTTVF-VPGKITSIDTDASL----------------DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS  143 (902)
T ss_dssp             EEEEETTTCSEEEEEE-CSSCEEEEECCTTC----------------SEEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred             EEEEECCCCcEEEEEc-CCCCEEEEEECCCC----------------CEEEEEcCCCcEEEEECCCCccccceecccccc
Confidence            9999999998877775 22334444443322                223456677788888776544311001      


Q ss_pred             -EEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-C------------------CCcEEEEEEccC
Q 011126          382 -HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-H------------------NNYVTSVAFNPV  439 (493)
Q Consensus       382 -~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h------------------~~~V~~v~fsp~  439 (493)
                       ..+.+|.+.|++|+|+|++  +|++|+.|++| |||+++++++..+. |                  ...|++++|+| 
T Consensus       144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-  221 (902)
T 2oaj_A          144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-  221 (902)
T ss_dssp             HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-
T ss_pred             ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-
Confidence             2346799999999999974  89999999999 99999999988875 3                  47799999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEe--c-----------------CCCCCeEEEEEc----cCC-CEEEEeecC
Q 011126          440 DDNYFISGSIDGKVRIWEVRRCQVVDY--T-----------------DIREIVSAVCYC----PDG-KVRQNSACN  491 (493)
Q Consensus       440 d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~-----------------~~~~~I~sv~~s----pdG-~~l~s~s~d  491 (493)
                      ++.+|++|+.||+|+|||+++++.+..  .                 .+...|++++|+    |++ ..|++|+.+
T Consensus       222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            999999999999999999999887642  1                 134579999995    554 456666543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.93  E-value=1.8e-24  Score=239.05  Aligned_cols=234  Identities=19%  Similarity=0.281  Sum_probs=191.1

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+..|...+.+++|+|++++|++|+.||.|+||++....       ....+.+|.+.|++++|+|++++|++++.||+|+
T Consensus        50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  122 (814)
T 3mkq_A           50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK  122 (814)
T ss_dssp             EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEE
Confidence            344566778889999999999999999999999987543       2345788999999999999999999999999999


Q ss_pred             EEecCCC-eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-C
Q 011126          310 VWKVIEH-ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-H  387 (493)
Q Consensus       310 iWdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h  387 (493)
                      +||+.++ .....+..+...+.++.|.+...               ...+.++.++.+.+|+....    .+...+.. |
T Consensus       123 vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---------------~~l~~~~~dg~v~vwd~~~~----~~~~~~~~~~  183 (814)
T 3mkq_A          123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDP---------------STFASGCLDRTVKVWSLGQS----TPNFTLTTGQ  183 (814)
T ss_dssp             EEEGGGTSEEEEEEECCSSCEEEEEEETTEE---------------EEEEEEETTSEEEEEETTCS----SCSEEEECCC
T ss_pred             EEECCCCceEEEEEcCCCCcEEEEEEEcCCC---------------CEEEEEeCCCeEEEEECCCC----cceeEEecCC
Confidence            9999887 56666666666666666655211               22345566777888876432    23444444 4


Q ss_pred             CCCEeEEEEeC--CC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          388 SSEVLDLSWSK--NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       388 ~~~V~~l~~sp--~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      ...|.+++|+|  ++ +|++++.|++|++||+.+++++..+. |...|++++|+| ++++|++++.||.|++||+.+++.
T Consensus       184 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~  262 (814)
T 3mkq_A          184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKV  262 (814)
T ss_dssp             TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCSE
T ss_pred             CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence            48999999999  77 99999999999999999999988887 899999999999 999999999999999999999887


Q ss_pred             E-EecCCCCCeEEEEEccCCC--EEEEeec
Q 011126          464 V-DYTDIREIVSAVCYCPDGK--VRQNSAC  490 (493)
Q Consensus       464 ~-~~~~~~~~I~sv~~spdG~--~l~s~s~  490 (493)
                      + .+..+...+++++|+|+|+  +++++..
T Consensus       263 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  292 (814)
T 3mkq_A          263 EKTLNVGLERSWCIATHPTGRKNYIASGFD  292 (814)
T ss_dssp             EEEECCSSSSEEEEEECTTCGGGEEEEEET
T ss_pred             EEEeecCCCcEEEEEEccCCCceEEEEEeC
Confidence            7 4677888999999999997  4555543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.93  E-value=2.5e-25  Score=218.60  Aligned_cols=219  Identities=19%  Similarity=0.268  Sum_probs=163.0

Q ss_pred             ceeeeecccccceecc--CCCeEEeeecCCeEEEEECCCccccc--cccccceeeecccCCEEEEEEccC--CCEEEEEE
Q 011126          230 AMARIIDRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSREL--SSLYTGQEFLAHEGSILTMKFSLD--GQYLASGG  303 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp--~g~~lasgs~dg~V~vwd~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs  303 (493)
                      .+.+|...+.+++|+|  ++.+|++|+.||.|+||++.......  ........+.+|...|.+++|+|+  +.+|++++
T Consensus        52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  131 (351)
T 3f3f_A           52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG  131 (351)
T ss_dssp             EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence            3456777888899999  69999999999999999998654321  111234567889999999999999  99999999


Q ss_pred             CCCcEEEEecCCCeeeeeeec-------------cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcC
Q 011126          304 EDGTVRVWKVIEHERLDGFDV-------------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP  370 (493)
Q Consensus       304 ~Dg~V~iWdl~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  370 (493)
                      .||.|++||+.+++.+..+..             +...+.++.+.+.             .......+.++.++.++++.
T Consensus       132 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~~~~~~~  198 (351)
T 3f3f_A          132 NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS-------------RFSPEKLAVSALEQAIIYQR  198 (351)
T ss_dssp             TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCC-------------SSSCCEEEEEETTEEEEEEE
T ss_pred             CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccC-------------CCCCcEEEEecCCCcEEEEc
Confidence            999999999988876554432             2223333444332             11122333444445554443


Q ss_pred             CCceeecccceEEEecCCCCEeEEEEeCCC-----eEEEEeCCCeEEEEECCCC--------------------------
Q 011126          371 PKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGID--------------------------  419 (493)
Q Consensus       371 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-----~l~sgs~Dg~V~lWd~~~~--------------------------  419 (493)
                      ......  ..+..+.+|...|++++|+|++     +|++++.|++|++||++.+                          
T Consensus       199 ~~~~~~--~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
T 3f3f_A          199 GKDGKL--HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDA  276 (351)
T ss_dssp             CTTSCE--EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------
T ss_pred             cCCCce--eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccc
Confidence            332111  2356778899999999999995     7999999999999999864                          


Q ss_pred             --------------------cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          420 --------------------RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       420 --------------------~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                                          +++..+. |...|++++|+| ++++|++|+.||.|+|||+.+++.+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          277 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             --------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             ccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecCCCcEEEEecCcCcch
Confidence                                4455554 899999999999 9999999999999999999987543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.9e-24  Score=239.56  Aligned_cols=325  Identities=10%  Similarity=0.016  Sum_probs=207.9

Q ss_pred             CcceeeeecCCCceeEEccCCCchhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhh
Q 011126          144 HAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKV  220 (493)
Q Consensus       144 ~~~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~  220 (493)
                      +...+|||+++|+....-.     |...  +..+.+   ++.|+...-++.+.     +|.+.......        ...
T Consensus        78 D~~v~lWd~~~~~~~~~~~-----~~~~--V~~v~~sp~g~~l~sgs~dg~V~-----lwd~~~~~~~~--------~~i  137 (902)
T 2oaj_A           78 KDTVYVLSLYSQKVLTTVF-----VPGK--ITSIDTDASLDWMLIGLQNGSMI-----VYDIDRDQLSS--------FKL  137 (902)
T ss_dssp             TCEEEEEETTTCSEEEEEE-----CSSC--EEEEECCTTCSEEEEEETTSCEE-----EEETTTTEEEE--------EEE
T ss_pred             cCeEEEEECCCCcEEEEEc-----CCCC--EEEEEECCCCCEEEEEcCCCcEE-----EEECCCCcccc--------cee
Confidence            3457899999987654221     1111  444443   77888887777776     88765432110        000


Q ss_pred             ccccccccCceeeeecccccceeccC-CCeEEeeecCCeEEEEECCCccccccccccc------------eeeecccCCE
Q 011126          221 KRGWLKKLGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTG------------QEFLAHEGSI  287 (493)
Q Consensus       221 k~~w~~~~~~~~~~~~~~~~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~------------~~l~~H~~~I  287 (493)
                      ...| .......+|...+.+++|+|+ +.+|++|+.||.| |||+....... .+...            ....+|...|
T Consensus       138 ~~~~-~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~h~~~V  214 (902)
T 2oaj_A          138 DNLQ-KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQ-SFIYELPPFAPGGDFSEKTNEKRTPKV  214 (902)
T ss_dssp             CCHH-HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEE-EECCCBCTTCCCSTTCCCTTSCBCCCE
T ss_pred             cccc-ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEE-EEecccCCcCCCcccccccccccCCCe
Confidence            0011 100233567788899999996 4789999999999 99998654211 11000            0113457889


Q ss_pred             EEEEEccCCCEEEEEECCCcEEEEecCCCeeeee--ee---cc-------------CCCCceEEEeeCCC----C-----
Q 011126          288 LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG--FD---VQ-------------DTDPSCLYFTINHL----S-----  340 (493)
Q Consensus       288 ~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~--~~---~~-------------~~~~~~~~~~~~~~----~-----  340 (493)
                      ++++|+|+|++|++|+.||+|++||+.+++.+..  +.   .+             ...+..+.|.+...    .     
T Consensus       215 ~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg  294 (902)
T 2oaj_A          215 IQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISH  294 (902)
T ss_dssp             EEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeC
Confidence            9999999999999999999999999988876542  21   11             11233334432110    0     


Q ss_pred             ---------ceeeee-----------------------------------------------------------------
Q 011126          341 ---------QLIPID-----------------------------------------------------------------  346 (493)
Q Consensus       341 ---------~~~~~~-----------------------------------------------------------------  346 (493)
                               .+..+.                                                                 
T Consensus       295 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg  374 (902)
T 2oaj_A          295 KSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNG  374 (902)
T ss_dssp             ECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTS
T ss_pred             CCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCC
Confidence                     000000                                                                 


Q ss_pred             ------ccCcc-----------------------------------------------------------ccceeeeecC
Q 011126          347 ------VDKEK-----------------------------------------------------------IDKTKSLRKS  361 (493)
Q Consensus       347 ------~~~~~-----------------------------------------------------------~~~~~~~~~s  361 (493)
                            ...+.                                                           ......+.++
T Consensus       375 ~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs  454 (902)
T 2oaj_A          375 EIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGH  454 (902)
T ss_dssp             CEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEE
T ss_pred             cEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEec
Confidence                  00000                                                           0000112233


Q ss_pred             CCceEEEcCCCceeecccceEEE--e-----cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC--------------
Q 011126          362 SDLTCVVLPPKVFRLLEKPLHEF--Q-----GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--------------  419 (493)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~--~-----~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~--------------  419 (493)
                      .|+.+.+|+.....+........  .     +|...|++|+|+|++ +||+|+.|++|+|||+.++              
T Consensus       455 ~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~  534 (902)
T 2oaj_A          455 SNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDL  534 (902)
T ss_dssp             TTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC------------
T ss_pred             CCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCccc
Confidence            33344444433221111011111  1     788999999999999 9999999999999999765              


Q ss_pred             -------------------------------cEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE--
Q 011126          420 -------------------------------RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--  465 (493)
Q Consensus       420 -------------------------------~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~--  465 (493)
                                                     +++.++. |.+.|++|+|+| +| +||+|+.|++|+|||+++..++.  
T Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~  612 (902)
T 2oaj_A          535 EMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYME  612 (902)
T ss_dssp             ---CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEe
Confidence                                           2355665 999999999999 99 99999999999999999887762  


Q ss_pred             ----ec-CCCCCeEEEEEc-----cCC---CEEEEeecCCC
Q 011126          466 ----YT-DIREIVSAVCYC-----PDG---KVRQNSACNFC  493 (493)
Q Consensus       466 ----~~-~~~~~I~sv~~s-----pdG---~~l~s~s~d~~  493 (493)
                          +. +|...|++|+|+     |||   ++|++++.|.+
T Consensus       613 ~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t  653 (902)
T 2oaj_A          613 NIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE  653 (902)
T ss_dssp             EGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE
T ss_pred             ehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc
Confidence                22 788899999999     886   89999998763

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.93  E-value=1.1e-23  Score=217.08  Aligned_cols=281  Identities=19%  Similarity=0.258  Sum_probs=214.9

Q ss_pred             CcceeeeecCCCceeEEccCCCchhhhhccccccCC-CcccccccccCCCCCCccccccCCccccccccchhhhhhhhcc
Q 011126          144 HAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS-SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKR  222 (493)
Q Consensus       144 ~~~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~-~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~  222 (493)
                      +...+++|+.+|+....-.    +|...  +..+.. ++.+.....++++.     +|.+...+                
T Consensus       138 dg~i~vwd~~~~~~~~~~~----~h~~~--v~~~~~~~~~l~s~~~dg~i~-----vwd~~~~~----------------  190 (445)
T 2ovr_B          138 DNTLKVWSAVTGKCLRTLV----GHTGG--VWSSQMRDNIIISGSTDRTLK-----VWNAETGE----------------  190 (445)
T ss_dssp             TSCEEEEETTTCCEEEECC----CCSSC--EEEEEEETTEEEEEETTSCEE-----EEETTTTE----------------
T ss_pred             CCcEEEEECCCCcEEEEEc----CCCCC--EEEEEecCCEEEEEeCCCeEE-----EEECCcCc----------------
Confidence            3457889998887554322    33333  444444 56677777776666     77653321                


Q ss_pred             ccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE
Q 011126          223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG  302 (493)
Q Consensus       223 ~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg  302 (493)
                          ....+..|...+.++.++  +.++++|+.||.|++|++....       ....+.+|...|.++.|  ++++|++|
T Consensus       191 ----~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-------~~~~~~~~~~~v~~~~~--~~~~l~~~  255 (445)
T 2ovr_B          191 ----CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-------CLHVLMGHVAAVRCVQY--DGRRVVSG  255 (445)
T ss_dssp             ----EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-------EEEEEECCSSCEEEEEE--CSSCEEEE
T ss_pred             ----EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-------EEEEEcCCcccEEEEEE--CCCEEEEE
Confidence                111233455666666664  6789999999999999987543       23457889999999999  78899999


Q ss_pred             ECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126          303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (493)
Q Consensus       303 s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (493)
                      +.||.|++||+.+++.+..+..+...+.++.+  +                ....+.++.++.+.+|+....    +++.
T Consensus       256 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~----------------~~~l~~~~~d~~i~i~d~~~~----~~~~  313 (445)
T 2ovr_B          256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--D----------------GIHVVSGSLDTSIRVWDVETG----NCIH  313 (445)
T ss_dssp             ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--C----------------SSEEEEEETTSCEEEEETTTC----CEEE
T ss_pred             cCCCEEEEEECCCCcEeEEecCCCCceEEEEE--C----------------CCEEEEEeCCCeEEEEECCCC----CEEE
Confidence            99999999999999988888766555555444  1                122345666778888877653    4567


Q ss_pred             EEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126          383 EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       383 ~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl  458 (493)
                      .+.+|...+.++.++++ +|++++.|+.|++||+++++++..+.    |...|++++|+   +++|++|+.||.|+|||+
T Consensus       314 ~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~  389 (445)
T 2ovr_B          314 TLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDL  389 (445)
T ss_dssp             EECCCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEET
T ss_pred             EEcCCcccEEEEEEeCC-EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEEC
Confidence            88899999999988643 99999999999999999999998886    88899999996   479999999999999999


Q ss_pred             CCCeEEE-e-----cCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          459 RRCQVVD-Y-----TDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       459 ~~~~~~~-~-----~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      .+++.+. +     ..+...|++++|+|+|.++++++.|+
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg  429 (445)
T 2ovr_B          390 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  429 (445)
T ss_dssp             TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             CCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCC
Confidence            9998774 3     36788999999999999999998876

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.93  E-value=9.8e-25  Score=216.90  Aligned_cols=237  Identities=17%  Similarity=0.196  Sum_probs=186.4

Q ss_pred             eeeecccccceeccC----CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC----CCEEEEEE
Q 011126          232 ARIIDRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----GQYLASGG  303 (493)
Q Consensus       232 ~~~~~~~~~~~fsp~----g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~~Lasgs  303 (493)
                      .+|...+.+++|+|+    ...+++++.++.|+||++...... ..+ .......|...|++++|+|+    +++|++|+
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI-RLL-QSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE-EEE-EEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE-Eee-eeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            357788889999984    566777778889999998854321 111 01111237788999999998    67999999


Q ss_pred             CCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126          304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (493)
Q Consensus       304 ~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (493)
                      .||.|++||+.+++.+..+..+...+.++.|.+....               ..+.++.++.+.+|+....    +.+..
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------------~l~s~~~dg~i~iwd~~~~----~~~~~  153 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN---------------LLLSVSKDHALRLWNIQTD----TLVAI  153 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT---------------EEEEEETTSCEEEEETTTT----EEEEE
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC---------------EEEEEeCCCeEEEEEeecC----eEEEE
Confidence            9999999999999998888888777777777663222               2234556777888877543    33555


Q ss_pred             E---ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-----------------------------CCCc
Q 011126          384 F---QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----------------------------HNNY  430 (493)
Q Consensus       384 ~---~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-----------------------------h~~~  430 (493)
                      +   .+|...|.+++|+|++ +|++++.|+.|++||+++++.+..+.                             |...
T Consensus       154 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (366)
T 3k26_A          154 FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY  233 (366)
T ss_dssp             ECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred             ecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence            5   6899999999999999 99999999999999999876554332                             8899


Q ss_pred             EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE--------------E-EecCCCCCeEEEEEccC--CCEEEEeecCC
Q 011126          431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--------------V-DYTDIREIVSAVCYCPD--GKVRQNSACNF  492 (493)
Q Consensus       431 V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~--------------~-~~~~~~~~I~sv~~spd--G~~l~s~s~d~  492 (493)
                      |++++|+   +++|++++.||.|++||+.+++.              + .+..|...|++++|+|+  |++|++++.|+
T Consensus       234 v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg  309 (366)
T 3k26_A          234 VDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG  309 (366)
T ss_dssp             CCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS
T ss_pred             EEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC
Confidence            9999998   57999999999999999987532              3 56778889999999999  99999998775

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=6.4e-24  Score=219.33  Aligned_cols=235  Identities=12%  Similarity=0.084  Sum_probs=175.2

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCCccc--cccccc--------------------------------------
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR--ELSSLY--------------------------------------  275 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~--~~~~~~--------------------------------------  275 (493)
                      ..+.+++|+|+|++|+++ .++.|++|++.....  .+..+.                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            456678999999966665 678999999865540  000000                                      


Q ss_pred             ----------cceeeecccCCEEEEEEccCCCEE-EEEECCCcEEEEecC--CCeeeeeeec--cCCCCceEEEeeCCCC
Q 011126          276 ----------TGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVI--EHERLDGFDV--QDTDPSCLYFTINHLS  340 (493)
Q Consensus       276 ----------~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~--~~~~~~~~~~--~~~~~~~~~~~~~~~~  340 (493)
                                ......+|.+.|++++|+|++++| ++|+.||.|+|||+.  +++.+..+..  +...+.++.|.+++. 
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-  162 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT-  162 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS-
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC-
Confidence                      011223577789999999999996 899999999999998  7877777653  334445555544331 


Q ss_pred             ceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC---C-eEEEEeCCCeEEEEEC
Q 011126          341 QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQV  416 (493)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---g-~l~sgs~Dg~V~lWd~  416 (493)
                                     ..+.++.++.+.+|+.........+...+.+|...|++++|+|+   + +|++++.|++|++||+
T Consensus       163 ---------------~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~  227 (450)
T 2vdu_B          163 ---------------TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY  227 (450)
T ss_dssp             ---------------EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred             ---------------EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence                           12233445666666654433222234467789999999999999   8 9999999999999999


Q ss_pred             CCCcEEEEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec--------------------------C
Q 011126          417 GIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--------------------------D  468 (493)
Q Consensus       417 ~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~--------------------------~  468 (493)
                      .++.++..+  .|...|++++|+  ++++|++|+.|++|+|||+.+++++...                          .
T Consensus       228 ~~~~~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (450)
T 2vdu_B          228 PQCFIVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI  305 (450)
T ss_dssp             SCTTCEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------C
T ss_pred             CCCceeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccccc
Confidence            999888774  499999999999  8999999999999999999999876422                          2


Q ss_pred             CCCCeEEEEEccCCCEEEEee
Q 011126          469 IREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       469 ~~~~I~sv~~spdG~~l~s~s  489 (493)
                      ....|.+++|+|+|++|++++
T Consensus       306 ~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          306 IEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             BCCCEEEEEECSSSSEEEEEE
T ss_pred             ceEEEEEEEEeCCCCEEEEEE
Confidence            345799999999999999987

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=1.1e-23  Score=209.71  Aligned_cols=196  Identities=22%  Similarity=0.341  Sum_probs=157.5

Q ss_pred             cceeeecccCCEEEEEE-----cc-CCCEEEEEECCCcEEEEecCCCe-------eeeeeeccCCCCceEEEeeCCCCce
Q 011126          276 TGQEFLAHEGSILTMKF-----SL-DGQYLASGGEDGTVRVWKVIEHE-------RLDGFDVQDTDPSCLYFTINHLSQL  342 (493)
Q Consensus       276 ~~~~l~~H~~~I~~l~f-----sp-dg~~Lasgs~Dg~V~iWdl~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  342 (493)
                      ..+.+.+|.+.|++++|     ++ ++++|++|+.|++|+|||+.+.+       ....+..+...+.++.+.+..    
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~----   88 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN----   88 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST----
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC----
Confidence            34568899999999999     77 99999999999999999997542       334444555555555544322    


Q ss_pred             eeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE
Q 011126          343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC  421 (493)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~  421 (493)
                                  ...+.++.++.+.+|+....    +.+..+.+|...|.+++|+|++ +|++++.|++|++||+.....
T Consensus        89 ------------~~l~s~s~D~~v~lwd~~~~----~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~  152 (343)
T 2xzm_R           89 ------------CFAISSSWDKTLRLWDLRTG----TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK  152 (343)
T ss_dssp             ------------TEEEEEETTSEEEEEETTSS----CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE
T ss_pred             ------------CEEEEEcCCCcEEEEECCCC----cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce
Confidence                        23356677889999987653    4567889999999999999999 999999999999999985443


Q ss_pred             EEEe---cCCCcEEEEEEccCCC----------CEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEe
Q 011126          422 LRVF---SHNNYVTSVAFNPVDD----------NYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       422 ~~~~---~h~~~V~~v~fsp~d~----------~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      ....   .|...|.+++|+| ++          .+|++++.||+|++||........+..|...|++++|+|+|++|+++
T Consensus       153 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg  231 (343)
T 2xzm_R          153 FSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATG  231 (343)
T ss_dssp             EECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEE
Confidence            3333   3889999999999 65          79999999999999996554445678899999999999999999999


Q ss_pred             ecCC
Q 011126          489 ACNF  492 (493)
Q Consensus       489 s~d~  492 (493)
                      +.|+
T Consensus       232 s~dg  235 (343)
T 2xzm_R          232 GKDK  235 (343)
T ss_dssp             ETTC
T ss_pred             cCCC
Confidence            9875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.92  E-value=2e-23  Score=215.74  Aligned_cols=289  Identities=19%  Similarity=0.156  Sum_probs=219.6

Q ss_pred             CcceeeeecCCCceeEEccCCCchhhhhccccccCC--CcccccccccCCCCCCccccccCCccccccccchhhhhhhhc
Q 011126          144 HAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS--SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVK  221 (493)
Q Consensus       144 ~~~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~--~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k  221 (493)
                      +...+++|+.+|+....-.    +|...  |..+.+  +..|.....++++.     +|.+...+               
T Consensus       141 dg~i~vwd~~~~~~~~~~~----~h~~~--V~~l~~~~~~~l~s~s~dg~i~-----vwd~~~~~---------------  194 (464)
T 3v7d_B          141 DKMIRVYDSINKKFLLQLS----GHDGG--VWALKYAHGGILVSGSTDRTVR-----VWDIKKGC---------------  194 (464)
T ss_dssp             TSCEEEEETTTTEEEEEEC----CCSSC--EEEEEECSTTEEEEEETTSCEE-----EEETTTTE---------------
T ss_pred             CCcEEEEECCCCcEEEEEe----CCCcC--EEEEEEcCCCEEEEEeCCCCEE-----EEECCCCc---------------
Confidence            3457889998887554322    34443  555554  33666777776666     77654321               


Q ss_pred             cccccccCceeeeecccccceec--cCCCeEEeeecCCeEEEEECCCcccccc----------------ccccceeeecc
Q 011126          222 RGWLKKLGAMARIIDRHGSATLK--PGDHELTLGQRMRRVRVHPVKKQSRELS----------------SLYTGQEFLAH  283 (493)
Q Consensus       222 ~~w~~~~~~~~~~~~~~~~~~fs--p~g~~lasgs~dg~V~vwd~~~~~~~~~----------------~~~~~~~l~~H  283 (493)
                           ....+.+|...+.+++|+  +++.++++|+.|+.|++|++........                .......+.+|
T Consensus       195 -----~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (464)
T 3v7d_B          195 -----CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  269 (464)
T ss_dssp             -----EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred             -----EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence                 111334566777778887  6789999999999999999986543211                01123467889


Q ss_pred             cCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCC
Q 011126          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD  363 (493)
Q Consensus       284 ~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  363 (493)
                      ...|.++  ++++++|++|+.||.|++||+.+++.+..+..+...+.++.+.++..                ..+.++.+
T Consensus       270 ~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~sg~~d  331 (464)
T 3v7d_B          270 MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK----------------RCISASMD  331 (464)
T ss_dssp             SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT----------------EEEEEETT
T ss_pred             cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC----------------EEEEEeCC
Confidence            9999987  56799999999999999999999999888887777777776655432                23456677


Q ss_pred             ceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCE
Q 011126          364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY  443 (493)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~  443 (493)
                      +.+.+|+....    +++..+.+|...|.+++|++ .+|++++.|++|++||+.++.....+.+...+..++|+| ++++
T Consensus       332 g~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~  405 (464)
T 3v7d_B          332 TTIRIWDLENG----ELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYV-SDNI  405 (464)
T ss_dssp             SCEEEEETTTT----EEEEEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEE-CSSE
T ss_pred             CcEEEEECCCC----cEEEEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEe-CCCE
Confidence            78888877643    45778899999999999984 399999999999999999998888888888999999999 9999


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEE--ecCCCCCeEEEEEccCCCEEEEeec
Q 011126          444 FISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       444 l~sgs~Dg~V~IWdl~~~~~~~--~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      |++|+ ||.|+|||+.+++++.  ...+...|++++|+  ++.+++++.
T Consensus       406 l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~  451 (464)
T 3v7d_B          406 LVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVE  451 (464)
T ss_dssp             EEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEE
T ss_pred             EEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEE
Confidence            99998 9999999999999885  57788999999996  556655554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=1.6e-24  Score=213.44  Aligned_cols=261  Identities=13%  Similarity=0.102  Sum_probs=180.5

Q ss_pred             hhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeeccccccee
Q 011126          167 EIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATL  243 (493)
Q Consensus       167 ~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~f  243 (493)
                      +|...  |..+.+   |+.|+....++++.     +|.+.....                  ..+..+.+|...+.+++|
T Consensus        11 ~H~~~--V~~v~~s~~g~~lasgs~D~~v~-----lwd~~~~~~------------------~~~~~l~gH~~~V~~v~~   65 (316)
T 3bg1_A           11 SHEDM--IHDAQMDYYGTRLATCSSDRSVK-----IFDVRNGGQ------------------ILIADLRGHEGPVWQVAW   65 (316)
T ss_dssp             ---CC--EEEEEECGGGCEEEEEETTTEEE-----EEEEETTEE------------------EEEEEEECCSSCEEEEEE
T ss_pred             cccCe--EEEeeEcCCCCEEEEEeCCCeEE-----EEEecCCCc------------------EEEEEEcCCCccEEEEEe
Confidence            44443  555554   67788887777776     776532110                  112345678888889999


Q ss_pred             cc--CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC--CCEEEEEECCCcEEEEecCCCee-
Q 011126          244 KP--GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGTVRVWKVIEHER-  318 (493)
Q Consensus       244 sp--~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~V~iWdl~~~~~-  318 (493)
                      +|  ++.+|++|+.|++|+||++.....     .....+.+|...|++++|+|+  +.+|++|+.|++|++||+..... 
T Consensus        66 ~~~~~~~~l~s~s~D~~v~iWd~~~~~~-----~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~  140 (316)
T 3bg1_A           66 AHPMYGNILASCSYDRKVIIWREENGTW-----EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW  140 (316)
T ss_dssp             CCGGGSSCEEEEETTSCEEEECCSSSCC-----CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred             CCCCCCCEEEEEECCCEEEEEECCCCcc-----eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence            75  489999999999999999875421     122357789999999999997  88999999999999999987632 


Q ss_pred             --eeeeeccCCCCceEEEeeCCCCceeeeeccC-ccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          319 --LDGFDVQDTDPSCLYFTINHLSQLIPIDVDK-EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       319 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                        ...+..+...+.++.|.+............. ........+.++.++.+.+|+..... ..+++..+.+|...|.+++
T Consensus       141 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~  219 (316)
T 3bg1_A          141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVA  219 (316)
T ss_dssp             EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEE
T ss_pred             ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEE
Confidence              2333444455556666554321100000000 00012345677788888888653210 0024566789999999999


Q ss_pred             EeCCC-----eEEEEeCCCeEEEEECCCCc----EEEE-ecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          396 WSKNG-----FLLSSSADKTVRLWQVGIDR----CLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       396 ~sp~g-----~l~sgs~Dg~V~lWd~~~~~----~~~~-~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      |+|++     +|++++.|++|+||++....    .... ..|...|++++|+| ++++|++++.||+|+||+..
T Consensus       220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEEC
T ss_pred             ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEEC
Confidence            99973     79999999999999997621    1222 24889999999999 99999999999999999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.92  E-value=1.9e-24  Score=222.45  Aligned_cols=237  Identities=12%  Similarity=0.100  Sum_probs=174.9

Q ss_pred             eeeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          231 MARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      ..+|...|.+++|+| ++.+|++|+.||+|+|||+.......     ......+...+.+++|+|++++|++|+.||.|+
T Consensus       160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~  234 (435)
T 4e54_B          160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV-----FASSDTINIWFCSLDVSASSRMVVTGDNVGNVI  234 (435)
T ss_dssp             CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEE-----EECCSSCSCCCCCEEEETTTTEEEEECSSSBEE
T ss_pred             ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeE-----EeccCCCCccEEEEEECCCCCEEEEEeCCCcEe
Confidence            345778889999998 68899999999999999987543211     111123455688999999999999999999999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      +||+.. +.+..+..+...+.++.|.+.....               .+.++.++.+.+|+.+...... .+....+|..
T Consensus       235 ~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~---------------~~s~s~d~~v~iwd~~~~~~~~-~~~~~~~h~~  297 (435)
T 4e54_B          235 LLNMDG-KELWNLRMHKKKVTHVALNPCCDWF---------------LATASVDQTVKIWDLRQVRGKA-SFLYSLPHRH  297 (435)
T ss_dssp             EEESSS-CBCCCSBCCSSCEEEEEECTTCSSE---------------EEEEETTSBCCEEETTTCCSSS-CCSBCCBCSS
T ss_pred             eeccCc-ceeEEEecccceEEeeeecCCCceE---------------EEEecCcceeeEEecccccccc-eEEEeeeccc
Confidence            999854 5566666666666666665544322               2344566677777665433221 2233467999


Q ss_pred             CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCC------cEEEEEEccCCCCEEEEEe------------C
Q 011126          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN------YVTSVAFNPVDDNYFISGS------------I  449 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~------~V~~v~fsp~d~~~l~sgs------------~  449 (493)
                      .|++++|+|+| +|++++.|++|+|||+.++.+...+. |..      .+..+.|+| ++.++++++            .
T Consensus       298 ~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~  376 (435)
T 4e54_B          298 PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP-RYNLIVVGRYPDPNFKSCTPYE  376 (435)
T ss_dssp             CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS-SSSCEEEECCCCTTSCCSSTTC
T ss_pred             cccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC-CCCEEEEEEcCCCCeEEEEecC
Confidence            99999999999 99999999999999999988776653 321      234567787 666666664            2


Q ss_pred             CCeEEEEeCCCCeEEE--ecCCCCCeEEE-EEccCCCEEEEeec
Q 011126          450 DGKVRIWEVRRCQVVD--YTDIREIVSAV-CYCPDGKVRQNSAC  490 (493)
Q Consensus       450 Dg~V~IWdl~~~~~~~--~~~~~~~I~sv-~~spdG~~l~s~s~  490 (493)
                      ++.|+|||+.+++++.  ...|...|.++ +|+|+|++|++|+.
T Consensus       377 ~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d  420 (435)
T 4e54_B          377 LRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMG  420 (435)
T ss_dssp             CCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECS
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcC
Confidence            3579999999998874  34677888887 69999999988763

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.5e-23  Score=217.63  Aligned_cols=232  Identities=12%  Similarity=0.030  Sum_probs=174.5

Q ss_pred             ecccccceeccCCCeEEeeecCCeEEEEECCCcccc----------------------ccccccceeee-cccCCEEEEE
Q 011126          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE----------------------LSSLYTGQEFL-AHEGSILTMK  291 (493)
Q Consensus       235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~----------------------~~~~~~~~~l~-~H~~~I~~l~  291 (493)
                      .+.+.+++|+|||+++|+++.|++|+  +.......                      +........+. .|...|++++
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~va   92 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCK   92 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEE
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEE
Confidence            36677899999999999999999997  42221100                      00111111222 5688899999


Q ss_pred             EccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCC-----CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceE
Q 011126          292 FSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC  366 (493)
Q Consensus       292 fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  366 (493)
                      |+|+|++||+++.||.|+|||...  ++..+. +..     .+.++.|++++.                ..+.++.++.+
T Consensus        93 wSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~----------------~LAsgs~DGtV  153 (588)
T 2j04_A           93 PSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIES----------------SIVVGNEDGEL  153 (588)
T ss_dssp             ECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSS----------------CEEEEETTSEE
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCC----------------EEEEEcCCCEE
Confidence            999999999999999999999644  444444 333     255566655442                23456678888


Q ss_pred             EEcCCCceeeccc---ceEEE----ecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcE---EEEe--cCCCcEEEE
Q 011126          367 VVLPPKVFRLLEK---PLHEF----QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC---LRVF--SHNNYVTSV  434 (493)
Q Consensus       367 ~~~~~~~~~~~~~---~~~~~----~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~---~~~~--~h~~~V~~v  434 (493)
                      .+|+.....+.+.   .+.++    .+|...|.+++|+|+| +++++.|++|++||+..+..   .+++  .|...|.++
T Consensus       154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv  232 (588)
T 2j04_A          154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL  232 (588)
T ss_dssp             EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE
T ss_pred             EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE
Confidence            8888765322111   24565    6788899999999999 99999999999999988774   3455  377899999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEE--ccCCCEEEEeecCC
Q 011126          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY--CPDGKVRQNSACNF  492 (493)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~--spdG~~l~s~s~d~  492 (493)
                      +|+   +++||+++ +++|++||+.+++.. ...+|...|+.+.|  +|||+.++++.-++
T Consensus       233 aFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG  289 (588)
T 2j04_A          233 KIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTS  289 (588)
T ss_dssp             EEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred             EEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC
Confidence            998   58999987 699999999999885 44489999999999  99999999887554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.91  E-value=6e-24  Score=218.01  Aligned_cols=239  Identities=9%  Similarity=0.147  Sum_probs=181.8

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCc--ccccc--ccccceeee--c--ccCCEEEEE--EccCCCEEEEE
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQ--SRELS--SLYTGQEFL--A--HEGSILTMK--FSLDGQYLASG  302 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~--~~~~~--~~~~~~~l~--~--H~~~I~~l~--fspdg~~Lasg  302 (493)
                      .|...+.+++|+|++.+|++|+.||.|+||++...  .....  .......+.  .  |...+.++.  +++++.+|++|
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            46677888999999999999999999999998521  11110  001111111  2  567788888  56889999999


Q ss_pred             ECCCcEEEEecCCCeeeeeeec--cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126          303 GEDGTVRVWKVIEHERLDGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (493)
Q Consensus       303 s~Dg~V~iWdl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (493)
                      +.|+.|++||+.+++.+..+..  +...+.++.+.++.                ...+.++.++.+.+|+.+.    .++
T Consensus       189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~----------------~~l~s~~~dg~i~iwd~~~----~~~  248 (437)
T 3gre_A          189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC----------------CVLILGTTRGIIDIWDIRF----NVL  248 (437)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS----------------CEEEEEETTSCEEEEETTT----TEE
T ss_pred             eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC----------------CEEEEEcCCCeEEEEEcCC----ccE
Confidence            9999999999999999888876  55566666654432                2234566778888888765    334


Q ss_pred             eEEEe-cCCCCEeEEEEeC----CC-eEEEEeCCCeEEEEECCCCcEEEEec---------------------------C
Q 011126          381 LHEFQ-GHSSEVLDLSWSK----NG-FLLSSSADKTVRLWQVGIDRCLRVFS---------------------------H  427 (493)
Q Consensus       381 ~~~~~-~h~~~V~~l~~sp----~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---------------------------h  427 (493)
                      +..+. .|...|.+++|+|    ++ +|++++.|++|+|||+.+++++..+.                           |
T Consensus       249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  328 (437)
T 3gre_A          249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS  328 (437)
T ss_dssp             EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred             EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence            56665 7888999997765    46 99999999999999999999887775                           5


Q ss_pred             CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec-------------------------------------CC
Q 011126          428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT-------------------------------------DI  469 (493)
Q Consensus       428 ~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~-------------------------------------~~  469 (493)
                      ...|++++|++  +++|++|+.||.|++||+.+++... +.                                     .|
T Consensus       329 ~~~v~~l~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  406 (437)
T 3gre_A          329 LNALSTISVSN--DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH  406 (437)
T ss_dssp             GGGGCCEEEET--TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------
T ss_pred             CCceEEEEECC--ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccc
Confidence            56688999984  5899999999999999999876332 22                                     28


Q ss_pred             CCCeEEEEEccC--CCEEEEeecCCC
Q 011126          470 REIVSAVCYCPD--GKVRQNSACNFC  493 (493)
Q Consensus       470 ~~~I~sv~~spd--G~~l~s~s~d~~  493 (493)
                      ...|++++|+++  +.+|++++.|++
T Consensus       407 ~~~I~~i~~~~~~~~~~l~s~~~dG~  432 (437)
T 3gre_A          407 HDIINSISTCEVDETPLLVACDNSGL  432 (437)
T ss_dssp             CCCEEEEEEEESSSSEEEEEEETTSC
T ss_pred             ccceeeEeeeccCCceEEEEEcCCce
Confidence            899999999998  779999988764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.91  E-value=1.5e-22  Score=208.00  Aligned_cols=218  Identities=21%  Similarity=0.368  Sum_probs=178.8

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  320 (493)
                      .++++++.+|++|+.||.|++||..+..       ....+.+|.+.|++++|  ++++|++|+.||+|++||+.+++.+.
T Consensus       137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~  207 (435)
T 1p22_A          137 YCLQYDDQKIVSGLRDNTIKIWDKNTLE-------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN  207 (435)
T ss_dssp             EEEECCSSEEEEEESSSCEEEEESSSCC-------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             EEEEECCCEEEEEeCCCeEEEEeCCCCe-------EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            3566699999999999999999987543       33457899999999999  78899999999999999999999888


Q ss_pred             eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC
Q 011126          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG  400 (493)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  400 (493)
                      .+..+...+.++.+.             .     ...+.++.++.+.+|+....... .....+.+|...|.+++|.. .
T Consensus       208 ~~~~h~~~v~~l~~~-------------~-----~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~  267 (435)
T 1p22_A          208 TLIHHCEAVLHLRFN-------------N-----GMMVTCSKDRSIAVWDMASPTDI-TLRRVLVGHRAAVNVVDFDD-K  267 (435)
T ss_dssp             EECCCCSCEEEEECC-------------T-----TEEEEEETTSCEEEEECSSSSCC-EEEEEECCCSSCEEEEEEET-T
T ss_pred             EEcCCCCcEEEEEEc-------------C-----CEEEEeeCCCcEEEEeCCCCCCc-eeeeEecCCCCcEEEEEeCC-C
Confidence            887665554444432             1     13456667788888876543211 12366789999999999932 2


Q ss_pred             eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEE
Q 011126          401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY  478 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~  478 (493)
                      +|++|+.|++|++||+++++++..+. |...|.++.|+   +++|++|+.||.|++||+++++.+ .+..|...|++++|
T Consensus       268 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  344 (435)
T 1p22_A          268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF  344 (435)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred             EEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence            99999999999999999999999887 89999999994   579999999999999999998877 47789999999999


Q ss_pred             ccCCCEEEEeecCC
Q 011126          479 CPDGKVRQNSACNF  492 (493)
Q Consensus       479 spdG~~l~s~s~d~  492 (493)
                        ++++|++++.|+
T Consensus       345 --~~~~l~sg~~dg  356 (435)
T 1p22_A          345 --DNKRIVSGAYDG  356 (435)
T ss_dssp             --CSSEEEEEETTS
T ss_pred             --cCCEEEEEeCCC
Confidence              889999999875

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.91  E-value=8.6e-23  Score=201.11  Aligned_cols=209  Identities=20%  Similarity=0.281  Sum_probs=159.2

Q ss_pred             ceeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCCCe-----eeeeeeccCCCCceEEEeeCCCCcee-------
Q 011126          277 GQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHE-----RLDGFDVQDTDPSCLYFTINHLSQLI-------  343 (493)
Q Consensus       277 ~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-------  343 (493)
                      ..+|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+.+     ....+..+...+.++.|.+++...+.       
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            3468999999999999997 6899999999999999997654     34455666667777777655432111       


Q ss_pred             -eeeccCccc------------------cceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC---e
Q 011126          344 -PIDVDKEKI------------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---F  401 (493)
Q Consensus       344 -~~~~~~~~~------------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g---~  401 (493)
                       .+.......                  .....+.++.++.+.+|+.....   .......+|...|..++|++++   +
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC---KYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE---EEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc---eEEEEeccccCcccceEEccCCCCcE
Confidence             111111000                  01122345556667777654322   1233456799999999999875   7


Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEcc
Q 011126          402 LLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP  480 (493)
Q Consensus       402 l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~sp  480 (493)
                      +++++.|++|++||+++++++..+. |...|++++|+| ++++|++|+.||+|+|||+++.+.+....+...|++++|+|
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~  266 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP  266 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred             EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCC
Confidence            8999999999999999999988886 999999999999 99999999999999999999999887777778999999999


Q ss_pred             CCCEEEEee
Q 011126          481 DGKVRQNSA  489 (493)
Q Consensus       481 dG~~l~s~s  489 (493)
                      ++.+++++.
T Consensus       267 ~~~~~~~~~  275 (340)
T 4aow_A          267 NRYWLCAAT  275 (340)
T ss_dssp             SSSEEEEEE
T ss_pred             CCceeeccC
Confidence            997776553

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.2e-22  Score=209.84  Aligned_cols=230  Identities=11%  Similarity=0.011  Sum_probs=177.0

Q ss_pred             eeeeecccccceeccCCCeE-EeeecCCeEEEEECC--Cccccccccccceeee--cccCCEEEEEEccCCCEEEEEECC
Q 011126          231 MARIIDRHGSATLKPGDHEL-TLGQRMRRVRVHPVK--KQSRELSSLYTGQEFL--AHEGSILTMKFSLDGQYLASGGED  305 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~l-asgs~dg~V~vwd~~--~~~~~~~~~~~~~~l~--~H~~~I~~l~fspdg~~Lasgs~D  305 (493)
                      ...+...+.+++|+|++++| ++|+.||.|+||++.  ...       ..+.+.  .|...|++++|+|++++|++|+.|
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~  170 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-------VLKLRKRFCFSKRPNAISIAEDDTTVIIADKF  170 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-------CEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-------eeeeeecccCCCCceEEEEcCCCCEEEEEeCC
Confidence            34566678889999999996 899999999999987  332       112333  577899999999999999999999


Q ss_pred             CcEEEEecCCCeeee----eeeccCCCCceEEEeeCC-CCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126          306 GTVRVWKVIEHERLD----GFDVQDTDPSCLYFTINH-LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (493)
Q Consensus       306 g~V~iWdl~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (493)
                      |.|++|++.++....    .+..+...+.++.|.++. ..              ...+.++.++.+.+|+...    .+.
T Consensus       171 g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~--------------~~l~s~~~d~~i~vwd~~~----~~~  232 (450)
T 2vdu_B          171 GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH--------------QFIITSDRDEHIKISHYPQ----CFI  232 (450)
T ss_dssp             SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC--------------EEEEEEETTSCEEEEEESC----TTC
T ss_pred             CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC--------------cEEEEEcCCCcEEEEECCC----Cce
Confidence            999999998877554    566666667777777651 11              1223445567777776543    233


Q ss_pred             eEE-EecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecC--------------------------CCcEE
Q 011126          381 LHE-FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH--------------------------NNYVT  432 (493)
Q Consensus       381 ~~~-~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h--------------------------~~~V~  432 (493)
                      +.. +.+|...|.+++|+ ++ +|++++.|++|+|||+.+++++..+..                          ...|.
T Consensus       233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (450)
T 2vdu_B          233 VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS  311 (450)
T ss_dssp             EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred             eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence            444 55899999999999 88 999999999999999999998887751                          24689


Q ss_pred             EEEEccCCCCEEEEEe-CCCeEEEEeC--CCC---eEEE-ecCCCCCeEEEEEccCCCEEEEe
Q 011126          433 SVAFNPVDDNYFISGS-IDGKVRIWEV--RRC---QVVD-YTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       433 ~v~fsp~d~~~l~sgs-~Dg~V~IWdl--~~~---~~~~-~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      +++|+| ++++|++++ .|+.|+||++  ..+   +.+. +..+ ..|++++|+|++.+++++
T Consensus       312 ~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~  372 (450)
T 2vdu_B          312 KIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLD  372 (450)
T ss_dssp             EEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEEC
T ss_pred             EEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEe
Confidence            999999 999999999 8999999999  554   4443 4444 889999999965444433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.91  E-value=1.3e-22  Score=216.39  Aligned_cols=238  Identities=16%  Similarity=0.230  Sum_probs=191.9

Q ss_pred             eeeeecc-cccceecc--CCCeEEeeecCCeEEEEECCCcccc-ccccccceeeecccCCEEEEEEccCCCEEEEEECC-
Q 011126          231 MARIIDR-HGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRE-LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-  305 (493)
Q Consensus       231 ~~~~~~~-~~~~~fsp--~g~~lasgs~dg~V~vwd~~~~~~~-~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-  305 (493)
                      +..|... +.+++|+|  ++++|++|+.||.|+||++...... .........+.+|...|.+++|+|++++|++++.+ 
T Consensus        59 ~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  138 (615)
T 1pgu_A           59 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR  138 (615)
T ss_dssp             ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS
T ss_pred             EecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCC
Confidence            4456677 88899999  9999999999999999998633100 00112234678899999999999999999999988 


Q ss_pred             ---CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126          306 ---GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (493)
Q Consensus       306 ---g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (493)
                         +.|++||  .++.+..+..+...+.++.|.+....               ..+.++.++.+.+|+....    +.+.
T Consensus       139 ~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~---------------~l~~~~~d~~v~vwd~~~~----~~~~  197 (615)
T 1pgu_A          139 DNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPM---------------RSMTVGDDGSVVFYQGPPF----KFSA  197 (615)
T ss_dssp             SCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSC---------------EEEEEETTTEEEEEETTTB----EEEE
T ss_pred             CCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCc---------------EEEEEeCCCcEEEEeCCCc----ceee
Confidence               6888888  56677777777777777776655432               2344566778888876554    3467


Q ss_pred             EEecCCC---CEeEEEEeCC-C-eEEEEeCCCeEEEEECCCCcEEEEe-----cCCCcEEEEEEccCCCCEEEEEeCCCe
Q 011126          383 EFQGHSS---EVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVF-----SHNNYVTSVAFNPVDDNYFISGSIDGK  452 (493)
Q Consensus       383 ~~~~h~~---~V~~l~~sp~-g-~l~sgs~Dg~V~lWd~~~~~~~~~~-----~h~~~V~~v~fsp~d~~~l~sgs~Dg~  452 (493)
                      .+.+|..   .|.+++|+|+ + +|++++.|+.|++||+.+++.+..+     .|...|++++|+  ++++|++++.||.
T Consensus       198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~  275 (615)
T 1pgu_A          198 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADAT  275 (615)
T ss_dssp             EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSE
T ss_pred             eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCc
Confidence            7888999   9999999999 8 9999999999999999999999999     799999999999  7899999999999


Q ss_pred             EEEEeCCCCeEEE-ecCC----CCCeEEEEEccCCCEEEEeecCC
Q 011126          453 VRIWEVRRCQVVD-YTDI----REIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       453 V~IWdl~~~~~~~-~~~~----~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      |++||+.+++.+. +..+    ...+.++.|. +++++++++.+.
T Consensus       276 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g  319 (615)
T 1pgu_A          276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG  319 (615)
T ss_dssp             EEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS
T ss_pred             EEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC
Confidence            9999999988774 3333    4678888885 899999988765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.91  E-value=1.5e-22  Score=197.40  Aligned_cols=210  Identities=19%  Similarity=0.216  Sum_probs=156.6

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCcccccc----------------------------------ccccce
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------------------------------SLYTGQ  278 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~----------------------------------~~~~~~  278 (493)
                      .|...+.+++|+|++++||+|+.||+|+||++........                                  ......
T Consensus        65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~  144 (318)
T 4ggc_A           65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA  144 (318)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEE
Confidence            3445677899999999999999999999999876442110                                  011123


Q ss_pred             eeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeee----eeccCCCCceEEEeeCCCCceeeeeccCccccc
Q 011126          279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG----FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK  354 (493)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (493)
                      .+.+|...+..+.|.+++++|++++.|++|++||+.+++....    ...+...+..+.+.+..             ...
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~  211 (318)
T 4ggc_A          145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ-------------SNV  211 (318)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTS-------------TTE
T ss_pred             EEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCC-------------CcE
Confidence            4678999999999999999999999999999999987653221    11222222222222222             222


Q ss_pred             eeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEE--eCCCeEEEEECCCCcEEEEec-CCCc
Q 011126          355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS--SADKTVRLWQVGIDRCLRVFS-HNNY  430 (493)
Q Consensus       355 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sg--s~Dg~V~lWd~~~~~~~~~~~-h~~~  430 (493)
                      .....++.++.+.+|+.....     ......|...+..+.|+|.+ .++++  +.|++|+|||+.+++++..+. |.+.
T Consensus       212 ~~~~~~~~~~~i~lwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~  286 (318)
T 4ggc_A          212 LATGGGTSDRHIRIWNVCSGA-----CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR  286 (318)
T ss_dssp             EEEEECTTTCEEEEEETTTCC-----EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC
T ss_pred             EEEEecCCCCEEEEEeccccc-----ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCC
Confidence            233455667777777665432     33445678889999999998 55544  479999999999999999997 9999


Q ss_pred             EEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126          431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       431 V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~  461 (493)
                      |++++|+| ++++|+||+.||+|+|||+.+.
T Consensus       287 V~~l~~sp-dg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          287 VLSLTMSP-DGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEEEECT-TSSCEEEEETTTEEEEECCSCC
T ss_pred             EEEEEEcC-CCCEEEEEecCCeEEEEECCCC
Confidence            99999999 9999999999999999999764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.91  E-value=6.4e-23  Score=200.63  Aligned_cols=181  Identities=10%  Similarity=0.071  Sum_probs=129.9

Q ss_pred             cCCCeEEeee--cCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc---CCCEEEEEECCCcEEEEecCCCeee
Q 011126          245 PGDHELTLGQ--RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQYLASGGEDGTVRVWKVIEHERL  319 (493)
Q Consensus       245 p~g~~lasgs--~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~~Lasgs~Dg~V~iWdl~~~~~~  319 (493)
                      ++++++.++.  .|+.|++|++....+.      ...+.+|...+..++|+|   ++.+||+|+.|++|+|||+.+++++
T Consensus       143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~------~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l  216 (356)
T 2w18_A          143 TKRRLVSSSGTLSDQQVEVMTFAEDGGG------KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL  216 (356)
T ss_dssp             TTTEEEEEESSSTTCEEEEEEECTTSCE------EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCcEEEecccCCCCcEEEEEECCCCce------eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE
Confidence            3444444422  4888888887543222      124568888999999999   7799999999999999999999877


Q ss_pred             eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (493)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (493)
                      .++..+..                                                           |...+.+++|+|+
T Consensus       217 ~tL~g~~~-----------------------------------------------------------~v~~v~~vafSpd  237 (356)
T 2w18_A          217 KKMHIDDS-----------------------------------------------------------YQASVCHKAYSEM  237 (356)
T ss_dssp             EEEECCC--------------------------------------------------------------CCCEEEEEEET
T ss_pred             EEEcCCCc-----------------------------------------------------------ceeeeEEEEECCC
Confidence            76643211                                                           1124455566665


Q ss_pred             C-e------------EEEEeCCCeEEEEECCCCcEEEEe------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          400 G-F------------LLSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       400 g-~------------l~sgs~Dg~V~lWd~~~~~~~~~~------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      | +            +++|+.|++|++||..+++++.++      .|...+.+..+   ++.++++|+.|++|+|||+.+
T Consensus       238 G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~t  314 (356)
T 2w18_A          238 GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLL  314 (356)
T ss_dssp             TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTT
T ss_pred             CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCC
Confidence            5 3            478899999999999999988765      25555544444   468999999999999999999


Q ss_pred             CeEEE-ecCCCCCeE-EEEEccCCCEEEEeecCCC
Q 011126          461 CQVVD-YTDIREIVS-AVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       461 ~~~~~-~~~~~~~I~-sv~~spdG~~l~s~s~d~~  493 (493)
                      ++++. +.+|...+. .++|+|||++|++|+.|++
T Consensus       315 Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T  349 (356)
T 2w18_A          315 GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN  349 (356)
T ss_dssp             CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred             CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            99885 567776554 6899999999999998874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.4e-23  Score=207.82  Aligned_cols=221  Identities=14%  Similarity=0.139  Sum_probs=163.8

Q ss_pred             ceeeeecccccceeccC--CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC--CCEEEEEECC
Q 011126          230 AMARIIDRHGSATLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGED  305 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~--g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~D  305 (493)
                      .+..|...+.+++|+|+  +.+|++|+.||.|+||++.....     .....+.+|...|.+++|+|+  +.+|++++.|
T Consensus        50 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  124 (379)
T 3jrp_A           50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-----SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  124 (379)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE-----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             EecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce-----eEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence            34557778888999877  99999999999999999875431     123456789999999999999  9999999999


Q ss_pred             CcEEEEecCCCeee--eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126          306 GTVRVWKVIEHERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (493)
Q Consensus       306 g~V~iWdl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (493)
                      +.|++||+.+....  ..+..+...+.++.+.+........   ..........+.++.++.+.+|+.............
T Consensus       125 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  201 (379)
T 3jrp_A          125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE---HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST  201 (379)
T ss_dssp             SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred             CcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccc---ccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEE
Confidence            99999999887433  3344455555556555531100000   000001223445566777888866433322334667


Q ss_pred             EecCCCCEeEEEEeCC---C-eEEEEeCCCeEEEEECCCCc---EEEEe---cCCCcEEEEEEccCCCCEEEEEeCCCeE
Q 011126          384 FQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQVGIDR---CLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKV  453 (493)
Q Consensus       384 ~~~h~~~V~~l~~sp~---g-~l~sgs~Dg~V~lWd~~~~~---~~~~~---~h~~~V~~v~fsp~d~~~l~sgs~Dg~V  453 (493)
                      +.+|...|.+++|+|+   + +|++++.|+.|+|||+.++.   ....+   .|...|++++|+| ++++|++++.||.|
T Consensus       202 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i  280 (379)
T 3jrp_A          202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKV  280 (379)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSE
T ss_pred             EecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcE
Confidence            8899999999999999   8 99999999999999999864   22222   2889999999999 99999999999999


Q ss_pred             EEEeCC
Q 011126          454 RIWEVR  459 (493)
Q Consensus       454 ~IWdl~  459 (493)
                      +||++.
T Consensus       281 ~iw~~~  286 (379)
T 3jrp_A          281 TLWKEN  286 (379)
T ss_dssp             EEEEEE
T ss_pred             EEEeCC
Confidence            999987

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4e-22  Score=193.72  Aligned_cols=260  Identities=18%  Similarity=0.148  Sum_probs=189.5

Q ss_pred             CcceeeeecCCCceeEEccCCCchhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhh
Q 011126          144 HAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKV  220 (493)
Q Consensus       144 ~~~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~  220 (493)
                      +...+++|++++........    |...  +..+.+   ++.|.....++.+.     +|.+......            
T Consensus        38 dg~v~vw~~~~~~~~~~~~~----~~~~--v~~~~~~~~~~~l~~~~~dg~i~-----~~~~~~~~~~------------   94 (313)
T 3odt_A           38 DGTVRLWSKDDQWLGTVVYT----GQGF--LNSVCYDSEKELLLFGGKDTMIN-----GVPLFATSGE------------   94 (313)
T ss_dssp             TSEEEEEEESSSEEEEEEEE----CSSC--EEEEEEETTTTEEEEEETTSCEE-----EEETTCCTTS------------
T ss_pred             CCcEEEEECCCCEEEEEeec----CCcc--EEEEEECCCCCEEEEecCCCeEE-----EEEeeecCCC------------
Confidence            34578888877765443221    1111  334433   67777777766655     6655432110            


Q ss_pred             ccccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEE
Q 011126          221 KRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYL  299 (493)
Q Consensus       221 k~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~L  299 (493)
                           +....+..|...+.+++|  ++.++++++.|+.|++|+...         ....+..|...|.++.|.| ++.+|
T Consensus        95 -----~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           95 -----DPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGS---------LVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             -----CC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTE---------EEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             -----CcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCc---------EEEecccCCCceeEEEEccCCCCEE
Confidence                 112234455566666777  678999999999999999221         2235678999999999999 99999


Q ss_pred             EEEECCCcEEEEecCCCeeeeeeec-cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126          300 ASGGEDGTVRVWKVIEHERLDGFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (493)
Q Consensus       300 asgs~Dg~V~iWdl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (493)
                      ++++.||.|++||  ..+....+.. +...+.++.+.+...                 .+.++.++.+.+|+....    
T Consensus       159 ~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-----------------~~~~~~dg~i~i~d~~~~----  215 (313)
T 3odt_A          159 LTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-----------------FISCSNDGLIKLVDMHTG----  215 (313)
T ss_dssp             EEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-----------------EEEEETTSEEEEEETTTC----
T ss_pred             EEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-----------------EEEccCCCeEEEEECCch----
Confidence            9999999999999  4455555554 445555566555432                 345566777888877643    


Q ss_pred             cceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126          379 KPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (493)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd  457 (493)
                      +++..+.+|...|++++|+|++.|++++.|+.|++||+.+++++..+. |...|++++|+| ++. +++++.||.|++||
T Consensus       216 ~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~  293 (313)
T 3odt_A          216 DVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRIFS  293 (313)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEEEE
T ss_pred             hhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEEEe
Confidence            457788899999999999999999999999999999999999998886 888999999999 887 66799999999999


Q ss_pred             CCCCeEEEec
Q 011126          458 VRRCQVVDYT  467 (493)
Q Consensus       458 l~~~~~~~~~  467 (493)
                      +.+++.+...
T Consensus       294 ~~~~~~~~~~  303 (313)
T 3odt_A          294 QEKSRWASED  303 (313)
T ss_dssp             SCGGGCCC--
T ss_pred             CCCCceeehh
Confidence            9988766433

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=7.2e-23  Score=203.61  Aligned_cols=227  Identities=12%  Similarity=0.082  Sum_probs=159.1

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCCcccc--ccccccceee-ecccCCEEEEEEcc--CCCEEEEEECCCcEEE
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE--LSSLYTGQEF-LAHEGSILTMKFSL--DGQYLASGGEDGTVRV  310 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~--~~~~~~~~~l-~~H~~~I~~l~fsp--dg~~Lasgs~Dg~V~i  310 (493)
                      ..+.++.++|+   +++++.|++|++|+.......  +......+.+ .+|.+.|.+++|+|  ++++|++|+.||+|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            45667889998   999999999999988753211  1111111122 36778999999999  9999999999999999


Q ss_pred             EecCCCeeeeeeecc-CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce-EEEec-C
Q 011126          311 WKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL-HEFQG-H  387 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~-h  387 (493)
                      ||+.+++.......+ ...+.++.+.+++                ...+.++.++.+.+|+.+...    .+ ..+.+ |
T Consensus       154 wd~~~~~~~~~~~~~~~~~i~~~~~~pdg----------------~~lasg~~dg~i~iwd~~~~~----~~~~~~~~~h  213 (343)
T 3lrv_A          154 QSYEDDSQYIVHSAKSDVEYSSGVLHKDS----------------LLLALYSPDGILDVYNLSSPD----QASSRFPVDE  213 (343)
T ss_dssp             EESSSSCEEEEECCCSSCCCCEEEECTTS----------------CEEEEECTTSCEEEEESSCTT----SCCEECCCCT
T ss_pred             EECCCCcEEEEEecCCCCceEEEEECCCC----------------CEEEEEcCCCEEEEEECCCCC----CCccEEeccC
Confidence            999998876555333 3345566665433                223456778888888876532    23 56777 9


Q ss_pred             CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec----CCCcE--EEEEEccCCCCEEEEEeC-CCeEEEEeCC
Q 011126          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYV--TSVAFNPVDDNYFISGSI-DGKVRIWEVR  459 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~----h~~~V--~~v~fsp~d~~~l~sgs~-Dg~V~IWdl~  459 (493)
                      ...|++++|+|++ +|++++ |++|+|||+++.+++..+.    |...+  .+++|+| ++++|++++. |+.|+||++.
T Consensus       214 ~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          214 EAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             TSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEc
Confidence            9999999999999 899999 5599999999987765543    33333  4699999 9999999998 9999999996


Q ss_pred             CCeEE-EecCCCCCeEEEEEcc---CCCEEEEeecC
Q 011126          460 RCQVV-DYTDIREIVSAVCYCP---DGKVRQNSACN  491 (493)
Q Consensus       460 ~~~~~-~~~~~~~~I~sv~~sp---dG~~l~s~s~d  491 (493)
                      +.... ..    .++..++|.|   +++.+++++.|
T Consensus       292 ~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d  323 (343)
T 3lrv_A          292 KKTKNWTK----DEESALCLQSDTADFTDMDVVCGD  323 (343)
T ss_dssp             TTTCSEEE----EEEEECCC----CCCCEEEEEEET
T ss_pred             ccccceEe----cCceeEecCccccccceeEEEecC
Confidence            54321 11    3455555555   55555555443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.90  E-value=1.8e-22  Score=207.31  Aligned_cols=216  Identities=17%  Similarity=0.310  Sum_probs=172.3

Q ss_pred             ccCceeeeecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEcc-CCCEEEEEEC
Q 011126          227 KLGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGE  304 (493)
Q Consensus       227 ~~~~~~~~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~  304 (493)
                      ....+..|...+.+++|+|++. +|++|+.||.|+||++...............+.+|...|.+++|+| ++.+|++++.
T Consensus       173 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~  252 (430)
T 2xyi_A          173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD  252 (430)
T ss_dssp             CSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET
T ss_pred             CcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC
Confidence            3445667778888899999998 9999999999999999874433223333456779999999999999 7789999999


Q ss_pred             CCcEEEEecCCC---eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126          305 DGTVRVWKVIEH---ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (493)
Q Consensus       305 Dg~V~iWdl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (493)
                      ||.|++||+.++   +.+..+..+...+.++.|.+....               ..+.++.++.+.+|+.+..   ..++
T Consensus       253 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~---------------~l~tg~~dg~v~vwd~~~~---~~~~  314 (430)
T 2xyi_A          253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF---------------ILATGSADKTVALWDLRNL---KLKL  314 (430)
T ss_dssp             TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTT---------------EEEEEETTSEEEEEETTCT---TSCS
T ss_pred             CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCC---------------EEEEEeCCCeEEEEeCCCC---CCCe
Confidence            999999999877   455566666666666666554432               2335566778888877642   2467


Q ss_pred             EEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCC--------------CcEEEEec-CCCcEEEEEEccCCCC-E
Q 011126          382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI--------------DRCLRVFS-HNNYVTSVAFNPVDDN-Y  443 (493)
Q Consensus       382 ~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~--------------~~~~~~~~-h~~~V~~v~fsp~d~~-~  443 (493)
                      ..+.+|...|++++|+|++  +|++++.|++|+|||+..              ...+..+. |...|++++|+| ++. +
T Consensus       315 ~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~  393 (430)
T 2xyi_A          315 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWI  393 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS-SSTTE
T ss_pred             EEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC-CCCCE
Confidence            8889999999999999998  799999999999999987              24555554 889999999999 777 9


Q ss_pred             EEEEeCCCeEEEEeCCCC
Q 011126          444 FISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       444 l~sgs~Dg~V~IWdl~~~  461 (493)
                      |++++.||.|+||++...
T Consensus       394 l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          394 ICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEEEETTSEEEEEEECHH
T ss_pred             EEEEECCCCEEEeEcccc
Confidence            999999999999999754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.90  E-value=6.4e-22  Score=203.72  Aligned_cols=224  Identities=20%  Similarity=0.361  Sum_probs=184.1

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+.+|.+.+.. ++++++++|++|+.||.|++|++....       ....+.+|.+.|+++.|+  +.+|++|+.||+|+
T Consensus       113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~  182 (445)
T 2ovr_B          113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-------CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLK  182 (445)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-------EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc-------EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence            35556555432 577789999999999999999987543       234577999999999997  66999999999999


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      +||+.+++.+..+..+...+.++.+.                  ....+.++.++.+.+|+...    .+.+..+.+|..
T Consensus       183 vwd~~~~~~~~~~~~h~~~v~~~~~~------------------~~~l~s~s~dg~i~~wd~~~----~~~~~~~~~~~~  240 (445)
T 2ovr_B          183 VWNAETGECIHTLYGHTSTVRCMHLH------------------EKRVVSGSRDATLRVWDIET----GQCLHVLMGHVA  240 (445)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEE------------------TTEEEEEETTSEEEEEESSS----CCEEEEEECCSS
T ss_pred             EEECCcCcEEEEECCCCCcEEEEEec------------------CCEEEEEeCCCEEEEEECCC----CcEEEEEcCCcc
Confidence            99999999888887776655555542                  11245667788888887764    345778889999


Q ss_pred             CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-Ee
Q 011126          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY  466 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~  466 (493)
                      .|.+++|  ++ ++++++.|+.|++||+++++++..+. |...|+++.|   ++.+|++|+.||.|++||+++++.+ .+
T Consensus       241 ~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~  315 (445)
T 2ovr_B          241 AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTL  315 (445)
T ss_dssp             CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence            9999999  45 99999999999999999999999887 8999999999   5789999999999999999998877 47


Q ss_pred             cCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          467 TDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       467 ~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ..|...+.++.+  +++++++++.|+
T Consensus       316 ~~~~~~v~~~~~--~~~~l~~~~~dg  339 (445)
T 2ovr_B          316 TGHQSLTSGMEL--KDNILVSGNADS  339 (445)
T ss_dssp             CCCCSCEEEEEE--ETTEEEEEETTS
T ss_pred             cCCcccEEEEEE--eCCEEEEEeCCC
Confidence            788888887776  577999998775

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.90  E-value=3.5e-22  Score=204.37  Aligned_cols=264  Identities=18%  Similarity=0.223  Sum_probs=192.0

Q ss_pred             cceeeeecCCCceeEEccCCCchhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhc
Q 011126          145 AACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVK  221 (493)
Q Consensus       145 ~~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k  221 (493)
                      ...+|||+.+|+..-+-..  .+|...  |..|.+   |+.|+....++++.     +|.+....               
T Consensus       125 ~tV~lWd~~tg~~~~~~~~--~~~~~~--V~sv~fspdg~~lasgs~Dg~v~-----iWd~~~~~---------------  180 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQM--EQPGEY--ISSVAWIKEGNYLAVGTSSAEVQ-----LWDVQQQK---------------  180 (420)
T ss_dssp             TEEEEEETTTCCEEEEEEC--CSTTCC--EEEEEECTTSSEEEEEETTSCEE-----EEETTTTE---------------
T ss_pred             CEEEEEECCCCCEEEEEEe--cCCCCc--EEEEEECCCCCEEEEEECCCeEE-----EEEcCCCc---------------
Confidence            3578999999986543222  233333  566655   88899988888877     88764321               


Q ss_pred             cccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE
Q 011126          222 RGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS  301 (493)
Q Consensus       222 ~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las  301 (493)
                           .+..+.+|...+.  ++++++.+|++|+.|+.+++|+.......      ...+.+|...+..+.|+|++++|++
T Consensus       181 -----~~~~~~~h~~~v~--~~s~~~~~l~sgs~d~~i~~~d~~~~~~~------~~~~~~h~~~~~~~~~~~~g~~l~s  247 (420)
T 4gga_A          181 -----RLRNMTSHSARVG--SLSWNSYILSSGSRSGHIHHHDVRVAEHH------VATLSGHSQEVCGLRWAPDGRHLAS  247 (420)
T ss_dssp             -----EEEEECCCSSCEE--EEEEETTEEEEEETTSEEEEEETTSSSCE------EEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             -----EEEEEeCCCCceE--EEeeCCCEEEEEeCCCceeEeeeccccee------eEEecccccceeeeeecCCCCeeee
Confidence                 1112334444444  45556789999999999999998754432      2357899999999999999999999


Q ss_pred             EECCCcEEEEecCCCee----eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeec
Q 011126          302 GGEDGTVRVWKVIEHER----LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL  377 (493)
Q Consensus       302 gs~Dg~V~iWdl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  377 (493)
                      ++.|+.|++|++.+++.    +.....+...+.++.+.+.....             .....++.|+.+.+|+.....  
T Consensus       248 ~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~-------------la~~~gs~D~~I~iwd~~t~~--  312 (420)
T 4gga_A          248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV-------------LATGGGTSDRHIRIWNVCSGA--  312 (420)
T ss_dssp             EETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTE-------------EEEEECTTTCEEEEEETTTTE--
T ss_pred             eeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccE-------------EEEEeecCCCEEEEEeCCccc--
Confidence            99999999999987653    22333333444444444433322             223356678888888876533  


Q ss_pred             ccceEEEecCCCCEeEEEEeCCC-eEEEEe--CCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeE
Q 011126          378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSS--ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKV  453 (493)
Q Consensus       378 ~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs--~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V  453 (493)
                        .+..+. +...+.++.|+|++ .+++++  .|++|+|||+.+++++..+. |.+.|++++|+| ++++|+||+.||+|
T Consensus       313 --~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tv  388 (420)
T 4gga_A          313 --CLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETL  388 (420)
T ss_dssp             --EEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEE
T ss_pred             --cceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeE
Confidence              244444 44678999999998 666554  79999999999999999987 999999999999 99999999999999


Q ss_pred             EEEeCCCCeEE
Q 011126          454 RIWEVRRCQVV  464 (493)
Q Consensus       454 ~IWdl~~~~~~  464 (493)
                      +|||+......
T Consensus       389 riWdv~~~~~~  399 (420)
T 4gga_A          389 RLWRCFELDPA  399 (420)
T ss_dssp             EEECCSCSSCC
T ss_pred             EEEECCCCCcc
Confidence            99999865443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.90  E-value=5.3e-23  Score=238.06  Aligned_cols=241  Identities=22%  Similarity=0.226  Sum_probs=197.4

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCcccccc------------------------------cccccee
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS------------------------------SLYTGQE  279 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~------------------------------~~~~~~~  279 (493)
                      .+.+|...+.+++|+|++.+|++++.||.|++|+.........                              .......
T Consensus       877 ~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  956 (1249)
T 3sfz_A          877 DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI  956 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred             ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence            3456777788899999999999999999999999753211000                              0001111


Q ss_pred             eecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeee
Q 011126          280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR  359 (493)
Q Consensus       280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (493)
                      ...+...|.+++|+|+++++++|+.||.|++|++.+++....+..+...+.++.+.+++.                ..+.
T Consensus       957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~----------------~l~s 1020 (1249)
T 3sfz_A          957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK----------------TLIS 1020 (1249)
T ss_dssp             EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS----------------CEEE
T ss_pred             EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC----------------EEEE
Confidence            223456899999999999999999999999999999998888888888888888766542                2234


Q ss_pred             cCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcc
Q 011126          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP  438 (493)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp  438 (493)
                      ++.++.+.+|+.....     ...+.+|...|.+++|+|++.+++++.|++|++||+.+++++..+. |...|++++|+|
T Consensus      1021 ~~~dg~i~vwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~ 1095 (1249)
T 3sfz_A         1021 SSEDSVIQVWNWQTGD-----YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1095 (1249)
T ss_dssp             ECSSSBEEEEETTTTE-----EECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECS
T ss_pred             EcCCCEEEEEECCCCc-----eEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECC
Confidence            5667778888765433     2235679999999999998899999999999999999999988887 999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          439 VDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       439 ~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                       ++++|++++.||+|++||+.+++.+ .+..|...|++++|+|||++|++++.|+
T Consensus      1096 -d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg 1149 (1249)
T 3sfz_A         1096 -DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1149 (1249)
T ss_dssp             -SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             -CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCC
Confidence             9999999999999999999988766 4778999999999999999999999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.90  E-value=2e-22  Score=207.08  Aligned_cols=223  Identities=20%  Similarity=0.365  Sum_probs=178.1

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      +.+|...+.+++|  ++.+|++|+.||.|++|++....       ....+.+|...|.+++|+  +.+|++|+.||.|++
T Consensus       169 ~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~v  237 (435)
T 1p22_A          169 LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE-------MLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAV  237 (435)
T ss_dssp             ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC-------EEEEECCCCSCEEEEECC--TTEEEEEETTSCEEE
T ss_pred             EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc-------EEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEE
Confidence            3445566666666  88999999999999999987553       234678899999999997  459999999999999


Q ss_pred             EecCCCeee---eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC
Q 011126          311 WKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (493)
Q Consensus       311 Wdl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (493)
                      ||+.++...   ..+..+...+.++.+                  .....+.++.++.+.+|+....    +.+..+.+|
T Consensus       238 wd~~~~~~~~~~~~~~~~~~~v~~~~~------------------~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~  295 (435)
T 1p22_A          238 WDMASPTDITLRRVLVGHRAAVNVVDF------------------DDKYIVSASGDRTIKVWNTSTC----EFVRTLNGH  295 (435)
T ss_dssp             EECSSSSCCEEEEEECCCSSCEEEEEE------------------ETTEEEEEETTSEEEEEETTTC----CEEEEEECC
T ss_pred             EeCCCCCCceeeeEecCCCCcEEEEEe------------------CCCEEEEEeCCCeEEEEECCcC----cEEEEEcCC
Confidence            999887654   233333333333332                  1123456677888888887653    457788899


Q ss_pred             CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe----
Q 011126          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----  462 (493)
Q Consensus       388 ~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~----  462 (493)
                      ...|.+++|++ .++++|+.|++|++||+++++++..+. |...|++++|   ++.+|++|+.||.|+|||+.+++    
T Consensus       296 ~~~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~  371 (435)
T 1p22_A          296 KRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRA  371 (435)
T ss_dssp             SSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTS
T ss_pred             CCcEEEEEeCC-CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccc
Confidence            99999999953 399999999999999999999999887 9999999999   56899999999999999997654    


Q ss_pred             -----EE-EecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          463 -----VV-DYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       463 -----~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                           .+ .+..|...|++++|  ++++|++++.|+
T Consensus       372 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg  405 (435)
T 1p22_A          372 PAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD  405 (435)
T ss_dssp             CTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS
T ss_pred             cccchheeeccCCCCCeEEEEe--CCCEEEEEeCCC
Confidence                 44 57889999999999  788999998775

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=8.6e-23  Score=211.91  Aligned_cols=223  Identities=8%  Similarity=0.050  Sum_probs=167.3

Q ss_pred             ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccC-----CEEEEEEccCCCEEEEEECCCcEE
Q 011126          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG-----SILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~-----~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+.+.+++|+|+|.+||+++.||.|+||+...         ....+. |..     .|.+++|||||++||+|+.||+|+
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEETTE---------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence            46778899999999999999999999999543         112334 554     599999999999999999999999


Q ss_pred             EEecCCCee-------eeeee----ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126          310 VWKVIEHER-------LDGFD----VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (493)
Q Consensus       310 iWdl~~~~~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (493)
                      |||+.++..       +..+.    .+...+.++.|++++                  .+..+.+..+.+|+...... .
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg------------------Laass~D~tVrlWd~~~~~~-~  215 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV------------------LVAALSNNSVFSMTVSASSH-Q  215 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE------------------EEEEETTCCEEEECCCSSSS-C
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc------------------EEEEeCCCeEEEEECCCCcc-c
Confidence            999988752       34442    223344555554432                  23455678888888754331 1


Q ss_pred             cceEEE-ecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcE-EEEecCCCcEEEEEE--ccCCCCEEEEEeCCCeEE
Q 011126          379 KPLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC-LRVFSHNNYVTSVAF--NPVDDNYFISGSIDGKVR  454 (493)
Q Consensus       379 ~~~~~~-~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~-~~~~~h~~~V~~v~f--sp~d~~~l~sgs~Dg~V~  454 (493)
                      ...+++ .+|...|.+++|+ +++||+++ +++|++||+..++. ...++|.+.|..|+|  +| ++..|++++.||+ +
T Consensus       216 ~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-k  291 (588)
T 2j04_A          216 PVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-K  291 (588)
T ss_dssp             CCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-E
T ss_pred             cceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-E
Confidence            123456 4788999999999 44888887 69999999998888 455589999999999  99 9999999999999 9


Q ss_pred             EEeCCCCe------EE--------Ee---------cCCCCCeEEEEEccCCCEEEEeec
Q 011126          455 IWEVRRCQ------VV--------DY---------TDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       455 IWdl~~~~------~~--------~~---------~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      +|....-+      ++        .|         ..+...|.+++|+|||+.+|+++.
T Consensus       292 lw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          292 VLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             EEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             EEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence            99974211      10        01         112234899999999999998863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.7e-21  Score=191.95  Aligned_cols=215  Identities=18%  Similarity=0.254  Sum_probs=165.9

Q ss_pred             ceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCC--------ceeeeecc
Q 011126          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLS--------QLIPIDVD  348 (493)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  348 (493)
                      ...+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..+...+.++.+.++...        .+..++..
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            3468899999999999999999999999999999999999999999888887777777664321        12222222


Q ss_pred             Ccccccee-----------------eeecCCC-----ceEEEcCCCcee-------ecccceEEEecCCC--CEeEEEEe
Q 011126          349 KEKIDKTK-----------------SLRKSSD-----LTCVVLPPKVFR-------LLEKPLHEFQGHSS--EVLDLSWS  397 (493)
Q Consensus       349 ~~~~~~~~-----------------~~~~s~~-----~~~~~~~~~~~~-------~~~~~~~~~~~h~~--~V~~l~~s  397 (493)
                      ........                 .+....+     +.+.+|+.....       ....++..+..|..  .+.+++|+
T Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (369)
T 3zwl_B          105 NGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS  184 (369)
T ss_dssp             TCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred             CCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence            21111110                 0111111     344444332211       11235566677777  99999999


Q ss_pred             CCC-eEEEEeCCCeEEEEECCC-CcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeE
Q 011126          398 KNG-FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS  474 (493)
Q Consensus       398 p~g-~l~sgs~Dg~V~lWd~~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~  474 (493)
                      |++ +|++++.|+.|++||+++ ...+..+. |...|++++|+| ++++|++++.||.|++||+++++.+....+...+.
T Consensus       185 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  263 (369)
T 3zwl_B          185 TKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLN  263 (369)
T ss_dssp             GGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeeecCCCCce
Confidence            999 999999999999999998 67777776 899999999999 99999999999999999999999887666889999


Q ss_pred             EEEEccCCCEEEEeecCC
Q 011126          475 AVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       475 sv~~spdG~~l~s~s~d~  492 (493)
                      .++|+|+++++++++.+.
T Consensus       264 ~~~~~~~~~~l~~~~~~~  281 (369)
T 3zwl_B          264 TAVITPLKEFIILGGGQE  281 (369)
T ss_dssp             EEEECSSSSEEEEEECCC
T ss_pred             eEEecCCCceEEEeecCC
Confidence            999999999999988653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.2e-22  Score=200.15  Aligned_cols=185  Identities=11%  Similarity=0.031  Sum_probs=147.0

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  320 (493)
                      ..+.+++.+|++|+.||.|++||+.......       .+.  ...|.++.|+|+   +++++.|++|++|+......+.
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~-------~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTIT-------TIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEE-------EEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEE-------EEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence            4566788999999999999999987654221       222  467888889988   9999999999999975421111


Q ss_pred             eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEEEeC-
Q 011126          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSK-  398 (493)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp-  398 (493)
                      .+                                                 ..    .+.+..+ .+|...|.+++|+| 
T Consensus       110 ~~-------------------------------------------------~~----~~~~~~~~~~~~~~v~~~~~~~~  136 (343)
T 3lrv_A          110 DS-------------------------------------------------KT----NKVLREIEVDSANEIIYMYGHNE  136 (343)
T ss_dssp             ET-------------------------------------------------TT----CCEEEEEECCCSSCEEEEECCC-
T ss_pred             ec-------------------------------------------------CC----cceeEEeecCCCCCEEEEEcCCC
Confidence            00                                                 00    0112222 36778999999999 


Q ss_pred             -CC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE--EecC-CCC
Q 011126          399 -NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTD-IRE  471 (493)
Q Consensus       399 -~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~--~~~~-~~~  471 (493)
                       ++ +|++++.|++|++||+++++++..+.  |...|++++|+| ++.+|++|+.||.|+|||+++++.+  .+.. |..
T Consensus       137 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~  215 (343)
T 3lrv_A          137 VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA  215 (343)
T ss_dssp             --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC
Confidence             88 99999999999999999999977663  566899999999 9999999999999999999998765  5666 899


Q ss_pred             CeEEEEEccCCCEEEEeecC
Q 011126          472 IVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       472 ~I~sv~~spdG~~l~s~s~d  491 (493)
                      .|++++|+|+|++|++++.+
T Consensus       216 ~v~~l~fs~~g~~l~s~~~~  235 (343)
T 3lrv_A          216 KIKEVKFADNGYWMVVECDQ  235 (343)
T ss_dssp             CEEEEEECTTSSEEEEEESS
T ss_pred             CEEEEEEeCCCCEEEEEeCC
Confidence            99999999999999999844

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.88  E-value=1.1e-21  Score=197.90  Aligned_cols=210  Identities=14%  Similarity=0.132  Sum_probs=160.1

Q ss_pred             eeeecccccceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC---CCEEEEEECCCc
Q 011126          232 ARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGGEDGT  307 (493)
Q Consensus       232 ~~~~~~~~~~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~Dg~  307 (493)
                      ..|...+.+++|+| ++.+|++++.||.|++|++......       .. ..|...+.++.|+|.   +.+|++++.||.
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA-------DV-FNFEETVYSHHMSPVSTKHCLVAVGTRGPK  167 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE-------EE-EECSSCEEEEEECSSCSSCCEEEEEESSSS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc-------ee-ccCCCceeeeEeecCCCCCcEEEEEcCCCe
Confidence            34667788899999 7789999999999999998854421       12 237888999999984   459999999999


Q ss_pred             EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee-----------
Q 011126          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL-----------  376 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-----------  376 (493)
                      |++||+.+++.+..+..+...+.++.+.+.....               .+.++.++.+.+|+.+....           
T Consensus       168 v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---------------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  232 (408)
T 4a11_B          168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYI---------------LATASADSRVKLWDVRRASGCLITLDQHNGK  232 (408)
T ss_dssp             EEEEESSSSCCCEEECCCCSCEEEEEECSSCTTE---------------EEEEETTSCEEEEETTCSSCCSEECCTTTTC
T ss_pred             EEEEeCCCcceeeeecCCCCcEEEEEECCCCCcE---------------EEEEcCCCcEEEEECCCCCcccccccccccc
Confidence            9999999998888888777777777776655322               22345566677776543220           


Q ss_pred             -cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc----------------------------------
Q 011126          377 -LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR----------------------------------  420 (493)
Q Consensus       377 -~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~----------------------------------  420 (493)
                       .......+.+|...|.+++|+|++ +|++++.|+.|++||+.+++                                  
T Consensus       233 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
T 4a11_B          233 KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY  312 (408)
T ss_dssp             SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE
T ss_pred             cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec
Confidence             111122236799999999999999 99999999999999987543                                  


Q ss_pred             -------------EEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126          421 -------------CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       421 -------------~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                                   ++..+. |...|++++|+| ++++|++|+.||.|++||+.+++.+.
T Consensus       313 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~  370 (408)
T 4a11_B          313 GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVP  370 (408)
T ss_dssp             TTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC-----
T ss_pred             CCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccC
Confidence                         334444 889999999999 99999999999999999999988764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.88  E-value=1.1e-20  Score=193.22  Aligned_cols=236  Identities=10%  Similarity=0.065  Sum_probs=178.5

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCCcEEEE
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVW  311 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~V~iW  311 (493)
                      .|...+.+++|+|++.++++++.++.|++|+.....       ....+..|...+.+++|+|++++|+++ +.|+.|++|
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~  239 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA-------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI  239 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC-------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce-------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence            445566778999999999999999999999987543       223466789999999999999988554 479999999


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      |+.+++.+..+.... .+..+.+.+++. .++..........       ..++.+.+|+......     .....|...+
T Consensus       240 d~~~~~~~~~~~~~~-~~~~~~~~~~g~-~l~~~~~~~~~~~-------~~dg~i~~~d~~~~~~-----~~~~~~~~~~  305 (433)
T 3bws_A          240 DRKTKLEIRKTDKIG-LPRGLLLSKDGK-ELYIAQFSASNQE-------SGGGRLGIYSMDKEKL-----IDTIGPPGNK  305 (433)
T ss_dssp             ETTTTEEEEECCCCS-EEEEEEECTTSS-EEEEEEEESCTTC-------SCCEEEEEEETTTTEE-----EEEEEEEECE
T ss_pred             ECCCCcEEEEecCCC-CceEEEEcCCCC-EEEEEECCCCccc-------cCCCeEEEEECCCCcE-----EeeccCCCCc
Confidence            999998877665432 233444433322 1222111111100       2466777777654322     2223456688


Q ss_pred             eEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC---------------CCeEE
Q 011126          392 LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---------------DGKVR  454 (493)
Q Consensus       392 ~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---------------Dg~V~  454 (493)
                      .+++|+|++  ++++++.|+.|++||+.+++.+..+.+...+.+++|+| ++++|++++.               ||.|+
T Consensus       306 ~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~  384 (433)
T 3bws_A          306 RHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVY  384 (433)
T ss_dssp             EEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred             ceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEE
Confidence            999999998  55777999999999999999999999999999999999 9998888876               57999


Q ss_pred             EEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       455 IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      +||+.+++++........+.+++|+|+|++|++++.
T Consensus       385 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  420 (433)
T 3bws_A          385 VIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDF  420 (433)
T ss_dssp             EEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEET
T ss_pred             EEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEEC
Confidence            999999998865555678999999999999988765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.88  E-value=4.8e-21  Score=195.80  Aligned_cols=231  Identities=11%  Similarity=0.091  Sum_probs=181.2

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      .+.+++|+|++.++++++.++.|++|+.......  .......+.+|.+.|++++|+|+++++++++.|+.|++||+.++
T Consensus       124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~  201 (433)
T 3bws_A          124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV--RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL  201 (433)
T ss_dssp             CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE--EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred             CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe--eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence            3446899998888888999999999998865432  11112235689999999999999999999999999999999999


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (493)
                      +.+..+..+...+.++.+.++...               ..+....++.+.+|+.....    .+..+.. ...+.+++|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~i~~~d~~~~~----~~~~~~~-~~~~~~~~~  261 (433)
T 3bws_A          202 AYKATVDLTGKWSKILLYDPIRDL---------------VYCSNWISEDISVIDRKTKL----EIRKTDK-IGLPRGLLL  261 (433)
T ss_dssp             CEEEEEECSSSSEEEEEEETTTTE---------------EEEEETTTTEEEEEETTTTE----EEEECCC-CSEEEEEEE
T ss_pred             eEEEEEcCCCCCeeEEEEcCCCCE---------------EEEEecCCCcEEEEECCCCc----EEEEecC-CCCceEEEE
Confidence            888888766666666666554321               11233345667777765332    2334443 345999999


Q ss_pred             eCCC-eEEEEe--------CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCC-EEEEEeCCCeEEEEeCCCCeEEEe
Q 011126          397 SKNG-FLLSSS--------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQVVDY  466 (493)
Q Consensus       397 sp~g-~l~sgs--------~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~-~l~sgs~Dg~V~IWdl~~~~~~~~  466 (493)
                      +|++ +|++++        .|+.|++||+.+++.+..+.|...+.+++|+| +++ ++++++.|+.|++||+.+++++..
T Consensus       262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~~~~~~  340 (433)
T 3bws_A          262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKEKKVQKS  340 (433)
T ss_dssp             CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECS-STTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECC-CCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence            9999 787777        58899999999999988888888999999999 776 557778999999999999988876


Q ss_pred             cCCCCCeEEEEEccCCCEEEEeec
Q 011126          467 TDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       467 ~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ..+...+.+++|+|+|+++++++.
T Consensus       341 ~~~~~~~~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          341 IPVFDKPNTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             EECSSSEEEEEECTTSSEEEEEEC
T ss_pred             ecCCCCCCeEEEcCCCCEEEEEec
Confidence            668888999999999999888775

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.88  E-value=1.1e-21  Score=194.80  Aligned_cols=217  Identities=12%  Similarity=0.126  Sum_probs=161.1

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEE--ccCCCEEEEEECCCcE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF--SLDGQYLASGGEDGTV  308 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f--spdg~~Lasgs~Dg~V  308 (493)
                      +..|...+.+++|+|++++|++++.||.|++|++......        .+.+|...|++++|  +|++++|++++.||.|
T Consensus        82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i  153 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI--------QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL  153 (368)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--------EEEECSSCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred             eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce--------eeccccCceEEEEEEeCCCCCEEEEccCCCcE
Confidence            4556778888999999999999999999999999855421        25679999999999  8899999999999999


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEe------eCCCCceeeeeccCcc------------------------ccceeee
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFT------INHLSQLIPIDVDKEK------------------------IDKTKSL  358 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~------------------------~~~~~~~  358 (493)
                      ++||+.+++.+..+..+.. ..++.+.      ......+..+......                        ......+
T Consensus       154 ~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (368)
T 3mmy_A          154 KFWDTRSSNPMMVLQLPER-CYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFA  232 (368)
T ss_dssp             EEECSSCSSCSEEEECSSC-EEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEE
T ss_pred             EEEECCCCcEEEEEecCCC-ceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEE
Confidence            9999999988777765542 1111111      0011111111111100                        0011155


Q ss_pred             ecCCCceEEEcCCCceeecccceEEEecCCC------------CEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe
Q 011126          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS------------EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF  425 (493)
Q Consensus       359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~  425 (493)
                      .++.++.+.+|+...... ...+..+.+|..            .|++++|+|++ +|++++.|+.|+|||+.+++++..+
T Consensus       233 ~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          233 LGSIEGRVAIHYINPPNP-AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             EEETTSEEEEEESSCSCH-HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             EecCCCcEEEEecCCCCc-cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence            667777888887654321 134566677765            79999999999 9999999999999999999999888


Q ss_pred             c-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126          426 S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       426 ~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl  458 (493)
                      . |...|++++|+| ++.+|++++.|+..+.|++
T Consensus       312 ~~~~~~v~~~~~s~-~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          312 EQLDQPISACCFNH-NGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             CCCSSCEEEEEECT-TSSCEEEEECCCSTTCGGG
T ss_pred             cCCCCCceEEEECC-CCCeEEEEecccccccccc
Confidence            6 899999999999 9999999999876555443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.4e-22  Score=221.19  Aligned_cols=222  Identities=15%  Similarity=0.134  Sum_probs=166.4

Q ss_pred             ceeeeecccccceeccC--CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC--CCEEEEEECC
Q 011126          230 AMARIIDRHGSATLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGED  305 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~--g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~D  305 (493)
                      .+.+|...+.+++|+|+  +.+|++|+.||.|++|++.....     .....+.+|...|++++|+|+  +++|++|+.|
T Consensus        48 ~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~-----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d  122 (753)
T 3jro_A           48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-----SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  122 (753)
T ss_dssp             EECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE-----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             eccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc-----cccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence            45567788888999988  99999999999999999875431     123456789999999999999  9999999999


Q ss_pred             CcEEEEecCCCee--eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126          306 GTVRVWKVIEHER--LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (493)
Q Consensus       306 g~V~iWdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (493)
                      |.|++||+.++..  ...+..+...+.++.+.+........   ..........+.++.++.+.+|+.+.......+...
T Consensus       123 g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~---~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~  199 (753)
T 3jro_A          123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE---HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST  199 (753)
T ss_dssp             SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred             CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccc---cccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence            9999999987743  23334444455555554431100000   000011234456677888888876543333345677


Q ss_pred             EecCCCCEeEEEEeCC---C-eEEEEeCCCeEEEEECCCCcE------EEEecCCCcEEEEEEccCCCCEEEEEeCCCeE
Q 011126          384 FQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQVGIDRC------LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKV  453 (493)
Q Consensus       384 ~~~h~~~V~~l~~sp~---g-~l~sgs~Dg~V~lWd~~~~~~------~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V  453 (493)
                      +.+|...|++++|+|+   + +|++++.|++|++||+.++..      .....|...|++++|+| ++++|++|+.||.|
T Consensus       200 ~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I  278 (753)
T 3jro_A          200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKV  278 (753)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCE
T ss_pred             ecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEE
Confidence            8899999999999999   8 999999999999999988631      12223889999999999 99999999999999


Q ss_pred             EEEeCCC
Q 011126          454 RIWEVRR  460 (493)
Q Consensus       454 ~IWdl~~  460 (493)
                      +||++..
T Consensus       279 ~vwd~~~  285 (753)
T 3jro_A          279 TLWKENL  285 (753)
T ss_dssp             ECCBCCS
T ss_pred             EEEecCC
Confidence            9999974

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.87  E-value=1.2e-19  Score=182.68  Aligned_cols=223  Identities=11%  Similarity=0.093  Sum_probs=168.8

Q ss_pred             ccccceeccCCCeE-EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEEEEecC
Q 011126          237 RHGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVI  314 (493)
Q Consensus       237 ~~~~~~fsp~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~iWdl~  314 (493)
                      .+.+++|+|+++++ ++++.++.|++||......       .+.+..|. .|.+++|+|++++|+.++ .|+.|++||+.
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~  104 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTT  104 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-------EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECC
Confidence            35679999999977 6777999999999875432       22344444 899999999999886554 67999999999


Q ss_pred             CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEE
Q 011126          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (493)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  394 (493)
                      +++.+..+..+. .+..+.+.+++.               ...+....++.+.+|+.....    .+..+..| ..+.++
T Consensus       105 ~~~~~~~~~~~~-~~~~~~~s~dg~---------------~l~~~~~~~~~v~~~d~~~~~----~~~~~~~~-~~~~~~  163 (391)
T 1l0q_A          105 SNTVAGTVKTGK-SPLGLALSPDGK---------------KLYVTNNGDKTVSVINTVTKA----VINTVSVG-RSPKGI  163 (391)
T ss_dssp             TTEEEEEEECSS-SEEEEEECTTSS---------------EEEEEETTTTEEEEEETTTTE----EEEEEECC-SSEEEE
T ss_pred             CCeEEEEEeCCC-CcceEEECCCCC---------------EEEEEeCCCCEEEEEECCCCc----EEEEEecC-CCcceE
Confidence            998877766443 233444433321               111234556677777765432    34445544 567999


Q ss_pred             EEeCCC-eE-EEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe---CCCeEEEEeCCCCeEEEecCC
Q 011126          395 SWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQVVDYTDI  469 (493)
Q Consensus       395 ~~sp~g-~l-~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs---~Dg~V~IWdl~~~~~~~~~~~  469 (493)
                      +|+|++ +| ++++.++.|++||+.+++++..+.+...+.+++|+| ++++|++++   .++.|++||+.+++.+.....
T Consensus       164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~  242 (391)
T 1l0q_A          164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV  242 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence            999999 55 678889999999999999999998889999999999 999888888   689999999999988765444


Q ss_pred             CCCeEEEEEccCCCEEEEee
Q 011126          470 REIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       470 ~~~I~sv~~spdG~~l~s~s  489 (493)
                      ...+.+++|+|+|++|++++
T Consensus       243 ~~~~~~~~~s~dg~~l~~s~  262 (391)
T 1l0q_A          243 GPDPAGIAVTPDGKKVYVAL  262 (391)
T ss_dssp             CSSEEEEEECTTSSEEEEEE
T ss_pred             CCCccEEEEccCCCEEEEEc
Confidence            55689999999999885554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.86  E-value=1.6e-19  Score=181.89  Aligned_cols=213  Identities=13%  Similarity=0.147  Sum_probs=165.2

Q ss_pred             CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE-EEEECCCcEEEEecCCCeeeeeeeccC
Q 011126          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQD  326 (493)
Q Consensus       248 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~~~~~~~~~~~~~  326 (493)
                      .++++++.++.|++|++.....       .+.+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~-------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~   74 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKV-------TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS   74 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEEcCCCCEEEEEECCCCeE-------EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence            4678899999999999875432       22455554 58999999999977 667799999999999999888776654


Q ss_pred             CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE-EE
Q 011126          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LS  404 (493)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l-~s  404 (493)
                       .+..+.+.+++..               ..+....++.+.+|+.....    .+..+. +...+.+++|+|++ +| ++
T Consensus        75 -~v~~~~~spdg~~---------------l~~~~~~~~~v~v~d~~~~~----~~~~~~-~~~~~~~~~~s~dg~~l~~~  133 (391)
T 1l0q_A           75 -SPQGVAVSPDGKQ---------------VYVTNMASSTLSVIDTTSNT----VAGTVK-TGKSPLGLALSPDGKKLYVT  133 (391)
T ss_dssp             -SEEEEEECTTSSE---------------EEEEETTTTEEEEEETTTTE----EEEEEE-CSSSEEEEEECTTSSEEEEE
T ss_pred             -CccceEECCCCCE---------------EEEEECCCCEEEEEECCCCe----EEEEEe-CCCCcceEEECCCCCEEEEE
Confidence             4445555443321               11233445667777665432    234444 34578999999998 55 78


Q ss_pred             EeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEE-EEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCC
Q 011126          405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK  483 (493)
Q Consensus       405 gs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l-~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~  483 (493)
                      ++.|+.|++||+.+++.+..+.+...+.+++|+| ++++| ++++.|+.|++||+++++.+....+...+.+++|+|+|+
T Consensus       134 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~  212 (391)
T 1l0q_A          134 NNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGT  212 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSS
T ss_pred             eCCCCEEEEEECCCCcEEEEEecCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCC
Confidence            8889999999999999999988777889999999 88877 677889999999999999887766778899999999999


Q ss_pred             EEEEeec
Q 011126          484 VRQNSAC  490 (493)
Q Consensus       484 ~l~s~s~  490 (493)
                      +|++++.
T Consensus       213 ~l~~~~~  219 (391)
T 1l0q_A          213 KAYVTNV  219 (391)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9988873

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.86  E-value=1.3e-20  Score=184.33  Aligned_cols=161  Identities=11%  Similarity=0.107  Sum_probs=121.1

Q ss_pred             eeeeecccccceecc---CCCeEEeeecCCeEEEEECCCccccccccccceeeeccc---CCEEEEEEccCCCEE-----
Q 011126          231 MARIIDRHGSATLKP---GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE---GSILTMKFSLDGQYL-----  299 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp---~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~---~~I~~l~fspdg~~L-----  299 (493)
                      +..|...+..++|+|   ++.+||+|+.|++|+|||+.+.+       ..+++.+|.   ..|.+++|+|+|.++     
T Consensus       174 ~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~  246 (356)
T 2w18_A          174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSH  246 (356)
T ss_dssp             EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-------EEEEEECCC---CCCEEEEEEETTEEEEEEC-
T ss_pred             eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-------EEEEEcCCCcceeeeEEEEECCCCCEEEEecc
Confidence            445666677789999   77999999999999999998654       223455543   468888999999876     


Q ss_pred             -------EEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCC
Q 011126          300 -------ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK  372 (493)
Q Consensus       300 -------asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  372 (493)
                             ++|+.|++|++||..+++.+..+...                                               
T Consensus       247 ~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~-----------------------------------------------  279 (356)
T 2w18_A          247 PCAKESESLRSPVFQLIVINPKTTLSVGVMLYC-----------------------------------------------  279 (356)
T ss_dssp             -----------CCEEEEEEETTTTEEEEEEEEC-----------------------------------------------
T ss_pred             CCCcceeeccCCCcEEEEEECCCCEEEEEEEee-----------------------------------------------
Confidence                   56888999999999888765322100                                               


Q ss_pred             ceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEE-EEEEccCCCCEEEEEeC
Q 011126          373 VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT-SVAFNPVDDNYFISGSI  449 (493)
Q Consensus       373 ~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~-~v~fsp~d~~~l~sgs~  449 (493)
                                ...+|...+.+..++  + ++++++.|++|+|||+.+++++.++. |...+. +++|+| ++++|++|+.
T Consensus       280 ----------~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~  346 (356)
T 2w18_A          280 ----------LPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG-TDSHLLAGQK  346 (356)
T ss_dssp             ----------CCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS-SSSEEEEECT
T ss_pred             ----------ccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC-CCCEEEEEEC
Confidence                      012455555444454  5 89999999999999999999999996 766555 689999 9999999999


Q ss_pred             CCeEEEEeC
Q 011126          450 DGKVRIWEV  458 (493)
Q Consensus       450 Dg~V~IWdl  458 (493)
                      |++|+|||+
T Consensus       347 D~TIklWd~  355 (356)
T 2w18_A          347 DGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEEE
T ss_pred             CCcEEEecC
Confidence            999999995

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.85  E-value=5.3e-20  Score=184.14  Aligned_cols=189  Identities=12%  Similarity=0.128  Sum_probs=125.3

Q ss_pred             eeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeee
Q 011126          279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL  358 (493)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (493)
                      ++.+|...|++++|+|||++|++|+.++ ++||++.+++........  ....+.+.+...               ...+
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~---------------~~~~   75 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTN---------------YVAF   75 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSS---------------EEEE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCC---------------EEEE
Confidence            4578999999999999999999998775 789999887765544332  233333322211               1111


Q ss_pred             ecCCCceEEEcCCCceeecccceEEEecCCCCEeE-------------------------------------EEEeCCCe
Q 011126          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD-------------------------------------LSWSKNGF  401 (493)
Q Consensus       359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-------------------------------------l~~sp~g~  401 (493)
                      .++.+..+.+|+.....    ++..+. |...|.+                                     +++++ ++
T Consensus        76 ~~~~d~~v~iWd~~~~~----~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~-~~  149 (355)
T 3vu4_A           76 VTGVKEVVHIWDDVKKQ----DVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN-GL  149 (355)
T ss_dssp             ECSSTTEEEEEETTTTE----EEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET-TE
T ss_pred             EECCccEEEEEECCCCc----EEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc-cE
Confidence            22223344444332211    111111 2223333                                     34444 43


Q ss_pred             EEE--EeCCCeEEEEECCCCc----------------EEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCe-EEEEeCCCC
Q 011126          402 LLS--SSADKTVRLWQVGIDR----------------CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRC  461 (493)
Q Consensus       402 l~s--gs~Dg~V~lWd~~~~~----------------~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~-V~IWdl~~~  461 (493)
                      ++.  |+.||+|++||+.++.                ++..+ .|...|++++|+| ++++|++|+.||+ |+|||++++
T Consensus       150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~  228 (355)
T 3vu4_A          150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDG  228 (355)
T ss_dssp             EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTC
T ss_pred             EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCC
Confidence            333  5789999999998765                14445 4999999999999 9999999999998 999999999


Q ss_pred             eEEE-ec-C-CCCCeEEEEEccCCCEEEEeecCC
Q 011126          462 QVVD-YT-D-IREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       462 ~~~~-~~-~-~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +.+. +. + |...|++++|+|||++|++++.|+
T Consensus       229 ~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~  262 (355)
T 3vu4_A          229 VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW  262 (355)
T ss_dssp             CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC
T ss_pred             cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC
Confidence            8775 44 4 899999999999999999999875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.85  E-value=2e-20  Score=184.39  Aligned_cols=189  Identities=12%  Similarity=0.043  Sum_probs=153.9

Q ss_pred             eecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe---eeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126          280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE---RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (493)
Q Consensus       280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (493)
                      ..+|.+.|++++|+|++++|++++.||.|+||++.++.   ....+..+...+.++.+.++...               .
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------------~   71 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL---------------Q   71 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE---------------E
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc---------------E
Confidence            35799999999999999999999999999999998776   23444455556666666654310               2


Q ss_pred             eeecCCCceEEEcCC-CceeecccceEEEec--CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC---------CcEEE
Q 011126          357 SLRKSSDLTCVVLPP-KVFRLLEKPLHEFQG--HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---------DRCLR  423 (493)
Q Consensus       357 ~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~--h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~---------~~~~~  423 (493)
                      .+.++.++.+.+|+. ...     ....+.+  |...|.+++|+| + +|++++.|+.|++||+++         ++++.
T Consensus        72 l~~~~~dg~i~~wd~~~~~-----~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  145 (342)
T 1yfq_A           72 IYVGTVQGEILKVDLIGSP-----SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN  145 (342)
T ss_dssp             EEEEETTSCEEEECSSSSS-----SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred             EEEEcCCCeEEEEEeccCC-----ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence            234456677888876 543     2466778  999999999999 7 999999999999999998         88888


Q ss_pred             EecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC-CeE---EEecCCCCCeEEEEEcc-CCCEEEEeecCC
Q 011126          424 VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQV---VDYTDIREIVSAVCYCP-DGKVRQNSACNF  492 (493)
Q Consensus       424 ~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~-~~~---~~~~~~~~~I~sv~~sp-dG~~l~s~s~d~  492 (493)
                      .+.|...|++++|+| ++  |++++.|+.|++||+++ +..   .....+...|++++|+| +++++++++.++
T Consensus       146 ~~~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg  216 (342)
T 1yfq_A          146 NTKVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG  216 (342)
T ss_dssp             SSSSCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred             EEeeCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence            888999999999998 55  99999999999999998 432   24567888999999999 999999998764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.85  E-value=7.6e-21  Score=193.00  Aligned_cols=218  Identities=8%  Similarity=0.005  Sum_probs=139.4

Q ss_pred             Cceeeeecccccceecc--------CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC-EE
Q 011126          229 GAMARIIDRHGSATLKP--------GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YL  299 (493)
Q Consensus       229 ~~~~~~~~~~~~~~fsp--------~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~L  299 (493)
                      ..+.+|.+.|.+++|+|        ++++||+|+.|++|+|||+.....       ...+.+|...|.+++|+|++. +|
T Consensus       130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~-------~~~~~~~~~~v~~v~~~p~~~~~l  202 (393)
T 4gq1_A          130 GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP-------ILAGYPLSSPGISVQFRPSNPNQL  202 (393)
T ss_dssp             CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE-------EEEEEECSSCEEEEEEETTEEEEE
T ss_pred             cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce-------eeeecCCCCCcEEEEECCCCCceE
Confidence            45677889999999998        899999999999999999864432       224567999999999999874 89


Q ss_pred             EEEECCCcEEEEecCCCeeeeeeeccCCCCc--eEEEee----------CCCCceeeeeccCccccceeeeecCCCceEE
Q 011126          300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPS--CLYFTI----------NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV  367 (493)
Q Consensus       300 asgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  367 (493)
                      ++|+.|++|++||+.+++.............  +.....          .+...+..+.+..  ......+..+.+..+.
T Consensus       203 ~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~--~dg~~l~s~s~d~~i~  280 (393)
T 4gq1_A          203 IVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG--SDGSGILAMCKSGAWL  280 (393)
T ss_dssp             EEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEET--TTTCEEEEECTTSEEE
T ss_pred             EecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeec--CCCCEEEEEeCCCCEE
Confidence            9999999999999998876544433222111  111111          1111111111110  1122345566777788


Q ss_pred             EcCCCceeecc--------------c-ceEEEecCCCCEeEEEEeCC--C-eEEEEeCCCeEEEEECCCCcEEEEe-cCC
Q 011126          368 VLPPKVFRLLE--------------K-PLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVF-SHN  428 (493)
Q Consensus       368 ~~~~~~~~~~~--------------~-~~~~~~~h~~~V~~l~~sp~--g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~  428 (493)
                      +|+........              . .......+... ....|+|.  + ++++|+.|++|+|||+.++.++..+ .|.
T Consensus       281 vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~  359 (393)
T 4gq1_A          281 RWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSL-LGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG  359 (393)
T ss_dssp             EEEC-------------------CCSCSEEEECSSCCS-SCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred             EEECccCCCCceEeeecCccccEEEccccccccccCcc-eeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence            87664322110              0 11112222222 23344443  3 6778889999999999998877665 488


Q ss_pred             CcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126          429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       429 ~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl  458 (493)
                      ..|++++|+| ++++||+++.+| +.+|.+
T Consensus       360 ~~V~svafsp-dG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          360 MPIVDFCWHQ-DGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             SCEEEEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred             CcEEEEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence            9999999999 999999999776 666654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=3.5e-20  Score=190.73  Aligned_cols=199  Identities=14%  Similarity=0.084  Sum_probs=145.0

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCcccc---------ccccccceeeecccCCEEEEEEccCCCEEE----EEE
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE---------LSSLYTGQEFLAHEGSILTMKFSLDGQYLA----SGG  303 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~---------~~~~~~~~~l~~H~~~I~~l~fspdg~~La----sgs  303 (493)
                      ..+.+++++++.++++++.++ |+||+.......         ...... .....|...|++++|+|+|++|+    +|+
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQ-GLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCC-CEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCc-cccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            456689999999999999888 899875422110         000011 11234677899999999999999    788


Q ss_pred             CCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126          304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (493)
Q Consensus       304 ~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (493)
                      .|++|+|||+.++...     .......                                              ...+..
T Consensus       116 ~d~~v~iwd~~~~~~~-----~~~~~~~----------------------------------------------~~~~~~  144 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNE-----AKQQKRP----------------------------------------------FAYHKL  144 (434)
T ss_dssp             TEEEEEEEEHHHHHCT-----TCSSCCC----------------------------------------------SEEEEC
T ss_pred             CCceEEEEEccccccC-----CcCCcce----------------------------------------------eeeeec
Confidence            9999999998653100     0000000                                              001233


Q ss_pred             EecCCCCEeEEEEeCC-C-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          384 FQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       384 ~~~h~~~V~~l~~sp~-g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      +.+|...|.+++|+|+ + +|++++.|++|+|||++++..+... .|...|++++|+| ++++|++|+.||+|++||++.
T Consensus       145 ~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~  223 (434)
T 2oit_A          145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL  223 (434)
T ss_dssp             CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC
T ss_pred             cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC
Confidence            5679999999999998 5 9999999999999999988665443 4889999999999 899999999999999999983


Q ss_pred             CeEEEecC-------CCCCeEEEEEccCCCEEEEee
Q 011126          461 CQVVDYTD-------IREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       461 ~~~~~~~~-------~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .....+..       |...|.+++|++++.++++.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~  259 (434)
T 2oit_A          224 QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA  259 (434)
T ss_dssp             CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred             cccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence            22222222       233799999999998886544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.83  E-value=9.1e-19  Score=179.09  Aligned_cols=190  Identities=13%  Similarity=0.103  Sum_probs=152.2

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCC---eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECC
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMR---RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGED  305 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg---~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~D  305 (493)
                      .+..+...+.+++|+|+|++|++++.++   .|++||+.....        ..+..|.+.+.+++|+|||++|+ +++.|
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--------~~l~~~~~~~~~~~~spdg~~la~~~~~~  244 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------RQVASFPRHNGAPAFSPDGSKLAFALSKT  244 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--------EEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--------EEeecCCCcccCEEEcCCCCEEEEEEecC
Confidence            3555667778899999999999998875   999999976542        13567888999999999999887 66666


Q ss_pred             Cc--EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126          306 GT--VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (493)
Q Consensus       306 g~--V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (493)
                      +.  |++||+.+++.                                                               ..
T Consensus       245 g~~~i~~~d~~~~~~---------------------------------------------------------------~~  261 (415)
T 2hqs_A          245 GSLNLYVMDLASGQI---------------------------------------------------------------RQ  261 (415)
T ss_dssp             SSCEEEEEETTTCCE---------------------------------------------------------------EE
T ss_pred             CCceEEEEECCCCCE---------------------------------------------------------------Ee
Confidence            65  88999876542                                                               22


Q ss_pred             EecCCCCEeEEEEeCCC-eEEEEeC-CC--eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC---CeEEEE
Q 011126          384 FQGHSSEVLDLSWSKNG-FLLSSSA-DK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIW  456 (493)
Q Consensus       384 ~~~h~~~V~~l~~sp~g-~l~sgs~-Dg--~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D---g~V~IW  456 (493)
                      +..|...+.+++|+|+| +|+.++. ++  .|.+||+.+++......+...+.+++|+| ++++|++++.+   ..|++|
T Consensus       262 l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~  340 (415)
T 2hqs_A          262 VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQ  340 (415)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEE
T ss_pred             CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECC-CCCEEEEEECcCCceEEEEE
Confidence            34567788999999999 7777775 44  68888998887655445778999999999 99999988865   589999


Q ss_pred             eCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          457 EVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       457 dl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      |+.+++...+..+. .+.+++|+|||++|++++.+.
T Consensus       341 d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          341 DLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             ETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEET
T ss_pred             ECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCC
Confidence            99999887766664 899999999999998887653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.79  E-value=1.1e-17  Score=171.17  Aligned_cols=173  Identities=13%  Similarity=0.057  Sum_probs=139.8

Q ss_pred             CCeEEeeecC------CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC---cEEEEecCCCe
Q 011126          247 DHELTLGQRM------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG---TVRVWKVIEHE  317 (493)
Q Consensus       247 g~~lasgs~d------g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg---~V~iWdl~~~~  317 (493)
                      +..++.++.+      +.|++||+....        .+.+.+|...|.+++|+|||++|++++.++   .|++||+.+++
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~  214 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA  214 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS--------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC--------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence            5566665554      799999986422        235678999999999999999999999885   99999998765


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (493)
                      ..                                                               .+..|...+.+++|+
T Consensus       215 ~~---------------------------------------------------------------~l~~~~~~~~~~~~s  231 (415)
T 2hqs_A          215 VR---------------------------------------------------------------QVASFPRHNGAPAFS  231 (415)
T ss_dssp             EE---------------------------------------------------------------EEECCSSCEEEEEEC
T ss_pred             EE---------------------------------------------------------------EeecCCCcccCEEEc
Confidence            31                                                               233466789999999


Q ss_pred             CCC-eEE-EEeCCCe--EEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC-CC--eEEEEeCCCCeEEEecCCC
Q 011126          398 KNG-FLL-SSSADKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIR  470 (493)
Q Consensus       398 p~g-~l~-sgs~Dg~--V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-Dg--~V~IWdl~~~~~~~~~~~~  470 (493)
                      |+| +|+ +++.++.  |++||+.++++.....|...+.+++|+| ++++|++++. ++  .|++||+.+++...+..+.
T Consensus       232 pdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~  310 (415)
T 2hqs_A          232 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG  310 (415)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS
T ss_pred             CCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEecCC
Confidence            999 666 6766654  9999999988766556888999999999 9999998886 44  7888899998877777777


Q ss_pred             CCeEEEEEccCCCEEEEeecC
Q 011126          471 EIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       471 ~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ..+.+++|+|||++|++++.+
T Consensus       311 ~~~~~~~~spdG~~l~~~~~~  331 (415)
T 2hqs_A          311 SQNQDADVSSDGKFMVMVSSN  331 (415)
T ss_dssp             SEEEEEEECTTSSEEEEEEEC
T ss_pred             CcccCeEECCCCCEEEEEECc
Confidence            889999999999999988754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=6.9e-18  Score=173.59  Aligned_cols=192  Identities=16%  Similarity=0.161  Sum_probs=141.1

Q ss_pred             ecccccceeccCCCeEE----eeecCCeEEEEECCCcc----ccccccccceeeecccCCEEEEEEccC-CCEEEEEECC
Q 011126          235 IDRHGSATLKPGDHELT----LGQRMRRVRVHPVKKQS----RELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGED  305 (493)
Q Consensus       235 ~~~~~~~~fsp~g~~la----sgs~dg~V~vwd~~~~~----~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~D  305 (493)
                      ...+.+++|+|+|++||    +|+.|+.|+|||+....    .....+.....+.+|...|++++|+|+ +.+|++++.|
T Consensus        92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D  171 (434)
T 2oit_A           92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD  171 (434)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred             CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence            34577799999999999    78999999999986531    011122223456789999999999997 8899999999


Q ss_pred             CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      |+|++||+.++..                                                              +....
T Consensus       172 g~v~iwD~~~~~~--------------------------------------------------------------~~~~~  189 (434)
T 2oit_A          172 GSIAVLQVTETVK--------------------------------------------------------------VCATL  189 (434)
T ss_dssp             SCEEEEEESSSEE--------------------------------------------------------------EEEEE
T ss_pred             CeEEEEEcCCCcc--------------------------------------------------------------eeecc
Confidence            9999999976532                                                              11234


Q ss_pred             cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--------CCCcEEEEEEccCCCCEEEE-EeCCCe---
Q 011126          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFIS-GSIDGK---  452 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~s-gs~Dg~---  452 (493)
                      +|...|++++|+|+| +|++|+.|++|++||++ +.....+.        |...|.+++|++ ++.++++ ...||.   
T Consensus       190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~  267 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLET  267 (434)
T ss_dssp             CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSSS
T ss_pred             CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec-CceEEEEEccCCCccCC
Confidence            578899999999999 99999999999999998 55555443        223899999999 7777654 344543   


Q ss_pred             ---EEEEeCCCCe-----E-EEec-------CCCCCeEEEEEccCCCEEEEeec
Q 011126          453 ---VRIWEVRRCQ-----V-VDYT-------DIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       453 ---V~IWdl~~~~-----~-~~~~-------~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                         +++|++++.+     . ..+.       ..+.+-..+.+-++.+++++++.
T Consensus       268 ~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~  321 (434)
T 2oit_A          268 SPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA  321 (434)
T ss_dssp             CCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET
T ss_pred             CCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC
Confidence               9999998652     1 2222       22233344556688888887765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.79  E-value=4.4e-18  Score=162.96  Aligned_cols=231  Identities=12%  Similarity=0.031  Sum_probs=155.3

Q ss_pred             eeeecccccceeccCCCeEEeeecCCeEEEEECCC-ccccccccccceeeecc-cCCEEEEEEccCCCEEEEEE--CCCc
Q 011126          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-QSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGG--EDGT  307 (493)
Q Consensus       232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~-~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~Lasgs--~Dg~  307 (493)
                      ..+...+.+++|+|+|++|++++ ++.|++|++.. ....       ..+..| ...|.+++|+|+|++|++++  .++.
T Consensus        38 ~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  109 (297)
T 2ojh_A           38 WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-------KVDTGFATICNNDHGISPDGALYAISDKVEFGK  109 (297)
T ss_dssp             EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-------ECCCTTCCCBCSCCEECTTSSEEEEEECTTTSS
T ss_pred             ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-------EeccccccccccceEECCCCCEEEEEEeCCCCc
Confidence            34556677899999999999986 88999999876 4321       112334 46789999999999999998  4455


Q ss_pred             EEEEec--CCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          308 VRVWKV--IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       308 V~iWdl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      ++||.+  .++. ...+.... ....+.+.+++...++.               ...++.+.+|...   ........+.
T Consensus       110 ~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~---------------~~~~~~~~l~~~~---~~~~~~~~~~  169 (297)
T 2ojh_A          110 SAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYC---------------GIRDQVFDIYSMD---IDSGVETRLT  169 (297)
T ss_dssp             CEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEE---------------EEETTEEEEEEEE---TTTCCEEECC
T ss_pred             ceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEE---------------ECCCCceEEEEEE---CCCCcceEcc
Confidence            666655  4433 22222222 22333333332211111               1112222222211   1122345566


Q ss_pred             cCCCCEeEEEEeCCC-eEEEEe-CCCeEEEEECC-CCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCC-----------
Q 011126          386 GHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVG-IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID-----------  450 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g-~l~sgs-~Dg~V~lWd~~-~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D-----------  450 (493)
                      .|...+.+++|+|++ +|+.++ .++.++||++. .+..+..+. |...+.+++|+| ++++|++++.+           
T Consensus       170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~  248 (297)
T 2ojh_A          170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLD  248 (297)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEE
T ss_pred             cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCc
Confidence            788899999999999 666555 68999999886 444455554 778899999999 99999988876           


Q ss_pred             CeEEEEeCCCCeEE---EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          451 GKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       451 g~V~IWdl~~~~~~---~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +.|++||+.+++..   ....|...+..++|+|||++|++++.+
T Consensus       249 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          249 VRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             EEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             eEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            56999999987653   344677889999999999999888765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.75  E-value=6.6e-16  Score=152.61  Aligned_cols=225  Identities=14%  Similarity=0.078  Sum_probs=159.0

Q ss_pred             cccceeccCCCeEE-eeecCCeEEEEECCCccccccccccceeeecccC---------CEEEEEEccCCCEEEEEE--CC
Q 011126          238 HGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---------SILTMKFSLDGQYLASGG--ED  305 (493)
Q Consensus       238 ~~~~~fsp~g~~la-sgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~---------~I~~l~fspdg~~Lasgs--~D  305 (493)
                      ...++|+|+|++++ +...++.|.+||.......       ..+..+..         .+..+.|+|+|++|++++  .+
T Consensus        91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  163 (353)
T 3vgz_A           91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK-------GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE  163 (353)
T ss_dssp             CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE-------EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS
T ss_pred             cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE-------EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC
Confidence            44589999999555 4556799999998755421       12222221         278999999999887776  47


Q ss_pred             CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      +.|.+||+.+++.+..+......+..+.+.+++.. ++               ....++.+.+|+......    +..+.
T Consensus       164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~---------------~~~~~~~i~~~d~~~~~~----~~~~~  223 (353)
T 3vgz_A          164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR-LY---------------TTNADGELITIDTADNKI----LSRKK  223 (353)
T ss_dssp             CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE-EE---------------EECTTSEEEEEETTTTEE----EEEEE
T ss_pred             ceEEEEcCCCCceEEEecCCCCccceEEECCCCCE-EE---------------EEcCCCeEEEEECCCCeE----EEEEE
Confidence            89999999999988877644444555555554422 11               112244555565543322    22232


Q ss_pred             ----cCCCCEeEEEEeCCC-eEEEE-eCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeC
Q 011126          386 ----GHSSEVLDLSWSKNG-FLLSS-SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEV  458 (493)
Q Consensus       386 ----~h~~~V~~l~~sp~g-~l~sg-s~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl  458 (493)
                          ++...+..++|+|++ +++.+ ..++.|.+||+.+++.+..+..... ..++|+| ++++++.+ ..++.|.+||+
T Consensus       224 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~-dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          224 LLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNP-ARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEET-TTTEEEEEETTTTEEEEEET
T ss_pred             cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECC-CCCEEEEEECCCCeEEEEEC
Confidence                356678899999998 55554 4569999999999999888874433 5799999 88855554 47899999999


Q ss_pred             CCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          459 RRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       459 ~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      .+++++........+..++|+|||++|+++...
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          302 KSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             TTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             CCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            999988766666688999999999988776653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.73  E-value=5.2e-16  Score=164.10  Aligned_cols=225  Identities=10%  Similarity=0.069  Sum_probs=159.7

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEEC--CCccccccccccceeeecccCCEEEEEEcc----CCCEEEEEEC-CCcEEE
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPV--KKQSRELSSLYTGQEFLAHEGSILTMKFSL----DGQYLASGGE-DGTVRV  310 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~--~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp----dg~~Lasgs~-Dg~V~i  310 (493)
                      +..++|+|+|++|++++.+++|++||+  .+..       ...++. +...+..++|+|    ||++|++++. +++|.|
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-------~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v  252 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-------KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI  252 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-------EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-------EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEE
Confidence            345889999999999999999999999  4322       223444 445689999999    9999999885 899999


Q ss_pred             EecCCCeeeeeeeccCC-----------CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeeccc
Q 011126          311 WKVIEHERLDGFDVQDT-----------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  379 (493)
                      ||..+++.+..+.....           .+..+.+++.+.               ...+....++.+.+|+.......  
T Consensus       253 ~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~---------------~~~vs~~~~g~i~vvd~~~~~~l--  315 (543)
T 1nir_A          253 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP---------------EFIVNVKETGKVLLVNYKDIDNL--  315 (543)
T ss_dssp             EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS---------------EEEEEETTTTEEEEEECTTSSSC--
T ss_pred             EeccccccceeecccCcccCccccccCCceEEEEECCCCC---------------EEEEEECCCCeEEEEEecCCCcc--
Confidence            99999998887765321           112222222221               11223344556666655432211  


Q ss_pred             ceEEEecCCCCEeEEEEeCCC-eEE-EEeCCCeEEEEECCCCcEEEEec-----CCCcEEEEEEccCCCCEEEEEe-CCC
Q 011126          380 PLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGS-IDG  451 (493)
Q Consensus       380 ~~~~~~~h~~~V~~l~~sp~g-~l~-sgs~Dg~V~lWd~~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs-~Dg  451 (493)
                      .+..+ .+...+.+++|+|+| +|+ ++..+++|.+||+.+++++..+.     |......+ ++|..+.+++++. .|+
T Consensus       316 ~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~  393 (543)
T 1nir_A          316 TVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDG  393 (543)
T ss_dssp             EEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSS
T ss_pred             eeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCc
Confidence            01122 356678899999999 555 45568999999999999988875     54444333 5773377777776 589


Q ss_pred             eEEEEeCCC-------CeEEE-ecCCCCCeEEEEEccCCCEEEEee
Q 011126          452 KVRIWEVRR-------CQVVD-YTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       452 ~V~IWdl~~-------~~~~~-~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      +|.|||+.+       .+++. +..+...+..|+++|||++|++++
T Consensus       394 ~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          394 SISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             eEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence            999999988       77774 666777888999999999999876

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.73  E-value=7.5e-16  Score=147.29  Aligned_cols=212  Identities=13%  Similarity=0.094  Sum_probs=146.7

Q ss_pred             eeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC-CeeeeeeeccC-CCC
Q 011126          252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-HERLDGFDVQD-TDP  329 (493)
Q Consensus       252 sgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~-~~~~~~~~~~~-~~~  329 (493)
                      .++.++.|++|+.......        .+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+. ..+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~--------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~   87 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR--------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICN   87 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE--------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBC
T ss_pred             CCCcceeEEEEeCCCCcee--------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccc
Confidence            3567899999998754421        3456889999999999999999987 78999999998 76655444332 334


Q ss_pred             ceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEE-EEeC
Q 011126          330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSA  407 (493)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~-sgs~  407 (493)
                      ..+.|.+++... +.......           ....+..++...     .....+..+ ..+..++|+|++ +|+ ++..
T Consensus        88 ~~~~~spdg~~l-~~~~~~~~-----------~~~~l~~~~~~~-----~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~  149 (297)
T 2ojh_A           88 NDHGISPDGALY-AISDKVEF-----------GKSAIYLLPSTG-----GTPRLMTKN-LPSYWHGWSPDGKSFTYCGIR  149 (297)
T ss_dssp             SCCEECTTSSEE-EEEECTTT-----------SSCEEEEEETTC-----CCCEECCSS-SSEEEEEECTTSSEEEEEEEE
T ss_pred             cceEECCCCCEE-EEEEeCCC-----------CcceEEEEECCC-----CceEEeecC-CCccceEECCCCCEEEEEECC
Confidence            555665544321 11111110           122333332211     122333333 348899999999 555 7889


Q ss_pred             CCeEEEEEC--CCCcEEEEecCCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeCC--CCeEEEecCCCCCeEEEEEccCC
Q 011126          408 DKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVR--RCQVVDYTDIREIVSAVCYCPDG  482 (493)
Q Consensus       408 Dg~V~lWd~--~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~--~~~~~~~~~~~~~I~sv~~spdG  482 (493)
                      ++.++||++  .++.......+...+.+++|+| ++++|+.++ .++.++||++.  .+.+..+..+...+..++|+|+|
T Consensus       150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  228 (297)
T 2ojh_A          150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG  228 (297)
T ss_dssp             TTEEEEEEEETTTCCEEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS
T ss_pred             CCceEEEEEECCCCcceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC
Confidence            999999985  4455555455888999999999 999887766 58999999875  45566677778889999999999


Q ss_pred             CEEEEeecC
Q 011126          483 KVRQNSACN  491 (493)
Q Consensus       483 ~~l~s~s~d  491 (493)
                      ++|++++.+
T Consensus       229 ~~l~~~~~~  237 (297)
T 2ojh_A          229 DKVVFVSYD  237 (297)
T ss_dssp             SEEEEEEEE
T ss_pred             CEEEEEEcC
Confidence            999888754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.72  E-value=5.1e-16  Score=152.40  Aligned_cols=229  Identities=10%  Similarity=0.095  Sum_probs=152.6

Q ss_pred             cceeccCCCeEEeeec-CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC---cEEEEecCC
Q 011126          240 SATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG---TVRVWKVIE  315 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg---~V~iWdl~~  315 (493)
                      .++|+|+|+++++++. ++.|.+|+.......      ...+..+..++.+++|+|+|++|+++..++   .|++||+.+
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK------VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK  117 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCE------EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee------EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence            6899999997666554 899999998765421      224555666666699999999999555553   899999999


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee-ecccceEEEecCCCCEeEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR-LLEKPLHEFQGHSSEVLDL  394 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~V~~l  394 (493)
                      ++.+..+.... .+..+.+.+++.. ++........             .+.+|+...-. +.... .....+...+..+
T Consensus       118 ~~~~~~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~-------------~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~  181 (331)
T 3u4y_A          118 NKFISTIPIPY-DAVGIAISPNGNG-LILIDRSSAN-------------TVRRFKIDADGVLFDTG-QEFISGGTRPFNI  181 (331)
T ss_dssp             TEEEEEEECCT-TEEEEEECTTSSC-EEEEEETTTT-------------EEEEEEECTTCCEEEEE-EEEECSSSSEEEE
T ss_pred             CCeEEEEECCC-CccceEECCCCCE-EEEEecCCCc-------------eEEEEEECCCCcEeecC-CccccCCCCccce
Confidence            98877766533 2345555554432 2222221111             02222221000 00000 1122344568999


Q ss_pred             EEeCCC-eE-EEEeCCCeEEEEECCCCcE---EEEecCCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeCCCCeEE--E-
Q 011126          395 SWSKNG-FL-LSSSADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVV--D-  465 (493)
Q Consensus       395 ~~sp~g-~l-~sgs~Dg~V~lWd~~~~~~---~~~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~~~~~~--~-  465 (493)
                      +|+|+| ++ +++..++.|++||+.+++.   +..+.....+..++|+| ++++|+.+. .++.|.+||+.++++.  . 
T Consensus       182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~  260 (331)
T 3u4y_A          182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTLSFVKS  260 (331)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCceeeecc
Confidence            999999 44 5555789999999999988   77777778889999999 999766554 5788999999998872  1 


Q ss_pred             ecCC----C---CCeEEEEEccCCCEEEEeecC
Q 011126          466 YTDI----R---EIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       466 ~~~~----~---~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +...    .   .....++|+|||++|++++.+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  293 (331)
T 3u4y_A          261 FGHGLLIDPRPLFGANQMALNKTETKLFISANI  293 (331)
T ss_dssp             EECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred             cccccccCCCCcccccceEECCCCCEEEEecCC
Confidence            1111    1   223568999999998877654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.71  E-value=1e-15  Score=150.30  Aligned_cols=232  Identities=12%  Similarity=0.151  Sum_probs=145.1

Q ss_pred             cccccceeccCCCeEEeeecC-CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEEEec
Q 011126          236 DRHGSATLKPGDHELTLGQRM-RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKV  313 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~d-g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~iWdl  313 (493)
                      ..+..++|+|+|++|++++.+ +.|++|++......+.   ....+..+. .+..++|+|+|++|++++. ++.|++||+
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT---FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE---EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee---eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            455669999999998888876 9999999873221111   112333333 7889999999998877765 889999999


Q ss_pred             CCC---eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc-eeecccceE--EEec-
Q 011126          314 IEH---ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-FRLLEKPLH--EFQG-  386 (493)
Q Consensus       314 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~--~~~~-  386 (493)
                      ..+   +....+... ..+..+.+.+++.. ++.              ....+..+.+|+... ..+.  .+.  .+.. 
T Consensus       114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~-l~~--------------~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~  175 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGL-DGCHSANISPDNRT-LWV--------------PALKQDRICLFTVSDDGHLV--AQDPAEVTTV  175 (343)
T ss_dssp             ETTEEEEEEEEECCC-TTBCCCEECTTSSE-EEE--------------EEGGGTEEEEEEECTTSCEE--EEEEEEEECS
T ss_pred             CCCccccccccccCC-CCceEEEECCCCCE-EEE--------------ecCCCCEEEEEEecCCCcee--eecccccccC
Confidence            433   333333322 22334444443321 111              111234455554332 1110  011  2222 


Q ss_pred             CCCCEeEEEEeCCC-eEE-EEeCCCeEEEEECCC--CcE--EEEec-------CCCcEEEEEEccCCCCEEE-EEeCCCe
Q 011126          387 HSSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGI--DRC--LRVFS-------HNNYVTSVAFNPVDDNYFI-SGSIDGK  452 (493)
Q Consensus       387 h~~~V~~l~~sp~g-~l~-sgs~Dg~V~lWd~~~--~~~--~~~~~-------h~~~V~~v~fsp~d~~~l~-sgs~Dg~  452 (493)
                      ....+..++|+|++ +|+ ++..++.|++|++..  +..  +..+.       ....+..++|+| ++++|+ ++..++.
T Consensus       176 ~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~  254 (343)
T 1ri6_A          176 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASL  254 (343)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTE
T ss_pred             CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCE
Confidence            34578899999999 554 455899999999953  332  22222       134677899999 888776 4557999


Q ss_pred             EEEEeCC--CC--eEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          453 VRIWEVR--RC--QVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       453 V~IWdl~--~~--~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      |++||+.  ++  +.+........+..++|+|+|++|++++.
T Consensus       255 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  296 (343)
T 1ri6_A          255 ITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ  296 (343)
T ss_dssp             EEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECT
T ss_pred             EEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecC
Confidence            9999998  33  34433333334889999999998888764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.69  E-value=2.7e-16  Score=172.11  Aligned_cols=224  Identities=9%  Similarity=0.031  Sum_probs=153.0

Q ss_pred             ccccceeccCCCeEEeeec-CC-----eEEEEECCCccccccccccceeeeccc------------------------CC
Q 011126          237 RHGSATLKPGDHELTLGQR-MR-----RVRVHPVKKQSRELSSLYTGQEFLAHE------------------------GS  286 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~-dg-----~V~vwd~~~~~~~~~~~~~~~~l~~H~------------------------~~  286 (493)
                      .+..++|+|||++|++++. ++     .|++|++.+.....       .+..|.                        ..
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL-------LVDSKVVLPGTETLSDEEKARRERQRIAAMTG  110 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE-------EECGGGTC--------------------CCEE
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE-------ccchhhcccccccccchhhhhhhhhhhccccC
Confidence            4556899999999999988 88     99999987654221       122222                        23


Q ss_pred             EEEEEEccCCCEEEEEECCCcEEEEecCCCe--eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc
Q 011126          287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (493)
Q Consensus       287 I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  364 (493)
                      |..++|+|||++|++++. +.|++||+.++.  ....+..+...+..+.|++++...++.  .               +.
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~--~---------------~~  172 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFI--R---------------GR  172 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEE--E---------------TT
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEE--e---------------CC
Confidence            789999999999999886 899999998873  333444444445556666554322111  1               12


Q ss_pred             eEEEcCCCceeecccceEEEecCCC----------------CEeEEEEeCCC-eEEEEeCCC------------------
Q 011126          365 TCVVLPPKVFRLLEKPLHEFQGHSS----------------EVLDLSWSKNG-FLLSSSADK------------------  409 (493)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~----------------~V~~l~~sp~g-~l~sgs~Dg------------------  409 (493)
                      .+.+|+......    ......+..                .+..++|+|+| +|++++.|+                  
T Consensus       173 ~i~~~d~~~g~~----~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~  248 (741)
T 2ecf_A          173 NLWVIDLASGRQ----MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDV  248 (741)
T ss_dssp             EEEEEETTTTEE----EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred             cEEEEecCCCCE----EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccc
Confidence            455554432111    111111222                24789999999 888887665                  


Q ss_pred             ---------------eEEEEECCC-CcEEEEe---cCCCcEEEEEEccCCCCEEEEEeC-----CCeEEEEeCCCCeEEE
Q 011126          410 ---------------TVRLWQVGI-DRCLRVF---SHNNYVTSVAFNPVDDNYFISGSI-----DGKVRIWEVRRCQVVD  465 (493)
Q Consensus       410 ---------------~V~lWd~~~-~~~~~~~---~h~~~V~~v~fsp~d~~~l~sgs~-----Dg~V~IWdl~~~~~~~  465 (493)
                                     .|++||+.+ ++.....   .|...+..++| | ++++|+.++.     +..|++||+.+++...
T Consensus       249 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~  326 (741)
T 2ecf_A          249 IEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRV  326 (741)
T ss_dssp             EEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred             eEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEE
Confidence                           899999988 8765554   37789999999 9 9999987764     5789999999987664


Q ss_pred             ec-CCCC----CeEEEEEccCCCEEEEeecC
Q 011126          466 YT-DIRE----IVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       466 ~~-~~~~----~I~sv~~spdG~~l~s~s~d  491 (493)
                      .. .+..    .+..++|+|||+++++++.+
T Consensus       327 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  357 (741)
T 2ecf_A          327 LAHETSPTWVPLHNSLRFLDDGSILWSSERT  357 (741)
T ss_dssp             EEEEECSSCCCCCSCCEECTTSCEEEEECTT
T ss_pred             EEEcCCCCcCCcCCceEECCCCeEEEEecCC
Confidence            32 2222    45689999999977777654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.69  E-value=5.7e-15  Score=145.81  Aligned_cols=227  Identities=11%  Similarity=0.041  Sum_probs=159.0

Q ss_pred             cccccceeccCCCeEEeeec-------CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCCc
Q 011126          236 DRHGSATLKPGDHELTLGQR-------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGT  307 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~-------dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~  307 (493)
                      .....++|+|+++++++++.       ++.|.+||.......       ..+. +...+..++|+|+|++|+.+ ..++.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-------~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~  112 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-------QAIH-NDLKPFGATINNTTQTLWFGNTVNSA  112 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-------EEEE-ESSCCCSEEEETTTTEEEEEETTTTE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-------EEEe-cCCCcceEEECCCCCEEEEEecCCCE
Confidence            34456899999998888763       678999998754421       1222 23457789999999966554 55799


Q ss_pred             EEEEecCCCeeeeeeeccCCC---------CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126          308 VRVWKVIEHERLDGFDVQDTD---------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (493)
                      |.+||+.+++.+..+..+...         +..+.+.+++.. ++..             ....+..+.+|+.....   
T Consensus       113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~-------------~~~~~~~i~~~d~~~~~---  175 (353)
T 3vgz_A          113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT-VYIS-------------GIGKESVIWVVDGGNIK---  175 (353)
T ss_dssp             EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE-EEEE-------------EESSSCEEEEEETTTTE---
T ss_pred             EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCE-EEEE-------------ecCCCceEEEEcCCCCc---
Confidence            999999999988777664322         233444433321 1111             11234556666654332   


Q ss_pred             cceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-----CCCcEEEEEEccCCCCEEEEEeC-CC
Q 011126          379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSI-DG  451 (493)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~-Dg  451 (493)
                       .+..+..+...+..++|+|++ +|++++.++.|.+||+.+++.+..+.     +...+..++|+| ++++|++++. ++
T Consensus       176 -~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~  253 (353)
T 3vgz_A          176 -LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAA  253 (353)
T ss_dssp             -EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSS
T ss_pred             -eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCC
Confidence             244455456668899999999 88888999999999999999887775     355788999999 8887666654 59


Q ss_pred             eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          452 KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       452 ~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      .|.+||+.+++++.......+ ..++|+|||++++++..
T Consensus       254 ~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~  291 (353)
T 3vgz_A          254 EVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHR  291 (353)
T ss_dssp             EEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEET
T ss_pred             EEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEEC
Confidence            999999999988754333333 56999999997776653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.68  E-value=4.8e-15  Score=156.70  Aligned_cols=219  Identities=12%  Similarity=0.126  Sum_probs=154.0

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEec--CCCee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV--IEHER  318 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl--~~~~~  318 (493)
                      ..++|++.++++++.+++|.+||......       .+++..+.. +..++|+|||++|++++.|++|++||+  .+++.
T Consensus       143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~~~-------~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~  214 (543)
T 1nir_A          143 NDLDLPNLFSVTLRDAGQIALVDGDSKKI-------VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK  214 (543)
T ss_dssp             SCCCGGGEEEEEEGGGTEEEEEETTTCCE-------EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred             cccCCCCEEEEEEcCCCeEEEEECCCceE-------EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE
Confidence            35899999999999999999999875432       234552333 899999999999999999999999999  88888


Q ss_pred             eeeeeccCCCCceEEEee----CCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec--------
Q 011126          319 LDGFDVQDTDPSCLYFTI----NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG--------  386 (493)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--------  386 (493)
                      +..+... ..+..+.+++    ++. .++..              ...+..+.+|+.....    ++..+..        
T Consensus       215 ~~~i~~g-~~p~~va~sp~~~~dg~-~l~v~--------------~~~~~~v~v~D~~t~~----~~~~i~~~g~~~~~~  274 (543)
T 1nir_A          215 VAEIKIG-IEARSVESSKFKGYEDR-YTIAG--------------AYWPPQFAIMDGETLE----PKQIVSTRGMTVDTQ  274 (543)
T ss_dssp             EEEEECC-SEEEEEEECCSTTCTTT-EEEEE--------------EEESSEEEEEETTTCC----EEEEEECCEECSSSC
T ss_pred             EEEEecC-CCcceEEeCCCcCCCCC-EEEEE--------------EccCCeEEEEeccccc----cceeecccCcccCcc
Confidence            8777643 3345555554    321 12211              1123445555544322    2333332        


Q ss_pred             --CC-CCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEE--EecCCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeC
Q 011126          387 --HS-SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEV  458 (493)
Q Consensus       387 --h~-~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~--~~~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl  458 (493)
                        |. ..+..+.++|++  ++++...+++|.+||+.+.+.+.  .+.+...+..+.|+| ++++|++++ .+++|.+||+
T Consensus       275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~  353 (543)
T 1nir_A          275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDS  353 (543)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEET
T ss_pred             ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECC-CCCEEEEEecCCCeEEEEEC
Confidence              22 378999999987  77888899999999998876554  556778888999999 999776554 5899999999


Q ss_pred             CCCeEEEecC-----CCCCeEEEEEccC-CCEEEEee
Q 011126          459 RRCQVVDYTD-----IREIVSAVCYCPD-GKVRQNSA  489 (493)
Q Consensus       459 ~~~~~~~~~~-----~~~~I~sv~~spd-G~~l~s~s  489 (493)
                      .+++++....     |......+ ++|+ |..++++.
T Consensus       354 ~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~  389 (543)
T 1nir_A          354 KDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH  389 (543)
T ss_dssp             TTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred             CCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEecc
Confidence            9999875322     44444443 5787 55555543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.68  E-value=7.2e-15  Score=145.51  Aligned_cols=231  Identities=12%  Similarity=0.089  Sum_probs=145.3

Q ss_pred             cccccceeccCCCeEEeeec---CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEEEE
Q 011126          236 DRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVW  311 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~---dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~iW  311 (493)
                      .....++|+|+|+ |++++.   ++.|++|++......     ....+..|...+..++|+|+|++|++++ .++.|++|
T Consensus        40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~-----~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~  113 (347)
T 3hfq_A           40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH-----KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM  113 (347)
T ss_dssp             SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-----EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-----EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence            4455699999999 555443   689999998543321     1223455777889999999999998888 68999999


Q ss_pred             ecCC-Ce--eeeeeeccCC---------CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCC-ceeecc
Q 011126          312 KVIE-HE--RLDGFDVQDT---------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK-VFRLLE  378 (493)
Q Consensus       312 dl~~-~~--~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~  378 (493)
                      ++.. +.  .+..+.....         .+..+.+.+++.  ++...              ..+..+.+|+.. ...+  
T Consensus       114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~--------------~~~~~v~~~~~~~~g~~--  175 (347)
T 3hfq_A          114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVID--------------LGSDKVYVYNVSDAGQL--  175 (347)
T ss_dssp             EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEE--------------TTTTEEEEEEECTTSCE--
T ss_pred             EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEe--------------CCCCEEEEEEECCCCcE--
Confidence            9963 22  2222222111         122344444332  32222              223334444332 1111  


Q ss_pred             cceEEEec-CCCCEeEEEEeCCC-eEE-EEeCCCeEEEEECCC--CcE--EEEec-C------CCcEEEEEEccCCCCEE
Q 011126          379 KPLHEFQG-HSSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGI--DRC--LRVFS-H------NNYVTSVAFNPVDDNYF  444 (493)
Q Consensus       379 ~~~~~~~~-h~~~V~~l~~sp~g-~l~-sgs~Dg~V~lWd~~~--~~~--~~~~~-h------~~~V~~v~fsp~d~~~l  444 (493)
                      ..+..+.. ....+..++|+|+| +|+ ++..++.|++|++..  ++.  +..+. .      ...+..++|+| ++++|
T Consensus       176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l  254 (347)
T 3hfq_A          176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFL  254 (347)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEE
T ss_pred             EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEE
Confidence            11122222 23367889999999 454 456789999999874  443  22222 1      15689999999 99977


Q ss_pred             -EEEeCCCeEEEEeCCC-C--eEE-EecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          445 -ISGSIDGKVRIWEVRR-C--QVV-DYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       445 -~sgs~Dg~V~IWdl~~-~--~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                       ++...++.|.+|++.. +  +.+ ....+...+..++|+|||++|++++.+
T Consensus       255 ~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          255 YVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             EEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred             EEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence             5666789999999972 2  333 344445678999999999999888754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.68  E-value=1.5e-14  Score=141.87  Aligned_cols=222  Identities=11%  Similarity=0.128  Sum_probs=146.6

Q ss_pred             eeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEEEecCCCee-
Q 011126          242 TLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHER-  318 (493)
Q Consensus       242 ~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~iWdl~~~~~-  318 (493)
                      .|.+++. .++++..++.|++||.......       ..+..+...+ .++|+|+|++|++++. ++.|++||+.+++. 
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~   75 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEIL-------NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK   75 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEE-------EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCccccee-------eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence            4555555 4677888999999998755432       2234455566 9999999997777665 88999999998886 


Q ss_pred             eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC
Q 011126          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (493)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  398 (493)
                      ...+.........+.+.+++...+  ....           ......+.+|+......    +..+. +...+.+++|+|
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg~~l~--~~~~-----------~~~~~~i~v~d~~~~~~----~~~~~-~~~~~~~~~~sp  137 (331)
T 3u4y_A           76 VVAIQEGQSSMADVDITPDDQFAV--TVTG-----------LNHPFNMQSYSFLKNKF----ISTIP-IPYDAVGIAISP  137 (331)
T ss_dssp             EEEEEECSSCCCCEEECTTSSEEE--ECCC-----------SSSSCEEEEEETTTTEE----EEEEE-CCTTEEEEEECT
T ss_pred             EEecccCCCCccceEECCCCCEEE--EecC-----------CCCcccEEEEECCCCCe----EEEEE-CCCCccceEECC
Confidence            555555444333355544432111  1100           00111566666543322    33333 344578999999


Q ss_pred             CC-e-EEEEeCCCe-EEEEECCCCcEE-----EEecCCCcEEEEEEccCCCCEEE-EEeCCCeEEEEeCCCCeE---EEe
Q 011126          399 NG-F-LLSSSADKT-VRLWQVGIDRCL-----RVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVRRCQV---VDY  466 (493)
Q Consensus       399 ~g-~-l~sgs~Dg~-V~lWd~~~~~~~-----~~~~h~~~V~~v~fsp~d~~~l~-sgs~Dg~V~IWdl~~~~~---~~~  466 (493)
                      +| + +++...++. |.+|++.....+     ..+.....+..++|+| ++++++ ++..++.|++||+.+++.   +..
T Consensus       138 dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~  216 (331)
T 3u4y_A          138 NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNA  216 (331)
T ss_dssp             TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred             CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence            99 4 455566688 999998754332     3334566789999999 898554 555689999999998876   654


Q ss_pred             cCCCCCeEEEEEccCCCEEEEeec
Q 011126          467 TDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       467 ~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ......+..++|+|||+++++++.
T Consensus       217 ~~~~~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          217 VGTNNLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             EECSSCCCCEEECTTSSEEEEECS
T ss_pred             ccCCCCCceEEECCCCCEEEEEEc
Confidence            445577889999999998776643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.68  E-value=6.5e-16  Score=168.48  Aligned_cols=220  Identities=9%  Similarity=0.037  Sum_probs=148.2

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccC---CEEEEEEccCCCEEEEEECC---------
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGED---------  305 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~D---------  305 (493)
                      ..+++|+|+|+++++ +.||+|++|+..+...       .+.+.+|..   .|..++|+|||++|++++.+         
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~   90 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTS-------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYT   90 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-------EEEeccccccccccceEEECCCCCEEEEEecCccceeecce
Confidence            445899999998776 6899999999875542       123445554   49999999999999999875         


Q ss_pred             CcEEEEecCCCeeeeeeeccCC---CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126          306 GTVRVWKVIEHERLDGFDVQDT---DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (493)
                      +.|++||+.+++. ..+.....   .+..+.|++++....+..                 ...+.+|+.....    ...
T Consensus        91 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~-----------------~~~i~~~~~~~g~----~~~  148 (723)
T 1xfd_A           91 GYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-----------------ENNIYYCAHVGKQ----AIR  148 (723)
T ss_dssp             SEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-----------------TTEEEEESSSSSC----CEE
T ss_pred             eeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEE-----------------CCeEEEEECCCCc----eEE
Confidence            7788999998875 22322211   234455555543222211                 1245555543211    122


Q ss_pred             EEecCCC------------------CEeEEEEeCCC-eEEEEeCCC----------------------------------
Q 011126          383 EFQGHSS------------------EVLDLSWSKNG-FLLSSSADK----------------------------------  409 (493)
Q Consensus       383 ~~~~h~~------------------~V~~l~~sp~g-~l~sgs~Dg----------------------------------  409 (493)
                      ....+..                  .+.+++|+|+| +|++++.|+                                  
T Consensus       149 ~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  228 (723)
T 1xfd_A          149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSI  228 (723)
T ss_dssp             EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEE
T ss_pred             EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCee
Confidence            2222222                  23789999999 888777543                                  


Q ss_pred             eEEEEECCCCcEEEEec-C------CCcEEEEEEccCCCCEEEEEeC----CCeEEEEeCCCCeEEEec--CCCCCe---
Q 011126          410 TVRLWQVGIDRCLRVFS-H------NNYVTSVAFNPVDDNYFISGSI----DGKVRIWEVRRCQVVDYT--DIREIV---  473 (493)
Q Consensus       410 ~V~lWd~~~~~~~~~~~-h------~~~V~~v~fsp~d~~~l~sgs~----Dg~V~IWdl~~~~~~~~~--~~~~~I---  473 (493)
                      +|++||+.++++...+. +      ...+..++|+| |+++|++...    +..|++||+.++++....  .+...+   
T Consensus       229 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~  307 (723)
T 1xfd_A          229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQ  307 (723)
T ss_dssp             EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred             EEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEecc
Confidence            79999999888655554 2      67899999999 9998877653    357999999998866432  223333   


Q ss_pred             -EEEEEccCCCEEEEe
Q 011126          474 -SAVCYCPDGKVRQNS  488 (493)
Q Consensus       474 -~sv~~spdG~~l~s~  488 (493)
                       ..++|+|||+.|+..
T Consensus       308 ~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          308 NEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             CCCCEECTTSCSEEEE
T ss_pred             CCCceEcCCCCeEEEE
Confidence             378999999987765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.67  E-value=8.7e-16  Score=163.54  Aligned_cols=223  Identities=10%  Similarity=-0.002  Sum_probs=151.7

Q ss_pred             ccccceeccCCCeEEeeec-CCeEEEEECCCccccccccccceeeeccc-CCEEEEEEccCCCEEEEEEC---CCcEEEE
Q 011126          237 RHGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGE---DGTVRVW  311 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~---Dg~V~iW  311 (493)
                      .+.+++|+|||++||.++. +|+++||++....  .      +.+..|. ..|..+.|+|| +++++++.   +...+||
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~------~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--T------VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALF   93 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--E------EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEcCCC--c------EeeecccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence            3566899999999999877 9999999974322  1      1234455 68999999999 77887775   5556776


Q ss_pred             ecCC--CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          312 KVIE--HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       312 dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      .+..  ......+... .......+++++...++...              ..+ ...+|+..     ......+..+..
T Consensus        94 ~~~~~~~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~--------------~~~-~~~l~d~~-----~g~~~~l~~~~~  152 (582)
T 3o4h_A           94 KVNTSRPGEEQRLEAV-KPMRILSGVDTGEAVVFTGA--------------TED-RVALYALD-----GGGLRELARLPG  152 (582)
T ss_dssp             EEETTSTTCCEECTTS-CSBEEEEEEECSSCEEEEEE--------------CSS-CEEEEEEE-----TTEEEEEEEESS
T ss_pred             EEeccCCCccccccCC-CCceeeeeCCCCCeEEEEec--------------CCC-CceEEEcc-----CCcEEEeecCCC
Confidence            6543  2211122211 12234455555543333221              111 11233221     222223333333


Q ss_pred             CEeEEEEeCCC-eEEEEeCC----CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC--eEEEEeCCCCe
Q 011126          390 EVLDLSWSKNG-FLLSSSAD----KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG--KVRIWEVRRCQ  462 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~D----g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg--~V~IWdl~~~~  462 (493)
                        .+++|+|+| +|++++.+    ..|++||+.+++......|...+..++|+| ||++|+++..++  .|++||+.+++
T Consensus       153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             --CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCC
T ss_pred             --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCc
Confidence              789999999 88877776    789999999988776666889999999999 999999888898  99999999988


Q ss_pred             EEEecCCCCCeEEEE--------EccCCCEEEEeecCC
Q 011126          463 VVDYTDIREIVSAVC--------YCPDGKVRQNSACNF  492 (493)
Q Consensus       463 ~~~~~~~~~~I~sv~--------~spdG~~l~s~s~d~  492 (493)
                      ...+..+...+..+.        |+|||+++++++.+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g  267 (582)
T 3o4h_A          230 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG  267 (582)
T ss_dssp             EEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred             EEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence            775566666666666        999997777776553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.66  E-value=4.5e-15  Score=162.41  Aligned_cols=240  Identities=10%  Similarity=0.078  Sum_probs=160.6

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      .+..++|+|||++|++++. +.|++|++......     ....+..|...+..++|+|||++|+.++ ++.|++||+.++
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~-----~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA-----AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT-----SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc-----eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence            3566999999999999886 99999998765100     1123556888999999999999999987 468999999988


Q ss_pred             eeeeeeeccCC----------------CCceEEEeeCCCCceeeeeccCccccc---------------eee-eecC--C
Q 011126          317 ERLDGFDVQDT----------------DPSCLYFTINHLSQLIPIDVDKEKIDK---------------TKS-LRKS--S  362 (493)
Q Consensus       317 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~-~~~s--~  362 (493)
                      +..........                ....+.|++++...++. ..+......               ... ..+.  .
T Consensus       183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~-~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYA-RIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEE-EEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEE-EEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            76544332221                13456676665433332 222111100               000 0001  1


Q ss_pred             CceEEEcCCCc-eeecccceEEE--ecCCCCEeEEEEeCCC-eEEEEeC-----CCeEEEEECCCCcEEEEec-CC-C--
Q 011126          363 DLTCVVLPPKV-FRLLEKPLHEF--QGHSSEVLDLSWSKNG-FLLSSSA-----DKTVRLWQVGIDRCLRVFS-HN-N--  429 (493)
Q Consensus       363 ~~~~~~~~~~~-~~~~~~~~~~~--~~h~~~V~~l~~sp~g-~l~sgs~-----Dg~V~lWd~~~~~~~~~~~-h~-~--  429 (493)
                      ...+.+|+... ...    ....  ..|...+..++| |+| +|+.++.     +..|++||+.++++...+. +. .  
T Consensus       262 ~~~l~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~  336 (741)
T 2ecf_A          262 QVKLGVISPAEQAQT----QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV  336 (741)
T ss_dssp             EEEEEEECSSTTCCC----EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred             eeEEEEEECCCCCce----EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence            12455555443 221    1111  147788999999 999 6665543     5789999999998877775 22 2  


Q ss_pred             -cEEEEEEccCCCCEEEEEeCCCeEEEEeCC-CCeEEEecCCCCCeEEE-EEccCCCEEEEeec
Q 011126          430 -YVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVDYTDIREIVSAV-CYCPDGKVRQNSAC  490 (493)
Q Consensus       430 -~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~-~~~~~~~~~~~~~I~sv-~~spdG~~l~s~s~  490 (493)
                       .+..++|+| +++++++++.||.++||.+. +++...+..+...|..+ .|+|||+.|+..+.
T Consensus       337 ~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~  399 (741)
T 2ecf_A          337 PLHNSLRFLD-DGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAG  399 (741)
T ss_dssp             CCCSCCEECT-TSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred             CcCCceEECC-CCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence             456899999 99999999999987777665 33455677777888887 59999998876554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.66  E-value=1.5e-14  Score=141.79  Aligned_cols=217  Identities=12%  Similarity=0.160  Sum_probs=138.8

Q ss_pred             eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC-CcEEEEecC--CCee--eeeee
Q 011126          249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-GTVRVWKVI--EHER--LDGFD  323 (493)
Q Consensus       249 ~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-g~V~iWdl~--~~~~--~~~~~  323 (493)
                      ++++++.++.|++|++.... ...   .. ....|...+.+++|+|+|++|++++.+ +.|++|++.  +++.  +..+.
T Consensus         7 l~~~~~~~~~v~~~~~~~~~-~~~---~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   81 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEG-ALT---LT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA   81 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTS-CEE---EE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEEeCCCCCeEEEEEECCCC-cEE---Ee-eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc
Confidence            44455789999999986321 111   11 123477789999999999999998887 999999997  4443  33343


Q ss_pred             ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE
Q 011126          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL  402 (493)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l  402 (493)
                      ... .+..+.+.+++.. ++.              ....++.+.+|+.... ...+.+..+.. ...+.+++|+|++ +|
T Consensus        82 ~~~-~~~~~~~s~dg~~-l~~--------------~~~~~~~i~~~d~~~~-~~~~~~~~~~~-~~~~~~~~~s~dg~~l  143 (343)
T 1ri6_A           82 LPG-SLTHISTDHQGQF-VFV--------------GSYNAGNVSVTRLEDG-LPVGVVDVVEG-LDGCHSANISPDNRTL  143 (343)
T ss_dssp             CSS-CCSEEEECTTSSE-EEE--------------EETTTTEEEEEEEETT-EEEEEEEEECC-CTTBCCCEECTTSSEE
T ss_pred             cCC-CCcEEEEcCCCCE-EEE--------------EecCCCeEEEEECCCC-ccccccccccC-CCCceEEEECCCCCEE
Confidence            333 4555555544321 111              2222444555544200 01122333333 3458899999999 67


Q ss_pred             EEEe-CCCeEEEEECCC-CcEEEE----e--cCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeCCC--CeE--E-Eec-
Q 011126          403 LSSS-ADKTVRLWQVGI-DRCLRV----F--SHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRR--CQV--V-DYT-  467 (493)
Q Consensus       403 ~sgs-~Dg~V~lWd~~~-~~~~~~----~--~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl~~--~~~--~-~~~-  467 (493)
                      ++++ .++.|++||+.+ ++....    +  .....+.+++|+| ++++|+++ ..++.|++|++..  +++  . ... 
T Consensus       144 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~  222 (343)
T 1ri6_A          144 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM  222 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred             EEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccc
Confidence            7666 899999999987 654322    2  2456788999999 88876554 4889999999953  432  1 111 


Q ss_pred             --CC---CCCeEEEEEccCCCEEEEee
Q 011126          468 --DI---REIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       468 --~~---~~~I~sv~~spdG~~l~s~s  489 (493)
                        ..   ...+..++|+|+|++|+++.
T Consensus       223 ~~~~~~~~~~~~~i~~s~dg~~l~v~~  249 (343)
T 1ri6_A          223 MPENFSDTRWAADIHITPDGRHLYACD  249 (343)
T ss_dssp             SCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred             cCccccccCCccceEECCCCCEEEEEe
Confidence              11   23577899999999887665

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.65  E-value=4.1e-15  Score=169.29  Aligned_cols=183  Identities=9%  Similarity=0.089  Sum_probs=152.7

Q ss_pred             ecccccceec-cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccC-CEEEEEEccCCCEEEEEECCCcEE-EE
Q 011126          235 IDRHGSATLK-PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG-SILTMKFSLDGQYLASGGEDGTVR-VW  311 (493)
Q Consensus       235 ~~~~~~~~fs-p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~-~I~~l~fspdg~~Lasgs~Dg~V~-iW  311 (493)
                      ...+..++|+ |+|++|++++ ++.|.+|+......        ..+..|.. .+..+.|+ ||+.|+.++.++.|. +|
T Consensus       295 ~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~  364 (1045)
T 1k32_A          295 IPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV--------LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIY  364 (1045)
T ss_dssp             CGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE--------EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEE
T ss_pred             ccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce--------EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEE
Confidence            3456779999 9999999987 78999999875431        12456777 89999999 999999999887788 88


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      ++.+++.                                                               ..+.+|...+
T Consensus       365 d~~~~~~---------------------------------------------------------------~~l~~~~~~~  381 (1045)
T 1k32_A          365 DYRTGKA---------------------------------------------------------------EKFEENLGNV  381 (1045)
T ss_dssp             ETTTCCE---------------------------------------------------------------EECCCCCCSE
T ss_pred             ECCCCCc---------------------------------------------------------------eEecCCccce
Confidence            8765431                                                               1122567788


Q ss_pred             eEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCC----------eEEEEeCC
Q 011126          392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG----------KVRIWEVR  459 (493)
Q Consensus       392 ~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg----------~V~IWdl~  459 (493)
                      ..++|+|+| +|++++.++.|++||+.+++....+ .|...+.+++|+| ++++|++++.++          .|++||+.
T Consensus       382 ~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          382 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             eeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            999999999 9999999999999999999988887 5888999999999 999999887754          89999999


Q ss_pred             CCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          460 RCQVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       460 ~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ++++..+..+...+..++|+|||++|+.++.+
T Consensus       461 ~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~  492 (1045)
T 1k32_A          461 GRKIFAATTENSHDYAPAFDADSKNLYYLSYR  492 (1045)
T ss_dssp             TTEEEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred             CCcEEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence            99977888888899999999999999887753

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.64  E-value=1.1e-14  Score=158.58  Aligned_cols=242  Identities=8%  Similarity=0.065  Sum_probs=155.0

Q ss_pred             cccceeccCCCeEEeeecC---------CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126          238 HGSATLKPGDHELTLGQRM---------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~d---------g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V  308 (493)
                      +.+++|+|||++|++++.+         +.|.+|++......  .+   ....+|...+..++|+|||++||.++. +.|
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~l---~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i  136 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ--SL---DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNI  136 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE--EC---CCTTCCSCCCSBCCBCSSTTCEEEEET-TEE
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE--ec---cCCccccccccccEECCCCCEEEEEEC-CeE
Confidence            5679999999999998764         78889998865421  11   112356666899999999999999886 789


Q ss_pred             EEEecCCCeeeeeeeccCCCC------------------ceEEEeeCCCCceeeeeccCccccceee-------------
Q 011126          309 RVWKVIEHERLDGFDVQDTDP------------------SCLYFTINHLSQLIPIDVDKEKIDKTKS-------------  357 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  357 (493)
                      ++||+.+++.......+....                  ..+.|++++...++. ..+.........             
T Consensus       137 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~  215 (723)
T 1xfd_A          137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA-AINDSRVPIMELPTYTGSIYPTVKP  215 (723)
T ss_dssp             EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE-EEECTTSCEEEECCCSSSSSCCCEE
T ss_pred             EEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE-EECCCccceEEeeccCCcCCCccee
Confidence            999999887655444322222                  456666665433222 222111100000             


Q ss_pred             ee----c--CCCceEEEcCCCceeecccceEEEec------CCCCEeEEEEeCCC-eEEEEe----CCCeEEEEECCCCc
Q 011126          358 LR----K--SSDLTCVVLPPKVFRLLEKPLHEFQG------HSSEVLDLSWSKNG-FLLSSS----ADKTVRLWQVGIDR  420 (493)
Q Consensus       358 ~~----~--s~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~V~~l~~sp~g-~l~sgs----~Dg~V~lWd~~~~~  420 (493)
                      +.    +  .....+.+|+.....    ....+..      |...+..++|+|+| +|++..    .+..|++||+.+++
T Consensus       216 ~~~~~~G~~~~~~~l~~~d~~~~~----~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~  291 (723)
T 1xfd_A          216 YHYPKAGSENPSISLHVIGLNGPT----HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV  291 (723)
T ss_dssp             EECCBTTSCCCEEEEEEEESSSSC----CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             ccCCCCCCCCCeeEEEEEECCCCc----eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence            00    0  112355566554322    1233333      36678999999999 665554    23679999999998


Q ss_pred             EEEEec--CCCcEE----EEEEccCCCCEEEE--EeCCC------eEEEEe-CCCCe---EEEecCCCCCeEE-EEEccC
Q 011126          421 CLRVFS--HNNYVT----SVAFNPVDDNYFIS--GSIDG------KVRIWE-VRRCQ---VVDYTDIREIVSA-VCYCPD  481 (493)
Q Consensus       421 ~~~~~~--h~~~V~----~v~fsp~d~~~l~s--gs~Dg------~V~IWd-l~~~~---~~~~~~~~~~I~s-v~~spd  481 (493)
                      +...+.  +...+.    .++|+| +++.|+.  +..++      .|++|| ..+++   ...+......+.. ++|+||
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spd  370 (723)
T 1xfd_A          292 CTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK  370 (723)
T ss_dssp             EEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT
T ss_pred             ceEEEEeccCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCC
Confidence            877653  444443    789999 8886664  45677      677888 45555   4455544445554 699999


Q ss_pred             CCEEEEeecC
Q 011126          482 GKVRQNSACN  491 (493)
Q Consensus       482 G~~l~s~s~d  491 (493)
                      |+.|+..+.+
T Consensus       371 g~~l~~~~~~  380 (723)
T 1xfd_A          371 GNKIYFLSTE  380 (723)
T ss_dssp             TTEEEEEESS
T ss_pred             CCEEEEEEcC
Confidence            9999876653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.63  E-value=1.1e-13  Score=137.72  Aligned_cols=235  Identities=12%  Similarity=0.102  Sum_probs=144.7

Q ss_pred             ecccccceeccCCCeEEeeecC----CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEE
Q 011126          235 IDRHGSATLKPGDHELTLGQRM----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVR  309 (493)
Q Consensus       235 ~~~~~~~~fsp~g~~lasgs~d----g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~  309 (493)
                      ......++|+|+|++|++++.+    +.|.+|++......+.   ....+..+......+++  ++++|++++ .++.|.
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~---~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~  123 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH---LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSIT  123 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE---EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEE
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE---EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEE
Confidence            3445568999999999998875    8999998865322221   11233445566778888  888887776 578999


Q ss_pred             EEecCCCeeeeeee----ccCC----------CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee
Q 011126          310 VWKVIEHERLDGFD----VQDT----------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR  375 (493)
Q Consensus       310 iWdl~~~~~~~~~~----~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  375 (493)
                      +|++.....+..+.    ....          .+..+.+.+++.. ++.              ....+..+.+|+.....
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~-l~~--------------~~~~~~~v~v~~~~~~~  188 (361)
T 3scy_A          124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY-LLA--------------DDLGTDQIHKFNINPNA  188 (361)
T ss_dssp             EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE-EEE--------------EETTTTEEEEEEECTTC
T ss_pred             EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE-EEE--------------EeCCCCEEEEEEEcCCC
Confidence            99997554332221    1000          0122333332211 111              12223334444222110


Q ss_pred             -------ecc--cceEEEecCCCCEeEEEEeCCC-eEEEEe-CCCeEEEEECCCCcEE--EEec----CCCcEEEEEEcc
Q 011126          376 -------LLE--KPLHEFQGHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCL--RVFS----HNNYVTSVAFNP  438 (493)
Q Consensus       376 -------~~~--~~~~~~~~h~~~V~~l~~sp~g-~l~sgs-~Dg~V~lWd~~~~~~~--~~~~----h~~~V~~v~fsp  438 (493)
                             +..  ........+...+..++|+|+| +|++++ .++.|.+|++.++...  ..+.    +...+..++|+|
T Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp  268 (361)
T 3scy_A          189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP  268 (361)
T ss_dssp             CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT
T ss_pred             CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC
Confidence                   000  0011122345567899999999 666666 6899999999876542  2222    345678999999


Q ss_pred             CCCCEEEEEeCC--CeEEEEeCC--CCeE--EEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          439 VDDNYFISGSID--GKVRIWEVR--RCQV--VDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       439 ~d~~~l~sgs~D--g~V~IWdl~--~~~~--~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                       ++++|+++..+  +.|.+|++.  ++++  +........+..++|+|||++|++++.
T Consensus       269 -dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          269 -DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             -TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred             -CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEEC
Confidence             99988766654  899999996  4543  322222567889999999999988874

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.63  E-value=6e-14  Score=137.21  Aligned_cols=219  Identities=11%  Similarity=0.138  Sum_probs=145.6

Q ss_pred             CeEEeeecCCeEEEEECCCccccccccccceeee-cccC-CEEEEEEccCCCEEE-EEECCCcEEEEecCCCeeeeeeec
Q 011126          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEG-SILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHERLDGFDV  324 (493)
Q Consensus       248 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H~~-~I~~l~fspdg~~La-sgs~Dg~V~iWdl~~~~~~~~~~~  324 (493)
                      .++++++.++.|++||.......       +.+. ++.. .+..++|+|+|++|+ ++..++.|.+||+.+++.+..+..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~   74 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVD-------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE-------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEE-------EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence            47899999999999998754321       1222 2222 478899999998764 555678999999999988776664


Q ss_pred             cC-----CCCceEEEeeCCCCceeeeeccCccccceeeeecC----CCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          325 QD-----TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS----SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       325 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      ..     ..+..+.+.+++.. ++...... .      ....    .+..+.+|+.....    .+..+.. ...+.+++
T Consensus        75 ~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~-~------~~~~~~~~~~~~i~v~d~~~~~----~~~~~~~-~~~~~~~~  141 (337)
T 1pby_B           75 STPEERVKSLFGAALSPDGKT-LAIYESPV-R------LELTHFEVQPTRVALYDAETLS----RRKAFEA-PRQITMLA  141 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSE-EEEEEEEE-E------ECSSCEEECCCEEEEEETTTTE----EEEEEEC-CSSCCCEE
T ss_pred             CCcccccccccceEECCCCCE-EEEEeccc-c------cccccccccCceEEEEECCCCc----EEEEEeC-CCCcceeE
Confidence            32     13445555444322 11111000 0      0000    24556666654322    2333332 44577889


Q ss_pred             EeCCC-eEEEEeCCCeEEEEECCCCcEEEEec------------------------------------------------
Q 011126          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS------------------------------------------------  426 (493)
Q Consensus       396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~------------------------------------------------  426 (493)
                      |+|++ +|+++  ++.|.+||+.+++.+..+.                                                
T Consensus       142 ~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (337)
T 1pby_B          142 WARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT  219 (337)
T ss_dssp             ECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred             ECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccccc
Confidence            99998 66666  6889999998777665442                                                


Q ss_pred             -------------------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEE
Q 011126          427 -------------------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQN  487 (493)
Q Consensus       427 -------------------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s  487 (493)
                                         +...+.+++|+| ++++|+++  ++.|++||+.+++.+........+.+++|+|||++|++
T Consensus       220 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  296 (337)
T 1pby_B          220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWL  296 (337)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEE
T ss_pred             ceEEEeCCCCCceEeecCCCCCceeeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEE
Confidence                               112345699999 99998888  79999999999988765555567899999999998888


Q ss_pred             eecC
Q 011126          488 SACN  491 (493)
Q Consensus       488 ~s~d  491 (493)
                      ++.+
T Consensus       297 ~~~~  300 (337)
T 1pby_B          297 GGAL  300 (337)
T ss_dssp             ESBS
T ss_pred             EcCC
Confidence            7544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.63  E-value=3.9e-14  Score=154.08  Aligned_cols=230  Identities=14%  Similarity=0.108  Sum_probs=149.5

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCC-----ccccccccccceeeecccC--------------CEEEEEEccCC
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----QSRELSSLYTGQEFLAHEG--------------SILTMKFSLDG  296 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~-----~~~~~~~~~~~~~l~~H~~--------------~I~~l~fspdg  296 (493)
                      ..+..++|+|+|++||++ .++.|++|++..     .....       ....+..              .+.++.|+|||
T Consensus       121 ~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~-------~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg  192 (706)
T 2z3z_A          121 EETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIA-------VTIDGTETLVYGQAVHQREFGIEKGTFWSPKG  192 (706)
T ss_dssp             TCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEE-------SCSCCBTTEEESSCCGGGCTTCCCSEEECTTS
T ss_pred             ccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEE-------eccCCCCCeEcccchhhhhcCCCceEEECCCC
Confidence            446679999999999995 789999999875     33211       0111222              25889999999


Q ss_pred             CEEEEEE---------------------------------CCCcEEEEecCCCeeeeeeec--cCCCCceEEEeeCCCCc
Q 011126          297 QYLASGG---------------------------------EDGTVRVWKVIEHERLDGFDV--QDTDPSCLYFTINHLSQ  341 (493)
Q Consensus       297 ~~Lasgs---------------------------------~Dg~V~iWdl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  341 (493)
                      ++|++++                                 .+..|++||+.+++.......  +...+..+.|++++.. 
T Consensus       193 ~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-  271 (706)
T 2z3z_A          193 SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI-  271 (706)
T ss_dssp             SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE-
T ss_pred             CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCE-
Confidence            9999987                                 446799999988875443322  1122334444444322 


Q ss_pred             eeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe--cCC---CCEeEEEEeC--CC-eEEEEeCCCeEEE
Q 011126          342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ--GHS---SEVLDLSWSK--NG-FLLSSSADKTVRL  413 (493)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~h~---~~V~~l~~sp--~g-~l~sgs~Dg~V~l  413 (493)
                      ++....+.          ......+.+|+.....    ....+.  .+.   ..+..++|+|  +| +++++..|+.++|
T Consensus       272 l~~~~~~~----------~~~~~~v~~~d~~~g~----~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l  337 (706)
T 2z3z_A          272 LYVAEVNR----------AQNECKVNAYDAETGR----FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL  337 (706)
T ss_dssp             EEEEEECT----------TSCEEEEEEEETTTCC----EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred             EEEEEeCC----------CCCeeEEEEEECCCCc----eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEE
Confidence            11111111          1122345555544321    111111  122   2346789999  99 8888999999999


Q ss_pred             EECC-CCcEEEEec-CCCcEEE-EEEccCCCCEEEEEeC-CC----eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEE
Q 011126          414 WQVG-IDRCLRVFS-HNNYVTS-VAFNPVDDNYFISGSI-DG----KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVR  485 (493)
Q Consensus       414 Wd~~-~~~~~~~~~-h~~~V~~-v~fsp~d~~~l~sgs~-Dg----~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l  485 (493)
                      |++. .+..+..+. +...+.. ++|+| +++.|+.++. ++    .|+.||+.+++...+. +...+.+++|+|||+++
T Consensus       338 ~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l  415 (706)
T 2z3z_A          338 YLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGKTKDLT-PESGMHRTQLSPDGSAI  415 (706)
T ss_dssp             EEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCCCEESC-CSSSEEEEEECTTSSEE
T ss_pred             EEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCCceecc-CCCceEEEEECCCCCEE
Confidence            9886 566666665 6667776 89999 8887765554 44    7888888887754443 66779999999999998


Q ss_pred             EEeec
Q 011126          486 QNSAC  490 (493)
Q Consensus       486 ~s~s~  490 (493)
                      +.+..
T Consensus       416 ~~~~~  420 (706)
T 2z3z_A          416 IDIFQ  420 (706)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            87654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.63  E-value=5.5e-14  Score=138.32  Aligned_cols=234  Identities=9%  Similarity=0.045  Sum_probs=151.4

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeeccc-CCEEEEEEccCCCEEE-EEECCCcEEEEecCCCee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~La-sgs~Dg~V~iWdl~~~~~  318 (493)
                      +++++++.++++++.++.|++||..+...       .+.+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-------~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~   77 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTV-------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN   77 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEE-------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcE-------EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE
Confidence            67889999999999999999999875432       11233222 2577899999998665 455789999999999988


Q ss_pred             eeeeeccCC------CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126          319 LDGFDVQDT------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (493)
Q Consensus       319 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (493)
                      ...+.....      .+..+.+.+++... +......... ..  ........+.+|+...... .+.+..+. +...+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l-~~~~~~~~~~-~~--~~~~~~~~i~~~d~~~~~~-~~~~~~~~-~~~~~~  151 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISPDGKEV-YATVNPTQRL-ND--HYVVKPPRLEVFSTADGLE-AKPVRTFP-MPRQVY  151 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEE-EEEEEEEEEC-SS--CEEECCCEEEEEEGGGGGG-BCCSEEEE-CCSSCC
T ss_pred             EEEEEcccccccccccccceEECCCCCEE-EEEccccccc-cc--ccccCCCeEEEEECCCccc-cceeeecc-CCCccc
Confidence            777765332      14555555544322 1111100000 00  0001124566666543221 12233333 334688


Q ss_pred             EEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCC-------------------------------------------
Q 011126          393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNN-------------------------------------------  429 (493)
Q Consensus       393 ~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~-------------------------------------------  429 (493)
                      +++|+|+|.++.++  +.|.+||+.+++.+..+....                                           
T Consensus       152 ~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  229 (349)
T 1jmx_B          152 LMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA  229 (349)
T ss_dssp             CEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred             ceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence            99999999444443  349999999888777664211                                           


Q ss_pred             --------------------------cEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCC
Q 011126          430 --------------------------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK  483 (493)
Q Consensus       430 --------------------------~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~  483 (493)
                                                .+..++|+|.++++++++  ++.|++||+.+++.+........+..++|+|||+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~  307 (349)
T 1jmx_B          230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGD  307 (349)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSS
T ss_pred             ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCC
Confidence                                      344566667567788877  8899999999999876554556688999999999


Q ss_pred             EEEEeecC
Q 011126          484 VRQNSACN  491 (493)
Q Consensus       484 ~l~s~s~d  491 (493)
                      +|++++.+
T Consensus       308 ~l~~~~~~  315 (349)
T 1jmx_B          308 KLYLGGTF  315 (349)
T ss_dssp             CEEEESBS
T ss_pred             EEEEecCC
Confidence            88886543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.61  E-value=1e-13  Score=135.61  Aligned_cols=210  Identities=12%  Similarity=0.091  Sum_probs=141.9

Q ss_pred             ccccceeccCCCeEEeee------------cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC
Q 011126          237 RHGSATLKPGDHELTLGQ------------RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs------------~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (493)
                      .+..++|+|+|++|+++.            .++.|.+|+.......       ..+.. ...+..++|+|+|++|+++  
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~-~~~~~~~~~s~dg~~l~~~--  152 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR-------KAFEA-PRQITMLAWARDGSKLYGL--  152 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE-------EEEEC-CSSCCCEEECTTSSCEEEE--
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE-------EEEeC-CCCcceeEECCCCCEEEEe--
Confidence            455689999999998886            5799999998754321       12222 3457889999999988887  


Q ss_pred             CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecC----------CCceEEEcCCCce
Q 011126          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS----------SDLTCVVLPPKVF  374 (493)
Q Consensus       305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----------~~~~~~~~~~~~~  374 (493)
                      ++.|++||+.+++....+....... ...+.+++.. ++...... ...........          ....+.+++....
T Consensus       153 ~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~-l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  229 (337)
T 1pby_B          153 GRDLHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLA-VWNQHESS-GVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             SSSEEEEETTTTEEEEEECSTTTTT-TTBCCCBCCC-CCCCCTTT-TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             CCeEEEEECCCCcEeeeeeccccCC-CceeCCCccE-EeeeccCC-CceeeeeeccccccccccccccccceEEEeCCCC
Confidence            6889999999998876665443111 1123333221 11111000 00000000000          0013455555443


Q ss_pred             eecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeE
Q 011126          375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKV  453 (493)
Q Consensus       375 ~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V  453 (493)
                      ...   ...+..+...+.+++|+|++ +++++  ++.|.+||+.+++.+..+.....+.+++|+| ++++|++++.++.|
T Consensus       230 ~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i  303 (337)
T 1pby_B          230 EMA---MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVST-DGSTVWLGGALGDL  303 (337)
T ss_dssp             CEE---EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECT-TSCEEEEESBSSEE
T ss_pred             Cce---EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECC-CCCEEEEEcCCCcE
Confidence            322   23345567788999999999 77766  7999999999999988888777889999999 99999999999999


Q ss_pred             EEEeCCCCeEEE
Q 011126          454 RIWEVRRCQVVD  465 (493)
Q Consensus       454 ~IWdl~~~~~~~  465 (493)
                      ++||+.+++.+.
T Consensus       304 ~v~d~~~~~~~~  315 (337)
T 1pby_B          304 AAYDAETLEKKG  315 (337)
T ss_dssp             EEEETTTCCEEE
T ss_pred             EEEECcCCcEEE
Confidence            999999988774

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.59  E-value=2.9e-14  Score=162.27  Aligned_cols=226  Identities=4%  Similarity=0.037  Sum_probs=162.4

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      +..|...+.++.|+++ .+++++..++.++||.+.......      +.+..|. .+..++|+|||++|+.+ .++.|++
T Consensus       199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~------~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~  269 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL------RKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYI  269 (1045)
T ss_dssp             EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC------EECCCCC-SSCEEEEEESSSCEEEE-ETTEEEE
T ss_pred             CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc------eEecCCC-CcceeeEcCCCCEEEEE-eCCEEEE
Confidence            3556667777899988 677778888999999865322211      2334454 46677999999999887 4899999


Q ss_pred             EecCCCeeeeeeeccC-----------CCCceEEEe-eCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126          311 WKVIEHERLDGFDVQD-----------TDPSCLYFT-INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (493)
                      |++.... +..+....           ..+..+.|+ +++...++..                 ...+.+++...     
T Consensus       270 ~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-----------------~~~i~~~~~~~-----  326 (1045)
T 1k32_A          270 FNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-----------------RGQAFIQDVSG-----  326 (1045)
T ss_dssp             ECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-----------------TTEEEEECTTS-----
T ss_pred             ecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-----------------cCEEEEEcCCC-----
Confidence            9994433 33333211           123444444 4332211110                 33455555432     


Q ss_pred             cceEEEecCCC-CEeEEEEeCCC-eEEEEeCCCeEE-EEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEE
Q 011126          379 KPLHEFQGHSS-EVLDLSWSKNG-FLLSSSADKTVR-LWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (493)
Q Consensus       379 ~~~~~~~~h~~-~V~~l~~sp~g-~l~sgs~Dg~V~-lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I  455 (493)
                      .....+..|.. .+..++|+ +| .|+.++.+..|. +||+.++.......|...+..++|+| ++++|++++.++.|++
T Consensus       327 ~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~  404 (1045)
T 1k32_A          327 TYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMT  404 (1045)
T ss_dssp             SBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred             CceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECC-CCCEEEEECCCCeEEE
Confidence            22334566777 89999999 88 888888888898 99998877665556778999999999 9999999999999999


Q ss_pred             EeCCCCeEEEec-CCCCCeEEEEEccCCCEEEEeec
Q 011126          456 WEVRRCQVVDYT-DIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       456 Wdl~~~~~~~~~-~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ||+.++++.... .|...+.+++|+|||++|++++.
T Consensus       405 ~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~  440 (1045)
T 1k32_A          405 VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP  440 (1045)
T ss_dssp             EETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred             EECCCCceEEeccCCCCCccceEECCCCCeEEEEec
Confidence            999999887654 78888999999999999988765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.59  E-value=5.3e-14  Score=153.04  Aligned_cols=241  Identities=11%  Similarity=0.087  Sum_probs=157.5

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC-
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-  315 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~-  315 (493)
                      .+.+++|+|+ ..++.+ .++.|++||+.....        ..+..|...+..++|+|||++|+++ .|+.|++|++.+ 
T Consensus        83 ~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~--------~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~  151 (706)
T 2z3z_A           83 PSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV--------TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKL  151 (706)
T ss_dssp             CCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE--------EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCT
T ss_pred             CceeEEECCC-CeEEEE-ECCEEEEEECCCCce--------EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcc
Confidence            4566899999 655555 459999999875432        1244567788999999999999985 689999999988 


Q ss_pred             ----CeeeeeeeccCCC--------------CceEEEeeCCCCceeeeeccCccccceeee------------------e
Q 011126          316 ----HERLDGFDVQDTD--------------PSCLYFTINHLSQLIPIDVDKEKIDKTKSL------------------R  359 (493)
Q Consensus       316 ----~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~  359 (493)
                          ++...........              ...+.|++++...++. ..+..........                  .
T Consensus       152 ~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~-~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~  230 (706)
T 2z3z_A          152 GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY-RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT  230 (706)
T ss_dssp             TSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE-EEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred             cccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE-EECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence                7655433322221              3566676665433322 2111111111000                  0


Q ss_pred             cCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCC-----eEEEEECCCCc-EEEEec--CCC-
Q 011126          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK-----TVRLWQVGIDR-CLRVFS--HNN-  429 (493)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg-----~V~lWd~~~~~-~~~~~~--h~~-  429 (493)
                      ...+..+.+|+.......  .+.....|...+..++|+|+| +|++++.++     .|++||+.+++ ......  +.. 
T Consensus       231 ~~~~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~  308 (706)
T 2z3z_A          231 PSHHVTVGIYHLATGKTV--YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHY  308 (706)
T ss_dssp             CCCEEEEEEEETTTTEEE--ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSC
T ss_pred             CCCeeEEEEEECCCCceE--eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCe
Confidence            113355666665432211  111112467789999999999 788877775     99999999984 333332  322 


Q ss_pred             --cEEEEEEcc-CCCCEEEEEeCCCeEEEEeCC-CCe-EEEecCCCCCeEE-EEEccCCCEEEEeecC
Q 011126          430 --YVTSVAFNP-VDDNYFISGSIDGKVRIWEVR-RCQ-VVDYTDIREIVSA-VCYCPDGKVRQNSACN  491 (493)
Q Consensus       430 --~V~~v~fsp-~d~~~l~sgs~Dg~V~IWdl~-~~~-~~~~~~~~~~I~s-v~~spdG~~l~s~s~d  491 (493)
                        .+..++|+| .++++|++++.||.++||.+. +++ +..+..+...+.. ++|+|||+.|+.++.+
T Consensus       309 ~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          309 VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence              346789998 256799999999999999875 444 4456677777877 7999999988777654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.56  E-value=1.1e-14  Score=159.01  Aligned_cols=221  Identities=11%  Similarity=0.087  Sum_probs=144.8

Q ss_pred             cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccC---CEEEEEEccCCCEEEEEEC---------CCc
Q 011126          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGE---------DGT  307 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~---------Dg~  307 (493)
                      .++|+|+|.+++++ .++.|++|+.......       +.+.+|..   .|.+++|||||++|++++.         ++.
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~   91 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-------TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT   91 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-------EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-------EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence            47899999766655 6999999998765422       12333433   4899999999999998876         789


Q ss_pred             EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeec-----ccceE
Q 011126          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-----EKPLH  382 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-----~~~~~  382 (493)
                      |++||+.+++.+..... ......+.|++++....+.                 .+..+.+|+.......     .....
T Consensus        92 i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~-----------------~~~~i~~~~~~~g~~~~l~~~~~~~~  153 (719)
T 1z68_A           92 YYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYV-----------------YQNNIYLKQRPGDPPFQITFNGRENK  153 (719)
T ss_dssp             EEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEE-----------------ETTEEEEESSTTSCCEECCCCCBTTT
T ss_pred             EEEEECCCCccccceec-CcccccceECCCCCEEEEE-----------------ECCeEEEEeCCCCCcEEEecCCCcCC
Confidence            99999999876311111 1234556666665432221                 1234555554322110     00011


Q ss_pred             EEecCCCCE---------eEEEEeCCC-eEEEEeCCC----------------------------------eEEEEECCC
Q 011126          383 EFQGHSSEV---------LDLSWSKNG-FLLSSSADK----------------------------------TVRLWQVGI  418 (493)
Q Consensus       383 ~~~~h~~~V---------~~l~~sp~g-~l~sgs~Dg----------------------------------~V~lWd~~~  418 (493)
                      .+.||...|         ..++|+|+| +|++++.|.                                  +|++||+.+
T Consensus       154 v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~  233 (719)
T 1z68_A          154 IFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY  233 (719)
T ss_dssp             EEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC
T ss_pred             eEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC
Confidence            122332222         589999999 888877552                                  789999998


Q ss_pred             CcEE---EE-----e-cCCCcEEEEEEccCCCCEEEEEeCC----CeEEEEe----CCCCeEEEec-----CCCCCeE--
Q 011126          419 DRCL---RV-----F-SHNNYVTSVAFNPVDDNYFISGSID----GKVRIWE----VRRCQVVDYT-----DIREIVS--  474 (493)
Q Consensus       419 ~~~~---~~-----~-~h~~~V~~v~fsp~d~~~l~sgs~D----g~V~IWd----l~~~~~~~~~-----~~~~~I~--  474 (493)
                      ++..   ..     + .|...+..++|+| |++++++....    ..|++||    +.+++.....     .+...+.  
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~  312 (719)
T 1z68_A          234 PAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGF  312 (719)
T ss_dssp             HHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSS
T ss_pred             CCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccc
Confidence            8753   21     1 3778899999999 88777775432    3589999    8887766433     4555565  


Q ss_pred             ---EEEEccCCCEEEE
Q 011126          475 ---AVCYCPDGKVRQN  487 (493)
Q Consensus       475 ---sv~~spdG~~l~s  487 (493)
                         .+.|+|||+.++.
T Consensus       313 ~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          313 FVSTPVFSYDAISYYK  328 (719)
T ss_dssp             SCCCCEECTTSSCEEE
T ss_pred             cCCccEECCCCCeEEE
Confidence               7899999997655

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.55  E-value=8.5e-13  Score=130.48  Aligned_cols=210  Identities=10%  Similarity=0.134  Sum_probs=128.3

Q ss_pred             eecccccceeccCCCeEEeee-cCCeEEEEECCCccccccccccceeeec---------ccCCEEEEEEccCCCEEEEEE
Q 011126          234 IIDRHGSATLKPGDHELTLGQ-RMRRVRVHPVKKQSRELSSLYTGQEFLA---------HEGSILTMKFSLDGQYLASGG  303 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs-~dg~V~vwd~~~~~~~~~~~~~~~~l~~---------H~~~I~~l~fspdg~~Lasgs  303 (493)
                      +...+..++|+|+|++|++++ .++.|.+|++..... +..   ...+..         +...+.+++|+|+|+++++..
T Consensus        84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~-~~~---~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~  159 (347)
T 3hfq_A           84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA-LTL---TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL  159 (347)
T ss_dssp             ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC-EEE---EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred             CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC-eee---cceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence            345566799999999888877 789999999863211 111   111111         233589999999999666666


Q ss_pred             CCCcEEEEecC-CCeeeee--eeccC-CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc--eeec
Q 011126          304 EDGTVRVWKVI-EHERLDG--FDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV--FRLL  377 (493)
Q Consensus       304 ~Dg~V~iWdl~-~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~  377 (493)
                      .++.|++|++. +++....  +.... ..+..+.+.+++.. ++..              ...+..+.+|+...  ..+ 
T Consensus       160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~-l~v~--------------~~~~~~v~v~~~~~~~g~~-  223 (347)
T 3hfq_A          160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY-AFLA--------------GELSSQIASLKYDTQTGAF-  223 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE-EEEE--------------ETTTTEEEEEEEETTTTEE-
T ss_pred             CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE-EEEE--------------eCCCCEEEEEEecCCCCce-
Confidence            78899999998 4443221  12211 12333444443311 2211              12222333332211  110 


Q ss_pred             ccceEEEecCC------CCEeEEEEeCCC-eE-EEEeCCCeEEEEECCCC---cEEEEec-CCCcEEEEEEccCCCCEEE
Q 011126          378 EKPLHEFQGHS------SEVLDLSWSKNG-FL-LSSSADKTVRLWQVGID---RCLRVFS-HNNYVTSVAFNPVDDNYFI  445 (493)
Q Consensus       378 ~~~~~~~~~h~------~~V~~l~~sp~g-~l-~sgs~Dg~V~lWd~~~~---~~~~~~~-h~~~V~~v~fsp~d~~~l~  445 (493)
                       ..+..+....      ..+..++|+|+| +| ++...++.|.+|++...   ..+..+. +...+..++|+| ++++|+
T Consensus       224 -~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-dg~~l~  301 (347)
T 3hfq_A          224 -TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP-TEAFVV  301 (347)
T ss_dssp             -EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT-TSSEEE
T ss_pred             -EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC-CCCEEE
Confidence             1122222222      458899999999 55 66677999999999733   3444443 566789999999 999888


Q ss_pred             EEeCC-CeEEEE--eCCCCeEEE
Q 011126          446 SGSID-GKVRIW--EVRRCQVVD  465 (493)
Q Consensus       446 sgs~D-g~V~IW--dl~~~~~~~  465 (493)
                      +++.+ +.|.+|  |..++++..
T Consensus       302 v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          302 VVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEcCCCcEEEEEEeCCCCeEEe
Confidence            87765 899999  556777663

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.53  E-value=2.2e-13  Score=136.34  Aligned_cols=230  Identities=10%  Similarity=0.028  Sum_probs=141.5

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECC-CccccccccccceeeecccCCEEEEEEccCCCE--EEEEE----------
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVK-KQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY--LASGG----------  303 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~-~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~--Lasgs----------  303 (493)
                      .+..++|+|+|++|++++.+ .|.+|++. ...  +...   .....+ +.+..++|+|+|++  ++++.          
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~--~~~~---~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  113 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE--IVHE---ASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE--EEEE---EEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCCCC--EEEe---eEeecC-CCCccEEECCCCCEEEEEEecCCcceeccce
Confidence            34568999999999998887 99999985 322  1110   011111 23556899999994  55553          


Q ss_pred             ---CCCcEEEEecC-CCeeeeeeec----cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCC-ce
Q 011126          304 ---EDGTVRVWKVI-EHERLDGFDV----QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK-VF  374 (493)
Q Consensus       304 ---~Dg~V~iWdl~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~  374 (493)
                         .++.+.+|++. +++....+..    ....+..+.+.+++.. ++..+              ..+..+.+|+.. ..
T Consensus       114 ~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~-l~~~~--------------~~~~~v~~~~~~~~g  178 (365)
T 1jof_A          114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY-LYSAD--------------LTANKLWTHRKLASG  178 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-EEEEE--------------TTTTEEEEEEECTTS
T ss_pred             eecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE-EEEEc--------------CCCCEEEEEEECCCC
Confidence               68999999997 4554433332    2223444444444321 22111              112334444432 11


Q ss_pred             eecccceEEEe--cCCCCEeEEEEeCCC-eEEEEe-CCCeEEEEECC--CCcEEE---Eec--------CCC------cE
Q 011126          375 RLLEKPLHEFQ--GHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVG--IDRCLR---VFS--------HNN------YV  431 (493)
Q Consensus       375 ~~~~~~~~~~~--~h~~~V~~l~~sp~g-~l~sgs-~Dg~V~lWd~~--~~~~~~---~~~--------h~~------~V  431 (493)
                      .+  ..+..+.  .|...+..++|+|+| +|++++ .+++|.+|++.  +++...   .+.        |..      .+
T Consensus       179 ~~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  256 (365)
T 1jof_A          179 EV--ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYR  256 (365)
T ss_dssp             CE--EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEE
T ss_pred             CE--EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccc
Confidence            11  1122233  245679999999999 776666 47899999875  455421   221        121      58


Q ss_pred             EEEE-EccCCCCEEEEEeCC-C-----eEEEEeCC-CCeEEE----ecCCCCCeEEEEEcc---CCCEEEEeecC
Q 011126          432 TSVA-FNPVDDNYFISGSID-G-----KVRIWEVR-RCQVVD----YTDIREIVSAVCYCP---DGKVRQNSACN  491 (493)
Q Consensus       432 ~~v~-fsp~d~~~l~sgs~D-g-----~V~IWdl~-~~~~~~----~~~~~~~I~sv~~sp---dG~~l~s~s~d  491 (493)
                      ..++ |+| ++++|+++..+ .     +|.+|++. ++++..    ...+...+..++|+|   ||++|++++.+
T Consensus       257 ~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          257 ADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             EEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             ccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence            8999 999 99988776643 2     89999996 666543    223445567899999   89999988753

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.53  E-value=1.2e-13  Score=138.58  Aligned_cols=235  Identities=10%  Similarity=-0.017  Sum_probs=142.6

Q ss_pred             ceeccCCCeEEeeec-CCe--EEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126          241 ATLKPGDHELTLGQR-MRR--VRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       241 ~~fsp~g~~lasgs~-dg~--V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~  317 (493)
                      .+|+|||++|+.++. ++.  |.+|+.......       +...+|...+..+.|+|||++|+.++.++.|++||+.+++
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-------~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~  113 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-------QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE  113 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-------ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-------EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            789999999998887 674  777787654321       1223455555567899999999999999999999999988


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceee-eeccCcccc---c----eeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIP-IDVDKEKID---K----TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~----~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      ....+..+........+........+. .........   .    ...........+.+++....     ....+..+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-----~~~~l~~~~~  188 (388)
T 3pe7_A          114 ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-----ESTVILQENQ  188 (388)
T ss_dssp             EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-----CEEEEEEESS
T ss_pred             ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-----ceEEeecCCc
Confidence            766555443322222232222222221 111100000   0    00111233455666655432     2344555677


Q ss_pred             CEeEEEEeC-CC-eEEEEeCC------CeEEEEECCCCcEEEEecCC--CcEEEEEEccCCCCEEEEEeC-CC----eEE
Q 011126          390 EVLDLSWSK-NG-FLLSSSAD------KTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSI-DG----KVR  454 (493)
Q Consensus       390 ~V~~l~~sp-~g-~l~sgs~D------g~V~lWd~~~~~~~~~~~h~--~~V~~v~fsp~d~~~l~sgs~-Dg----~V~  454 (493)
                      .+..++|+| +| .|+....+      ..|.++|+..+.......+.  ..+..+.|+| +++.|+..+. ++    .|+
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~  267 (388)
T 3pe7_A          189 WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIY  267 (388)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEE
T ss_pred             cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECC-CCCEEEEEecCCCCCcceEE
Confidence            899999999 88 67666553      37888888766554444444  3688899999 8987765443 22    399


Q ss_pred             EEeCCCCeEEEecCCCCC------eEEEEEccCCCEEEEe
Q 011126          455 IWEVRRCQVVDYTDIREI------VSAVCYCPDGKVRQNS  488 (493)
Q Consensus       455 IWdl~~~~~~~~~~~~~~------I~sv~~spdG~~l~s~  488 (493)
                      +||+.+++...+......      ...+.|+|||+.|+..
T Consensus       268 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~  307 (388)
T 3pe7_A          268 SADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD  307 (388)
T ss_dssp             EECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred             EEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence            999999875432221110      1123799999988754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.52  E-value=2.3e-12  Score=128.18  Aligned_cols=225  Identities=14%  Similarity=0.131  Sum_probs=135.5

Q ss_pred             ccCCCeEEeee----cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC----CcEEEEecCC
Q 011126          244 KPGDHELTLGQ----RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----GTVRVWKVIE  315 (493)
Q Consensus       244 sp~g~~lasgs----~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~V~iWdl~~  315 (493)
                      .+...++++|+    .++.|.+|.+......+..+   ..+  |...+..++|+|+|++|++++.+    +.|.+|++..
T Consensus        10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~---~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~   84 (361)
T 3scy_A           10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPL---SDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK   84 (361)
T ss_dssp             GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEE---EEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred             CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEe---ecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence            33444555653    46789999875433322211   122  66778889999999999999886    7999999865


Q ss_pred             --Ceeee--eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE--Ee----
Q 011126          316 --HERLD--GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE--FQ----  385 (493)
Q Consensus       316 --~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~----  385 (493)
                        ++...  ........+..+.  . ....++...              ..++.+.+|+.............  ..    
T Consensus        85 ~~g~~~~~~~~~~~~~~p~~~~--~-dg~~l~~~~--------------~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~  147 (361)
T 3scy_A           85 EKGTLHLLNTQKTMGADPCYLT--T-NGKNIVTAN--------------YSGGSITVFPIGQDGALLPASDVIEFKGSGP  147 (361)
T ss_dssp             TTTEEEEEEEEECSSSCEEEEE--E-CSSEEEEEE--------------TTTTEEEEEEBCTTSCBCSCSEEEECCCCCS
T ss_pred             CCCcEEEeeEeccCCCCcEEEE--E-CCCEEEEEE--------------CCCCEEEEEEeCCCCcCcccceeEEccCCCC
Confidence              43322  2222222222222  2 222222221              22334444433211110111111  11    


Q ss_pred             ----cCCCCEeEEEEeCCC-eEEE-EeCCCeEEEEECCCCcE--------------EEEecCCCcEEEEEEccCCCCEEE
Q 011126          386 ----GHSSEVLDLSWSKNG-FLLS-SSADKTVRLWQVGIDRC--------------LRVFSHNNYVTSVAFNPVDDNYFI  445 (493)
Q Consensus       386 ----~h~~~V~~l~~sp~g-~l~s-gs~Dg~V~lWd~~~~~~--------------~~~~~h~~~V~~v~fsp~d~~~l~  445 (493)
                          .+...+.+++|+|+| +|+. ...++.|++|++.....              .....+...+..++|+| ++++|+
T Consensus       148 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~  226 (361)
T 3scy_A          148 DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAY  226 (361)
T ss_dssp             CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEE
T ss_pred             CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEE
Confidence                123346889999999 5554 44589999999875431              22233566788999999 999887


Q ss_pred             EEe-CCCeEEEEeCCCCeEEE---e---cCCCCCeEEEEEccCCCEEEEeecC
Q 011126          446 SGS-IDGKVRIWEVRRCQVVD---Y---TDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       446 sgs-~Dg~V~IWdl~~~~~~~---~---~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +++ .++.|++|++.++++..   .   ..+...+..++|+|||++|+++..+
T Consensus       227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~  279 (361)
T 3scy_A          227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL  279 (361)
T ss_dssp             EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred             EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence            777 68999999999876532   1   2333457899999999999776543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.51  E-value=3.1e-13  Score=148.24  Aligned_cols=176  Identities=10%  Similarity=0.086  Sum_probs=129.1

Q ss_pred             ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccC-----CEEEEEEccCCCEEEEEECC--------
Q 011126          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG-----SILTMKFSLDGQYLASGGED--------  305 (493)
Q Consensus       239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~-----~I~~l~fspdg~~Lasgs~D--------  305 (493)
                      ..++|+|+|.+++++  |+.|++|++.+....       +.+.+|..     ....+.|||||++|+.++.+        
T Consensus        20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-------VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY   90 (740)
T ss_dssp             CCEEECSSSEEEEEE--TTEEEEEETTTCCEE-------EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred             cccEECCCCcEEEEc--CCcEEEEECCCCceE-------EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence            358999999999887  999999999866532       12344442     33458899999999998876        


Q ss_pred             -CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          306 -GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       306 -g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                       +.+.+||+.+++..                                                               .+
T Consensus        91 ~~~~~~~d~~~~~~~---------------------------------------------------------------~l  107 (740)
T 4a5s_A           91 TASYDIYDLNKRQLI---------------------------------------------------------------TE  107 (740)
T ss_dssp             EEEEEEEETTTTEEC---------------------------------------------------------------CS
T ss_pred             ceEEEEEECCCCcEE---------------------------------------------------------------Ec
Confidence             45668988776531                                                               12


Q ss_pred             ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcE-----------------EEEEEccCCCCEE
Q 011126          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYV-----------------TSVAFNPVDDNYF  444 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V-----------------~~v~fsp~d~~~l  444 (493)
                      ..|...+...+|||+| .|+.+ .++.|++|++.++...+...  +...+                 ..+.|+| ||++|
T Consensus       108 ~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~l  185 (740)
T 4a5s_A          108 ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFL  185 (740)
T ss_dssp             SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEE
T ss_pred             ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEE
Confidence            3356678999999999 77776 47899999998887654322  22222                 3489999 99999


Q ss_pred             EEEeCCC------------------------------------eEEEEeCCC---C---eEEEec------CCCCCeEEE
Q 011126          445 ISGSIDG------------------------------------KVRIWEVRR---C---QVVDYT------DIREIVSAV  476 (493)
Q Consensus       445 ~sgs~Dg------------------------------------~V~IWdl~~---~---~~~~~~------~~~~~I~sv  476 (493)
                      |.++.|.                                    +|+|||+.+   +   +...+.      ++...+..+
T Consensus       186 a~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  265 (740)
T 4a5s_A          186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDV  265 (740)
T ss_dssp             EEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEE
T ss_pred             EEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEE
Confidence            9886432                                    588999998   7   555543      367789999


Q ss_pred             EEccCCCEEEEe
Q 011126          477 CYCPDGKVRQNS  488 (493)
Q Consensus       477 ~~spdG~~l~s~  488 (493)
                      +|+|||+.++..
T Consensus       266 ~wspdg~~~~~~  277 (740)
T 4a5s_A          266 TWATQERISLQW  277 (740)
T ss_dssp             EEEETTEEEEEE
T ss_pred             EEeCCCeEEEEE
Confidence            999999976654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.50  E-value=1.1e-12  Score=139.60  Aligned_cols=218  Identities=10%  Similarity=-0.008  Sum_probs=145.4

Q ss_pred             ccccceeccCCCeEEeeec---CCeEEEEECCC--ccccccccccceeeecccCCEEEEEEccCCC--EEEEEECCCcEE
Q 011126          237 RHGSATLKPGDHELTLGQR---MRRVRVHPVKK--QSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTVR  309 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~---dg~V~vwd~~~--~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Lasgs~Dg~V~  309 (493)
                      .+..++|+|+ ++++++..   +...+||.+..  .....       .+..+ ..+...+|+|+|+  +++++..+ .+.
T Consensus        66 ~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-------~l~~~-~~~~~~~~s~dg~~~~~~s~~~~-~~~  135 (582)
T 3o4h_A           66 SVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-------RLEAV-KPMRILSGVDTGEAVVFTGATED-RVA  135 (582)
T ss_dssp             EECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-------ECTTS-CSBEEEEEEECSSCEEEEEECSS-CEE
T ss_pred             ccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-------cccCC-CCceeeeeCCCCCeEEEEecCCC-Cce
Confidence            4556889999 77776664   45566655432  21111       11111 2234668888886  34444444 556


Q ss_pred             EEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      +||+.+++.......+.   ....+++++...+....            .......+.+|+...     .....+..|..
T Consensus       136 l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~------------~~~~~~~i~~~d~~~-----g~~~~l~~~~~  195 (582)
T 3o4h_A          136 LYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGF------------FGGGRVSLFTSNLSS-----GGLRVFDSGEG  195 (582)
T ss_dssp             EEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEE------------EETTEEEEEEEETTT-----CCCEEECCSSC
T ss_pred             EEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEE------------cCCCCeEEEEEcCCC-----CCceEeecCCC
Confidence            99999887655444332   55666665533221111            111113455554432     23456778889


Q ss_pred             CEeEEEEeCCC-eEEEEeCCC--eEEEEECCCCcEEEEec-CCCcEEEEE--------EccCCCCEEEEEeCCCeEEEEe
Q 011126          390 EVLDLSWSKNG-FLLSSSADK--TVRLWQVGIDRCLRVFS-HNNYVTSVA--------FNPVDDNYFISGSIDGKVRIWE  457 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~Dg--~V~lWd~~~~~~~~~~~-h~~~V~~v~--------fsp~d~~~l~sgs~Dg~V~IWd  457 (493)
                      .+..++|+|+| .|+++..++  .|++||+.+++.. .+. |...+..+.        |+| ++.++++++.||+++||+
T Consensus       196 ~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          196 SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEE
T ss_pred             ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEE
Confidence            99999999999 888888888  8999999998887 443 666677677        999 889999999999999999


Q ss_pred             CCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          458 VRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       458 l~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +  ++...  .....|.+++|+ ||+++++++.+
T Consensus       274 ~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~  302 (582)
T 3o4h_A          274 D--GERVE--APQGNHGRVVLW-RGKLVTSHTSL  302 (582)
T ss_dssp             T--TEEEC--CCSSEEEEEEEE-TTEEEEEEEET
T ss_pred             E--CCeec--cCCCceEEEEec-CCEEEEEEcCC
Confidence            9  76654  334678999999 99998887765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.50  E-value=2.8e-12  Score=128.30  Aligned_cols=232  Identities=10%  Similarity=0.078  Sum_probs=143.4

Q ss_pred             cceeccCCCeEEeee----------cCCeEEEEECCCccccccccccceeeec------ccCCEEEEEEccCCCEEEEEE
Q 011126          240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLA------HEGSILTMKFSLDGQYLASGG  303 (493)
Q Consensus       240 ~~~fsp~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~~~~l~~------H~~~I~~l~fspdg~~Lasgs  303 (493)
                      .++|+|+|++++++.          .++.|.+||..+.+.       .+++..      +......++|+|||++|+++.
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~-------~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n  126 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF-------EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN  126 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-------EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-------EEEEEcCccccccCCCcceEEECCCCCEEEEEC
Confidence            589999999998876          367899999864332       112221      234566799999999999887


Q ss_pred             C--CCcEEEEecCCCeeeee-eeccCC------C-CceEEEeeCCCCceeeeeccC-ccccce-----------------
Q 011126          304 E--DGTVRVWKVIEHERLDG-FDVQDT------D-PSCLYFTINHLSQLIPIDVDK-EKIDKT-----------------  355 (493)
Q Consensus       304 ~--Dg~V~iWdl~~~~~~~~-~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------------  355 (493)
                      .  +++|.+||+.+++.+.. +.....      + .....+.......+..+.... .+....                 
T Consensus       127 ~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~  206 (361)
T 2oiz_A          127 ASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIA  206 (361)
T ss_dssp             ESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSC
T ss_pred             CCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEE
Confidence            4  58999999999988777 543221      0 001111122222232222211 111000                 


Q ss_pred             ------eeeecCCCceEEEcCCCceeecccceEEEec------C----CCCEeEEEEeCCC-eEEEEeC-----------
Q 011126          356 ------KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG------H----SSEVLDLSWSKNG-FLLSSSA-----------  407 (493)
Q Consensus       356 ------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~------h----~~~V~~l~~sp~g-~l~sgs~-----------  407 (493)
                            ..+....++.+.+++...-..  ..+..+.-      +    ......++++|++ .++.+..           
T Consensus       207 ~~~~g~~~~~~~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~  284 (361)
T 2oiz_A          207 PALDKDKAHFVSYYGNVYSADFSGDEV--KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFP  284 (361)
T ss_dssp             CEECSSEEEEEBTTSEEEEEECSSSSC--EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCC
T ss_pred             ecccCCEEEEEeCCCeEEEEEecCCCc--eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCC
Confidence                  000011122333333211000  00011100      0    0111237899997 4444322           


Q ss_pred             CCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC--eEEEe-cCCCCCeEEEEEccCCC
Q 011126          408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--QVVDY-TDIREIVSAVCYCPDGK  483 (493)
Q Consensus       408 Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~--~~~~~-~~~~~~I~sv~~spdG~  483 (493)
                      .++|.+||+.+++.+..+.... +.+|+|+| ++++|++++. +.|.|||+.++  +++.. ..+......++++|||+
T Consensus       285 ~~~v~viD~~t~~~v~~i~~~~-p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          285 AAEIWVMDTKTKQRVARIPGRD-ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CSEEEEEETTTTEEEEEEECTT-CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CceEEEEECCCCcEEEEEecCC-eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            3589999999999999988445 99999999 9999998887 99999999999  88865 57788889999999986

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.49  E-value=1.4e-11  Score=118.22  Aligned_cols=230  Identities=10%  Similarity=0.145  Sum_probs=148.4

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEE-ccCCCEEEEEEC-CCcEEE
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF-SLDGQYLASGGE-DGTVRV  310 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~Lasgs~-Dg~V~i  310 (493)
                      ++......+++++++.++++...++.|.+|+.....  +..+.......+|...+..+++ .+++.++++... ++.|++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            334455668999999988888899999999976322  1111100011235567899999 467766666543 889999


Q ss_pred             EecCCCeeeeeeeccC-CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe--cC
Q 011126          311 WKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ--GH  387 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~h  387 (493)
                      |+ .+++.+..+.... ..+..+.+.++  ..++..              ......+.+++...     +.+..+.  ++
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~--------------~~~~~~i~~~~~~g-----~~~~~~~~~~~  162 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNK--GRIIVV--------------ECKVMRVIIFDQNG-----NVLHKFGCSKH  162 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTT--SCEEEE--------------ETTTTEEEEECTTS-----CEEEEEECTTT
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCC--CCEEEE--------------ECCCCEEEEEcCCC-----CEEEEeCCCCc
Confidence            99 5666655553321 12233333222  222222              22234455555321     2233332  45


Q ss_pred             CCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecC---CCcEEEEEEccCCCCEEEEEeCCC-eEEEEeCCCCe
Q 011126          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH---NNYVTSVAFNPVDDNYFISGSIDG-KVRIWEVRRCQ  462 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h---~~~V~~v~fsp~d~~~l~sgs~Dg-~V~IWdl~~~~  462 (493)
                      ...+..|+++|+| ++++...++.|++||.. +..+..+..   ...+..|+++| +++++++...++ .|++||.....
T Consensus       163 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~  240 (286)
T 1q7f_A          163 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQL  240 (286)
T ss_dssp             CSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCE
T ss_pred             cCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCE
Confidence            5678999999999 77777789999999974 556666642   36789999999 899999988886 99999975443


Q ss_pred             EEEecCC--CCCeEEEEEccCCCEEEEe
Q 011126          463 VVDYTDI--REIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       463 ~~~~~~~--~~~I~sv~~spdG~~l~s~  488 (493)
                      +..+..+  ...+.+++++|+|+++++.
T Consensus       241 ~~~~~~~~~~~~~~~i~~~~~g~l~vs~  268 (286)
T 1q7f_A          241 ISALESKVKHAQCFDVALMDDGSVVLAS  268 (286)
T ss_dssp             EEEEEESSCCSCEEEEEEETTTEEEEEE
T ss_pred             EEEEcccCCCCcceeEEECCCCcEEEEC
Confidence            3333322  3357899999999877663

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.49  E-value=2.8e-12  Score=126.01  Aligned_cols=216  Identities=12%  Similarity=0.113  Sum_probs=132.8

Q ss_pred             cccceeccCCCeEE-eeecCCeEEEEECCCccccccccccceeee-cc-----cCCEEEEEEccCCCEEEEEECC-----
Q 011126          238 HGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AH-----EGSILTMKFSLDGQYLASGGED-----  305 (493)
Q Consensus       238 ~~~~~fsp~g~~la-sgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H-----~~~I~~l~fspdg~~Lasgs~D-----  305 (493)
                      ...++|+|+|++++ ++..++.|.+|+..+.....       .+. .+     ...+..++|+|+|++|++++.+     
T Consensus        45 ~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~-------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  117 (349)
T 1jmx_B           45 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF-------HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN  117 (349)
T ss_dssp             SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-------EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECS
T ss_pred             CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE-------EEEcccccccccccccceEECCCCCEEEEEcccccccc
Confidence            34589999998654 55678999999987543221       122 12     2337889999999999998865     


Q ss_pred             -------CcEEEEecCCCeee---eeeeccCCCCceEEEeeCCCCceee-------eeccCccccceeeeec--------
Q 011126          306 -------GTVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIP-------IDVDKEKIDKTKSLRK--------  360 (493)
Q Consensus       306 -------g~V~iWdl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--------  360 (493)
                             +.|.+||+.+++..   ..+..+. .+.++.+.+++.  ++.       ++..............        
T Consensus       118 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~--l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  194 (349)
T 1jmx_B          118 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPR-QVYLMRAADDGS--LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSA  194 (349)
T ss_dssp             SCEEECCCEEEEEEGGGGGGBCCSEEEECCS-SCCCEEECTTSC--EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCC
T ss_pred             cccccCCCeEEEEECCCccccceeeeccCCC-cccceeECCCCc--EEEccCcEEEEeCCCCceeccccccccCCccccC
Confidence                   89999999885433   2232222 344555555443  222       1111111110000000        


Q ss_pred             ----------CCCce-----EEEcCCCc---------------eeeccc--ceEEEecCCCCEeEEEEeC-CC-eEEEEe
Q 011126          361 ----------SSDLT-----CVVLPPKV---------------FRLLEK--PLHEFQGHSSEVLDLSWSK-NG-FLLSSS  406 (493)
Q Consensus       361 ----------s~~~~-----~~~~~~~~---------------~~~~~~--~~~~~~~h~~~V~~l~~sp-~g-~l~sgs  406 (493)
                                .....     .+.+....               ......  ....+..+...+..++|+| ++ +++++ 
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-  273 (349)
T 1jmx_B          195 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-  273 (349)
T ss_dssp             CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-
T ss_pred             ccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-
Confidence                      00000     00000000               000000  0111223445678899999 88 77666 


Q ss_pred             CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 011126          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (493)
Q Consensus       407 ~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~  466 (493)
                       ++.|.+||+.+++.+..+.....+.+++|+| ++++|++++.++.|++||+.+++.+..
T Consensus       274 -~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~  331 (349)
T 1jmx_B          274 -LNRLAKYDLKQRKLIKAANLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKN  331 (349)
T ss_dssp             -ESEEEEEETTTTEEEEEEECSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred             -cCeEEEEECccCeEEEEEcCCCCccceEECC-CCCEEEEecCCCeEEEEeccccceeee
Confidence             8999999999999988887666788999999 888888888899999999999987753

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.48  E-value=4.5e-13  Score=146.09  Aligned_cols=242  Identities=10%  Similarity=0.025  Sum_probs=151.4

Q ss_pred             cccceeccCCCeEEeeec---------CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126          238 HGSATLKPGDHELTLGQR---------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~---------dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V  308 (493)
                      +.+++|+|||++|++++.         ++.|++|++.+......     ..+   ...+..++|+|||++||.+. |+.|
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-----~~l---~~~~~~~~~SPDG~~la~~~-~~~i  132 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-----NEL---PRPIQYLCWSPVGSKLAYVY-QNNI  132 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-----SCC---CSSBCCEEECSSTTCEEEEE-TTEE
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-----eec---CcccccceECCCCCEEEEEE-CCeE
Confidence            456899999999999876         78999999986543100     011   24588899999999999886 7899


Q ss_pred             EEEecCCCeeeeeeeccCC------------------CCceEEEeeCCCCceeeeeccCccccceee-------------
Q 011126          309 RVWKVIEHERLDGFDVQDT------------------DPSCLYFTINHLSQLIPIDVDKEKIDKTKS-------------  357 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  357 (493)
                      ++|++.+++..........                  ....+.|++++...++. ..+.........             
T Consensus       133 ~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~-~~d~~~~~~~~~~~~~~~~~~~~~~  211 (719)
T 1z68_A          133 YLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYA-EFNDTDIPVIAYSYYGDEQYPRTIN  211 (719)
T ss_dssp             EEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEE-EEECTTSCEEEEEECCSSSSCEEEE
T ss_pred             EEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEE-EECCCCCceEEeeccCCCCCcccee
Confidence            9999988775433211111                  11356666665433322 222111110000             


Q ss_pred             e------ecCCCceEEEcCCCceeec----ccceEEEecCCCCEeEEEEeCCC-eEEEEeCC----CeEEEEE----CCC
Q 011126          358 L------RKSSDLTCVVLPPKVFRLL----EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD----KTVRLWQ----VGI  418 (493)
Q Consensus       358 ~------~~s~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~D----g~V~lWd----~~~  418 (493)
                      +      .......+.+|+.......    -.....+.+|...+..++|+|++ ++++....    ..|.+||    +.+
T Consensus       212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~  291 (719)
T 1z68_A          212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT  291 (719)
T ss_dssp             EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS
T ss_pred             ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC
Confidence            0      0012225556655432210    00001234688889999999999 55554322    2488899    877


Q ss_pred             CcEEEEe-----cCCCcEE-----EEEEccCCCCEEE--EEeCCC--eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCE
Q 011126          419 DRCLRVF-----SHNNYVT-----SVAFNPVDDNYFI--SGSIDG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKV  484 (493)
Q Consensus       419 ~~~~~~~-----~h~~~V~-----~v~fsp~d~~~l~--sgs~Dg--~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~  484 (493)
                      +++...+     .|...+.     .+.|+| +++.|+  +...+|  .|++||+.+++...+..+...+..+.+. +|+.
T Consensus       292 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~  369 (719)
T 1z68_A          292 WDCPKTQEHIEESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDS  369 (719)
T ss_dssp             EECCGGGEEEEECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSE
T ss_pred             CceEEEEecccccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCE
Confidence            7766555     3666666     889999 888544  344555  6888888888766666666678888877 8888


Q ss_pred             EEEeecC
Q 011126          485 RQNSACN  491 (493)
Q Consensus       485 l~s~s~d  491 (493)
                      |+..+.+
T Consensus       370 i~~~~~~  376 (719)
T 1z68_A          370 LFYSSNE  376 (719)
T ss_dssp             EEEEESC
T ss_pred             EEEEEec
Confidence            7766643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.46  E-value=2.1e-11  Score=117.82  Aligned_cols=233  Identities=12%  Similarity=0.063  Sum_probs=150.0

Q ss_pred             cccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126          238 HGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       238 ~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      ...++|+|+|+ +++++..++.|.+|+....   .      +.+..+...+.+|+|+|+|+++++...++.|.+||..++
T Consensus        30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~------~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g  100 (296)
T 3e5z_A           30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---L------SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG  100 (296)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---E------EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred             ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---e------EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence            34589999998 7888889999999998754   1      134456778999999999998877777789999999877


Q ss_pred             eeeeeeecc----CCCCceEEEeeCCCCceeeeeccCcccc---ceeeeecCCCceEEEcCCCceeecccceEEEecCCC
Q 011126          317 ERLDGFDVQ----DTDPSCLYFTINHLSQLIPIDVDKEKID---KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (493)
Q Consensus       317 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (493)
                      +........    ...+..+.+.++  ..++..+.......   ............++.++..      ..+..+..+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~------g~~~~~~~~~~  172 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD------GTLSAPIRDRV  172 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECTT--SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT------SCEEEEECCCS
T ss_pred             cEEEEeeccCCCCCCCCCCEEECCC--CCEEEECCccccccccccccccccCCCcEEEEECCC------CCEEEeecCCC
Confidence            654332211    112223333332  22332211000000   0000000112234444432      11333455667


Q ss_pred             CEeEEEEeCCC-eEEEEeCCCeEEEEECC-CCcE---EEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVG-IDRC---LRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~-~~~~---~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      ....++|+|++ .|++.+.++.|.+|++. .+..   ...+. +...+.++++++ +++++++.  ++.|.+||.....+
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~g~~~  249 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPDGDEL  249 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTTSCEE
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCCCCEE
Confidence            78899999999 66777888999999997 4544   23332 455677899999 89877776  88999999974333


Q ss_pred             EEecCCCCCeEEEEE-ccCCCEEEEeecC
Q 011126          464 VDYTDIREIVSAVCY-CPDGKVRQNSACN  491 (493)
Q Consensus       464 ~~~~~~~~~I~sv~~-spdG~~l~s~s~d  491 (493)
                      ..+..+.. +++++| .|+++.|++++.+
T Consensus       250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t~~  277 (296)
T 3e5z_A          250 GRVLTPQT-TSNLCFGGPEGRTLYMTVST  277 (296)
T ss_dssp             EEEECSSC-CCEEEEESTTSCEEEEEETT
T ss_pred             EEEECCCC-ceeEEEECCCCCEEEEEcCC
Confidence            34555555 899999 6999988887754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.43  E-value=1.5e-10  Score=113.41  Aligned_cols=232  Identities=10%  Similarity=0.062  Sum_probs=144.0

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC----CcEEEEe
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----GTVRVWK  312 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~V~iWd  312 (493)
                      ....++|+|+|.+++++..++.|.+|+.......  .     .+..+...+.+|+|+|+|+++++...+    +.|.+||
T Consensus        46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~--~-----~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK--R-----PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--E-----EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE--E-----EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence            3456889999998888888999999998654321  1     122456789999999999988877666    6899999


Q ss_pred             cCCCeeeeeeecc--CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          313 VIEHERLDGFDVQ--DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       313 l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      ..++.....+...  ...+..+.+.+  ...++.......        .......+..++....     .+..+..+...
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~--------~~~~~~~l~~~~~~~~-----~~~~~~~~~~~  183 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAYCIDDMVFDS--KGGFYFTDFRGY--------STNPLGGVYYVSPDFR-----TVTPIIQNISV  183 (333)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECT--TSCEEEEECCCB--------TTBCCEEEEEECTTSC-----CEEEEEEEESS
T ss_pred             CCCCEEEEEEccCccCCcccceEECC--CCCEEEEecccc--------ccCCCceEEEEeCCCC-----EEEEeecCCCc
Confidence            8877644222211  11122223322  222222221100        0011234444443221     11222223345


Q ss_pred             EeEEEEeCCC-eE-EEEeCCCeEEEEECCC-CcEEEEe--------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          391 VLDLSWSKNG-FL-LSSSADKTVRLWQVGI-DRCLRVF--------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       391 V~~l~~sp~g-~l-~sgs~Dg~V~lWd~~~-~~~~~~~--------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      +..++|+|+| .| ++...++.|.+||+.+ +..+..+        .....+..+++++ +++++++...++.|.+||..
T Consensus       184 ~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          184 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECTT
T ss_pred             ccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECC-CCCEEEEEcCCCEEEEECCC
Confidence            7899999998 44 4556688999999964 3322211        1124788999999 89988888888999999995


Q ss_pred             CCeEEEecCCCC------CeEEEEEccCCCEEEEeecC
Q 011126          460 RCQVVDYTDIRE------IVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       460 ~~~~~~~~~~~~------~I~sv~~spdG~~l~s~s~d  491 (493)
                      ...+..+.....      .+.+++|+|||+.|++++.+
T Consensus       263 g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          263 GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            433333332222      68999999999877766543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.41  E-value=1.6e-10  Score=113.70  Aligned_cols=227  Identities=11%  Similarity=0.083  Sum_probs=148.8

Q ss_pred             cccccceeccCCCeEEeeecC------------------------CeEEEEECCCccccccccccceee-ecccCCEEEE
Q 011126          236 DRHGSATLKPGDHELTLGQRM------------------------RRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTM  290 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~d------------------------g~V~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l  290 (493)
                      ..+..++++|+|+++++...+                        ++|.+||.......       ..+ .++-.....|
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------~~~~~~~~~~p~gi   96 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-------QSSGKNLFYLPHGL   96 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE-------EEECTTTCSSEEEE
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE-------eccCCCccCCceEE
Confidence            445669999999999888777                        47999987644321       111 2445678999


Q ss_pred             EEccCCCEEEEEECCCcEEEEecCCCe-eeeeeec---------cCCCCceEEEeeCCCCceeeeeccCccccceeeeec
Q 011126          291 KFSLDGQYLASGGEDGTVRVWKVIEHE-RLDGFDV---------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (493)
Q Consensus       291 ~fspdg~~Lasgs~Dg~V~iWdl~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (493)
                      +++|+|+++++...++.|++|+..... .+..+..         ....+..+.+.+. ...++..+.             
T Consensus        97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~-------------  162 (329)
T 3fvz_A           97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDG-------------  162 (329)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEEC-------------
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeC-------------
Confidence            999999988888889999999975432 3333321         1111222333221 222222221             


Q ss_pred             CCCceEEEcCCCceeecccceEEEe----------cCCCCEeEEEEeCC-C-eEEEEeCCCeEEEEECCCCcEEEEec--
Q 011126          361 SSDLTCVVLPPKVFRLLEKPLHEFQ----------GHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS--  426 (493)
Q Consensus       361 s~~~~~~~~~~~~~~~~~~~~~~~~----------~h~~~V~~l~~sp~-g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--  426 (493)
                      .....+.+++...     +.+..+.          ++......|+++|+ + ++++...++.|++||..+++.+..+.  
T Consensus       163 ~~~~~I~~~~~~g-----~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~  237 (329)
T 3fvz_A          163 YCNSRIVQFSPSG-----KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA  237 (329)
T ss_dssp             SSCCEEEEECTTS-----CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred             CCCCeEEEEcCCC-----CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence            1233444444221     1222222          12344889999998 6 77788889999999999899988884  


Q ss_pred             -CCCcEEEEEEccCCCCEEEEEe-------CCCeEEEEeCCCCeEEEe----cCCCCCeEEEEEccCCCEEEEeec
Q 011126          427 -HNNYVTSVAFNPVDDNYFISGS-------IDGKVRIWEVRRCQVVDY----TDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       427 -h~~~V~~v~fsp~d~~~l~sgs-------~Dg~V~IWdl~~~~~~~~----~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                       +...+..++|+|  +..+++.+       .+.+|++||+.+++++..    ..+...+..|+++|+|.++++...
T Consensus       238 ~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~  311 (329)
T 3fvz_A          238 SFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAH  311 (329)
T ss_dssp             TTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESS
T ss_pred             ccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECC
Confidence             667888999998  33333333       345899999999998865    356667999999999966665543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.41  E-value=9.8e-13  Score=144.24  Aligned_cols=222  Identities=9%  Similarity=0.054  Sum_probs=122.1

Q ss_pred             ceeccCCCeEEeeecC---------CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126          241 ATLKPGDHELTLGQRM---------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (493)
Q Consensus       241 ~~fsp~g~~lasgs~d---------g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW  311 (493)
                      .+|+|||++|+.++.+         +.+.+||+.+....        .+..|.+.+...+|||||+.||.+. |+.|++|
T Consensus        67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~--------~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~  137 (740)
T 4a5s_A           67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI--------TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVK  137 (740)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC--------CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEE
T ss_pred             eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE--------EcccCCCcceeeEECCCCCEEEEEE-CCeEEEE
Confidence            6789999999998876         56679999865421        2456778899999999999999884 6899999


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcC------CCceeecccceEEEe
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP------PKVFRLLEKPLHEFQ  385 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~------~~~~~~~~~~~~~~~  385 (493)
                      ++.+++..+. ........ +..  .....+.    ..........+.-+.|+..+.+.      ...+.+.     ...
T Consensus       138 ~~~~~~~~~l-t~~g~~~~-~~~--g~~~~v~----~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~-----~~~  204 (740)
T 4a5s_A          138 IEPNLPSYRI-TWTGKEDI-IYN--GITDWVY----EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYS-----FYS  204 (740)
T ss_dssp             SSTTSCCEEC-CSCCBTTT-EEE--SBCCHHH----HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEE-----ECC
T ss_pred             ECCCCceEEE-cCCCCccc-eec--Ccccccc----cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEE-----eec
Confidence            9987764321 11100000 000  0000000    00000000000111111111110      0001000     000


Q ss_pred             ---cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCC---C---cEEEEec------CCCcEEEEEEccCCCCEEEEEeC
Q 011126          386 ---GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---D---RCLRVFS------HNNYVTSVAFNPVDDNYFISGSI  449 (493)
Q Consensus       386 ---~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~---~---~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~  449 (493)
                         ++...+..+.+.+.| .    ....+|++||+.+   +   +......      |...+..++|+| |+++++....
T Consensus       205 ~~~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~  279 (740)
T 4a5s_A          205 DESLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLR  279 (740)
T ss_dssp             STTCSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEE
T ss_pred             CCCCCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeC
Confidence               022233334443333 1    1112689999998   7   4444332      778899999999 8987665543


Q ss_pred             ----CCeEEEEeCCCCe----EE---Ee--cCCCCCeE-----EEEEccCCCEEE-Eee
Q 011126          450 ----DGKVRIWEVRRCQ----VV---DY--TDIREIVS-----AVCYCPDGKVRQ-NSA  489 (493)
Q Consensus       450 ----Dg~V~IWdl~~~~----~~---~~--~~~~~~I~-----sv~~spdG~~l~-s~s  489 (493)
                          +..|++||+.+++    ..   .+  ..+...|.     .+.|+|||+.++ ..+
T Consensus       280 r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s  338 (740)
T 4a5s_A          280 RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIIS  338 (740)
T ss_dssp             SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEE
T ss_pred             CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEE
Confidence                3479999999876    22   11  33443333     688999999877 443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.41  E-value=5.7e-12  Score=126.21  Aligned_cols=237  Identities=8%  Similarity=-0.009  Sum_probs=139.5

Q ss_pred             ccccceeccCCCeEEeeecC---CeEEEEECCCccccccccccceeeecccCC-EEEEEEccCCCEEEEEECCCcEEEEe
Q 011126          237 RHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSLDGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fspdg~~Lasgs~Dg~V~iWd  312 (493)
                      .+..++|+|+|++|+.....   ..|.+|+.......        .+..+... +..+.|+|||++|+.++.++.|++||
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~--------~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d  108 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV--------QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVD  108 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE--------ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE--------EeecCCCCccccceECCCCCEEEEEEcCCcEEEEE
Confidence            35568999999998876543   46888887654321        11222223 23378999999999999999999999


Q ss_pred             cCCCeeeeeeeccCCCCce-EEEeeCCCCceee-----eeccCcc--ccceeeeecCCCceEEEcCCCceeecccceEEE
Q 011126          313 VIEHERLDGFDVQDTDPSC-LYFTINHLSQLIP-----IDVDKEK--IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (493)
Q Consensus       313 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  384 (493)
                      +.+++.......+...... ..+..........     ..+....  +.............+.+++....     ....+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g-----~~~~~  183 (396)
T 3c5m_A          109 LETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG-----ELEVI  183 (396)
T ss_dssp             TTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC-----CEEEE
T ss_pred             CCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC-----cEEee
Confidence            9888765444433220000 0000000000000     0000000  00000001133445566654432     12333


Q ss_pred             ecCCCCEeEEEEeC-CC-eEEEEeCC------CeEEEEECCCCcEEEEecC--CCcEEEEEEccCCCCEEEEEeCC----
Q 011126          385 QGHSSEVLDLSWSK-NG-FLLSSSAD------KTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSID----  450 (493)
Q Consensus       385 ~~h~~~V~~l~~sp-~g-~l~sgs~D------g~V~lWd~~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~D----  450 (493)
                      ..+...+..+.|+| ++ .|+..+.+      ..|.+||+..+.......+  ...+..+.|+| ++++|+.++.+    
T Consensus       184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~  262 (396)
T 3c5m_A          184 HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQT  262 (396)
T ss_dssp             EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTC
T ss_pred             ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC-CCCEEEEEecCCCCc
Confidence            35677889999999 67 56655543      4688899876654443333  23688899999 99987776554    


Q ss_pred             -CeEEEEeCCCCeEEEecCCCCCeEEEEEcc-CCCEEEEee
Q 011126          451 -GKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKVRQNSA  489 (493)
Q Consensus       451 -g~V~IWdl~~~~~~~~~~~~~~I~sv~~sp-dG~~l~s~s  489 (493)
                       +.|++||+.+++...+..... .. +.|+| ||++++.++
T Consensus       263 ~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          263 DRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             CEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEE
T ss_pred             cceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEec
Confidence             459999999887654433222 33 89999 999888754

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.40  E-value=9.2e-12  Score=124.86  Aligned_cols=177  Identities=8%  Similarity=0.027  Sum_probs=130.6

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCcccccc----ccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~----~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd  312 (493)
                      .++.+++++...++++|+.++ ++||+++.......    .+.. .....+.+ |+.|+|  |+.+|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            456699999999999999875 56698754331000    0111 12334667 999999  89999998 889999999


Q ss_pred             cCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (493)
Q Consensus       313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (493)
                      +.+......                                                              ...|...+.
T Consensus       113 v~sl~~~~~--------------------------------------------------------------~~~~~~~v~  130 (388)
T 1xip_A          113 LEELSEFRT--------------------------------------------------------------VTSFEKPVF  130 (388)
T ss_dssp             SSSTTCEEE--------------------------------------------------------------EEECSSCEE
T ss_pred             chhhhccCc--------------------------------------------------------------cceeeccee
Confidence            876542111                                                              122344566


Q ss_pred             EEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE--E-Ee---
Q 011126          393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--V-DY---  466 (493)
Q Consensus       393 ~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~--~-~~---  466 (493)
                      ++.+.+. .++++..||.|.+||+..+....   +...|+|++|+| +|  ++.|..||++++|+...+++  . .+   
T Consensus       131 ~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~P  203 (388)
T 1xip_A          131 QLKNVNN-TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLP  203 (388)
T ss_dssp             EEEECSS-EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred             eEEecCC-CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCC
Confidence            6666554 38888999999999999887654   456899999999 77  78899999999999988774  3 23   


Q ss_pred             ---c---CCCCCeEEEEEccCCCEEEEe
Q 011126          467 ---T---DIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       467 ---~---~~~~~I~sv~~spdG~~l~s~  488 (493)
                         .   +|...|.+|+|.++++++++=
T Consensus       204 p~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          204 SELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cccccccCCCeeEEEEEEecCCeEEEEE
Confidence               2   367889999999999998863

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.37  E-value=1e-10  Score=116.71  Aligned_cols=231  Identities=11%  Similarity=0.100  Sum_probs=131.1

Q ss_pred             EEeeecC--CeEEEEECCCccccccccccceee-ecccCCEEEEEEccCCCEEEEEECCCcEEEEecC-CCeeeeeeecc
Q 011126          250 LTLGQRM--RRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDVQ  325 (493)
Q Consensus       250 lasgs~d--g~V~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~-~~~~~~~~~~~  325 (493)
                      +++|+..  +.|.+|++......+..+   ... .++...+..++|+|+|++|++++.+ .|.+|++. +++........
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~---~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~   80 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLI---KRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP   80 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEE---EEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEe---eEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee
Confidence            4555542  568887764322222211   111 1234467889999999999999988 99999997 77654332211


Q ss_pred             C-CCCceEEEeeCCCCceeeeeccCccccceeeeec---CCCceEEEcCCCc-eeecccceEEEe-cCCCCEeEEEEeCC
Q 011126          326 D-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK---SSDLTCVVLPPKV-FRLLEKPLHEFQ-GHSSEVLDLSWSKN  399 (493)
Q Consensus       326 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~-~~~~~~~~~~~~-~h~~~V~~l~~sp~  399 (493)
                      . ..+..+.+.+++.. ++.+..+..+.   .....   ..++.+.+|+... ..+. ..+..+. .+...+.+++|+|+
T Consensus        81 ~~g~~~~~~~spdg~~-l~~~~~~~~~~---~~~~~~~~~~~g~v~v~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~spd  155 (365)
T 1jof_A           81 IGGHPRANDADTNTRA-IFLLAAKQPPY---AVYANPFYKFAGYGNVFSVSETGKLE-KNVQNYEYQENTGIHGMVFDPT  155 (365)
T ss_dssp             CCSSGGGGCTTSCCEE-EEEEECSSTTC---CEEEEEESSSCCEEEEEEECTTCCEE-EEEEEEECCTTCCEEEEEECTT
T ss_pred             cCCCCccEEECCCCCE-EEEEEecCCcc---eeccceeecCCceEEEEccCCCCcCc-ceEeeEEeCCCCcceEEEECCC
Confidence            1 11222222222210 01111110000   00000   0233444443321 1110 1111111 25668999999999


Q ss_pred             C-eEEEEe-CCCeEEEEECC-CCcEE--EEec---CCCcEEEEEEccCCCCEEEEEeC-CCeEEEEeCC--CCeEE----
Q 011126          400 G-FLLSSS-ADKTVRLWQVG-IDRCL--RVFS---HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVR--RCQVV----  464 (493)
Q Consensus       400 g-~l~sgs-~Dg~V~lWd~~-~~~~~--~~~~---h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~IWdl~--~~~~~----  464 (493)
                      | +|+++. .++.|++||+. +++..  ..+.   |...+..++|+| ++++|++++. ++.|.+|++.  ++++.    
T Consensus       156 G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~  234 (365)
T 1jof_A          156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHH  234 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccc
Confidence            9 676665 46899999998 66653  2332   467799999999 9998887775 7899999765  55532    


Q ss_pred             --Eec-----CCCC------CeEEEE-EccCCCEEEEeec
Q 011126          465 --DYT-----DIRE------IVSAVC-YCPDGKVRQNSAC  490 (493)
Q Consensus       465 --~~~-----~~~~------~I~sv~-~spdG~~l~s~s~  490 (493)
                        ...     ++..      .+..++ |+|||++|+++..
T Consensus       235 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             eEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence              111     1121      488999 9999999887653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.36  E-value=1.7e-10  Score=113.55  Aligned_cols=218  Identities=9%  Similarity=0.100  Sum_probs=136.4

Q ss_pred             ccccceeccCCCeEEeeecC---Ce--EEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC------
Q 011126          237 RHGSATLKPGDHELTLGQRM---RR--VRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED------  305 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~d---g~--V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D------  305 (493)
                      .+...+|+|+|++||..+.+   +.  |.+|++......        .+..+.. +..+.|+|||+.|+.++.+      
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~--------~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~  130 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK--------KILEAKN-IRSLEWNEDSRKLLIVGFKRREDED  130 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE--------EEEEESE-EEEEEECTTSSEEEEEEECCCC---
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE--------EEEcCCC-ccceeECCCCCEEEEEEccCCCcCC
Confidence            34558999999999987654   34  677776643211        1222334 9999999999999887642      


Q ss_pred             ---------------------CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc
Q 011126          306 ---------------------GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (493)
Q Consensus       306 ---------------------g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  364 (493)
                                           ..|++||+.+++.+..+.. . ....+.+.+++  .++..........      .....
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~------~~~~~  200 (347)
T 2gop_A          131 FIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQ------YFKFW  200 (347)
T ss_dssp             ------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCC------SSCCE
T ss_pred             cEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEeccccccc------ccccc
Confidence                                 5699999988876444444 2 55566666554  2222211110000      00011


Q ss_pred             eEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCC--------CeEEEEECCCCcEEEEec-CCCcEEE-
Q 011126          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD--------KTVRLWQVGIDRCLRVFS-HNNYVTS-  433 (493)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~D--------g~V~lWd~~~~~~~~~~~-h~~~V~~-  433 (493)
                      .+..++       ......+..+ ..+..+  +|+| +|+.++.+        ..|.+||  +++...... +...+.. 
T Consensus       201 ~l~~~d-------~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~  268 (347)
T 2gop_A          201 DIYIWE-------DGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQA  268 (347)
T ss_dssp             EEEEEE-------TTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEE
T ss_pred             cEEEeC-------CCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCc
Confidence            233332       1112223333 444444  9999 77666644        4688888  555544444 5677886 


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +.|+  ++ ++++++.++.++|| +.+++...+..+...|.+++|+|  .++++++.+
T Consensus       269 ~~~s--dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~  320 (347)
T 2gop_A          269 KIKD--GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETA  320 (347)
T ss_dssp             EEET--TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECS
T ss_pred             cEEc--Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCC
Confidence            8997  56 89999999999999 88777766666677899999999  566665543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.36  E-value=7e-11  Score=118.20  Aligned_cols=227  Identities=9%  Similarity=-0.016  Sum_probs=137.8

Q ss_pred             cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEE--EccCCCEEEEE---------------
Q 011126          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK--FSLDGQYLASG---------------  302 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~--fspdg~~Lasg---------------  302 (493)
                      ...|+|+|+.|+.++.++.|++|++.......       .+..+...+....  ++|++++|+..               
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~-------~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~  157 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENV-------VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK  157 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEE-------EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCccee-------eeechhhcccccceeECCCCCeeccccccCcccccccccch
Confidence            46899999999999999999999998654221       2334555554444  48999988743               


Q ss_pred             -------ECCCcEEEEecCCCeeeeeeeccCCCCceEEEee-CCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126          303 -------GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI-NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (493)
Q Consensus       303 -------s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (493)
                             ..+..|.+||+.+++..... ..........+++ ++.. ++........         .....+.+++..  
T Consensus       158 ~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~-l~~~~~~~~~---------~~~~~l~~~d~~--  224 (388)
T 3pe7_A          158 FHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDST-VAFCHEGPHD---------LVDARMWLINED--  224 (388)
T ss_dssp             HHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEE-EEEEECSCTT---------TSSCSEEEEETT--
T ss_pred             hhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCE-EEEEEecCCC---------CCcceEEEEeCC--
Confidence                   24467999999888654333 2233334445554 3321 2111111000         012233333322  


Q ss_pred             eecccceEEEecCC--CCEeEEEEeCCC-eEEEEe-C-CC---eEEEEECCCCcEEEEecCCCc------EEEEEEccCC
Q 011126          375 RLLEKPLHEFQGHS--SEVLDLSWSKNG-FLLSSS-A-DK---TVRLWQVGIDRCLRVFSHNNY------VTSVAFNPVD  440 (493)
Q Consensus       375 ~~~~~~~~~~~~h~--~~V~~l~~sp~g-~l~sgs-~-Dg---~V~lWd~~~~~~~~~~~h~~~------V~~v~fsp~d  440 (493)
                         ......+..+.  ..+..++|+|+| .|+..+ . ++   .|.+||+.+++..........      ...+.|+| +
T Consensus       225 ---~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp-d  300 (388)
T 3pe7_A          225 ---GTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG-D  300 (388)
T ss_dssp             ---SCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE-E
T ss_pred             ---CCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc-C
Confidence               11223333343  257788999999 554433 2 22   399999998875433222110      11237999 8


Q ss_pred             CCEEEEE---------eCCCeEEEEeCCCCeEEEecCCCC-----------CeEEEEEccCCCEEEEeec
Q 011126          441 DNYFISG---------SIDGKVRIWEVRRCQVVDYTDIRE-----------IVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       441 ~~~l~sg---------s~Dg~V~IWdl~~~~~~~~~~~~~-----------~I~sv~~spdG~~l~s~s~  490 (493)
                      ++.|+..         ..+..|++||+.++++..+..+..           .+..++|+|||+.|+.++.
T Consensus       301 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          301 GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             ECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             CCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence            8877754         456789999999998876666655           5788999999999887764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.33  E-value=2.8e-11  Score=130.49  Aligned_cols=183  Identities=12%  Similarity=0.117  Sum_probs=128.7

Q ss_pred             ccccceeccCCCeEEeeecC----------CeEEEEECCCcc----ccccccccceeee-cccCCEEEEEEccCCCEEEE
Q 011126          237 RHGSATLKPGDHELTLGQRM----------RRVRVHPVKKQS----RELSSLYTGQEFL-AHEGSILTMKFSLDGQYLAS  301 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~d----------g~V~vwd~~~~~----~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Las  301 (493)
                      .+..++|+|||+.|++++.+          ..|++|++....    ...      +.+. .+...+..+.|+|||++|+.
T Consensus       131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~SpDG~~la~  204 (662)
T 3azo_A          131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV------RELSDDAHRFVTGPRLSPDGRQAVW  204 (662)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS------EESSCSCSSEECCCEECTTSSEEEE
T ss_pred             cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce------eEEEecCCCcccCceECCCCCEEEE
Confidence            44568999999999998876          589999987621    111      1233 45677888999999999998


Q ss_pred             EECCC--------cEEEEecC-CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCC
Q 011126          302 GGEDG--------TVRVWKVI-EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK  372 (493)
Q Consensus       302 gs~Dg--------~V~iWdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  372 (493)
                      ++.++        .|++||+. ++....                                                    
T Consensus       205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~~----------------------------------------------------  232 (662)
T 3azo_A          205 LAWDHPRMPWEGTELKTARVTEDGRFAD----------------------------------------------------  232 (662)
T ss_dssp             EEECTTCCTTTCEEEEEEEECTTSCEEE----------------------------------------------------
T ss_pred             EECCCCCCCCCCcEEEEEEECCCCcccc----------------------------------------------------
Confidence            87553        68888886 341100                                                    


Q ss_pred             ceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCC--eEEEEECCCCcEEEEecCCCc---------EEEEEEccCC
Q 011126          373 VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK--TVRLWQVGIDRCLRVFSHNNY---------VTSVAFNPVD  440 (493)
Q Consensus       373 ~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg--~V~lWd~~~~~~~~~~~h~~~---------V~~v~fsp~d  440 (493)
                             ......+|...+..++|+|+| +++++..++  .|.+||+.+++......+...         +..++|+| +
T Consensus       233 -------~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~  304 (662)
T 3azo_A          233 -------TRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-N  304 (662)
T ss_dssp             -------EEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-T
T ss_pred             -------cEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-C
Confidence                   011123456778899999999 778888888  566667667766554443221         56789999 8


Q ss_pred             CCEEEEEeCCCeEEEE--eCCCCeEEEecCCCCCeEEEEEccCCCEEEE
Q 011126          441 DNYFISGSIDGKVRIW--EVRRCQVVDYTDIREIVSAVCYCPDGKVRQN  487 (493)
Q Consensus       441 ~~~l~sgs~Dg~V~IW--dl~~~~~~~~~~~~~~I~sv~~spdG~~l~s  487 (493)
                      +.+++++.. +.++||  |+.++++..+..+...+..+ ++++++.++.
T Consensus       305 ~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~s~~~~~~~~  351 (662)
T 3azo_A          305 GLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAAT-LTVSGTRAVG  351 (662)
T ss_dssp             SCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEE-EEEETTEEEE
T ss_pred             CEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEE-EecCCCEEEE
Confidence            999999998 999999  77777776777777777766 2566665443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.30  E-value=2.4e-11  Score=130.94  Aligned_cols=193  Identities=9%  Similarity=0.003  Sum_probs=130.2

Q ss_pred             eeecccccceeccCCCeEEee--ecCCeEEEEECCCccccccccccceeeecccCCEE---------EEEEc--cCCCE-
Q 011126          233 RIIDRHGSATLKPGDHELTLG--QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSIL---------TMKFS--LDGQY-  298 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasg--s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~---------~l~fs--pdg~~-  298 (493)
                      .+...+..+++++++-+++..  ..+++..||.......       .+.+..|...+.         ...|+  |||++ 
T Consensus        21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~   93 (662)
T 3azo_A           21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA-------EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL   93 (662)
T ss_dssp             HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC-------EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred             hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC-------cceeCCCCccccccccccCCccceeeeecCCCeE
Confidence            344556668889887677776  5688999998632211       123445555555         56666  99998 


Q ss_pred             EEEEEC-CCcEEEEecC--C-CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126          299 LASGGE-DGTVRVWKVI--E-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (493)
Q Consensus       299 Lasgs~-Dg~V~iWdl~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (493)
                      |+.++. +..|.+|++.  . +. ...+...                                                 
T Consensus        94 la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~-------------------------------------------------  123 (662)
T 3azo_A           94 LVFTHFGDQRLYAFEPDAPGGAV-PRPLTPV-------------------------------------------------  123 (662)
T ss_dssp             EEEEBTTTCCEEEECTTSTTCCC-CEECSCC-------------------------------------------------
T ss_pred             EEEEECCCCeEEEEcCCCCCCCC-CEeccCC-------------------------------------------------
Confidence            776554 4455555543  1 21 1111000                                                 


Q ss_pred             eecccceEEEecCCCCEeEEEEeCCC-eEEEEeCC----------CeEEEEECCC------CcEEEEe-cCCCcEEEEEE
Q 011126          375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD----------KTVRLWQVGI------DRCLRVF-SHNNYVTSVAF  436 (493)
Q Consensus       375 ~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~D----------g~V~lWd~~~------~~~~~~~-~h~~~V~~v~f  436 (493)
                              ....|...+..++|+|+| .|+.++.+          ..|++||+.+      +...... .+...+..++|
T Consensus       124 --------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  195 (662)
T 3azo_A          124 --------SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRL  195 (662)
T ss_dssp             --------CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEE
T ss_pred             --------ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceE
Confidence                    000145567899999999 88887776          5899999998      6665555 56678899999


Q ss_pred             ccCCCCEEEEEeCC--------CeEEEEeCC-CC---eEEEec-CCCCCeEEEEEccCCCEEEEeecC
Q 011126          437 NPVDDNYFISGSID--------GKVRIWEVR-RC---QVVDYT-DIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       437 sp~d~~~l~sgs~D--------g~V~IWdl~-~~---~~~~~~-~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +| |+++|+.++.+        ..|++||+. ++   +...+. .+...+..+.|+|||++++++..+
T Consensus       196 Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~  262 (662)
T 3azo_A          196 SP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRT  262 (662)
T ss_dssp             CT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTT
T ss_pred             CC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCC
Confidence            99 99999988755        379999999 57   555444 346789999999999966665543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.29  E-value=3.3e-10  Score=108.84  Aligned_cols=212  Identities=11%  Similarity=0.035  Sum_probs=144.6

Q ss_pred             CCCeEEeeecCCeEEEEECCCccccccccccceeeeccc-CCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeec
Q 011126          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV  324 (493)
Q Consensus       246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~  324 (493)
                      .+++|++++.++.|.+||.++.+.. .      .+..|. ..+.++.++|+|++|+  +.++.|..||. +++.+..+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~-w------~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIV-W------EYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEE-E------EEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEE-E------EeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC
Confidence            4578999999999999998655432 1      233444 4688999999999888  45778999999 8888888876


Q ss_pred             cCC-CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe------cCCCCEeEEEEe
Q 011126          325 QDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ------GHSSEVLDLSWS  397 (493)
Q Consensus       325 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~V~~l~~s  397 (493)
                      +.. ......+.  ....++.....             ....++.++...     +.+..+.      ++......+++.
T Consensus        74 ~~~~~~~~~~~~--~dG~~lv~~~~-------------~~~~v~~vd~~G-----k~l~~~~~~~~~~~~~~~~~~v~~~  133 (276)
T 3no2_A           74 PAGCEMQTARIL--PDGNALVAWCG-------------HPSTILEVNMKG-----EVLSKTEFETGIERPHAQFRQINKN  133 (276)
T ss_dssp             CTTCEEEEEEEC--TTSCEEEEEES-------------TTEEEEEECTTS-----CEEEEEEECCSCSSGGGSCSCCEEC
T ss_pred             CCCccccccEEC--CCCCEEEEecC-------------CCCEEEEEeCCC-----CEEEEEeccCCCCcccccccCceEC
Confidence            421 12222222  22222222111             022233332211     1111111      222345566788


Q ss_pred             CCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCC------
Q 011126          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDI------  469 (493)
Q Consensus       398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~------  469 (493)
                      ++| ++++...++.|..||.. ++.+..+.....+.++.+.| ++++++++..+++|..+|..+++++. +...      
T Consensus       134 ~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~  211 (276)
T 3no2_A          134 KKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQ  211 (276)
T ss_dssp             TTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred             CCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence            888 88999999999999998 99999988666677888899 99999999989999999999998874 3211      


Q ss_pred             CCCeEEEEEccCCCEEEEee
Q 011126          470 REIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       470 ~~~I~sv~~spdG~~l~s~s  489 (493)
                      -..++.++..++|.++++..
T Consensus       212 l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          212 LFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             CSEEEEEEECTTSCEEEEEE
T ss_pred             ccccccceEcCCCCEEEEec
Confidence            12378999999999998874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.28  E-value=4e-11  Score=119.96  Aligned_cols=226  Identities=5%  Similarity=-0.056  Sum_probs=134.0

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEE-------------------EEEccCCCEEEE
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-------------------MKFSLDGQYLAS  301 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~-------------------l~fspdg~~Las  301 (493)
                      ..|+|+|++|+..+.++.|++|++.......       .+..+......                   +.|+|+++.++.
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~-------~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~  158 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQV-------IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKF  158 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEE-------EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEE-------EEecccccCCCCCEEEeccCCccccccccccccCCCCcceee
Confidence            6799999999999999999999987644211       11222222222                   356777776655


Q ss_pred             E-----ECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126          302 G-----GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (493)
Q Consensus       302 g-----s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  376 (493)
                      +     ..+..|++||+.+++...... .........+.+.....++........         .....+.+++...   
T Consensus       159 ~~~~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~---------~~~~~l~~~d~~~---  225 (396)
T 3c5m_A          159 AEFYHTNPTCRLIKVDIETGELEVIHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHD---------LVDARMWLVNEDG---  225 (396)
T ss_dssp             HHHHHTCCCEEEEEEETTTCCEEEEEE-ESSCEEEEEEETTEEEEEEEEECSCSS---------SCSCCCEEEETTS---
T ss_pred             eeeccCCCcceEEEEECCCCcEEeecc-CCcccccceECCCCCCEEEEEecCCCC---------CCCceEEEEECCC---
Confidence            4     356789999998877544332 222333344444111112221110000         0002233333211   


Q ss_pred             cccceEEEecC--CCCEeEEEEeCCC-eEEEEeCC-----CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe
Q 011126          377 LEKPLHEFQGH--SSEVLDLSWSKNG-FLLSSSAD-----KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS  448 (493)
Q Consensus       377 ~~~~~~~~~~h--~~~V~~l~~sp~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs  448 (493)
                        .....+..+  ...+..++|+|+| +|+.++.+     +.|++||+.+++......... .. +.|+|.++++|++++
T Consensus       226 --~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          226 --SNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             --CCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEE
T ss_pred             --CceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEec
Confidence              112222222  2357889999999 66665443     459999999887655443332 33 889875677877754


Q ss_pred             ----------------CCCeEEEEeCCCCeEEEecCCCC-----------CeEEEEEccCCCEEEEeec
Q 011126          449 ----------------IDGKVRIWEVRRCQVVDYTDIRE-----------IVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       449 ----------------~Dg~V~IWdl~~~~~~~~~~~~~-----------~I~sv~~spdG~~l~s~s~  490 (493)
                                      .++.|++||+.+++...+..+..           .+..++|+|||+.|+..+.
T Consensus       302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~  370 (396)
T 3c5m_A          302 CDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD  370 (396)
T ss_dssp             CCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             CCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence                            34789999999887655544443           2567899999999887764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.25  E-value=7.2e-10  Score=104.94  Aligned_cols=225  Identities=8%  Similarity=-0.043  Sum_probs=139.5

Q ss_pred             ccccceeccCCCeEE-eeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126          237 RHGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       237 ~~~~~~fsp~g~~la-sgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~  315 (493)
                      ....++++++|.+++ +...++.|.+|+.........       ...+...+..|+++++|+++++.. ++.|.+||...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~   96 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS   96 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-------CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-------eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC
Confidence            344588999999777 557789999998754332111       012335678899999999666555 88999999865


Q ss_pred             CeeeeeeeccC-CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEE
Q 011126          316 HERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (493)
Q Consensus       316 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  394 (493)
                      .... .+.... ..+..+.+.+  ...++....              ....+..++......    ......+...+.+|
T Consensus        97 ~~~~-~~~~~~~~~p~~i~~~~--~g~l~v~~~--------------~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i  155 (270)
T 1rwi_B           97 NNQT-VLPFDGLNYPEGLAVDT--QGAVYVADR--------------GNNRVVKLAAGSKTQ----TVLPFTGLNDPDGV  155 (270)
T ss_dssp             SCCE-ECCCCSCSSEEEEEECT--TCCEEEEEG--------------GGTEEEEECTTCCSC----EECCCCSCCSCCCE
T ss_pred             ceEe-eeecCCcCCCcceEECC--CCCEEEEEC--------------CCCEEEEEECCCcee----EeeccccCCCceeE
Confidence            5432 221111 1222333322  222222221              223344443322110    11111233467889


Q ss_pred             EEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec-CCCC
Q 011126          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DIRE  471 (493)
Q Consensus       395 ~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~-~~~~  471 (493)
                      +++++| ++++...++.|.+||........... +...+.+|+++| ++.++++...++.|.+|+..+....... .+..
T Consensus       156 ~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~  234 (270)
T 1rwi_B          156 AVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN  234 (270)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCSCS
T ss_pred             EEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCCCC
Confidence            999998 66666678899999988766544322 446789999999 8888888878899999999876554432 2335


Q ss_pred             CeEEEEEccCCCEEEEeecC
Q 011126          472 IVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       472 ~I~sv~~spdG~~l~s~s~d  491 (493)
                      .+.+++++|+|+++++...+
T Consensus       235 ~p~~i~~~~~g~l~v~~~~~  254 (270)
T 1rwi_B          235 TPLAVAVDSDRTVYVADRGN  254 (270)
T ss_dssp             CEEEEEECTTCCEEEEEGGG
T ss_pred             CceeEEECCCCCEEEEECCC
Confidence            78999999999876665443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.25  E-value=3.5e-10  Score=110.87  Aligned_cols=181  Identities=10%  Similarity=0.066  Sum_probs=132.1

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~  315 (493)
                      ..+.+++|++++..++....++.+++|.-.          ....+..+...+.+++|+|+|++++++..++.|.+||..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~   75 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAE----------PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET   75 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECE----------EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             cccceeeecCCccceeEEeecccCcccccc----------eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence            345668899998888887888888888321          1123456677789999999999888888899999999876


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      ++....                                                              ...+...+.+++
T Consensus        76 ~~~~~~--------------------------------------------------------------~~~~~~~~~~i~   93 (333)
T 2dg1_A           76 KEIKRP--------------------------------------------------------------FVSHKANPAAIK   93 (333)
T ss_dssp             CCEEEE--------------------------------------------------------------EECSSSSEEEEE
T ss_pred             CcEEEE--------------------------------------------------------------eeCCCCCcceEE
Confidence            542110                                                              112346788999


Q ss_pred             EeCCC-eEEEEeCC----CeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeC------CCeEEEEeCCCC
Q 011126          396 WSKNG-FLLSSSAD----KTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSI------DGKVRIWEVRRC  461 (493)
Q Consensus       396 ~sp~g-~l~sgs~D----g~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~------Dg~V~IWdl~~~  461 (493)
                      ++|+| ++++...+    +.|.+||..++.....+.   +...++.++++| +++++++...      .+.|..||..++
T Consensus        94 ~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~  172 (333)
T 2dg1_A           94 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFR  172 (333)
T ss_dssp             ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred             ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCC
Confidence            99999 66665555    689999998877654432   456799999999 8988887654      366777887766


Q ss_pred             eEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126          462 QVVDYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       462 ~~~~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      ++..+......+..++|+|||+.|+++.
T Consensus       173 ~~~~~~~~~~~~~~i~~~~dg~~l~v~~  200 (333)
T 2dg1_A          173 TVTPIIQNISVANGIALSTDEKVLWVTE  200 (333)
T ss_dssp             CEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             EEEEeecCCCcccceEECCCCCEEEEEe
Confidence            6655444445688999999999766554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.22  E-value=1.5e-09  Score=118.36  Aligned_cols=232  Identities=6%  Similarity=-0.081  Sum_probs=141.2

Q ss_pred             cccceeccCCCeEEeeecCC-----eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc-----
Q 011126          238 HGSATLKPGDHELTLGQRMR-----RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT-----  307 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg-----~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~-----  307 (493)
                      +..++|+|||++||.+..++     .|++||+.+......      .+. + ..+..++|+|||+.|+.++.++.     
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------~~~-~-~~~~~~~wspDg~~l~~~~~~~~~~~~~  198 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------VLE-R-VKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------EEE-E-ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------ccc-C-cccceEEEEeCCCEEEEEEECCcccccc
Confidence            34589999999999766543     899999986543211      111 1 23667999999999999988876     


Q ss_pred             -----------EEEEecCCCeee--eeeeccCCC--CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCC
Q 011126          308 -----------VRVWKVIEHERL--DGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK  372 (493)
Q Consensus       308 -----------V~iWdl~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  372 (493)
                                 |++|++.++...  ..+......  .....+++++...++.....           ......+.+++..
T Consensus       199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-----------~~~~~~l~~~d~~  267 (710)
T 2xdw_A          199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG-----------CDPVNRLWYCDLQ  267 (710)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS-----------SSSCCEEEEEEGG
T ss_pred             ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc-----------CCCccEEEEEECc
Confidence                       999999877632  112222112  22334443332221111100           0013344444432


Q ss_pred             cee--e-cccceEEEecCCCCEeEEEEeCCC-eEEEEeC-C---CeEEEEECCCCc---EEEEecCCC--cEEEEEEccC
Q 011126          373 VFR--L-LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA-D---KTVRLWQVGIDR---CLRVFSHNN--YVTSVAFNPV  439 (493)
Q Consensus       373 ~~~--~-~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~-D---g~V~lWd~~~~~---~~~~~~h~~--~V~~v~fsp~  439 (493)
                      ...  . .......+..+...+.. .|+|+| .|+..+. +   ..|.+||+.++.   ....+.|..  .+..+.|++ 
T Consensus       268 ~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-  345 (710)
T 2xdw_A          268 QESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-  345 (710)
T ss_dssp             GSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-
T ss_pred             ccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-
Confidence            200  0 00124555666666655 488887 5554443 2   369999998764   233444544  788899997 


Q ss_pred             CCCEEEEEeCCCe--EEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeec
Q 011126          440 DDNYFISGSIDGK--VRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       440 d~~~l~sgs~Dg~--V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ++.++++...|+.  |++|++.+++.+ .+..+...+..++++|+++.++.+..
T Consensus       346 ~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~s  399 (710)
T 2xdw_A          346 SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFT  399 (710)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred             CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEe
Confidence            7888888888884  667788667644 45555677899999999987765543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.18  E-value=1.2e-08  Score=98.59  Aligned_cols=241  Identities=8%  Similarity=-0.013  Sum_probs=142.2

Q ss_pred             cccccceeccCCCeEEe-------eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCCc
Q 011126          236 DRHGSATLKPGDHELTL-------GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGT  307 (493)
Q Consensus       236 ~~~~~~~fsp~g~~las-------gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~  307 (493)
                      .....++|+++|.++++       +..++.|.+|+.......  .+.. ....++...+..+.++++ |+++++ .....
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~   93 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT--VICK-PEVNGYGGIPAGCQCDRDANQLFVA-DMRLG   93 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE--EEEC-CEETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE--EEEe-cccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence            34456889999988888       678899999987644321  1100 111235577999999999 765554 44447


Q ss_pred             EEEEecCCCeeeee-eecc----CCCCceEEEeeCCCCceeeeeccCccc-cceeeeecCCCceEEEcCCCceeecccce
Q 011126          308 VRVWKVIEHERLDG-FDVQ----DTDPSCLYFTINHLSQLIPIDVDKEKI-DKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (493)
Q Consensus       308 V~iWdl~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (493)
                      |.+||.. ++.... ....    ...+..+.+.++  ..++......... .............+..++.. ..     .
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-----~  164 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-----M  164 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-----E
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccccccccCCCCeEEEECCC-CC-----E
Confidence            9999987 654322 2111    112333333322  2233222111000 00000000111344444432 11     1


Q ss_pred             EEEecCCCCEeEEEEe----CCC-eE-EEEeCCCeEEEEECC-CCcE-----EEEec-CC-CcEEEEEEccCCCCEEEEE
Q 011126          382 HEFQGHSSEVLDLSWS----KNG-FL-LSSSADKTVRLWQVG-IDRC-----LRVFS-HN-NYVTSVAFNPVDDNYFISG  447 (493)
Q Consensus       382 ~~~~~h~~~V~~l~~s----p~g-~l-~sgs~Dg~V~lWd~~-~~~~-----~~~~~-h~-~~V~~v~fsp~d~~~l~sg  447 (493)
                      ..+..+......++|+    |++ .| ++...++.|.+||+. .+..     ...+. +. ..+..+++++ +++++++.
T Consensus       165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~  243 (314)
T 1pjx_A          165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVAN  243 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEE
T ss_pred             EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEE
Confidence            1222334456889999    998 54 455578999999986 3432     22222 22 6788999999 99999988


Q ss_pred             eCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeec
Q 011126          448 SIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       448 s~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ..++.|.+||..+++.+ .+..+...+.+++|+|+|+.|.+++.
T Consensus       244 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~  287 (314)
T 1pjx_A          244 WGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             ETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             cCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence            88999999999866654 34444578999999999996666543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.16  E-value=3.6e-08  Score=95.30  Aligned_cols=230  Identities=9%  Similarity=0.089  Sum_probs=141.0

Q ss_pred             cceeccC-CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126          240 SATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       240 ~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~  318 (493)
                      ...|+|+ +.++++....+.|..|+.......         ...+...+.+++++++|+++++ . +..|.+||..+++.
T Consensus        17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---------~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---------RVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA   85 (297)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTCCEE---------EEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCcEE---------EEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence            3678885 556677778899999998754321         1124567999999999995554 4 56799999988765


Q ss_pred             eeeeeccCCCC--ceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126          319 LDGFDVQDTDP--SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (493)
Q Consensus       319 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (493)
                      ...........  ....+.......++..........   .......+.++.++...      .+..+..+......++|
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~---~~~~~~~~~l~~~d~~g------~~~~~~~~~~~pngi~~  156 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAP---AVLERHQGALYSLFPDH------HVKKYFDQVDISNGLDW  156 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBT---TBCCTTCEEEEEECTTS------CEEEEEEEESBEEEEEE
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccc---ccccCCCcEEEEEECCC------CEEEEeeccccccceEE
Confidence            43322211111  111122222233333221111000   00001222333333321      11122233445678999


Q ss_pred             eCCC--eEEEEeCCCeEEEEEC--CCCcEE--EEe---c-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-
Q 011126          397 SKNG--FLLSSSADKTVRLWQV--GIDRCL--RVF---S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-  465 (493)
Q Consensus       397 sp~g--~l~sgs~Dg~V~lWd~--~~~~~~--~~~---~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-  465 (493)
                      +|++  ++++.+.++.|.+|++  .++...  +.+   . +...+..+++.+ ++++.++....+.|.+||..+++++. 
T Consensus       157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~  235 (297)
T 3g4e_A          157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQT  235 (297)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred             cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence            9998  4466677899999997  455432  222   2 346788999999 89988888888999999999888775 


Q ss_pred             ecCCCCCeEEEEEc-cCCCEEEEeec
Q 011126          466 YTDIREIVSAVCYC-PDGKVRQNSAC  490 (493)
Q Consensus       466 ~~~~~~~I~sv~~s-pdG~~l~s~s~  490 (493)
                      +..+...+++++|. ||++.|.+++.
T Consensus       236 i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          236 VKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EECCCCCceEEEEeCCCCCEEEEEcC
Confidence            44444689999998 99988776654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.15  E-value=7.7e-09  Score=98.91  Aligned_cols=191  Identities=10%  Similarity=0.139  Sum_probs=121.5

Q ss_pred             ccccee-ccCCCeEEeeec-CCeEEEEECCCccccccccccceee-ecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126          238 HGSATL-KPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (493)
Q Consensus       238 ~~~~~f-sp~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~  314 (493)
                      ...+++ .+++.++++... ++.|++|+.....  +.      .+ ..+...+..|+++|+|+++++...++.|++|+..
T Consensus        79 p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~--~~------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~  150 (286)
T 1q7f_A           79 PNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQF--VR------KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN  150 (286)
T ss_dssp             EEEEEEETTTTEEEEEECGGGCEEEEECTTSCE--EE------EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             ceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcE--EE------EecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC
Confidence            345788 577777777644 8899999944221  11      12 1344578999999999988887788999999964


Q ss_pred             CCeeeeeeeccC--CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec--CCCC
Q 011126          315 EHERLDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG--HSSE  390 (493)
Q Consensus       315 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~  390 (493)
                       ++.+..+....  ..+..+.+.++  ..++..              ...+..+.+|+..     .+.+..+..  +...
T Consensus       151 -g~~~~~~~~~~~~~~p~~i~~~~~--g~l~v~--------------~~~~~~i~~~~~~-----g~~~~~~~~~g~~~~  208 (286)
T 1q7f_A          151 -GNVLHKFGCSKHLEFPNGVVVNDK--QEIFIS--------------DNRAHCVKVFNYE-----GQYLRQIGGEGITNY  208 (286)
T ss_dssp             -SCEEEEEECTTTCSSEEEEEECSS--SEEEEE--------------EGGGTEEEEEETT-----CCEEEEESCTTTSCS
T ss_pred             -CCEEEEeCCCCccCCcEEEEECCC--CCEEEE--------------ECCCCEEEEEcCC-----CCEEEEEccCCccCC
Confidence             55444443221  12223333222  222222              1223344444432     122333433  3467


Q ss_pred             EeEEEEeCCC-eEEEEeCCC-eEEEEECCCCcEEEEec-C--CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC
Q 011126          391 VLDLSWSKNG-FLLSSSADK-TVRLWQVGIDRCLRVFS-H--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (493)
Q Consensus       391 V~~l~~sp~g-~l~sgs~Dg-~V~lWd~~~~~~~~~~~-h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~  461 (493)
                      +..|+++++| ++++...++ .|.+||. .++.+..+. +  ...+.+++++| +++++++ +.|++|++|++...
T Consensus       209 p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          209 PIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred             CcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence            8999999999 777777775 9999995 456666664 2  33578999999 8887777 67999999998653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.15  E-value=1.3e-09  Score=118.53  Aligned_cols=187  Identities=12%  Similarity=0.046  Sum_probs=122.6

Q ss_pred             ccccceeccCCCeEE-----eeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc----
Q 011126          237 RHGSATLKPGDHELT-----LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT----  307 (493)
Q Consensus       237 ~~~~~~fsp~g~~la-----sgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~----  307 (493)
                      .+..++|+|||++||     .|+.+..|++||+.+.......     .+...  ....+.|+|||+.|+.++.|..    
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-----~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-----VIEGG--KYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-----CBSCC--TTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-----ccCcc--cccceEEecCCCEEEEEEecCCCCCc
Confidence            344589999999999     5666689999999876532000     11111  1257899999999999998876    


Q ss_pred             ---------EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126          308 ---------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (493)
Q Consensus       308 ---------V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (493)
                               |++|++.++.....                                                         
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~---------------------------------------------------------  217 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDT---------------------------------------------------------  217 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCE---------------------------------------------------------
T ss_pred             cccCCCCCEEEEEECCCCchhce---------------------------------------------------------
Confidence                     88888765541000                                                         


Q ss_pred             cceEEEecCCCCEeEEEEeCCC-eEEEEeCCC----eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe---CC
Q 011126          379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK----TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS---ID  450 (493)
Q Consensus       379 ~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg----~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs---~D  450 (493)
                       .+.....|...+..+.|+|+| +|+..+.++    .|.+|+..++.......+...+....| | ++.+++...   .+
T Consensus       218 -lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~  294 (695)
T 2bkl_A          218 -VVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPR  294 (695)
T ss_dssp             -EEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-E-TTEEEEEECTTCTT
T ss_pred             -EEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-c-CCcEEEEECCCCCC
Confidence             011122355678899999999 676666555    677777766665555556666677777 5 455555544   25


Q ss_pred             CeEEEEeCCCCeE---EEecCC--CCCeEEEEEccCCCEEEEeecC
Q 011126          451 GKVRIWEVRRCQV---VDYTDI--REIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       451 g~V~IWdl~~~~~---~~~~~~--~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ++|.+||+.+++.   ..+..+  ...+..++|+ ++.++++...+
T Consensus       295 ~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~d  339 (695)
T 2bkl_A          295 QRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKD  339 (695)
T ss_dssp             CEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEET
T ss_pred             CEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEEC
Confidence            8999999987652   333333  4568888888 66666665543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.15  E-value=1.1e-08  Score=100.61  Aligned_cols=202  Identities=10%  Similarity=0.115  Sum_probs=132.7

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCcccccccccc---ceeeecccCCEEEEEEcc-CCCEEEEEE-CCCcEEEE
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYT---GQEFLAHEGSILTMKFSL-DGQYLASGG-EDGTVRVW  311 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~---~~~l~~H~~~I~~l~fsp-dg~~Lasgs-~Dg~V~iW  311 (493)
                      ....++++|+|+++++...+++|++|+.......+..+..   ...-.++-.....|+|+| +|.++++.+ .++.|++|
T Consensus        92 ~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~  171 (329)
T 3fvz_A           92 LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF  171 (329)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEE
T ss_pred             CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEE
Confidence            3445899999999999989999999997644211211100   000024555789999999 888888876 68999999


Q ss_pred             ecCCCeeeeeeeccCCC----------CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126          312 KVIEHERLDGFDVQDTD----------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (493)
                      + .++..+..+......          +..+.+.+.. ..++              +.......+.+|+...    .+.+
T Consensus       172 ~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~--------------v~d~~~~~I~~~~~~~----G~~~  231 (329)
T 3fvz_A          172 S-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLC--------------VADRENGRIQCFKTDT----KEFV  231 (329)
T ss_dssp             C-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEE--------------EEETTTTEEEEEETTT----CCEE
T ss_pred             c-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEE--------------EEECCCCEEEEEECCC----CcEE
Confidence            9 566666555332211          2222222211 1122              2223344455554431    2223


Q ss_pred             EEE--ecCCCCEeEEEEeCCC-eEEEEe-------CCCeEEEEECCCCcEEEEec----CCCcEEEEEEccCCCCEEEEE
Q 011126          382 HEF--QGHSSEVLDLSWSKNG-FLLSSS-------ADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISG  447 (493)
Q Consensus       382 ~~~--~~h~~~V~~l~~sp~g-~l~sgs-------~Dg~V~lWd~~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sg  447 (493)
                      ..+  ..+...+..++|+| + .+++.+       .+.+|++||+.+++.+..+.    +...+..|+++| ++.++++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad  309 (329)
T 3fvz_A          232 REIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGD  309 (329)
T ss_dssp             EEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEE
T ss_pred             EEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEE
Confidence            344  24667889999999 6 333333       34589999999999999883    667899999999 89899999


Q ss_pred             eCCCeEEEEeCCC
Q 011126          448 SIDGKVRIWEVRR  460 (493)
Q Consensus       448 s~Dg~V~IWdl~~  460 (493)
                      ..+++|++|++..
T Consensus       310 ~~~~~I~~~~~~~  322 (329)
T 3fvz_A          310 AHTNTVWKFTLTE  322 (329)
T ss_dssp             SSSCCEEEEEEEE
T ss_pred             CCCCEEEEEeCCc
Confidence            9999999999753

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.12  E-value=1.2e-09  Score=107.53  Aligned_cols=165  Identities=13%  Similarity=0.139  Sum_probs=108.7

Q ss_pred             ceeccCCCeEEeee---------cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---Cc-
Q 011126          241 ATLKPGDHELTLGQ---------RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GT-  307 (493)
Q Consensus       241 ~~fsp~g~~lasgs---------~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~-  307 (493)
                      .++  +|++++...         .++.|.+|++......        .+    ..+..++|+|||++|+.++.+   +. 
T Consensus        20 ~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--------~l----~~~~~~~~SpDg~~la~~~~~~~~~~~   85 (347)
T 2gop_A           20 PRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR--------FI----ENATMPRISPDGKKIAFMRANEEKKVS   85 (347)
T ss_dssp             EEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE--------EE----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred             ceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE--------Ec----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence            455  777776532         3677999998754311        12    467889999999999887754   33 


Q ss_pred             -EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec
Q 011126          308 -VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (493)
Q Consensus       308 -V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  386 (493)
                       |.+|++.+++.....                                                              . 
T Consensus        86 ~l~~~~~~~g~~~~l~--------------------------------------------------------------~-  102 (347)
T 2gop_A           86 EIWVADLETLSSKKIL--------------------------------------------------------------E-  102 (347)
T ss_dssp             EEEEEETTTTEEEEEE--------------------------------------------------------------E-
T ss_pred             eEEEEECCCCceEEEE--------------------------------------------------------------c-
Confidence             667777655432111                                                              1 


Q ss_pred             CCCCEeEEEEeCCC-eEEEEeC---------------------------CCeEEEEECCCCcEEEEecCCCcEEEEEEcc
Q 011126          387 HSSEVLDLSWSKNG-FLLSSSA---------------------------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP  438 (493)
Q Consensus       387 h~~~V~~l~~sp~g-~l~sgs~---------------------------Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp  438 (493)
                      +.. +..++|+|+| .|+.++.                           ...|.+||+.+++.+..+... .+..+.|+|
T Consensus       103 ~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~sp  180 (347)
T 2gop_A          103 AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHR  180 (347)
T ss_dssp             ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEET
T ss_pred             CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCC
Confidence            112 6778888887 5555542                           357999999988774444333 788999999


Q ss_pred             CCCCEEEEEeCCC---------eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          439 VDDNYFISGSIDG---------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       439 ~d~~~l~sgs~Dg---------~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                       ++ +++++..++         .|.++|  +++...+..+ ..+..+  +|||+.|+..+.+
T Consensus       181 -dg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~  235 (347)
T 2gop_A          181 -DK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILLYGKP  235 (347)
T ss_dssp             -TE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEEEECC
T ss_pred             -Ce-EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEEEEcc
Confidence             88 877776542         455555  6666555444 555554  9999988877643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.08  E-value=1.4e-08  Score=101.37  Aligned_cols=221  Identities=11%  Similarity=-0.030  Sum_probs=122.9

Q ss_pred             cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC----------CCcEEEEecCCCeeeeeeec
Q 011126          255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----------DGTVRVWKVIEHERLDGFDV  324 (493)
Q Consensus       255 ~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----------Dg~V~iWdl~~~~~~~~~~~  324 (493)
                      .|+.|.+||..+.+.       ...+..+..+  .++|+|||++|+++..          +++|.+||+.+.+.+..+..
T Consensus        29 ~d~~v~v~D~~t~~~-------~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~   99 (361)
T 2oiz_A           29 TESRVHVYDYTNGKF-------LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL   99 (361)
T ss_dssp             GGCEEEEEETTTCCE-------EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred             ccCeEEEEECCCCeE-------EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence            478999999765432       1245555555  8999999999998863          67899999999988888765


Q ss_pred             cC------CCCceEEEeeCCCC----------ceeeeeccCccccce-e-----------------eeecCCCceEEEcC
Q 011126          325 QD------TDPSCLYFTINHLS----------QLIPIDVDKEKIDKT-K-----------------SLRKSSDLTCVVLP  370 (493)
Q Consensus       325 ~~------~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-~-----------------~~~~s~~~~~~~~~  370 (493)
                      ..      ..+..+.+.+++..          .+..++....+.... .                 .+..+.++.+..+.
T Consensus       100 ~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~  179 (361)
T 2oiz_A          100 PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTIN  179 (361)
T ss_dssp             CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred             CccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence            42      23444555444321          222222222111110 0                 00111111111111


Q ss_pred             CCceeecccce------EEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcE--EEEecC-------C----Cc
Q 011126          371 PKVFRLLEKPL------HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC--LRVFSH-------N----NY  430 (493)
Q Consensus       371 ~~~~~~~~~~~------~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~--~~~~~h-------~----~~  430 (493)
                      ...   ..+..      ..+..+..++ .+.+++++ .++..+.++.|.++|+.....  +..+..       .    ..
T Consensus       180 ~~~---~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g  255 (361)
T 2oiz_A          180 LGE---DGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG  255 (361)
T ss_dssp             ECT---TSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred             ECC---CCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC
Confidence            100   00000      0011111111 22234555 555566788899999865432  222210       0    11


Q ss_pred             EEEEEEccCCCCEEEEEeC-----------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          431 VTSVAFNPVDDNYFISGSI-----------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       431 V~~v~fsp~d~~~l~sgs~-----------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ...++|+| +++.++++..           .++|.+||+.+++++....... +.+++|+|||++|++++.
T Consensus       256 ~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~  324 (361)
T 2oiz_A          256 YNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG  324 (361)
T ss_dssp             SSCEEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS
T ss_pred             eeEEEEec-CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC
Confidence            11278999 7776665543           3589999999999886443334 999999999999987753

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.07  E-value=1e-08  Score=100.76  Aligned_cols=181  Identities=7%  Similarity=-0.050  Sum_probs=126.6

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  320 (493)
                      +.+. ++.+.++...++.|.+||..+.+..       .++. .......|+++++++.+++...++.|.+||..+++...
T Consensus        49 i~~~-~~~lyv~~~~~~~v~viD~~t~~~~-------~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~  119 (328)
T 3dsm_A           49 MVIR-DGIGWIVVNNSHVIFAIDINTFKEV-------GRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG  119 (328)
T ss_dssp             EEEE-TTEEEEEEGGGTEEEEEETTTCCEE-------EEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred             EEEE-CCEEEEEEcCCCEEEEEECcccEEE-------EEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE
Confidence            4453 4556666667899999998754421       2232 34668899999998544444489999999998887654


Q ss_pred             eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC
Q 011126          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG  400 (493)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  400 (493)
                      .+.....                                                         .++......|++ .++
T Consensus       120 ~i~~g~~---------------------------------------------------------~~~~~~p~~i~~-~~~  141 (328)
T 3dsm_A          120 YIECPDM---------------------------------------------------------DMESGSTEQMVQ-YGK  141 (328)
T ss_dssp             EEECTTC---------------------------------------------------------CTTTCBCCCEEE-ETT
T ss_pred             EEEcCCc---------------------------------------------------------cccCCCcceEEE-ECC
Confidence            4432210                                                         011123345566 445


Q ss_pred             e-EEEEe-CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC----------CeEEEEeCCCCeEEEecC
Q 011126          401 F-LLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID----------GKVRIWEVRRCQVVDYTD  468 (493)
Q Consensus       401 ~-l~sgs-~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D----------g~V~IWdl~~~~~~~~~~  468 (493)
                      . +++.. .+++|.+||+.+++.+..+........+.++| ++++++++..+          +.|.+||..++++.....
T Consensus       142 ~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~  220 (328)
T 3dsm_A          142 YVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK  220 (328)
T ss_dssp             EEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred             EEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence            4 44443 48999999999999988887666678899999 89888777655          799999999998875332


Q ss_pred             C--CCCeEEEEEccCCCEEEEee
Q 011126          469 I--REIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       469 ~--~~~I~sv~~spdG~~l~s~s  489 (493)
                      .  ...+..++|+|||+.|+++.
T Consensus       221 ~~~g~~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          221 FKLGDWPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             CCTTCCCEEEEECTTSCEEEEES
T ss_pred             cCCCCCceeEEEecCCCEEEEEc
Confidence            2  34689999999999887754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.06  E-value=1.4e-07  Score=89.99  Aligned_cols=223  Identities=6%  Similarity=0.035  Sum_probs=141.1

Q ss_pred             cccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~  315 (493)
                      ..+.+++++++|.++++...++.|.+|+.. ..  +...    .+..+...+..|+++++|.++++...++.|..|+.. 
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~--~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLD-GK--ITEY----PLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-CC--EEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCC-CC--eEEe----cCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            345568899999988877678999999876 22  1111    112245679999999999988877778889999975 


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      ++ ...+..+........+.......++..              ......+..++... ...   ......+...+..++
T Consensus        87 g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~--------------~~~~~~i~~~d~~g-~~~---~~~~~~~~~~~~~i~  147 (299)
T 2z2n_A           87 GI-IKEYTLPNPDSAPYGITEGPNGDIWFT--------------EMNGNRIGRITDDG-KIR---EYELPNKGSYPSFIT  147 (299)
T ss_dssp             SC-EEEEECSSTTCCEEEEEECTTSCEEEE--------------ETTTTEEEEECTTC-CEE---EEECSSTTCCEEEEE
T ss_pred             Cc-EEEEeCCCcCCCceeeEECCCCCEEEE--------------ecCCceEEEECCCC-CEE---EecCCCCCCCCceEE
Confidence            33 222322111111111222222222221              11233344444311 100   111123456789999


Q ss_pred             EeCCC-eEEEEeCCCeEEEEECCCCcEEEE-ec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCC
Q 011126          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIR  470 (493)
Q Consensus       396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~-~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~~  470 (493)
                      +.++| ++++...++.|..||. +++.... .. ....+.++++.| +++++++...++.|.+||. +++...+  ....
T Consensus       148 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~  224 (299)
T 2z2n_A          148 LGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SGEITEFKIPTPN  224 (299)
T ss_dssp             ECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTT
T ss_pred             EcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CCcEEEEECCCCC
Confidence            99998 6666666789999998 6655443 22 456788999999 8888887777899999999 7765543  3345


Q ss_pred             CCeEEEEEccCCCEEEEe
Q 011126          471 EIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       471 ~~I~sv~~spdG~~l~s~  488 (493)
                      ..+.+++++|+|+++++.
T Consensus       225 ~~~~~i~~~~~g~l~v~~  242 (299)
T 2z2n_A          225 ARPHAITAGAGIDLWFTE  242 (299)
T ss_dssp             CCEEEEEECSTTCEEEEE
T ss_pred             CCceeEEECCCCCEEEec
Confidence            679999999999976664

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.06  E-value=1.3e-07  Score=94.80  Aligned_cols=226  Identities=8%  Similarity=-0.042  Sum_probs=130.5

Q ss_pred             cceeccCCCeEEeee----------cCCeEEEEECCCccccccccccc--eeeecccCCEEEEEEccCCCEEEEEEC--C
Q 011126          240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGE--D  305 (493)
Q Consensus       240 ~~~fsp~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~~--~~l~~H~~~I~~l~fspdg~~Lasgs~--D  305 (493)
                      .++++|+|++++++.          .++.|.+||..+.... ..+...  .... +...-..+.|+|||++|+.+..  +
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~-~~i~~~~~~~~~-~g~~p~~~~~spDG~~l~v~n~~~~  147 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI-ADIELPDAPRFD-VGPYSWMNANTPNNADLLFFQFAAG  147 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE-EEEECCCccccc-cCCCccceEECCCCCEEEEEecCCC
Confidence            489999999998875          3678999998743321 111000  0000 1123458999999999998874  4


Q ss_pred             CcEEEEecCCCeeeee-eeccCC-----CCceEEEeeCCCCceeeeeccCcccccee-----------------------
Q 011126          306 GTVRVWKVIEHERLDG-FDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTK-----------------------  356 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  356 (493)
                      +.|.++| .+++.+.. +.....     .....++.......+..++. ..+.....                       
T Consensus       148 ~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  225 (373)
T 2mad_H          148 PAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG  225 (373)
T ss_pred             CeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC
Confidence            7899999 99988777 654321     00001111112222333322 11111000                       


Q ss_pred             -eeecCCCceEEEcCCCceeecccceEEEec----------CCCCEeEEEEeCCC-eEEEEeC----------CCeEEEE
Q 011126          357 -SLRKSSDLTCVVLPPKVFRLLEKPLHEFQG----------HSSEVLDLSWSKNG-FLLSSSA----------DKTVRLW  414 (493)
Q Consensus       357 -~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~----------h~~~V~~l~~sp~g-~l~sgs~----------Dg~V~lW  414 (493)
                       .+.....+.+.+++......  +.+..+.-          .......++++|++ .++.+..          .+.|.++
T Consensus       226 ~~~~~~~~~~v~vid~~~~~~--~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI  303 (373)
T 2mad_H          226 RIVWPVYSGKILQADISAAGA--TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             EEEEEcCCceEEEEeccCCcc--eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence             00000111222222211000  00111110          11224447889987 5444432          3689999


Q ss_pred             ECCCCcEEEEecCCCcEEEEEEccCCCC-EEEEEe-CCCeEEEEeCCCCeEEEe-cCCCCC
Q 011126          415 QVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGS-IDGKVRIWEVRRCQVVDY-TDIREI  472 (493)
Q Consensus       415 d~~~~~~~~~~~h~~~V~~v~fsp~d~~-~l~sgs-~Dg~V~IWdl~~~~~~~~-~~~~~~  472 (493)
                      |+.+++.+..+.......++.|+| +++ +++++. .++.|.+||+.+++++.. ......
T Consensus       304 D~~t~~vv~~i~~g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~  363 (373)
T 2mad_H          304 TGLVGQTSSQISLGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSG  363 (373)
T ss_pred             ECCCCEEEEEEECCCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCC
Confidence            999999999998777899999999 888 777777 589999999999998865 443333

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.04  E-value=1.4e-07  Score=92.43  Aligned_cols=223  Identities=8%  Similarity=0.008  Sum_probs=133.3

Q ss_pred             cceeccC-CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126          240 SATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       240 ~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~  318 (493)
                      ...|+|+ +.++++....+.|.+|+.......        .+ .+...|.++.|+|+|+++++. .+ .|.+||..+++.
T Consensus        53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~--------~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~  121 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNILERELHELHLASGRKT--------VH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL  121 (326)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--------EE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEECCCCcEE--------EE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE
Confidence            3678997 456667777899999998754321        11 134579999999999877754 44 499999987765


Q ss_pred             eeeeeccCCC--CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126          319 LDGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (493)
Q Consensus       319 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (493)
                      ..........  .....+.......++........        ......++.++ .      ..+..+..+......++|
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~--------~~~~~~l~~~~-~------g~~~~~~~~~~~~~~i~~  186 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA--------ETGAGSIYHVA-K------GKVTKLFADISIPNSICF  186 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC--------CTTCEEEEEEE-T------TEEEEEEEEESSEEEEEE
T ss_pred             EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcC--------CCCceEEEEEe-C------CcEEEeeCCCcccCCeEE
Confidence            3322211111  01111222222223222111000        00112233332 1      011112223345678999


Q ss_pred             eCCC-eE-EEEeCCCeEEEEECC--CC-c-----EEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 011126          397 SKNG-FL-LSSSADKTVRLWQVG--ID-R-----CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-  464 (493)
Q Consensus       397 sp~g-~l-~sgs~Dg~V~lWd~~--~~-~-----~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-  464 (493)
                      +|++ .| ++.+.++.|.+||+.  ++ .     .+..+. ....+..+++.+ +++++++...++.|.+||. +++.+ 
T Consensus       187 s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~-~g~~~~  264 (326)
T 2ghs_A          187 SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNHIA  264 (326)
T ss_dssp             CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCCEEE
T ss_pred             cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECC-CCCEEE
Confidence            9998 44 555667899999986  55 2     122222 345678999999 8988888777889999999 45554 


Q ss_pred             EecCCCCCeEEEEEc-cCCCEEEEeec
Q 011126          465 DYTDIREIVSAVCYC-PDGKVRQNSAC  490 (493)
Q Consensus       465 ~~~~~~~~I~sv~~s-pdG~~l~s~s~  490 (493)
                      .+......+++++|. |+++.|++++.
T Consensus       265 ~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          265 RYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEECCCCCcEEEEEecCCCCEEEEEec
Confidence            444455579999998 99887766554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.04  E-value=1.3e-08  Score=110.74  Aligned_cols=207  Identities=11%  Similarity=0.043  Sum_probs=120.3

Q ss_pred             cccCCEEEEEEccCCCEEEEEECCC-----cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126          282 AHEGSILTMKFSLDGQYLASGGEDG-----TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (493)
Q Consensus       282 ~H~~~I~~l~fspdg~~Lasgs~Dg-----~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (493)
                      +|...+..++|||||++||.+..++     .|++||+.+++........ .....+.|++++...++.............
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3555789999999999998776543     8999999999876532221 124456666655433332211110000000


Q ss_pred             eeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeC-----CCeEEEEECCC------C--cEE
Q 011126          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA-----DKTVRLWQVGI------D--RCL  422 (493)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~-----Dg~V~lWd~~~------~--~~~  422 (493)
                      .........+.+|+..........+.....|...+..+.|+|+| +|+..+.     +..|.+||+.+      +  ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence            00001122344444432211111122222355668899999999 6665543     67899999986      4  233


Q ss_pred             EEecCCCcEEEEEEccCCCCEEEEEeCC----CeEEEEeCCCCe---EEEecCCCC--CeEEEEEccCCCEEEEeecC
Q 011126          423 RVFSHNNYVTSVAFNPVDDNYFISGSID----GKVRIWEVRRCQ---VVDYTDIRE--IVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       423 ~~~~h~~~V~~v~fsp~d~~~l~sgs~D----g~V~IWdl~~~~---~~~~~~~~~--~I~sv~~spdG~~l~s~s~d  491 (493)
                      ....+...+.. .|+| +++.|+..+..    +.|.+||+.++.   ...+..+..  .+..++|++++.++++...+
T Consensus       281 ~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          281 KLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             EEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             EeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence            33345555554 4888 78877766553    369999998764   233444433  68889999777777766544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.03  E-value=2e-09  Score=117.04  Aligned_cols=181  Identities=12%  Similarity=0.036  Sum_probs=118.4

Q ss_pred             eeccCCCeEEeeecCC---eEEEE--ECCCcccccccccc-ceeeecccCCEEEEEEccCCCEEE-----EEECCCcEEE
Q 011126          242 TLKPGDHELTLGQRMR---RVRVH--PVKKQSRELSSLYT-GQEFLAHEGSILTMKFSLDGQYLA-----SGGEDGTVRV  310 (493)
Q Consensus       242 ~fsp~g~~lasgs~dg---~V~vw--d~~~~~~~~~~~~~-~~~l~~H~~~I~~l~fspdg~~La-----sgs~Dg~V~i  310 (493)
                      ...|+|.+++....++   .-.||  +.......  .+.- ...-.+|...+..++|||||++||     .|+.+.+|++
T Consensus        74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v  151 (695)
T 2bkl_A           74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEK--VLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHV  151 (695)
T ss_dssp             CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCE--EEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEE
T ss_pred             CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcE--EEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEE
Confidence            3458898888766543   34444  43222111  1100 001135666799999999999998     4445578999


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      ||+.+++.+...                                                            .+..  ..
T Consensus       152 ~dl~tg~~~~~~------------------------------------------------------------~~~~--~~  169 (695)
T 2bkl_A          152 IDVDSGEWSKVD------------------------------------------------------------VIEG--GK  169 (695)
T ss_dssp             EETTTCCBCSSC------------------------------------------------------------CBSC--CT
T ss_pred             EECCCCCCcCCc------------------------------------------------------------ccCc--cc
Confidence            999887632000                                                            0000  11


Q ss_pred             EeEEEEeCCC-eEEEEeCCCe-------------EEEEECCCCcE--EEEec---CCCcEEEEEEccCCCCEEEEEeCCC
Q 011126          391 VLDLSWSKNG-FLLSSSADKT-------------VRLWQVGIDRC--LRVFS---HNNYVTSVAFNPVDDNYFISGSIDG  451 (493)
Q Consensus       391 V~~l~~sp~g-~l~sgs~Dg~-------------V~lWd~~~~~~--~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg  451 (493)
                      ...++|+|+| .|+.++.|..             |++|++.++..  ...+.   +...+..+.|+| ++++|+.++.++
T Consensus       170 ~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~  248 (695)
T 2bkl_A          170 YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRG  248 (695)
T ss_dssp             TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEET
T ss_pred             ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCC
Confidence            1468999999 8888888776             99999998762  22332   456889999999 999998887766


Q ss_pred             ----eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126          452 ----KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       452 ----~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                          .|++|+..+++...+..+...+....+ |+|+ ++..+
T Consensus       249 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s  288 (695)
T 2bkl_A          249 WSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLT  288 (695)
T ss_dssp             TTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEE
T ss_pred             CCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEE
Confidence                788888777776666656666666666 6777 55443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.01  E-value=3.7e-07  Score=87.09  Aligned_cols=221  Identities=5%  Similarity=0.013  Sum_probs=138.5

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~  317 (493)
                      +..++++++|.++++...++.|..|+.......+       .+..+...+..|.+.++|.++++...++.|.+||. +++
T Consensus        59 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~-------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~  130 (299)
T 2z2n_A           59 VMCLTISSDGEVWFTENAANKIGRITKKGIIKEY-------TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK  130 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTSCEEEE-------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred             eeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEE-------eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence            3458889999988887778899999875221111       11224557899999999988887777889999998 554


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (493)
                      .. .+...........+.......++..              ......+..++. ...+.   ......+...+..+++.
T Consensus       131 ~~-~~~~~~~~~~~~~i~~~~~g~l~v~--------------~~~~~~i~~~~~-~g~~~---~~~~~~~~~~~~~i~~~  191 (299)
T 2z2n_A          131 IR-EYELPNKGSYPSFITLGSDNALWFT--------------ENQNNAIGRITE-SGDIT---EFKIPTPASGPVGITKG  191 (299)
T ss_dssp             EE-EEECSSTTCCEEEEEECTTSCEEEE--------------ETTTTEEEEECT-TCCEE---EEECSSTTCCEEEEEEC
T ss_pred             EE-EecCCCCCCCCceEEEcCCCCEEEE--------------eCCCCEEEEEcC-CCcEE---EeeCCCCCCcceeEEEC
Confidence            32 2221111111111222222222221              122233444443 11110   01122345568899999


Q ss_pred             CCC-eEEEEeCCCeEEEEECCCCcEEEE-ec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCCCC
Q 011126          398 KNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREI  472 (493)
Q Consensus       398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~-~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~~~~  472 (493)
                      ++| ++++...++.|.+||. ++..... .. +...+.++++.| +++++++...++.|.+||. ++++..+  ......
T Consensus       192 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~  268 (299)
T 2z2n_A          192 NDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAE  268 (299)
T ss_dssp             TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCC
T ss_pred             CCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC-CCceEEEeCCCCCCc
Confidence            998 6666666889999999 6654332 12 457799999999 8887777767899999999 5665543  344567


Q ss_pred             eEEEEEccCCCEEEEee
Q 011126          473 VSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       473 I~sv~~spdG~~l~s~s  489 (493)
                      +.++++ ++|++.++..
T Consensus       269 ~~~i~~-~~g~l~v~~~  284 (299)
T 2z2n_A          269 PHGICF-DGETIWFAME  284 (299)
T ss_dssp             EEEEEE-CSSCEEEEET
T ss_pred             cceEEe-cCCCEEEEec
Confidence            999999 9998877654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.00  E-value=6.9e-08  Score=97.99  Aligned_cols=221  Identities=14%  Similarity=0.059  Sum_probs=138.0

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC--cEEEEecC
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKVI  314 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--~V~iWdl~  314 (493)
                      ....++|+++++++++...++.|++|+.......  .+     ... ..... ++|+|++++|+++..++  .|.+|+..
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~--~~-----~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT--TV-----HPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE--EE-----EET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE--Ee-----ecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence            4445899999998888888899999998754321  11     111 22233 89999999999988866  78888876


Q ss_pred             CCeeeeee----eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-----e
Q 011126          315 EHERLDGF----DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-----Q  385 (493)
Q Consensus       315 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~  385 (493)
                      .+.....+    ......+..+.+.+.. ..++..               .....+..++.....     ...+     .
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~-g~lyv~---------------d~~~~I~~~d~~~~~-----~~~~~~~~~~  261 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETE-EWLYFV---------------DSNKNFGRFNVKTQE-----VTLIKQLELS  261 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTS-SEEEEE---------------CTTCEEEEEETTTCC-----EEEEEECCCC
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCC-CeEEEE---------------ECCCcEEEEECCCCC-----EEEEeccccc
Confidence            65443333    1022233333333211 111111               112233333332111     1111     1


Q ss_pred             cCCCCE--eEEEEeCC-C-eEEEEeCCCeEEEEECCCCcEEEEecC---------------CCcEEEEEEccCCCCEEEE
Q 011126          386 GHSSEV--LDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFSH---------------NNYVTSVAFNPVDDNYFIS  446 (493)
Q Consensus       386 ~h~~~V--~~l~~sp~-g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h---------------~~~V~~v~fsp~d~~~l~s  446 (493)
                      ++...-  ..|+|+|+ + ++++-...+.|+.|+.... ......+               -.....|+|+| +++++++
T Consensus       262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyva  339 (409)
T 3hrp_A          262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIV  339 (409)
T ss_dssp             SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEE
T ss_pred             CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEE
Confidence            122222  39999995 5 6667778899999997644 3222222               24588999999 8998888


Q ss_pred             Ee-CCCeEEEEeCCCCeEEEecCC---------------CCCeEEEEEccCCCEEEEee
Q 011126          447 GS-IDGKVRIWEVRRCQVVDYTDI---------------REIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       447 gs-~Dg~V~IWdl~~~~~~~~~~~---------------~~~I~sv~~spdG~~l~s~s  489 (493)
                      -. .+++|+.|++.++++..+.++               -.....|+++|+|.++++-.
T Consensus       340 d~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~  398 (409)
T 3hrp_A          340 DGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA  398 (409)
T ss_dssp             ETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES
T ss_pred             eCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC
Confidence            88 899999999888887755443               24689999999987766544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.98  E-value=2.4e-08  Score=99.76  Aligned_cols=231  Identities=11%  Similarity=0.025  Sum_probs=139.8

Q ss_pred             ceeccCCCeEEeee----------cCCeEEEEECCCccccccccccceeeecc-------cCCEEEEEEccCCCEEEEEE
Q 011126          241 ATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLAH-------EGSILTMKFSLDGQYLASGG  303 (493)
Q Consensus       241 ~~fsp~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~~~~l~~H-------~~~I~~l~fspdg~~Lasgs  303 (493)
                      ++++|+|++++++.          .++.|.+||..+....-       ++.-.       ...-..+.|+|||++|+.+.
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~-------~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan  155 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA-------DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ  155 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE-------EEEETTCCCCCBSCCGGGEEECTTSSEEEEEE
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEE-------EEECCCccccccCCCCceEEEcCCCCEEEEEE
Confidence            89999999887765          36789999987654211       12110       11345689999999998886


Q ss_pred             C--CCcEEEEecCCCeeeeeeeccCCC-----CceEEEeeCCCCceeeeeccC-ccccce--------------------
Q 011126          304 E--DGTVRVWKVIEHERLDGFDVQDTD-----PSCLYFTINHLSQLIPIDVDK-EKIDKT--------------------  355 (493)
Q Consensus       304 ~--Dg~V~iWdl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------------  355 (493)
                      .  ++.|.++|+.+++.+.++......     ....++.....+.++.+.... +++...                    
T Consensus       156 ~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~  235 (386)
T 3sjl_D          156 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ  235 (386)
T ss_dssp             CSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET
T ss_pred             cCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEc
Confidence            4  689999999999998888653210     000011112222333333322 121000                    


Q ss_pred             ---eeeecCCCceEEEcCCCceeecccceEEEe---------c-CCCCEeEEEEeCCC-eEEEEeC----------CCeE
Q 011126          356 ---KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ---------G-HSSEVLDLSWSKNG-FLLSSSA----------DKTV  411 (493)
Q Consensus       356 ---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~---------~-h~~~V~~l~~sp~g-~l~sgs~----------Dg~V  411 (493)
                         ..+..+..+.+.+.+......  +.+..+.         + .......+++++++ .++....          .+.|
T Consensus       236 ~dG~~~~vs~~g~V~v~d~~~~~~--~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V  313 (386)
T 3sjl_D          236 KAGRLVWPTYTGKIHQIDLSSGDA--KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV  313 (386)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTSSC--EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred             CCCcEEEEeCCCEEEEEECCCCcc--eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence               000011112222222211000  0011110         0 11233357778887 4444321          2579


Q ss_pred             EEEECCCCcEEEEecCCCcEEEEEEccCCCC-EEEEE-eCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccC
Q 011126          412 RLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISG-SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD  481 (493)
Q Consensus       412 ~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~-~l~sg-s~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spd  481 (493)
                      .+.|+.+++.++.+.-...+..|+|+| +++ +|++. ..++.|.++|..+++++.........+.+.+++|
T Consensus       314 ~viD~~t~kv~~~i~vg~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          314 VVLDAKTGERLAKFEMGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEEETTTCCEEEEEEEEEEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             EEEECCCCeEEEEEECCCCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            999999999999998777899999999 876 66654 4589999999999999977666677777888887

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.98  E-value=3.9e-08  Score=94.60  Aligned_cols=189  Identities=11%  Similarity=0.017  Sum_probs=118.4

Q ss_pred             eeecccCCEEEEEEccCCC-EEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceee
Q 011126          279 EFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (493)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (493)
                      .+..+.....+++|+|+|+ +++++..++.|..|+..++  ...+..+...+..+.+.+++  .++..            
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg--~l~v~------------   85 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG--HLIAC------------   85 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC--CEEEE------------
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC--cEEEE------------
Confidence            4445666788999999998 7788888999999999877  44454443333344433322  22222            


Q ss_pred             eecCCCceEEEcCCCceeecccceEEEec-CCCCEeEEEEeCCC-eEEE----Ee-------------CCCeEEEEECCC
Q 011126          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKNG-FLLS----SS-------------ADKTVRLWQVGI  418 (493)
Q Consensus       358 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g-~l~s----gs-------------~Dg~V~lWd~~~  418 (493)
                        ......+..|+........ ......+ ....+.+++++|+| ++++    ++             ..+.|..++.. 
T Consensus        86 --~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (296)
T 3e5z_A           86 --SHGLRRLERQREPGGEWES-IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-  161 (296)
T ss_dssp             --ETTTTEEEEECSTTCCEEE-EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred             --ecCCCeEEEEcCCCCcEEE-EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence              1222345555542221100 0001111 12356789999999 6665    32             12456566655 


Q ss_pred             CcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC-CCeE---E-EecCCCCCeEEEEEccCCCEEEEe
Q 011126          419 DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQV---V-DYTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       419 ~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~-~~~~---~-~~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      ++......+....+.++|+| ++++|++.+.++.|++|++. ++++   . .+..+...+..++++++|+++++.
T Consensus       162 g~~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          162 GTLSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             SCEEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred             CCEEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence            55544455777889999999 99988888888999999997 5555   1 123344567789999999977665

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.96  E-value=9.6e-08  Score=100.91  Aligned_cols=177  Identities=10%  Similarity=0.029  Sum_probs=127.3

Q ss_pred             eccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC--CCeeee
Q 011126          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI--EHERLD  320 (493)
Q Consensus       243 fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~--~~~~~~  320 (493)
                      ..|.+.++++...+++|.++|..+....       .++. ....+..+.|+|||++|++++.|+.|.+||+.  +++.+.
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~-------~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~  234 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIK-------TVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA  234 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEE-------EEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEE-------EEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE
Confidence            4455667778888999999998755421       1222 22356789999999999999999999999985  544332


Q ss_pred             eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe---
Q 011126          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS---  397 (493)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s---  397 (493)
                      .+.                                                              . ......++|+   
T Consensus       235 ~i~--------------------------------------------------------------~-G~~P~~ia~s~~~  251 (567)
T 1qks_A          235 EIK--------------------------------------------------------------I-GSEARSIETSKME  251 (567)
T ss_dssp             EEE--------------------------------------------------------------C-CSEEEEEEECCST
T ss_pred             EEe--------------------------------------------------------------c-CCCCceeEEcccc
Confidence            221                                                              1 1234689999   


Q ss_pred             -CCC-eEE-EEeCCCeEEEEECCCCcEEEEecC------------CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          398 -KNG-FLL-SSSADKTVRLWQVGIDRCLRVFSH------------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       398 -p~g-~l~-sgs~Dg~V~lWd~~~~~~~~~~~h------------~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                       |+| +++ +...+++|.|+|..+.+.++.+..            ...+..+.+++....++++...+|+|.++|..+.+
T Consensus       252 ~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~  331 (567)
T 1qks_A          252 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN  331 (567)
T ss_dssp             TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred             CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc
Confidence             688 554 555679999999999999887752            12678899998445566666678999999998764


Q ss_pred             EE--EecCCCCCeEEEEEccCCCEEEEeec
Q 011126          463 VV--DYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       463 ~~--~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      .+  ...........+.|+|||+++++++.
T Consensus       332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~  361 (567)
T 1qks_A          332 NLKTTEISAERFLHDGGLDGSHRYFITAAN  361 (567)
T ss_dssp             EEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             cceeeeeeccccccCceECCCCCEEEEEeC
Confidence            32  23334456788999999999987763

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.96  E-value=9.1e-09  Score=103.07  Aligned_cols=131  Identities=8%  Similarity=0.013  Sum_probs=104.6

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~  317 (493)
                      +..++|  ++.+|+++ .++.|++|++....       .......|...|.++.+.+.  .++++..||.|.+||+.++.
T Consensus        90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~-------~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~  157 (388)
T 1xip_A           90 VIFVCF--HGDQVLVS-TRNALYSLDLEELS-------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS  157 (388)
T ss_dssp             EEEEEE--ETTEEEEE-ESSEEEEEESSSTT-------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC
T ss_pred             eeEEEE--CCCEEEEE-cCCcEEEEEchhhh-------ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc
Confidence            667889  99999999 88999999987543       22245667888999888765  38889999999999997654


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (493)
                      ...                                                                  +...|++++|+
T Consensus       158 ~~~------------------------------------------------------------------~~~~Vs~v~WS  171 (388)
T 1xip_A          158 TKQ------------------------------------------------------------------LAQNVTSFDVT  171 (388)
T ss_dssp             EEE------------------------------------------------------------------EEESEEEEEEC
T ss_pred             ccc------------------------------------------------------------------ccCCceEEEEc
Confidence            210                                                                  23478999999


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCcE--EEEe------c----CCCcEEEEEEccCCCCEEEEEe
Q 011126          398 KNGFLLSSSADKTVRLWQVGIDRC--LRVF------S----HNNYVTSVAFNPVDDNYFISGS  448 (493)
Q Consensus       398 p~g~l~sgs~Dg~V~lWd~~~~~~--~~~~------~----h~~~V~~v~fsp~d~~~l~sgs  448 (493)
                      |+| ++.|..||+|++|+...+.+  .+++      .    |...|.+|+|.+ ++.+|++=.
T Consensus       172 pkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~y~  232 (388)
T 1xip_A          172 NSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVFG  232 (388)
T ss_dssp             SSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEEE
T ss_pred             CCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEEEc
Confidence            999 77899999999999888776  6666      2    678999999999 888888743

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.93  E-value=1.2e-07  Score=89.51  Aligned_cols=196  Identities=9%  Similarity=0.001  Sum_probs=124.6

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~  317 (493)
                      ...++++++|.++++.. ++.|.+|+........  .     .......+..|+++++|+++++...++.|.+|+..+..
T Consensus        69 p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~--~-----~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  140 (270)
T 1rwi_B           69 PQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV--L-----PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT  140 (270)
T ss_dssp             CCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE--C-----CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS
T ss_pred             cceeEECCCCCEEEEcC-CCEEEEEeCCCceEee--e-----ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce
Confidence            44588999999766665 8899999976543211  0     01233568999999999987777778899999765543


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (493)
                      ...........+..+.+.+++  .++...              .....+..++......    ......+...+..|++.
T Consensus       141 ~~~~~~~~~~~p~~i~~~~~g--~l~v~~--------------~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~d  200 (270)
T 1rwi_B          141 QTVLPFTGLNDPDGVAVDNSG--NVYVTD--------------TDNNRVVKLEAESNNQ----VVLPFTDITAPWGIAVD  200 (270)
T ss_dssp             CEECCCCSCCSCCCEEECTTC--CEEEEE--------------GGGTEEEEECTTTCCE----EECCCSSCCSEEEEEEC
T ss_pred             eEeeccccCCCceeEEEeCCC--CEEEEE--------------CCCCEEEEEecCCCce----EeecccCCCCceEEEEC
Confidence            322211111233344443322  222221              1223444444432211    11112233678899999


Q ss_pred             CCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      ++| ++++...++.|.+|+.......... .+...+.+++++| +++++++...+++|+++++...+
T Consensus       201 ~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          201 EAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             TTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcCCCcc
Confidence            998 6666667889999998765543322 2346789999999 89999999999999999987654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.93  E-value=2.3e-07  Score=97.97  Aligned_cols=224  Identities=9%  Similarity=0.045  Sum_probs=137.2

Q ss_pred             cceeccCCCeEEeeecCCeEEEEECC--CccccccccccceeeecccCCEEEEEEc----cCCCEEEEEEC-CCcEEEEe
Q 011126          240 SATLKPGDHELTLGQRMRRVRVHPVK--KQSRELSSLYTGQEFLAHEGSILTMKFS----LDGQYLASGGE-DGTVRVWK  312 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~dg~V~vwd~~--~~~~~~~~~~~~~~l~~H~~~I~~l~fs----pdg~~Lasgs~-Dg~V~iWd  312 (493)
                      .+.|+|+|+++++++.++.|.+||+.  +...       ..++.... ....++|+    |||++|+++.+ +++|.|+|
T Consensus       201 ~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-------v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD  272 (567)
T 1qks_A          201 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-------VAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMD  272 (567)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCCE-------EEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEE
T ss_pred             ceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-------eEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEE
Confidence            58999999999999999999999985  2221       12333322 35789999    69998887765 58999999


Q ss_pred             cCCCeeeeeeeccCCC---------CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE
Q 011126          313 VIEHERLDGFDVQDTD---------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (493)
Q Consensus       313 l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  383 (493)
                      ..+.+.+..+......         +....+...+....+.             +.....+.+.+++......  ..+..
T Consensus       273 ~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v-------------v~~~~~g~v~~vd~~~~~~--~~v~~  337 (567)
T 1qks_A          273 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI-------------VNVKETGKILLVDYTDLNN--LKTTE  337 (567)
T ss_dssp             TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE-------------EEETTTTEEEEEETTCSSE--EEEEE
T ss_pred             CCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE-------------EEecCCCeEEEEecCCCcc--ceeee
Confidence            9999888877643211         1111111111111111             1112233333333221100  00111


Q ss_pred             EecCCCCEeEEEEeCCC-eE-EEEeCCCeEEEEECCCCcEEEEec------CCCcEEEEEEccCC-CCEEEEEe-CCCeE
Q 011126          384 FQGHSSEVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVD-DNYFISGS-IDGKV  453 (493)
Q Consensus       384 ~~~h~~~V~~l~~sp~g-~l-~sgs~Dg~V~lWd~~~~~~~~~~~------h~~~V~~v~fsp~d-~~~l~sgs-~Dg~V  453 (493)
                      + .......++.|+|+| ++ +++..+++|.++|+.+++.+..+.      |.+.-..+ ++| + +.+++++. .+++|
T Consensus       338 i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p-~~g~v~~t~~~g~~~V  414 (567)
T 1qks_A          338 I-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHP-TFGPVWATSHMGDDSV  414 (567)
T ss_dssp             E-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EET-TTEEEEEEEBSSSSEE
T ss_pred             e-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECC-CCCcEEEeCCCCCCeE
Confidence            2 233456788999999 55 455578999999999998876664      32211122 578 5 45555554 46899


Q ss_pred             EEEeCCC-------CeEEEe-cCCCCCeEEEEEccCCCEEEEee
Q 011126          454 RIWEVRR-------CQVVDY-TDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       454 ~IWdl~~-------~~~~~~-~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .++|...       .+++.. ......-..|..+|++++|.+..
T Consensus       415 svid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~  458 (567)
T 1qks_A          415 ALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  458 (567)
T ss_dssp             EEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             EEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence            9999987       556643 32223334577899999988765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.91  E-value=1.4e-06  Score=83.01  Aligned_cols=220  Identities=5%  Similarity=0.006  Sum_probs=139.8

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      ...++++.++|.+.++...++.|.+|+.. ...  ...    .+..+...+..|.+.++|.++++...++.|..||.. +
T Consensus        21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~--~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRI--KEF----EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-SCE--EEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CcceeeECCCCCEEEEcCCCCeEEEECCC-Cce--EEE----ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            44458899999988887788999999876 221  111    112344679999999999987777667889999987 5


Q ss_pred             eeeeeeeccC--CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEE
Q 011126          317 ERLDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (493)
Q Consensus       317 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  394 (493)
                      +. ..+....  ..+..+.+  .....++..              ......+..++.. ....   ...+......+..+
T Consensus        93 ~~-~~~~~~~~~~~~~~i~~--~~~g~l~v~--------------~~~~~~i~~~~~~-g~~~---~~~~~~~~~~~~~i  151 (300)
T 2qc5_A           93 GF-TEYPLPQPDSGPYGITE--GLNGDIWFT--------------QLNGDRIGKLTAD-GTIY---EYDLPNKGSYPAFI  151 (300)
T ss_dssp             CE-EEEECSSTTCCEEEEEE--CSTTCEEEE--------------ETTTTEEEEECTT-SCEE---EEECSSTTCCEEEE
T ss_pred             Ce-EEecCCCCCCCCccceE--CCCCCEEEE--------------ccCCCeEEEECCC-CCEE---EccCCCCCCCceeE
Confidence            43 2332221  11222222  222222222              1122334444433 1110   01122245678999


Q ss_pred             EEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe--cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCC
Q 011126          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDI  469 (493)
Q Consensus       395 ~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~--~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~  469 (493)
                      ++.++| ++++...++.|..||. +++.....  .+...+.++++.+ +++++++....+.|.+||. +++...+  ...
T Consensus       152 ~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~  228 (300)
T 2qc5_A          152 TLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITT-TGEISEYDIPTP  228 (300)
T ss_dssp             EECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred             EECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcC-CCcEEEEECCCC
Confidence            999998 6666666789999998 55544322  1446789999999 8888887777889999999 5555433  334


Q ss_pred             CCCeEEEEEccCCCEEEEe
Q 011126          470 REIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       470 ~~~I~sv~~spdG~~l~s~  488 (493)
                      ...+.++++.++|++.++.
T Consensus       229 ~~~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          229 NARPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             TCCEEEEEECSTTCEEEEE
T ss_pred             CCCceEEEECCCCCEEEec
Confidence            5678999999999866655

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.91  E-value=1.2e-07  Score=93.54  Aligned_cols=237  Identities=11%  Similarity=0.111  Sum_probs=134.2

Q ss_pred             ccccceeccCCCeEEeee--cCCeEEEEECCCccccccccccc-eeeecccCCEEEEEEccCCCEEEEEEC-----CCcE
Q 011126          237 RHGSATLKPGDHELTLGQ--RMRRVRVHPVKKQSRELSSLYTG-QEFLAHEGSILTMKFSLDGQYLASGGE-----DGTV  308 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs--~dg~V~vwd~~~~~~~~~~~~~~-~~l~~H~~~I~~l~fspdg~~Lasgs~-----Dg~V  308 (493)
                      ....++++|+|+++++..  .++.++||.+....  +..+... .....|-..+..|+|+++|+++++-..     ++.|
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            445589999999988854  23435555543221  2111100 112346678999999999876665433     5789


Q ss_pred             EEEecCCCeeeeeeeccCC------CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc---ee----
Q 011126          309 RVWKVIEHERLDGFDVQDT------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV---FR----  375 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~----  375 (493)
                      .+||+.+++.+..+..+..      .+..+.+.+.. ..++..+....           ....+.+++...   +.    
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~-g~~yvtd~~~~-----------~~~~i~v~d~~~g~~~r~~~~  163 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH-NFVYISDPAPD-----------DKAALIRVDLQTGLAARVLQG  163 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT-TEEEEEECCSG-----------GGCEEEEEETTTCCEEEECTT
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCC-CEEEEEcCccC-----------CCCeEEEEECCCCCEEEEecC
Confidence            9999999987777665321      12333333221 12222221000           112222222110   00    


Q ss_pred             ------------ecccceEEEec------CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCC-----c--------EEE
Q 011126          376 ------------LLEKPLHEFQG------HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-----R--------CLR  423 (493)
Q Consensus       376 ------------~~~~~~~~~~~------h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~-----~--------~~~  423 (493)
                                  ...+.+.....      ....+..|+|+|+| .|+.+..++. +||.+...     .        .+.
T Consensus       164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~  242 (343)
T 2qe8_A          164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIE  242 (343)
T ss_dssp             CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred             CCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceE
Confidence                        00000000000      11346889999999 7777766653 44544211     0        012


Q ss_pred             EecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecC--CCCCeEEEEEccCCCEEEEee
Q 011126          424 VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD--IREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       424 ~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~--~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .+.+......+++++ +++++++...++.|.+||..++++.....  ....+++++|.|+|+++++.+
T Consensus       243 ~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          243 RYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             EEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             ecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence            223344567799999 89999999999999999996666543322  245689999999998887765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.90  E-value=1.2e-07  Score=91.80  Aligned_cols=230  Identities=9%  Similarity=-0.021  Sum_probs=132.2

Q ss_pred             cceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126          240 SATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       240 ~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~  318 (493)
                      ...|+|+|+ +++++..++.|..|+....   .      ..+..+...+..+.++++|+++++...++.|.+|+.. ++.
T Consensus        49 gp~~~~~g~~l~~~d~~~~~i~~~~~~g~---~------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~  118 (305)
T 3dr2_A           49 GPAWWEAQRTLVWSDLVGRRVLGWREDGT---V------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA  118 (305)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEETTSC---E------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEeCCCC---E------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE
Confidence            478999998 6677778899999987422   1      1234466779999999999976665556789999975 443


Q ss_pred             eeeeeccC----CCCceEEEeeCCCCceeeeeccCcccc---ceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          319 LDGFDVQD----TDPSCLYFTINHLSQLIPIDVDKEKID---KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       319 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      ........    ..+..+.+.++  ..++..+.......   ............+..++.....     +..+. +....
T Consensus       119 ~~~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-----~~~~~-~~~~p  190 (305)
T 3dr2_A          119 HLLVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-----LQRMA-DLDHP  190 (305)
T ss_dssp             EEEECEETTEECSCCCCEEECTT--SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-----CEEEE-EESSE
T ss_pred             EEEEeccCCCccCCCCCEEECCC--CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc-----EEEEe-cCCCC
Confidence            22111110    11223333322  22322111000000   0000000112344555442211     11122 33456


Q ss_pred             eEEEEeCCC-eEEEEeCC------CeEEEEECCCCcEE--EEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          392 LDLSWSKNG-FLLSSSAD------KTVRLWQVGIDRCL--RVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       392 ~~l~~sp~g-~l~sgs~D------g~V~lWd~~~~~~~--~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      ..++|+|++ .|+.+...      +.|.+|++..+...  ..+.  .......+++.+ ++++.++. .+ .|.+|+.. 
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~-~G~lwv~~-~~-gv~~~~~~-  266 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR-GGWLWSSS-GT-GVCVFDSD-  266 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT-TSCEEECC-SS-EEEEECTT-
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECC-CCCEEEec-CC-cEEEECCC-
Confidence            789999999 56666554      78999998765411  1221  234456789999 88865554 44 49999985 


Q ss_pred             CeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          461 CQVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       461 ~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ++.+........+++++|.|+++.|.+++.+
T Consensus       267 g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          267 GQLLGHIPTPGTASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             SCEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred             CCEEEEEECCCceeEEEEeCCCCEEEEEcCC
Confidence            4444322233368999999999988877654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.86  E-value=9.4e-08  Score=104.56  Aligned_cols=242  Identities=12%  Similarity=0.005  Sum_probs=126.1

Q ss_pred             eccCCCeEEeeecCCe---EEEEECCCc---cccccccc-cceeeecccCCEEEEEEccCCCEEEEEECC-----CcEEE
Q 011126          243 LKPGDHELTLGQRMRR---VRVHPVKKQ---SRELSSLY-TGQEFLAHEGSILTMKFSLDGQYLASGGED-----GTVRV  310 (493)
Q Consensus       243 fsp~g~~lasgs~dg~---V~vwd~~~~---~~~~~~~~-~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-----g~V~i  310 (493)
                      ..|+|.+++....++.   -.||.....   ......+. ....-.+|...+..++|||||++||.+..+     ..|++
T Consensus       114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v  193 (741)
T 1yr2_A          114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF  193 (741)
T ss_dssp             CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence            4589998887665433   455543311   11111100 000112344578899999999999887654     36999


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      ||+.+++.+... ........+.|+++  ..++.......... ...........+..++..........+.....|...
T Consensus       194 ~dl~tg~~~~~~-~~~~~~~~~~wspD--~~l~~~~~~~~~~~-~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~  269 (741)
T 1yr2_A          194 VGVADGKPLADE-LKWVKFSGLAWLGN--DALLYSRFAEPKEG-QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR  269 (741)
T ss_dssp             EETTTCCEEEEE-EEEEESCCCEESTT--SEEEEEECCCC---------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred             EECCCCCCCCcc-CCCceeccEEEECC--CEEEEEEecCcccc-cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence            999998865431 11111123445444  22222222111000 000000112234444432211111112222233346


Q ss_pred             EeEEEEeCCC-eEEEEeCC-----CeEEEEECCCC--c-EEEEecCCCcEEEEEEccCCCCEEEEEeC----CCeEEEEe
Q 011126          391 VLDLSWSKNG-FLLSSSAD-----KTVRLWQVGID--R-CLRVFSHNNYVTSVAFNPVDDNYFISGSI----DGKVRIWE  457 (493)
Q Consensus       391 V~~l~~sp~g-~l~sgs~D-----g~V~lWd~~~~--~-~~~~~~h~~~V~~v~fsp~d~~~l~sgs~----Dg~V~IWd  457 (493)
                      +..+.|+|+| +|+..+.+     ..|++||+.++  . ......+...+.... .| +++.|+..+.    ++.|.+||
T Consensus       270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d  347 (741)
T 1yr2_A          270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVD  347 (741)
T ss_dssp             EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEe
Confidence            8899999999 66666543     48999999876  4 333334555555554 47 7888887775    35699999


Q ss_pred             CCCC--eEEEe-cCCCCCeEEEEEccCCCEEEEeecC
Q 011126          458 VRRC--QVVDY-TDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       458 l~~~--~~~~~-~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      +.++  +...+ ..+...+..++|. ++.++++...+
T Consensus       348 ~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~d  383 (741)
T 1yr2_A          348 LSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHD  383 (741)
T ss_dssp             CSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEET
T ss_pred             CCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEEC
Confidence            9874  44443 3444456677777 55555555433

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.85  E-value=1.6e-06  Score=82.59  Aligned_cols=221  Identities=6%  Similarity=0.023  Sum_probs=136.8

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~  317 (493)
                      +..+++.++|.+.++...++.|.+++.. ....  ..    .+......+..|++.++|+++++...++.|..|+.. ++
T Consensus        64 ~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~--~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~  135 (300)
T 2qc5_A           64 VMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT--EY----PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT  135 (300)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-SCEE--EE----ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred             ceeEEECCCCCEEEEecCCCeEEEECCC-CCeE--Ee----cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC
Confidence            3457888999888877778899999876 2211  11    112234678999999999988877668889999986 44


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (493)
                      .. .+...........+.......++...              .....+..++... ...   ......+...+..+++.
T Consensus       136 ~~-~~~~~~~~~~~~~i~~d~~g~l~v~~--------------~~~~~i~~~~~~g-~~~---~~~~~~~~~~~~~i~~d  196 (300)
T 2qc5_A          136 IY-EYDLPNKGSYPAFITLGSDNALWFTE--------------NQNNSIGRITNTG-KLE---EYPLPTNAAAPVGITSG  196 (300)
T ss_dssp             EE-EEECSSTTCCEEEEEECTTSSEEEEE--------------TTTTEEEEECTTC-CEE---EEECSSTTCCEEEEEEC
T ss_pred             EE-EccCCCCCCCceeEEECCCCCEEEEe--------------cCCCeEEEECCCC-cEE---EeeCCCCCCCcceEEEC
Confidence            33 22222111111222222222222221              1222334443311 100   01112345678899999


Q ss_pred             CCC-eEEEEeCCCeEEEEECCCCcEEEE-ec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCCCC
Q 011126          398 KNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREI  472 (493)
Q Consensus       398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~-~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~~~~  472 (493)
                      ++| ++++....+.|.+||. ++..... +. +...+.++++.| +++++++...++.|.+||. ++++..+  ......
T Consensus       197 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~  273 (300)
T 2qc5_A          197 NDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAE  273 (300)
T ss_dssp             TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCC
T ss_pred             CCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC-CCcEEEEECCccCCc
Confidence            998 5555556778999998 4544433 22 456789999999 8888777767899999998 5555533  334456


Q ss_pred             eEEEEEccCCCEEEEe
Q 011126          473 VSAVCYCPDGKVRQNS  488 (493)
Q Consensus       473 I~sv~~spdG~~l~s~  488 (493)
                      +.++++.++|++.++.
T Consensus       274 ~~~i~~~~~g~l~v~~  289 (300)
T 2qc5_A          274 PHGITFGKDGSVWFAL  289 (300)
T ss_dssp             CCCEEECTTSCEEEEC
T ss_pred             cceeEeCCCCCEEEEc
Confidence            8999999999977665

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.84  E-value=1.7e-07  Score=92.02  Aligned_cols=180  Identities=10%  Similarity=0.051  Sum_probs=118.1

Q ss_pred             ccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE--CCCcEEEEecCCC
Q 011126          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG--EDGTVRVWKVIEH  316 (493)
Q Consensus       239 ~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs--~Dg~V~iWdl~~~  316 (493)
                      ..+++++++.+.++...++.|.+||..+..... .+.... ..++......|++ . +..|+.+.  .++.|.+||+.++
T Consensus        87 ~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~-~i~~g~-~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A           87 RYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG-YIECPD-MDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETD  162 (328)
T ss_dssp             EEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE-EEECTT-CCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTT
T ss_pred             cEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE-EEEcCC-ccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCC
Confidence            348898998655555478999999987544221 110000 0011124456677 3 44555554  4889999999888


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (493)
                      +....+..                                                               ......+++
T Consensus       163 ~~~~~i~~---------------------------------------------------------------g~~p~~i~~  179 (328)
T 3dsm_A          163 KVVDELTI---------------------------------------------------------------GIQPTSLVM  179 (328)
T ss_dssp             EEEEEEEC---------------------------------------------------------------SSCBCCCEE
T ss_pred             eEEEEEEc---------------------------------------------------------------CCCccceEE
Confidence            75443321                                                               112346778


Q ss_pred             eCCC-eEEEEeCC----------CeEEEEECCCCcEEEEecC--CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          397 SKNG-FLLSSSAD----------KTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       397 sp~g-~l~sgs~D----------g~V~lWd~~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      +|+| +++++..+          +.|.++|..+++....+..  ......++|+| ++++|.++..  .|.+||+.++++
T Consensus       180 ~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          180 DKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             CTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSSC
T ss_pred             cCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCce
Confidence            8888 55555444          7899999999988877763  45789999999 8888877654  899999998886


Q ss_pred             EE--ecCC-CCCeEEEEEccC-CCEEEEe
Q 011126          464 VD--YTDI-REIVSAVCYCPD-GKVRQNS  488 (493)
Q Consensus       464 ~~--~~~~-~~~I~sv~~spd-G~~l~s~  488 (493)
                      ..  +... ......++++|+ |.++++.
T Consensus       257 ~~~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          257 PVRPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             CSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             eeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence            52  2221 467899999995 5554443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.83  E-value=6.5e-08  Score=98.14  Aligned_cols=238  Identities=10%  Similarity=0.019  Sum_probs=135.5

Q ss_pred             cceeccCCCeEEeee----------cCCeEEEEECCCccccccccccc--eeeecccCCEEEEEEccCCCEEEEEEC--C
Q 011126          240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGE--D  305 (493)
Q Consensus       240 ~~~fsp~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~~--~~l~~H~~~I~~l~fspdg~~Lasgs~--D  305 (493)
                      .++++|+|++|+++.          .++.|.++|..+....-. +...  ..+. .......+.|+|||++|+.+..  +
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~-I~v~g~~r~~-~g~~P~~~~~spDGk~lyV~n~~~~  199 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIAD-IELPDAPRFL-VGTYQWMNALTPDNKNLLFYQFSPA  199 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE-EEETTCCCCC-BSCCGGGSEECTTSSEEEEEECSSS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEE-EECCCccccc-cCCCcceEEEcCCCCEEEEEecCCC
Confidence            489999999888876          467899999876543211 1000  0000 0122346899999999998874  5


Q ss_pred             CcEEEEecCCCeeeeeeeccCCC-----CceEEEeeCCCCceeeeeccCccccce---------------e--------e
Q 011126          306 GTVRVWKVIEHERLDGFDVQDTD-----PSCLYFTINHLSQLIPIDVDKEKIDKT---------------K--------S  357 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~--------~  357 (493)
                      +.|.+.|+.+++.+..+......     ....++.......+..+.....++...               .        .
T Consensus       200 ~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~  279 (426)
T 3c75_H          200 PAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRL  279 (426)
T ss_dssp             CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred             CeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEE
Confidence            78999999999998888763210     000111222233333333322211100               0        0


Q ss_pred             eecCCCceEEEcCCCceeec-ccceEEEe-------cCCCCEeEEEEeCCC-eEEEEe----------CCCeEEEEECCC
Q 011126          358 LRKSSDLTCVVLPPKVFRLL-EKPLHEFQ-------GHSSEVLDLSWSKNG-FLLSSS----------ADKTVRLWQVGI  418 (493)
Q Consensus       358 ~~~s~~~~~~~~~~~~~~~~-~~~~~~~~-------~h~~~V~~l~~sp~g-~l~sgs----------~Dg~V~lWd~~~  418 (493)
                      +.....+.+.+.+....... ..+.....       -.......++++|++ +++...          ..+.|.+.|+.+
T Consensus       280 ~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T  359 (426)
T 3c75_H          280 VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET  359 (426)
T ss_dssp             EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred             EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC
Confidence            00011122222222100000 00000000       001112236899987 444432          135799999999


Q ss_pred             CcEEEEecCCCcEEEEEEccCCCC-EEEEEe-CCCeEEEEeCCCCeEEEec-CCCCCeEEEEEccC
Q 011126          419 DRCLRVFSHNNYVTSVAFNPVDDN-YFISGS-IDGKVRIWEVRRCQVVDYT-DIREIVSAVCYCPD  481 (493)
Q Consensus       419 ~~~~~~~~h~~~V~~v~fsp~d~~-~l~sgs-~Dg~V~IWdl~~~~~~~~~-~~~~~I~sv~~spd  481 (493)
                      .+.+..+.-......|.|+| +++ ++++.. .++.|.|+|+.+++++... ....... +..+||
T Consensus       360 ~kvv~~I~vg~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P~-~i~~~~  423 (426)
T 3c75_H          360 GERINKIELGHEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGPQ-IITTHD  423 (426)
T ss_dssp             CCEEEEEEEEEEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSCC-EEECCC
T ss_pred             CeEEEEEECCCCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCCc-EEEcCC
Confidence            99999998666799999999 888 888877 5999999999999998643 3333222 445554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.79  E-value=9e-07  Score=96.76  Aligned_cols=226  Identities=12%  Similarity=-0.035  Sum_probs=129.0

Q ss_pred             cccceeccCCCeEEeeecC-----CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc-----
Q 011126          238 HGSATLKPGDHELTLGQRM-----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT-----  307 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~d-----g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~-----  307 (493)
                      +...+|+|||++||.+..+     ..|++||+.+.....        ...+...+..+.|+|| +.|+.+..|+.     
T Consensus       165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~--------~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA--------DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE--------EEEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred             EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC--------ccCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence            4458999999999887654     469999998655311        1111112357899999 99988887654     


Q ss_pred             ---------EEEEecCCCeee--eeeeccCCC--CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126          308 ---------VRVWKVIEHERL--DGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (493)
Q Consensus       308 ---------V~iWdl~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (493)
                               |++|++.++...  ..+......  .....+++++...++.. ...          ......+.+++....
T Consensus       236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~-~~~----------~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITS-SEG----------TDPVNTVHVARVTNG  304 (741)
T ss_dssp             ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE-ECT----------TCSCCEEEEEEEETT
T ss_pred             cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEE-Ecc----------CCCcceEEEEECCCC
Confidence                     889998776521  122221111  22233333322111111 100          001223444432211


Q ss_pred             eecccc-eEEEecCCCCEeEEEEeCCC-eEEEEeC----CCeEEEEECCCC--cEEEEec-CCCcEEEEEEccCCCCEEE
Q 011126          375 RLLEKP-LHEFQGHSSEVLDLSWSKNG-FLLSSSA----DKTVRLWQVGID--RCLRVFS-HNNYVTSVAFNPVDDNYFI  445 (493)
Q Consensus       375 ~~~~~~-~~~~~~h~~~V~~l~~sp~g-~l~sgs~----Dg~V~lWd~~~~--~~~~~~~-h~~~V~~v~fsp~d~~~l~  445 (493)
                      .   .. ...+..+...+.... +|+| .|+..+.    .+.|.+||+.++  .....+. +...+..+.|.  ++.+++
T Consensus       305 ~---~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~  378 (741)
T 1yr2_A          305 K---IGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFA  378 (741)
T ss_dssp             E---ECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEE
T ss_pred             C---CcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEE
Confidence            0   02 344555555555553 4777 6665554    345999999874  3444444 44556677776  467888


Q ss_pred             EEeCCCeEEEEeCC-CCeEE-EecC-CCCCeEEEEEccCCCEEEEee
Q 011126          446 SGSIDGKVRIWEVR-RCQVV-DYTD-IREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       446 sgs~Dg~V~IWdl~-~~~~~-~~~~-~~~~I~sv~~spdG~~l~s~s  489 (493)
                      +...|+..+||.+. +++.. .+.. ....+..++++|+++.++...
T Consensus       379 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~  425 (741)
T 1yr2_A          379 SYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSF  425 (741)
T ss_dssp             EEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEE
T ss_pred             EEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEE
Confidence            88899987777554 34433 3332 356788999999998666443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.78  E-value=2.9e-07  Score=88.07  Aligned_cols=171  Identities=10%  Similarity=0.075  Sum_probs=119.9

Q ss_pred             CCCEEEEEECCCcEEEEecCCCeeeeeeeccC-CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc
Q 011126          295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV  373 (493)
Q Consensus       295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  373 (493)
                      .+++|++++.|+.|.+||..+++.+..+..+. ..+..+.+.+++.  ++. .               .+..+..++.. 
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~--ilv-s---------------~~~~V~~~d~~-   64 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE--ILF-S---------------YSKGAKMITRD-   64 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC--EEE-E---------------CBSEEEEECTT-
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC--EEE-e---------------CCCCEEEECCC-
Confidence            35789999999999999999999998888765 3455555555432  222 1               12234444442 


Q ss_pred             eeecccceEEEecC-CCCEeEEEEeCCC-eEEEEeC-CCeEEEEECCCCcEEEEecC-------CCcEEEEEEccCCCCE
Q 011126          374 FRLLEKPLHEFQGH-SSEVLDLSWSKNG-FLLSSSA-DKTVRLWQVGIDRCLRVFSH-------NNYVTSVAFNPVDDNY  443 (493)
Q Consensus       374 ~~~~~~~~~~~~~h-~~~V~~l~~sp~g-~l~sgs~-Dg~V~lWd~~~~~~~~~~~h-------~~~V~~v~fsp~d~~~  443 (493)
                          .+.+..+..+ ...+.++.+.++| ++++.+. ++.|..+|. .++.+..+..       ......+.+.+ ++++
T Consensus        65 ----G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~  138 (276)
T 3no2_A           65 ----GRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNY  138 (276)
T ss_dssp             ----SCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCE
T ss_pred             ----CCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCE
Confidence                2234445543 3468889999999 7777776 778888885 6777766641       12345567888 9999


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          444 FISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       444 l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      |++...+++|..||.. ++++........+.++...++|++++++..+
T Consensus       139 lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~  185 (276)
T 3no2_A          139 LVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDA  185 (276)
T ss_dssp             EEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTT
T ss_pred             EEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCC
Confidence            9999999999999998 8877544444566778889999998877654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.77  E-value=9.4e-08  Score=95.28  Aligned_cols=229  Identities=7%  Similarity=-0.067  Sum_probs=132.6

Q ss_pred             cceeccCCCeEEeee----------cCCeEEEEECCCccccccccccceeeecc-------cCCEEEEEEccCCCEEEEE
Q 011126          240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLAH-------EGSILTMKFSLDGQYLASG  302 (493)
Q Consensus       240 ~~~fsp~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~~~~l~~H-------~~~I~~l~fspdg~~Lasg  302 (493)
                      .+.++|++++++++.          .++.|.+||..+.+..       .++..+       ......+.|+|||++|+.+
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-------~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVa  141 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-------ADIELPDAPRFSVGPRVHIIGNCASSACLLFF  141 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-------EEEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE-------EEEECCCccccccCCCcceEEEcCCCCEEEEE
Confidence            389999999998886          4789999998865532       222211       1234578999999999988


Q ss_pred             EC--CCcEEE--EecCCCeeeeeeeccCCC-----CceEEEeeCCCCceeeeeccC-----ccccce----eee-----e
Q 011126          303 GE--DGTVRV--WKVIEHERLDGFDVQDTD-----PSCLYFTINHLSQLIPIDVDK-----EKIDKT----KSL-----R  359 (493)
Q Consensus       303 s~--Dg~V~i--Wdl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~~~-----~  359 (493)
                      ..  +..|.+  +|+.+   +..+......     ....++.....+.+..++...     ++....    ...     .
T Consensus       142 n~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~  218 (368)
T 1mda_H          142 LFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ  218 (368)
T ss_dssp             ECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE
T ss_pred             ccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccc
Confidence            75  457888  99877   3444332110     000112222223333333332     111100    000     0


Q ss_pred             cCCC--------ceEEEcCCCceeecccceEEEe-------cC---CCCEeEEEEeCCC-eEEEE-e---C-----CCeE
Q 011126          360 KSSD--------LTCVVLPPKVFRLLEKPLHEFQ-------GH---SSEVLDLSWSKNG-FLLSS-S---A-----DKTV  411 (493)
Q Consensus       360 ~s~~--------~~~~~~~~~~~~~~~~~~~~~~-------~h---~~~V~~l~~sp~g-~l~sg-s---~-----Dg~V  411 (493)
                      ....        +.+.+.+.....  .+.+..+.       .+   ......++++|++ .++.+ .   .     ++.+
T Consensus       219 ~~~~~~~~~vs~~~V~viD~~~~~--~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~  296 (368)
T 1mda_H          219 ANYPGMLVWAVASSILQGDIPAAG--ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT  296 (368)
T ss_dssp             ETTTTEEEECBSSCCEEEECCSSC--CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred             cccCCEEEEEcCCEEEEEECCCCc--ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE
Confidence            0001        112222211000  00000000       00   0111226899998 55443 3   2     2456


Q ss_pred             EEEECCCCcEEEEecCCCcEEEEEEccCCCC-EEEEEe-CCCeEEEEeCCCCeEEEecCCCCCeEEEEEccC
Q 011126          412 RLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGS-IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD  481 (493)
Q Consensus       412 ~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~-~l~sgs-~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spd  481 (493)
                      .++|+.+.+.+..+.-.....+|.|+| +++ ++++.. .++.|.++|+.+++++...........+++++.
T Consensus       297 ~ViD~~t~~vv~~i~vg~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~~  367 (368)
T 1mda_H          297 SSVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQNE  367 (368)
T ss_dssp             EEEESSSCCEEECCEEEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCCC
T ss_pred             EEEECCCCeEEEEEECCCCcceEEECC-CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeecC
Confidence            699999999999987666799999999 886 667777 599999999999999987766667777777653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.74  E-value=9.7e-06  Score=81.01  Aligned_cols=231  Identities=8%  Similarity=-0.105  Sum_probs=129.4

Q ss_pred             eccCCCeEEeeec--CC---eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE----------CCCc
Q 011126          243 LKPGDHELTLGQR--MR---RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGT  307 (493)
Q Consensus       243 fsp~g~~lasgs~--dg---~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~  307 (493)
                      ..|+++++.+...  ..   +|.++|..+.+..       .++.....+  .+.|+|||++|+.+.          .++.
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~-------~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~   98 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-------GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY   98 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEE-------EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCe
Confidence            3467776666543  22   8899998754421       233333334  899999999998875          3678


Q ss_pred             EEEEecCCCeeeeeeecc-------CCCCceEEEeeCC----------CCceeeeeccCccccce-eee-----------
Q 011126          308 VRVWKVIEHERLDGFDVQ-------DTDPSCLYFTINH----------LSQLIPIDVDKEKIDKT-KSL-----------  358 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~-----------  358 (493)
                      |.+||..+.+.+..+...       ...+..+.+++++          ...+..++ ...+.... ...           
T Consensus        99 v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~  177 (373)
T 2mad_H           99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAP  177 (373)
T ss_pred             EEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCC
Confidence            999999998887776654       1122333333332          23344444 33332211 100           


Q ss_pred             ----ecCCCceEEEcCCCceeecccceEEEe-----cCCCCE-eEEEEeCCC-eEEEEeCCCeEEEEECCCCc--EEEEe
Q 011126          359 ----RKSSDLTCVVLPPKVFRLLEKPLHEFQ-----GHSSEV-LDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVF  425 (493)
Q Consensus       359 ----~~s~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~V-~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~--~~~~~  425 (493)
                          ....++.+.+++. ...    .+....     ....++ ....+.+++ .++..+..+.|.+.|+....  .+..+
T Consensus       178 ~~~~~~~~dg~~~~vd~-~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~  252 (373)
T 2mad_H          178 STFYLLCAQGGLAKTDH-AGG----AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI  252 (373)
T ss_pred             ceEEEEcCCCCEEEEEC-CCc----EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeee
Confidence                0111222222222 110    010000     111111 223455555 33333467889999987542  22333


Q ss_pred             c-----------CCCcEEEEEEccCCCCEEEEEeC----------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCC-
Q 011126          426 S-----------HNNYVTSVAFNPVDDNYFISGSI----------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-  483 (493)
Q Consensus       426 ~-----------h~~~V~~v~fsp~d~~~l~sgs~----------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~-  483 (493)
                      .           ......-+.++| +++.+.....          .+.|.++|+.+++++...........+.|+|||+ 
T Consensus       253 ~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~  331 (373)
T 2mad_H          253 DALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGP  331 (373)
T ss_pred             eecCCcccccceecCceEeEEECC-CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCe
Confidence            2           122344578899 7776666543          3589999999999987556666789999999999 


Q ss_pred             EEEEee
Q 011126          484 VRQNSA  489 (493)
Q Consensus       484 ~l~s~s  489 (493)
                      .++++.
T Consensus       332 ~l~v~~  337 (373)
T 2mad_H          332 DLYALS  337 (373)
T ss_pred             EEEEEc
Confidence            666654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.74  E-value=5.6e-07  Score=97.64  Aligned_cols=225  Identities=12%  Similarity=0.070  Sum_probs=129.8

Q ss_pred             cccceeccCCCeEEe-----eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc-----
Q 011126          238 HGSATLKPGDHELTL-----GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT-----  307 (493)
Q Consensus       238 ~~~~~fsp~g~~las-----gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~-----  307 (493)
                      +..++|+|||++||.     |+....|+|||+.++.....      .+...  ....++|+ ||+.|+.+..+..     
T Consensus       131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~  201 (693)
T 3iuj_A          131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------PLKDV--KFSGISWL-GNEGFFYSSYDKPDGSEL  201 (693)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------EEEEE--ESCCCEEE-TTTEEEEEESSCCC----
T ss_pred             EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------ccCCc--eeccEEEe-CCCEEEEEEecCcccccc
Confidence            334789999999984     44446899999986552110      11111  12467899 9999999888744     


Q ss_pred             --------EEEEecCCCeee--eeeeccC-CCC--ceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126          308 --------VRVWKVIEHERL--DGFDVQD-TDP--SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (493)
Q Consensus       308 --------V~iWdl~~~~~~--~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (493)
                              |++|++.+....  ..+.... ...  ....+++++.  .+.+...          .......+.+++....
T Consensus       202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~--~l~~~~~----------~~~~~~~i~~~d~~~~  269 (693)
T 3iuj_A          202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDR--FLLISAA----------NSTSGNRLYVKDLSQE  269 (693)
T ss_dssp             ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSC--EEEEEEE----------SSSSCCEEEEEETTST
T ss_pred             cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCC--EEEEEEc----------cCCCCcEEEEEECCCC
Confidence                    999999776531  1222211 111  2233333322  1111111          1111223444433211


Q ss_pred             eecccceEEEecCCCCEeEEEEeCCC--eEEEEeCC---CeEEEEECCCCcE---EEEecCCCcEEEEEEccCCCCEEEE
Q 011126          375 RLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSAD---KTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFIS  446 (493)
Q Consensus       375 ~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~D---g~V~lWd~~~~~~---~~~~~h~~~V~~v~fsp~d~~~l~s  446 (493)
                         ......+..+....... |+++|  +++....+   +.|.++|+.++..   .....|...+.  .|+| ++++|+.
T Consensus       270 ---~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~-~g~~lv~  342 (693)
T 3iuj_A          270 ---NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS-GSGYLFA  342 (693)
T ss_dssp             ---TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE-ETTEEEE
T ss_pred             ---CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE-ECCEEEE
Confidence               11244555666665555 56655  44454443   6799999987654   33344655554  8899 7787776


Q ss_pred             EeC-CC--eEEEEeCCCCeEEEec-CCCCCeEEEEEccCCCEEEEeec
Q 011126          447 GSI-DG--KVRIWEVRRCQVVDYT-DIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       447 gs~-Dg--~V~IWdl~~~~~~~~~-~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ... ++  .|++|++.++....+. .....+..+.++|+++.++....
T Consensus       343 ~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~s  390 (693)
T 3iuj_A          343 EYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFE  390 (693)
T ss_dssp             EEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEE
T ss_pred             EEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEec
Confidence            655 44  7999999876554432 33456778888999887765543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.73  E-value=5.5e-07  Score=89.88  Aligned_cols=239  Identities=10%  Similarity=0.038  Sum_probs=142.9

Q ss_pred             ceeccCCCeEEeeec-----CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE----------CC
Q 011126          241 ATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------ED  305 (493)
Q Consensus       241 ~~fsp~g~~lasgs~-----dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~D  305 (493)
                      ....|+++.+.+...     ++.|.+.|..+.+.       ..++.....+ . +.++|||++|+.+.          .+
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-------~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE-------EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence            456799988877654     68999999875442       2234333444 4 99999999887765          36


Q ss_pred             CcEEEEecCCCeeeeeeeccC-------CCCceEEEeeCC----------CCceeeeeccCccccceee-----------
Q 011126          306 GTVRVWKVIEHERLDGFDVQD-------TDPSCLYFTINH----------LSQLIPIDVDKEKIDKTKS-----------  357 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~-------~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-----------  357 (493)
                      +.|.+||..+.+.+..+....       ..+..+.+++++          ...+..++....++.....           
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g  188 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA  188 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCC
Confidence            789999999999988886543       123334433332          2334444444444322221           


Q ss_pred             ----eecCCCceEEEcCCCc-eeecccceEEEecCCCCEe-EEEEe-CCCeEEEEeCCCeEEEEECCCCc--EEEEec--
Q 011126          358 ----LRKSSDLTCVVLPPKV-FRLLEKPLHEFQGHSSEVL-DLSWS-KNGFLLSSSADKTVRLWQVGIDR--CLRVFS--  426 (493)
Q Consensus       358 ----~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~-~l~~s-p~g~l~sgs~Dg~V~lWd~~~~~--~~~~~~--  426 (493)
                          +..+.++..++++... ..+.......+.....++. ...|. ++|.++-.+.+++|.+.|+.+..  .+..+.  
T Consensus       189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~  268 (386)
T 3sjl_D          189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL  268 (386)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred             CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecc
Confidence                1233444554444432 1110000000111112222 24664 56755456678999999997654  332221  


Q ss_pred             ---------CCCcEEEEEEccCCCCEEEEEeC----------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCC-EEE
Q 011126          427 ---------HNNYVTSVAFNPVDDNYFISGSI----------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-VRQ  486 (493)
Q Consensus       427 ---------h~~~V~~v~fsp~d~~~l~sgs~----------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~-~l~  486 (493)
                               .......++++| +++.+.....          .+.|.+.|+.+++++........+++|.++|||+ .|+
T Consensus       269 ~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly  347 (386)
T 3sjl_D          269 TEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLY  347 (386)
T ss_dssp             CHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEE
T ss_pred             ccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEE
Confidence                     112333577788 6666665532          2579999999999997666667899999999997 666


Q ss_pred             Eee
Q 011126          487 NSA  489 (493)
Q Consensus       487 s~s  489 (493)
                      ++.
T Consensus       348 ~tn  350 (386)
T 3sjl_D          348 ALS  350 (386)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.66  E-value=2.4e-06  Score=82.23  Aligned_cols=203  Identities=8%  Similarity=0.052  Sum_probs=115.1

Q ss_pred             ccccceeccC-CCeEEeeecCCeEEEEECCCcccccccc-ccceeeecccCCEEEEEEccCCCEEEEEECC---------
Q 011126          237 RHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSL-YTGQEFLAHEGSILTMKFSLDGQYLASGGED---------  305 (493)
Q Consensus       237 ~~~~~~fsp~-g~~lasgs~dg~V~vwd~~~~~~~~~~~-~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---------  305 (493)
                      .+..++++++ |.++++.. .+.|.+|+.. ....  .+ ... ....+...+.+++++++|+++++...+         
T Consensus        72 ~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~--~~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           72 IPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFE--EIAKKD-SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             CEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEE--ECCSBC-TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEE--EEEecc-CCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            3456889999 76555544 4478889877 3211  11 100 001122458899999999988776655         


Q ss_pred             ------CcEEEEecCCCeeeeeeeccCCCCceEEEeeC--CCCceeeeeccCccccceeeeecCCCceEEEcCCC-ceee
Q 011126          306 ------GTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN--HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK-VFRL  376 (493)
Q Consensus       306 ------g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~  376 (493)
                            +.|..|+.. ++...... ....+..+.+...  ....             ...+.......+..++.. ...+
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~-------------~l~v~~~~~~~i~~~~~~~~g~~  211 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPY-------------QLIVAETPTKKLWSYDIKGPAKI  211 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEE-------------EEEEEETTTTEEEEEEEEETTEE
T ss_pred             cccCCCCeEEEECCC-CCEEEecc-CCCCcceEEEecccCCCCC-------------EEEEEECCCCeEEEEECCCCCcc
Confidence                  456666654 43322111 1111222222200  1110             111111222333333321 0000


Q ss_pred             c-ccceEEEecCC-CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCC-EEEEEeCCC
Q 011126          377 L-EKPLHEFQGHS-SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN-YFISGSIDG  451 (493)
Q Consensus       377 ~-~~~~~~~~~h~-~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~-~l~sgs~Dg  451 (493)
                      . ......+.++. ..+..++++++| ++++...++.|.+||..+++.+..+. +...+.+++|+| +++ ++++...++
T Consensus       212 ~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~  290 (314)
T 1pjx_A          212 ENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENN  290 (314)
T ss_dssp             EEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTT
T ss_pred             ccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCC
Confidence            0 01122333444 567889999999 66676788999999998777766665 557899999999 888 555555678


Q ss_pred             eEEEEeCCC
Q 011126          452 KVRIWEVRR  460 (493)
Q Consensus       452 ~V~IWdl~~  460 (493)
                      .|..|++..
T Consensus       291 ~l~~~~~~~  299 (314)
T 1pjx_A          291 AVWKFEWQR  299 (314)
T ss_dssp             EEEEEECSS
T ss_pred             eEEEEeCCC
Confidence            999999874

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.54  E-value=7.1e-08  Score=96.48  Aligned_cols=205  Identities=10%  Similarity=0.011  Sum_probs=108.3

Q ss_pred             CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeecc
Q 011126          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (493)
Q Consensus       246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~  325 (493)
                      ++..+++++.||.|+.||..+.+..-.       +..  +.+.+..+..++..+++++.||.|+.||..+++.+..+...
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~-------~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWT-------LKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEE-------EEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEE-------ecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence            567899999999999999876553211       122  34444555567878888889999999999888875554322


Q ss_pred             CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEE
Q 011126          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS  404 (493)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~s  404 (493)
                      .....       ....+.   ..     ....+.++.++.++.++....+.    +..+..+.    ...++|.+ .+++
T Consensus        79 ~~~~~-------~~sp~~---~~-----~~~v~~g~~dg~v~a~D~~tG~~----~w~~~~~~----~~~~~p~~~~v~~  135 (369)
T 2hz6_A           79 IPELV-------QASPCR---SS-----DGILYMGKKQDIWYVIDLLTGEK----QQTLSSAF----ADSLSPSTSLLYL  135 (369)
T ss_dssp             HHHHH-------TTCSCC-------------CCCCEEEEEEEEECCC------------------------------EEE
T ss_pred             Ccccc-------ccCceE---ec-----CCEEEEEeCCCEEEEEECCCCcE----EEEecCCC----cccccccCCEEEE
Confidence            10000       000000   00     00112233455666676654332    22222222    13455666 8888


Q ss_pred             EeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCC---CEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEE-EEEcc
Q 011126          405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD---NYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA-VCYCP  480 (493)
Q Consensus       405 gs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~---~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~s-v~~sp  480 (493)
                      ++.|+.|+.||..+++.+..+.... .....+.+ +.   ..+++++.||.|+.||..+++++.......++.. ..+++
T Consensus       136 ~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~  213 (369)
T 2hz6_A          136 GRTEYTITMYDTKTRELRWNATYFD-YAASLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQR  213 (369)
T ss_dssp             EEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTT
T ss_pred             EecCCEEEEEECCCCCEEEeEeccc-ccCccccC-CccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecC
Confidence            9999999999999998776654211 12233333 21   5677788999999999999998754445555544 45667


Q ss_pred             CCCE
Q 011126          481 DGKV  484 (493)
Q Consensus       481 dG~~  484 (493)
                      +|..
T Consensus       214 dg~~  217 (369)
T 2hz6_A          214 EGLR  217 (369)
T ss_dssp             SSCE
T ss_pred             CceE
Confidence            7754

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.51  E-value=2.1e-06  Score=93.11  Aligned_cols=200  Identities=11%  Similarity=0.074  Sum_probs=110.8

Q ss_pred             cccCCEEEEEEccCCCEEEEE-----ECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCcccccee
Q 011126          282 AHEGSILTMKFSLDGQYLASG-----GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (493)
Q Consensus       282 ~H~~~I~~l~fspdg~~Lasg-----s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (493)
                      +|...|..+.|||||++||-+     +.+.+|++||+.+++.+... ........+.|+ ++.. ++.........  ..
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~-l~y~~~~~~~~--~~  200 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEG-FFYSSYDKPDG--SE  200 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTE-EEEEESSCCC-----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCE-EEEEEecCccc--cc
Confidence            466689999999999988843     33357999999999865431 111112234555 4332 22222211100  00


Q ss_pred             eeecCCCceEEEcCCCceeecccceEEEec-CCCCEeEEEEeCCC-eE-EEEeC---CCeEEEEECCCC--cEEEEecCC
Q 011126          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKNG-FL-LSSSA---DKTVRLWQVGID--RCLRVFSHN  428 (493)
Q Consensus       357 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g-~l-~sgs~---Dg~V~lWd~~~~--~~~~~~~h~  428 (493)
                      .........+..+...........+..... |...+..+.|+|+| +| ++.+.   ...|++||+.++  .......+.
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~  280 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL  280 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence            000011223444433221111112222233 45567889999999 44 44432   358999999876  333333455


Q ss_pred             CcEEEEEEccCCCCEE-EEEeCC---CeEEEEeCCCCeE---EEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          429 NYVTSVAFNPVDDNYF-ISGSID---GKVRIWEVRRCQV---VDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       429 ~~V~~v~fsp~d~~~l-~sgs~D---g~V~IWdl~~~~~---~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ...... |++ ++..| +....+   ++|.+||+.++..   ..+..+...+.  .|+|+|+.|+....
T Consensus       281 ~~~~~~-~~~-~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~  345 (693)
T 3iuj_A          281 DADVSL-VDN-KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM  345 (693)
T ss_dssp             SSCEEE-EEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE
T ss_pred             CceEEE-Eec-cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE
Confidence            555555 566 45544 444443   6899999987653   34455555554  89999998887654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.46  E-value=1.4e-05  Score=76.94  Aligned_cols=191  Identities=12%  Similarity=0.064  Sum_probs=105.5

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC---------Cc
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---------GT  307 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---------g~  307 (493)
                      .+.+++++|+|+++++.  ++.|.+|+..+....  .+... ........++.++++|+|+++++....         ..
T Consensus        55 ~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~--~~~~~-~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~  129 (297)
T 3g4e_A           55 PVSSVALRQSGGYVATI--GTKFCALNWKEQSAV--VLATV-DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ  129 (297)
T ss_dssp             CEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEE--EEEEC-CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred             ceEEEEECCCCCEEEEE--CCeEEEEECCCCcEE--EEEec-CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence            34568899999965553  568999998654321  11000 000112458899999999977654322         33


Q ss_pred             EEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCC--Cceeec-ccceEEE
Q 011126          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP--KVFRLL-EKPLHEF  384 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~~~~-~~~~~~~  384 (493)
                      ..||.+........+......+..+.+.++.. .++..+.              ....+..++.  ....+. .+.+..+
T Consensus       130 ~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~-~lyv~~~--------------~~~~i~~~~~d~~~G~~~~~~~~~~~  194 (297)
T 3g4e_A          130 GALYSLFPDHHVKKYFDQVDISNGLDWSLDHK-IFYYIDS--------------LSYSVDAFDYDLQTGQISNRRSVYKL  194 (297)
T ss_dssp             EEEEEECTTSCEEEEEEEESBEEEEEECTTSC-EEEEEEG--------------GGTEEEEEEECTTTCCEEEEEEEEEC
T ss_pred             cEEEEEECCCCEEEEeeccccccceEEcCCCC-EEEEecC--------------CCCcEEEEeccCCCCcccCcEEEEEC
Confidence            46666643322222221111223333333221 1112111              1222222221  111111 1112233


Q ss_pred             ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEc-cCCCCEEEEEe
Q 011126          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN-PVDDNYFISGS  448 (493)
Q Consensus       385 ~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fs-p~d~~~l~sgs  448 (493)
                      ..+...+..+++.++| ++++....+.|.+||..+++.+..+. +...+++++|. | +++.|...+
T Consensus       195 ~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~-d~~~L~vt~  260 (297)
T 3g4e_A          195 EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGK-NYSEMYVTC  260 (297)
T ss_dssp             CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESG-GGCEEEEEE
T ss_pred             CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCC-CCCEEEEEc
Confidence            3345677899999999 66777778899999999999988887 45789999998 7 666554443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.46  E-value=3.3e-05  Score=72.97  Aligned_cols=181  Identities=7%  Similarity=0.059  Sum_probs=117.1

Q ss_pred             CEEEEEEccCCCEEEEEEC--CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCC
Q 011126          286 SILTMKFSLDGQYLASGGE--DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD  363 (493)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~--Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  363 (493)
                      ....|.|++++.++++.+.  ++.|++.|+.+++.+..+...... ....+...+ ..++.              ..-.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-fgeGi~~~g-~~lyv--------------~t~~~   85 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-FGEGLTLLN-EKLYQ--------------VVWLK   85 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC-CEEEEEEET-TEEEE--------------EETTC
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc-ceEEEEEeC-CEEEE--------------EEecC
Confidence            3689999998755555543  579999999999988887654321 111122211 12222              22244


Q ss_pred             ceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCC------CcEEEEEE
Q 011126          364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN------NYVTSVAF  436 (493)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~------~~V~~v~f  436 (493)
                      ..+.+++...+..    +.++......  .+.++++| .|+.+..+++|.++|..+.+.+..+.-.      ..++.+.|
T Consensus        86 ~~v~viD~~t~~v----~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~  159 (266)
T 2iwa_A           86 NIGFIYDRRTLSN----IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY  159 (266)
T ss_dssp             SEEEEEETTTTEE----EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             CEEEEEECCCCcE----EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence            4566666554433    3333221111  23345566 5555667899999999999988887622      24678888


Q ss_pred             ccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCC--------------CCeEEEEEccCCCEEEEeec
Q 011126          437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR--------------EIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       437 sp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~--------------~~I~sv~~spdG~~l~s~s~  490 (493)
                      .  ++.+++....++.|.+.|..+++++......              ...+.|+|+|+++.+++++.
T Consensus       160 ~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk  225 (266)
T 2iwa_A          160 I--NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK  225 (266)
T ss_dssp             E--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred             E--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence            7  5666666667899999999999988544332              36799999999988877764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.46  E-value=3.2e-05  Score=78.25  Aligned_cols=192  Identities=13%  Similarity=0.122  Sum_probs=117.4

Q ss_pred             ceeccCCCeEEeeecCC--eEEEEECCCccccccccccceeeec-ccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126          241 ATLKPGDHELTLGQRMR--RVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~  317 (493)
                      ++|+|++..|+++..++  .|.+++....... ..+   ..+.. +...+++++++|++..|+.+..++.|+.||..++.
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~-~~~---g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~  251 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP-TRI---GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE  251 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE-EEE---EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCcee-EEe---eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence            88999999888887765  7888876543220 000   01112 44567889999954555557778899999998765


Q ss_pred             eeee----eeccCC-CCc-eEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecC----
Q 011126          318 RLDG----FDVQDT-DPS-CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH----  387 (493)
Q Consensus       318 ~~~~----~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h----  387 (493)
                      ....    ...... .+. .+.+.+.. ..++..+              .....+..++....      +..+.++    
T Consensus       252 ~~~~~~~~~~g~~~~~P~~~ia~~p~~-g~lyv~d--------------~~~~~I~~~~~~g~------~~~~~g~~~~~  310 (409)
T 3hrp_A          252 VTLIKQLELSGSLGTNPGPYLIYYFVD-SNFYMSD--------------QNLSSVYKITPDGE------CEWFCGSATQK  310 (409)
T ss_dssp             EEEEEECCCCSCCCCSSCCEEEEETTT-TEEEEEE--------------TTTTEEEEECTTCC------EEEEEECTTCC
T ss_pred             EEEEecccccCCCCCCccccEEEeCCC-CEEEEEe--------------CCCCEEEEEecCCC------EEEEEeCCCCC
Confidence            3221    111111 111 34444322 2222222              22223333332210      1112221    


Q ss_pred             -----------CCCEeEEEEeCCC-eEEEEe-CCCeEEEEECCCCcEEEEecC---------------CCcEEEEEEccC
Q 011126          388 -----------SSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSH---------------NNYVTSVAFNPV  439 (493)
Q Consensus       388 -----------~~~V~~l~~sp~g-~l~sgs-~Dg~V~lWd~~~~~~~~~~~h---------------~~~V~~v~fsp~  439 (493)
                                 -.....|+++|+| ++++-. .++.|+.|++.++.......+               -.....|+++| 
T Consensus       311 g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~-  389 (409)
T 3hrp_A          311 TVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG-  389 (409)
T ss_dssp             SCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS-
T ss_pred             CcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC-
Confidence                       2457899999999 777777 889999999887776554443               24689999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeC
Q 011126          440 DDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       440 d~~~l~sgs~Dg~V~IWdl  458 (493)
                      ++.++++-..+++|+.+++
T Consensus       390 ~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          390 EGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             SSEEEEEESTTCEEEEEEE
T ss_pred             CCCEEEEECCCCeEEEEEe
Confidence            7888888888899988865

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.43  E-value=6.8e-06  Score=79.36  Aligned_cols=144  Identities=8%  Similarity=0.016  Sum_probs=98.7

Q ss_pred             eecccCCEEEEEEccCCC-EEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeee
Q 011126          280 FLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL  358 (493)
Q Consensus       280 l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (493)
                      +..+........|+|+|+ ++++...++.|..|+. +++. .                                      
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~--------------------------------------   79 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-D--------------------------------------   79 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-E--------------------------------------
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-E--------------------------------------
Confidence            334455677899999998 5667777889999986 3321 1                                      


Q ss_pred             ecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-----CCCcEE
Q 011126          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVT  432 (493)
Q Consensus       359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-----h~~~V~  432 (493)
                                              .+..+...+..++++++| ++++...++.|.+|+.. ++......     ....++
T Consensus        80 ------------------------~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~  134 (305)
T 3dr2_A           80 ------------------------VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN  134 (305)
T ss_dssp             ------------------------EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC
T ss_pred             ------------------------EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC
Confidence                                    111234567889999999 44444456889999986 55433222     124567


Q ss_pred             EEEEccCCCCEEEE----EeC-------------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          433 SVAFNPVDDNYFIS----GSI-------------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       433 ~v~fsp~d~~~l~s----gs~-------------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      .+++.| +++++++    |..             .+.|+.||..++++..+. .....+.++|+|||+.|+++..
T Consensus       135 ~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~  207 (305)
T 3dr2_A          135 DLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQT  207 (305)
T ss_dssp             CEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEEC
T ss_pred             CEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEec
Confidence            899999 9998887    432             356888888777665444 4456789999999998877654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.41  E-value=1.7e-05  Score=79.95  Aligned_cols=182  Identities=14%  Similarity=0.184  Sum_probs=118.9

Q ss_pred             cCCCeEEe-eecCCeEEEEECCCccccccccccceeee------c-ccCCEEEEEEccCCCEEEEEECC------CcEEE
Q 011126          245 PGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFL------A-HEGSILTMKFSLDGQYLASGGED------GTVRV  310 (493)
Q Consensus       245 p~g~~las-gs~dg~V~vwd~~~~~~~~~~~~~~~~l~------~-H~~~I~~l~fspdg~~Lasgs~D------g~V~i  310 (493)
                      +++++|++ |..+++|.|+|+........   ..+++.      . ....-..+...|+| +++++..+      |.|.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~---~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v  168 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPK---IIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILM  168 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCE---EEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCce---eeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEE
Confidence            77777655 66889999999874432221   122221      0 11234567888999 77776555      67889


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      .|..+.+.+..+.....                                                           ...-
T Consensus       169 lD~~T~~v~~~~~~~~~-----------------------------------------------------------~~~~  189 (462)
T 2ece_A          169 LDHYSFEPLGKWEIDRG-----------------------------------------------------------DQYL  189 (462)
T ss_dssp             ECTTTCCEEEECCSBCT-----------------------------------------------------------TCCC
T ss_pred             EECCCCeEEEEEccCCC-----------------------------------------------------------Cccc
Confidence            99888876665542211                                                           0111


Q ss_pred             EeEEEEeCCC-eEEEEe-------------------CCCeEEEEECCCCcEEEEecCC---CcEEEEEE--ccCCCCEEE
Q 011126          391 VLDLSWSKNG-FLLSSS-------------------ADKTVRLWQVGIDRCLRVFSHN---NYVTSVAF--NPVDDNYFI  445 (493)
Q Consensus       391 V~~l~~sp~g-~l~sgs-------------------~Dg~V~lWd~~~~~~~~~~~h~---~~V~~v~f--sp~d~~~l~  445 (493)
                      -.++-|+|++ .+++..                   .+.+|.+||+.+++.+.++...   .....|.|  +| +++++.
T Consensus       190 ~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-dg~~aY  268 (462)
T 2ece_A          190 AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-TKLMGF  268 (462)
T ss_dssp             CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST-TCCEEE
T ss_pred             cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC-CCCEEE
Confidence            2356678877 666653                   4789999999999888888753   34555656  99 888877


Q ss_pred             EEe------CCCeEEEEeCCCCeE-----EEecCC----------------CCCeEEEEEccCCCEEEEeec
Q 011126          446 SGS------IDGKVRIWEVRRCQV-----VDYTDI----------------REIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       446 sgs------~Dg~V~IWdl~~~~~-----~~~~~~----------------~~~I~sv~~spdG~~l~s~s~  490 (493)
                      .++      .+++|.+|....++.     +.....                ...+..|.++|||++|.++..
T Consensus       269 V~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr  340 (462)
T 2ece_A          269 INMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW  340 (462)
T ss_dssp             EEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET
T ss_pred             EEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC
Confidence            766      567898877665532     211110                245789999999999998864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.37  E-value=1e-05  Score=82.06  Aligned_cols=235  Identities=8%  Similarity=0.003  Sum_probs=131.0

Q ss_pred             cCCCeEEeeec-C----CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE----------CCCcEE
Q 011126          245 PGDHELTLGQR-M----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTVR  309 (493)
Q Consensus       245 p~g~~lasgs~-d----g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~V~  309 (493)
                      |+++.+++... +    +.|.+.|..+.+..       .++..-..+  .|.++|||++|+.+.          .++.|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv-------~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs  152 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL-------GMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVE  152 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEE-------EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEE-------EEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence            45565555433 2    79999998755432       233333345  799999999887775          367899


Q ss_pred             EEecCCCeeeeeeecc-------CCCCceEEEeeCC----------CCceeeeeccCccccceeee--------------
Q 011126          310 VWKVIEHERLDGFDVQ-------DTDPSCLYFTINH----------LSQLIPIDVDKEKIDKTKSL--------------  358 (493)
Q Consensus       310 iWdl~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~--------------  358 (493)
                      ++|..+.+.+..+...       ...+..+.+.+++          .+.+..++....++......              
T Consensus       153 viD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~  232 (426)
T 3c75_H          153 VFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVF  232 (426)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             EEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEE
Confidence            9999999988887654       1122233332222          23444444444433222211              


Q ss_pred             -ecCCCceEEEcCCCceeecccceEEEecCCCCE-eEEEEeCCC-eEEEEeCCCeEEEEECCCCcEE--EEec-------
Q 011126          359 -RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV-LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--RVFS-------  426 (493)
Q Consensus       359 -~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~--~~~~-------  426 (493)
                       ..+.++.+.+.+.............+.....++ ..+.+.+++ .++..+..+.|.+.|+......  ..+.       
T Consensus       233 v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i  312 (426)
T 3c75_H          233 YMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAER  312 (426)
T ss_dssp             EEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred             EEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence             111122222221110000000000001111111 134567777 5555567788999998655422  1111       


Q ss_pred             -C---CCcEEEEEEccCCCCEEEEEeC----------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCC-EEEEee
Q 011126          427 -H---NNYVTSVAFNPVDDNYFISGSI----------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-VRQNSA  489 (493)
Q Consensus       427 -h---~~~V~~v~fsp~d~~~l~sgs~----------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~-~l~s~s  489 (493)
                       .   ......++++| +++.+++...          ++.|.+.|+.+.+++...........+.|+|||+ .++++.
T Consensus       313 ~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n  389 (426)
T 3c75_H          313 ADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALS  389 (426)
T ss_dssp             GGTEEECSSSCEEEEG-GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE
T ss_pred             ccccccCCceeeEEcC-CCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEc
Confidence             0   11112368999 7776555432          3579999999999997655556789999999999 777765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.35  E-value=8.3e-05  Score=69.62  Aligned_cols=178  Identities=11%  Similarity=0.143  Sum_probs=116.1

Q ss_pred             EEEEEEccCCCEEEEEECCC--cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCc
Q 011126          287 ILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (493)
Q Consensus       287 I~~l~fspdg~~Lasgs~Dg--~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  364 (493)
                      ...|.|+ ++.++.+.+.+|  .|+++|+.+++.+..+..... ....-+...+ ..++..              .-.+.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g-~~ly~l--------------tw~~~  107 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWK-DKIVGL--------------TWKNG  107 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEET-TEEEEE--------------ESSSS
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeC-CEEEEE--------------EeeCC
Confidence            4788998 677777888776  899999999999888865432 1111111111 112211              22345


Q ss_pred             eEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecC---C---CcEEEEEEc
Q 011126          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH---N---NYVTSVAFN  437 (493)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h---~---~~V~~v~fs  437 (493)
                      .+.+++...+..    +.++..... -..+  ++++ .|+.+..++.|.++|..+.+.+..+.-   .   ..++-+.|.
T Consensus       108 ~v~v~D~~t~~~----~~ti~~~~e-G~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~  180 (262)
T 3nol_A          108 LGFVWNIRNLRQ----VRSFNYDGE-GWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV  180 (262)
T ss_dssp             EEEEEETTTCCE----EEEEECSSC-CCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred             EEEEEECccCcE----EEEEECCCC-ceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence            566666655443    334432221 1233  3455 555555678899999999998888752   2   334567775


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC-------------CCCeEEEEEccCCCEEEEeec
Q 011126          438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-------------REIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       438 p~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~-------------~~~I~sv~~spdG~~l~s~s~  490 (493)
                        ++.+++..-.+..|.+.|..+++++.+...             ....+.|+|+|+++.|.+.+.
T Consensus       181 --~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          181 --DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             --TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             --CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence              677776666788999999999998753322             236799999999988887764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.29  E-value=5.7e-05  Score=78.75  Aligned_cols=234  Identities=11%  Similarity=-0.015  Sum_probs=141.4

Q ss_pred             ccCCCeEEeeec-CCeEEEEECCCccccccccccceeee-cccCCEEEEEE-c-cCCCEEEEEE----------------
Q 011126          244 KPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKF-S-LDGQYLASGG----------------  303 (493)
Q Consensus       244 sp~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~f-s-pdg~~Lasgs----------------  303 (493)
                      .+||+++.+... +++|.+-|+...+.       .+.+. .....+..+++ + |++.+++.++                
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-------~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~  170 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKC-------DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  170 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEE-------EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceE-------eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence            348888777554 66799999875432       22111 12245788888 5 9999998885                


Q ss_pred             --CCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccc-----------cceee--------eecCC
Q 011126          304 --EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI-----------DKTKS--------LRKSS  362 (493)
Q Consensus       304 --~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--------~~~s~  362 (493)
                        .++.+.+.|..+.+....+.... .+..+.+.+++.. ++....+....           .....        .....
T Consensus       171 ~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~-~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G  248 (595)
T 1fwx_A          171 ANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKW-AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  248 (595)
T ss_dssp             GGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSE-EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             cccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCE-EEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence              34679999999999888887755 3445555444322 11111111100           00000        00000


Q ss_pred             C----ceEEEcCCCceeecccc-eEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc------------EEE
Q 011126          363 D----LTCVVLPPKVFRLLEKP-LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR------------CLR  423 (493)
Q Consensus       363 ~----~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~------------~~~  423 (493)
                      .    ..+.+++.....  .+. +..+.. .....++.++|+|  .++++..+.+|.++|+.+.+            ...
T Consensus       249 k~~~i~~V~VID~~~~~--~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~  325 (595)
T 1fwx_A          249 DYQELNGVKVVDGRKEA--SSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA  325 (595)
T ss_dssp             CSEEETTEEEEECSGGG--CCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred             CeeEECcEEEEeCcccC--CceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence            0    123333333210  112 222222 2345689999999  55666688999999998653            445


Q ss_pred             EecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC----------CeEEEecCCCCCeE------EEEEccCCCEEEE
Q 011126          424 VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR----------CQVVDYTDIREIVS------AVCYCPDGKVRQN  487 (493)
Q Consensus       424 ~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~----------~~~~~~~~~~~~I~------sv~~spdG~~l~s  487 (493)
                      ...-......++|+| +|...++.-.|+.|.+||+.+          .+++........+-      .+.++|||++|++
T Consensus       326 ~v~vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~  404 (595)
T 1fwx_A          326 EPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC  404 (595)
T ss_dssp             CCBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred             EcCCCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence            556677889999999 886666777899999999987          45664333333321      2245899999998


Q ss_pred             eec
Q 011126          488 SAC  490 (493)
Q Consensus       488 ~s~  490 (493)
                      +..
T Consensus       405 ~Nk  407 (595)
T 1fwx_A          405 LSK  407 (595)
T ss_dssp             EES
T ss_pred             cCC
Confidence            763

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.28  E-value=2.9e-05  Score=76.34  Aligned_cols=105  Identities=13%  Similarity=0.110  Sum_probs=76.2

Q ss_pred             cCCCCEeEEEEeCCC-eEEEEeC-----CCeEEEEECCCCcEEEEecC-------CCcEEEEEEccCCCCEEEEEe---C
Q 011126          386 GHSSEVLDLSWSKNG-FLLSSSA-----DKTVRLWQVGIDRCLRVFSH-------NNYVTSVAFNPVDDNYFISGS---I  449 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g-~l~sgs~-----Dg~V~lWd~~~~~~~~~~~h-------~~~V~~v~fsp~d~~~l~sgs---~  449 (493)
                      +|...+..|++.++| ++++-..     ++.|.+||+.+++.++.+..       ...+..++++|.++.++++-.   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            356689999999999 4444333     57899999999987776642       245789999983344556655   6


Q ss_pred             CCeEEEEeCCCCeEEEecCC------------------------------CCCeEEEEEccCCCEEEEeec
Q 011126          450 DGKVRIWEVRRCQVVDYTDI------------------------------REIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       450 Dg~V~IWdl~~~~~~~~~~~------------------------------~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ++.|.+||+.+++.......                              ...++.|+|+|||+.|+++..
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~  214 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM  214 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC
Confidence            88999999998876653211                              123688999999998887653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.28  E-value=4.6e-05  Score=74.38  Aligned_cols=97  Identities=15%  Similarity=0.110  Sum_probs=67.2

Q ss_pred             CCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecC-----CCcEEEEEEccCCCCEEEEEeC------CCeEEEEe
Q 011126          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSH-----NNYVTSVAFNPVDDNYFISGSI------DGKVRIWE  457 (493)
Q Consensus       389 ~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h-----~~~V~~v~fsp~d~~~l~sgs~------Dg~V~IWd  457 (493)
                      ..+.+++|+|+|.++.++.+ .|.+||..+++.......     ...++.+.++| +++++++...      .+.|..++
T Consensus        90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe
Confidence            45788999999943334444 599999988876544321     24689999999 8987776542      25666666


Q ss_pred             CCCCeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126          458 VRRCQVVDYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       458 l~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                        ++++..+.......+.++|+|||+.++.+.
T Consensus       168 --~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~  197 (326)
T 2ghs_A          168 --KGKVTKLFADISIPNSICFSPDGTTGYFVD  197 (326)
T ss_dssp             --TTEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred             --CCcEEEeeCCCcccCCeEEcCCCCEEEEEE
Confidence              566554433444678999999999776654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.26  E-value=4.1e-05  Score=77.24  Aligned_cols=182  Identities=11%  Similarity=0.134  Sum_probs=112.1

Q ss_pred             ceeccCCCeEEeeecC------CeEEEEECCCccccccccccceeeeccc-CCEEEEEEccCCCEEEEEE----------
Q 011126          241 ATLKPGDHELTLGQRM------RRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGG----------  303 (493)
Q Consensus       241 ~~fsp~g~~lasgs~d------g~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs----------  303 (493)
                      +.+.|+| ++++...+      |.|.+.|..+....- .+..    ..+. .--+.+.|+|+++.+++..          
T Consensus       143 ~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~-~~~~----~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g  216 (462)
T 2ece_A          143 VHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLG-KWEI----DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDG  216 (462)
T ss_dssp             EEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEE-ECCS----BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTC
T ss_pred             eeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEE-EEcc----CCCCccccceEEECCCCCEEEEccCcCccccccc
Confidence            5677898 66665444      789999987544211 1110    1111 2234688899999888874          


Q ss_pred             ---------CCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126          304 ---------EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (493)
Q Consensus       304 ---------~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (493)
                               ...+|.+||+.+++.+.++.....                                               
T Consensus       217 ~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~-----------------------------------------------  249 (462)
T 2ece_A          217 LKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE-----------------------------------------------  249 (462)
T ss_dssp             CCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT-----------------------------------------------
T ss_pred             cchhhhhhccCCEEEEEECCCCcEeeEEecCCC-----------------------------------------------
Confidence                     367899999988776555543210                                               


Q ss_pred             eecccceEEEecCCCCEeEEEE--eCCC-e-EEEEe-----CCCeEEEEECCCCcE--EEEe--cC--------------
Q 011126          375 RLLEKPLHEFQGHSSEVLDLSW--SKNG-F-LLSSS-----ADKTVRLWQVGIDRC--LRVF--SH--------------  427 (493)
Q Consensus       375 ~~~~~~~~~~~~h~~~V~~l~~--sp~g-~-l~sgs-----~Dg~V~lWd~~~~~~--~~~~--~h--------------  427 (493)
                                   ......|.|  +|++ + ++++-     .+++|.+|....+..  ++.+  ..              
T Consensus       250 -------------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f  316 (462)
T 2ece_A          250 -------------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF  316 (462)
T ss_dssp             -------------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred             -------------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence                         011223334  7777 3 33444     566777665543321  1111  00              


Q ss_pred             ---CCcEEEEEEccCCCCEEEEEeC-CCeEEEEeCCC---CeEEEecCCC---------------CCeEEEEEccCCCEE
Q 011126          428 ---NNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRR---CQVVDYTDIR---------------EIVSAVCYCPDGKVR  485 (493)
Q Consensus       428 ---~~~V~~v~fsp~d~~~l~sgs~-Dg~V~IWdl~~---~~~~~~~~~~---------------~~I~sv~~spdG~~l  485 (493)
                         ...+..|.++| |+++|.++.. .+.|.+||+..   .+++......               .....+.++|||++|
T Consensus       317 ~~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L  395 (462)
T 2ece_A          317 KAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV  395 (462)
T ss_dssp             TEECCCCCCEEECT-TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred             ccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence               24578899999 9998887765 68999999863   3444322221               135789999999999


Q ss_pred             EEee
Q 011126          486 QNSA  489 (493)
Q Consensus       486 ~s~s  489 (493)
                      +++.
T Consensus       396 yVaN  399 (462)
T 2ece_A          396 YVTN  399 (462)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9887

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.26  E-value=3.2e-05  Score=83.44  Aligned_cols=79  Identities=13%  Similarity=0.183  Sum_probs=61.1

Q ss_pred             CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCCCCeEEEEEccCCCEEE
Q 011126          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCPDGKVRQ  486 (493)
Q Consensus       409 g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~~~~I~sv~~spdG~~l~  486 (493)
                      +.|..||+.+++.+..+.+..++....+.. .+.+++.++.||.|++||+.+++++..  .......+-+.|.++|+.++
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence            789999999999988887766666666777 788888899999999999999998843  23333334566789997555


Q ss_pred             Ee
Q 011126          487 NS  488 (493)
Q Consensus       487 s~  488 (493)
                      +.
T Consensus       536 ~~  537 (677)
T 1kb0_A          536 SV  537 (677)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.25  E-value=4.1e-05  Score=76.10  Aligned_cols=216  Identities=9%  Similarity=-0.074  Sum_probs=119.0

Q ss_pred             eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE----------CCCcEEEEecCCCeeeeeeecc--
Q 011126          258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTVRVWKVIEHERLDGFDVQ--  325 (493)
Q Consensus       258 ~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~V~iWdl~~~~~~~~~~~~--  325 (493)
                      +|.+.|..+.+..       .++.....+  .+.++|||++|+.+.          .+++|.+||+.+++.+..+..+  
T Consensus        47 ~vsvID~~t~~v~-------~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~  117 (368)
T 1mda_H           47 ENWVSCAGCGVTL-------GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             EEEEEETTTTEEE-------EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred             eEEEEECCCCeEE-------EEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence            8889998754422       233333345  799999999888886          3688999999999999998765  


Q ss_pred             -----CCCCceEEEeeCCCCceeeeecc-Cccccc----e--------------------eeeecCCCceEEEcCCCc--
Q 011126          326 -----DTDPSCLYFTINHLSQLIPIDVD-KEKIDK----T--------------------KSLRKSSDLTCVVLPPKV--  373 (493)
Q Consensus       326 -----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~--------------------~~~~~s~~~~~~~~~~~~--  373 (493)
                           ...+..+.+++++...... +.. ...+..    .                    ..+..+.++.+...+...  
T Consensus       118 ~~~~~g~~P~~ia~SpDGk~lyVa-n~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~  196 (368)
T 1mda_H          118 PRFSVGPRVHIIGNCASSACLLFF-LFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSCEEEE-ECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred             cccccCCCcceEEEcCCCCEEEEE-ccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence                 1345666666655432222 111 110000    0                    001111222222222211  


Q ss_pred             ---eeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCc--EEEEecC--------C---CcEEEEEE
Q 011126          374 ---FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFSH--------N---NYVTSVAF  436 (493)
Q Consensus       374 ---~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~--~~~~~~h--------~---~~V~~v~f  436 (493)
                         ..........+.-...+.   + .+++ .++..+. +.|.+.|+....  .+..+..        .   .....+.|
T Consensus       197 ~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~  271 (368)
T 1mda_H          197 AAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK  271 (368)
T ss_dssp             CCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred             ccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence               000000000000111222   3 4554 4444445 899999986532  3332211        1   11112689


Q ss_pred             ccCCCCEEEEEeC---------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEee
Q 011126          437 NPVDDNYFISGSI---------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       437 sp~d~~~l~sgs~---------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      +| +++.+..+..         ++.+.++|+.+.+++...........|.|+|||+.++++.
T Consensus       272 s~-dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~  332 (368)
T 1mda_H          272 LK-NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             ET-TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEE
T ss_pred             cC-CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEc
Confidence            99 8777665432         2356699999999987655555789999999998655443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.24  E-value=0.0001  Score=69.06  Aligned_cols=178  Identities=10%  Similarity=0.013  Sum_probs=116.2

Q ss_pred             CEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCce
Q 011126          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT  365 (493)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  365 (493)
                      -...|.|+ ++.++.+.+.+|.|+++|+.+++.+..+ ... .....-+...+ ..++..              .-.+..
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g-~~Ly~l--------------tw~~~~  117 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDG-ERLYQL--------------TWTEGL  117 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECS-SCEEEE--------------ESSSCE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeC-CEEEEE--------------EccCCE
Confidence            35788887 4667788888999999999999988777 432 22222122221 122222              223455


Q ss_pred             EEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecC---C---CcEEEEEEcc
Q 011126          366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH---N---NYVTSVAFNP  438 (493)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h---~---~~V~~v~fsp  438 (493)
                      +.+++...++.    +.++... ..-..++  +++ .|+.+..++.|.++|..+.+.+..+.-   .   ..++-+.|. 
T Consensus       118 v~V~D~~Tl~~----~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-  189 (268)
T 3nok_A          118 LFTWSGMPPQR----ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-  189 (268)
T ss_dssp             EEEEETTTTEE----EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             EEEEECCcCcE----EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-
Confidence            66666655443    3333322 1223444  445 666666789999999999999888762   2   245677776 


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeEEEecCC--------------CCCeEEEEEccCCCEEEEeec
Q 011126          439 VDDNYFISGSIDGKVRIWEVRRCQVVDYTDI--------------REIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       439 ~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~--------------~~~I~sv~~spdG~~l~s~s~  490 (493)
                       ++.+++..-.+..|.+.|..+++++.+...              ....+.|+|+|+++.|.+.+.
T Consensus       190 -dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          190 -NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             -TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             -CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence             577666666788999999999998753322              246799999999877776654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.21  E-value=0.00057  Score=63.31  Aligned_cols=180  Identities=11%  Similarity=0.107  Sum_probs=116.8

Q ss_pred             CCEEEEEEccCCCEEEEEECCC--cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCC
Q 011126          285 GSILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS  362 (493)
Q Consensus       285 ~~I~~l~fspdg~~Lasgs~Dg--~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  362 (493)
                      .-...+.|++ +.++.+.+.+|  .|+++|+.+++.+..+....... ..-+...+ ..++..              .-.
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f-geGi~~~~-~~ly~l--------------tw~   83 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF-GAGIVAWR-DRLIQL--------------TWR   83 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC-EEEEEEET-TEEEEE--------------ESS
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc-eeEEEEeC-CEEEEE--------------Eee
Confidence            3477899986 66667777754  89999999999988886654321 11111111 112221              223


Q ss_pred             CceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecC---C---CcEEEEE
Q 011126          363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH---N---NYVTSVA  435 (493)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h---~---~~V~~v~  435 (493)
                      +..+.+++...+..    +.++..... -..|+  +++ .|+.+..++.|.++|..+.+.+..+.-   .   ..++-+.
T Consensus        84 ~~~v~v~D~~tl~~----~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe  156 (243)
T 3mbr_X           84 NHEGFVYDLATLTP----RARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE  156 (243)
T ss_dssp             SSEEEEEETTTTEE----EEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             CCEEEEEECCcCcE----EEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence            45566666655443    334433222 23444  455 555556689999999999998888762   1   3456677


Q ss_pred             EccCCCCEEEEEeCCCeEEEEeCCCCeEEEecC--------------CCCCeEEEEEccCCCEEEEeec
Q 011126          436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD--------------IREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       436 fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~--------------~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      |.  ++.+++..-.+..|.+.|..+++++.+..              .....+.|+|+|+++.|.+.+.
T Consensus       157 ~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          157 WV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             Ee--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            65  57777666678899999999999884322              1246799999999888877764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.19  E-value=5.1e-05  Score=82.10  Aligned_cols=79  Identities=14%  Similarity=0.175  Sum_probs=59.4

Q ss_pred             CCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec-CCCCCeEEEEEccCCCEE
Q 011126          408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT-DIREIVSAVCYCPDGKVR  485 (493)
Q Consensus       408 Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~-~~~~~I~sv~~spdG~~l  485 (493)
                      +++|+.||+.+++.+..+.+...+....+.. .+.+++.|+.||.|+.||.++++++. +. ......+-+.|..+|+..
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence            4789999999999988887555555556666 78899999999999999999999884 32 222223447788999754


Q ss_pred             EE
Q 011126          486 QN  487 (493)
Q Consensus       486 ~s  487 (493)
                      ++
T Consensus       533 v~  534 (689)
T 1yiq_A          533 VT  534 (689)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.13  E-value=0.0014  Score=61.45  Aligned_cols=219  Identities=9%  Similarity=-0.019  Sum_probs=122.1

Q ss_pred             cccceeccCCCeE-EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCCcEEEEecCC
Q 011126          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIE  315 (493)
Q Consensus       238 ~~~~~fsp~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~V~iWdl~~  315 (493)
                      ...+++++++..| ++-...+.|.+++.......  .     .+.........|++++++..|+.+ ...+.|.++++..
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~-----~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g  110 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--T-----IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--E-----EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--E-----EEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence            4458999966544 45556789999998654311  1     111222467899999976655544 4567899999864


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDL  394 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l  394 (493)
                      .............+..+.+.+.. ..++..+...            ....+..+....     .....+ .........|
T Consensus       111 ~~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~------------~~~~I~~~~~dg-----~~~~~~~~~~~~~P~gi  172 (267)
T 1npe_A          111 TQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNR------------DNPKIETSHMDG-----TNRRILAQDNLGLPNGL  172 (267)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTT-TEEEEEECCS------------SSCEEEEEETTS-----CCCEEEECTTCSCEEEE
T ss_pred             CCEEEEEECCCCCccEEEEeeCC-CEEEEEECCC------------CCcEEEEEecCC-----CCcEEEEECCCCCCcEE
Confidence            33221111111222333333221 2222222110            011222221110     111111 1223467899


Q ss_pred             EEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC-
Q 011126          395 SWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE-  471 (493)
Q Consensus       395 ~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~-  471 (493)
                      ++++++  ++++-...+.|.++|+........+........++..  .+.++++....+.|.++|..+++.+....... 
T Consensus       173 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~  250 (267)
T 1npe_A          173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ  250 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC
T ss_pred             EEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc
Confidence            999975  5566667789999999865544444433445667653  34455555566899999999998875433322 


Q ss_pred             -CeEEEEEccCCC
Q 011126          472 -IVSAVCYCPDGK  483 (493)
Q Consensus       472 -~I~sv~~spdG~  483 (493)
                       ....|++.|++.
T Consensus       251 ~~p~gi~~~~~~~  263 (267)
T 1npe_A          251 TRLYGITIALSQC  263 (267)
T ss_dssp             CCCCCEEEECSCC
T ss_pred             cccceeeecCccC
Confidence             477888888875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.06  E-value=0.00095  Score=62.91  Aligned_cols=195  Identities=11%  Similarity=0.048  Sum_probs=120.3

Q ss_pred             cceeccCCCeEEeeec--CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCCcEEEEecCCC
Q 011126          240 SATLKPGDHELTLGQR--MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIEH  316 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~--dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~V~iWdl~~~  316 (493)
                      .+.|+|++.+.++.+.  .+.|.+.|..+.+.... ..    +..+. ....+.+.  +..|+.+ -.++.|.++|..+.
T Consensus        25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~-i~----l~~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~   96 (266)
T 2iwa_A           25 GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENI-HK----MDDSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL   96 (266)
T ss_dssp             EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEE-EE----CCTTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTT
T ss_pred             cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE-Ee----cCCCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCC
Confidence            3889998765555443  68999999986653221 10    11221 22244554  5555544 46789999999999


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-CCCCEeEEE
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLS  395 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~  395 (493)
                      +.+..+...  ......+++++.. ++              ... ....+.++++..+...........+ .-..++.+.
T Consensus        97 ~v~~~i~~g--~~~g~glt~Dg~~-l~--------------vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele  158 (266)
T 2iwa_A           97 SNIKNFTHQ--MKDGWGLATDGKI-LY--------------GSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE  158 (266)
T ss_dssp             EEEEEEECC--SSSCCEEEECSSS-EE--------------EEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             cEEEEEECC--CCCeEEEEECCCE-EE--------------EEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence            998888755  1112223332211 11              112 3456777777655442211111111 112467888


Q ss_pred             EeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCC--------------CcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--------------NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       396 ~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~--------------~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      |. +| +++....++.|.+-|..+++.+..+...              ...+.|+|+|...++++++...++|++.++..
T Consensus       159 ~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          159 YI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            88 67 5555557899999999999999988632              35689999994446778888899999998865


Q ss_pred             C
Q 011126          461 C  461 (493)
Q Consensus       461 ~  461 (493)
                      .
T Consensus       238 ~  238 (266)
T 2iwa_A          238 V  238 (266)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.05  E-value=0.002  Score=61.87  Aligned_cols=222  Identities=12%  Similarity=0.044  Sum_probs=122.5

Q ss_pred             cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC-C-cEEEEecCCCe
Q 011126          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-G-TVRVWKVIEHE  317 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-g-~V~iWdl~~~~  317 (493)
                      .++++++|.++++-...++|..|+.......         +..-......|++.++|+++++.... + .|..++..+++
T Consensus        36 gia~~~~g~lyv~d~~~~~I~~~d~~g~~~~---------~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           36 NLASAPDGTIFVTNHEVGEIVSITPDGNQQI---------HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCCEEE---------EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             eEEECCCCCEEEEeCCCCeEEEECCCCceEE---------EEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence            4889999997777778899999987643211         11123468899999999966655433 2 36666766766


Q ss_pred             eeeeeeccCCCC-ceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce--eec--ccceE--EEecCCCC
Q 011126          318 RLDGFDVQDTDP-SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF--RLL--EKPLH--EFQGHSSE  390 (493)
Q Consensus       318 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~--~~~~~--~~~~h~~~  390 (493)
                      ............ .....  .....++..              ....+.++.++....  .+.  ...+.  ...+.-..
T Consensus       107 ~~~~~~~~~~~~~~g~~~--~~~~~~~v~--------------d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A          107 VETLLTLPDAIFLNGITP--LSDTQYLTA--------------DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             EEEEEECTTCSCEEEEEE--SSSSEEEEE--------------ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             EEEEEeCCCccccCcccc--cCCCcEEEE--------------ECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            433222211100 01110  111111111              112223333332210  000  00000  00011123


Q ss_pred             EeEEEEeCCC--eEEEEeCCCeEEEEECCC-CcE--EEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126          391 VLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRC--LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       391 V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~-~~~--~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                      ...|  +|++  ++++-...+.|..+++.. +..  ...+........+++.+ +++++++....+.|.++|.. +++..
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~~~~  246 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RSTTI  246 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CCEEE
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-CCEEE
Confidence            4556  7776  556666788999999874 321  12222223456789999 89988887778899999986 55432


Q ss_pred             ---ecCCCCCeEEEEEc---cCCCEEEEeec
Q 011126          466 ---YTDIREIVSAVCYC---PDGKVRQNSAC  490 (493)
Q Consensus       466 ---~~~~~~~I~sv~~s---pdG~~l~s~s~  490 (493)
                         .......+++++|.   ||++.|+++..
T Consensus       247 ~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          247 IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EeecccccCCceEEEEecccCCCCEEEEECC
Confidence               22223568999999   89887776654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.00  E-value=0.00054  Score=66.33  Aligned_cols=188  Identities=9%  Similarity=0.022  Sum_probs=110.6

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccce--------------eeecccCCEEEEEEcc-CCCEEEE
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQ--------------EFLAHEGSILTMKFSL-DGQYLAS  301 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~--------------~l~~H~~~I~~l~fsp-dg~~Las  301 (493)
                      ....+++++++.++.++..++.|..|+.......  .+....              ........+..|++.+ +|+ |+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV--DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE--EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE--EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            3445889999998888888999999987643211  100000              0001123578999998 564 555


Q ss_pred             EECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccce
Q 011126          302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (493)
Q Consensus       302 gs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  381 (493)
                      +...+.|..+|..++.. ..+...                                                        
T Consensus        97 ~d~~~~i~~~d~~~g~~-~~~~~~--------------------------------------------------------  119 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHA-TQLATS--------------------------------------------------------  119 (322)
T ss_dssp             EETTTEEEEECTTCEEC-EEEESE--------------------------------------------------------
T ss_pred             EECCCCEEEEeCCCCEE-EEeccc--------------------------------------------------------
Confidence            55555577777654321 111000                                                        


Q ss_pred             EEEe-cCCCCEeEEEEeC-CC-eEEEEe-----------------CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCC
Q 011126          382 HEFQ-GHSSEVLDLSWSK-NG-FLLSSS-----------------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD  441 (493)
Q Consensus       382 ~~~~-~h~~~V~~l~~sp-~g-~l~sgs-----------------~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~  441 (493)
                        .. ........+++.+ +| ++++-.                 .++.|..||..+++...........+.|+|+| ++
T Consensus       120 --~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg  196 (322)
T 2fp8_A          120 --VDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA-DS  196 (322)
T ss_dssp             --ETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECT-TS
T ss_pred             --CCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECC-CC
Confidence              00 0012356678888 77 333322                 13678888887766543333224456799999 88


Q ss_pred             CEEEEE-eCCCeEEEEeCCCC---eEEEecCCCCCeEEEEEccCCCEEEEe
Q 011126          442 NYFISG-SIDGKVRIWEVRRC---QVVDYTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       442 ~~l~sg-s~Dg~V~IWdl~~~---~~~~~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      ++|+.+ ...+.|++|++.+.   ....+..... ...+++.++|++.++.
T Consensus       197 ~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          197 SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEe
Confidence            855544 56789999998752   2222112233 7889999999876654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.92  E-value=0.0016  Score=60.94  Aligned_cols=181  Identities=10%  Similarity=0.109  Sum_probs=109.3

Q ss_pred             ceeccCCCeEEeeecCC--eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEEEEecCCCe
Q 011126          241 ATLKPGDHELTLGQRMR--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHE  317 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~iWdl~~~~  317 (493)
                      +.|+ ++.+..+.+.+|  .|+++|..+.+....       +.- ..........+++..|.... .++.+.+||..+.+
T Consensus        48 L~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~-------~~l-~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           48 FFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ-------IEL-GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE-------EEC-CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred             EEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE-------Eec-CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence            6788 677777777766  899999886653221       111 11222222333455555544 58899999999999


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC-CCEeEEEE
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSW  396 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~  396 (493)
                      .+.++..... ...+.  .+. .               ..+.......+.++++..+...........+.. ..++.+.|
T Consensus       119 ~~~ti~~~~e-G~glt--~dg-~---------------~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~  179 (262)
T 3nol_A          119 QVRSFNYDGE-GWGLT--HND-Q---------------YLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW  179 (262)
T ss_dssp             EEEEEECSSC-CCCEE--ECS-S---------------CEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE
T ss_pred             EEEEEECCCC-ceEEe--cCC-C---------------EEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE
Confidence            9998876532 22222  111 1               111122345677777776554322111111222 34556788


Q ss_pred             eCCC-eEEEEeCCCeEEEEECCCCcEEEEecC-------------CCcEEEEEEccCCCCEEEEEeCC
Q 011126          397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH-------------NNYVTSVAFNPVDDNYFISGSID  450 (493)
Q Consensus       397 sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h-------------~~~V~~v~fsp~d~~~l~sgs~D  450 (493)
                      . +| +++..-.+..|.+.|..+++.+..+..             .+-.+.|+|+|...+++++|-.=
T Consensus       180 ~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W  246 (262)
T 3nol_A          180 V-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW  246 (262)
T ss_dssp             E-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred             E-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence            7 67 555555788999999999999988862             13569999999555566666433

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.87  E-value=0.0046  Score=57.85  Aligned_cols=177  Identities=7%  Similarity=0.014  Sum_probs=104.7

Q ss_pred             CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEEEEecCCCeeeeeeeccC
Q 011126          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHERLDGFDVQD  326 (493)
Q Consensus       248 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~iWdl~~~~~~~~~~~~~  326 (493)
                      .+|+.+.. +.|+.+++.......  ......+......+..++|++++..|+.+. .++.|.++++....... +    
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~--~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-~----   73 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKK--TEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-I----   73 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCG--GGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-E----
T ss_pred             cEEEEEcC-CeEEEEEecCccccc--ccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-E----
Confidence            44555543 478888876543211  000011222234578999999766665544 56788888875432100 0    


Q ss_pred             CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEE
Q 011126          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLS  404 (493)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~s  404 (493)
                                                                               +.........|++.+++  ++++
T Consensus        74 ---------------------------------------------------------~~~~~~~p~~ia~d~~~~~lyv~   96 (267)
T 1npe_A           74 ---------------------------------------------------------IRQDLGSPEGIALDHLGRTIFWT   96 (267)
T ss_dssp             ---------------------------------------------------------ECTTCCCEEEEEEETTTTEEEEE
T ss_pred             ---------------------------------------------------------EECCCCCccEEEEEecCCeEEEE
Confidence                                                                     00112356789999864  5556


Q ss_pred             EeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeC---CCeEEEEeCCCCeEEEe-cCCCCCeEEEEEc
Q 011126          405 SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQVVDY-TDIREIVSAVCYC  479 (493)
Q Consensus       405 gs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~IWdl~~~~~~~~-~~~~~~I~sv~~s  479 (493)
                      -...+.|.++++.......... .......++++| ++..|..+..   .+.|..+++.......+ .........++++
T Consensus        97 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d  175 (267)
T 1npe_A           97 DSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFD  175 (267)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEE
T ss_pred             ECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEc
Confidence            6667899999987544333333 225678999999 6555544443   47899998875432222 1223468999999


Q ss_pred             cCCCEEEEeec
Q 011126          480 PDGKVRQNSAC  490 (493)
Q Consensus       480 pdG~~l~s~s~  490 (493)
                      |++..|.++..
T Consensus       176 ~~~~~lyv~d~  186 (267)
T 1npe_A          176 AFSSQLCWVDA  186 (267)
T ss_dssp             TTTTEEEEEET
T ss_pred             CCCCEEEEEEC
Confidence            99887766543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.84  E-value=0.0028  Score=59.31  Aligned_cols=195  Identities=12%  Similarity=0.130  Sum_probs=120.0

Q ss_pred             eeecccccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126          233 RIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW  311 (493)
                      +..+....+++.|++. ++++...++.|...|... . ....+    .+.+ ....-.|++.+++.++++.-.++.+.++
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-~-v~~~i----~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-D-LIRTI----PLDF-VKDLETIEYIGDNQFVISDERDYAIYVI   96 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-C-EEEEE----ECSS-CSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-C-EEEEE----ecCC-CCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence            3334556699999766 445577788888888762 2 12211    1122 2567788998988877776567788888


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      ++.....+.......                                          +          ++. ...+....
T Consensus        97 ~v~~~~~i~~~~~~~------------------------------------------~----------~~~-~~~~N~g~  123 (255)
T 3qqz_A           97 SLTPNSEVKILKKIK------------------------------------------I----------PLQ-ESPTNCGF  123 (255)
T ss_dssp             EECTTCCEEEEEEEE------------------------------------------C----------CCS-SCCCSSCC
T ss_pred             EcCCCCeeeeeeeec------------------------------------------c----------ccc-cccccCCc
Confidence            876543211110000                                          0          000 01134557


Q ss_pred             eEEEEeCCC-eEEEEeCCCeEEEEECC---CCcEEEEec--------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          392 LDLSWSKNG-FLLSSSADKTVRLWQVG---IDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       392 ~~l~~sp~g-~l~sgs~Dg~V~lWd~~---~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      ..|+|.|.+ .|+++.......||.+.   ....+..+.        +...+..++++|..+.+++.......|.++|..
T Consensus       124 EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~  203 (255)
T 3qqz_A          124 EGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV  203 (255)
T ss_dssp             EEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC
Confidence            899999987 66556555445555543   111222221        334578999999888888888888999999987


Q ss_pred             CCeEEE---ec-CC------CCCeEEEEEccCCCEEEEe
Q 011126          460 RCQVVD---YT-DI------REIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       460 ~~~~~~---~~-~~------~~~I~sv~~spdG~~l~s~  488 (493)
                      .. ++.   +. +.      -.....|+|.|+|+..+++
T Consensus       204 g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          204 GE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             CC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred             CC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence            54 443   22 11      1367899999999977664

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.80  E-value=0.0012  Score=63.54  Aligned_cols=204  Identities=14%  Similarity=0.065  Sum_probs=121.3

Q ss_pred             CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccC
Q 011126          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD  326 (493)
Q Consensus       247 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~  326 (493)
                      +..+.+++.++.|..++.. .... .      .+..+...+.++...+++. |+.++.++.|..+|.. ++....+....
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~-~------~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~  176 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEK-W------RFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTND  176 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEE-E------EEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEE-E------EEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCC
Confidence            4567778888999999876 3211 1      1222334456667777776 5567788999999988 77665555433


Q ss_pred             CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEe
Q 011126          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS  406 (493)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs  406 (493)
                      .....+..  .....++.               ++  ..+..++..     .+.+..+......+.++...++|.|..++
T Consensus       177 ~~~~~~~~--d~~g~l~v---------------~t--~~l~~~d~~-----g~~~~~~~~~~~~~~~~~~~~~g~l~v~t  232 (330)
T 3hxj_A          177 AITSAASI--GKDGTIYF---------------GS--DKVYAINPD-----GTEKWNFYAGYWTVTRPAISEDGTIYVTS  232 (330)
T ss_dssp             CCCSCCEE--CTTCCEEE---------------ES--SSEEEECTT-----SCEEEEECCSSCCCSCCEECTTSCEEEEE
T ss_pred             CceeeeEE--cCCCEEEE---------------Ee--CEEEEECCC-----CcEEEEEccCCcceeceEECCCCeEEEEc
Confidence            22222211  11111111               11  333333321     11223333444668888888888777788


Q ss_pred             CCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCE
Q 011126          407 ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKV  484 (493)
Q Consensus       407 ~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~  484 (493)
                      .++.|..+|. ++..+..+. ....+..+.+.+ ++ .|..++.+|.|..+|. +++.+ ........+.++...++|++
T Consensus       233 ~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l  308 (330)
T 3hxj_A          233 LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI  308 (330)
T ss_dssp             TTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE
T ss_pred             CCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE
Confidence            8888988874 555555554 333344455654 44 5667788889999996 56655 33334556777888889987


Q ss_pred             EEEe
Q 011126          485 RQNS  488 (493)
Q Consensus       485 l~s~  488 (493)
                      .+.+
T Consensus       309 ~~gt  312 (330)
T 3hxj_A          309 YFGT  312 (330)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            6644

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.75  E-value=4e-06  Score=83.67  Aligned_cols=140  Identities=11%  Similarity=0.058  Sum_probs=71.1

Q ss_pred             CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCce
Q 011126          295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (493)
Q Consensus       295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  374 (493)
                      ++..|++++.||.|+.||..+++.+..+..  .......+..+                ....+..+.++.++.++....
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~----------------g~~~v~~s~dg~l~a~d~~tG   69 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVE----------------EPAFLPDPNDGSLYTLGSKNN   69 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC---------------------CCEEECTTTCCEEEC-----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcC----------------CCEEEEeCCCCEEEEEECCCC
Confidence            577899999999999999999998877765  11111110000                011223345666777765322


Q ss_pred             eecccceEEEecC------CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEe
Q 011126          375 RLLEKPLHEFQGH------SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS  448 (493)
Q Consensus       375 ~~~~~~~~~~~~h------~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs  448 (493)
                      +.    +..+..+      ..++    +..++.+++++.|+.|+.||..+++.+..+....   .+.++| ++..+++++
T Consensus        70 ~~----~w~~~~~~~~~~~~sp~----~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p-~~~~v~~~~  137 (369)
T 2hz6_A           70 EG----LTKLPFTIPELVQASPC----RSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSP-STSLLYLGR  137 (369)
T ss_dssp             CC----SEECSCCHHHHHTTCSC----C-----CCCCEEEEEEEEECCC--------------------------EEEEE
T ss_pred             ce----eeeeeccCccccccCce----EecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccc-cCCEEEEEe
Confidence            21    1111111      1111    1123477788889999999999999987776433   245678 788999999


Q ss_pred             CCCeEEEEeCCCCeEE
Q 011126          449 IDGKVRIWEVRRCQVV  464 (493)
Q Consensus       449 ~Dg~V~IWdl~~~~~~  464 (493)
                      .|+.|+.||..+++++
T Consensus       138 ~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A          138 TEYTITMYDTKTRELR  153 (369)
T ss_dssp             EEEEEECCCSSSSSCC
T ss_pred             cCCEEEEEECCCCCEE
Confidence            9999999999998765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.75  E-value=0.0049  Score=57.66  Aligned_cols=183  Identities=11%  Similarity=0.092  Sum_probs=111.1

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  320 (493)
                      +.|+ ++.+..+.+.+|.|+++|+.+.+.....      +.. .-.--.+.+.. +++.+..-.++.+.+||..+.+.+.
T Consensus        60 L~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~------l~~-~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           60 LVFH-QGHFFESTGHQGTLRQLSLESAQPVWME------RLG-NIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             EEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE------ECT-TCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             EEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE------CCC-CcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence            5666 4567777778899999998866532221      111 11112344432 2333444568899999999999999


Q ss_pred             eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-CCCCEeEEEEeCC
Q 011126          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKN  399 (493)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~  399 (493)
                      ++..... ...+.  .+.               .. .+.......+.++++..++..........+ .-..++.|.|. +
T Consensus       131 ti~~~~e-GwGLt--~Dg---------------~~-L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d  190 (268)
T 3nok_A          131 TTRYSGE-GWGLC--YWN---------------GK-LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N  190 (268)
T ss_dssp             EEECSSC-CCCEE--EET---------------TE-EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             EEeCCCc-eeEEe--cCC---------------CE-EEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence            8876432 22222  111               11 111223567777777766543221111111 12245678887 6


Q ss_pred             C-eEEEEeCCCeEEEEECCCCcEEEEecCC--------------CcEEEEEEccCCCCEEEEEeCCCe
Q 011126          400 G-FLLSSSADKTVRLWQVGIDRCLRVFSHN--------------NYVTSVAFNPVDDNYFISGSIDGK  452 (493)
Q Consensus       400 g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~--------------~~V~~v~fsp~d~~~l~sgs~Dg~  452 (493)
                      | +++..-.+..|.+-|..+++.+..+...              +-.+.|+++|...++|+||-.=-+
T Consensus       191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~  258 (268)
T 3nok_A          191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPR  258 (268)
T ss_dssp             TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSE
T ss_pred             CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCc
Confidence            6 5555557889999999999999888521              367999999966778888754433

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.65  E-value=0.0066  Score=65.04  Aligned_cols=97  Identities=16%  Similarity=0.194  Sum_probs=62.8

Q ss_pred             EEEEeC-CC-eEEEEeCCC-----------eEEEEECCCCcEEEEe--c--CCCcEEEEEEccCCCCEEEEEeCC-----
Q 011126          393 DLSWSK-NG-FLLSSSADK-----------TVRLWQVGIDRCLRVF--S--HNNYVTSVAFNPVDDNYFISGSID-----  450 (493)
Q Consensus       393 ~l~~sp-~g-~l~sgs~Dg-----------~V~lWd~~~~~~~~~~--~--h~~~V~~v~fsp~d~~~l~sgs~D-----  450 (493)
                      ++.|.. ++ +++.|+.++           .|.+||..+.......  .  ....-.++...| ++++++.|+.+     
T Consensus       403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~  481 (656)
T 1k3i_A          403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPF  481 (656)
T ss_dssp             EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTT
T ss_pred             eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC-CCCEEEECCcccCcCc
Confidence            344443 45 666776432           6888898877665543  1  222223456678 89999999865     


Q ss_pred             ------CeEEEEeCCCCeEEEecC---CCCCeEEEEEccCCCEEEEeec
Q 011126          451 ------GKVRIWEVRRCQVVDYTD---IREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       451 ------g~V~IWdl~~~~~~~~~~---~~~~I~sv~~spdG~~l~s~s~  490 (493)
                            ..+.+||..+.+......   .........+.|||++++.|+.
T Consensus       482 ~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          482 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                  468999998887654322   2223345567899999998874

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.56  E-value=0.0018  Score=68.50  Aligned_cols=80  Identities=9%  Similarity=0.079  Sum_probs=55.2

Q ss_pred             CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeE--EEEEccCCCE
Q 011126          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS--AVCYCPDGKV  484 (493)
Q Consensus       407 ~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~--sv~~spdG~~  484 (493)
                      .++.|.-||+.+++.+-.+.+..++..-.... .+.+++.|+.||.|+.||.++++++........+.  -+.|..+|+.
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CcceEEEEECCCCCEEEEecCCCCCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            36889999999999887776433332222222 46778889999999999999999885333333332  3677789974


Q ss_pred             EEE
Q 011126          485 RQN  487 (493)
Q Consensus       485 l~s  487 (493)
                      .++
T Consensus       543 Yv~  545 (582)
T 1flg_A          543 YLG  545 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.54  E-value=0.0021  Score=70.08  Aligned_cols=180  Identities=9%  Similarity=0.007  Sum_probs=95.8

Q ss_pred             ccceec-cCCCeEEeeec-----CCeEEEEECCCc-cccccccccceeeecccCCEEEEEEccCCCEEEEEECCC-----
Q 011126          239 GSATLK-PGDHELTLGQR-----MRRVRVHPVKKQ-SRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-----  306 (493)
Q Consensus       239 ~~~~fs-p~g~~lasgs~-----dg~V~vwd~~~~-~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-----  306 (493)
                      ...+|+ |||++||.+..     ..+|+++++.+. .. +..     .+..   ....+.|+|||+.|+....|.     
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~-----~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IAD-----KVSG---TNGEIVWGPDHTSLFYVTKDETLREN  247 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCC-----CEEE---ECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCc-----cccC---ceeeEEEecCCCEEEEEEECCCCCCC
Confidence            347899 99999886443     235999999866 31 110     1111   134678999999887776652     


Q ss_pred             cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe-
Q 011126          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-  385 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-  385 (493)
                      .|+++++.++...                                             .               ...+. 
T Consensus       248 ~v~~~~lgt~~~~---------------------------------------------~---------------~lv~~~  267 (751)
T 2xe4_A          248 KVWRHVMGKLQSE---------------------------------------------D---------------VCLYEE  267 (751)
T ss_dssp             EEEEEETTSCGGG---------------------------------------------C---------------EEEEEC
T ss_pred             EEEEEECCCCchh---------------------------------------------c---------------EEEEec
Confidence            3444444332100                                             0               00011 


Q ss_pred             cCCCCEeEEEEeCCC-eEEEEe---CCCeEEEEECCCC--cE-EEEe-c-CCCcEEEEEEccCCCCEEEEEeCC----Ce
Q 011126          386 GHSSEVLDLSWSKNG-FLLSSS---ADKTVRLWQVGID--RC-LRVF-S-HNNYVTSVAFNPVDDNYFISGSID----GK  452 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g-~l~sgs---~Dg~V~lWd~~~~--~~-~~~~-~-h~~~V~~v~fsp~d~~~l~sgs~D----g~  452 (493)
                      .+......+.|+|+| +|+..+   ....|.++|+.++  .. +..+ . .......+.|+. ++.+++....+    ..
T Consensus       268 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~  346 (751)
T 2xe4_A          268 HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHK  346 (751)
T ss_dssp             CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCE
T ss_pred             CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcE
Confidence            122335678999999 554433   2346888898875  22 1333 2 345556666654 44444444443    36


Q ss_pred             EEEEeCCC-CeEEE-ecCCCCCeEEEEEccCCCEEEEe
Q 011126          453 VRIWEVRR-CQVVD-YTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       453 V~IWdl~~-~~~~~-~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      |.++++.+ ++... +..+...+.--.+.+++..|+..
T Consensus       347 L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~  384 (751)
T 2xe4_A          347 LLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVA  384 (751)
T ss_dssp             EEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEE
T ss_pred             EEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEE
Confidence            77888765 23222 23333322222344445555544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.54  E-value=0.015  Score=53.70  Aligned_cols=183  Identities=13%  Similarity=0.063  Sum_probs=107.8

Q ss_pred             ceeccCCCeEEeeecC--CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCCcEEEEecCCCe
Q 011126          241 ATLKPGDHELTLGQRM--RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       241 ~~fsp~g~~lasgs~d--g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~V~iWdl~~~~  317 (493)
                      +.|+. +.+..+.+.+  ..|+++|..+.+.....     .+..+. .--.+.+  .+..|. ..-.++.+.+||..+.+
T Consensus        26 L~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-----~l~~~~-fgeGi~~--~~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           26 LFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-----EVPPPY-FGAGIVA--WRDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             EEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-----ECCTTC-CEEEEEE--ETTEEEEEESSSSEEEEEETTTTE
T ss_pred             EEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-----eCCCCc-ceeEEEE--eCCEEEEEEeeCCEEEEEECCcCc
Confidence            67776 5555665555  48999999866532211     111111 1122333  344444 44568899999999999


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEec-CCCCEeEEEE
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSW  396 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~  396 (493)
                      .+.++..... ...+.  .+. .              ....+ ..+..+.++++..+...........+ .-..++.|.|
T Consensus        97 ~~~ti~~~~~-Gwglt--~dg-~--------------~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~  157 (243)
T 3mbr_X           97 PRARFRYPGE-GWALT--SDD-S--------------HLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW  157 (243)
T ss_dssp             EEEEEECSSC-CCEEE--ECS-S--------------CEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             EEEEEeCCCC-ceEEe--eCC-C--------------EEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence            9998886532 22222  211 1              11112 23556777887766543221111111 1134567777


Q ss_pred             eCCC-eEEEEeCCCeEEEEECCCCcEEEEecC--------------CCcEEEEEEccCCCCEEEEEeCCCe
Q 011126          397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH--------------NNYVTSVAFNPVDDNYFISGSIDGK  452 (493)
Q Consensus       397 sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h--------------~~~V~~v~fsp~d~~~l~sgs~Dg~  452 (493)
                      . +| +++..-.+..|.+.|..+++.+..+..              .+-.+.|+++|...++++||-.=.+
T Consensus       158 ~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~  227 (243)
T 3mbr_X          158 V-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPM  227 (243)
T ss_dssp             E-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSE
T ss_pred             e-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence            6 56 555555788999999999999988751              1356899999966667777754443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.47  E-value=0.0051  Score=58.97  Aligned_cols=164  Identities=14%  Similarity=0.029  Sum_probs=94.5

Q ss_pred             CCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee
Q 011126          296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR  375 (493)
Q Consensus       296 g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  375 (493)
                      +..|..++.++.|..+|.. ++.................  .....               .+.++.++.+..++.. . 
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~~g~---------------l~vgt~~~~l~~~d~~-g-  166 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SEDGT---------------IYVGSNDNYLYAINPD-G-  166 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CTTSC---------------EEEECTTSEEEEECTT-S-
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cCCCE---------------EEEEcCCCEEEEECCC-C-
Confidence            4567778889999999987 6665555433222111111  10111               1122333445555543 1 


Q ss_pred             ecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126          376 LLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (493)
Q Consensus       376 ~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (493)
                         +.+..+..+...+.++...+++.|..++  +.|..+| .+++.+..+. ....+.++...+ ++. |..++.++.|.
T Consensus       167 ---~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~~gl~  238 (330)
T 3hxj_A          167 ---TEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DGT-IYVTSLDGHLY  238 (330)
T ss_dssp             ---CEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TSC-EEEEETTTEEE
T ss_pred             ---CEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CCe-EEEEcCCCeEE
Confidence               1223333445567777787778555555  8899999 6776666554 446688888887 665 45566788898


Q ss_pred             EEeCCCCeEEEecCCCCCeEEEEEccCCCEEEE
Q 011126          455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQN  487 (493)
Q Consensus       455 IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s  487 (493)
                      .+|.....+.........+.++.+.++|.+.+.
T Consensus       239 ~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~  271 (330)
T 3hxj_A          239 AINPDGTEKWRFKTGKRIESSPVIGNTDTIYFG  271 (330)
T ss_dssp             EECTTSCEEEEEECSSCCCSCCEECTTSCEEEE
T ss_pred             EECCCCCEeEEeeCCCCccccceEcCCCeEEEe
Confidence            888544443344333333445666667765544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.45  E-value=0.0088  Score=64.35  Aligned_cols=90  Identities=10%  Similarity=0.114  Sum_probs=65.3

Q ss_pred             eEEEEeCCCeEEEEECCCCcEEEEecCC--C----------cE------------------------EEEEEccCCCCEE
Q 011126          401 FLLSSSADKTVRLWQVGIDRCLRVFSHN--N----------YV------------------------TSVAFNPVDDNYF  444 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~h~--~----------~V------------------------~~v~fsp~d~~~l  444 (493)
                      .++.++.+|.|+++|..+++.+..+...  .          ++                        ..++|+| +..++
T Consensus       329 ~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~  407 (677)
T 1kb0_A          329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLV  407 (677)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEE
T ss_pred             EEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEE
Confidence            6888999999999999999988766411  1          11                        1468889 77777


Q ss_pred             EEEeC-------------------------------------------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccC
Q 011126          445 ISGSI-------------------------------------------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD  481 (493)
Q Consensus       445 ~sgs~-------------------------------------------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spd  481 (493)
                      ++...                                           .|.|..||+.+++++....+..++....+..+
T Consensus       408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~  487 (677)
T 1kb0_A          408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTA  487 (677)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET
T ss_pred             EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeC
Confidence            76543                                           27899999999998865555555566667777


Q ss_pred             CCEEEEeecC
Q 011126          482 GKVRQNSACN  491 (493)
Q Consensus       482 G~~l~s~s~d  491 (493)
                      |..+++++.+
T Consensus       488 g~~v~~g~~d  497 (677)
T 1kb0_A          488 GNVVFQGTAD  497 (677)
T ss_dssp             TTEEEEECTT
T ss_pred             CCEEEEECCC
Confidence            7777776544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.42  E-value=0.015  Score=57.11  Aligned_cols=194  Identities=9%  Similarity=0.037  Sum_probs=103.7

Q ss_pred             CCeEEeeecCCeEEEEECCCccccccccccce--eeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeec
Q 011126          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQ--EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV  324 (493)
Q Consensus       247 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~--~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~  324 (493)
                      +..+++++.++.|..+|..+....-.......  .+..+..+    ..  .+..++.+..++.|..+|..+++.+.....
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~----~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~  216 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAP----TT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRI  216 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCC----EE--ETTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCc----EE--ECCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence            44677788899999999865542211000000  00111111    11  144677888899999999999988776654


Q ss_pred             cCCCCce-E-EEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeE
Q 011126          325 QDTDPSC-L-YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL  402 (493)
Q Consensus       325 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l  402 (493)
                      ....... + .+.......+.         ..-..+....++.+..++.....    .+....  ......+... ++.+
T Consensus       217 ~~~~~~~~~~~~~~~~~~p~~---------~~~~v~~~~~~g~l~~~d~~tG~----~~w~~~--~~~~~~~~~~-~~~l  280 (376)
T 3q7m_A          217 SQATGSTEIDRLSDVDTTPVV---------VNGVVFALAYNGNLTALDLRSGQ----IMWKRE--LGSVNDFIVD-GNRI  280 (376)
T ss_dssp             CC-----------CCCCCCEE---------ETTEEEEECTTSCEEEEETTTCC----EEEEEC--CCCEEEEEEE-TTEE
T ss_pred             ccCCCCcccccccccCCCcEE---------ECCEEEEEecCcEEEEEECCCCc----EEeecc--CCCCCCceEE-CCEE
Confidence            3211000 0 00000000000         00111122223344444433211    111111  1223344443 3477


Q ss_pred             EEEeCCCeEEEEECCCCcEEEEec-C-CCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126          403 LSSSADKTVRLWQVGIDRCLRVFS-H-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       403 ~sgs~Dg~V~lWd~~~~~~~~~~~-h-~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                      +.++.++.|..+|..+++.+.... . ...+.....   .+..|+.++.+|.|+++|..+++++.
T Consensus       281 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~---~~~~l~v~~~~g~l~~~d~~tG~~~~  342 (376)
T 3q7m_A          281 YLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL---YNGNLVVGDSEGYLHWINVEDGRFVA  342 (376)
T ss_dssp             EEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE---ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence            888889999999999999877664 1 222333333   34678888999999999999999874

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.42  E-value=0.11  Score=56.57  Aligned_cols=227  Identities=10%  Similarity=0.003  Sum_probs=128.4

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~  317 (493)
                      +.++...+++.+.+ |+..+-+.+|+..................-....|.+|...++|.+.+ |..+ -|.+|+..++.
T Consensus       217 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~  293 (795)
T 4a2l_A          217 IQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDS  293 (795)
T ss_dssp             EEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTE
T ss_pred             eEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCe
Confidence            44455666666554 444444788887643211100000000001245799999998887554 5555 48899987765


Q ss_pred             eeeeeeccCC-----CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe-------
Q 011126          318 RLDGFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-------  385 (493)
Q Consensus       318 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-------  385 (493)
                      ..........     ......+..+....+..               ++..+.+..++....     ....+.       
T Consensus       294 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi---------------gt~~~Gl~~~~~~~~-----~~~~~~~~~~~~~  353 (795)
T 4a2l_A          294 FASYSSNPVENGSLSQRSVRSIFMDSQGGMWL---------------GTYFGGLNYYHPIRN-----RFKNIRNIPYKNS  353 (795)
T ss_dssp             EEEECCCTTSTTSCSSSCEEEEEECTTSCEEE---------------EESSSCEEEECGGGG-----SSEEECCCTTSSS
T ss_pred             EEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE---------------EECCCCeEEeCCCcc-----cceEEcCCCCCCC
Confidence            4322111100     01111122222222211               111122222222110     011111       


Q ss_pred             cCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec---------CCCcEEEEEEccCCCCEEEEEeCCCeEEEE
Q 011126          386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~---------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IW  456 (493)
                      .....|.++...++|.|..|+.++-|..|+..++.......         ....|.++...+ ++++|..|+.++-|.+|
T Consensus       354 l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~  432 (795)
T 4a2l_A          354 LSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSIL  432 (795)
T ss_dssp             CSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred             CCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEE
Confidence            12456999999888877778888889999988776544321         136799999988 78856667777779999


Q ss_pred             eCCCCeEEEecC-----CCCCeEEEEEccCCCEEEEe
Q 011126          457 EVRRCQVVDYTD-----IREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       457 dl~~~~~~~~~~-----~~~~I~sv~~spdG~~l~s~  488 (493)
                      |..+++...+..     ....|.++...++|.+.+..
T Consensus       433 d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt  469 (795)
T 4a2l_A          433 HRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT  469 (795)
T ss_dssp             ETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred             eCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence            999888765542     34579999999999876654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.40  E-value=0.034  Score=54.56  Aligned_cols=196  Identities=11%  Similarity=-0.003  Sum_probs=104.9

Q ss_pred             CCCeEEeeecCCeEEEEECCCccccccccccceeee-cc--cCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeee
Q 011126          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AH--EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF  322 (493)
Q Consensus       246 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H--~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~  322 (493)
                      .+..+.+++.++.|..+|..+.+..-. ........ .+  ...+... ...++..|+.++.++.|..+|..+++.+...
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWS-VSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEE-EECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeee-ecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            456777778889999999875543211 10000000 00  1223222 1224567888899999999999999987766


Q ss_pred             eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC-----EeEEEEe
Q 011126          323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE-----VLDLSWS  397 (493)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----V~~l~~s  397 (493)
                      .............                  .-..+....++.+..++......    +..+......     .......
T Consensus       130 ~~~~~~~~~p~~~------------------~~~v~v~~~~g~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~~  187 (376)
T 3q7m_A          130 KVAGEALSRPVVS------------------DGLVLIHTSNGQLQALNEADGAV----KWTVNLDMPSLSLRGESAPTTA  187 (376)
T ss_dssp             ECSSCCCSCCEEE------------------TTEEEEECTTSEEEEEETTTCCE----EEEEECCC-----CCCCCCEEE
T ss_pred             eCCCceEcCCEEE------------------CCEEEEEcCCCeEEEEECCCCcE----EEEEeCCCCceeecCCCCcEEE
Confidence            5543211110000                  00112223334444444322111    1111111100     0111122


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcE-----E---EEEEcc-CCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 011126          398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYV-----T---SVAFNP-VDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (493)
Q Consensus       398 p~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V-----~---~v~fsp-~d~~~l~sgs~Dg~V~IWdl~~~~~~~~  466 (493)
                       ++.++.+..++.|..+|..+++.+..+....+.     .   .+.-.| ..+..++.++.++.|..+|..+++++..
T Consensus       188 -~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~  264 (376)
T 3q7m_A          188 -FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWK  264 (376)
T ss_dssp             -TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEE
T ss_pred             -CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEee
Confidence             457778888999999999999988776532210     0   011111 1346777888899999999999988743

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.40  E-value=0.0035  Score=67.36  Aligned_cols=78  Identities=6%  Similarity=0.135  Sum_probs=55.5

Q ss_pred             CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCe--EEEEEccCCCE
Q 011126          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV--SAVCYCPDGKV  484 (493)
Q Consensus       407 ~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I--~sv~~spdG~~  484 (493)
                      .++.|..||+.+++.+..+.+...+....+.. .+.+++.++.||.|+.||.++++++........+  .-+.|..+|+.
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~  514 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccceEEEEeCCCCcEEEEccCCCCCcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence            45889999999999988776555554444555 6788899999999999999999988432222211  23455677874


Q ss_pred             E
Q 011126          485 R  485 (493)
Q Consensus       485 l  485 (493)
                      .
T Consensus       515 y  515 (668)
T 1kv9_A          515 Y  515 (668)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.35  E-value=0.0066  Score=63.94  Aligned_cols=82  Identities=10%  Similarity=0.035  Sum_probs=56.3

Q ss_pred             CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCe--EEEEEccCCCE
Q 011126          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV--SAVCYCPDGKV  484 (493)
Q Consensus       407 ~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I--~sv~~spdG~~  484 (493)
                      .++.|..||+.+++.+..+.+...+....+.. .+.+++.++.||.|+.||.++++++........+  ..+.|..+|+.
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~  520 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCCeEEEEECCCCCEEEEecCCCCccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence            45889999999999888876544444333333 4677777999999999999999988432222222  22446788876


Q ss_pred             EEEee
Q 011126          485 RQNSA  489 (493)
Q Consensus       485 l~s~s  489 (493)
                      ++...
T Consensus       521 yv~~~  525 (571)
T 2ad6_A          521 YIGSM  525 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.30  E-value=0.024  Score=54.49  Aligned_cols=94  Identities=15%  Similarity=0.132  Sum_probs=59.9

Q ss_pred             EeEEEEeCCC-eEE-EEeCCCeEEEEECCCCc--EEEEe-cCCCcEEEEEEccCCCCEEEEEeC----------CCeEEE
Q 011126          391 VLDLSWSKNG-FLL-SSSADKTVRLWQVGIDR--CLRVF-SHNNYVTSVAFNPVDDNYFISGSI----------DGKVRI  455 (493)
Q Consensus       391 V~~l~~sp~g-~l~-sgs~Dg~V~lWd~~~~~--~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~----------Dg~V~I  455 (493)
                      ...|+|+|++ .|+ +-...+.|.+|++....  ....+ .... ...+++.+ +++++++...          .+.|..
T Consensus       187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~  264 (322)
T 2fp8_A          187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIK  264 (322)
T ss_dssp             CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEE
T ss_pred             CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCCCccEEEE
Confidence            4579999998 454 44667899999987521  11222 2223 78899999 8888777654          467889


Q ss_pred             EeCCCCeEEE-ecCC----CCCeEEEEEccCCCEEEEe
Q 011126          456 WEVRRCQVVD-YTDI----REIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       456 Wdl~~~~~~~-~~~~----~~~I~sv~~spdG~~l~s~  488 (493)
                      +|.. ++++. +...    ...++.+++ .+|+++++.
T Consensus       265 ~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~  300 (322)
T 2fp8_A          265 FDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGT  300 (322)
T ss_dssp             ECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEEC
T ss_pred             ECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEee
Confidence            9875 55543 3222    235677776 466555543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.29  E-value=0.13  Score=56.18  Aligned_cols=224  Identities=8%  Similarity=0.046  Sum_probs=128.8

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccc--eeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~--~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~  314 (493)
                      .+.++...++|.+.+ |+.. -|.+|+......  ......  ....-....|.+|...++|. |..|+.++-|..|+..
T Consensus       264 ~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~  338 (795)
T 4a2l_A          264 YIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSF--ASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI  338 (795)
T ss_dssp             BEEEEEECTTSCEEE-EESS-CEEEEETTTTEE--EEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred             eEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeE--EEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence            355566777776544 4444 478888654331  111000  00011345799999999887 4457777779999876


Q ss_pred             CCeeeeeeeccCC-----CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe----
Q 011126          315 EHERLDGFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ----  385 (493)
Q Consensus       315 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~----  385 (493)
                      +.... .+.....     ......+..+....+..               ++..+.+..++.....     ...+.    
T Consensus       339 ~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWi---------------Gt~~~Gl~~~~~~~~~-----~~~~~~~~~  397 (795)
T 4a2l_A          339 RNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWI---------------GTNDGGLNLYNPITQR-----FTSYTLQED  397 (795)
T ss_dssp             GGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEE---------------EESSSCEEEECTTTCC-----EEEECCC--
T ss_pred             cccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEE---------------EECCCCeEEEcCCCCc-----EEEEecCCC
Confidence            54321 1111100     01111112222221111               1222223333332111     11111    


Q ss_pred             -----cCCCCEeEEEEeCCCe-EEEEeCCCeEEEEECCCCcEEEEec-----CCCcEEEEEEccCCCCEEEEEeCCCeEE
Q 011126          386 -----GHSSEVLDLSWSKNGF-LLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (493)
Q Consensus       386 -----~h~~~V~~l~~sp~g~-l~sgs~Dg~V~lWd~~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~  454 (493)
                           .....|.++...++|. |..|+.++-|.+||..+++......     ....|.++...+ ++++.+.. .+ -|.
T Consensus       398 ~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt-~~-Gl~  474 (795)
T 4a2l_A          398 ESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGT-LS-ALV  474 (795)
T ss_dssp             ----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEE-SS-CEE
T ss_pred             CcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEe-cC-cee
Confidence                 1245799999988886 9999988889999998876544332     346799999988 77766554 44 489


Q ss_pred             EEeCCCCeEEEecC-------CCCCeEEEEEccCCCEEEEee
Q 011126          455 IWEVRRCQVVDYTD-------IREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       455 IWdl~~~~~~~~~~-------~~~~I~sv~~spdG~~l~s~s  489 (493)
                      +||..+++...+..       ....|.++...++|++.+...
T Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~  516 (795)
T 4a2l_A          475 RFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE  516 (795)
T ss_dssp             EEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES
T ss_pred             EEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC
Confidence            99999887765432       235799999999998776543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.22  E-value=0.012  Score=63.41  Aligned_cols=43  Identities=14%  Similarity=0.156  Sum_probs=29.9

Q ss_pred             CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       450 Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +|.|+.||+.+++++....+..++....+...|..+++++.|.
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg  496 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADG  496 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTS
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCC
Confidence            4789999999999885444444444446666777777776553

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.20  E-value=0.006  Score=63.63  Aligned_cols=187  Identities=10%  Similarity=0.073  Sum_probs=115.2

Q ss_pred             EEEEECCCcEEEEecCCCeeeeeeeccCCCCce----------E-------------------EEeeCCCCceeeeeccC
Q 011126          299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC----------L-------------------YFTINHLSQLIPIDVDK  349 (493)
Q Consensus       299 Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~----------~-------------------~~~~~~~~~~~~~~~~~  349 (493)
                      +.||+..|.|+|+-+.+++.+..+......+..          +                   .+.............+.
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            578899999999999999888777643322110          0                   00011111111111111


Q ss_pred             ccccceeeeecCCCceEEEcCCCceeecccceEEEe-cCCCCEeEEEE-e-CCC-eEEEEe------------------C
Q 011126          350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSW-S-KNG-FLLSSS------------------A  407 (493)
Q Consensus       350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~-s-p~g-~l~sgs------------------~  407 (493)
                      ..-.....+....+..+.+++...+..    ...+. .....+..+++ . |++ +++.++                  .
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~----~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKC----DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEE----EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceE----eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence            122233334444555566666665443    22112 12346788888 4 887 776664                  3


Q ss_pred             CCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC------------------------------------
Q 011126          408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG------------------------------------  451 (493)
Q Consensus       408 Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg------------------------------------  451 (493)
                      ++.|.+.|..+.+.+..+.-......++++| +++++++.+.+.                                    
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             CceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            4689999999999888887444566788999 899988888653                                    


Q ss_pred             --eEEEEeCCC--CeE-EEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          452 --KVRIWEVRR--CQV-VDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       452 --~V~IWdl~~--~~~-~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                        .|.|.|..+  ++. +...........+.++|||+++++++.
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~  296 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK  296 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECT
T ss_pred             ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCC
Confidence              377777776  433 334434456678999999999988753

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.15  E-value=0.1  Score=51.10  Aligned_cols=242  Identities=14%  Similarity=0.105  Sum_probs=117.2

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC---CCEEEEEEC-C-----Cc
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGGE-D-----GT  307 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~-D-----g~  307 (493)
                      ....++|.|+|+++++ ...|+|++++ ......+..+.   .+.........|+|+|+   +.+|+.+.. .     ..
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~---v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELS---VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecce---EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            3445899999986555 4569999998 32211111110   11223456899999998   555544433 2     56


Q ss_pred             EEEEecCCCee-----e-eeeec---cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126          308 VRVWKVIEHER-----L-DGFDV---QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (493)
Q Consensus       308 V~iWdl~~~~~-----~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (493)
                      |..|++..+..     + ..+..   .......+.+.+++  .++...-+........ -.....+.++.++....-...
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~G~~~~~~~~~-d~~~~~g~I~ri~~dG~~p~~  183 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG--MLYVTTGEVYERELAQ-DLASLGGKILRLTPEGEPAPG  183 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS--CEEEECCCTTCGGGGG-CTTCSSSEEEEECTTSSBCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC--CEEEEECCCCCCcccc-CCCCCceEEEEEcCCCCCCCC
Confidence            77777764321     1 11221   11123344444433  2332221111100000 001122344444332100000


Q ss_pred             ---------cceEEEecCCCCEeEEEEeC-CC-eEEEEeCCCeE------EEEECCCCc------------------EEE
Q 011126          379 ---------KPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTV------RLWQVGIDR------------------CLR  423 (493)
Q Consensus       379 ---------~~~~~~~~h~~~V~~l~~sp-~g-~l~sgs~Dg~V------~lWd~~~~~------------------~~~  423 (493)
                               ....-..+|. ....++|+| ++ ++++-.....+      .|.-+..+.                  ++.
T Consensus       184 npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~  262 (352)
T 2ism_A          184 NPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY  262 (352)
T ss_dssp             CTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             CcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence                     0111122332 356889999 56 43333322221      232222221                  223


Q ss_pred             EecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe-------EEEecCCCCCeEEEEEccCCCEEEEee
Q 011126          424 VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-------VVDYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       424 ~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~-------~~~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .+.+......++| . ++.++++.-..+.|...++....       ...+......+..+++.|||.++++..
T Consensus       263 ~~~~~~ap~G~~~-~-~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          263 FWPQGFPPGNLAF-F-RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             ECTTCCCEEEEEE-E-TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             ecCCCCCCcceEE-E-CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            3333445677888 3 67777776677788888776432       122323346799999999998776653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.11  E-value=0.016  Score=58.69  Aligned_cols=100  Identities=8%  Similarity=0.170  Sum_probs=62.1

Q ss_pred             CCEeEEEEeCCC-eEEEEeC-CC----eEEEEECCCCcEE--EEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          389 SEVLDLSWSKNG-FLLSSSA-DK----TVRLWQVGIDRCL--RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~sgs~-Dg----~V~lWd~~~~~~~--~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      .....|+|+++| +|+.+.. .+    .+.+.+. .+...  ..+........++++|.++.++++-..+++|+.++..+
T Consensus       179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~  257 (430)
T 3tc9_A          179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTT  257 (430)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred             CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            456788899887 4555443 21    2333332 22221  22222344567889995666666766789999999988


Q ss_pred             CeEEEe--cCCCCCeEEEEEccCCCEEEEee
Q 011126          461 CQVVDY--TDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       461 ~~~~~~--~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      +....+  .........|+|+|+|++|+++.
T Consensus       258 ~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          258 QETTPLFTIQDSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             TEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             CcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence            765322  22234578899999999666554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.02  E-value=0.046  Score=57.74  Aligned_cols=79  Identities=10%  Similarity=0.059  Sum_probs=52.8

Q ss_pred             CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC--CeEEEEEccCCCE
Q 011126          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE--IVSAVCYCPDGKV  484 (493)
Q Consensus       407 ~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~--~I~sv~~spdG~~  484 (493)
                      ..+.|.-||+.+++.+-...+..++..-.+.. .+.++..++.||.|+.||.++++++.......  ...-+.|..+|+.
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CcCeEEEEECCCCCEEeEecCCCCccCcceEe-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            45789999999999887775433322211222 56777789999999999999999884322221  2233567788874


Q ss_pred             EE
Q 011126          485 RQ  486 (493)
Q Consensus       485 l~  486 (493)
                      .+
T Consensus       530 yv  531 (599)
T 1w6s_A          530 YV  531 (599)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.00  E-value=0.18  Score=49.31  Aligned_cols=100  Identities=13%  Similarity=0.192  Sum_probs=62.8

Q ss_pred             CCEeEEEEeCCC-eEEEEeC---C------------CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEE-eCCC
Q 011126          389 SEVLDLSWSKNG-FLLSSSA---D------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDG  451 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~sgs~---D------------g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sg-s~Dg  451 (493)
                      ...+++.+.++| ++++...   |            ..=+||.+..+++......-...+.|+|+| |+++|+.+ +..+
T Consensus       165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~sp-Dg~~lYvadt~~~  243 (355)
T 3sre_A          165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISP-DGKYVYIAELLAH  243 (355)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECT-TSSEEEEEEGGGT
T ss_pred             CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcceECC-CCCEEEEEeCCCC
Confidence            356788888888 4444331   1            223344443344333333445689999999 88766655 4578


Q ss_pred             eEEEEeCCC-CeEE--EecCCCCCeEEEEEcc-CCCEEEEee
Q 011126          452 KVRIWEVRR-CQVV--DYTDIREIVSAVCYCP-DGKVRQNSA  489 (493)
Q Consensus       452 ~V~IWdl~~-~~~~--~~~~~~~~I~sv~~sp-dG~~l~s~s  489 (493)
                      +|+.|++.. +++.  .........-.+++.+ +|.+.+++.
T Consensus       244 ~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          244 KIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             eEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence            999999863 4332  1223456788899999 599877553

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.84  E-value=0.16  Score=49.42  Aligned_cols=178  Identities=13%  Similarity=0.220  Sum_probs=106.0

Q ss_pred             CCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCC--CceEEEc--C
Q 011126          295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS--DLTCVVL--P  370 (493)
Q Consensus       295 dg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~--~  370 (493)
                      ...+++.....+-+.+||+ +++.+..+..  .....+.+.+.       +....... .........  ...+.++  +
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~-------~~l~g~~~-dla~as~R~~~~n~l~vf~iD  107 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYD-------FPLNGKKV-DIAAASNRSEGKNTIEIYAID  107 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEE-------EEETTEEE-EEEEEEECSTTCCEEEEEEEC
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecc-------cccCCceE-eEEEEeCCCCCCCeEEEEEEC
Confidence            4456666677788999999 8888777643  22233332221       01111110 011111222  2334343  2


Q ss_pred             CCceeecccceEEEe-------cCCCCEeEEEE--eCC-C--eEEEEeCCCeEEEEECC-------CCcEEEEecCCCcE
Q 011126          371 PKVFRLLEKPLHEFQ-------GHSSEVLDLSW--SKN-G--FLLSSSADKTVRLWQVG-------IDRCLRVFSHNNYV  431 (493)
Q Consensus       371 ~~~~~~~~~~~~~~~-------~h~~~V~~l~~--sp~-g--~l~sgs~Dg~V~lWd~~-------~~~~~~~~~h~~~V  431 (493)
                      +...     ++..+.       .....+..+++  +|. +  +++....++.+..|++.       +.+.++.|.....+
T Consensus       108 p~~~-----~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~  182 (355)
T 3amr_A          108 GKNG-----TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQT  182 (355)
T ss_dssp             TTTC-----CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCE
T ss_pred             CCCC-----ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCc
Confidence            2111     122111       11155667777  664 4  68888899999999983       44677888888889


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEeCC-----CCeEEEec---CCCCCeEEEEE--ccCCC-EEEEee
Q 011126          432 TSVAFNPVDDNYFISGSIDGKVRIWEVR-----RCQVVDYT---DIREIVSAVCY--CPDGK-VRQNSA  489 (493)
Q Consensus       432 ~~v~fsp~d~~~l~sgs~Dg~V~IWdl~-----~~~~~~~~---~~~~~I~sv~~--spdG~-~l~s~s  489 (493)
                      -.+...+ ....|..+-.+.-|..++..     +++++...   .....+..|++  .++|+ +|++++
T Consensus       183 EgcvvDd-~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs  250 (355)
T 3amr_A          183 EGMAADD-EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS  250 (355)
T ss_dssp             EEEEEET-TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             ceEEEcC-CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence            9999998 77888888898777777755     35566433   23346888877  67777 676665

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.81  E-value=0.36  Score=52.50  Aligned_cols=229  Identities=9%  Similarity=0.009  Sum_probs=122.1

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCcccccccc-------ccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSL-------YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~-------~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      +.++...++|. |..|+..+-|.+++...........       .......-....|.+|...++|. |..|..++-|..
T Consensus       260 i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~  337 (781)
T 3v9f_A          260 IFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINF  337 (781)
T ss_dssp             EEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEE
T ss_pred             EEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEE
Confidence            44556666665 4445554557778766433111000       00000012346799999998886 555776777888


Q ss_pred             EecCCCeeeeeeecc-------C-CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE
Q 011126          311 WKVIEHERLDGFDVQ-------D-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  382 (493)
                      ++..+..... +...       . .......+..+....+..               ++....+..++........- ..
T Consensus       338 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi---------------gt~~~Gl~~~~~~~~~~~~~-~~  400 (781)
T 3v9f_A          338 ISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQGKLWI---------------GTDGGGINVFENGKRVAIYN-KE  400 (781)
T ss_dssp             ECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTTSCEEE---------------EEBSSCEEEEETTEEEEECC---
T ss_pred             eCCCCCccee-eccCccccccCCCCCcceEEEEEcCCCCEEE---------------EeCCCcEEEEECCCCeEEEc-cC
Confidence            9876543221 1110       0 001111111122121111               11111222232221111000 00


Q ss_pred             EEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          383 EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       383 ~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      ........|.+|...++|.|..|+.++-|..+|..+++......   ....|.++...+ ++.+.+ |+. +-|.+||..
T Consensus       401 ~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~  477 (781)
T 3v9f_A          401 NRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLA  477 (781)
T ss_dssp             ---CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESS
T ss_pred             CCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCC
Confidence            00223467999998888866678877789999988775543321   346799999887 666554 455 559999998


Q ss_pred             CCeEEEecCC------CCCeEEEEEccCCCEEEEe
Q 011126          460 RCQVVDYTDI------REIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       460 ~~~~~~~~~~------~~~I~sv~~spdG~~l~s~  488 (493)
                      +++...+...      ...|.++...++|.+.+..
T Consensus       478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt  512 (781)
T 3v9f_A          478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT  512 (781)
T ss_dssp             SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred             CCeEEecccCcccccccceeEEEEEcCCCCEEEEE
Confidence            8765443221      3679999999999877654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.75  E-value=0.075  Score=57.77  Aligned_cols=73  Identities=16%  Similarity=0.121  Sum_probs=45.7

Q ss_pred             cccceeccCCCeEEeeecC-----CeEEEEECCCccccccccccceeee-cccCCEEEEEEccCCCEEEEEECC---CcE
Q 011126          238 HGSATLKPGDHELTLGQRM-----RRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGED---GTV  308 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~d-----g~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~D---g~V  308 (493)
                      ...++|+|||+.|+....+     ..|.++++.+....-..     .+. .+......+.|+|||++|+....+   ..|
T Consensus       223 ~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-----v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l  297 (751)
T 2xe4_A          223 NGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVC-----LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEV  297 (751)
T ss_dssp             CSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEE-----EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred             eeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEE-----EEecCCCceEEEEEECCCCCEEEEEecCCCCceE
Confidence            3458999999988877665     36777887654321111     111 223446788999999988776533   245


Q ss_pred             EEEecCC
Q 011126          309 RVWKVIE  315 (493)
Q Consensus       309 ~iWdl~~  315 (493)
                      .++|+.+
T Consensus       298 ~~~d~~~  304 (751)
T 2xe4_A          298 HLLDLRK  304 (751)
T ss_dssp             EEEESSS
T ss_pred             EEEECCC
Confidence            5566544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.74  E-value=0.08  Score=51.06  Aligned_cols=99  Identities=10%  Similarity=0.077  Sum_probs=70.7

Q ss_pred             EeEEEE---eCCC-eEEEEe-------------CCCeEEEEECC---CCcEEEEecC--------------CCcEEEEEE
Q 011126          391 VLDLSW---SKNG-FLLSSS-------------ADKTVRLWQVG---IDRCLRVFSH--------------NNYVTSVAF  436 (493)
Q Consensus       391 V~~l~~---sp~g-~l~sgs-------------~Dg~V~lWd~~---~~~~~~~~~h--------------~~~V~~v~f  436 (493)
                      +..|.|   .|++ ++++..             .+..|..||+.   +++.+.....              ....+.|+.
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            367888   5777 444332             26789999999   7777655531              125889999


Q ss_pred             ccCCCCEEEEEeCC-CeEEEEeCCCCeEEEec------CCCCCeEEEEEccCCCEEEEeec
Q 011126          437 NPVDDNYFISGSID-GKVRIWEVRRCQVVDYT------DIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       437 sp~d~~~l~sgs~D-g~V~IWdl~~~~~~~~~------~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      .+ +|+..++++.- +.|...+.....+..+.      ......+.|+++|||+.|++...
T Consensus       145 D~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          145 DR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             CT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred             CC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence            99 99999999998 99888888765444321      11223779999999998887643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.71  E-value=0.12  Score=49.88  Aligned_cols=197  Identities=9%  Similarity=0.055  Sum_probs=109.6

Q ss_pred             cceeccCCCeEEeee-cCCeEEEEECCCccccccccccceeeec-ccCCEEEEEE---ccCCCEEEEEEC----------
Q 011126          240 SATLKPGDHELTLGQ-RMRRVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKF---SLDGQYLASGGE----------  304 (493)
Q Consensus       240 ~~~fsp~g~~lasgs-~dg~V~vwd~~~~~~~~~~~~~~~~l~~-H~~~I~~l~f---spdg~~Lasgs~----------  304 (493)
                      ++.|++....|..++ ..++|..|+..........+... ...+ ....+..|.|   .|+++++++...          
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~-s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGA-SSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTT-CCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCc-cccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            478888666666655 78999999986432211111000 0000 0113579999   688777775431          


Q ss_pred             ---CCcEEEEecC---CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecc
Q 011126          305 ---DGTVRVWKVI---EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (493)
Q Consensus       305 ---Dg~V~iWdl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  378 (493)
                         +..|..+|+.   +++.+........                                                 . 
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~-------------------------------------------------~-  125 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKV-------------------------------------------------Q-  125 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHH-------------------------------------------------H-
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccc-------------------------------------------------c-
Confidence               5667777876   5554332221100                                                 0 


Q ss_pred             cceEEEecC-CCCEeEEEEeCCC-eEEEEeCC-CeEEEEECCCCcEEEEec-------CCCcEEEEEEccCCCCEEEEEe
Q 011126          379 KPLHEFQGH-SSEVLDLSWSKNG-FLLSSSAD-KTVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPVDDNYFISGS  448 (493)
Q Consensus       379 ~~~~~~~~h-~~~V~~l~~sp~g-~l~sgs~D-g~V~lWd~~~~~~~~~~~-------h~~~V~~v~fsp~d~~~l~sgs  448 (493)
                      +......+. .....+++..++| ..++++.- +.|...+.... .+..+.       ..-..+.|+++| ++++|++..
T Consensus       126 ~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~  203 (334)
T 2p9w_A          126 DEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFG  203 (334)
T ss_dssp             HHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEES
T ss_pred             ccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeC-CCCEEEEEc
Confidence            000000011 1236788888888 66667766 77666665543 222221       122367999999 998888887


Q ss_pred             CCCeEEEEeCCCCeE--EEec--C---CCCCeEEE-EEccCCCEEEEee
Q 011126          449 IDGKVRIWEVRRCQV--VDYT--D---IREIVSAV-CYCPDGKVRQNSA  489 (493)
Q Consensus       449 ~Dg~V~IWdl~~~~~--~~~~--~---~~~~I~sv-~~spdG~~l~s~s  489 (493)
                      ..|.|..+|+.+...  +...  +   .-.....| .-..+|+.|+++.
T Consensus       204 ~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~  252 (334)
T 2p9w_A          204 GPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGA  252 (334)
T ss_dssp             SSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEE
T ss_pred             CCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEc
Confidence            799999999985433  3222  2   11233443 4445788755544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.69  E-value=0.56  Score=46.32  Aligned_cols=209  Identities=8%  Similarity=-0.023  Sum_probs=109.6

Q ss_pred             cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCCcEEEEecCCCee
Q 011126          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~V~iWdl~~~~~  318 (493)
                      +.+..+. .+|+.+.. ..|+..+.......        .+......+..|+|++.+..|+ +-...+.|+.+++.....
T Consensus        81 C~~~~~~-~~l~~~~~-~~I~~i~~~~~~~~--------~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~  150 (386)
T 3v65_B           81 CKALGPE-PVLLFANR-IDIRQVLPHRSEYT--------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV  150 (386)
T ss_dssp             EEECSSC-CEEEEECB-SCEEEECTTSCCCE--------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE
T ss_pred             ECCcccc-ceeEeecC-ccceeeccCCCcEE--------EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc
Confidence            3334443 33444333 55777776543211        1222344588999998655554 444677899999876543


Q ss_pred             eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceE-EEecCCCCEeEEEEe
Q 011126          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWS  397 (493)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~s  397 (493)
                      ...+......+..+++.+.. ..++..+.              ....+.+.+...     +... .+.........|++.
T Consensus       151 ~~~~~~~~~~p~glavd~~~-g~lY~~d~--------------~~~~I~~~~~dg-----~~~~~l~~~~l~~P~giavd  210 (386)
T 3v65_B          151 EEVVSTGLESPGGLAVDWVH-DKLYWTDS--------------GTSRIEVANLDG-----AHRKVLLWQSLEKPRAIALH  210 (386)
T ss_dssp             EEEECSSCSCCCCEEEETTT-TEEEEEET--------------TTTEEEECBTTS-----CSCEEEECSSCSCEEEEEEE
T ss_pred             EEEEeCCCCCccEEEEEeCC-CeEEEEcC--------------CCCeEEEEeCCC-----CceEEeecCCCCCCcEEEEE
Confidence            33332222223333332211 11222111              112222222211     1111 122234567899999


Q ss_pred             CCC--eEEEEeCC-CeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCC
Q 011126          398 KNG--FLLSSSAD-KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREI  472 (493)
Q Consensus       398 p~g--~l~sgs~D-g~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~  472 (493)
                      |.+  ++++-... +.|...++.......... .-...+.|+|+|..++++++=...+.|..+|+....... .......
T Consensus       211 p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~  290 (386)
T 3v65_B          211 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH  290 (386)
T ss_dssp             TTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSS
T ss_pred             cCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCC
Confidence            865  44555455 788888887544333332 345688999998445555555667889999987543322 2222345


Q ss_pred             eEEEEE
Q 011126          473 VSAVCY  478 (493)
Q Consensus       473 I~sv~~  478 (493)
                      ...|++
T Consensus       291 P~giav  296 (386)
T 3v65_B          291 PFAITV  296 (386)
T ss_dssp             EEEEEE
T ss_pred             ceEEEE
Confidence            677777

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.64  E-value=0.59  Score=50.71  Aligned_cols=99  Identities=12%  Similarity=0.070  Sum_probs=71.4

Q ss_pred             CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEe---c-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF---S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       388 ~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~---~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      ...|.++...++|.|..|+.++-|.+||..++......   . ....|.++...+ ++.+.+ |+.++-|..+|..+++.
T Consensus       362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~  439 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLWF-GTYLGNISYYNTRLKKF  439 (781)
T ss_dssp             SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEEE-EETTEEEEEECSSSCEE
T ss_pred             CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEEE-EeccCCEEEEcCCCCcE
Confidence            45689999988887777776777899998765433211   1 346799999887 676555 66767799999988877


Q ss_pred             EEecC---CCCCeEEEEEccCCCEEEEe
Q 011126          464 VDYTD---IREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       464 ~~~~~---~~~~I~sv~~spdG~~l~s~  488 (493)
                      ..+..   ....|.++...++|.+.+..
T Consensus       440 ~~~~~~~~~~~~v~~i~~d~~g~lwigt  467 (781)
T 3v9f_A          440 QIIELEKNELLDVRVFYEDKNKKIWIGT  467 (781)
T ss_dssp             EECCSTTTCCCCEEEEEECTTSEEEEEE
T ss_pred             EEeccCCCCCCeEEEEEECCCCCEEEEE
Confidence            65532   34679999999988766543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.61  E-value=0.7  Score=46.47  Aligned_cols=94  Identities=9%  Similarity=0.128  Sum_probs=61.0

Q ss_pred             eEEEEeCCC--eEEEEeCCCeEEEEECC--CCcE--EEEe-c---------------CCCcEEEEEE---------ccCC
Q 011126          392 LDLSWSKNG--FLLSSSADKTVRLWQVG--IDRC--LRVF-S---------------HNNYVTSVAF---------NPVD  440 (493)
Q Consensus       392 ~~l~~sp~g--~l~sgs~Dg~V~lWd~~--~~~~--~~~~-~---------------h~~~V~~v~f---------sp~d  440 (493)
                      ..|+|+|++  ++++-...+.|+.++..  ++..  ...+ .               .-.....+++         .+ +
T Consensus       276 ~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~  354 (433)
T 4hw6_A          276 FHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-E  354 (433)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-C
T ss_pred             ccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-C
Confidence            469999998  44555667899998865  2321  1111 1               1134677999         66 7


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeEEEecCC------------------CCCeEEEEEc-cCCCEEEE
Q 011126          441 DNYFISGSIDGKVRIWEVRRCQVVDYTDI------------------REIVSAVCYC-PDGKVRQN  487 (493)
Q Consensus       441 ~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~------------------~~~I~sv~~s-pdG~~l~s  487 (493)
                      ++++++-...+.|+.++. ++.+..+.+.                  -.....|++. ++|.++++
T Consensus       355 g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa  419 (433)
T 4hw6_A          355 YDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG  419 (433)
T ss_dssp             EEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred             CcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence            778877777889999985 5666543321                  1247899999 56655544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.57  E-value=0.25  Score=46.88  Aligned_cols=97  Identities=13%  Similarity=0.157  Sum_probs=58.0

Q ss_pred             CEeEEEEeCCC-eEEEEeC-CC-eEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe--
Q 011126          390 EVLDLSWSKNG-FLLSSSA-DK-TVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--  462 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs~-Dg-~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~--  462 (493)
                      .+..|++.++| ++++... ++ .|..+|..+++......  .......++..+ ++..+++-..++.|+++|..+++  
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEe
Confidence            46788999988 4444433 22 46667777776544332  233445566555 55555555568999999987653  


Q ss_pred             EEEec---------CCCCCeEEEEEccCCCEEEEee
Q 011126          463 VVDYT---------DIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       463 ~~~~~---------~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      +....         ..-...+.|  +|||+.|+++.
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d  185 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN  185 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence            32110         111245566  89998777664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.55  E-value=0.15  Score=49.15  Aligned_cols=99  Identities=7%  Similarity=0.075  Sum_probs=60.2

Q ss_pred             CCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       388 ~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      ...+..+++.+++.++.++.+|.+++++...+..-..+.     +...+..+.+.| ++.+++++ .+|.| ++....++
T Consensus       204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g-~~g~i-~~S~DgG~  280 (327)
T 2xbg_A          204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAG-GAGAL-LCSQDGGQ  280 (327)
T ss_dssp             SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEE-STTCE-EEESSTTS
T ss_pred             CCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEe-CCCeE-EEeCCCCc
Confidence            446677888888855566678888777433233222221     234588999998 77776665 47766 44455443


Q ss_pred             EE-Eec---CCCCCeEEEEEccCCCEEEEee
Q 011126          463 VV-DYT---DIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       463 ~~-~~~---~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .- ...   .....+.++.|.+++++++++.
T Consensus       281 tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~  311 (327)
T 2xbg_A          281 TWQQDVDVKKVPSNFYKILFFSPDQGFILGQ  311 (327)
T ss_dssp             SCEECGGGTTSSSCCCEEEEEETTEEEEECS
T ss_pred             ccEEcCccCCCCCCeEEEEEECCCceEEEcC
Confidence            22 122   2345688899987777665553

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.54  E-value=0.18  Score=53.92  Aligned_cols=72  Identities=7%  Similarity=0.168  Sum_probs=53.3

Q ss_pred             eEEEEeCCC-eEEEEeCCC-------------------eEEEEECCCCcEEEEec---CC-------CcEEEEEEccCCC
Q 011126          392 LDLSWSKNG-FLLSSSADK-------------------TVRLWQVGIDRCLRVFS---HN-------NYVTSVAFNPVDD  441 (493)
Q Consensus       392 ~~l~~sp~g-~l~sgs~Dg-------------------~V~lWd~~~~~~~~~~~---h~-------~~V~~v~fsp~d~  441 (493)
                      ..+++.|.+ +++.++.++                   .|..+|..+++.+..+.   |.       .++....+.. ++
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G  311 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DG  311 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TT
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CC
Confidence            357888865 777776665                   49999999999988775   21       2333333333 55


Q ss_pred             C---EEEEEeCCCeEEEEeCCCCeEE
Q 011126          442 N---YFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       442 ~---~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      +   +|+.++.+|.++++|..+++++
T Consensus       312 ~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          312 KPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cEEEEEEEECCCCEEEEEECCCCCEe
Confidence            4   7899999999999999999987

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.47  E-value=0.11  Score=52.35  Aligned_cols=69  Identities=13%  Similarity=0.160  Sum_probs=49.6

Q ss_pred             CEeEEEEeC-CC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCC-EEEEEeCCCeEEEEeCC
Q 011126          390 EVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVR  459 (493)
Q Consensus       390 ~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~-~l~sgs~Dg~V~IWdl~  459 (493)
                      ....++++| +| ++++-...+.|..++...+.....+.  .......|+|+| +++ ++++-...+.|+.++..
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p-dG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP-SGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC-CCCEEEEEECCCCEEEEEeCC
Confidence            346788999 66 55566677899999998765533333  334578999999 888 45555567899998765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.40  E-value=0.78  Score=44.56  Aligned_cols=211  Identities=7%  Similarity=-0.038  Sum_probs=109.2

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE-ECCCcEEEEecCCC
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIEH  316 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~V~iWdl~~~  316 (493)
                      ..+.+..+.. +|+.+. ...|+..+.......        .+......+..|+|++....|+-+ ...+.|+.+++...
T Consensus        36 ~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~--------~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~  105 (349)
T 3v64_C           36 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYT--------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS  105 (349)
T ss_dssp             SCEEESSSCC-EEEEEC-BSCEEEECTTSCCEE--------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcccccccCc-eeEeec-ccceEEEeCCCCeeE--------EeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence            3344444533 344333 344666666543211        122233457899999866655544 46778999988765


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEE-EecCCCCEeEEE
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQGHSSEVLDLS  395 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~  395 (493)
                      .....+......+..+++.... ..++..+..              ...+.+.+...     +.... +.........|+
T Consensus       106 ~~~~~~~~~~~~p~glavd~~~-g~ly~~d~~--------------~~~I~~~~~dG-----~~~~~l~~~~l~~P~~ia  165 (349)
T 3v64_C          106 NVEEVVSTGLESPGGLAVDWVH-DKLYWTDSG--------------TSRIEVANLDG-----AHRKVLLWQSLEKPRAIA  165 (349)
T ss_dssp             SCEEEECSSCSCCCEEEEETTT-TEEEEEETT--------------TTEEEEEETTS-----CSCEEEECTTCSCEEEEE
T ss_pred             CceEEEeCCCCCccEEEEecCC-CeEEEEcCC--------------CCeEEEEcCCC-----CceEEEEeCCCCCcceEE
Confidence            4333222222233333332211 112222111              11222222111     11111 222345678999


Q ss_pred             EeCCC--eEEEEeCC-CeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCC
Q 011126          396 WSKNG--FLLSSSAD-KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIR  470 (493)
Q Consensus       396 ~sp~g--~l~sgs~D-g~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~  470 (493)
                      +.|.+  ++++-... +.|...++........+. .-...+.|+|+|..+.++++=...++|..+|+....... .....
T Consensus       166 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~  245 (349)
T 3v64_C          166 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL  245 (349)
T ss_dssp             EETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred             EecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCC
Confidence            99854  55555555 788888887543333222 345678999998444455555567899999987543222 22223


Q ss_pred             CCeEEEEE
Q 011126          471 EIVSAVCY  478 (493)
Q Consensus       471 ~~I~sv~~  478 (493)
                      .....|++
T Consensus       246 ~~P~giav  253 (349)
T 3v64_C          246 PHPFAITV  253 (349)
T ss_dssp             SSEEEEEE
T ss_pred             CCceEEEE
Confidence            45677777

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.38  E-value=0.85  Score=45.25  Aligned_cols=101  Identities=9%  Similarity=-0.011  Sum_probs=68.6

Q ss_pred             CCEeEEEEeC-CC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeC-CCeEEEEeCCCCeEE
Q 011126          389 SEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVV  464 (493)
Q Consensus       389 ~~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~IWdl~~~~~~  464 (493)
                      .....|++.+ .+ ++++-...+.|.+.++........+. .......|+++|..+.++.+-.. .+.|...++......
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~  238 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  238 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence            4567888887 44 66666778899999988665544444 44568899999944444444323 478999998765443


Q ss_pred             Ee-cCCCCCeEEEEEccCCCEEEEee
Q 011126          465 DY-TDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       465 ~~-~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .+ ...-...+.|+++|++..|+.+-
T Consensus       239 ~~~~~~l~~P~glavd~~~~~lY~aD  264 (400)
T 3p5b_L          239 SLVTENIQWPNGITLDLLSGRLYWVD  264 (400)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCceEEEEEEeCCCEEEEEE
Confidence            32 23335689999999888777653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.30  E-value=0.8  Score=43.69  Aligned_cols=100  Identities=9%  Similarity=-0.022  Sum_probs=66.1

Q ss_pred             CEeEEEEeCC-C-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCC-CeEEEEeCCCCeEEE
Q 011126          390 EVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQVVD  465 (493)
Q Consensus       390 ~V~~l~~sp~-g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D-g~V~IWdl~~~~~~~  465 (493)
                      ....|++.+. + ++++-...+.|.+.++........+. .......++++|..+.++++.... +.|...++.......
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~  157 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  157 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence            3467888864 4 55666778899999987654443333 345778999999444444444333 789999887544332


Q ss_pred             e-cCCCCCeEEEEEccCCCEEEEee
Q 011126          466 Y-TDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       466 ~-~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      + ...-...+.|+++|++..|+.+.
T Consensus       158 ~~~~~~~~P~gla~d~~~~~lY~~D  182 (316)
T 1ijq_A          158 LVTENIQWPNGITLDLLSGRLYWVD  182 (316)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCceEEEEeccCCEEEEEE
Confidence            2 22345688999999887776654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.23  E-value=0.095  Score=52.92  Aligned_cols=101  Identities=10%  Similarity=0.175  Sum_probs=58.4

Q ss_pred             CCEeEEEEeCCC-eEEEEeCC---Ce-EEEEECCCCcE-EEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          389 SEVLDLSWSKNG-FLLSSSAD---KT-VRLWQVGIDRC-LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~sgs~D---g~-V~lWd~~~~~~-~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      .....|+++++| ++++....   .. +...+...+.. ...+........++++|.++.++++-..++.|+.+|..++.
T Consensus       182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~  261 (433)
T 4hw6_A          182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT  261 (433)
T ss_dssp             SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC
T ss_pred             CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe
Confidence            346788888888 44444321   12 22223221111 01222334456788998566666666677899999998776


Q ss_pred             EE-Ee--cCCCCCeEEEEEccCCCEEEEee
Q 011126          463 VV-DY--TDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       463 ~~-~~--~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      +. .+  .........|+|+|+|+.|+++.
T Consensus       262 ~~~~~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          262 LTEEEVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             EEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             EEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence            62 22  12222345799999999666554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.17  E-value=0.67  Score=45.74  Aligned_cols=196  Identities=7%  Similarity=-0.084  Sum_probs=105.0

Q ss_pred             ccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE-EEEECCCcEEEEecCCC
Q 011126          239 GSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       239 ~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~~~  316 (493)
                      ..++|++.+. ++.+-...++|..++........       .+.........|++.+.+..| ++-...+.|.+.++...
T Consensus       119 ~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~  191 (386)
T 3v65_B          119 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  191 (386)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred             EEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence            3478887554 44555567889999877543211       111122344678888755544 44455677888887644


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEE
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLS  395 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~  395 (493)
                      .....+......+..+.+.+.. ..++..+...             ...+..++..     ......+ .........|+
T Consensus       192 ~~~~l~~~~l~~P~giavdp~~-g~ly~td~~~-------------~~~I~r~~~d-----G~~~~~~~~~~~~~PnGla  252 (386)
T 3v65_B          192 HRKVLLWQSLEKPRAIALHPME-GTIYWTDWGN-------------TPRIEASSMD-----GSGRRIIADTHLFWPNGLT  252 (386)
T ss_dssp             SCEEEECSSCSCEEEEEEETTT-TEEEEEECSS-------------SCEEEEEETT-----SCSCEEEECSSCSCEEEEE
T ss_pred             ceEEeecCCCCCCcEEEEEcCC-CeEEEeccCC-------------CCEEEEEeCC-----CCCcEEEEECCCCCeeeEE
Confidence            3222222222223333333222 1222222211             0122222111     1111111 12234578999


Q ss_pred             EeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       396 ~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      |+|++  ++++-+..+.|..+|+........+. .......|++ . .+.++++-...+.|..++..+++
T Consensus       253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          253 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-F-EDSLYWTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             EEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-E-CCEEEEeeCCCCeEEEEECCCCc
Confidence            99765  55666677889999987544333333 3456778888 3 56777777778899999965554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.05  E-value=1  Score=48.96  Aligned_cols=101  Identities=8%  Similarity=-0.036  Sum_probs=68.6

Q ss_pred             CCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCC-CeEEEEeCCCCeEE
Q 011126          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQVV  464 (493)
Q Consensus       389 ~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~D-g~V~IWdl~~~~~~  464 (493)
                      .....|++.+.+  ++++-...+.|.+.++........+. .......|+++|..+.++++-... ++|.+.++......
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~  550 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  550 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence            345678888765  66666778899999988665444443 445688999999445455554333 78999999866554


Q ss_pred             Eec-CCCCCeEEEEEccCCCEEEEee
Q 011126          465 DYT-DIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       465 ~~~-~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .+. ..-...+.|++.|.+..|+.+-
T Consensus       551 ~lv~~~l~~P~GLavD~~~~~LYwaD  576 (791)
T 3m0c_C          551 SLVTENIQWPNGITLDLLSGRLYWVD  576 (791)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCceEEEEecCCCeEEEEe
Confidence            433 2335788999998877776653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.02  E-value=0.44  Score=49.88  Aligned_cols=72  Identities=10%  Similarity=-0.014  Sum_probs=41.7

Q ss_pred             CCeEEeeecCCeEEEEECCCccccccccccceeeeccc--CCEEE-EEEccCCCEEEEEEC------CCcEEEEecCCCe
Q 011126          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE--GSILT-MKFSLDGQYLASGGE------DGTVRVWKVIEHE  317 (493)
Q Consensus       247 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~--~~I~~-l~fspdg~~Lasgs~------Dg~V~iWdl~~~~  317 (493)
                      +..+++++.++.|..+|..+.+..-..     .+..+.  ..+.+ ... .++ .++.++.      ++.|+.+|..+++
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~-----~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~  187 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEV-----EVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGE  187 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEE-----ECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEe-----cCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCc
Confidence            456777778899999988765432110     011110  01110 001 134 5555554      7999999999999


Q ss_pred             eeeeeecc
Q 011126          318 RLDGFDVQ  325 (493)
Q Consensus       318 ~~~~~~~~  325 (493)
                      .+..+...
T Consensus       188 ~~W~~~~~  195 (571)
T 2ad6_A          188 LKWRAFAT  195 (571)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEccC
Confidence            88776643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.95  E-value=0.17  Score=51.77  Aligned_cols=101  Identities=7%  Similarity=0.135  Sum_probs=61.7

Q ss_pred             CCEeEEEE-------eCCC-eEEEEeCCC-------eEEEEECCC-CcEE-----EEecCCCcEEEEEEccCCCCEEEEE
Q 011126          389 SEVLDLSW-------SKNG-FLLSSSADK-------TVRLWQVGI-DRCL-----RVFSHNNYVTSVAFNPVDDNYFISG  447 (493)
Q Consensus       389 ~~V~~l~~-------sp~g-~l~sgs~Dg-------~V~lWd~~~-~~~~-----~~~~h~~~V~~v~fsp~d~~~l~sg  447 (493)
                      .....|+|       +++| .|+.+...+       .|.+.+... +...     ..+.-......++++|.++.++++-
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd  265 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS  265 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEE
Confidence            35678888       8888 455554443       255665333 1211     1222112345778899556667777


Q ss_pred             eCCCeEEEEeCC-------CCeE--------------EEecCCCCCeEEEEEccCCCEEEEee
Q 011126          448 SIDGKVRIWEVR-------RCQV--------------VDYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       448 s~Dg~V~IWdl~-------~~~~--------------~~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      ..++.|+.+|+.       ++.+              +...........|+|+|+|+.|+++-
T Consensus       266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV  328 (496)
T ss_dssp             TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence            788899999997       5543              11222334568999999999666553

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.94  E-value=1.3  Score=43.00  Aligned_cols=242  Identities=12%  Similarity=0.039  Sum_probs=117.7

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC---CCEEEEEEC----C----
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGGE----D----  305 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~----D----  305 (493)
                      ....++|.|+|+++++ ...|+|++++.... ..+..+.   .+.........|+|+|+   +..|+.+..    +    
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G~-~~~~~~~---v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLISPSGK-KLVASFD---VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEECSSCE-EEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEeCCCc-eEeeccc---eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            3445899999985555 45699999863322 1111111   11122456899999997   445544432    3    


Q ss_pred             CcEEEEecCCC--e-----ee-eeeecc-CCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee
Q 011126          306 GTVRVWKVIEH--E-----RL-DGFDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (493)
Q Consensus       306 g~V~iWdl~~~--~-----~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  376 (493)
                      ..|..|+....  .     .+ ..+... ......+.+.+++  .++...-+........ -.....+.++.++....-.
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG--~Lyvt~G~~~~~~~~~-d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG--MLYITTGDAADPRLAQ-DLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS--CEEEECCCTTCGGGGT-CTTCCSSEEEEECTTSCCC
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC--cEEEEECCCCCCcccc-CCCCCCeEEEEEcCCCCCC
Confidence            46777776543  1     11 112111 1123334444433  2322211111100000 0011123344443321100


Q ss_pred             ccc----ceEEEecCCCCEeEEEEeC-CCeEEEEeC--CC--eEEEEECCC----------------CcEEEEe-cCCCc
Q 011126          377 LEK----PLHEFQGHSSEVLDLSWSK-NGFLLSSSA--DK--TVRLWQVGI----------------DRCLRVF-SHNNY  430 (493)
Q Consensus       377 ~~~----~~~~~~~h~~~V~~l~~sp-~g~l~sgs~--Dg--~V~lWd~~~----------------~~~~~~~-~h~~~  430 (493)
                      ...    ...-..+|.. ...|+|+| +|.|..+..  +.  .|.+.....                ..++..+ .....
T Consensus       182 ~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a  260 (354)
T 3a9g_A          182 ADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWA  260 (354)
T ss_dssp             TTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred             CCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence            000    0111234433 46899999 564443332  21  233322110                0123333 22346


Q ss_pred             EEEEEEc-------cCCCCEEEEEeCCCeEEEEeCCCC-eEE---Eec-CCCCCeEEEEEccCCCEEEEe
Q 011126          431 VTSVAFN-------PVDDNYFISGSIDGKVRIWEVRRC-QVV---DYT-DIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       431 V~~v~fs-------p~d~~~l~sgs~Dg~V~IWdl~~~-~~~---~~~-~~~~~I~sv~~spdG~~l~s~  488 (493)
                      ...++|.       . ++.++++.-..+.|...++... ++.   .+. .....+..+++.|||.+.++.
T Consensus       261 p~G~~~y~g~~fp~~-~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          261 PSGASFVHGDMFPGL-RGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             EEEEEECCSSSCGGG-TTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             CcceEEECCCCCccc-CCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            7788883       3 6777777777788999998753 332   232 234679999999999877665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.94  E-value=1.2  Score=42.43  Aligned_cols=176  Identities=7%  Similarity=-0.027  Sum_probs=94.0

Q ss_pred             ccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE-EEEECCCcEEEEecCCC
Q 011126          239 GSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       239 ~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~~~  316 (493)
                      ..++|++.+. ++.+-...+.|..++....... ..  ....+...-.....|++.+.+..| ++-...+.|.+.++...
T Consensus        33 ~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~-~~--~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           33 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SS--YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             EEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC-cc--cEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            4588888654 4455556789999987642100 00  000111122345678888755444 44455677877776432


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (493)
                      ... .+                                                             +.........|++
T Consensus       110 ~~~-~~-------------------------------------------------------------~~~~~~~P~~iav  127 (316)
T 1ijq_A          110 KRK-TL-------------------------------------------------------------FRENGSKPRAIVV  127 (316)
T ss_dssp             SEE-EE-------------------------------------------------------------EECTTCCEEEEEE
T ss_pred             ceE-EE-------------------------------------------------------------EECCCCCcceEEe
Confidence            110 00                                                             0111234578888


Q ss_pred             eCCC-e-EEEEeCC-CeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe---cCC
Q 011126          397 SKNG-F-LLSSSAD-KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY---TDI  469 (493)
Q Consensus       397 sp~g-~-l~sgs~D-g~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~---~~~  469 (493)
                      .|.+ . +++.... +.|...++.......... .-...+.|+++|..++++++-...+.|..+|+.......+   ...
T Consensus       128 dp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~  207 (316)
T 1ijq_A          128 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR  207 (316)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT
T ss_pred             CCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCc
Confidence            8854 4 4444333 678888876433322222 3456889999983344445555667999999975432221   122


Q ss_pred             CCCeEEEEEc
Q 011126          470 REIVSAVCYC  479 (493)
Q Consensus       470 ~~~I~sv~~s  479 (493)
                      ......|++.
T Consensus       208 ~~~P~giav~  217 (316)
T 1ijq_A          208 LAHPFSLAVF  217 (316)
T ss_dssp             TSSEEEEEEE
T ss_pred             cCCcEEEEEE
Confidence            3345677774

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.60  E-value=1.7  Score=41.61  Aligned_cols=99  Identities=13%  Similarity=0.133  Sum_probs=60.7

Q ss_pred             CCCEeEEEEeCCC-eEEEEeCCCeEEEEEC--CCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~--~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      ...+..+++.+++ +++.+...+..+-+|-  .+-+.+ .......+..+.+.| ++.+++ ++.+|.+++++...++.-
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~-~g~~~~-~~~~G~~~~s~~D~G~tW  238 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTP-DGRLWM-IVNGGKIAFSDPDNSENW  238 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECT-TSCEEE-EETTTEEEEEETTEEEEE
T ss_pred             CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECC-CCCEEE-EeCCceEEEecCCCCCee
Confidence            3467788898888 5555444444444443  222232 223556788999998 777654 456888888754434432


Q ss_pred             E-ec-C---CCCCeEEEEEccCCCEEEEee
Q 011126          465 D-YT-D---IREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       465 ~-~~-~---~~~~I~sv~~spdG~~l~s~s  489 (493)
                      . .. .   ....+.++.+.|++.+++++.
T Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~  268 (327)
T 2xbg_A          239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG  268 (327)
T ss_dssp             CCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred             EeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence            2 11 1   223589999999988887764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=95.57  E-value=1.8  Score=41.84  Aligned_cols=196  Identities=7%  Similarity=-0.086  Sum_probs=105.5

Q ss_pred             ccceeccCCCeE-EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE-EEEECCCcEEEEecCCC
Q 011126          239 GSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       239 ~~~~fsp~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~~~  316 (493)
                      ..++|++.+..| .+-...+.|..++........       .+.........|++.+.+..| ++-...+.|.+.++...
T Consensus        76 ~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  148 (349)
T 3v64_C           76 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  148 (349)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEEeccccEEEEEeccCCceEEEecCCCCceE-------EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence            347888755544 455567889888877543211       111122345688998755544 55555678999988654


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEE
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLS  395 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~  395 (493)
                      .....+......+..+++.+.. ..++..+...             ...+..++..     ......+ ...-.....|+
T Consensus       149 ~~~~l~~~~l~~P~~iavdp~~-g~ly~td~~~-------------~~~I~r~~~d-----G~~~~~~~~~~~~~PnGla  209 (349)
T 3v64_C          149 HRKVLLWQSLEKPRAIALHPME-GTIYWTDWGN-------------TPRIEASSMD-----GSGRRIIADTHLFWPNGLT  209 (349)
T ss_dssp             SCEEEECTTCSCEEEEEEETTT-TEEEEEECSS-------------SCEEEEEETT-----SCSCEESCCSSCSCEEEEE
T ss_pred             ceEEEEeCCCCCcceEEEecCc-CeEEEeccCC-------------CCEEEEEeCC-----CCCcEEEEECCCCCcceEE
Confidence            3322222222223333333222 2222222211             0122222111     0111111 11234578999


Q ss_pred             EeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       396 ~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      ++|++  ++++-...+.|..+|+........+. .......|++ . .+.++++-...+.|..++..+++
T Consensus       210 ~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          210 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-F-EDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-E-CCEEEEecCCCCeEEEEEccCCC
Confidence            99865  55566677899999987544333332 3456678888 3 56677777778889999865554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.41  E-value=0.49  Score=47.10  Aligned_cols=68  Identities=13%  Similarity=0.247  Sum_probs=48.9

Q ss_pred             CCCCEeEEEEeCCC----eEEEEeCCCeEEEEECCCC--cEEEEec----------CCCcEEEEEEccCCCCEEEEEe--
Q 011126          387 HSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGID--RCLRVFS----------HNNYVTSVAFNPVDDNYFISGS--  448 (493)
Q Consensus       387 h~~~V~~l~~sp~g----~l~sgs~Dg~V~lWd~~~~--~~~~~~~----------h~~~V~~v~fsp~d~~~l~sgs--  448 (493)
                      ...+|..+.|+|-+    .|++-..|++||+||+...  ++. .+.          ....|.+++|.+ ++-.|...+  
T Consensus       123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t  200 (452)
T 3pbp_A          123 PKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTT  200 (452)
T ss_dssp             CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECT
T ss_pred             CCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC-CCcEEEEEecC
Confidence            36789999999965    8999999999999999852  222 222          225788999988 666555544  


Q ss_pred             CCCeEEEE
Q 011126          449 IDGKVRIW  456 (493)
Q Consensus       449 ~Dg~V~IW  456 (493)
                      ..|.|+-.
T Consensus       201 ~~GDIYAl  208 (452)
T 3pbp_A          201 EGGDIFAF  208 (452)
T ss_dssp             TSCEEEEE
T ss_pred             CCCCEEEE
Confidence            66766543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.39  E-value=0.78  Score=46.46  Aligned_cols=33  Identities=9%  Similarity=-0.005  Sum_probs=22.4

Q ss_pred             cCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       284 ~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      -...+.|+|.|+|+++++--..+.|++++..++
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g   58 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESG   58 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence            345689999999987766433346777765433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.35  E-value=0.13  Score=55.42  Aligned_cols=205  Identities=10%  Similarity=-0.052  Sum_probs=104.3

Q ss_pred             cccceeccCCCeEEe-eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCC
Q 011126          238 HGSATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       238 ~~~~~fsp~g~~las-gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~  315 (493)
                      ...++|++.+..|.. -...++|+.+++....... .  ....+.........|++.+. ++++++-...+.|.+.++..
T Consensus       408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~-~--~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg  484 (699)
T 1n7d_A          408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-S--YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  484 (699)
T ss_dssp             CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C-C--CCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred             eEEEccccccCeEEEEecCCCeEEEEecCCCCCCc-c--eEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence            445888886655544 4456789888876411000 0  00001111123456788754 44444445567899999865


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDL  394 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l  394 (493)
                      ......+......+..+++.+... .++..++..             ...+..++...     .....+ .........|
T Consensus       485 ~~~~~l~~~~~~~P~giavDp~~g-~ly~td~~~-------------~~~I~~~~~dG-----~~~~~l~~~~l~~PnGl  545 (699)
T 1n7d_A          485 VKRKTLFREQGSKPRAIVVDPVHG-FMYWTDWGT-------------PAKIKKGGLNG-----VDIYSLVTENIQWPNGI  545 (699)
T ss_dssp             CCEEEECCCSSCCCCCEECCSSSS-CCEECCCSS-------------SCCEEBCCSSS-----CCCCEESCSSCSSCCCE
T ss_pred             CceEEEEeCCCCCcceEEEccCCC-cEEEcccCC-------------CCeEEEEeCCC-----CCeeEEEeCCCCCccEE
Confidence            543333322222333333322221 112111111             01222222110     111111 1122345689


Q ss_pred             EEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 011126          395 SWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (493)
Q Consensus       395 ~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~  466 (493)
                      +|+|++  ++++-+..+.|.++++........+.   .......|++..  +.++++-...+.|..++..+++.+..
T Consensus       546 avd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~~~~~  620 (699)
T 1n7d_A          546 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNL  620 (699)
T ss_dssp             EECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEEEEEC
T ss_pred             EEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCCceEE
Confidence            999875  55666677899999987543333322   123345566654  35666666678999999988887753

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.34  E-value=1.2  Score=46.80  Aligned_cols=71  Identities=8%  Similarity=0.076  Sum_probs=49.3

Q ss_pred             EEEEeCCC-eEEEEeCC----------------CeEEEEECCCCcEEEEec---CC--------CcEEEEEEc-cCCC--
Q 011126          393 DLSWSKNG-FLLSSSAD----------------KTVRLWQVGIDRCLRVFS---HN--------NYVTSVAFN-PVDD--  441 (493)
Q Consensus       393 ~l~~sp~g-~l~sgs~D----------------g~V~lWd~~~~~~~~~~~---h~--------~~V~~v~fs-p~d~--  441 (493)
                      .+++.+.. +++.+..+                ..|.-+|..+++.+-.++   |.        .++. +... . ++  
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~-~G~~  322 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDK-DGKA  322 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECT-TSCE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-Eecccc-CCcE
Confidence            34566654 66655544                489999999999988776   21        1122 2222 3 56  


Q ss_pred             -CEEEEEeCCCeEEEEeCCCCeEEE
Q 011126          442 -NYFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       442 -~~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                       ..++.++.+|.|+++|..+++++.
T Consensus       323 ~~~v~~~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          323 RKLLTHPDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             EEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EEEEEEECCCcEEEEEECCCCCEee
Confidence             577888999999999999999873

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.33  E-value=0.39  Score=44.56  Aligned_cols=105  Identities=10%  Similarity=0.192  Sum_probs=77.0

Q ss_pred             EEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecC--CCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126          383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       383 ~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h--~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl  458 (493)
                      .+.+-...+..|+|+|++  +++....++.|...|.. ++.++.+..  ....-.|++.+ ++.++++.-.++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence            344556689999999976  55667788999999998 888888753  35678899988 8887777667789999988


Q ss_pred             CCCe---EEE---e----cCCCCCeEEEEEccCCCEEEEee
Q 011126          459 RRCQ---VVD---Y----TDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       459 ~~~~---~~~---~----~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      ....   .+.   +    ...+.....|+|+|+++.|.++.
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~  139 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK  139 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE
Confidence            6533   221   1    12344569999999997776654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.31  E-value=3  Score=45.30  Aligned_cols=159  Identities=8%  Similarity=0.001  Sum_probs=85.4

Q ss_pred             ccceeccCCC-eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE-EECCCcEEEEecCCC
Q 011126          239 GSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIEH  316 (493)
Q Consensus       239 ~~~~fsp~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~V~iWdl~~~  316 (493)
                      ..++|++.+. ++++-...++|+.+++...... .  .....+.........|++.+.+..|+. -...+.|.+.++...
T Consensus       427 ~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-~--~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~  503 (791)
T 3m0c_C          427 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-S--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  503 (791)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             EEEeecccCCeeEEeeccceeEEEEeccCCCCC-c--ceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence            3477887544 4455556678888887643210 0  001112223345667888876655544 445667777776432


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEE
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  396 (493)
                      .... +                                                             +.........|++
T Consensus       504 ~~~~-l-------------------------------------------------------------~~~~l~~P~gIaV  521 (791)
T 3m0c_C          504 KRKT-L-------------------------------------------------------------FRENGSKPRAIVV  521 (791)
T ss_dssp             SEEE-E-------------------------------------------------------------EECTTCCEEEEEE
T ss_pred             eEEE-E-------------------------------------------------------------EeCCCCCcceEEE
Confidence            2110 0                                                             0112234677888


Q ss_pred             eCC-Ce-EEEEeC-CCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          397 SKN-GF-LLSSSA-DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       397 sp~-g~-l~sgs~-Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      .|. |+ +++-.. .+.|...++........+. .-...+.|+++|..++++++=...++|...++....
T Consensus       522 Dp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          522 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            876 43 333323 2678887876544433333 335788889987344444444456788888887543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.23  E-value=2.7  Score=41.61  Aligned_cols=203  Identities=9%  Similarity=-0.053  Sum_probs=107.3

Q ss_pred             cccceeccCCCeE-EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCCcEEEEecCC
Q 011126          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       238 ~~~~~fsp~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V~iWdl~~  315 (493)
                      ...++|++.+..| .+-...+.|+.++........   .....+.........|++.+. +++.++-...+.|.+.++..
T Consensus       114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~---~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS---SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC------C---CCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC---cceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            3458898865544 444567888888876422100   001112223456788999884 44445555678899998875


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDL  394 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l  394 (493)
                      ......+......+..+++.+.. ..++..++...             ..+...+..     ......+ ...-.....|
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~-g~ly~td~~~~-------------~~I~~~~~d-----G~~~~~~~~~~l~~P~gl  251 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTP-------------AKIKKGGLN-----GVDIYSLVTENIQWPNGI  251 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTT-TEEEEEECSSS-------------CCEEEEETT-----SCSCEEEECSSCSCEEEE
T ss_pred             CceEEEEeCCCCCcceEEEeccc-CeEEEEeCCCC-------------CEEEEEeCC-----CCccEEEEECCCCceEEE
Confidence            54433333222233333333222 12222222111             111111111     1111111 2233567899


Q ss_pred             EEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          395 SWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       395 ~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      ++++.+  ++++-...+.|...|+..........   .......|++.  .+.++++-...+.|..+|..+++.+
T Consensus       252 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          252 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             EEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCce
Confidence            999866  44555667899999987544333332   23456677773  4567777777788999997666433

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.09  E-value=0.41  Score=47.65  Aligned_cols=77  Identities=13%  Similarity=0.110  Sum_probs=53.1

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccccc-----cccceeeec------ccCCEEEEEEcc---CCCEEEEEE
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS-----LYTGQEFLA------HEGSILTMKFSL---DGQYLASGG  303 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~-----~~~~~~l~~------H~~~I~~l~fsp---dg~~Lasgs  303 (493)
                      +..+..+|+|.+||..+. ..|.|-.+.........     ......+.-      ...+|..+.|+|   .+..|++-.
T Consensus        68 i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt  146 (452)
T 3pbp_A           68 TFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK  146 (452)
T ss_dssp             TCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred             eeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence            344889999999998754 57888887732211110     001112221      357899999999   466899999


Q ss_pred             CCCcEEEEecCC
Q 011126          304 EDGTVRVWKVIE  315 (493)
Q Consensus       304 ~Dg~V~iWdl~~  315 (493)
                      .|++||+||+..
T Consensus       147 sD~~Ir~yDl~~  158 (452)
T 3pbp_A          147 EDDTITMFDILN  158 (452)
T ss_dssp             TTSCEEEEETTC
T ss_pred             cCCEEEEEEccc
Confidence            999999999975

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.96  E-value=0.57  Score=45.74  Aligned_cols=97  Identities=14%  Similarity=0.128  Sum_probs=53.7

Q ss_pred             CCEeEEEEeCC----CeE-EEEeC---C----CeEEEEECCCC-------cEE-EEec--CCCcEEEEEEccCCCCEEEE
Q 011126          389 SEVLDLSWSKN----GFL-LSSSA---D----KTVRLWQVGID-------RCL-RVFS--HNNYVTSVAFNPVDDNYFIS  446 (493)
Q Consensus       389 ~~V~~l~~sp~----g~l-~sgs~---D----g~V~lWd~~~~-------~~~-~~~~--h~~~V~~v~fsp~d~~~l~s  446 (493)
                      .....|+++|+    +.| ++-+.   +    ..|..|+....       +.+ ..+.  .......|.|.| ++.++++
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt  151 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYIT  151 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEE
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEE
Confidence            45678888886    433 33321   2    56666766543       111 1122  112346799999 8987777


Q ss_pred             EeC-------------CCeEEEEeCCCC---------eEEEecCCCCCeEEEEEcc-CCCEEEE
Q 011126          447 GSI-------------DGKVRIWEVRRC---------QVVDYTDIREIVSAVCYCP-DGKVRQN  487 (493)
Q Consensus       447 gs~-------------Dg~V~IWdl~~~---------~~~~~~~~~~~I~sv~~sp-dG~~l~s  487 (493)
                      -+.             .|+|.-++....         ..+...++. ....++|+| +|+++++
T Consensus       152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~  214 (354)
T 3a9g_A          152 TGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVAT  214 (354)
T ss_dssp             CCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEE
T ss_pred             ECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEE
Confidence            442             256666665432         112223333 346799999 6776654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.89  E-value=0.099  Score=55.80  Aligned_cols=75  Identities=15%  Similarity=0.137  Sum_probs=50.4

Q ss_pred             EeEEEEeCCC-eEEEEe-CCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEe-CC-----CeEEEEeCCC
Q 011126          391 VLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGS-ID-----GKVRIWEVRR  460 (493)
Q Consensus       391 V~~l~~sp~g-~l~sgs-~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs-~D-----g~V~IWdl~~  460 (493)
                      ...+++..++ +++.|+ .+..+.+||..+.+....-.  ..-.-.++++.+ ++++++.|+ .+     ..+.+||..+
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCC
Confidence            3456777878 677776 45689999998775543322  111223455667 889999998 44     5699999998


Q ss_pred             CeEEEe
Q 011126          461 CQVVDY  466 (493)
Q Consensus       461 ~~~~~~  466 (493)
                      .+....
T Consensus       324 ~~W~~~  329 (656)
T 1k3i_A          324 KTWTSL  329 (656)
T ss_dssp             TEEEEE
T ss_pred             CcceeC
Confidence            875543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.88  E-value=1.1  Score=43.45  Aligned_cols=35  Identities=14%  Similarity=0.056  Sum_probs=26.0

Q ss_pred             ccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126          283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       283 H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~  317 (493)
                      .-..-+.|+|.|||.++++--..|.|++++...++
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~   64 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR   64 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence            34567899999999977765548889888754443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.83  E-value=0.66  Score=45.17  Aligned_cols=27  Identities=22%  Similarity=0.439  Sum_probs=21.0

Q ss_pred             CCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126          285 GSILTMKFSLDGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       285 ~~I~~l~fspdg~~Lasgs~Dg~V~iWd  312 (493)
                      ..-+.|+|.|+|++++ +..+|.|++++
T Consensus        31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~   57 (352)
T 2ism_A           31 EVPWALAFLPDGGMLI-AERPGRIRLFR   57 (352)
T ss_dssp             SCEEEEEECTTSCEEE-EETTTEEEEEE
T ss_pred             CCceEEEEcCCCeEEE-EeCCCeEEEEE
Confidence            3567999999998555 46678888887

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=94.54  E-value=3.4  Score=39.42  Aligned_cols=196  Identities=6%  Similarity=-0.104  Sum_probs=104.3

Q ss_pred             cceeccCC-CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCC-EEEEEECCCcEEEEecCCCe
Q 011126          240 SATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       240 ~~~fsp~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~V~iWdl~~~~  317 (493)
                      .+.|++.+ .+..+-...+.|..++........      ..+...-.....|++.+.+. ++++-...+.|.++++....
T Consensus        39 ~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~------~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~  112 (318)
T 3sov_A           39 AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL  112 (318)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC------EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EEEEEeCCCEEEEEECCCCcEEEEEccCCCceE------EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence            47888754 455555667889988876542110      01112223466788987544 44555567789999986543


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEEE
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSW  396 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~  396 (493)
                      ....+......+..+.+.+.. ..++..+..             ....+...+..     .+....+ ...-.....|++
T Consensus       113 ~~~l~~~~~~~P~giavdp~~-g~ly~td~~-------------~~~~I~r~~~d-----G~~~~~~~~~~l~~Pnglav  173 (318)
T 3sov_A          113 RKVLFWQELDQPRAIALDPSS-GFMYWTDWG-------------EVPKIERAGMD-----GSSRFIIINSEIYWPNGLTL  173 (318)
T ss_dssp             CEEEECSSCSSEEEEEEEGGG-TEEEEEECS-------------SSCEEEEEETT-----SCSCEEEECSSCSCEEEEEE
T ss_pred             EEEEEeCCCCCccEEEEeCCC-CEEEEEecC-------------CCCEEEEEEcC-----CCCeEEEEECCCCCccEEEE
Confidence            222222222223333333221 112221111             01112221111     0111111 122345689999


Q ss_pred             eCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          397 SKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       397 sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      ++++  ++++-+..+.|..+|+........+. .......+++..  +.++.+-...+.|..++..+++
T Consensus       174 d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          174 DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred             eccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCC
Confidence            9865  55566677899999987543322222 345567788753  4666676677899999987664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.30  E-value=1.5  Score=42.75  Aligned_cols=80  Identities=13%  Similarity=0.167  Sum_probs=51.2

Q ss_pred             CCeEEEEECCCC-c---EEEEec--CCCcEEEEEEccCCCCEEEEEeC-----------------CCeEEEEeCCCCeEE
Q 011126          408 DKTVRLWQVGID-R---CLRVFS--HNNYVTSVAFNPVDDNYFISGSI-----------------DGKVRIWEVRRCQVV  464 (493)
Q Consensus       408 Dg~V~lWd~~~~-~---~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~-----------------Dg~V~IWdl~~~~~~  464 (493)
                      +.+|.||++... .   .+..+.  .-...+.+.+.| +++++++...                 .|.|+-+|..  ++.
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~  214 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR  214 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE
Confidence            467778776543 2   222333  235688999999 8988887651                 2556666653  332


Q ss_pred             EecCCCCCeEEEEEccCCCEEEEeec
Q 011126          465 DYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       465 ~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      .....-...+.|+|+|||+.|+++.+
T Consensus       215 ~~~~~l~~pNGia~spDg~~lYvadt  240 (355)
T 3sre_A          215 VVAEGFDFANGINISPDGKYVYIAEL  240 (355)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             EeecCCcccCcceECCCCCEEEEEeC
Confidence            22333346799999999998887754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.19  E-value=0.7  Score=45.00  Aligned_cols=29  Identities=17%  Similarity=0.302  Sum_probs=22.0

Q ss_pred             CCEEEEEEccCCCEEEEEECCCcEEEEec
Q 011126          285 GSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       285 ~~I~~l~fspdg~~Lasgs~Dg~V~iWdl  313 (493)
                      ...+.|+|.|+|++|+.+...|.|++++.
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~   46 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQA   46 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence            35689999999983445567788888874

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=93.95  E-value=4.5  Score=38.54  Aligned_cols=198  Identities=7%  Similarity=-0.016  Sum_probs=100.3

Q ss_pred             CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE-EEEECCCcEEEEecCCCeeee-eeeccCCCCceEE
Q 011126          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLD-GFDVQDTDPSCLY  333 (493)
Q Consensus       256 dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~~~~~~~-~~~~~~~~~~~~~  333 (493)
                      ...|+..++........      .+......+..|.|.+.+..| .+-...+.|..+++....... .+......+..++
T Consensus        12 ~~~I~~i~l~~~~~~~~------~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla   85 (318)
T 3sov_A           12 RRDLRLVDATNGKENAT------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA   85 (318)
T ss_dssp             EEEEEEEETTCTTSCCE------EEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred             cCeEEEEECCCCceEEE------EEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence            46788888875432111      111122356789999865544 444567789889886653211 1111112222333


Q ss_pred             EeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEEEeCC-CeEEEEe--CCC
Q 011126          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKN-GFLLSSS--ADK  409 (493)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~-g~l~sgs--~Dg  409 (493)
                      +.... ..++..+.              ....+.+++...     .....+ .........|++.|. |.|+.+.  ..+
T Consensus        86 vd~~~-g~ly~~d~--------------~~~~I~~~~~dG-----~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~  145 (318)
T 3sov_A           86 CDWLG-EKLYWTDS--------------ETNRIEVSNLDG-----SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVP  145 (318)
T ss_dssp             EETTT-TEEEEEET--------------TTTEEEEEETTS-----CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSC
T ss_pred             EEcCC-CeEEEEEC--------------CCCEEEEEECCC-----CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCC
Confidence            32111 11111111              112222222211     111111 233456789999986 4444333  357


Q ss_pred             eEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEc
Q 011126          410 TVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYC  479 (493)
Q Consensus       410 ~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~s  479 (493)
                      .|...++.......... .-...+.|+|+|..++++++=+..+.|..+|+....... ..........+++.
T Consensus       146 ~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~  217 (318)
T 3sov_A          146 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF  217 (318)
T ss_dssp             EEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE
T ss_pred             EEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe
Confidence            88888876433322222 335678999999344444555567899999997543222 22233445666664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.77  E-value=5.2  Score=38.69  Aligned_cols=63  Identities=24%  Similarity=0.278  Sum_probs=44.2

Q ss_pred             cCCCcEEEEEEccC------CCCEEEEEeCCCeEEEEeCCCCeEEE---e-cCCCCCeEEEEEccCCCEEEEe
Q 011126          426 SHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRRCQVVD---Y-TDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       426 ~h~~~V~~v~fsp~------d~~~l~sgs~Dg~V~IWdl~~~~~~~---~-~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      .+...+..+.|...      ++.+|++.-..+.|...++..++.+.   + ......+..+++.|||.+.++.
T Consensus       268 ~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          268 KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            34456778888641      46777777778888888887765442   2 2334579999999999977653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=93.63  E-value=0.45  Score=51.15  Aligned_cols=74  Identities=4%  Similarity=0.007  Sum_probs=47.1

Q ss_pred             CCEeEEEEeCCC--eEEEEeCC-CeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          389 SEVLDLSWSKNG--FLLSSSAD-KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       389 ~~V~~l~~sp~g--~l~sgs~D-g~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      .....|++.|.+  ++++-... +.|.+.++........+. .-...+.|+|+|..++++++-...++|.++++....
T Consensus       496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~  573 (699)
T 1n7d_A          496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  573 (699)
T ss_dssp             CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC
T ss_pred             CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc
Confidence            446788999864  44443333 678877775433222222 234567899999456666666677899999997543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=93.43  E-value=1  Score=46.03  Aligned_cols=67  Identities=9%  Similarity=0.054  Sum_probs=46.1

Q ss_pred             eEEEEeCC-C-eEEEEeCCCeEEEEECC-------CCcE--------------EEEecCCCcEEEEEEccCCCCE-EEEE
Q 011126          392 LDLSWSKN-G-FLLSSSADKTVRLWQVG-------IDRC--------------LRVFSHNNYVTSVAFNPVDDNY-FISG  447 (493)
Q Consensus       392 ~~l~~sp~-g-~l~sgs~Dg~V~lWd~~-------~~~~--------------~~~~~h~~~V~~v~fsp~d~~~-l~sg  447 (493)
                      ..++.+|+ + ++++-..++.|..+|+.       ++..              +...........|+|+| ++++ +++=
T Consensus       250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD  328 (496)
T 3kya_A          250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFGV  328 (496)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEEE
T ss_pred             eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcC-CCCEEEEEe
Confidence            46788995 4 66677788899999987       4443              11222345568999999 8885 4555


Q ss_pred             eCCCeEEEEeCC
Q 011126          448 SIDGKVRIWEVR  459 (493)
Q Consensus       448 s~Dg~V~IWdl~  459 (493)
                      .....|+.++..
T Consensus       329 ~~~h~I~kid~d  340 (496)
T 3kya_A          329 INNHYFMRSDYD  340 (496)
T ss_dssp             TTTTEEEEEEEE
T ss_pred             CCCCEEEEEecC
Confidence            567889986543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.36  E-value=0.73  Score=41.67  Aligned_cols=94  Identities=7%  Similarity=-0.020  Sum_probs=57.0

Q ss_pred             EeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEE------ec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV------FS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       391 V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~------~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      ..++.|.|+|.|... .||.|.-++-.+......      +.  -=..+..|.|.| ++.+.+..  |+.++-+......
T Consensus        90 F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~  165 (236)
T 1tl2_A           90 FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSN  165 (236)
T ss_dssp             CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSST
T ss_pred             ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCC
Confidence            468889999955544 569888777543222111      11  114679999999 89887776  8886555444222


Q ss_pred             EEE-------ec-CCCCCeEEEEEccCCCEEEEe
Q 011126          463 VVD-------YT-DIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       463 ~~~-------~~-~~~~~I~sv~~spdG~~l~s~  488 (493)
                      -..       +. ..-....-+.|.|+|.+.++.
T Consensus       166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             CcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence            111       11 222234457799999887765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=93.25  E-value=1.4  Score=46.04  Aligned_cols=26  Identities=4%  Similarity=-0.043  Sum_probs=19.7

Q ss_pred             eEEEEeCCCeEEEEECCCCcEEEEec
Q 011126          401 FLLSSSADKTVRLWQVGIDRCLRVFS  426 (493)
Q Consensus       401 ~l~sgs~Dg~V~lWd~~~~~~~~~~~  426 (493)
                      .++.++.+|.++++|..+++.+..+.
T Consensus       338 ~v~~~~~~G~l~~lD~~tG~~lw~~~  363 (582)
T 1flg_A          338 ATAHADRNGFFYVVDRSNGKLQNAFP  363 (582)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCceEEEEECCCCCEecccc
Confidence            56677888888888888888776554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=92.67  E-value=9  Score=38.30  Aligned_cols=224  Identities=12%  Similarity=0.159  Sum_probs=119.7

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC-eee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH-ERL  319 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~-~~~  319 (493)
                      .-.+|..+.+|.-. ..++.|+|++...+..+       +. ....|.-=+|-.+ +.|+-.. +..|+-|++... .+.
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks-------~~-~~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~  139 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKA-------HT-MTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPV  139 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEE-------EE-CSSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCE
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcc-------ee-cCCCceEEEecCC-CeEEEEc-CCeeEEecccCCCCch
Confidence            45688888777764 68899999986553221       11 1245666677544 3555554 457999999643 333


Q ss_pred             eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (493)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (493)
                      +.+..+..-..         .+++.+..+.........--...++.+ .-....+....+.-+.+.||......+....+
T Consensus       140 kvFdR~~~L~~---------~QIInY~~d~~~kW~~l~GI~~~~~~v-~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~  209 (494)
T 1bpo_A          140 KMFDRHSSLAG---------CQIINYRTDAKQKWLLLTGISAQQNRV-VGAMQLYSVDRKVSQPIEGHAASFAQFKMEGN  209 (494)
T ss_dssp             EEEECCGGGTT---------CEEEEEEECTTSSEEEEEEEEEETTEE-EEEEEEEESTTCCEEEECCSEEEEEEEECTTC
T ss_pred             hheecchhccc---------ceEEEEEECCCCCeEEEEeecccCCcc-cceEEEeeccccccchheeeeeeeEEEecCCC
Confidence            33333322111         222222222221111111000011111 11122233334456677888766555444322


Q ss_pred             C----eEEEEeCC---CeEEEEECCCC---------cEEEEe-c---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          400 G----FLLSSSAD---KTVRLWQVGID---------RCLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       400 g----~l~sgs~D---g~V~lWd~~~~---------~~~~~~-~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      .    ++..+...   +.++|-++...         +.+..+ .   ..+...++..++ ...++..-+.-|.|++||+.
T Consensus       210 ~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDle  288 (494)
T 1bpo_A          210 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLE  288 (494)
T ss_dssp             SSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETT
T ss_pred             CCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecc
Confidence            1    34444432   78999998543         111111 1   356778999999 77888888999999999999


Q ss_pred             CCeEEEe-cCCCCCeEEEEEccCCCEEE
Q 011126          460 RCQVVDY-TDIREIVSAVCYCPDGKVRQ  486 (493)
Q Consensus       460 ~~~~~~~-~~~~~~I~sv~~spdG~~l~  486 (493)
                      ++..+.. .-..++|-.-+.+.....++
T Consensus       289 Tgt~i~~nrIs~~~iF~t~~~~~~~Gi~  316 (494)
T 1bpo_A          289 TGTCIYMNRISGETIFVTAPHEATAGII  316 (494)
T ss_dssp             TCCEEEEEECCSSCEEEEEEETTTTEEE
T ss_pred             cceeeeeecccCCceEEecccCCCCcEE
Confidence            9988742 33344454444444433333

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.64  E-value=0.11  Score=47.12  Aligned_cols=96  Identities=10%  Similarity=0.044  Sum_probs=61.0

Q ss_pred             CCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCc--------EEEEEEccCCCCEEEEEeCCCeEEEEeCCC
Q 011126          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY--------VTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (493)
Q Consensus       389 ~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~--------V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~  460 (493)
                      ..+.+|+|+|+|.|... .++.+.-.+..+.....-+.....        ..++.|.| ++.+.++  .||+|+-++..+
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence            36779999998855554 667665555544222111111112        47899999 8888877  569999888754


Q ss_pred             CeEEEec--------CCCCCeEEEEEccCCCEEEEe
Q 011126          461 CQVVDYT--------DIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       461 ~~~~~~~--------~~~~~I~sv~~spdG~~l~s~  488 (493)
                      ..-..|.        .-=..+..|.+.|+|.+.++.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            3211111        011357999999999988776

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=92.52  E-value=11  Score=39.56  Aligned_cols=198  Identities=7%  Similarity=-0.112  Sum_probs=101.4

Q ss_pred             ccceeccCCCeEEe-eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE-EECCCcEEEEecCCC
Q 011126          239 GSATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIEH  316 (493)
Q Consensus       239 ~~~~fsp~g~~las-gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~V~iWdl~~~  316 (493)
                      ..++|++.+..|.. -...++|..++........      ..+...-.....|++.+.+..|+. -...+.|.+.++...
T Consensus        43 ~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~------~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           43 AAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC-----CE------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE------EEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence            34788886665554 4456788888876442100      012222256889999996655544 456788999998654


Q ss_pred             eeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEE
Q 011126          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLS  395 (493)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~  395 (493)
                      .....+......+..+++.+... .++..++...             ..+.....     .......+ ...-.....|+
T Consensus       117 ~~~~l~~~~l~~P~~Iavdp~~g-~ly~tD~g~~-------------~~I~r~~~-----dG~~~~~l~~~~~~~P~Gla  177 (619)
T 3s94_A          117 LRKVLFWQELDQPRAIALDPSSG-FMYWTDWGEV-------------PKIERAGM-----DGSSRFIIINSEIYWPNGLT  177 (619)
T ss_dssp             SCEEEECSSCSCCCCEEEETTTT-EEEEEECSSS-------------CEEEEEET-----TSCSCEEEECSSCSSEEEEE
T ss_pred             CEEEEEeCCCCCCceEEEecCCC-eEEEeccCCC-------------CEEEEEEC-----CCCceEEEEeCCCCCCcEEE
Confidence            43222222333344444433321 2222222211             01111100     00111111 12334678999


Q ss_pred             EeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE
Q 011126          396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (493)
Q Consensus       396 ~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~  463 (493)
                      +.+.+  ++++-...+.|...|+.......... .......|++.. + .++++-...+.|...|..+++.
T Consensus       178 ld~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~-~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          178 LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-D-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             EETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESS-S-EEEEECTTTCSEEEEESSSCCC
T ss_pred             EEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeC-C-EEEEecCCCCEEEEEECCCCcc
Confidence            99865  55555667889999887543332222 222334677765 3 5555555678899999877653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=92.40  E-value=8.3  Score=37.30  Aligned_cols=195  Identities=11%  Similarity=0.154  Sum_probs=104.7

Q ss_pred             cCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC----CC---EEEEEE-C--CCcEEEEecC
Q 011126          245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----GQ---YLASGG-E--DGTVRVWKVI  314 (493)
Q Consensus       245 p~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~---~Lasgs-~--Dg~V~iWdl~  314 (493)
                      |...+++...+.+-+.|||+....  +.      .+..  +.++.+..-|+    |+   ++++.. .  +++|++|++.
T Consensus        38 p~~s~ii~t~k~~gL~Vydl~G~~--l~------~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD  107 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSLDGKM--LH------SYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID  107 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEETTSCE--EE------EECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred             CCccEEEEEcCCCCEEEEcCCCcE--EE------EccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence            344566666678899999995433  21      1221  45666666653    33   223333 3  5789999873


Q ss_pred             --CCeeeeeeec-------cCCCCceEEEeeCC-CCceeeeeccCccccceeeeecCCCceEEEcCC---Cceeecccce
Q 011126          315 --EHERLDGFDV-------QDTDPSCLYFTINH-LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP---KVFRLLEKPL  381 (493)
Q Consensus       315 --~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~---~~~~~~~~~~  381 (493)
                        ++. +..+..       ....+..+++-... ...+..+..             ..++.+..|..   .......+.+
T Consensus       108 p~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~-------------~k~G~~~q~~l~~~~~g~~~~~lV  173 (355)
T 3amr_A          108 GKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVT-------------GKEGEFEQYELKADKNGYISGKKV  173 (355)
T ss_dssp             TTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEE-------------CSSSEEEEEEEEECTTSCEEEEEE
T ss_pred             CCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEE-------------CCCCeEEEEEEEeCCCCcccceEE
Confidence              332 333311       10223323321111 121111111             11222222211   1111233456


Q ss_pred             EEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECC-----CCcEEEEec---CCCcEEEEEEccC-CCC-EEEEEe-C
Q 011126          382 HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG-----IDRCLRVFS---HNNYVTSVAFNPV-DDN-YFISGS-I  449 (493)
Q Consensus       382 ~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~-----~~~~~~~~~---h~~~V~~v~fsp~-d~~-~l~sgs-~  449 (493)
                      +++... +.+..+...+.. .|+.+-.+.-|..++..     +++.+..+.   ....+..|++-+. +++ ||++.+ .
T Consensus       174 R~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG  252 (355)
T 3amr_A          174 RAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG  252 (355)
T ss_dssp             EEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             EEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence            666653 467888888765 99999999777777754     345665554   2246888888431 444 666666 6


Q ss_pred             CCeEEEEeCC-CCeEE
Q 011126          450 DGKVRIWEVR-RCQVV  464 (493)
Q Consensus       450 Dg~V~IWdl~-~~~~~  464 (493)
                      +.++.|||.. +.+.+
T Consensus       253 ~~s~~Vydr~~~~~~v  268 (355)
T 3amr_A          253 NSSYAIYDRQGKNKYV  268 (355)
T ss_dssp             GTEEEEEESSTTCCEE
T ss_pred             CCEEEEEECCCCCcEE
Confidence            7899999997 55554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=92.32  E-value=18  Score=41.01  Aligned_cols=100  Identities=9%  Similarity=0.076  Sum_probs=62.1

Q ss_pred             CEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEE--EEecCCCcEEEEEEccCC-----CCEEEEEeC-CCeEEEEeCCCC
Q 011126          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCL--RVFSHNNYVTSVAFNPVD-----DNYFISGSI-DGKVRIWEVRRC  461 (493)
Q Consensus       390 ~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~--~~~~h~~~V~~v~fsp~d-----~~~l~sgs~-Dg~V~IWdl~~~  461 (493)
                      .|...+.+.. +++.++ .+.+.++.+..+...  ........|.|+++.|..     .++++.|.. |++|+|+++.+.
T Consensus       515 ~I~~As~n~~-~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l  592 (1158)
T 3ei3_A          515 NISVASCNSS-QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF  592 (1158)
T ss_dssp             CCCEEEECSS-EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEEeCCC-EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence            4666555433 444444 577888877655332  222356789999998732     479999997 999999999987


Q ss_pred             eEEEecCC--CCCeEEEEEcc--CCCEEEEeecC
Q 011126          462 QVVDYTDI--REIVSAVCYCP--DGKVRQNSACN  491 (493)
Q Consensus       462 ~~~~~~~~--~~~I~sv~~sp--dG~~l~s~s~d  491 (493)
                      +.+.....  ...+.++++..  ...+|.+|-.|
T Consensus       593 ~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~d  626 (1158)
T 3ei3_A          593 ELLHKEMLGGEIIPRSILMTTFESSHYLLCALGD  626 (1158)
T ss_dssp             CEEEEEECCSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred             CeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCC
Confidence            76643222  23555555542  22355555444

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=92.16  E-value=13  Score=39.00  Aligned_cols=101  Identities=7%  Similarity=-0.049  Sum_probs=66.6

Q ss_pred             CCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeCCCCeEE
Q 011126          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVV  464 (493)
Q Consensus       389 ~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~~~~~~  464 (493)
                      .....|++.+.+  ++++-...+.|.+.++........+ ..-.....|++.|..+.++++-- ..+.|...++......
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~  163 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF  163 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence            356789998854  5666677889999998765443333 34456778999994454555532 2467888887754333


Q ss_pred             Ee-cCCCCCeEEEEEccCCCEEEEee
Q 011126          465 DY-TDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       465 ~~-~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .+ ...-...+.|+++|+++.|+.+-
T Consensus       164 ~l~~~~~~~P~Glald~~~~~LY~aD  189 (619)
T 3s94_A          164 IIINSEIYWPNGLTLDYEEQKLYWAD  189 (619)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCCcEEEEEccCCEEEEEe
Confidence            22 22345679999999877776653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=91.64  E-value=15  Score=38.61  Aligned_cols=205  Identities=6%  Similarity=-0.034  Sum_probs=106.9

Q ss_pred             eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE-EECCCcEEEEecCCCeeeeeeeccCC
Q 011126          249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIEHERLDGFDVQDT  327 (493)
Q Consensus       249 ~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~V~iWdl~~~~~~~~~~~~~~  327 (493)
                      +|+.+ ....|+..++........ + .   + ..-..+..|+|++.+..|+- -..++.|+.+++........+.....
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~-~-~---~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~   80 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVA-I-P---L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD   80 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEE-C-C---C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred             EEEEE-eCCcEEEEECCCCCcceE-E-E---c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC
Confidence            34443 567788888875432110 0 0   1 12346789999996666554 44678898888865433222322222


Q ss_pred             CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEEEeCC-CeE-EE
Q 011126          328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKN-GFL-LS  404 (493)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~-g~l-~s  404 (493)
                      .+..+++.... ..++..+..              ...+.+.+..     .+....+ .........|++.|. |.| .+
T Consensus        81 ~P~GlAvD~~~-~~LY~tD~~--------------~~~I~v~~~d-----G~~~~~l~~~~l~~P~~iavdp~~G~lY~t  140 (628)
T 4a0p_A           81 YPEGMAVDWLG-KNLYWADTG--------------TNRIEVSKLD-----GQHRQVLVWKDLDSPRALALDPAEGFMYWT  140 (628)
T ss_dssp             CCCEEEEETTT-TEEEEEETT--------------TTEEEEEETT-----STTCEEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred             CcceEEEEeCC-CEEEEEECC--------------CCEEEEEecC-----CCcEEEEEeCCCCCcccEEEccCCCeEEEe
Confidence            33333332211 112222211              1222222211     0111111 133455789999985 544 44


Q ss_pred             E-eCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEcc
Q 011126          405 S-SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP  480 (493)
Q Consensus       405 g-s~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~sp  480 (493)
                      - +..+.|...++........+......+.|++++..++++++=...+.|...|+.......+........+|++..
T Consensus       141 D~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~  217 (628)
T 4a0p_A          141 EWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ  217 (628)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET
T ss_pred             CCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC
Confidence            3 235678888877655444445556789999999334444454567899999997643322222223445666654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.16  E-value=10  Score=40.40  Aligned_cols=98  Identities=7%  Similarity=0.097  Sum_probs=53.9

Q ss_pred             EEEEeCC-C-eEEEEeC--C-----CeEEEEECCCCc------EEEEec----CCCcEEEEEEccCCCCEEEEEeCC---
Q 011126          393 DLSWSKN-G-FLLSSSA--D-----KTVRLWQVGIDR------CLRVFS----HNNYVTSVAFNPVDDNYFISGSID---  450 (493)
Q Consensus       393 ~l~~sp~-g-~l~sgs~--D-----g~V~lWd~~~~~------~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~D---  450 (493)
                      .+.+..+ + +++.|+.  +     ..+.+||+.+..      -.....    ......++.+.  ++.+++.|+.+   
T Consensus       543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~~iyv~GG~~~~~  620 (695)
T 2zwa_A          543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT--PRKLLIVGGTSPSG  620 (695)
T ss_dssp             EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE--TTEEEEECCBCSSC
T ss_pred             EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC--CCEEEEECCccCCC
Confidence            3555655 5 6666654  2     458899998776      211111    11122333332  37888888753   


Q ss_pred             -----CeEEEEeCCCCeEEEecCCCCC----------eEEEEEccCCCEEEEeecCCC
Q 011126          451 -----GKVRIWEVRRCQVVDYTDIREI----------VSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       451 -----g~V~IWdl~~~~~~~~~~~~~~----------I~sv~~spdG~~l~s~s~d~~  493 (493)
                           ..|.+||+.+.+..... ....          -.+++..++|++++.||...|
T Consensus       621 ~~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~c  677 (695)
T 2zwa_A          621 LFDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATC  677 (695)
T ss_dssp             CCCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC---CEEEECCEEEC
T ss_pred             CCCCCCeEEEEECCCCeEEEee-ccccccCCCCccceeeeEEEeCCCEEEEEeCCccC
Confidence                 45999999988765321 1111          133455567789888886543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=90.56  E-value=19  Score=37.83  Aligned_cols=101  Identities=4%  Similarity=-0.028  Sum_probs=68.6

Q ss_pred             CCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeCCCCeEE
Q 011126          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       389 ~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl~~~~~~  464 (493)
                      .....|++.+.+  ++++-...+.|.+.++........+ ..-.....|++.|..+.++.+- +..++|...++......
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~  159 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT  159 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence            356788888754  5566667789999998765433333 3445678999999445444443 23578888888766544


Q ss_pred             EecCCCCCeEEEEEccCCCEEEEee
Q 011126          465 DYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       465 ~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .+...-...+.|+++++++.|+.+-
T Consensus       160 ~l~~~~~~P~GlalD~~~~~LY~aD  184 (628)
T 4a0p_A          160 TLVPNVGRANGLTIDYAKRRLYWTD  184 (628)
T ss_dssp             EEECSCSSEEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCcceEEEccccCEEEEEE
Confidence            4334456789999999887776654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=90.35  E-value=28  Score=39.47  Aligned_cols=218  Identities=12%  Similarity=0.079  Sum_probs=102.4

Q ss_pred             CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC------CCEEEEEEC-CCcEEEEecCCCeeee
Q 011126          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------GQYLASGGE-DGTVRVWKVIEHERLD  320 (493)
Q Consensus       248 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~Lasgs~-Dg~V~iWdl~~~~~~~  320 (493)
                      .+++.+. .+.+.++.+....  +...   .. ..-...|.|+++.|.      +.++|.|.. |++|+|+++.+.+.+.
T Consensus       524 ~~vvva~-g~~l~~fel~~~~--L~~~---~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~  596 (1158)
T 3ei3_A          524 SQVVVAV-GRALYYLQIHPQE--LRQI---SH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH  596 (1158)
T ss_dssp             SEEEEEE-TTEEEEEEEETTE--EEEE---EE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             CEEEEEE-CCEEEEEEeeCCc--eeee---cc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence            4555553 4666666654321  1111   11 112457999999863      469999996 9999999998766554


Q ss_pred             eeeccCC-CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEE--cCCCceeecccceEEEecCCCCEeEEEEe
Q 011126          321 GFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVV--LPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (493)
Q Consensus       321 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (493)
                      ....... .+..+.+..-...              .....+-.++.++.  ++.....+.... ..+.| ..++.-..+.
T Consensus       597 ~~~L~~~~~p~si~l~~~~~~--------------~~L~igl~dG~l~~~~~d~~tg~l~d~r-~~~LG-~~pv~L~~~~  660 (1158)
T 3ei3_A          597 KEMLGGEIIPRSILMTTFESS--------------HYLLCALGDGALFYFGLNIETGLLSDRK-KVTLG-TQPTVLRTFR  660 (1158)
T ss_dssp             EEECCSSCCEEEEEEEEETTE--------------EEEEEEETTSEEEEEEECTTTCCEEEEE-EEECC-SSCCEEEEEE
T ss_pred             EEECCCCCCCcEEEEEEeCCC--------------cEEEEEeCCCeEEEEEEcCCCCccccce-eEEcC-CCceEEEEEe
Confidence            4433221 1222222111111              11122222322222  122111111111 11222 3344433343


Q ss_pred             CCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCC-CCEEEEEeCCCeEEEEeCCCCe--EEEecCCCCC
Q 011126          398 KNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVD-DNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREI  472 (493)
Q Consensus       398 p~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d-~~~l~sgs~Dg~V~IWdl~~~~--~~~~~~~~~~  472 (493)
                      ..|  .+++++ +....+|--+..-....+....--....|+... .+-++.. .++.++|..+.+-+  .+........
T Consensus       661 ~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL~~T  738 (1158)
T 3ei3_A          661 SLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPLYES  738 (1158)
T ss_dssp             SSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEECSSE
T ss_pred             eCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEeCCCC
Confidence            333  333333 333333433322111212222222334454311 2344443 35569998886432  2345566788


Q ss_pred             eEEEEEccCCCEEEEeec
Q 011126          473 VSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       473 I~sv~~spdG~~l~s~s~  490 (493)
                      +..++|+|+.+.++++..
T Consensus       739 prri~y~~~~~~~~v~~~  756 (1158)
T 3ei3_A          739 PRKICYQEVSQCFGVLSS  756 (1158)
T ss_dssp             EEEEEEEGGGTEEEEEEE
T ss_pred             ceEEEEcCCCCEEEEEEE
Confidence            999999999887766553

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.25  E-value=14  Score=35.73  Aligned_cols=247  Identities=14%  Similarity=0.125  Sum_probs=117.5

Q ss_pred             ecccccceeccCCCeEEeeecCCeEEEEECCCcccc-ccccccceeeecccCCEEEEEEccC---CCEEEEE-E--CCCc
Q 011126          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE-LSSLYTGQEFLAHEGSILTMKFSLD---GQYLASG-G--EDGT  307 (493)
Q Consensus       235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~-~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasg-s--~Dg~  307 (493)
                      ......++|.|+|.++++-...|+|++++....... +..+.  ..+....+....|+|+|+   ..+|+.. +  .++.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~--~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP--GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT--TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC--ceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            344456999999998777766899999875433221 11110  112234567899999995   3344332 2  3444


Q ss_pred             EEEEecCCCe----------ee-eeeec-cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCcee
Q 011126          308 VRVWKVIEHE----------RL-DGFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR  375 (493)
Q Consensus       308 V~iWdl~~~~----------~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  375 (493)
                      |.-|.+..+.          .+ ..+.. ..+....+.|.+++  .++...-+......... .....+.++.++....-
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG--~Lyvt~Gd~~~~~~~qd-~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK--MLYAGTGESGDTGLSQD-RKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS--CEEEECBCTTCGGGTTC-TTCSTTCEEEECTTSSB
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC--CEEEEECCCCCCccccC-CCCCCCEEEEEeCCCCc
Confidence            5555554311          11 01111 11112233333332  22221111110000000 00122334333332110


Q ss_pred             ecccc----eEEEecCCCCEeEEEEeCCCeEEEEe--CCCeEEEEECCCCc------------------EEEEecCC-Cc
Q 011126          376 LLEKP----LHEFQGHSSEVLDLSWSKNGFLLSSS--ADKTVRLWQVGIDR------------------CLRVFSHN-NY  430 (493)
Q Consensus       376 ~~~~~----~~~~~~h~~~V~~l~~sp~g~l~sgs--~Dg~V~lWd~~~~~------------------~~~~~~h~-~~  430 (493)
                      ....|    ..--.+|.+ ...++|+|+|.|.++-  .|+.-.|--+..+.                  ++..+.+. ..
T Consensus       186 p~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a  264 (347)
T 3das_A          186 APGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS  264 (347)
T ss_dssp             CTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred             cCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence            00001    111235543 5689999988444432  33323333322221                  12333332 35


Q ss_pred             EEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE----EE-ecCCCCCeEEEEEccCCCEEEEee
Q 011126          431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV----VD-YTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       431 V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~----~~-~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      ...++|.  ++.+|+..-..+.|....+.....    .. +.+....+..|...|||.++++..
T Consensus       265 p~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          265 PSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            6778886  466666665666776666665432    12 334457899999999998776643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.86  E-value=12  Score=34.59  Aligned_cols=65  Identities=15%  Similarity=0.192  Sum_probs=40.1

Q ss_pred             CC-eEEEEeCC-----CeEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCCC-----eEEEEeCCCCeEE
Q 011126          399 NG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVV  464 (493)
Q Consensus       399 ~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~Dg-----~V~IWdl~~~~~~  464 (493)
                      ++ +++.|+.+     ..+.+||+.+.+-...-.  .. .....+.+   ++.+++.|+.++     .|.+||+.+.+..
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV---NGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE---CCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence            44 66666654     468899998775543322  11 11122222   677888888664     4899999988766


Q ss_pred             Ee
Q 011126          465 DY  466 (493)
Q Consensus       465 ~~  466 (493)
                      ..
T Consensus       281 ~~  282 (302)
T 2xn4_A          281 VV  282 (302)
T ss_dssp             EC
T ss_pred             EC
Confidence            44

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=86.93  E-value=9.2  Score=38.43  Aligned_cols=101  Identities=12%  Similarity=0.148  Sum_probs=60.3

Q ss_pred             CCCEeEEEEeCCCeEEEEeCC-CeEEEEECCCCcEE--EEec-------CCCcEEEEEEccCC---CCEEEEEe-C----
Q 011126          388 SSEVLDLSWSKNGFLLSSSAD-KTVRLWQVGIDRCL--RVFS-------HNNYVTSVAFNPVD---DNYFISGS-I----  449 (493)
Q Consensus       388 ~~~V~~l~~sp~g~l~sgs~D-g~V~lWd~~~~~~~--~~~~-------h~~~V~~v~fsp~d---~~~l~sgs-~----  449 (493)
                      -.....|+|.|+|.|+.+... +.|++++...+...  ..+.       .......|+|+| +   +.+|.... .    
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEeccccC
Confidence            446779999999954445555 47888886555432  2222       135677999999 4   44444433 2    


Q ss_pred             --------CCeEEEEeCCCC-------eEE-E-ecC-CCCCeEEEEEccCCCEEEEee
Q 011126          450 --------DGKVRIWEVRRC-------QVV-D-YTD-IREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       450 --------Dg~V~IWdl~~~-------~~~-~-~~~-~~~~I~sv~~spdG~~l~s~s  489 (493)
                              ...|.-|++...       +.+ . +.. .......|.|.|||++.++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                    235655655321       112 1 221 123478999999998776654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=86.41  E-value=20  Score=33.09  Aligned_cols=63  Identities=10%  Similarity=0.187  Sum_probs=38.4

Q ss_pred             CC-eEEEEeCC-----CeEEEEECCCCcEEEEec--C-CCcEEEEEEccCCCCEEEEEeCC-----CeEEEEeCCCCeEE
Q 011126          399 NG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS--H-NNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVV  464 (493)
Q Consensus       399 ~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~--h-~~~V~~v~fsp~d~~~l~sgs~D-----g~V~IWdl~~~~~~  464 (493)
                      ++ +++.|+.+     ..|.+||+.+.+-...-.  . .....++.+   ++.+++.|+.+     ..|.+||+.+.+..
T Consensus       200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            44 55555543     468899998765433221  1 112233333   56788888865     56899999987654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=86.04  E-value=2.3  Score=43.78  Aligned_cols=100  Identities=14%  Similarity=0.123  Sum_probs=71.1

Q ss_pred             CCEeEEEEeCCC--eEEEEeCCCeEEEEECCCC------c-------EEEEecCCCcEEEEEEccCCCCEEEEEeCCCeE
Q 011126          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGID------R-------CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKV  453 (493)
Q Consensus       389 ~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~------~-------~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V  453 (493)
                      .....+..+|+|  .++++-.+.+|.++|+..-      +       ........-.....+|.+ +|+...|.-.|..|
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqv  401 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceE
Confidence            344678899999  5556667899999998741      1       123334556678899999 88777777799999


Q ss_pred             EEEeCCCC----------eEEEecCCCCCeEEEEE------ccCCCEEEEee
Q 011126          454 RIWEVRRC----------QVVDYTDIREIVSAVCY------CPDGKVRQNSA  489 (493)
Q Consensus       454 ~IWdl~~~----------~~~~~~~~~~~I~sv~~------spdG~~l~s~s  489 (493)
                      .-|++...          .++...+....+-.+.-      .|||++|++..
T Consensus       402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            99999753          45554444455555544      68999998875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=85.77  E-value=21  Score=41.18  Aligned_cols=202  Identities=12%  Similarity=0.194  Sum_probs=102.1

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC-eee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH-ERL  319 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~-~~~  319 (493)
                      .-.+|..+.+|.-. ..++.|+|+....+-.+.       . ...+|.-=+|-.+. .|+..+ +..|.-|++... .+.
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~-------~-~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~  139 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-------T-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPV  139 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhccc-------c-cCCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccH
Confidence            44677777777754 688999999765532221       1 13456666775443 454444 347999999642 222


Q ss_pred             eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (493)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (493)
                      +.+..+..-.         ..+++.+..+..........-...++.+ .-....+....+..+.+.||.+....+....+
T Consensus       140 k~fdR~~~L~---------~~QIinY~~d~~~kW~~l~gi~~~~~~v-~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~  209 (1630)
T 1xi4_A          140 KMFDRHSSLA---------GCQIINYRTDAKQKWLLLTGISAQQNRV-VGAMQLYSVDRKVSQPIEGHAASFAQFKMEGN  209 (1630)
T ss_pred             HHHhcchhcc---------cCeeEEeeeCCCCCeEEEEeeccCCCcc-cceeeeeecccccchhhhHhHhhhheeccCCC
Confidence            2222221111         1122222222221111110001111100 11111222223334456677665544443211


Q ss_pred             --C--eEEEEeC---CCeEEEEECCCC---c------EEEEe-c---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          400 --G--FLLSSSA---DKTVRLWQVGID---R------CLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       400 --g--~l~sgs~---Dg~V~lWd~~~~---~------~~~~~-~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                        .  ++..+..   .+.++|-++...   .      .+..+ .   ..+...++..++ ...++..-+.-|.|+++|+.
T Consensus       210 ~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~  288 (1630)
T 1xi4_A          210 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLE  288 (1630)
T ss_pred             CCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEEecc
Confidence              1  2222221   268888888543   1      11111 1   345667889998 77778888899999999999


Q ss_pred             CCeEE
Q 011126          460 RCQVV  464 (493)
Q Consensus       460 ~~~~~  464 (493)
                      ++..+
T Consensus       289 t~~~i  293 (1630)
T 1xi4_A          289 TGTCI  293 (1630)
T ss_pred             cchhh
Confidence            99766

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=85.46  E-value=24  Score=33.10  Aligned_cols=60  Identities=7%  Similarity=0.062  Sum_probs=32.3

Q ss_pred             eeccCCCeEEeeecC--------------CeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE--CC
Q 011126          242 TLKPGDHELTLGQRM--------------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG--ED  305 (493)
Q Consensus       242 ~fsp~g~~lasgs~d--------------g~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs--~D  305 (493)
                      -++++|.+|+-....              ..|+..++.......        +.  ...  ...|++++++|+-..  .+
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------l~--~~~--~~~~s~~g~~Iy~~~~~~~  126 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------LD--PDP--CIYASLIGNYIYYLHYDTQ  126 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------EE--CSC--EEEEEEETTEEEEEEESSS
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------ee--cCC--ccEEEEeCCEEEEEeecCC
Confidence            457788877766543              345555655443211        11  111  236778888887665  34


Q ss_pred             CcEEEEec
Q 011126          306 GTVRVWKV  313 (493)
Q Consensus       306 g~V~iWdl  313 (493)
                      +.-.||.+
T Consensus       127 ~~~~Iy~~  134 (302)
T 3s25_A          127 TATSLYRI  134 (302)
T ss_dssp             SCEEEEEE
T ss_pred             CCceEEEE
Confidence            44444443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=84.36  E-value=25  Score=32.32  Aligned_cols=88  Identities=15%  Similarity=0.246  Sum_probs=51.3

Q ss_pred             CC-eEEEEeCC-----CeEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCC-----CeEEEEeCCCCeEE
Q 011126          399 NG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVV  464 (493)
Q Consensus       399 ~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~D-----g~V~IWdl~~~~~~  464 (493)
                      ++ +++.|+.+     ..+.+||+.+.+-...-.  .. ....++.+   ++.+++.|+.+     ..|.+||+.+.+..
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  235 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT  235 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence            45 55666544     468899988775544322  11 11222332   56788888765     46999999988766


Q ss_pred             EecCCCC---CeEEEEEccCCCEEEEeecC
Q 011126          465 DYTDIRE---IVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       465 ~~~~~~~---~I~sv~~spdG~~l~s~s~d  491 (493)
                      .......   ....+.  -++++++.|+.+
T Consensus       236 ~~~~~p~~r~~~~~~~--~~~~i~v~GG~~  263 (301)
T 2vpj_A          236 TVTSMTTPRCYVGATV--LRGRLYAIAGYD  263 (301)
T ss_dssp             EECCCSSCCBSCEEEE--ETTEEEEECCBC
T ss_pred             ECCCCCCcccceeEEE--ECCEEEEEcCcC
Confidence            5432221   222222  377788887754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=84.21  E-value=25  Score=32.27  Aligned_cols=64  Identities=14%  Similarity=0.186  Sum_probs=39.4

Q ss_pred             CC-eEEEEeCC-----CeEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCC-----CeEEEEeCCCCeEE
Q 011126          399 NG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVV  464 (493)
Q Consensus       399 ~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~D-----g~V~IWdl~~~~~~  464 (493)
                      ++ +++.|+.+     ..|.+||+.+.+-...-.  .. ....++.+   ++.+++.|+.+     ..|.+||+.+.+..
T Consensus       206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL---RGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE---CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            44 66666653     568999998876544322  11 11222333   56788888766     46889999887654


Q ss_pred             E
Q 011126          465 D  465 (493)
Q Consensus       465 ~  465 (493)
                      .
T Consensus       283 ~  283 (301)
T 2vpj_A          283 V  283 (301)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=80.89  E-value=35  Score=31.55  Aligned_cols=64  Identities=13%  Similarity=0.211  Sum_probs=38.9

Q ss_pred             CC-eEEEEeCC-----CeEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCC-----CeEEEEeCCCCeEE
Q 011126          399 NG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVV  464 (493)
Q Consensus       399 ~g-~l~sgs~D-----g~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~D-----g~V~IWdl~~~~~~  464 (493)
                      ++ +++.|+.+     ..+.+||+.+.+-...-.  .. .....+.+   ++.+++.|+.+     ..|.+||+.+.+..
T Consensus       215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            45 66666554     568999998775443322  11 11222222   57788888754     45889999887655


Q ss_pred             E
Q 011126          465 D  465 (493)
Q Consensus       465 ~  465 (493)
                      .
T Consensus       292 ~  292 (308)
T 1zgk_A          292 E  292 (308)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=80.80  E-value=31  Score=32.64  Aligned_cols=53  Identities=13%  Similarity=0.196  Sum_probs=29.3

Q ss_pred             eEEEEECCCCcEEEE--ecC-CCcEEEEEEccCCCCEEEEEeCCC------eEEEEeCCCCeEEE
Q 011126          410 TVRLWQVGIDRCLRV--FSH-NNYVTSVAFNPVDDNYFISGSIDG------KVRIWEVRRCQVVD  465 (493)
Q Consensus       410 ~V~lWd~~~~~~~~~--~~h-~~~V~~v~fsp~d~~~l~sgs~Dg------~V~IWdl~~~~~~~  465 (493)
                      .+.+||+.+.+-...  +.. .....++.+   ++.+++.|+.++      .|.++++++++.+.
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSLPW---NNSLLIIGGETAGGKAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEEEE---TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeEEe---CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence            577899886653332  221 111223333   678888888653      46677898887764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=80.71  E-value=36  Score=31.56  Aligned_cols=65  Identities=5%  Similarity=0.183  Sum_probs=38.5

Q ss_pred             CC-eEEEEeCCC-----eEEEEECCCCcEEEEec--CC-CcEEEEEEccCCCCEEEEEeCCC--------------eEEE
Q 011126          399 NG-FLLSSSADK-----TVRLWQVGIDRCLRVFS--HN-NYVTSVAFNPVDDNYFISGSIDG--------------KVRI  455 (493)
Q Consensus       399 ~g-~l~sgs~Dg-----~V~lWd~~~~~~~~~~~--h~-~~V~~v~fsp~d~~~l~sgs~Dg--------------~V~I  455 (493)
                      ++ +++.|+.++     .+.+||+.+.+-...-.  .. .....+.+   ++.+++.|+.++              .|.+
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~  272 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL---VGTLYAIGGFATLETESGELVPTELNDIWR  272 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE---CCEEEEECCccccCcCCccccccccCcEEE
Confidence            44 666666543     58889998775443322  11 11222333   567888887642              4789


Q ss_pred             EeCCCCeEEEe
Q 011126          456 WEVRRCQVVDY  466 (493)
Q Consensus       456 Wdl~~~~~~~~  466 (493)
                      ||+.+.+....
T Consensus       273 yd~~~~~W~~~  283 (315)
T 4asc_A          273 YNEEEKKWEGV  283 (315)
T ss_dssp             EETTTTEEEEE
T ss_pred             ecCCCChhhhh
Confidence            99988865543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	493
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-23
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.004
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.004
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	9e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.0 bits (245), Expect = 1e-23
 Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 11/193 (5%)

Query: 271 LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS 330
           + + Y  + F  H   +  ++ + DG  +AS   D TVRVW V   E             
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRK----SSDLTCVVLPPKVFRLLEKPLHEFQG 386
           C+ +        I      E     K        S D T  +            L    G
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMTLVG 245

Query: 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYF 444
           H + V  + +   G F+LS + DKT+R+W     RC++  + H ++VTS+ F+     Y 
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYV 304

Query: 445 ISGSIDGKVRIWE 457
           ++GS+D  V++WE
Sbjct: 305 VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (174), Expect = 2e-14
 Identities = 40/255 (15%), Positives = 73/255 (28%), Gaps = 52/255 (20%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
                H   +  + F      + S  ED T++VW     +              + F  +
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 338 HLSQLIPIDVDKEKI--------------------------DKTKSLRKSSDLTCVVLPP 371
                        K+                          +    +  S D T  +   
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN 429
           +        +  F GH   V  +  +++G  + S S D+TVR+W V    C      H +
Sbjct: 131 QTG----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 186

Query: 430 YVTSVAFNP-------------------VDDNYFISGSIDGKVRIWEVRRCQVV-DYTDI 469
            V  +++ P                       + +SGS D  +++W+V     +      
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 470 REIVSAVCYCPDGKV 484
              V  V +   GK 
Sbjct: 247 DNWVRGVLFHSGGKF 261

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 8e-10
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 2/107 (1%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF 436
              +   GH S V  + +      ++S+S D T+++W        R    H + V  ++F
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483
           +          +              +         VS+V   P+G 
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 114

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.6 bits (197), Expect = 4e-17
 Identities = 43/223 (19%), Positives = 72/223 (32%), Gaps = 57/223 (25%)

Query: 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304
                +  G   R VRV   +            +    H+ S+ ++ F+ DGQ + SG  
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274

Query: 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364
           D +V++W +            ++                                     
Sbjct: 275 DRSVKLWNLQNANNKSDSKTPNSG------------------------------------ 298

Query: 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR 423
                              + GH   VL ++ ++N  ++LS S D+ V  W       L 
Sbjct: 299 --------------TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344

Query: 424 VFS-HNNYVTSVAFNPV-----DDNYFISGSIDGKVRIWEVRR 460
           +   H N V SVA         + N F +GS D K RIW+ ++
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.3 bits (178), Expect = 1e-14
 Identities = 34/176 (19%), Positives = 71/176 (40%), Gaps = 20/176 (11%)

Query: 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396
           NH   + P  +D +      +L+K ++   ++  P + R ++  LH+   H+S V  + +
Sbjct: 11  NHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKF 70

Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFS-------------------HNNYVTSVAFN 437
           S +G  L++  +KT ++++V     +   S                    + Y+ SV F+
Sbjct: 71  SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 130

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC 493
           P D  +  +G+ D  +RIW++   ++V      E             +  S     
Sbjct: 131 P-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 185

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 4e-12
 Identities = 46/273 (16%), Positives = 89/273 (32%), Gaps = 45/273 (16%)

Query: 254 QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
                V        + +           + +  I ++ FS DG++LA+G ED  +R+W +
Sbjct: 91  SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 150

Query: 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK------------- 360
              + +      + D   L +  +    +        +I   ++ +              
Sbjct: 151 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV 210

Query: 361 -------------SSDLTCVVLPP---KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403
                        S D    V       +   L+       GH   V  + ++++G  ++
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 404 SSSADKTVRLWQVGIDRCLRVFS-------------HNNYVTSVAFNPVDDNYFISGSID 450
           S S D++V+LW +                       H ++V SVA    +D Y +SGS D
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKD 329

Query: 451 GKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDG 482
             V  W+ +    +      R  V +V      
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 362

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 9e-11
 Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 16/217 (7%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE---RLDGFDVQDTDPSCLYF 334
            + L H   +  +KFS DG+YLA+G  + T +V++V +     RL      + DP  L  
Sbjct: 56  HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114

Query: 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394
           + +  S L    V      K      ++     ++        +  +             
Sbjct: 115 SSSPSSDLYIRSVCFSPDGK----FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD 170

Query: 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
            +     L+S S D+TVR+W +   +C    S  + VT+VA +P D  Y  +GS+D  VR
Sbjct: 171 YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 230

Query: 455 IWEVRRCQVVD--------YTDIREIVSAVCYCPDGK 483
           +W+     +V+         T  ++ V +V +  DG+
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 267

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 2e-15
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 382 HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVD 440
           ++   H S VL L ++  G + +S+  D  +  W+      +     ++ V S   +  D
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV-D 317

Query: 441 DNYFISGSIDGKVRIWEV 458
           D Y ++GS D K  ++EV
Sbjct: 318 DKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 22/143 (15%), Positives = 39/143 (27%), Gaps = 11/143 (7%)

Query: 361 SSDLTCVVLPPKVFRLLEKPLHEFQ----GHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416
              +  V  PP        P H  Q     H   V  ++ S     + +     V++W +
Sbjct: 20  DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDI 79

Query: 417 GIDRC------LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR 470
                      L   + +NY+ S    P D    I G     + IW++         ++ 
Sbjct: 80  SHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138

Query: 471 EIVSAVCYCPDGKVRQNSACNFC 493
               A          +       
Sbjct: 139 SSAPACYALAISPDSKVCFSCCS 161

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 35/230 (15%), Positives = 69/230 (30%), Gaps = 25/230 (10%)

Query: 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINH 338
           + L  +  I + K   DG  L  GGE  T+ +W +         ++  + P+C    I+ 
Sbjct: 92  DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151

Query: 339 LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP-----------------------PKVFR 375
            S++         I       ++                                 + + 
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211

Query: 376 LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434
           L E    +    +S++  L +   G +L        V +  V      ++  H + V S+
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271

Query: 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKV 484
            F      +F+S   D  +  W       +  +     V +     D K 
Sbjct: 272 KFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKY 320

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314
                S+L+   S+D +Y+ +G  D    V++VI
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 30/213 (14%), Positives = 68/213 (31%), Gaps = 13/213 (6%)

Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLS 340
           L H   +  +  S   +++ +GG  G V+VW +            +  P      +N  +
Sbjct: 48  LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHP--------GNKSPVSQLDCLNRDN 98

Query: 341 QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400
            +    +  +      +L    + + + +                   +         + 
Sbjct: 99  YIRSCKLLPDG----CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154

Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
              S  +D  + +W +     +R F  +    S      D     +G +D  VR W++R 
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE 214

Query: 461 CQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC 493
            + +   D    + ++ YCP G+       +  
Sbjct: 215 GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN 247

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 8e-05
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV 416
             + +    SS VL    S +  ++++ S DK   +++V
Sbjct: 298 ASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.0 bits (180), Expect = 5e-15
 Identities = 40/241 (16%), Positives = 88/241 (36%), Gaps = 31/241 (12%)

Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT-------------------------CVV 368
           +  +          +   I   K+   +  ++                            
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 369 LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL-LSSSADKTVRLWQVGIDRCLRVFS- 426
                     +    F GH+ +V+ LS + +  L +S + D + +LW V    C + F+ 
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224

Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI---VSAVCYCPDGK 483
           H + + ++ F P + N F +GS D   R++++R  Q +       I   +++V +   G+
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283

Query: 484 V 484
           +
Sbjct: 284 L 284

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.7 bits (174), Expect = 2e-14
 Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 21/176 (11%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H G ++++  + D +   SG  D + ++W V E      F   ++D + + F        
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-------- 234

Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F 401
                         +   +           +    E   +        +  +S+SK+G  
Sbjct: 235 ----------FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284

Query: 402 LLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
           LL+   D    +W         V + H+N V+ +     D     +GS D  ++IW
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 7e-14
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 6/111 (5%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNY---VTSV 434
                F GH S++  + +  NG    + S D T RL+ +  D+ L  +SH+N    +TSV
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276

Query: 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKV 484
           +F+       ++G  D    +W+  +             VS +    DG  
Sbjct: 277 SFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.2 bits (165), Expect = 3e-13
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 21/139 (15%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
           Q F  HE  I  + F  +G   A+G +D T R++ +   + L  +   +        + +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGHSSEVLDLSW 396
              +L+              L    D  C      V+  L+        GH + V  L  
Sbjct: 280 KSGRLL--------------LAGYDDFNC-----NVWDALKADRAGVLAGHDNRVSCLGV 320

Query: 397 SKNG-FLLSSSADKTVRLW 414
           + +G  + + S D  +++W
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299
           S +       L  G       V    K  R             H+  +  +  + DG  +
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRA-------GVLAGHDNRVSCLGVTDDGMAV 327

Query: 300 ASGGEDGTVRVW 311
           A+G  D  +++W
Sbjct: 328 ATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 349 KEKI-DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406
           K +I D  K+   ++          V R+  +     +GH +++  + W  +   L+S+S
Sbjct: 15  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSAS 74

Query: 407 ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP 438
            D  + +W       +      +++V + A+ P
Sbjct: 75  QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 1e-12
 Identities = 30/218 (13%), Positives = 67/218 (30%), Gaps = 21/218 (9%)

Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL-----------------DGFDV 324
            H+  ++T      G  + SG +D T++VW  +  + L                 +    
Sbjct: 14  GHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72

Query: 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384
             TD +   +       +  +      +       K           +V+ +        
Sbjct: 73  GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132

Query: 385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF 444
                  +         ++S + D  V++W    + CL     +           D  + 
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHV 190

Query: 445 ISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPD 481
           +SGS+D  +R+W+V     +   T  + + S +    +
Sbjct: 191 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 228

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 31/177 (17%)

Query: 290 MKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK 349
                DG ++ SG  D ++RVW V     +       +  S +    N L          
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNIL---------- 230

Query: 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADK 409
                   +  ++D T  +   K  + L+        H S V  L ++KN F+++SS D 
Sbjct: 231 --------VSGNADSTVKIWDIKTGQCLQTL-QGPNKHQSAVTCLQFNKN-FVITSSDDG 280

Query: 410 TVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDNYFISGSIDG----KVRIW 456
           TV+LW +     +R             V  +  +         GS +G    K+ + 
Sbjct: 281 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 8e-09
 Identities = 38/195 (19%), Positives = 67/195 (34%), Gaps = 30/195 (15%)

Query: 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356
           + + SG  D  V+VW       L            L F   H+                 
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHV----------------- 190

Query: 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416
            +  S D +  V   +        +H   GH S    +    N  L+S +AD TV++W +
Sbjct: 191 -VSGSLDTSIRVWDVETG----NCIHTLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDI 244

Query: 417 GIDRCLRVFSHNNYVTSVAFN-PVDDNYFISGSIDGKVRIWEVRRCQVV------DYTDI 469
              +CL+     N   S       + N+ I+ S DG V++W+++  + +      +    
Sbjct: 245 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 304

Query: 470 REIVSAVCYCPDGKV 484
             +V  +       V
Sbjct: 305 GGVVWRIRASNTKLV 319

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 3/103 (2%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN 437
           K     +GH   V+         ++S S D T+++W     +CLR    H   V S    
Sbjct: 7   KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480
              +      +              +         V  +    
Sbjct: 67  D--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 107

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 2e-12
 Identities = 14/120 (11%), Positives = 39/120 (32%), Gaps = 5/120 (4%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV----GIDRCLRVFSHNNYVTS 433
           + +   Q     + D+    +   LL +S D ++ +++          L+   + + +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC 493
             F    D     G++ G++   ++            E    +C        +  A ++ 
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 6e-08
 Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437
           +   +    +  V  + +S     L +  +D  +  W +   + ++ F+  N  + V   
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301

Query: 438 PVDDNYFISGSIDGKVRIWEV 458
              DN     + D   +    
Sbjct: 302 C-SDNILCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 5e-07
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
           A +  I  +K       L     DG++ V+K 
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKF 40

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 14/105 (13%), Positives = 25/105 (23%), Gaps = 17/105 (16%)

Query: 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----------------HNNYVTSVAFNP 438
              +      SS D  V +            S                    V S+ F+P
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261

Query: 439 VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483
               +  +   DG +  W ++  + +         S V       
Sbjct: 262 -RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN 305

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.9 bits (156), Expect = 5e-12
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 382 HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFN 437
           H F      +   +W+K+   +     +  V +++   ++ ++V     HN  VT V + 
Sbjct: 3   HSF--LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC 493
           P D N  ++   D    +W ++         I  I  A          +  A    
Sbjct: 61  P-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG 115

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 22/213 (10%), Positives = 53/213 (24%), Gaps = 6/213 (2%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
            E   H G +  + ++ D   + + G D    VW +          +   + +       
Sbjct: 45  HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 104

Query: 338 HLSQLIPIDVDKEKID----KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
              +   +      I     + ++           +   V  L   P        S    
Sbjct: 105 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164

Query: 394 LS-WSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGK 452
              +S     +      T    ++     +   S +           + +     S D  
Sbjct: 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 224

Query: 453 VRIWEVR-RCQVVDYTDIREIVSAVCYCPDGKV 484
           V + +   +  V         + AV +  +  +
Sbjct: 225 VCLADADKKMAVATLASETLPLLAVTFITESSL 257

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 8e-06
 Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 4/84 (4%)

Query: 383 EFQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD 441
            F G        S           + DK                 H N V+ ++      
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK 338

Query: 442 N---YFISGSIDGKVRIWEVRRCQ 462
                F +  +DG + IW+VR  +
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 14/180 (7%), Positives = 39/180 (21%), Gaps = 63/180 (35%)

Query: 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI 345
            I    ++ D   +A    +  V ++                                  
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIY---------------------------------- 34

Query: 346 DVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS 404
           +    K  +   L++ +                           +V  + W+ +   +++
Sbjct: 35  EKSGNKWVQVHELKEHNG--------------------------QVTGVDWAPDSNRIVT 68

Query: 405 SSADKTVRLWQVGIDRCLRVFSHNNY--VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462
              D+   +W +                         ++  F  GS    + I    +  
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 265 KKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY----LASGGEDGTVRVWKV 313
           KK S E S+         H+ S+  +     G+       + G DG + +W V
Sbjct: 306 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.6 bits (150), Expect = 2e-11
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGK 452
           W  +    +  AD T+R+W V   +C++ +           V      +   IS S+DG 
Sbjct: 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 319

Query: 453 VRIWEV 458
           +  +E+
Sbjct: 320 LNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 16/123 (13%)

Query: 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVD 440
             +    LS+                VR    G  +   V       ++ VT+V F+P+ 
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 441 D-NYFISGSIDGKVRIWEVR---------RCQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490
              Y  SG   GKV +W                 ++  +   +S + +  +G+       
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135

Query: 491 NFC 493
              
Sbjct: 136 GRD 138

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 7/42 (16%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 379 KPLHEFQGHSSEV----LDLSWSKNGFLLSSSADKTVRLWQV 416
           K + ++     ++    + +  + NG ++S S D T+  +++
Sbjct: 284 KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 37/256 (14%), Positives = 61/256 (23%), Gaps = 49/256 (19%)

Query: 278 QEFLAHEGSILT-MKFS--LDGQYLASGGEDGTVRVWKV--------------------- 313
            +F  H  S++T +KFS     QYL SG E G V VW                       
Sbjct: 56  VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA 115

Query: 314 ---------------IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358
                                                         I+    K  +    
Sbjct: 116 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS 175

Query: 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI 418
               D   VV                    S V D+ +S +      +     ++     
Sbjct: 176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 235

Query: 419 DRCLRVFSHNNYVTSVAFN-----PVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTD 468
                +    +    V         +D   F +   D  +R+W+V   + V     D   
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295

Query: 469 IREIVSAVCYCPDGKV 484
           +      V    +G++
Sbjct: 296 LGNQQVGVVATGNGRI 311

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.9 bits (148), Expect = 4e-11
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 5/116 (4%)

Query: 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFN 437
                GH+  +  LS S +G  L S+ A+  +  W +      RVF   H   +T +   
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC 493
              D + +S      +++       V     +   +S+           + A   C
Sbjct: 65  SKGDLFTVSWDDH--LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.8 bits (114), Expect = 5e-07
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGK 452
              N  L + S D +V +W +       +    +H     +      ++   +S   D  
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSN 291

Query: 453 VRIWEV 458
           ++ W V
Sbjct: 292 IKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.8 bits (114), Expect = 5e-07
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
           H  +I  +  S DG+ L S   +G +  W +
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDI 41

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 3e-05
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
             AH  S +     L+   + S G+D  ++ W V
Sbjct: 264 KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 381 LHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416
           + +     S V  + W     ++S+  D  ++ W V
Sbjct: 262 IIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 61.4 bits (147), Expect = 7e-11
 Identities = 19/199 (9%), Positives = 47/199 (23%), Gaps = 13/199 (6%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
                         F  D + L              +        +      S  +    
Sbjct: 172 FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV------LNFSFEVVSKPFVIPL 225

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
                 P  +    +         +D+     P  V     + +   +            
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285

Query: 398 KNGFLL-SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
           +       +     +  + V   +   V ++   +T +  +  D    +    DGK+  +
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN---LTDLRLSA-DRKTVMVRKDDGKIYTF 341

Query: 457 EVRR--CQVVDYTDIREIV 473
            + +   +    TD R +V
Sbjct: 342 PLEKPEDERTVETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 4/37 (10%), Positives = 17/37 (45%)

Query: 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
            ++    + ++  ++ S D + +    +DG +  + +
Sbjct: 307 TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 13/215 (6%), Positives = 46/215 (21%), Gaps = 25/215 (11%)

Query: 281 LAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKV--IEHERLDGFDVQDTDPSCLYFTI 336
           +     I  ++   D +     G      + ++     + E+ +                
Sbjct: 39  VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGK 98

Query: 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396
             +      ++    ++  K          ++    +        + F            
Sbjct: 99  FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH-------- 150

Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
                       + + ++ +   +     + N++  + AF+  D       S        
Sbjct: 151 ----GETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSP 205

Query: 457 EVR--------RCQVVDYTDIREIVSAVCYCPDGK 483
           +            +      I    +     P   
Sbjct: 206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 14/90 (15%)

Query: 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLW-------QVGIDRCLRVFSHNNYVTSVAF 436
            + H +++  +S   + F +S S D  +++W       +   D+    F H + +  V  
Sbjct: 10  GKAHDADIFSVSACNS-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 437 ------NPVDDNYFISGSIDGKVRIWEVRR 460
                 +  +     + S  G +  + + R
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITR 98

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 25/229 (10%), Positives = 66/229 (28%), Gaps = 38/229 (16%)

Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
           AH+  I ++       +  S   DG ++VW     +  +      +    ++ +  H   
Sbjct: 12  AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLD--NENPKDKSYSHFVHKSGLHHVD 67

Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVL------PPKVFRLLEKPLHEFQGHSSEVLDLS 395
           ++   ++++  +       S     +          K     +  L +          L 
Sbjct: 68  VLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 396 WSKNG------FLLSSSADKTVRLWQVGIDR-------------------CLRVFSHNNY 430
           W  +        L+++    T  +W+                             + + +
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
            TSV  +        +G  +G V+I E+   + +   + +  +      
Sbjct: 187 ATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 34/232 (14%), Positives = 69/232 (29%), Gaps = 32/232 (13%)

Query: 283 HEGSILTMKFSLDG-----QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
            + S   +K+           L +    GT  +WK             +  P+       
Sbjct: 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 177

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP---KVFRLLEKPLHEFQGHSSEVLDL 394
                         I +   +    +   V +            +  H    +S+ +  +
Sbjct: 178 ESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237

Query: 395 SWSKNGFLLSSSAD------------------KTVRLWQVGIDRCLRVFSHNNYVTSVAF 436
            +S  G LL+ + D                   ++ +        L  F+H+++V S++F
Sbjct: 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297

Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQVV----DYTD-IREIVSAVCYCPDGK 483
           N        S   DGK+R W+V+  + +     + D I      +     G 
Sbjct: 298 ND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 2e-10
 Identities = 33/233 (14%), Positives = 71/233 (30%), Gaps = 26/233 (11%)

Query: 273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCL 332
           SL            +  +++  D Q + SG  D T+++W     E             CL
Sbjct: 4   SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61

Query: 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC---------------------VVLPP 371
            +    +         +     T  +  +    C                     + +  
Sbjct: 62  QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYV 431
                         GH + V  + +     + S+S D+T+++W         V + N + 
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIV-SASGDRTIKVWNTSTCEF--VRTLNGHK 178

Query: 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKV 484
             +A     D   +SGS D  +R+W++     +   +  E +       + ++
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRI 231

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 5e-07
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 13/96 (13%)

Query: 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV---------GIDRCL 422
           +++ +             E++      N  ++S + D  +++W +             CL
Sbjct: 201 RLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260

Query: 423 RVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
           R    H+  V  + F   D+   +S S D  + IW+
Sbjct: 261 RTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP 438
           + +    GH   +  L +     ++S S+D T+RLW +    CLRV   +  +       
Sbjct: 169 EFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIR 225

Query: 439 VDDNYFISGSIDGKVRIWEVR 459
            D+   +SG+ DGK+++W++ 
Sbjct: 226 FDNKRIVSGAYDGKIKVWDLV 246

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 248 HELTLGQRMRRVRVHPVK--KQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305
             +  G    +++V  +      R  +     +  + H G +  ++F  D   + S   D
Sbjct: 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD 286

Query: 306 GTVRVW 311
            T+ +W
Sbjct: 287 DTILIW 292

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 2e-09
 Identities = 8/77 (10%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 382 HEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV 439
                H++     ++  +  +L S ++    ++ +   + +        + + SV F   
Sbjct: 276 KFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG- 334

Query: 440 DDNYFISGSIDGKVRIW 456
                 +   DG+  + 
Sbjct: 335 -KTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 2e-09
 Identities = 18/108 (16%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN 442
            +GH + V+     ++ ++++ + DK +R++     + L   S H+  V ++ +      
Sbjct: 8   LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GG 65

Query: 443 YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSAC 490
             +SGS D  VR+W++++       +            + K  +    
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 113

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 1e-08
 Identities = 26/211 (12%), Positives = 61/211 (28%), Gaps = 19/211 (9%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H  S++T     +  Y+ +G +D  +RV+  I  + L      D     L +    +   
Sbjct: 11  HMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI--- 66

Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL 402
                          L   S    V +                     +  + +    ++
Sbjct: 67  ---------------LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI 111

Query: 403 LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462
           ++ S D T+ +W++  +  +      +    V   P ++ YF+         +  V    
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171

Query: 463 VVDYTDIREIVSAVCYCPDGKVRQNSACNFC 493
            +  +   +    V      K     + +  
Sbjct: 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 202

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 414 WQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR--RCQVVDYTDIRE 471
                D   +   H+  ++++    V DN  +SGS + +  I+ +R  +    +     +
Sbjct: 267 GWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDAD 325

Query: 472 IVSAVCYCPDGKV 484
            + +V +     V
Sbjct: 326 QIWSVNFKGKTLV 338

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 3e-09
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437
           ++ L    GH+  +  L+ +    L+S S D  +  W            H+N + S+  +
Sbjct: 3   DEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSMHQ----DHSNLIVSLDNS 55

Query: 438 P 438
            
Sbjct: 56  K 56

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (128), Expect = 1e-08
 Identities = 9/79 (11%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 382 HEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPV 439
                 + +  +    +   + + S D  + ++ V    + ++  + H + V ++ +   
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET- 268

Query: 440 DDNYFISGSIDGKVRIWEV 458
             +  +S   D  ++ W V
Sbjct: 269 -PSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 2e-07
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416
            K +     H   V +L W     L+SS AD  ++ W V
Sbjct: 248 MKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 2e-06
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 417 GIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475
           G D  L+  S HN  +T++  NP      ISGS DG++  W           D   ++ +
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH----QDHSNLIVS 51

Query: 476 VCYCPDGKVRQNSACNFC 493
           +      +    S  +  
Sbjct: 52  LDNSKAQEYSSISWDDTL 69

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (108), Expect = 3e-06
 Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTM 290
           ++      G+   +  +  +  G     + ++ VK+  + + +L       AH+  +  +
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN------AHKDGVNNL 264

Query: 291 KFSLDGQYLASGGEDGTVRVWKVI 314
            +      L S G D  ++ W V+
Sbjct: 265 LWETPS-TLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 4/36 (11%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
           +    H   I  +  +     L SG  DG +  W  
Sbjct: 7   KTISGHNKGITALTVN----PLISGSYDGRIMEWSS 38

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 55.9 bits (133), Expect = 4e-09
 Identities = 17/187 (9%), Positives = 49/187 (26%), Gaps = 8/187 (4%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD-----VQDTDPSCLYFTIN 337
               +  M+ + DG    +G +   + V        L   +         D    +   +
Sbjct: 143 MPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS 202

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
              +   +       D  +    +  L   +      +  +    EF   +        S
Sbjct: 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD--LKTGKTHTQEFADLTELYFTGLRS 260

Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
                        +  + +   + ++  + ++    VAF+    +    G     + ++ 
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFN 319

Query: 458 VRRCQVV 464
               + V
Sbjct: 320 PDTLEKV 326

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 9/50 (18%), Positives = 17/50 (34%)

Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS 330
              + +   + F   G  L  GG    + V+     E++    +   D S
Sbjct: 288 ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMS 337

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 12/231 (5%), Positives = 45/231 (19%), Gaps = 25/231 (10%)

Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK--------------------- 312
                       S+ +   S DG+ + +                                
Sbjct: 78  ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 137

Query: 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372
           V          +         +        + +   K     T +L   +        P 
Sbjct: 138 VRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKY----TVALPLRNWNRKGYSAPD 193

Query: 373 VFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVT 432
           V           +      +           ++          +   +       +    
Sbjct: 194 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 253

Query: 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483
                    +      +  ++  +++++ +++   ++      V +   G 
Sbjct: 254 YFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGD 304

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.9 bits (130), Expect = 6e-09
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI 449
            + L  +  G  +      +V    VG      +++ H++  T    +P    Y  SG +
Sbjct: 20  AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDV 78

Query: 450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC 493
            G VRIW+  +   +  T I      V         +  A    
Sbjct: 79  HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGE 122

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 1e-08
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKV 453
                 + S+SADKT+++W V   +  +            +          +S S +G +
Sbjct: 247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFI 305

Query: 454 RIWE 457
               
Sbjct: 306 NFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 269 RELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311
             + SL   + +  H       K S  G Y ASG   G VR+W
Sbjct: 43  VPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 10/119 (8%), Positives = 26/119 (21%), Gaps = 4/119 (3%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSV 434
                +  HS +      S +G +  S      VR+W       +        +  V  +
Sbjct: 49  TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108

Query: 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC 493
           +++         G    +     +      +     +  +                   
Sbjct: 109 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 167

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (116), Expect = 5e-07
 Identities = 15/187 (8%), Positives = 50/187 (26%), Gaps = 10/187 (5%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP-----SCLYFTIN 337
               I  + ++ DG  L   G D  V   +             + +          +  +
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
             S ++       + D   +   +     + +  +   +  +   E +         + +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR---EVRIMDVFYFSTAVN 249

Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
                   +    +  + +  +  ++     +   SV  +  D +    G   G +  ++
Sbjct: 250 PAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVST-DGSTVWLGGALGDLAAYD 307

Query: 458 VRRCQVV 464
               +  
Sbjct: 308 AETLEKK 314

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 9e-05
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324
           +    S  ++  S DG  +  GG  G +  +     E+    D+
Sbjct: 276 VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 5/82 (6%), Positives = 21/82 (25%), Gaps = 3/82 (3%)

Query: 401 FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
           ++L+ +    + +         +V                P     + + +    +   +
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 458 VRRCQVVDYTDIREIVSAVCYC 479
           +   + +   D+      V   
Sbjct: 63  LVTGETLGRIDLSTPEERVKSL 84

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (116), Expect = 5e-07
 Identities = 20/190 (10%), Positives = 45/190 (23%), Gaps = 4/190 (2%)

Query: 277 GQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
               +             DG         +GT  +         D F +     S     
Sbjct: 149 DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR 208

Query: 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395
           +   +    I          K L     LT             + +      + + + L 
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA--YHRALDRIYLL 266

Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVR 454
             +       +A + V +        L  F   + + S+  +  +        + D  + 
Sbjct: 267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLY 326

Query: 455 IWEVRRCQVV 464
           I +    + +
Sbjct: 327 IHDAESGEEL 336

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.1 bits (108), Expect = 5e-06
 Identities = 11/185 (5%), Positives = 34/185 (18%), Gaps = 7/185 (3%)

Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
               +      S      AS           V           Q+            +  
Sbjct: 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA----QCTGAQNCSSQAAQANYPGMLV 226

Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF 401
                   +           + +       K                +    +  +    
Sbjct: 227 WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286

Query: 402 LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY--FISGSIDGKVRIWEVR 459
               +A +        + +     S+ +   ++     D     + + +    + I++  
Sbjct: 287 RSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAA 345

Query: 460 RCQVV 464
             Q  
Sbjct: 346 SDQDQ 350

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.1 bits (108), Expect = 7e-06
 Identities = 10/101 (9%), Positives = 30/101 (29%), Gaps = 7/101 (6%)

Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
             N F ++      + L      + ++V      V     +     Y +    D ++ + 
Sbjct: 30  LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMI 88

Query: 457 EVRRCQ------VVDYTDIREIVSAVCYCPDGKVRQNSACN 491
           ++   +      +    + R + S+     + +     A  
Sbjct: 89  DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW 129

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 45.2 bits (105), Expect = 9e-06
 Identities = 11/90 (12%), Positives = 26/90 (28%)

Query: 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463
           ++S    + +  V  ++        +       +P     +++ +    V I +     V
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

Query: 464 VDYTDIREIVSAVCYCPDGKVRQNSACNFC 493
           +           V   PDGK    +     
Sbjct: 67  IATVPAGSSPQGVAVSPDGKQVYVTNMASS 96

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 7/56 (12%), Positives = 17/56 (30%)

Query: 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465
           TV +   G ++             +A  P     +++ S    V + +     +  
Sbjct: 225 TVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 7/92 (7%)

Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
           +N F ++      + L          V      V     +     Y      DGKV + +
Sbjct: 31  ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMID 89

Query: 458 VR--RCQVVD----YTDIREIVSAVCYCPDGK 483
           +       V      ++ R I ++     + K
Sbjct: 90  LWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 9/97 (9%), Positives = 30/97 (30%), Gaps = 7/97 (7%)

Query: 404 SSSADKTVRLWQV---GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-- 458
           +S   + + +W +   G     +V      V  +  +P     ++    + +V  + +  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 459 --RRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC 493
                     + +   ++ +     G+     + N  
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAG 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	493
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.96
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.93
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.93
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.91
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.91
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.9
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.89
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.84
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.82
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.82
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.81
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.78
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.76
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.75
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.68
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.68
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.67
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.65
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.61
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.6
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.57
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.56
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.51
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.48
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.44
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.34
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.32
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.32
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.16
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.97
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.93
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.88
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.83
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.8
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.77
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.65
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.61
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.59
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.59
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.43
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.4
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.39
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.31
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.06
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.92
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.88
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.77
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.76
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.66
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.46
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.35
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.27
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.86
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.58
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.24
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.68
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.5
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.34
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.98
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.84
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.43
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.9
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.3
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.89
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.92
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	91.75
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	90.24
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.13
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	89.12
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	89.1
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	83.52
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	82.78

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=3.3e-30  Score=250.40  Aligned_cols=254  Identities=16%  Similarity=0.206  Sum_probs=194.5

Q ss_pred             cCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCc
Q 011126          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (493)
                      .+.+.+|.+.|.+++|+|++.+||+|+.||+|+|||+.+..       ..+.+..|...|.+++|+|++.+|++|+.|+.
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~-------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~  120 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-------KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-------EEEEEECSCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce-------eEEEEecccccEEeeEeeccceeeeeecccce
Confidence            34578899999999999999999999999999999987543       23457889999999999999999999999999


Q ss_pred             EEEEecCCCeee----eeeeccCCCCceEEEeeCC-------CCceeeeeccC-----------c-------cccceeee
Q 011126          308 VRVWKVIEHERL----DGFDVQDTDPSCLYFTINH-------LSQLIPIDVDK-----------E-------KIDKTKSL  358 (493)
Q Consensus       308 V~iWdl~~~~~~----~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-----------~-------~~~~~~~~  358 (493)
                      +++|+.......    ..+..+.............       ...........           .       .......+
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             eecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence            999997654322    2222222211111111100       00000000000           0       00112234


Q ss_pred             ecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEE
Q 011126          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSV  434 (493)
Q Consensus       359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v  434 (493)
                      .+..++.+.+|+....    +++..+.+|...|++++|+|++ +|++|+.|++|++||+.....+..+.   +...|+++
T Consensus       201 ~~~~d~~v~i~d~~~~----~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~  276 (340)
T d1tbga_         201 SGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV  276 (340)
T ss_dssp             EEETTTEEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             EeecCceEEEEECCCC----cEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE
Confidence            5566777777766543    4577889999999999999999 99999999999999999998888774   67889999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      +|+| ++++|++|+.||.|+|||+.+++.+ .+.+|..+|++++|+|+|++|++++.|++
T Consensus       277 ~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         277 SFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             EECS-SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             EECC-CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCE
Confidence            9999 9999999999999999999998887 47889999999999999999999998863

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-29  Score=249.33  Aligned_cols=252  Identities=15%  Similarity=0.171  Sum_probs=189.4

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd  312 (493)
                      .|...|.+++|+|+|++||+|+ ||.|+|||+.......  ........+|.+.|++|+|+|+|++|++|+.||+|++||
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~--~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS--PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS--CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc--eeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence            5778889999999999999997 8999999997654221  112223467999999999999999999999999999999


Q ss_pred             cCCCe--eeeeeeccCCCCceEEEeeCCC--------CceeeeeccCcccc------------------ceeeeecCCCc
Q 011126          313 VIEHE--RLDGFDVQDTDPSCLYFTINHL--------SQLIPIDVDKEKID------------------KTKSLRKSSDL  364 (493)
Q Consensus       313 l~~~~--~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~------------------~~~~~~~s~~~  364 (493)
                      +....  ....+..+...+..+.+.++..        ..+..+........                  ....+.++.++
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~  205 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN  205 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            87543  4444555544444444433321        11212221111110                  01112233444


Q ss_pred             eEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCE
Q 011126          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY  443 (493)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~  443 (493)
                      .+.+|+.+..    +.+. ...|...|.+++|+|++ +|++++.|+.|++||+..+.......|...|++++|+| ++++
T Consensus       206 ~v~i~d~~~~----~~~~-~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~-~g~~  279 (337)
T d1gxra_         206 TVRSWDLREG----RQLQ-QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKW  279 (337)
T ss_dssp             EEEEEETTTT----EEEE-EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT-TSSE
T ss_pred             cccccccccc----eeec-ccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECC-CCCE
Confidence            4555544322    2233 34588999999999999 99999999999999999999988888999999999999 9999


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          444 FISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       444 l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      |++|+.||.|++||+.+++.+....|...|++++|+|+|++|++++.|++
T Consensus       280 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~  329 (337)
T d1gxra_         280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK  329 (337)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred             EEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence            99999999999999999999887888999999999999999999998763

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1e-28  Score=240.71  Aligned_cols=237  Identities=17%  Similarity=0.186  Sum_probs=190.6

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC--CCcE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE--DGTV  308 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~V  308 (493)
                      +.+|.+.+.+++|+|+|++||+|+.||+|+||++......+     ...+.+|.++|.+|+|+|++++|++++.  +..+
T Consensus        54 ~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~  128 (311)
T d1nr0a1          54 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL-----KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  128 (311)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE-----EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc-----ccccccccCccccccccccccccccccccccccc
Confidence            45677888899999999999999999999999998655332     2357889999999999999999999986  4569


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      +||++.+++....+..+...+.++.|.+....               ..+.++.++.+.+|+.+..    +....+.+|.
T Consensus       129 ~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~---------------~l~sgs~d~~i~i~d~~~~----~~~~~~~~~~  189 (311)
T d1nr0a1         129 HVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF---------------RIISGSDDNTVAIFEGPPF----KFKSTFGEHT  189 (311)
T ss_dssp             EEEETTTCCBCBCCCCCSSCEEEEEECSSSSC---------------EEEEEETTSCEEEEETTTB----EEEEEECCCS
T ss_pred             ccccccccccccccccccccccccccccccee---------------eeccccccccccccccccc----cccccccccc
Confidence            99999999888888777776777766554322               1234556677888876654    3466778899


Q ss_pred             CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec--------CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      ..|++++|+|++ +|++++.|+.|++||+.++..+..+.        |.+.|++++|+| ++++|++|+.||+|+|||++
T Consensus       190 ~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCC-CCCEEEEEeCCCeEEEEECC
Confidence            999999999999 99999999999999999998887763        788999999999 99999999999999999999


Q ss_pred             CCeEEE-ecCCCC-CeEEEEEccCCCEEEEeecCC
Q 011126          460 RCQVVD-YTDIRE-IVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       460 ~~~~~~-~~~~~~-~I~sv~~spdG~~l~s~s~d~  492 (493)
                      +++++. +..+.. ....+++.+++.+|++++.|+
T Consensus       269 t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG  303 (311)
T d1nr0a1         269 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG  303 (311)
T ss_dssp             TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred             CCcEEEEEECCCCccceEEEEEecCCEEEEEECCC
Confidence            999875 433322 223344555667788888775

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.3e-28  Score=235.37  Aligned_cols=235  Identities=19%  Similarity=0.302  Sum_probs=176.4

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC--------------
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--------------  295 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--------------  295 (493)
                      .+.+|.+.|.+++|+|++++||+|+.||+|+|||+.+...       .+++.+|.+.|++++|+|+              
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~-------~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~   84 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-------ERTLKGHTDSVQDISFDHSGKLLASCSADMTIK   84 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-------CEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE-------EEEEeCCCCcEEEEeeecccccccccccccccc
Confidence            4788999999999999999999999999999999875432       2234445555555555554              


Q ss_pred             ----------------------------CCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeec
Q 011126          296 ----------------------------GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDV  347 (493)
Q Consensus       296 ----------------------------g~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (493)
                                                  +.+|++++.|+.+++||+.+++.+..+..+.....++.+.+..         
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  155 (317)
T d1vyhc1          85 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG---------  155 (317)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS---------
T ss_pred             cccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCC---------
Confidence                                        4555555555555555555555554444443333333332211         


Q ss_pred             cCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC---------------------eEEEEe
Q 011126          348 DKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---------------------FLLSSS  406 (493)
Q Consensus       348 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g---------------------~l~sgs  406 (493)
                             ...+.++.++.+.+|+....    +.+..+.+|...+.+++|+|++                     ++++++
T Consensus       156 -------~~l~~~~~d~~v~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (317)
T d1vyhc1         156 -------TLIASCSNDQTVRVWVVATK----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  224 (317)
T ss_dssp             -------SEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             -------CEEEEEeCCCeEEEEeeccc----eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc
Confidence                   12234455666666655442    3466778899999999987743                     588999


Q ss_pred             CCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEEccCCCE
Q 011126          407 ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKV  484 (493)
Q Consensus       407 ~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~  484 (493)
                      .|+.|++||+.+++++..+. |...|++++|+| ++++|++|+.||.|+|||+.+++++ .+..|...|++++|+|+|++
T Consensus       225 ~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~  303 (317)
T d1vyhc1         225 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY  303 (317)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence            99999999999999998886 899999999999 9999999999999999999998876 57789999999999999999


Q ss_pred             EEEeecCC
Q 011126          485 RQNSACNF  492 (493)
Q Consensus       485 l~s~s~d~  492 (493)
                      |++++.|+
T Consensus       304 l~s~s~Dg  311 (317)
T d1vyhc1         304 VVTGSVDQ  311 (317)
T ss_dssp             EEEEETTS
T ss_pred             EEEEeCCC
Confidence            99999886

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=5e-29  Score=248.46  Aligned_cols=234  Identities=15%  Similarity=0.149  Sum_probs=179.5

Q ss_pred             ecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecC
Q 011126          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (493)
Q Consensus       235 ~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~  314 (493)
                      .+.|.+++|+|+|++||+|+.++.|+||+.....     +.....+.+|.++|++|+|+|++++|++|+.|++|+|||+.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-----~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC-----EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence            4678899999999999999999999999986433     22345688999999999999999999999999999999998


Q ss_pred             CCeeeeeee--ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEe
Q 011126          315 EHERLDGFD--VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (493)
Q Consensus       315 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  392 (493)
                      ++.....+.  .+...+.++.|.+++.  .              .+.++.++.+.+|................+|...|.
T Consensus        82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~--~--------------l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~  145 (371)
T d1k8kc_          82 GRTWKPTLVILRINRAARCVRWAPNEK--K--------------FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  145 (371)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSS--E--------------EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             ccccccccccccccccccccccccccc--c--------------ceeecccCcceeeeeecccccccccccccccccccc
Confidence            876554443  3344455666554432  1              123334444444432211111112344567899999


Q ss_pred             EEEEeCCC-eEEEEeCCCeEEEEECCCCc------------------EEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCe
Q 011126          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDR------------------CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGK  452 (493)
Q Consensus       393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~------------------~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~  452 (493)
                      +++|+|++ +|++|+.|++|++|++....                  .+... .|...|++++|+| ++++|++++.|++
T Consensus       146 ~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~  224 (371)
T d1k8kc_         146 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDST  224 (371)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTE
T ss_pred             cccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-ccccccccccCCc
Confidence            99999999 99999999999999986432                  23333 3889999999999 9999999999999


Q ss_pred             EEEEeCCCCeEE-EecCCCCCeEEEEEccCCCEEEEeec
Q 011126          453 VRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       453 V~IWdl~~~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      |++||+.+++.+ .+..|..+|++++|+|||++|++|..
T Consensus       225 i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d  263 (371)
T d1k8kc_         225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD  263 (371)
T ss_dssp             EEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETT
T ss_pred             ceEEeeecccceeeeecccccceeeeecCCCCEEEEEcC
Confidence            999999988776 57788899999999999998887653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=6.4e-28  Score=235.00  Aligned_cols=229  Identities=17%  Similarity=0.251  Sum_probs=180.7

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~  316 (493)
                      ....++++|+|+.||.+. ++.|.+|++....       ..+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++
T Consensus        19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~-------~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLT-------DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTCSS-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred             CeEEEEEcCCCCEEEEEe-CCEEEEEECCCCc-------eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecc
Confidence            334589999999999984 6679999987432       33457899999999999999999999999999999999887


Q ss_pred             eee--eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEE
Q 011126          317 ERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (493)
Q Consensus       317 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  394 (493)
                      ...  ..+..+...+.++.|.+++.. ++..             ....+..+.+|+...    .++...+.+|...|+++
T Consensus        91 ~~~~~~~~~~~~~~v~~v~~s~d~~~-l~~~-------------~~~~~~~~~v~~~~~----~~~~~~l~~h~~~v~~v  152 (311)
T d1nr0a1          91 THILKTTIPVFSGPVKDISWDSESKR-IAAV-------------GEGRERFGHVFLFDT----GTSNGNLTGQARAMNSV  152 (311)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCE-EEEE-------------ECCSSCSEEEEETTT----CCBCBCCCCCSSCEEEE
T ss_pred             ccccccccccccCccccccccccccc-cccc-------------ccccccccccccccc----ccccccccccccccccc
Confidence            654  345555566666666554321 1111             111222333443332    23456678999999999


Q ss_pred             EEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE------
Q 011126          395 SWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD------  465 (493)
Q Consensus       395 ~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~------  465 (493)
                      +|+|++  .|++|+.|++|++||+++++++..+. |...|+++.|+| ++++|++++.||.|++||+.++..+.      
T Consensus       153 ~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~  231 (311)
T d1nr0a1         153 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS  231 (311)
T ss_dssp             EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTT
T ss_pred             cccccceeeecccccccccccccccccccccccccccccccccccCc-cccccccccccccccccccccccccccccccc
Confidence            999998  68899999999999999999988886 899999999999 99999999999999999999887653      


Q ss_pred             --ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          466 --YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       466 --~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                        ..+|...|++++|+|+|++|++|+.|+
T Consensus       232 ~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg  260 (311)
T d1nr0a1         232 LKNVAHSGSVFGLTWSPDGTKIASASADK  260 (311)
T ss_dssp             SSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccCCCCCEEEEEeCCC
Confidence              235788999999999999999999875

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.9e-28  Score=240.67  Aligned_cols=313  Identities=18%  Similarity=0.191  Sum_probs=208.1

Q ss_pred             ceeeeecCCCceeEEccCCCchhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhcc
Q 011126          146 ACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKR  222 (493)
Q Consensus       146 ~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~  222 (493)
                      .+.+++....+.+-+.-...-+|...  |.-+.+   |+.|+... ++++.     +|.+........  +.........
T Consensus        39 ~~~~~~~~~~~~~~~~l~~~~~H~~~--V~~l~fs~dg~~lasg~-d~~i~-----iW~~~~~~~~~~--~~~~~~~~~~  108 (388)
T d1erja_          39 YYILYNPALPREIDVELHKSLDHTSV--VCCVKFSNDGEYLATGC-NKTTQ-----VYRVSDGSLVAR--LSDDSAANKD  108 (388)
T ss_dssp             CEEEECTTSCCCEEEEEEEEEECSSC--CCEEEECTTSSEEEEEC-BSCEE-----EEETTTCCEEEE--ECC-------
T ss_pred             cEEEeCCCCCcceeeeeEeeCCCCCc--EEEEEECCCCCEEEEEe-CCeEE-----EEEecccceEee--eccccccccc
Confidence            35566665555544321111135444  555554   67777765 66655     777654432111  1111111111


Q ss_pred             ccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE
Q 011126          223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG  302 (493)
Q Consensus       223 ~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg  302 (493)
                      ...........+...+.+++|+|++++|++|+.||.|++|+......       ...+.+|...|.++.|++++..++++
T Consensus       109 ~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~~~  181 (388)
T d1erja_         109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-------VMILQGHEQDIYSLDYFPSGDKLVSG  181 (388)
T ss_dssp             ----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-------EEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccc-------cccccccccccccccccccccccccc
Confidence            11112223345666788899999999999999999999999875432       23567899999999999999999999


Q ss_pred             ECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeec---cc
Q 011126          303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL---EK  379 (493)
Q Consensus       303 s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~  379 (493)
                      +.++.|++||+.+............ ...+.+.+....               ..+.++.++.+.+|+.......   ..
T Consensus       182 ~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~l~~~~~d~~i~i~~~~~~~~~~~~~~  245 (388)
T d1erja_         182 SGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGK---------------YIAAGSLDRAVRVWDSETGFLVERLDS  245 (388)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSC-EEEEEECSTTCC---------------EEEEEETTSCEEEEETTTCCEEEEEC-
T ss_pred             ccceeeeeeeccccccccccccccc-cccccccCCCCC---------------eEEEEcCCCeEEEeecccCccceeecc
Confidence            9999999999998877665544332 222222222111               2233455566666665432221   22


Q ss_pred             ceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEE------------E-EecCCCcEEEEEEccCCCCEEE
Q 011126          380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL------------R-VFSHNNYVTSVAFNPVDDNYFI  445 (493)
Q Consensus       380 ~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~------------~-~~~h~~~V~~v~fsp~d~~~l~  445 (493)
                      ......+|...|++++|+|++ +|++++.|+.|++||+.+....            . ...|...|++++|+| ++++|+
T Consensus       246 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~  324 (388)
T d1erja_         246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYIL  324 (388)
T ss_dssp             -----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEE
T ss_pred             ccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC-CCCEEE
Confidence            334456799999999999999 9999999999999999765432            2 223889999999999 999999


Q ss_pred             EEeCCCeEEEEeCCCCeEE-EecCCCCCeEEEEE------ccCCCEEEEeecCC
Q 011126          446 SGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY------CPDGKVRQNSACNF  492 (493)
Q Consensus       446 sgs~Dg~V~IWdl~~~~~~-~~~~~~~~I~sv~~------spdG~~l~s~s~d~  492 (493)
                      +|+.||.|+|||+++++++ .+.+|...|+++++      +|+|++|++|+.|+
T Consensus       325 sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg  378 (388)
T d1erja_         325 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC  378 (388)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             EEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCC
Confidence            9999999999999999887 57889999999975      67999999999886

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6e-26  Score=225.42  Aligned_cols=238  Identities=20%  Similarity=0.272  Sum_probs=178.8

Q ss_pred             eeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccc-----------cccceeeecccCCEEEEEEccCCCEEE
Q 011126          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS-----------LYTGQEFLAHEGSILTMKFSLDGQYLA  300 (493)
Q Consensus       232 ~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~-----------~~~~~~l~~H~~~I~~l~fspdg~~La  300 (493)
                      ..|.+.|.+++|+|+|++||+|+ |+.|+||++.+.......           .........|...|++|+|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            35889999999999999999997 899999998765432110           001122356888999999999999999


Q ss_pred             EEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccc
Q 011126          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (493)
Q Consensus       301 sgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  380 (493)
                      +|+.||.|++|+...++.+..+..+...+.++.+.....                ..+.++.++.+.+|+......    
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------~~~~~~~~~~i~~~d~~~~~~----  197 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD----------------KLVSGSGDRTVRIWDLRTGQC----  197 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSEEEEEETTTTEE----
T ss_pred             ecccccccccccccccccccccccccccccccccccccc----------------cccccccceeeeeeecccccc----
Confidence            999999999999999998888777666655555543321                223445566777776654322    


Q ss_pred             eEEEecCCCCEeEEEEeC-CC-eEEEEeCCCeEEEEECCCCcEEEEec--------CCCcEEEEEEccCCCCEEEEEeCC
Q 011126          381 LHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSID  450 (493)
Q Consensus       381 ~~~~~~h~~~V~~l~~sp-~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--------h~~~V~~v~fsp~d~~~l~sgs~D  450 (493)
                      ..... +.....++.+.+ ++ +|++++.|+.|++||+.++..+..+.        |...|++++|+| ++++|++|+.|
T Consensus       198 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d  275 (388)
T d1erja_         198 SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLD  275 (388)
T ss_dssp             EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             ccccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEEECC
Confidence            23333 444555666666 55 99999999999999999988877653        788999999999 99999999999


Q ss_pred             CeEEEEeCCCCeE-------------EEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          451 GKVRIWEVRRCQV-------------VDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       451 g~V~IWdl~~~~~-------------~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      |.|++||+++++.             .....|...|++++|+|+|++|++|+.|+
T Consensus       276 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg  330 (388)
T d1erja_         276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR  330 (388)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred             CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC
Confidence            9999999986532             23566788999999999999999998875

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=2.2e-25  Score=213.70  Aligned_cols=232  Identities=12%  Similarity=0.062  Sum_probs=169.9

Q ss_pred             CceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcE
Q 011126          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (493)
Q Consensus       229 ~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V  308 (493)
                      +.+.+|...|.+++|+|++++||+|+.||+|+|||+.+......      ...+|...|++++|+|+|++ ++++.|+.+
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~------~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v   78 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV------FPDVHATMITGIKTTSKGDL-FTVSWDDHL   78 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC------SSCSCSSCEEEEEECTTSCE-EEEETTTEE
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE------EcCCCCCcEEEEEeecccee-ecccceeeE
Confidence            35778999999999999999999999999999999876442211      12469999999999999975 566789999


Q ss_pred             EEEecCCCeeee---eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          309 RVWKVIEHERLD---GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       309 ~iWdl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      ++|++.......   ........+..+.+.+++  .++..               ..+..+.+|+...      ...  .
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g--~~~~~---------------~~~~~i~~~~~~~------~~~--~  133 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG--DIAVA---------------ACYKHIAIYSHGK------LTE--V  133 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTS--SCEEE---------------EESSEEEEEETTE------EEE--E
T ss_pred             EEeccCCcccccccccccccccccccccccccc--ccccc---------------ccccccccccccc------ccc--c
Confidence            999986543211   111112222233333222  11111               1122344443221      111  1


Q ss_pred             cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEE--EecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe
Q 011126          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~--~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~  462 (493)
                      .....+.+++|+|++ +|++++.|+.|++||+.+++...  ...|...|++++|+| ++.+|++++.|+.|++||+.++.
T Consensus       134 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~  212 (299)
T d1nr0a2         134 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNF  212 (299)
T ss_dssp             ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence            234567899999999 99999999999999998876544  445999999999999 99999999999999999998876


Q ss_pred             EE----EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          463 VV----DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       463 ~~----~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      ..    .+..|...|++++|+|+|++|++++.|++
T Consensus       213 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~  247 (299)
T d1nr0a2         213 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS  247 (299)
T ss_dssp             EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccccccceEEEcCCCE
Confidence            55    35668899999999999999999998763

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-24  Score=209.97  Aligned_cols=248  Identities=20%  Similarity=0.308  Sum_probs=178.0

Q ss_pred             ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (493)
Q Consensus       227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (493)
                      ....+.+|.+.|.+ +++++|++||+|+.||+|+|||+.+.+       ..+++.+|.+.|++++|+|+  +|++|+.|+
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~-------~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~   77 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-------CLRTLVGHTGGVWSSQMRDN--IIISGSTDR   77 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-------EEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-------EEEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence            33457788887754 578899999999999999999987543       33467899999999999875  999999999


Q ss_pred             cEEEEecCCCeeeeeeeccCCCCceEEE--------------------------------------eeC--------CCC
Q 011126          307 TVRVWKVIEHERLDGFDVQDTDPSCLYF--------------------------------------TIN--------HLS  340 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~--------~~~  340 (493)
                      ++++|++.....................                                      ...        ...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            9999998776554433322211110000                                      000        000


Q ss_pred             ceeeeeccCccc----------------cceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEE
Q 011126          341 QLIPIDVDKEKI----------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLS  404 (493)
Q Consensus       341 ~~~~~~~~~~~~----------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~s  404 (493)
                      .+...+......                .....+.++.++.+.+|+....    +++..+.+|...|.+++++++ +|++
T Consensus       158 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~~-~l~s  232 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG----NCIHTLTGHQSLTSGMELKDN-ILVS  232 (342)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC----CEEEEECCCCSCEEEEEEETT-EEEE
T ss_pred             eEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccc----eeeeEecccccceeEEecCCC-EEEE
Confidence            000011000000                0112234555666666665432    457788899999999988765 9999


Q ss_pred             EeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-e-----cCCCCCeE
Q 011126          405 SSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y-----TDIREIVS  474 (493)
Q Consensus       405 gs~Dg~V~lWd~~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~-----~~~~~~I~  474 (493)
                      ++.|++|++||+...+....+.    |...+.++.++|   +++++|+.||+|+|||+++++++. +     ..|...|+
T Consensus       233 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~  309 (342)
T d2ovrb2         233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW  309 (342)
T ss_dssp             EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEE
T ss_pred             EcCCCEEEEEecccccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEE
Confidence            9999999999999988877774    677888888755   799999999999999999998763 2     35677899


Q ss_pred             EEEEccCCCEEEEeecCC
Q 011126          475 AVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       475 sv~~spdG~~l~s~s~d~  492 (493)
                      +++|+|+|.++++|+.|+
T Consensus       310 ~v~~s~~~~~la~g~~dG  327 (342)
T d2ovrb2         310 RIRASNTKLVCAVGSRNG  327 (342)
T ss_dssp             EEEECSSEEEEEEECSSS
T ss_pred             EEEECCCCCEEEEEeCCC
Confidence            999999999999998775

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4e-25  Score=212.78  Aligned_cols=257  Identities=12%  Similarity=0.065  Sum_probs=178.6

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccC-CCEEEEEECCCcE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTV  308 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~V  308 (493)
                      -...|.+.|.+++|+|++++||+|+.||+|+||++.......    ......+|.++|++++|+|+ +.+|++|+.||+|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~----~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE----EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce----EEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            456788899999999999999999999999999986543221    11223479999999999986 4589999999999


Q ss_pred             EEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCc---------------------------------cccce
Q 011126          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKE---------------------------------KIDKT  355 (493)
Q Consensus       309 ~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~  355 (493)
                      ++|++....................+.......++....+..                                 .....
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            999998877766665555444443333332222222111100                                 00011


Q ss_pred             eeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEE---------EE
Q 011126          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCL---------RV  424 (493)
Q Consensus       356 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~---------~~  424 (493)
                      ..+.++.++.+.+|+........ .......+...+.+..+.+..  .+++++.|+.+.+|++......         ..
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDN-GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCC-CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             ceeeecCCCcEEEEecccCcccc-eeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            12344556666666654332221 122334455667777776654  8999999999999998643211         11


Q ss_pred             -------ecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          425 -------FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       425 -------~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                             ..|...|++|+|+| ++++||+|+.||+|+|||+.+++.+........+..++|+|+|++++++++|.
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd  314 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECT
T ss_pred             eeeccCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCC
Confidence                   12667899999999 99999999999999999999999886554445667789999999999988763

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.7e-24  Score=206.27  Aligned_cols=213  Identities=24%  Similarity=0.388  Sum_probs=172.6

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd  312 (493)
                      .+...+.++.++|++..+++++.|+.+++|++....       ....+.+|...+.+++|+|++.+|++++.|+.|++|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~  171 (317)
T d1vyhc1          99 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-------CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV  171 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccceeeeccCCCceEEeeccCcceeEeecccce-------eeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEe
Confidence            345556668999999999999999999999987543       2345788999999999999999999999999999999


Q ss_pred             cCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccC----ccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK----EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      +.+++....+..+...+.++.+.+.............    ..........++.++.+.+|+....    +++..+.+|.
T Consensus       172 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~~~  247 (317)
T d1vyhc1         172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMTLVGHD  247 (317)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT----EEEEEEECCS
T ss_pred             eccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC----cEEEEEeCCC
Confidence            9999988888877777667766655432211111100    0111223455667788888876543    4578889999


Q ss_pred             CCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd  457 (493)
                      ..|.+++|+|++ +|++++.|++|+|||+.+++++..+. |...|++++|+| ++++|++|+.||+|+|||
T Consensus       248 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEeC
Confidence            999999999999 99999999999999999999999986 999999999999 999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-24  Score=212.37  Aligned_cols=215  Identities=18%  Similarity=0.259  Sum_probs=166.5

Q ss_pred             eeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 011126          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (493)
Q Consensus       233 ~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWd  312 (493)
                      .|.+.+.+++|+|++++|++|+.||.|++|++......     ....+..|...|..+.|+|++.+|++++.|+.|++|+
T Consensus        95 ~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~  169 (337)
T d1gxra_          95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-----IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD  169 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-----EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEeecccccccccccccccc-----ccccccccccccccccccccccccccccccccccccc
Confidence            35566778999999999999999999999998754432     2345778999999999999999999999999999999


Q ss_pred             cCCCeeeeeeeccCCCCceEEEeeCCCCc--------eeeeeccCccccc-----------------eeeeecCCCceEE
Q 011126          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQ--------LIPIDVDKEKIDK-----------------TKSLRKSSDLTCV  367 (493)
Q Consensus       313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-----------------~~~~~~s~~~~~~  367 (493)
                      +.+++.......+...+.++.+.+.....        +..++........                 ...+.++.++.+.
T Consensus       170 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~  249 (337)
T d1gxra_         170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE  249 (337)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccc
Confidence            99999888877777777776665443221        1112221111100                 0112233344444


Q ss_pred             EcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEE
Q 011126          368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS  446 (493)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~s  446 (493)
                      +|+..     .........|...|++++|+|++ +|++++.|++|++||+.+++++..+.|...|++++|+| ++++|++
T Consensus       250 i~d~~-----~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t  323 (337)
T d1gxra_         250 VLHVN-----KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV-DDKYIVT  323 (337)
T ss_dssp             EEETT-----SSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEE
T ss_pred             ccccc-----ccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeC-CCCEEEE
Confidence            44433     23345677899999999999999 99999999999999999999999999999999999999 9999999


Q ss_pred             EeCCCeEEEEeC
Q 011126          447 GSIDGKVRIWEV  458 (493)
Q Consensus       447 gs~Dg~V~IWdl  458 (493)
                      |+.||+|+|||+
T Consensus       324 ~s~D~~I~vWdl  335 (337)
T d1gxra_         324 GSGDKKATVYEV  335 (337)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EeCCCeEEEEEE
Confidence            999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=5.3e-24  Score=206.53  Aligned_cols=246  Identities=19%  Similarity=0.276  Sum_probs=172.3

Q ss_pred             ccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC
Q 011126          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (493)
Q Consensus       227 ~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (493)
                      +..++.+|.+.+.. ++++++++||+|+.||+|+|||+.+..       ..+++.+|.++|++|+|+|+ .+|++|+.|+
T Consensus         4 ~~~tL~GH~~~vit-c~~~~~~~l~tgs~Dg~i~vWd~~~~~-------~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~   74 (355)
T d1nexb2           4 QRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAHG-GILVSGSTDR   74 (355)
T ss_dssp             EEEEEECCSSSCEE-EEEEETTEEEEEETTTEEEEEETTTTE-------EEEEEECCSSCEEEEEEETT-TEEEEEETTC
T ss_pred             CcEEECCcCCCcEE-EEEECCCEEEEEeCCCeEEEEECCCCc-------EEEEEECCCCCEEEEEEcCC-CEEEEEeccc
Confidence            34457778777632 456678999999999999999987543       34568899999999999985 5899999999


Q ss_pred             cEEEEecCCCeeeeeeeccCCCCceEEEeeCCC----------CceeeeeccCccc------------------------
Q 011126          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL----------SQLIPIDVDKEKI------------------------  352 (493)
Q Consensus       307 ~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~------------------------  352 (493)
                      +|++|++...+......................          ..+..++......                        
T Consensus        75 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence            999999988877655544433322222211111          1111111111000                        


Q ss_pred             ---------------cceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEEC
Q 011126          353 ---------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV  416 (493)
Q Consensus       353 ---------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~  416 (493)
                                     .....+.+..+..+.+|+...    .+.+....++...+.++.|+|++ ++++++.|++|++||+
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  230 (355)
T d1nexb2         155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ----MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL  230 (355)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             eeeeeccccccccccccceeeeecccceeeeeeccc----ccceeeeeccccccccccccccceeeecccccceEEeeec
Confidence                           000112233334444444332    23466677889999999999998 9999999999999999


Q ss_pred             CCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEE-EEccCCCEEEEee
Q 011126          417 GIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAV-CYCPDGKVRQNSA  489 (493)
Q Consensus       417 ~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv-~~spdG~~l~s~s  489 (493)
                      .++.++..+. |...|++++|+|   ++|++|+.||+|++||+++....... |...+.++ +++|+++++++|+
T Consensus       231 ~~~~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~  301 (355)
T d1nexb2         231 ENGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS  301 (355)
T ss_dssp             TTCCEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEEE-ECTTCCCCCEEEECSSEEEEEE
T ss_pred             ccccccccccccccccccccccc---ceeeeeecccccccccccccceeccc-ccCCceEEEEEcCCCCEEEEEe
Confidence            9999998886 999999999965   79999999999999999988655333 33444444 5677888776664

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.2e-24  Score=212.52  Aligned_cols=239  Identities=17%  Similarity=0.210  Sum_probs=175.5

Q ss_pred             cccccceecc--CCCeEEeeecCCeEEEEECCCcccccc-ccccceeeecccCCEEEEEEccCCCEEEEEEC--CCcEEE
Q 011126          236 DRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRELS-SLYTGQEFLAHEGSILTMKFSLDGQYLASGGE--DGTVRV  310 (493)
Q Consensus       236 ~~~~~~~fsp--~g~~lasgs~dg~V~vwd~~~~~~~~~-~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~V~i  310 (493)
                      ..+.+++|+|  ++.+||+|+.||+|+||++........ .......+..|.++|.+++|++++++|++++.  ++.+++
T Consensus        64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~  143 (325)
T d1pgua1          64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF  143 (325)
T ss_dssp             SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred             CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEE
Confidence            4567799998  567999999999999999865443221 11222346789999999999999999988764  678999


Q ss_pred             EecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCC
Q 011126          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (493)
                      |++.+++.+..+..+...+.++.+.+.....               .+..+.++.+.+|+........ ......+|...
T Consensus       144 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~---------------~~~~~~d~~v~~~d~~~~~~~~-~~~~~~~~~~~  207 (325)
T d1pgua1         144 ISWDSGNSLGEVSGHSQRINACHLKQSRPMR---------------SMTVGDDGSVVFYQGPPFKFSA-SDRTHHKQGSF  207 (325)
T ss_dssp             EETTTCCEEEECCSCSSCEEEEEECSSSSCE---------------EEEEETTTEEEEEETTTBEEEE-EECSSSCTTCC
T ss_pred             Eeecccccceeeeecccccccccccccccce---------------EEEeecccccccccccccccce-ecccccCCCCc
Confidence            9999999888888777777777766544322               2344556677777665443321 12234568889


Q ss_pred             EeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEc---cCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN---PVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       391 V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fs---p~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      |++++|+|++  +|++++.|+.|++||+++++++..+. |...+.++.|+   | ++++|++++.|+.|+|||+++++++
T Consensus       208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeecc-CCCEEEEEeCCCeEEEEECCCCCEE
Confidence            9999999974  89999999999999999999999886 66655544444   5 7899999999999999999999887


Q ss_pred             E-ecCCCC--CeEEE--EEccCCCEEEEeecCC
Q 011126          465 D-YTDIRE--IVSAV--CYCPDGKVRQNSACNF  492 (493)
Q Consensus       465 ~-~~~~~~--~I~sv--~~spdG~~l~s~s~d~  492 (493)
                      . +..+..  .+..+  .+.+++ +|++++.|+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg  318 (325)
T d1pgua1         287 QKWTLDKQQLGNQQVGVVATGNG-RIISLSLDG  318 (325)
T ss_dssp             EEEECCTTCGGGCEEEEEEEETT-EEEEEETTS
T ss_pred             EEEEecCCcccCeEEEEEECCCC-EEEEEECCC
Confidence            4 333333  33344  444444 677777664

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.3e-24  Score=207.32  Aligned_cols=244  Identities=13%  Similarity=0.154  Sum_probs=167.1

Q ss_pred             cccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC
Q 011126          226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (493)
Q Consensus       226 ~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D  305 (493)
                      +.+..+.+|...+.+++|+|    |++|+.||+|++|+..+.            ..+|...|.++.|++++ .+++++.|
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~------------~~~h~~~V~~~~~~~~~-~~~s~s~D   66 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM------------HQDHSNLIVSLDNSKAQ-EYSSISWD   66 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE------------ECCCCSCEEEEECCSTT-CCEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC------------CCCCCCCEEEEEecCCC-eEEEEeec
Confidence            34557889999999999988    999999999999997632            35799999999998765 57899999


Q ss_pred             CcEEEEecCCCee---eeeeeccCCCCceEEEeeCCCCceeeeeccCcccc----------------ceeeeecCCCceE
Q 011126          306 GTVRVWKVIEHER---LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID----------------KTKSLRKSSDLTC  366 (493)
Q Consensus       306 g~V~iWdl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~s~~~~~  366 (493)
                      ++|++|++...+.   ...+.....  ...... .....+..+........                ....+....+..+
T Consensus        67 ~~v~~w~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v  143 (287)
T d1pgua2          67 DTLKVNGITKHEFGSQPKVASANND--GFTAVL-TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI  143 (287)
T ss_dssp             TEEEETTEEEEECSSCEEEEEECSS--SEEEEE-ETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCE
T ss_pred             cccccccccccccccceeeeeeccC--CceEEE-eecccceeeeccceeeeeeccccceeeeeeccCcceeeecccccee
Confidence            9999999865332   111111111  011111 11111111111111110                0111122222344


Q ss_pred             EEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe--cCCCcEEEEEEccC----
Q 011126          367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV----  439 (493)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~--~h~~~V~~v~fsp~----  439 (493)
                      .+|+......   .......|...|++++|+|++ +|++|+.|+.|++||+.++..+...  .|...|++++|+|.    
T Consensus       144 ~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         144 QVFKLSDLEV---SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             EEEETTEEEE---EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             eeeeccccce---eeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccccc
Confidence            4444332211   111223478899999999999 9999999999999999998876543  38999999999872    


Q ss_pred             -----CCCEEEEEeCCCeEEEEeCCC-CeEE-EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          440 -----DDNYFISGSIDGKVRIWEVRR-CQVV-DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       440 -----d~~~l~sgs~Dg~V~IWdl~~-~~~~-~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                           ++.+|++|+.|++|+|||+++ .+.+ .+..|...|++++|+|+++ |++++.|++
T Consensus       221 ~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~  280 (287)
T d1pgua2         221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADAC  280 (287)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSC
T ss_pred             ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCCe
Confidence                 457899999999999999976 4444 4678999999999999874 778887764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.9e-23  Score=193.43  Aligned_cols=233  Identities=23%  Similarity=0.381  Sum_probs=166.6

Q ss_pred             eeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeee
Q 011126          242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG  321 (493)
Q Consensus       242 ~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~  321 (493)
                      ++++++++||+|+.||+|+|||+.+..       ..+++.+|.+.|++|+|  ++++|++|+.|+.|++|++..+.....
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~-------~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~   90 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTLE-------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT   90 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCC-------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCCc-------EEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccc
Confidence            467789999999999999999987543       34568899999999987  578999999999999999988876655


Q ss_pred             eeccCCCCceE------EEeeCCCCceeeeeccCccc-------------------cceeeeecCCCceEEEcCCCceee
Q 011126          322 FDVQDTDPSCL------YFTINHLSQLIPIDVDKEKI-------------------DKTKSLRKSSDLTCVVLPPKVFRL  376 (493)
Q Consensus       322 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~s~~~~~~~~~~~~~~~  376 (493)
                      ...........      .........+..........                   ........+.++.+.+|+....  
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~--  168 (293)
T d1p22a2          91 LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC--  168 (293)
T ss_dssp             ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTC--
T ss_pred             ccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCC--
Confidence            44332211110      01111111111111111000                   0111234455666777766543  


Q ss_pred             cccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEE
Q 011126          377 LEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (493)
Q Consensus       377 ~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~I  455 (493)
                        +++..+.+|...|..+.+++. ++++++.|++|++||+++...+..+. |...+.++  .+ ++.+|++|+.||.|+|
T Consensus       169 --~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~--~~-~~~~l~sg~~dg~i~i  242 (293)
T d1p22a2         169 --EFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RF-DNKRIVSGAYDGKIKV  242 (293)
T ss_dssp             --CEEEEEECCSSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--EC-CSSEEEEEETTSCEEE
T ss_pred             --cEEEEEcccccccccccCCCC-eEEEecCCCEEEEEecccceeeeeecccceeeeec--cc-cceEEEEEcCCCEEEE
Confidence              456778899999999888754 89999999999999999999988886 66777654  44 6789999999999999


Q ss_pred             EeCCCC---------e-EEEecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          456 WEVRRC---------Q-VVDYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       456 Wdl~~~---------~-~~~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      ||+...         . +..+..|...|++++|  ++++|++++.|++
T Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~  288 (293)
T d1p22a2         243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT  288 (293)
T ss_dssp             EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE
T ss_pred             EECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCE
Confidence            997532         2 3357889999999998  5678999998863

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.3e-23  Score=205.21  Aligned_cols=232  Identities=18%  Similarity=0.208  Sum_probs=165.6

Q ss_pred             cccceeccCCCeEEeeecCC-eEEEEECCCccccccccccceeeeccc-CCEEEEEEcc--CCCEEEEEECCCcEEEEec
Q 011126          238 HGSATLKPGDHELTLGQRMR-RVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSL--DGQYLASGGEDGTVRVWKV  313 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg-~V~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fsp--dg~~Lasgs~Dg~V~iWdl  313 (493)
                      ..+++|+|+++.||.++.+. .|+.|+.....     ......+.+|. ..|++++|+|  +|.+|++|+.||+|+|||+
T Consensus        20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~-----~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~   94 (325)
T d1pgua1          20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK-----VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW   94 (325)
T ss_dssp             CCCCEEETTTTEEEEEETTEEEEEECCSSCCS-----SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC-----ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeee
Confidence            45689999999999886544 34555543222     12234567774 6799999998  6789999999999999999


Q ss_pred             CCCeeeeee--------eccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          314 IEHERLDGF--------DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       314 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      ..++....+        ..+...+.++.|.+++...              .......+....+|....    .+.+..+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~  156 (325)
T d1pgua1          95 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL--------------CVVGEGRDNFGVFISWDS----GNSLGEVS  156 (325)
T ss_dssp             EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEE--------------EEEECCSSCSEEEEETTT----CCEEEECC
T ss_pred             cCCcceeeeecccccccccccCcEEEEEECCCCCcc--------------ceeeccccceEEEEeecc----cccceeee
Confidence            765443322        2233333444443322111              111222233333333321    24567788


Q ss_pred             cCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      +|...|++++|+|++  ++++++.|+.|++||+...+....+.    |...|++++|+|..+.+|++++.||.|++||++
T Consensus       157 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~  236 (325)
T d1pgua1         157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  236 (325)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec
Confidence            999999999999987  67899999999999999887766653    778899999999557899999999999999999


Q ss_pred             CCeEEE-ecCCCCCeEEEEEc---cCCCEEEEeecCC
Q 011126          460 RCQVVD-YTDIREIVSAVCYC---PDGKVRQNSACNF  492 (493)
Q Consensus       460 ~~~~~~-~~~~~~~I~sv~~s---pdG~~l~s~s~d~  492 (493)
                      +++.+. +..|...+..+.|+   |||++|++++.|+
T Consensus       237 ~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~  273 (325)
T d1pgua1         237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA  273 (325)
T ss_dssp             TCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS
T ss_pred             cccccccccccccccccceeeeeccCCCEEEEEeCCC
Confidence            998874 56677776666665   7899999999875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=8.6e-23  Score=197.40  Aligned_cols=217  Identities=18%  Similarity=0.350  Sum_probs=160.4

Q ss_pred             cceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceee--------eec
Q 011126          276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIP--------IDV  347 (493)
Q Consensus       276 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~  347 (493)
                      ..++|+||++.|++|+|+|++++||||+.||+|+|||+.+++.+..+..+...+.++.+.+++...+..        ...
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence            345789999999999999999999999999999999999999999999888888888876654322111        110


Q ss_pred             cCcccc--ceeeeecCCCce----------EEEc--CCCceee---cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCC
Q 011126          348 DKEKID--KTKSLRKSSDLT----------CVVL--PPKVFRL---LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK  409 (493)
Q Consensus       348 ~~~~~~--~~~~~~~s~~~~----------~~~~--~~~~~~~---~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg  409 (493)
                      ......  ....+.+.....          ....  +......   ..........+...+....+.+.+ ++++++.|+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  206 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA  206 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTT
T ss_pred             cccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCc
Confidence            000000  000000000000          0000  0000000   112234455677888999999988 999999999


Q ss_pred             eEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE---ecCCCCCeEEEEEccCCCEE
Q 011126          410 TVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YTDIREIVSAVCYCPDGKVR  485 (493)
Q Consensus       410 ~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~---~~~~~~~I~sv~~spdG~~l  485 (493)
                      .|++||+++++++..+. |...|++++|+| ++++|++|+.||.|++||++..+.+.   ...+...|++++|+|+|++|
T Consensus       207 ~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
T d1tbga_         207 SAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             EEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEE
T ss_pred             eEEEEECCCCcEEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEE
Confidence            99999999999999886 999999999999 99999999999999999999887663   35667789999999999999


Q ss_pred             EEeecCCC
Q 011126          486 QNSACNFC  493 (493)
Q Consensus       486 ~s~s~d~~  493 (493)
                      ++|+.|++
T Consensus       286 ~~g~~dg~  293 (340)
T d1tbga_         286 LAGYDDFN  293 (340)
T ss_dssp             EEEETTSC
T ss_pred             EEEECCCE
Confidence            99988763

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.7e-23  Score=209.59  Aligned_cols=248  Identities=11%  Similarity=0.074  Sum_probs=165.3

Q ss_pred             eeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEc------c-CCCEEEEEE
Q 011126          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS------L-DGQYLASGG  303 (493)
Q Consensus       231 ~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs------p-dg~~Lasgs  303 (493)
                      ..+|...|.+++++  ++++++++.|++|+||+.......... ........|...+..+...      . ++.++++++
T Consensus        10 ~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_          10 GKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPK-DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             SSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGG-GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             CCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCccc-ceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            34677777777765  469999999999999997654432221 1122234455554433331      1 345788999


Q ss_pred             CCCcEEEEecCCCeeeeeeecc-----C-----CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc
Q 011126          304 EDGTVRVWKVIEHERLDGFDVQ-----D-----TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV  373 (493)
Q Consensus       304 ~Dg~V~iWdl~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  373 (493)
                      .||.|++|++........+...     .     .....+.+.           ..............+.++.+.+|+...
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~dg~i~vw~~~~  155 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG-----------ASNDRLLSHRLVATDVKGTTYIWKFHP  155 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEE-----------CCC----CEEEEEEETTSCEEEEEEES
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEe-----------cCCCcccccEEEEEcCCCcEEEEEeec
Confidence            9999999998654322211110     0     001111111           111112223334555666777765421


Q ss_pred             eeec--------------ccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-------CCCcEE
Q 011126          374 FRLL--------------EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-------HNNYVT  432 (493)
Q Consensus       374 ~~~~--------------~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-------h~~~V~  432 (493)
                      ....              .........+...+++++|+|+++|++|+.|++|+|||+.+++++..+.       |..+|+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~  235 (393)
T d1sq9a_         156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR  235 (393)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred             CCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEE
Confidence            1100              0111122345667899999999999999999999999999998877653       889999


Q ss_pred             EEEEccCCCCEEEEEeCCC---eEEEEeCCCCeEEE-e-------------cCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          433 SVAFNPVDDNYFISGSIDG---KVRIWEVRRCQVVD-Y-------------TDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       433 ~v~fsp~d~~~l~sgs~Dg---~V~IWdl~~~~~~~-~-------------~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                      +++|+| ++++|++|+.|+   .|++||+.+++.+. +             .+|...|++++|+|||++|++++.|++
T Consensus       236 ~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~  312 (393)
T d1sq9a_         236 SVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK  312 (393)
T ss_dssp             EEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             Eccccc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCE
Confidence            999999 999999999987   49999999887653 2             368999999999999999999998863

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.7e-22  Score=200.66  Aligned_cols=240  Identities=13%  Similarity=0.100  Sum_probs=175.5

Q ss_pred             ceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEE
Q 011126          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (493)
Q Consensus       230 ~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~  309 (493)
                      .+.+|.+.+.+++|+|++++|++|+.|++|+||++......     ....+.+|...|++++|+|++++|++|+.|++|+
T Consensus        46 ~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~-----~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~  120 (371)
T d1k8kc_          46 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK-----PTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS  120 (371)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE-----EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc-----cccccccccccccccccccccccceeecccCcce
Confidence            45567788899999999999999999999999998754322     2234567999999999999999999999999999


Q ss_pred             EEecCCCeeeeeee----ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceee---------
Q 011126          310 VWKVIEHERLDGFD----VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL---------  376 (493)
Q Consensus       310 iWdl~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~---------  376 (493)
                      +|++..........    .+...+.++.+.++.  .              ..+.++.++.+.+|+......         
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--~--------------~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~  184 (371)
T d1k8kc_         121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS--V--------------LLAAGSCDFKCRIFSAYIKEVEERPAPTPW  184 (371)
T ss_dssp             EEEEETTTTEEEEEEECTTCCSCEEEEEECTTS--S--------------EEEEEETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred             eeeeecccccccccccccccccccccccccccc--c--------------ceeccccCcEEEEEeeccCccccccccccc
Confidence            99987655332222    223334444443322  1              123445566666665432111         


Q ss_pred             -----cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeC
Q 011126          377 -----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI  449 (493)
Q Consensus       377 -----~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~  449 (493)
                           ....+....+|...|.+++|+|++ +|++++.|++|++||+..+.++..+. |..+|++++|+| ++.+|++| .
T Consensus       185 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~g-~  262 (371)
T d1k8kc_         185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAG-H  262 (371)
T ss_dssp             BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEE-T
T ss_pred             cccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecC-CCCEEEEE-c
Confidence                 123456677899999999999999 99999999999999999999988886 888999999999 88877765 4


Q ss_pred             CCeEEEEeCC--CCeEEE----------------------------------------ecCCCCCeEEEEEccCCC----
Q 011126          450 DGKVRIWEVR--RCQVVD----------------------------------------YTDIREIVSAVCYCPDGK----  483 (493)
Q Consensus       450 Dg~V~IWdl~--~~~~~~----------------------------------------~~~~~~~I~sv~~spdG~----  483 (493)
                      |+.+++|...  .+.+..                                        ...|.+.|+++++.|.+.    
T Consensus       263 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~  342 (371)
T d1k8kc_         263 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS  342 (371)
T ss_dssp             TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS
T ss_pred             CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceE
Confidence            7766665543  222110                                        012778899999988653    


Q ss_pred             EEEEeecCC
Q 011126          484 VRQNSACNF  492 (493)
Q Consensus       484 ~l~s~s~d~  492 (493)
                      .+++++.|+
T Consensus       343 ~~~T~g~Dg  351 (371)
T d1k8kc_         343 QFCTTGMDG  351 (371)
T ss_dssp             EEEEEETTS
T ss_pred             EEEEEcCCC
Confidence            578888775

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=7.1e-24  Score=212.43  Aligned_cols=184  Identities=18%  Similarity=0.303  Sum_probs=143.2

Q ss_pred             CCeEEeeecCCeEEEEECCCcccccccc-----------ccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCC
Q 011126          247 DHELTLGQRMRRVRVHPVKKQSRELSSL-----------YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (493)
Q Consensus       247 g~~lasgs~dg~V~vwd~~~~~~~~~~~-----------~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~  315 (493)
                      +.++++++.||.|++|++..........           ........+...+++++|+|++ +||+|+.||+|+|||+.+
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~  214 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST  214 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc
Confidence            5689999999999999975432211100           0111223456679999999998 899999999999999998


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      ++.+..+..                                                        ...+.+|...|.+|+
T Consensus       215 ~~~~~~~~~--------------------------------------------------------~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         215 LRPLYNFES--------------------------------------------------------QHSMINNSNSIRSVK  238 (393)
T ss_dssp             TEEEEEEEC--------------------------------------------------------CC---CCCCCEEEEE
T ss_pred             ccccccccc--------------------------------------------------------ccccccccceEEEcc
Confidence            876554432                                                        234568999999999


Q ss_pred             EeCCC-eEEEEeCCCe---EEEEECCCCcEEEEe--------------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEe
Q 011126          396 WSKNG-FLLSSSADKT---VRLWQVGIDRCLRVF--------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (493)
Q Consensus       396 ~sp~g-~l~sgs~Dg~---V~lWd~~~~~~~~~~--------------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWd  457 (493)
                      |+|+| +|++|+.|++   |+|||+.+++++..+              .|.+.|++++|+| ++++|++|+.|++|+|||
T Consensus       239 ~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEE
T ss_pred             cccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEE
Confidence            99999 9999999874   999999999888776              3889999999999 999999999999999999


Q ss_pred             CCCCeEEE-ecCCCCCeE----EEEEccCCCEEEEe
Q 011126          458 VRRCQVVD-YTDIREIVS----AVCYCPDGKVRQNS  488 (493)
Q Consensus       458 l~~~~~~~-~~~~~~~I~----sv~~spdG~~l~s~  488 (493)
                      +.+++++. +.+|...|.    .++|+|+|..++++
T Consensus       318 ~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         318 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             CCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            99999884 677776654    46677777665433

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.89  E-value=1.3e-21  Score=187.12  Aligned_cols=270  Identities=13%  Similarity=0.125  Sum_probs=181.1

Q ss_pred             hhhhhccccccCC---CcccccccccCCCCCCccccccCCccccccccchhhhhhhhccccccccCceeeeeccccccee
Q 011126          167 EIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATL  243 (493)
Q Consensus       167 ~~~~~~~lr~v~~---~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k~~w~~~~~~~~~~~~~~~~~~f  243 (493)
                      ||.+.  |..+.+   |+.|+.+..++++.     +|.+......             ..      ....|...+.+++|
T Consensus        10 GH~~~--V~~l~~s~dg~~l~s~s~Dg~v~-----vWd~~~~~~~-------------~~------~~~~h~~~v~~v~~   63 (299)
T d1nr0a2          10 GHNKA--ITALSSSADGKTLFSADAEGHIN-----SWDISTGISN-------------RV------FPDVHATMITGIKT   63 (299)
T ss_dssp             CCSSC--EEEEEECTTSSEEEEEETTSCEE-----EEETTTCCEE-------------EC------SSCSCSSCEEEEEE
T ss_pred             CCCCC--cEEEEECCCCCEEEEEcCCCeEE-----EEECCCCcEE-------------EE------EcCCCCCcEEEEEe
Confidence            45554  555554   67777777777776     7765432100             00      01235567778999


Q ss_pred             ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeee
Q 011126          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD  323 (493)
Q Consensus       244 sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~  323 (493)
                      +|++.++ +++.|+.+++|+.........    ......|...+.+++|+|+++++++++ ++.+++|+......   ..
T Consensus        64 ~~~g~~~-~~~~d~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~---~~  134 (299)
T d1nr0a2          64 TSKGDLF-TVSWDDHLKVVPAGGSGVDSS----KAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTE---VP  134 (299)
T ss_dssp             CTTSCEE-EEETTTEEEEECSSSSSSCTT----SCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEE---EE
T ss_pred             eccceee-cccceeeEEEeccCCcccccc----ccccccccccccccccccccccccccc-cccccccccccccc---cc
Confidence            9999755 556799999999875432211    112456788999999999999877665 56899998543221   11


Q ss_pred             ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eE
Q 011126          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL  402 (493)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l  402 (493)
                      . .....++.+.++.                ...+.++.++.+.+|+.......   ......|...|++++|+|++ +|
T Consensus       135 ~-~~~~~~~~~s~~~----------------~~l~~g~~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l  194 (299)
T d1nr0a2         135 I-SYNSSCVALSNDK----------------QFVAVGGQDSKVHVYKLSGASVS---EVKTIVHPAEITSVAFSNNGAFL  194 (299)
T ss_dssp             C-SSCEEEEEECTTS----------------CEEEEEETTSEEEEEEEETTEEE---EEEEEECSSCEEEEEECTTSSEE
T ss_pred             c-ccccccccccccc----------------ccccccccccccccccccccccc---ccccccccccccccccccccccc
Confidence            1 1122333333221                12234455666777664322211   12345689999999999998 99


Q ss_pred             EEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCe---EEEecCC-CCCeE
Q 011126          403 LSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ---VVDYTDI-REIVS  474 (493)
Q Consensus       403 ~sgs~Dg~V~lWd~~~~~~~~~~~----h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~---~~~~~~~-~~~I~  474 (493)
                      ++++.|+.|++||+.++..+....    |...|++++|+| ++.+|++|+.||.|+|||+.++.   ......+ ...|+
T Consensus       195 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  273 (299)
T d1nr0a2         195 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN  273 (299)
T ss_dssp             EEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEE
Confidence            999999999999998877654432    889999999999 99999999999999999998753   2233333 44566


Q ss_pred             EEEEccCCCEEEEeecCCC
Q 011126          475 AVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       475 sv~~spdG~~l~s~s~d~~  493 (493)
                      .+. +|++++|++++.|+.
T Consensus       274 ~~~-~~~~~~l~s~s~D~~  291 (299)
T d1nr0a2         274 SVI-WLNETTIVSAGQDSN  291 (299)
T ss_dssp             EEE-EEETTEEEEEETTSC
T ss_pred             EEE-ECCCCEEEEEeCCCE
Confidence            664 567789999988763

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.5e-21  Score=187.41  Aligned_cols=293  Identities=18%  Similarity=0.132  Sum_probs=194.2

Q ss_pred             CcceeeeecCCCceeEEccCCCchhhhhccccccCC--CcccccccccCCCCCCccccccCCccccccccchhhhhhhhc
Q 011126          144 HAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS--SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVK  221 (493)
Q Consensus       144 ~~~~~~~~ld~g~~~v~~~~~~~~~~~~~~lr~v~~--~~~l~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~~~~k  221 (493)
                      +...+|+|+.+|+....-    .+|...  |..+.+  +..|.....++++.     +|.+.........          
T Consensus        32 Dg~i~vWd~~~~~~~~~l----~~H~~~--V~~l~~s~~~~l~s~s~D~~i~-----iw~~~~~~~~~~~----------   90 (355)
T d1nexb2          32 DKMIRVYDSINKKFLLQL----SGHDGG--VWALKYAHGGILVSGSTDRTVR-----VWDIKKGCCTHVF----------   90 (355)
T ss_dssp             TTEEEEEETTTTEEEEEE----ECCSSC--EEEEEEETTTEEEEEETTCCEE-----EEETTTTEEEEEE----------
T ss_pred             CCeEEEEECCCCcEEEEE----ECCCCC--EEEEEEcCCCEEEEEecccccc-----ccccccccccccc----------
Confidence            445899999998765432    134443  555554  55677777776666     6654432111000          


Q ss_pred             cccccccCceeeeecccccceeccCCCeEEeeecCCeEEEEECCCccccccc----------------cccceeeecccC
Q 011126          222 RGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS----------------LYTGQEFLAHEG  285 (493)
Q Consensus       222 ~~w~~~~~~~~~~~~~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~----------------~~~~~~l~~H~~  285 (493)
                              .............+++++.++++++.|+.|++|++.........                .........|..
T Consensus        91 --------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T d1nexb2          91 --------EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  162 (355)
T ss_dssp             --------CCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS
T ss_pred             --------ccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc
Confidence                    00001111223567889999999999999999998764321110                001112334555


Q ss_pred             CEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCce
Q 011126          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT  365 (493)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  365 (493)
                      .|..  +.+++++++++..|+.|++||+.+++.+..............+.+...                ....++.++.
T Consensus       163 ~v~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~d~~  224 (355)
T d1nexb2         163 SVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK----------------RCISASMDTT  224 (355)
T ss_dssp             CEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT----------------EEEEEETTSC
T ss_pred             cccc--cccccceeeeecccceeeeeecccccceeeeeccccccccccccccce----------------eeecccccce
Confidence            5554  445788999999999999999999988777766555544444443321                1233445666


Q ss_pred             EEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEE-EEccCCCCEE
Q 011126          366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV-AFNPVDDNYF  444 (493)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v-~fsp~d~~~l  444 (493)
                      +.+|+....    ..+..+.+|...|.+++|+++ +|++++.|++|++||+.+........+ ..+.++ .++| ++.+|
T Consensus       225 i~i~d~~~~----~~~~~~~~h~~~v~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l  297 (355)
T d1nexb2         225 IRIWDLENG----ELMYTLQGHTALVGLLRLSDK-FLVSAAADGSIRGWDANDYSRKFSYHH-TNLSAITTFYV-SDNIL  297 (355)
T ss_dssp             EEEEETTTC----CEEEEECCCSSCCCEEEECSS-EEEEECTTSEEEEEETTTCCEEEEEEC-TTCCCCCEEEE-CSSEE
T ss_pred             EEeeecccc----ccccccccccccccccccccc-eeeeeecccccccccccccceeccccc-CCceEEEEEcC-CCCEE
Confidence            777765543    346778899999999999764 999999999999999998876655544 445554 4566 77777


Q ss_pred             EEEeCCCeEEEEeCCCCeEEE--ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          445 ISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       445 ~sgs~Dg~V~IWdl~~~~~~~--~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ++|+ ||+|+|||+++++++.  +..|...|++++|+|+. .+++++.|+
T Consensus       298 ~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~-~~~~~s~dg  345 (355)
T d1nexb2         298 VSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDG  345 (355)
T ss_dssp             EEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTE-EEEEEESSS
T ss_pred             EEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCe-EEEEEECCC
Confidence            7665 8999999999999873  57788999999999873 566666564

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.84  E-value=5.3e-20  Score=179.37  Aligned_cols=178  Identities=9%  Similarity=0.112  Sum_probs=150.8

Q ss_pred             ceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC--cEEEEecCCCe
Q 011126          241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKVIEHE  317 (493)
Q Consensus       241 ~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--~V~iWdl~~~~  317 (493)
                      -.|+| ||+++|+++ .|.|+||+.......        . .+|...|.+++|+|||++|++++.+.  .|++||+.+++
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~--------~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~   77 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL--------K-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK   77 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSSBEE--------E-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred             ccccCCCCCEEEEEE-CCeEEEEECCCCcEE--------E-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc
Confidence            46999 999999986 479999998754321        1 26999999999999999998877653  79999987654


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (493)
                      .                                                               ..+..|...|.+++|+
T Consensus        78 ~---------------------------------------------------------------~~~~~~~~~v~~~~~s   94 (360)
T d1k32a3          78 A---------------------------------------------------------------EKFEENLGNVFAMGVD   94 (360)
T ss_dssp             E---------------------------------------------------------------EECCCCCCSEEEEEEC
T ss_pred             E---------------------------------------------------------------EEeeCCCceEEeeeec
Confidence            2                                                               2345688999999999


Q ss_pred             CCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEe----------CCCeEEEEeCCCCeEEE
Q 011126          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS----------IDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs----------~Dg~V~IWdl~~~~~~~  465 (493)
                      |++ +|++++.++.+++|++.++++...+. |...+.+++|+| ++++|+.+.          .++.+++||+.+++...
T Consensus        95 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~  173 (360)
T d1k32a3          95 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA  173 (360)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred             ccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceee
Confidence            999 99999999999999999999888876 788899999999 999998654          34579999999999998


Q ss_pred             ecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          466 YTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       466 ~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      ...+...+..++|+|||+.|++++.+.
T Consensus       174 ~~~~~~~~~~~~~spdg~~l~~~s~~~  200 (360)
T d1k32a3         174 ATTENSHDYAPAFDADSKNLYYLSYRS  200 (360)
T ss_dssp             CSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred             ecccccccccccccCCCCEEEEEeCCC
Confidence            888889999999999999999887653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1e-19  Score=172.74  Aligned_cols=151  Identities=13%  Similarity=0.277  Sum_probs=120.3

Q ss_pred             ccceeccCCCeEEeeecCC-eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCe
Q 011126          239 GSATLKPGDHELTLGQRMR-RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (493)
Q Consensus       239 ~~~~fsp~g~~lasgs~dg-~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~  317 (493)
                      ...+++|++..+++++.++ .|++|++........      ....|.+.|++|+|+|++.+|++|+.||.|++||+.++.
T Consensus       122 ~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~  195 (287)
T d1pgua2         122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD------LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE  195 (287)
T ss_dssp             CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE------CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             eeeeeeccCcceeeeccccceeeeeeccccceeee------eeeccCCceeEEEeccCccccccccccccccceeecccc
Confidence            3467899999998888775 799999864432221      123578899999999999999999999999999997765


Q ss_pred             eeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (493)
                      ...                                                             ..+.+|...|.+++|+
T Consensus       196 ~~~-------------------------------------------------------------~~~~~h~~~v~~~~~~  214 (287)
T d1pgua2         196 VKT-------------------------------------------------------------SRWAFRTSKINAISWK  214 (287)
T ss_dssp             EEE-------------------------------------------------------------CCSCCCSSCEEEEEEC
T ss_pred             ccc-------------------------------------------------------------ccccccccccceeeec
Confidence            321                                                             1124578888888887


Q ss_pred             CC----------C-eEEEEeCCCeEEEEECCC-CcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeC
Q 011126          398 KN----------G-FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (493)
Q Consensus       398 p~----------g-~l~sgs~Dg~V~lWd~~~-~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl  458 (493)
                      |.          + +|++|+.|++|+|||++. .+.+..+. |...|++++|+| ++ .|++++.||+|++|++
T Consensus       215 p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred             ccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence            63          3 799999999999999976 45566554 999999999999 65 6899999999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.7e-19  Score=168.23  Aligned_cols=186  Identities=21%  Similarity=0.311  Sum_probs=143.1

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~  320 (493)
                      ....+....+++++.++.|++|+.....       ....+.+|...+..+.+  ++.+|++|+.||.|++||+..++.+.
T Consensus       141 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~  211 (342)
T d2ovrb2         141 RCVQYDGRRVVSGAYDFMVKVWDPETET-------CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH  211 (342)
T ss_dssp             EEEEECSSCEEEEETTSCEEEEEGGGTE-------EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             eeeccccceeeeecCCCeEEEeecccce-------eeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeee
Confidence            4556777889999999999999976433       23456788877766555  68899999999999999999998888


Q ss_pred             eeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe---cCCCCEeEEEEe
Q 011126          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ---GHSSEVLDLSWS  397 (493)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~s  397 (493)
                      .+..+.....++.+.  +                ...+.++.++.+.+|+......    ...+.   .|...+.+++++
T Consensus       212 ~~~~~~~~v~~~~~~--~----------------~~l~s~s~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~  269 (342)
T d2ovrb2         212 TLTGHQSLTSGMELK--D----------------NILVSGNADSTVKIWDIKTGQC----LQTLQGPNKHQSAVTCLQFN  269 (342)
T ss_dssp             EECCCCSCEEEEEEE--T----------------TEEEEEETTSCEEEEETTTCCE----EEEECSTTSCSSCEEEEEEC
T ss_pred             EecccccceeEEecC--C----------------CEEEEEcCCCEEEEEecccccc----cccccccceeeeceeecccC
Confidence            777665544333321  1                1234566777888887654332    33333   466778888776


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCcEEEEec------CCCcEEEEEEccCCCCEEEEEeCCCe----EEEEeCC
Q 011126          398 KNGFLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGK----VRIWEVR  459 (493)
Q Consensus       398 p~g~l~sgs~Dg~V~lWd~~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs~Dg~----V~IWdl~  459 (493)
                      ++ ++++|+.||+|+|||++++++++.+.      |...|++++|+| ++.+|++|+.||+    |++||+.
T Consensus       270 ~~-~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~-~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         270 KN-FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             SS-EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CC-eeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC-CCCEEEEEeCCCCCeeEEEEEeCC
Confidence            54 89999999999999999999988773      778899999999 9999999999985    9999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.81  E-value=1.6e-18  Score=168.65  Aligned_cols=237  Identities=7%  Similarity=-0.049  Sum_probs=168.4

Q ss_pred             eecccccceeccCCCeEEeeecCC--eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126          234 IIDRHGSATLKPGDHELTLGQRMR--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW  311 (493)
                      |...+.+++|+|+|++|++++.+.  .|++|+..+...        +.+..|...|.+++|+|+|++|++++.++.+++|
T Consensus        41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~--------~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~  112 (360)
T d1k32a3          41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA--------EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTV  112 (360)
T ss_dssp             CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE--------EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE--------EEeeCCCceEEeeeecccccccceeccccccccc
Confidence            456677899999999998876553  799999886542        2456799999999999999999999999999999


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      ++.+++....+..+......+.+++++...++.......      ......+..+.+|+...     .....+..|...+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~------~~~~~~~~~~~v~d~~~-----~~~~~~~~~~~~~  181 (360)
T d1k32a3         113 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG------ETDGYVMQAIHVYDMEG-----RKIFAATTENSHD  181 (360)
T ss_dssp             ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS------TTCSCCEEEEEEEETTT-----TEEEECSCSSSBE
T ss_pred             cccccceeeeeecccccccchhhccceeeeeeecccccc------ceeeccccceeeecccc-----Cceeeeccccccc
Confidence            999999888888888778888887776443322211111      11233344455555433     3344556678889


Q ss_pred             eEEEEeCCC-eEEEEeCCCeEEEEECCCCcE-------EEEec-------------------------------------
Q 011126          392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-------LRVFS-------------------------------------  426 (493)
Q Consensus       392 ~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~-------~~~~~-------------------------------------  426 (493)
                      ..++|+|+| +|++++.++.+++|+......       ...+.                                     
T Consensus       182 ~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  261 (360)
T d1k32a3         182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV  261 (360)
T ss_dssp             EEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSC
T ss_pred             ccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeeccc
Confidence            999999999 999999999999998653221       10000                                     


Q ss_pred             CCCcEEEEEEcc----------C--CCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecCC
Q 011126          427 HNNYVTSVAFNP----------V--DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACNF  492 (493)
Q Consensus       427 h~~~V~~v~fsp----------~--d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d~  492 (493)
                      .......+...+          .  ...++++++.++.|++||+.+++...+.   ..|++++|+|||++|++++.|+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~v~~~~~SpDG~~l~~~~~Dg  336 (360)
T d1k32a3         262 DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKDDG  336 (360)
T ss_dssp             CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEETTS
T ss_pred             CcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEec---CCcCEEEECCCCCEEEEEECCC
Confidence            011122333322          0  1124556667889999999998876543   4589999999999999998875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=4.4e-18  Score=162.74  Aligned_cols=217  Identities=16%  Similarity=0.084  Sum_probs=145.3

Q ss_pred             ceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeee---eeccCCCCceEEEeeCCCCceeeeeccC----
Q 011126          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG---FDVQDTDPSCLYFTINHLSQLIPIDVDK----  349 (493)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  349 (493)
                      .+..++|++.|++|+|+|++++||+|+.||+|+|||+.++.....   ...+...+.++.|.+.....++....+.    
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence            345689999999999999999999999999999999976543322   2246667778888776544443332221    


Q ss_pred             -----ccc-------------------cceeeeecCCCceEEEcCCCceeecccceEEEecC--CCCEeEEEEeCCC-eE
Q 011126          350 -----EKI-------------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH--SSEVLDLSWSKNG-FL  402 (493)
Q Consensus       350 -----~~~-------------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~g-~l  402 (493)
                           ...                   .....+..+.+..+.+|+.+..............+  ......+.+.+.+ .+
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL  163 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred             eecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence                 000                   00111233444555555543322222222222222  2234456667776 99


Q ss_pred             EEEeCCCeEEEEECCCCcEEEEe----cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeE---------E-----
Q 011126          403 LSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV---------V-----  464 (493)
Q Consensus       403 ~sgs~Dg~V~lWd~~~~~~~~~~----~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~---------~-----  464 (493)
                      ++++.|+.|++||+.........    .+...+.++.+.|.++..+++++.||.+.+|++.....         .     
T Consensus       164 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~  243 (342)
T d1yfqa_         164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL  243 (342)
T ss_dssp             EEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred             eeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeee
Confidence            99999999999999876543332    35566777777776889999999999999999864321         1     


Q ss_pred             --EecCCCCCeEEEEEccCCCEEEEeecCCC
Q 011126          465 --DYTDIREIVSAVCYCPDGKVRQNSACNFC  493 (493)
Q Consensus       465 --~~~~~~~~I~sv~~spdG~~l~s~s~d~~  493 (493)
                        ....|...|++++|+|++++|++|+.|++
T Consensus       244 ~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~  274 (342)
T d1yfqa_         244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             CTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred             ccCCCcccccceeEEecCCccEEEEECCCCE
Confidence              12346668999999999999999998864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.76  E-value=7.5e-18  Score=170.09  Aligned_cols=242  Identities=7%  Similarity=0.006  Sum_probs=144.2

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE-EECCCcEEEEecCC
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIE  315 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~V~iWdl~~  315 (493)
                      .+..++|+|||++|++++.|++|++||+.+......  ...+...+|.+.+.+++|+|||++|++ +..++.+++||..+
T Consensus        63 ~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~--~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2          63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV--AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE--EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEE--EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence            455699999999999999999999999986653221  112223467788888999999998755 45899999999999


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      +.....+..+........+........+....+..  ...  ........+..+.....   ........++...+..++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~--~~~--~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~  213 (426)
T d1hzua2         141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP--EFI--VNVKETGKVLLVNYKDI---DNLTVTSIGAAPFLADGG  213 (426)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS--EEE--EEETTTTEEEEEECSSS---SSCEEEEEECCSSEEEEE
T ss_pred             cceeEEeeccCCCccceeecCCCceeEEEECCCCC--EEE--EecCCCCeEEEEEeccc---cceeeEEeccCCccEeee
Confidence            98877766544333322222222111111111100  000  00111111111111000   001122234455555566


Q ss_pred             EeCCC-eEE-EEeCCCeEEEEECCCC------------------------------------------------------
Q 011126          396 WSKNG-FLL-SSSADKTVRLWQVGID------------------------------------------------------  419 (493)
Q Consensus       396 ~sp~g-~l~-sgs~Dg~V~lWd~~~~------------------------------------------------------  419 (493)
                      |+|++ +++ +...+..+.+|+..++                                                      
T Consensus       214 ~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~  293 (426)
T d1hzua2         214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW  293 (426)
T ss_dssp             ECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBT
T ss_pred             ECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccc
Confidence            66655 322 2233344444444322                                                      


Q ss_pred             cEEEEec-CCCcEEEEEEccCCCCEEEE-------EeCCCeEEEEeCCCCeEEE----------ecCCCCCeEEEEEccC
Q 011126          420 RCLRVFS-HNNYVTSVAFNPVDDNYFIS-------GSIDGKVRIWEVRRCQVVD----------YTDIREIVSAVCYCPD  481 (493)
Q Consensus       420 ~~~~~~~-h~~~V~~v~fsp~d~~~l~s-------gs~Dg~V~IWdl~~~~~~~----------~~~~~~~I~sv~~spd  481 (493)
                      +....+. |...+..++|+| ++++|++       ++.|++|+|||+.+++...          ...+...|.+++|+||
T Consensus       294 ~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD  372 (426)
T d1hzua2         294 KKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR  372 (426)
T ss_dssp             SEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSS
T ss_pred             eEeEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCC
Confidence            3333343 677889999999 9999994       5668999999999875431          2356677999999999


Q ss_pred             CCEEEEe
Q 011126          482 GKVRQNS  488 (493)
Q Consensus       482 G~~l~s~  488 (493)
                      |++++++
T Consensus       373 Gk~i~vs  379 (426)
T d1hzua2         373 GDEVWFS  379 (426)
T ss_dssp             SSEEEEE
T ss_pred             CCEEEEE
Confidence            9987654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.8e-16  Score=145.99  Aligned_cols=202  Identities=18%  Similarity=0.291  Sum_probs=141.9

Q ss_pred             eeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccC---------
Q 011126          279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK---------  349 (493)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  349 (493)
                      ....|...|+|+.|  ||++||||+.||+|+|||+.+++.+..+..+...+.++.+  ++ ..++....+.         
T Consensus        10 ~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~-~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2          10 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSS
T ss_pred             ccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--cc-ceeeccccccccccccccc
Confidence            34568889998765  7999999999999999999999999999888777766554  21 2222211111         


Q ss_pred             ccccc----------------eeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCCeEEEEeCCCeEEE
Q 011126          350 EKIDK----------------TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRL  413 (493)
Q Consensus       350 ~~~~~----------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~l~sgs~Dg~V~l  413 (493)
                      .....                ........++.+.+|+...... ......+..|...|..+.+.+. .+++++.|+.|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~d~~i~~  162 (293)
T d1p22a2          85 GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKV  162 (293)
T ss_dssp             CCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC-CEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEE
T ss_pred             ccccccccccccccccccccccceeecccccceeEeecccccc-ccccccccccccccccceeccc-ccccccCCCceee
Confidence            10000                0011222222333332221110 1224456678888988888765 7888999999999


Q ss_pred             EECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          414 WQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       414 Wd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ||+++++++..+. +...|..+.+++   .+|++++.||+|+|||+++.+.+. ...+...+..  +++++.+|++++.|
T Consensus       163 ~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~d  237 (293)
T d1p22a2         163 WNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYD  237 (293)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETT
T ss_pred             ecCCCCcEEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCC
Confidence            9999999988886 778888887754   789999999999999999988774 6667777754  67788999999877


Q ss_pred             C
Q 011126          492 F  492 (493)
Q Consensus       492 ~  492 (493)
                      +
T Consensus       238 g  238 (293)
T d1p22a2         238 G  238 (293)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=7.2e-16  Score=155.94  Aligned_cols=182  Identities=9%  Similarity=-0.029  Sum_probs=137.4

Q ss_pred             ccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeee
Q 011126          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD  323 (493)
Q Consensus       244 sp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~  323 (493)
                      +++.-++++.+.+|+|.|||....+       ....+..| ..+..++|+|||++|++++.|++|++||+.+++......
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~-------v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~  100 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYE-------IKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE  100 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCC-------EEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCc-------EEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEE
Confidence            3444456889999999999987544       23345556 469999999999999999999999999998765321111


Q ss_pred             ccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-e-
Q 011126          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F-  401 (493)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~-  401 (493)
                                                                               +....+|.+.+.+.+|+|+| + 
T Consensus       101 ---------------------------------------------------------i~~~~~~~~~~~s~~~SpDG~~l  123 (432)
T d1qksa2         101 ---------------------------------------------------------IKIGSEARSIETSKMEGWEDKYA  123 (432)
T ss_dssp             ---------------------------------------------------------EECCSEEEEEEECCSTTCTTTEE
T ss_pred             ---------------------------------------------------------EecCCCCCCeEEecccCCCCCEE
Confidence                                                                     11112344555666788999 4 


Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEec------------CCCcEEEEEEccCCCCEE-EEEeCCCeEEEEeCCCCeEE--Ee
Q 011126          402 LLSSSADKTVRLWQVGIDRCLRVFS------------HNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVV--DY  466 (493)
Q Consensus       402 l~sgs~Dg~V~lWd~~~~~~~~~~~------------h~~~V~~v~fsp~d~~~l-~sgs~Dg~V~IWdl~~~~~~--~~  466 (493)
                      +++++.+++|+|||..+++++..+.            +......+.++| ++.++ ++...++.|.+||..+.+..  ..
T Consensus       124 ~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~  202 (432)
T d1qksa2         124 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKETGKILLVDYTDLNNLKTTE  202 (432)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEETTCSSEEEEEE
T ss_pred             EEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEEccCCeEEEEEccCCCcceEEE
Confidence            5788999999999999999887653            455677899999 77655 56677899999999987644  34


Q ss_pred             cCCCCCeEEEEEccCCCEEEEeecC
Q 011126          467 TDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       467 ~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ..+...+..+.|+|||+++++++.+
T Consensus       203 i~~g~~~~~~~~spdg~~~~va~~~  227 (432)
T d1qksa2         203 ISAERFLHDGGLDGSHRYFITAANA  227 (432)
T ss_dssp             EECCSSEEEEEECTTSCEEEEEEGG
T ss_pred             EcccCccccceECCCCCEEEEeccc
Confidence            4566788999999999999888754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.68  E-value=3.6e-14  Score=133.80  Aligned_cols=222  Identities=11%  Similarity=0.105  Sum_probs=155.4

Q ss_pred             cccceeccCCCeE-EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEE-EECCCcEEEEecCC
Q 011126          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIE  315 (493)
Q Consensus       238 ~~~~~fsp~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~V~iWdl~~  315 (493)
                      ...++|+|+|++| +++..++.|++||+.+...       ...+..|. .+..+.|++++.+++. +..++.+++|+..+
T Consensus        34 p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (301)
T d1l0qa2          34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS  105 (301)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-------eeeeeccc-cccccccccccccccccccccceeeeccccc
Confidence            3458999999987 5677899999999875442       23455554 4689999999986654 55678899999999


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      ++....+..... +.++.+.+++...+               .....+..+.+++.....    .+..+. +...+..++
T Consensus       106 ~~~~~~~~~~~~-~~~~~~~~dg~~~~---------------~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~  164 (301)
T d1l0qa2         106 NTVAGTVKTGKS-PLGLALSPDGKKLY---------------VTNNGDKTVSVINTVTKA----VINTVS-VGRSPKGIA  164 (301)
T ss_dssp             TEEEEEEECSSS-EEEEEECTTSSEEE---------------EEETTTTEEEEEETTTTE----EEEEEE-CCSSEEEEE
T ss_pred             ceeeeecccccc-ceEEEeecCCCeee---------------eeeccccceeeeeccccc----eeeecc-cCCCceEEE
Confidence            988777765432 23334333332111               122223334444333221    122333 445688999


Q ss_pred             EeCCC-eEEEEe-CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC---CCeEEEEeCCCCeEEEecCCC
Q 011126          396 WSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQVVDYTDIR  470 (493)
Q Consensus       396 ~sp~g-~l~sgs-~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~IWdl~~~~~~~~~~~~  470 (493)
                      ++|++ .+++++ .++.+.+|+.........+.....+..++|++ +++.++.+..   ++.|++||+.+++++....+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~  243 (301)
T d1l0qa2         165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG  243 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC
T ss_pred             eeccccceeeecccccccccccccceeeeecccccCCcceeeccc-cccccccccccceeeeeeeeecCCCeEEEEEcCC
Confidence            99998 555555 55788899999888888888888899999999 8887766543   468999999999988765566


Q ss_pred             CCeEEEEEccCCCEEEEee
Q 011126          471 EIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       471 ~~I~sv~~spdG~~l~s~s  489 (493)
                      ..++.++|+|||++|++++
T Consensus       244 ~~~~~va~spdg~~l~va~  262 (301)
T d1l0qa2         244 PDPAGIAVTPDGKKVYVAL  262 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEE
T ss_pred             CCEEEEEEeCCCCEEEEEE
Confidence            7789999999999876544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=4.2e-15  Score=143.01  Aligned_cols=217  Identities=10%  Similarity=0.044  Sum_probs=141.5

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeee-cccCCEEEEEEccCCCEE-EEEECCCcEEEEecCCCee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~~~~~  318 (493)
                      ++|++++++|++++.+++|.|||+.+.+.       .+++. .|...+..++|+|||++| +++..++.|++||+.+++.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~-------~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTV-------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEE-------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCE-------EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee
Confidence            57999999999999999999999986532       22343 456678899999999987 4556789999999999988


Q ss_pred             eeeeeccCCC------CceEEEeeCCCCc--------------------eeeeeccCccccc----------eeeeecCC
Q 011126          319 LDGFDVQDTD------PSCLYFTINHLSQ--------------------LIPIDVDKEKIDK----------TKSLRKSS  362 (493)
Q Consensus       319 ~~~~~~~~~~------~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~----------~~~~~~s~  362 (493)
                      +..+......      +..+.+.+++...                    +..++........          ......+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  154 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             eeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC
Confidence            8766543321      2233333322111                    0111111100000          00000111


Q ss_pred             CceEE-------EcCCCc--------------------------------------------------------------
Q 011126          363 DLTCV-------VLPPKV--------------------------------------------------------------  373 (493)
Q Consensus       363 ~~~~~-------~~~~~~--------------------------------------------------------------  373 (493)
                      ++.++       +|+...                                                              
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (346)
T d1jmxb_         155 DGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS  234 (346)
T ss_dssp             TSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred             CCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEE
Confidence            11111       111100                                                              


Q ss_pred             eeecc--cceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC
Q 011126          374 FRLLE--KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID  450 (493)
Q Consensus       374 ~~~~~--~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D  450 (493)
                      +....  .....+..|...+..+.+++++ +++... ++.|++||+.+++.+..+.+...+.+++|+| |+++|++++.|
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~-DG~~l~v~~~d  312 (346)
T d1jmxb_         235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDK-KGDKLYLGGTF  312 (346)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECS-SSSCEEEESBS
T ss_pred             EECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcC-CCCEEEEEeCC
Confidence            00000  0112234567778888888887 655554 4679999999999999998888899999999 99999999999


Q ss_pred             CeEEEEeCCCCeEEEe
Q 011126          451 GKVRIWEVRRCQVVDY  466 (493)
Q Consensus       451 g~V~IWdl~~~~~~~~  466 (493)
                      |.|+|||+.+++.+..
T Consensus       313 ~~v~v~D~~t~~~i~~  328 (346)
T d1jmxb_         313 NDLAVFNPDTLEKVKN  328 (346)
T ss_dssp             SEEEEEETTTTEEEEE
T ss_pred             CcEEEEECccCCEEEE
Confidence            9999999999998853

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=1.2e-14  Score=139.15  Aligned_cols=224  Identities=9%  Similarity=0.088  Sum_probs=143.5

Q ss_pred             CeEEeeecCCeEEEEECCCccccccccccceeee--cccCCEEEEEEccCCCEE-EEEECCCcEEEEecCCCeeeeeeec
Q 011126          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL--AHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDV  324 (493)
Q Consensus       248 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~--~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~~~~~~~~~~~  324 (493)
                      +++++++.|++|+|||+.+...       ..++.  .+...+..++|+|||++| ++++.++.|++||+.+++.+..+..
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~-------~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~   74 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAV-------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE-------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEEcCCCEEEEEECCCCeE-------EEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            5899999999999999986542       22333  244567899999999987 4667899999999999998887765


Q ss_pred             cCC-----CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126          325 QDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (493)
Q Consensus       325 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (493)
                      +..     .+..+.+.++....+.... .. ...  .......+..+.+++.....    ....+. +...+..++|+|+
T Consensus        75 ~~~~~~~~~~~~v~~s~dg~~l~~~~~-~~-~~~--~~~~~~~~~~~~~~d~~~~~----~~~~~~-~~~~~~~~~~s~d  145 (337)
T d1pbyb_          75 STPEERVKSLFGAALSPDGKTLAIYES-PV-RLE--LTHFEVQPTRVALYDAETLS----RRKAFE-APRQITMLAWARD  145 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEE-EE-EEC--SSCEEECCCEEEEEETTTTE----EEEEEE-CCSSCCCEEECTT
T ss_pred             CCCcccccceeeEEEcCCCcEEEEeec-CC-cce--eeeccccccceeeccccCCe----EEEecc-ccCCceEEEEcCC
Confidence            432     2234444443332221111 00 000  00011122333334333221    122233 3455778888888


Q ss_pred             C-eEEEEeCCCeEEEEECCCCcEEEEe-----------------------------------------------------
Q 011126          400 G-FLLSSSADKTVRLWQVGIDRCLRVF-----------------------------------------------------  425 (493)
Q Consensus       400 g-~l~sgs~Dg~V~lWd~~~~~~~~~~-----------------------------------------------------  425 (493)
                      | ++++++.  .+.+||..+++....+                                                     
T Consensus       146 g~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (337)
T d1pbyb_         146 GSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT  223 (337)
T ss_dssp             SSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred             CCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEE
Confidence            8 6766654  3566776554332221                                                     


Q ss_pred             --------------cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          426 --------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       426 --------------~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                                    .+...+..+.++| ++.+++.+  ++.|++||+.+++.+....+...+.+++|+|||++|++++.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~  300 (337)
T d1pbyb_         224 MDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBS
T ss_pred             EEcCCCcEEEEEecCCCcceEEEEecc-cceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCC
Confidence                          1344556677777 77777665  589999999999999877778889999999999999998765


Q ss_pred             C
Q 011126          492 F  492 (493)
Q Consensus       492 ~  492 (493)
                      .
T Consensus       301 ~  301 (337)
T d1pbyb_         301 G  301 (337)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.61  E-value=3e-13  Score=127.30  Aligned_cols=212  Identities=13%  Similarity=0.164  Sum_probs=152.5

Q ss_pred             EEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCCcEEEEecCCCeeeeeeeccCCC
Q 011126          250 LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHERLDGFDVQDTD  328 (493)
Q Consensus       250 lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~V~iWdl~~~~~~~~~~~~~~~  328 (493)
                      .++++.+++|.|||..+.+.       .+++.. ...+..++|+|||++|+ +++.++.|++||+.+++.+..+..+.. 
T Consensus         5 yV~~~~~~~v~v~D~~t~~~-------~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-   75 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKV-------TATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-   75 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEE-------EEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-
T ss_pred             EEEECCCCEEEEEECCCCeE-------EEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-
Confidence            34577899999999876542       223332 34578999999999874 666889999999999998888766543 


Q ss_pred             CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEe
Q 011126          329 PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSS  406 (493)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs  406 (493)
                      +..+.+..+...               .......+..+.+++....    +....+. +...+.+++|+|++  +++++.
T Consensus        76 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~  135 (301)
T d1l0qa2          76 PQGVAVSPDGKQ---------------VYVTNMASSTLSVIDTTSN----TVAGTVK-TGKSPLGLALSPDGKKLYVTNN  135 (301)
T ss_dssp             EEEEEECTTSSE---------------EEEEETTTTEEEEEETTTT----EEEEEEE-CSSSEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccc---------------ccccccccceeeecccccc----eeeeecc-ccccceEEEeecCCCeeeeeec
Confidence            233333322211               1122233344444444322    1233333 45667899999999  556777


Q ss_pred             CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC-CeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEE
Q 011126          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVR  485 (493)
Q Consensus       407 ~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-g~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l  485 (493)
                      .++.+.+|+..+...+..+.+...+.++.++| ++.++++++.+ +.+.+|+....+..........+..++|+++|+.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  214 (301)
T d1l0qa2         136 GDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKA  214 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEE
T ss_pred             cccceeeeeccccceeeecccCCCceEEEeec-cccceeeecccccccccccccceeeeecccccCCcceeecccccccc
Confidence            89999999999999999998888899999999 88877776654 77889998888888766667778999999999998


Q ss_pred             EEeecC
Q 011126          486 QNSACN  491 (493)
Q Consensus       486 ~s~s~d  491 (493)
                      ++++.+
T Consensus       215 ~v~~~~  220 (301)
T d1l0qa2         215 YVTNVD  220 (301)
T ss_dssp             EEEEEC
T ss_pred             cccccc
Confidence            876544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=5.2e-14  Score=134.61  Aligned_cols=219  Identities=10%  Similarity=0.041  Sum_probs=141.9

Q ss_pred             cccceeccCCCeE-EeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE------------C
Q 011126          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG------------E  304 (493)
Q Consensus       238 ~~~~~fsp~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs------------~  304 (493)
                      +..++|+|||+++ ++++.++.|.+||+.+.+.... .. ......+...+..++|+|++++++++.            .
T Consensus        36 ~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~-~~-~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T d1pbyb_          36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR-ID-LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE-EE-CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             ccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEE-Ee-cCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccc
Confidence            3458999999987 5677899999999986543211 00 001111233456799999999998876            4


Q ss_pred             CCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceee------eeccCccccceee------------------eec
Q 011126          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIP------IDVDKEKIDKTKS------------------LRK  360 (493)
Q Consensus       305 Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------------------~~~  360 (493)
                      +..+.+||..+++....+.... .+..+.+.+++...+..      ++...........                  ...
T Consensus       114 ~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (337)
T d1pbyb_         114 PTRVALYDAETLSRRKAFEAPR-QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEECCS-SCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCC
T ss_pred             ccceeeccccCCeEEEeccccC-CceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeeccc
Confidence            6789999999999887776543 34455555444322211      1111111000000                  000


Q ss_pred             CCCc-----------------------eEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEEC
Q 011126          361 SSDL-----------------------TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV  416 (493)
Q Consensus       361 s~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~  416 (493)
                      ....                       .+.+++.....   .....+..|...+..++++|++ +++.+  ++.|++||+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~  267 (337)
T d1pbyb_         193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE---MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL  267 (337)
T ss_dssp             TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC---EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred             cccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc---EEEEEecCCCcceEEEEecccceEEEEc--cccEEEEEC
Confidence            0000                       01111111100   0122345567778888888888 55544  589999999


Q ss_pred             CCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 011126          417 GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (493)
Q Consensus       417 ~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~  465 (493)
                      .+++.+..+.+...+.+++|+| ++++|++++.|++|+|||+.+.+.+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~  315 (337)
T d1pbyb_         268 EKNASIKRVPLPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             TTTEEEEEEECSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             CCCcEEEEEcCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            9999999999888999999999 99999999999999999999988774

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=1.2e-13  Score=139.45  Aligned_cols=241  Identities=7%  Similarity=-0.103  Sum_probs=145.9

Q ss_pred             ccccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEE-EEEECCCcEEEEecCC
Q 011126          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIE  315 (493)
Q Consensus       237 ~~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~V~iWdl~~  315 (493)
                      .+..++|+|||+++++++.|+.|++||+........  ...+...+|.+.+.+..|+|||++| ++++.+++|+|||..+
T Consensus        63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~--~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t  140 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  140 (432)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE--EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcc
Confidence            345689999999999999999999999876542211  1112234677778888899999986 6788899999999999


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      ++.+..+..+........+.+......+..  ...  .............+.+++......  ..+.. ..+...+.+++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--s~d--g~~~~vs~~~~~~i~~~d~~~~~~--~~~~~-i~~g~~~~~~~  213 (432)
T d1qksa2         141 LEPKKIQSTRGMTYDEQEYHPEPRVAAILA--SHY--RPEFIVNVKETGKILLVDYTDLNN--LKTTE-ISAERFLHDGG  213 (432)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEE--CSS--SSEEEEEETTTTEEEEEETTCSSE--EEEEE-EECCSSEEEEE
T ss_pred             ccceeeeccCCccccceeccCCCceeEEEE--CCC--CCEEEEEEccCCeEEEEEccCCCc--ceEEE-EcccCccccce
Confidence            998887765544333333322221111111  111  111222333344555554332111  01112 23556788999


Q ss_pred             EeCCC-eEEEE-eCCCeEEEEECCCCcEEEEec------CCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeCCCCeEEEe
Q 011126          396 WSKNG-FLLSS-SADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVVDY  466 (493)
Q Consensus       396 ~sp~g-~l~sg-s~Dg~V~lWd~~~~~~~~~~~------h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~~~~~~~~  466 (493)
                      |+|+| +++++ ..++.|.++|..+++.+..+.      |........+.+ .+.+.++.. .++.|.+|+......   
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~~~lg~~~v~~~~~~~~~~---  289 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPVWATSHMGDDSVALIGTDPEGH---  289 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEEEEEEBSSSSEEEEEECCTTTC---
T ss_pred             ECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCceecccccCCceEEecccccccc---
Confidence            99999 55544 556789999999988887764      334444445444 445555543 378899998764421   


Q ss_pred             cCCCCCeEEEEEccCCCEEEEeec
Q 011126          467 TDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       467 ~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ..+...+....++|+|..+++++.
T Consensus       290 ~~~~~~v~~~~~~~~g~~~~~~s~  313 (432)
T d1qksa2         290 PDNAWKILDSFPALGGGSLFIKTH  313 (432)
T ss_dssp             TTTBTSEEEEEECSCSCCCCEECC
T ss_pred             cccccEEEEEEEcCCCCeEEEEec
Confidence            233344555555555554444443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.56  E-value=5.8e-14  Score=141.06  Aligned_cols=179  Identities=10%  Similarity=0.026  Sum_probs=129.1

Q ss_pred             CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccC
Q 011126          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD  326 (493)
Q Consensus       247 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~  326 (493)
                      +-++++.+.||+|+|||..+.+       ...++..|. .+..++|+|||++|++++.|++|++||+.+++......   
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~-------~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~---  100 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKK-------IVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE---  100 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCS-------EEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE---
T ss_pred             eEEEEEEcCCCEEEEEECCCCc-------EEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE---
Confidence            3356778899999999987544       233566664 69999999999999999999999999998876432221   


Q ss_pred             CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-e-EEE
Q 011126          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F-LLS  404 (493)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~-l~s  404 (493)
                                                                            +....+|.+.+.+++|+|+| + +++
T Consensus       101 ------------------------------------------------------i~~~~~~~~~~~s~~~spDG~~l~v~  126 (426)
T d1hzua2         101 ------------------------------------------------------IKIGIEARSVESSKFKGYEDRYTIAG  126 (426)
T ss_dssp             ------------------------------------------------------EECCSEEEEEEECCSTTCTTTEEEEE
T ss_pred             ------------------------------------------------------EeCCCCCcceEEeeeecCCCCEEEEe
Confidence                                                                  11122455566777889999 5 466


Q ss_pred             EeCCCeEEEEECCCCcEEEEec------------CCCcEEEEEEccCCCCEEEEEe-CCCeEEEEeCCCCe--EEEecCC
Q 011126          405 SSADKTVRLWQVGIDRCLRVFS------------HNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQ--VVDYTDI  469 (493)
Q Consensus       405 gs~Dg~V~lWd~~~~~~~~~~~------------h~~~V~~v~fsp~d~~~l~sgs-~Dg~V~IWdl~~~~--~~~~~~~  469 (493)
                      +..++++++||..++.++..+.            +......+.+++ ++.+++... ..+.+.+++.....  .+....+
T Consensus       127 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  205 (426)
T d1hzua2         127 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA  205 (426)
T ss_dssp             EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEECSSSSSCEEEEEEC
T ss_pred             ecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECC-CCCEEEEecCCCCeEEEEEeccccceeeEEecc
Confidence            6789999999999998887664            334455666676 555555443 34566667666544  3345567


Q ss_pred             CCCeEEEEEccCCCEEEEeecC
Q 011126          470 REIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       470 ~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      ...+..+.|+|+|++++++..+
T Consensus       206 ~~~~~~~~~~~~g~~~~~a~~~  227 (426)
T d1hzua2         206 APFLADGGWDSSHRYFMTAANN  227 (426)
T ss_dssp             CSSEEEEEECTTSCEEEEEETT
T ss_pred             CCccEeeeECCCCcEEEeeeec
Confidence            7789999999999999888653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.51  E-value=5.7e-12  Score=122.83  Aligned_cols=236  Identities=8%  Similarity=-0.057  Sum_probs=144.1

Q ss_pred             cccccceeccCCCeEEee-----ecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-------
Q 011126          236 DRHGSATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-------  303 (493)
Q Consensus       236 ~~~~~~~fsp~g~~lasg-----s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-------  303 (493)
                      ..+..++++|+|+.+++.     +..+.|.+||....+.       ..++..+...  .+.|+|||++|++++       
T Consensus        21 ~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~-------~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~   91 (373)
T d2madh_          21 GPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-------LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             CCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCE-------EEEEeCCCCc--cEEEcCCCCEEEEEeecCCccc
Confidence            345568899999988764     2446789998765432       2234445433  699999999998875       


Q ss_pred             ---CCCcEEEEecCCCeeeeeeeccCCC-------CceEEEeeCCCCceeee----------eccCccc-----------
Q 011126          304 ---EDGTVRVWKVIEHERLDGFDVQDTD-------PSCLYFTINHLSQLIPI----------DVDKEKI-----------  352 (493)
Q Consensus       304 ---~Dg~V~iWdl~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~----------~~~~~~~-----------  352 (493)
                         .++.|++||+.+++.+..+..+...       +..+.+.++.....+..          .......           
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYH  171 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEE
Confidence               3578999999999887776554332       12233333332211111          0000000           


Q ss_pred             ----cceeeeecCCCceEEEcCCCceeec--------------------------------cc-------------ceEE
Q 011126          353 ----DKTKSLRKSSDLTCVVLPPKVFRLL--------------------------------EK-------------PLHE  383 (493)
Q Consensus       353 ----~~~~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~-------------~~~~  383 (493)
                          .....+....++.+.+|+.......                                ..             .+..
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  251 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAP  251 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEe
Confidence                0011122333344444432111000                                00             0000


Q ss_pred             EecCC----------CCEeEEEEeCCC-----------eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCC
Q 011126          384 FQGHS----------SEVLDLSWSKNG-----------FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN  442 (493)
Q Consensus       384 ~~~h~----------~~V~~l~~sp~g-----------~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~  442 (493)
                      ...+.          .....+++++++           .+++...++.|.+||+.+++.+..+.+...+..++|+| |++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~sp-DG~  330 (373)
T d2madh_         252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQ-DGG  330 (373)
T ss_pred             eccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECC-CCC
Confidence            11111          112234455544           33455667889999999999999999999999999999 888


Q ss_pred             --EEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccC
Q 011126          443 --YFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPD  481 (493)
Q Consensus       443 --~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spd  481 (493)
                        ++++++.|++|+|||+.+++.+. +..+....+.|++.++
T Consensus       331 ~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         331 PDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence              45788999999999999999886 5557778888887665

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=6.5e-12  Score=119.89  Aligned_cols=238  Identities=12%  Similarity=0.164  Sum_probs=142.7

Q ss_pred             eecccccceeccCCCeEEee-ecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEEE
Q 011126          234 IIDRHGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVW  311 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasg-s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~iW  311 (493)
                      +...+..++|+|||++|+++ ..++.|++|++......+...    ....+...+..++|+|||++|++++. ++.|.+|
T Consensus        35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~----~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~  110 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA----AESALPGSLTHISTDHQGQFVFVGSYNAGNVSVT  110 (333)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE----EEEECSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe----eecccCCCceEEEEcCCCCEEeecccCCCceeee
Confidence            44566779999999998654 458999999987544322110    11234456778999999999999885 6789999


Q ss_pred             ecCCCeeeeeeec--cCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc--eeecccceEEEecC
Q 011126          312 KVIEHERLDGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV--FRLLEKPLHEFQGH  387 (493)
Q Consensus       312 dl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~h  387 (493)
                      +............  ....+..+.+.++... ++.......              .+.+++...  .............+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~-~~~~~~~~~--------------~i~~~~~~~~~~~~~~~~~~~~~~~  175 (333)
T d1ri6a_         111 RLEDGLPVGVVDVVEGLDGCHSANISPDNRT-LWVPALKQD--------------RICLFTVSDDGHLVAQDPAEVTTVE  175 (333)
T ss_dssp             EEETTEEEEEEEEECCCTTBCCCEECTTSSE-EEEEEGGGT--------------EEEEEEECTTSCEEEEEEEEEECST
T ss_pred             ccccccceecccccCCCccceEEEeeeccee-eeccccccc--------------eeeEEEeccCCcceeeeceeeeeec
Confidence            9877665444332  2223333444433321 111111111              111111110  00000011112234


Q ss_pred             CCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCc----EEEEe-------cCCCcEEEEEEccCCCCEEEE-EeCCCeE
Q 011126          388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR----CLRVF-------SHNNYVTSVAFNPVDDNYFIS-GSIDGKV  453 (493)
Q Consensus       388 ~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~----~~~~~-------~h~~~V~~v~fsp~d~~~l~s-gs~Dg~V  453 (493)
                      ......++|++++  .+.+....+...+|++....    .....       ........++++| ++++++. +..++.+
T Consensus       176 g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~~~~~~~~~~~~  254 (333)
T d1ri6a_         176 GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLI  254 (333)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEE
T ss_pred             CCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec-ccCceeeecccCCeE
Confidence            5567889999998  44555667788888875432    11111       1345677899999 7776554 4567899


Q ss_pred             EEEeCCCCe----EEEecCCCCCeEEEEEccCCCEEEEeecC
Q 011126          454 RIWEVRRCQ----VVDYTDIREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       454 ~IWdl~~~~----~~~~~~~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                      .+|++....    ..........+..++|+|||++|++++.+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~  296 (333)
T d1ri6a_         255 TVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK  296 (333)
T ss_dssp             EEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT
T ss_pred             EEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECC
Confidence            999887432    22334445667889999999999887653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.44  E-value=7.8e-13  Score=127.97  Aligned_cols=240  Identities=8%  Similarity=-0.011  Sum_probs=140.8

Q ss_pred             cceeccCCCeEEee----------ecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE--CCCc
Q 011126          240 SATLKPGDHELTLG----------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG--EDGT  307 (493)
Q Consensus       240 ~~~fsp~g~~lasg----------s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs--~Dg~  307 (493)
                      .++|+|||++|++.          ..++.|++||..........................+.|+|+|++++.+.  .+..
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  130 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  130 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCce
Confidence            48999999988764          45789999998865432110000000011222345689999999887765  4678


Q ss_pred             EEEEecCCCeeeeeeeccCC-------CCceEEEeeCCCCce---------eeeeccCcccc-------------ceeee
Q 011126          308 VRVWKVIEHERLDGFDVQDT-------DPSCLYFTINHLSQL---------IPIDVDKEKID-------------KTKSL  358 (493)
Q Consensus       308 V~iWdl~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---------~~~~~~~~~~~-------------~~~~~  358 (493)
                      +.+|+..+++.+..+..+..       ....+.+..+.....         ...........             .....
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (355)
T d2bbkh_         131 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV  210 (355)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             eeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEE
Confidence            99999999988777654321       111222222221111         11111000000             00112


Q ss_pred             ecCCCceEEEcCCCceeecccceEEEecC----------CCCEeEEEEeCCC-eEEEEeCC----------CeEEEEECC
Q 011126          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGH----------SSEVLDLSWSKNG-FLLSSSAD----------KTVRLWQVG  417 (493)
Q Consensus       359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~h----------~~~V~~l~~sp~g-~l~sgs~D----------g~V~lWd~~  417 (493)
                      ....++.+++|+.......  .+....+|          ......+++++++ .++....+          ..|.+||..
T Consensus       211 ~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~  288 (355)
T d2bbkh_         211 WPTYTGKIHQIDLSSGDAK--FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK  288 (355)
T ss_dssp             EEBTTSEEEEEECTTSSCE--ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             EecCCCeEEEEecCCCcEE--EEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCC
Confidence            2234444555543321110  00011111          1223458889988 44433322          479999999


Q ss_pred             CCcEEEEecCCCcEEEEEEccCCCC--EEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEccCC
Q 011126          418 IDRCLRVFSHNNYVTSVAFNPVDDN--YFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDG  482 (493)
Q Consensus       418 ~~~~~~~~~h~~~V~~v~fsp~d~~--~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG  482 (493)
                      +++.+..+.+...+.+++|+| +++  ++++++.|++|+|||+.+++++. +..+......|.+.++|
T Consensus       289 t~~~~~~~~~~~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         289 TGERLAKFEMGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             TCCEEEEEEEEEEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             CCcEEEEecCCCCEEEEEEcC-CCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            999999988878899999999 887  46677889999999999999885 44565556666665554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=2e-11  Score=116.37  Aligned_cols=176  Identities=13%  Similarity=0.149  Sum_probs=124.8

Q ss_pred             eEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEEEEecCCCeeeeeeeccCC
Q 011126          249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHERLDGFDVQDT  327 (493)
Q Consensus       249 ~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~iWdl~~~~~~~~~~~~~~  327 (493)
                      .+++++.+++|+||++.....    +... ....|.+.|..|+|+|||++|++++ .|+.|++|++........+     
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~----l~~~-~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~-----   75 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGA----LTLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-----   75 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC----EEEE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-----
T ss_pred             EEEECCCCCcEEEEEEcCCCC----eEEE-EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE-----
Confidence            457788999999999874331    1111 2235888999999999999996655 5899999998654321111     


Q ss_pred             CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEe
Q 011126          328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS  406 (493)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs  406 (493)
                                                                            .....+...+..++|+|+| +|++++
T Consensus        76 ------------------------------------------------------~~~~~~~~~p~~l~~spDg~~l~v~~  101 (333)
T d1ri6a_          76 ------------------------------------------------------AAESALPGSLTHISTDHQGQFVFVGS  101 (333)
T ss_dssp             ------------------------------------------------------EEEEECSSCCSEEEECTTSSEEEEEE
T ss_pred             ------------------------------------------------------eeecccCCCceEEEEcCCCCEEeecc
Confidence                                                                  0011234456789999999 777666


Q ss_pred             -CCCeEEEEECCCCcEEEEe---cCCCcEEEEEEccCCCCEEEEEeC-CCeEEEEeCCCCeEE-------EecCCCCCeE
Q 011126          407 -ADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVV-------DYTDIREIVS  474 (493)
Q Consensus       407 -~Dg~V~lWd~~~~~~~~~~---~h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~IWdl~~~~~~-------~~~~~~~~I~  474 (493)
                       .++.|.+|+..........   .+...+.++.|+| ++++++.++. +..|.+|+.......       ........+.
T Consensus       102 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~  180 (333)
T d1ri6a_         102 YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR  180 (333)
T ss_dssp             TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEE
T ss_pred             cCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCcc
Confidence             5789999998776654443   3777889999999 8998887775 567999998764321       1233455678


Q ss_pred             EEEEccCCCEEEEee
Q 011126          475 AVCYCPDGKVRQNSA  489 (493)
Q Consensus       475 sv~~spdG~~l~s~s  489 (493)
                      .++|++++.+++...
T Consensus       181 ~i~~~~~~~~~~~~~  195 (333)
T d1ri6a_         181 HMVFHPNEQYAYCVN  195 (333)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             EEEEeccceeEEeec
Confidence            899999999887654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.32  E-value=5.8e-11  Score=114.44  Aligned_cols=230  Identities=9%  Similarity=0.017  Sum_probs=137.3

Q ss_pred             ceeccCCCeEEee-----ecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEE----------ECC
Q 011126          241 ATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG----------GED  305 (493)
Q Consensus       241 ~~fsp~g~~lasg-----s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg----------s~D  305 (493)
                      .+.+|+++.+++.     ..+..|.|||..+.+.       ..++..+..  ..++|+|||++|+++          ..|
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~-------~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------IGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------EEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcE-------EEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCC
Confidence            4678999988764     3566899999876542       223444433  379999999988764          347


Q ss_pred             CcEEEEecCCCeeeeeeeccCCC-------CceEEEeeCCCCce----------eeeeccCccccceee-----------
Q 011126          306 GTVRVWKVIEHERLDGFDVQDTD-------PSCLYFTINHLSQL----------IPIDVDKEKIDKTKS-----------  357 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-----------  357 (493)
                      +.|++||+.+++.+..+..+...       +..+.+.+++....          ..+............           
T Consensus        78 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d2bbkh_          78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA  157 (355)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecC
Confidence            89999999999988777654322       22334444332211          111111111111000           


Q ss_pred             ----eecCCCceEEEcCCCceeecccceEE------EecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEe-
Q 011126          358 ----LRKSSDLTCVVLPPKVFRLLEKPLHE------FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-  425 (493)
Q Consensus       358 ----~~~s~~~~~~~~~~~~~~~~~~~~~~------~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-  425 (493)
                          +..+.++..+.+....    ......      ...+...+....+.+++ .++.++.++.+.+|++..+...... 
T Consensus       158 ~~~~~~~~~dg~~~~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  233 (355)
T d2bbkh_         158 PDTFFMHCRDGSLAKVAFGT----EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA  233 (355)
T ss_dssp             TTEEEEEETTSCEEEEECCS----SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCC
T ss_pred             CcceEEEcCCCCEEEEEecC----CCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEec
Confidence                0111111111111100    000010      11233445566777777 8889999999999999877543221 


Q ss_pred             -c-C----------CCcEEEEEEccCCCCEEEEEeCC----------CeEEEEeCCCCeEEEecCCCCCeEEEEEccCCC
Q 011126          426 -S-H----------NNYVTSVAFNPVDDNYFISGSID----------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK  483 (493)
Q Consensus       426 -~-h----------~~~V~~v~fsp~d~~~l~sgs~D----------g~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~  483 (493)
                       . +          ......++++| ++..++....+          ..|.+||+.+++.+....+...+.+++|+|||+
T Consensus       234 ~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~  312 (355)
T d2bbkh_         234 VEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEK  312 (355)
T ss_dssp             EESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSS
T ss_pred             cCCcccceEeeeeeccceEEEEEeC-CCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCC
Confidence             1 1          12234588898 88877766544          369999999999886555667789999999998


Q ss_pred             E
Q 011126          484 V  484 (493)
Q Consensus       484 ~  484 (493)
                      .
T Consensus       313 ~  313 (355)
T d2bbkh_         313 P  313 (355)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.32  E-value=1.5e-11  Score=120.38  Aligned_cols=227  Identities=8%  Similarity=-0.035  Sum_probs=134.3

Q ss_pred             ceeccCCCeEEee----------ecCCeEEEEECCCccccccccccceeeecc-------cCCEEEEEEccCCCEEEEEE
Q 011126          241 ATLKPGDHELTLG----------QRMRRVRVHPVKKQSRELSSLYTGQEFLAH-------EGSILTMKFSLDGQYLASGG  303 (493)
Q Consensus       241 ~~fsp~g~~lasg----------s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H-------~~~I~~l~fspdg~~Lasgs  303 (493)
                      ++|+|+|+.|++.          ..++.|++||..+.+...       .+..|       ......++|+|||++|+++.
T Consensus        70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~-------~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~  142 (368)
T d1mdah_          70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA-------DIELPDAPRFSVGPRVHIIGNCASSACLLFFL  142 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE-------EEEETTSCSCCBSCCTTSEEECTTSSCEEEEE
T ss_pred             ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEee-------eecCCccceecccCCccceEECCCCCEEEEEe
Confidence            7899999988874          457889999987654221       12111       11234689999999998776


Q ss_pred             -CCCcEEEEecCCCeeeeeeeccCCCCce-----EEEeeCCCCceeeeeccCccccc-----------------------
Q 011126          304 -EDGTVRVWKVIEHERLDGFDVQDTDPSC-----LYFTINHLSQLIPIDVDKEKIDK-----------------------  354 (493)
Q Consensus       304 -~Dg~V~iWdl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----------------------  354 (493)
                       .++.|.+||+.+++....+..+......     ..+.......+..+.........                       
T Consensus       143 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (368)
T d1mdah_         143 FGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             CSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred             CCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC
Confidence             5799999999999988877665432211     11111122222222211111100                       


Q ss_pred             -eeeeecCCCceEEEcCCCceeecccceEEEec----------CCCCEeEEEEeCCC-eEEEE-eCC--------CeEEE
Q 011126          355 -TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG----------HSSEVLDLSWSKNG-FLLSS-SAD--------KTVRL  413 (493)
Q Consensus       355 -~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~----------h~~~V~~l~~sp~g-~l~sg-s~D--------g~V~l  413 (493)
                       ...........+..+........    .....          .......+++++++ .++.. ..+        ..|.+
T Consensus       223 g~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v  298 (368)
T d1mdah_         223 GMLVWAVASSILQGDIPAAGATMK----AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS  298 (368)
T ss_dssp             TEEEECBSSCCEEEECCSSCCEEE----CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred             cEEEEecCCCEEEEeecCCceEEE----eecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEE
Confidence             00011111111111111100000    00000          01122357888887 33332 211        35999


Q ss_pred             EECCCCcEEEEecCCCcEEEEEEccCCCC--EEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEc
Q 011126          414 WQVGIDRCLRVFSHNNYVTSVAFNPVDDN--YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC  479 (493)
Q Consensus       414 Wd~~~~~~~~~~~h~~~V~~v~fsp~d~~--~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~s  479 (493)
                      ||..+++.+..+.+...+..++|+| |++  +++++..|+.|+|||..+++.+.........+.|.+-
T Consensus       299 ~D~~t~~~~~~~~~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~  365 (368)
T d1mdah_         299 VTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ  365 (368)
T ss_dssp             EESSSCCEEECCEEEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECC
T ss_pred             EECCCCcEeEEecCCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEEe
Confidence            9999999999988888899999999 886  4567778999999999999999766665556666653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.16  E-value=6e-11  Score=113.18  Aligned_cols=137  Identities=7%  Similarity=-0.012  Sum_probs=104.6

Q ss_pred             EEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEc
Q 011126          290 MKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVL  369 (493)
Q Consensus       290 l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  369 (493)
                      ++|+++++||++++.|++|.|||+.+++.+..+..                                             
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~---------------------------------------------   36 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM---------------------------------------------   36 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC---------------------------------------------
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc---------------------------------------------
Confidence            46899999999999999999999998876554432                                             


Q ss_pred             CCCceeecccceEEEecCCCCEeEEEEeCCC-e-EEEEeCCCeEEEEECCCCcEEEEecCC-------CcEEEEEEccCC
Q 011126          370 PPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F-LLSSSADKTVRLWQVGIDRCLRVFSHN-------NYVTSVAFNPVD  440 (493)
Q Consensus       370 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~-l~sgs~Dg~V~lWd~~~~~~~~~~~h~-------~~V~~v~fsp~d  440 (493)
                                      .|...+.+++|+|+| + ++++..++.|++||+.+++.+..+...       ..+..++|+| |
T Consensus        37 ----------------~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~-D   99 (346)
T d1jmxb_          37 ----------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-D   99 (346)
T ss_dssp             ----------------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-T
T ss_pred             ----------------CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec-C
Confidence                            234456789999999 4 467778999999999999998877522       2456799999 9


Q ss_pred             CCEEEEEe------------CCCeEEEEeCCCCeEE---EecCCCCCeEEEEEccCCCEEEEe
Q 011126          441 DNYFISGS------------IDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       441 ~~~l~sgs------------~Dg~V~IWdl~~~~~~---~~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      ++++++++            .++.+.+|+..+++..   ........+..+.++++++.++.+
T Consensus       100 G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (346)
T d1jmxb_         100 GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG  162 (346)
T ss_dssp             SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES
T ss_pred             CCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC
Confidence            99887765            4778999999876543   222334456667788888877654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.97  E-value=1.9e-09  Score=108.67  Aligned_cols=142  Identities=14%  Similarity=0.182  Sum_probs=108.6

Q ss_pred             EEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEE
Q 011126          289 TMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVV  368 (493)
Q Consensus       289 ~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  368 (493)
                      .+.|.++++++..  .|+.|.+||+.+++....+...                                           
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~-------------------------------------------   55 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENS-------------------------------------------   55 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTT-------------------------------------------
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchh-------------------------------------------
Confidence            4789999988764  5788999999988754332211                                           


Q ss_pred             cCCCceeecccceEEEecCCCCEeEEEEeCCC-eEEEEeC---------CCeEEEEECCCCcEEEEecCCCcEEEEEEcc
Q 011126          369 LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA---------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP  438 (493)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~---------Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp  438 (493)
                                    .+..|...|.++.|||+| +|+.++.         ++.+.|||+.+++......+...+..+.|+|
T Consensus        56 --------------~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SP  121 (470)
T d2bgra1          56 --------------TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP  121 (470)
T ss_dssp             --------------TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS
T ss_pred             --------------hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCcccccccccc
Confidence                          124567789999999999 7776643         5678999999998766556889999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeEEEecC-------------------CCCCeEEEEEccCCCEEEEeecC
Q 011126          439 VDDNYFISGSIDGKVRIWEVRRCQVVDYTD-------------------IREIVSAVCYCPDGKVRQNSACN  491 (493)
Q Consensus       439 ~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~-------------------~~~~I~sv~~spdG~~l~s~s~d  491 (493)
                       ||++||.. .++.+++|++.+++......                   .......+.|+|||+.|+....|
T Consensus       122 -DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         122 -VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             -STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             -CcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence             99999985 57789999999887664321                   11234567899999999987654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.93  E-value=1.3e-07  Score=90.96  Aligned_cols=202  Identities=10%  Similarity=-0.112  Sum_probs=117.1

Q ss_pred             ecccCCEEEEEEccCCCEEEEE-----ECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceee-----------
Q 011126          281 LAHEGSILTMKFSLDGQYLASG-----GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIP-----------  344 (493)
Q Consensus       281 ~~H~~~I~~l~fspdg~~Lasg-----s~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  344 (493)
                      .+|.+++..++++|||+.++..     +..+.|.+||..+++.+..+......  .+.|++++......           
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            4688899999999999988764     23467999999999998887655432  45566555432222           


Q ss_pred             -------eeccCcccccee------------------eeecCCCceEEEcCCC-ceeecccceEEEecCCCCEeEEEEeC
Q 011126          345 -------IDVDKEKIDKTK------------------SLRKSSDLTCVVLPPK-VFRLLEKPLHEFQGHSSEVLDLSWSK  398 (493)
Q Consensus       345 -------~~~~~~~~~~~~------------------~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~V~~l~~sp  398 (493)
                             ++....+.....                  .........+..+... ...+..........+.....++.++|
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  174 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHP  174 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEec
Confidence                   111111110000                  0000000011111110 00011111112233445567888999


Q ss_pred             CC--eEEEEeCCCeEEEEECCCCcEEEEec---------------------------CC---------------------
Q 011126          399 NG--FLLSSSADKTVRLWQVGIDRCLRVFS---------------------------HN---------------------  428 (493)
Q Consensus       399 ~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~---------------------------h~---------------------  428 (493)
                      ++  .+++.+.|+++.+|+...+.......                           ..                     
T Consensus       175 ~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  254 (373)
T d2madh_         175 GAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA  254 (373)
T ss_pred             CCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeecc
Confidence            88  67888999999999976544322110                           00                     


Q ss_pred             ------------CcEEEEEEccCCCC----------EEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEE
Q 011126          429 ------------NYVTSVAFNPVDDN----------YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVR  485 (493)
Q Consensus       429 ------------~~V~~v~fsp~d~~----------~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l  485 (493)
                                  .....++++| ++.          .+++...++.|.+||+.+++.+....+...+..++|+|||+.+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~  332 (373)
T d2madh_         255 LSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPD  332 (373)
T ss_pred             ccCcEEeeeeccCcceeeEEec-CCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEE
Confidence                        0112234444 333          3345556778999999999988877788889999999999854

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.88  E-value=2.4e-09  Score=107.83  Aligned_cols=142  Identities=11%  Similarity=0.094  Sum_probs=105.3

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC---------CCcEEEE
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---------DGTVRVW  311 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---------Dg~V~iW  311 (493)
                      +.|.+++.++..  .++.|.+|+.......  .+...+.+..|...|.++.|||||++|+.++.         ++.+.||
T Consensus        22 ~~W~~d~~~~~~--~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          22 LRWISDHEYLYK--QENNILVFNAEYGNSS--VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CEECSSSEEEEE--SSSCEEEEETTTCCEE--EEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CEeCCCCEEEEE--cCCcEEEEECCCCCEE--EEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            678899988765  4788999999877643  22233456778889999999999999998753         4556777


Q ss_pred             ecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCE
Q 011126          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  391 (493)
                      |+.+++.                                                               ..+..|...+
T Consensus        98 d~~~~~~---------------------------------------------------------------~~l~~~~~~~  114 (470)
T d2bgra1          98 DLNKRQL---------------------------------------------------------------ITEERIPNNT  114 (470)
T ss_dssp             ETTTTEE---------------------------------------------------------------CCSSCCCTTE
T ss_pred             ECCCCcc---------------------------------------------------------------cccccCCccc
Confidence            7766542                                                               2234567788


Q ss_pred             eEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-------------------CCCcEEEEEEccCCCCEEEEEeCCC
Q 011126          392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-------------------HNNYVTSVAFNPVDDNYFISGSIDG  451 (493)
Q Consensus       392 ~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-------------------h~~~V~~v~fsp~d~~~l~sgs~Dg  451 (493)
                      ..+.|||+| +||.. .++.+.+|+..++...+...                   ..+....+.|+| ||++|+....|.
T Consensus       115 ~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d~  192 (470)
T d2bgra1         115 QWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFND  192 (470)
T ss_dssp             EEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEEC
T ss_pred             cccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCccceeEecC
Confidence            999999999 77664 57889999999887665432                   122345688999 999999987653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.83  E-value=2.7e-08  Score=98.49  Aligned_cols=241  Identities=10%  Similarity=-0.029  Sum_probs=143.8

Q ss_pred             eecccccceeccCCCeEEee-ecCCeEEEEECCCccccccccccceee-ecccCCEEEEEEccCCC--EEEEEECCC---
Q 011126          234 IIDRHGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQ--YLASGGEDG---  306 (493)
Q Consensus       234 ~~~~~~~~~fsp~g~~lasg-s~dg~V~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~--~Lasgs~Dg---  306 (493)
                      |........++|||++|.+. ..+.+|.++|+...+.       .+.+ ..+...+..++|+|+|+  |++..+.+.   
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~-------~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~  142 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKT-------DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ  142 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE-------EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcE-------eeEEecCCCCCccceEEeccCCEEEEEeccCCcccc
Confidence            34444446678999988554 5789999999875442       2222 23567899999999998  555555543   


Q ss_pred             --------------cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccc----------ccee------
Q 011126          307 --------------TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI----------DKTK------  356 (493)
Q Consensus       307 --------------~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~------  356 (493)
                                    .+..+|..+.+....+.... .+..+.+.+++....... .+....          ....      
T Consensus       143 ~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~-~nse~~~~id~~t~~~~d~i~v~n~p  220 (441)
T d1qnia2         143 PNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTC-YNSERAVDLAGTMRNDRDWVVVFNVE  220 (441)
T ss_dssp             SCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEE-SCTTCCSSHHHHTCSSBCEEEEEEHH
T ss_pred             cCcccccccccccceEEeecCccceeeEEEecCC-CccceEECCCCCEEEEEe-cCCCceEEEeccCcceEEEEEeCCcc
Confidence                          23457877777766665543 344455544443222111 111000          0000      


Q ss_pred             ----------eeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcE---
Q 011126          357 ----------SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC---  421 (493)
Q Consensus       357 ----------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~---  421 (493)
                                ......+....++....    .+.+..+..+.. ...+.++|+|  .++++..+++|.|||+.+...   
T Consensus       221 ~~~~~~~dGk~~~v~~~~v~vvd~~~~----~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~  295 (441)
T d1qnia2         221 RIAAAVKAGNFKTIGDSKVPVVDGRGE----SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFE  295 (441)
T ss_dssp             HHHHHHHTTCCBCCTTCCCCEEECSSS----CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTT
T ss_pred             ceEEEecCCCEEEeCCCCcEEEEcccC----CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhh
Confidence                      00111112222222111    123344444433 5789999999  456778999999999864221   


Q ss_pred             --------EEE-ecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCC----------CeEEE-e-----cCCCCCeEEE
Q 011126          422 --------LRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR----------CQVVD-Y-----TDIREIVSAV  476 (493)
Q Consensus       422 --------~~~-~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~----------~~~~~-~-----~~~~~~I~sv  476 (493)
                              +.- ....-.....+|.+ +++.+.+...|..|..|++..          ..++. +     .+|...+.+.
T Consensus       296 ~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~  374 (441)
T d1qnia2         296 DKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTE  374 (441)
T ss_dssp             TSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTT
T ss_pred             ccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcccccc
Confidence                    111 11223345578999 899999999999999999741          12332 2     4666667777


Q ss_pred             EEccCCCEEEEee
Q 011126          477 CYCPDGKVRQNSA  489 (493)
Q Consensus       477 ~~spdG~~l~s~s  489 (493)
                      +++|||++|++++
T Consensus       375 t~~pdGk~l~s~~  387 (441)
T d1qnia2         375 SRDADGKWLVVLS  387 (441)
T ss_dssp             STTCCCCEEEEEE
T ss_pred             ccCCCCcEEEecC
Confidence            8999999999984

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=1.2e-06  Score=80.31  Aligned_cols=217  Identities=13%  Similarity=0.073  Sum_probs=121.1

Q ss_pred             ecccccceeccCCCeEEeeecCC---eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CCcEEE
Q 011126          235 IDRHGSATLKPGDHELTLGQRMR---RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRV  310 (493)
Q Consensus       235 ~~~~~~~~fsp~g~~lasgs~dg---~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~V~i  310 (493)
                      ...+...+|||||+.||......   .+.+.+......        ..+..+.+.+....|+|+|+.|+.... ++...+
T Consensus        38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~  109 (269)
T d2hqsa1          38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  109 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce--------eEEeeeecccccceecCCCCeeeEeeecCCccce
Confidence            34444578999999998754332   355555543322        234567888999999999998877654 333333


Q ss_pred             EecC--CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCC
Q 011126          311 WKVI--EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (493)
Q Consensus       311 Wdl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (493)
                      +...  .........   ..................+..           .......+...+..     ......+..+.
T Consensus       110 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~i~~~~~~-----~~~~~~~~~~~  170 (269)
T d2hqsa1         110 YVMDLASGQIRQVTD---GRSNNTEPTWFPDSQNLAFTS-----------DQAGRPQVYKVNIN-----GGAPQRITWEG  170 (269)
T ss_dssp             EEEETTTCCEEECCC---CSSCEEEEEECTTSSEEEEEE-----------CTTSSCEEEEEETT-----SSCCEECCCSS
T ss_pred             eecccccccceeeee---ccccccccccccccccceecc-----------cccCCceEeeeecc-----cccceeeeccc
Confidence            3322  221111111   111111111111111111100           00111112111111     12223334456


Q ss_pred             CCEeEEEEeCCC-eEE-EEeCCCeEEEE--ECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC---CCeEEEEeCCCC
Q 011126          389 SEVLDLSWSKNG-FLL-SSSADKTVRLW--QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRC  461 (493)
Q Consensus       389 ~~V~~l~~sp~g-~l~-sgs~Dg~V~lW--d~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~---Dg~V~IWdl~~~  461 (493)
                      .......|+|++ .++ .....+...+|  +...+.. ....+........|+| ||++|+-.+.   ...|++|++.++
T Consensus       171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SP-DG~~i~f~s~~~~~~~l~~~~~dg~  248 (269)
T d2hqsa1         171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGR  248 (269)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             ccccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECC-CCCEEEEEEcCCCCcEEEEEECCCC
Confidence            667788999999 444 44444554444  5444443 4444566677889999 9998876554   347899999998


Q ss_pred             eEEEecCCCCCeEEEEEcc
Q 011126          462 QVVDYTDIREIVSAVCYCP  480 (493)
Q Consensus       462 ~~~~~~~~~~~I~sv~~sp  480 (493)
                      ....+......+...+|+|
T Consensus       249 ~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         249 FKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CEEECCCSSSEEEEEEECC
T ss_pred             CEEEEeCCCCcEEeEEeCC
Confidence            8888888888888999998

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.77  E-value=4.8e-07  Score=85.28  Aligned_cols=233  Identities=12%  Similarity=0.051  Sum_probs=136.6

Q ss_pred             cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee-
Q 011126          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER-  318 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~-  318 (493)
                      .++++|+|+++++...+++|..|+......         .+......+.+++|+++|+++++...++.+.+|+...... 
T Consensus        32 ~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~---------~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          32 NLASAPDGTIFVTNHEVGEIVSITPDGNQQ---------IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCCEE---------EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CEEECCCCCEEEEeCCCCEEEEEeCCCCEE---------EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc
Confidence            489999999999999999998888654322         2344567899999999999999888888888887654321 


Q ss_pred             eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeC
Q 011126          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (493)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  398 (493)
                      ...+...................++........+....  .......+........      ..........+..+.+..
T Consensus       103 ~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~ngi~~~~  174 (302)
T d2p4oa1         103 VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLID--VVQPSGSIWLEHPMLA------RSNSESVFPAANGLKRFG  174 (302)
T ss_dssp             EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEE--TTTTEEEEEEECGGGS------CSSTTCCSCSEEEEEEET
T ss_pred             eeeccccCCccccceeEEccCCCEEeeccccccceeee--ccCCcceeEecCCccc------eeeccCcccccccccccC
Confidence            11111111111122222222222222222111111000  0001111111110000      000112233456777765


Q ss_pred             CCeEEEEeCCCeEEEEECCCCcEEE---EecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE--EecCCCCCe
Q 011126          399 NGFLLSSSADKTVRLWQVGIDRCLR---VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIV  473 (493)
Q Consensus       399 ~g~l~sgs~Dg~V~lWd~~~~~~~~---~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~--~~~~~~~~I  473 (493)
                      +.++++.+..+.|..+++.......   .+........++|.+ +++++++...+++|..++.......  .........
T Consensus       175 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~p  253 (302)
T d2p4oa1         175 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGS  253 (302)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTE
T ss_pred             CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCc
Confidence            5477788888999988876543322   222344566799999 9999998888999999988654332  233344568


Q ss_pred             EEEEE---ccCCCEEEEeec
Q 011126          474 SAVCY---CPDGKVRQNSAC  490 (493)
Q Consensus       474 ~sv~~---spdG~~l~s~s~  490 (493)
                      ++++|   .||++.|++++.
T Consensus       254 t~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         254 TAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EEEEECCSTTTTTEEEEEEC
T ss_pred             eEEEEcCCCCCCCEEEEECC
Confidence            99999   789998876543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.65  E-value=1.2e-05  Score=75.99  Aligned_cols=240  Identities=8%  Similarity=-0.022  Sum_probs=136.3

Q ss_pred             cccceeccCCCeEEeeec-------CCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEE
Q 011126          238 HGSATLKPGDHELTLGQR-------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~-------dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~i  310 (493)
                      ....+|.|+|+++++...       +++|..|+...........   .......+.-..|.|.++|+.|+++.....|..
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~---~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC---CEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEEC---CccccCCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence            334789999997776332       4678888876554322111   011112234578999999998888887777888


Q ss_pred             EecCCCeeeeeeeccCC----CCceEEEeeCCCCceeeeeccCcccc-ceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          311 WKVIEHERLDGFDVQDT----DPSCLYFTINHLSQLIPIDVDKEKID-KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       311 Wdl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      .+...............    .+..+.+.  ....++..+....... ..........+.++.++...      ....+.
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d--~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg------~~~~~~  168 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFD--YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG------QMIQVD  168 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEEC--TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS------CEEEEE
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEEC--CCCCEEEecCccCcccccccceeccCCceEEEEeecC------ceeEee
Confidence            88765543221111111    12223332  2233333222111000 00000111223333333211      111222


Q ss_pred             cCCCCEeEEEEeCCC------eEEEEeCCCeEEEEECCCCcEEEE---e---c--CCCcEEEEEEccCCCCEEEEEeCCC
Q 011126          386 GHSSEVLDLSWSKNG------FLLSSSADKTVRLWQVGIDRCLRV---F---S--HNNYVTSVAFNPVDDNYFISGSIDG  451 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g------~l~sgs~Dg~V~lWd~~~~~~~~~---~---~--h~~~V~~v~fsp~d~~~l~sgs~Dg  451 (493)
                      .+....+.|+|+|++      ++++-+..+.|..||+.....+..   +   .  .....-.+++.+ +++++++....+
T Consensus       169 ~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g  247 (314)
T d1pjxa_         169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSS  247 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTT
T ss_pred             CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcCCC
Confidence            233345688998864      345556788899998764433321   1   1  233567899999 999999888899


Q ss_pred             eEEEEeCCCCeEEE-ecCCCCCeEEEEEccCCCEEEEee
Q 011126          452 KVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       452 ~V~IWdl~~~~~~~-~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      .|.+||..+++++. +......+++++|.||++.|.+..
T Consensus       248 ~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~  286 (314)
T d1pjxa_         248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEE
Confidence            99999998887654 344456789999999998665544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.61  E-value=9.4e-07  Score=85.72  Aligned_cols=102  Identities=10%  Similarity=0.105  Sum_probs=69.2

Q ss_pred             CCCEeEEEEeCCC-eEEEEe-CCCeEEEEECCCCcEEEE---e---cCCCcEEEEEEccCCCCEEEEE-eCCCeEEEEeC
Q 011126          388 SSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRV---F---SHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEV  458 (493)
Q Consensus       388 ~~~V~~l~~sp~g-~l~sgs-~Dg~V~lWd~~~~~~~~~---~---~h~~~V~~v~fsp~d~~~l~sg-s~Dg~V~IWdl  458 (493)
                      ...+.++.|+|+| +++++. ....|.+|+......+..   .   ........+.|+| +++++.+. -.+++|.+|++
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEe
Confidence            3457899999999 565554 456888888654332221   1   2456789999999 88877554 46899999998


Q ss_pred             CCCeEE---E-----ec------------CCCCCeEEEEEccCCCEEEEeec
Q 011126          459 RRCQVV---D-----YT------------DIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       459 ~~~~~~---~-----~~------------~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ...+..   .     ..            ........+.++|||++|+++..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr  274 (365)
T d1jofa_         223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence            765321   1     10            11123567899999999988753

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.59  E-value=2.7e-05  Score=73.58  Aligned_cols=229  Identities=10%  Similarity=0.073  Sum_probs=132.8

Q ss_pred             cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC----CcEEEEecCC
Q 011126          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----GTVRVWKVIE  315 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~V~iWdl~~  315 (493)
                      .++|.++|++.++-...++|..|+.......       ..+.........|+|+++|+++++...+    +.|...+...
T Consensus        44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~-------~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIK-------RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEE-------EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             eCEECCCCCEEEEECCCCEEEEEECCCCeEE-------EEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            3789999998888778899988876643311       1123345568899999999977765432    2344444444


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  395 (493)
                      ..........................++..+......        ...+.+..++...     +.+..+...-...+.|+
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~--------~~~g~v~~~~~dg-----~~~~~~~~~~~~pnGia  183 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYST--------NPLGGVYYVSPDF-----RTVTPIIQNISVANGIA  183 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTT--------BCCEEEEEECTTS-----CCEEEEEEEESSEEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccccc--------cCcceeEEEeccc-----ceeEEEeeccceeeeee
Confidence            4332222221111222222233333333332221111        0111222222211     12222222334567899


Q ss_pred             EeCCC--eEEEEeCCCeEEEEECCCC-cEEEE--------ecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 011126          396 WSKNG--FLLSSSADKTVRLWQVGID-RCLRV--------FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (493)
Q Consensus       396 ~sp~g--~l~sgs~Dg~V~lWd~~~~-~~~~~--------~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~  464 (493)
                      |+|++  ++++-+..+.|..|++... .....        +......-.|++.+ +|++.++....+.|.+||. .++++
T Consensus       184 ~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p-~G~~l  261 (319)
T d2dg1a1         184 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPI  261 (319)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEE
T ss_pred             eccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC-CCCEEEEEcCCCEEEEECC-CCcEE
Confidence            99998  4566677899999998642 11111        11223467899999 9999999999999999996 56665


Q ss_pred             Eec-------CCCCCeEEEEEccCCCEEEEeec
Q 011126          465 DYT-------DIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       465 ~~~-------~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ...       .+...+++++|.|++..+++.+.
T Consensus       262 ~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         262 GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            322       23346889999999887766554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.59  E-value=5.1e-07  Score=87.18  Aligned_cols=236  Identities=8%  Similarity=-0.085  Sum_probs=127.8

Q ss_pred             ceeccCCCeE--E-eeecCCe--EEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE----------CC
Q 011126          241 ATLKPGDHEL--T-LGQRMRR--VRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------ED  305 (493)
Q Consensus       241 ~~fsp~g~~l--a-sgs~dg~--V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~D  305 (493)
                      ++..++++..  + ....++.  |.+||.....       ....+..+...  .++|+|||++|+..+          .|
T Consensus        25 ~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~-------~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          25 HGPGAISRRSHITLPAYFAGTTENWVSCAGCGV-------TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCCTTEEEEEECTTTCSSEEEEEEETTTTE-------EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cccCCCCcceeEEeeccCCCcceEEEEeCCCCc-------EEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            5667777743  2 2445555  5566765433       22234445444  589999999888764          37


Q ss_pred             CcEEEEecCCCeeeeeeeccCC-------CCceEEEeeCCCCc---------eeeeeccCcccccee-------------
Q 011126          306 GTVRVWKVIEHERLDGFDVQDT-------DPSCLYFTINHLSQ---------LIPIDVDKEKIDKTK-------------  356 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-------------  356 (493)
                      ++|++||..+++.+..+..+..       .+..+.+++++...         +..++....+.....             
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~  175 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAA  175 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEET
T ss_pred             CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCC
Confidence            7899999999998887765432       23345555544322         222222222211111             


Q ss_pred             --eeecCCCceEEEcCCCceee--cccceEEEecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-----
Q 011126          357 --SLRKSSDLTCVVLPPKVFRL--LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----  426 (493)
Q Consensus       357 --~~~~s~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-----  426 (493)
                        .+..+.++.+..+.......  .......+..+...+..+.+.+++ .+.+.  .+.+.++++..+.......     
T Consensus       176 ~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~  253 (368)
T d1mdah_         176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNE  253 (368)
T ss_dssp             TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSC
T ss_pred             ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeeccccc
Confidence              11122233332222111000  000001122344445566777777 33333  4556666766554433221     


Q ss_pred             --------CCCcEEEEEEccCCCCEEEEEeCC---------CeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCE-EEEe
Q 011126          427 --------HNNYVTSVAFNPVDDNYFISGSID---------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKV-RQNS  488 (493)
Q Consensus       427 --------h~~~V~~v~fsp~d~~~l~sgs~D---------g~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~-l~s~  488 (493)
                              .......++++| ++..++....+         ..|.+||..+++.+....+...+.+++|+|||+. ++++
T Consensus       254 ~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s  332 (368)
T d1mdah_         254 SGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             THHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEE
T ss_pred             ceeeeeeecCCCceeEEEcC-CCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEE
Confidence                    011223578888 66665544322         3599999999998876667778999999999974 4443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.59  E-value=2.9e-07  Score=90.84  Aligned_cols=179  Identities=12%  Similarity=0.037  Sum_probs=108.3

Q ss_pred             EEeeecCCeEEEEECCCcccccc--c-------cc--------------cceeeecccCCEEEEEEccCCCEEEEEE-CC
Q 011126          250 LTLGQRMRRVRVHPVKKQSRELS--S-------LY--------------TGQEFLAHEGSILTMKFSLDGQYLASGG-ED  305 (493)
Q Consensus       250 lasgs~dg~V~vwd~~~~~~~~~--~-------~~--------------~~~~l~~H~~~I~~l~fspdg~~Lasgs-~D  305 (493)
                      +++|+.+|.|+||++........  .       .+              .......|.-.+....++|||++|+... .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56788999999999865432110  0       00              0001123555566667789999986664 67


Q ss_pred             CcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEe
Q 011126          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (493)
Q Consensus       306 g~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  385 (493)
                      ..|.++|+.+++....+..+                                                            
T Consensus        94 ~rVavIDl~t~k~~~ii~iP------------------------------------------------------------  113 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIP------------------------------------------------------------  113 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECT------------------------------------------------------------
T ss_pred             CEEEEEECCCCcEeeEEecC------------------------------------------------------------
Confidence            88999999998876655433                                                            


Q ss_pred             cCCCCEeEEEEeCCC---eEEEEeCC-----------------CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEE
Q 011126          386 GHSSEVLDLSWSKNG---FLLSSSAD-----------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (493)
Q Consensus       386 ~h~~~V~~l~~sp~g---~l~sgs~D-----------------g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~  445 (493)
                       +...+..++|+|+|   +++..+.+                 ..+..+|..+.+....+........+.|+| ++++++
T Consensus       114 -~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~sp-dGk~a~  191 (441)
T d1qnia2         114 -NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADY-TGKYAT  191 (441)
T ss_dssp             -TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECS-SSSEEE
T ss_pred             -CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECC-CCCEEE
Confidence             12334444444444   22222211                 123446666666666555445566677777 666666


Q ss_pred             EEeC-----------------------------------------CCeEEEEeCCCCeEEEecCCCCCeEEEEEccCCCE
Q 011126          446 SGSI-----------------------------------------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKV  484 (493)
Q Consensus       446 sgs~-----------------------------------------Dg~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~  484 (493)
                      +.+.                                         ++.+.|++....+++.+.........+.++|||++
T Consensus       192 vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGky  271 (441)
T d1qnia2         192 STCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKY  271 (441)
T ss_dssp             EEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCE
T ss_pred             EEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCE
Confidence            5553                                         34556666665555555445556788999999999


Q ss_pred             EEEeec
Q 011126          485 RQNSAC  490 (493)
Q Consensus       485 l~s~s~  490 (493)
                      +++++.
T Consensus       272 l~~~~~  277 (441)
T d1qnia2         272 FIANGK  277 (441)
T ss_dssp             EEEECT
T ss_pred             EEEeCC
Confidence            988764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=0.00013  Score=65.87  Aligned_cols=203  Identities=11%  Similarity=0.107  Sum_probs=112.6

Q ss_pred             eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCC---cEEEEecCCCeeeeeeeccCCCCceEEE
Q 011126          258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG---TVRVWKVIEHERLDGFDVQDTDPSCLYF  334 (493)
Q Consensus       258 ~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg---~V~iWdl~~~~~~~~~~~~~~~~~~~~~  334 (493)
                      .|.|-|......        +.+..+...+..-+|||||++||-.....   .+.+.+...+.... +...........+
T Consensus        20 ~l~i~d~dG~~~--------~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   90 (269)
T d2hqsa1          20 ELRVSDYDGYNQ--------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAF   90 (269)
T ss_dssp             EEEEEETTSCSC--------EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEE
T ss_pred             EEEEEcCCCCCc--------EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE-Eeeeeccccccee
Confidence            466767654332        23445677788999999999998765433   35555655554332 2222222333334


Q ss_pred             eeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCe--
Q 011126          335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKT--  410 (493)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~--  410 (493)
                      ++++...+.... ....            .....+...     .........+........+++.+  .+++...++.  
T Consensus        91 spdg~~i~~~~~-~~~~------------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (269)
T d2hqsa1          91 SPDGSKLAFALS-KTGS------------LNLYVMDLA-----SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ  152 (269)
T ss_dssp             CTTSSEEEEEEC-TTSS------------CEEEEEETT-----TCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             cCCCCeeeEeee-cCCc------------cceeecccc-----cccceeeeeccccccccccccccccceecccccCCce
Confidence            333322211111 1100            001110000     01112222334444556677776  5556655654  


Q ss_pred             EEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC---eEEEEeCCCCeEEEecCCCCCeEEEEEccCCCEEEE
Q 011126          411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKVRQN  487 (493)
Q Consensus       411 V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg---~V~IWdl~~~~~~~~~~~~~~I~sv~~spdG~~l~s  487 (493)
                      |.+.++..+.......+........|+| ++..++..+.++   .|.+.+...+.. .............|+|||+.|+.
T Consensus       153 i~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f  230 (269)
T d2hqsa1         153 VYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIY  230 (269)
T ss_dssp             EEEEETTSSCCEECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEE
T ss_pred             Eeeeecccccceeeeccccccccccccc-ccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEE
Confidence            5555666665555555777888899999 888888776654   455566665554 34445556778899999999876


Q ss_pred             ee
Q 011126          488 SA  489 (493)
Q Consensus       488 ~s  489 (493)
                      .+
T Consensus       231 ~s  232 (269)
T d2hqsa1         231 SS  232 (269)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.40  E-value=0.00013  Score=67.03  Aligned_cols=224  Identities=11%  Similarity=0.168  Sum_probs=129.8

Q ss_pred             cccceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCC-CEEEEE-ECCCcEEEEecCC
Q 011126          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASG-GEDGTVRVWKVIE  315 (493)
Q Consensus       238 ~~~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasg-s~Dg~V~iWdl~~  315 (493)
                      ...++++++|+++++-....+|++|+......  ..+.....-.+....-..+.+.++. .++++. +.++.|.+++. .
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTSCEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCCCCEE--EEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            34589999999888878889999998653221  1110000001122234556665543 344433 34556777765 4


Q ss_pred             CeeeeeeeccCC-CCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE--ecCCCCEe
Q 011126          316 HERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF--QGHSSEVL  392 (493)
Q Consensus       316 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~  392 (493)
                      +.....+..... .+..+.  ......++.....              ...+.+++..     .+.+..+  ..+.....
T Consensus       102 g~~~~~~~~~~~~~p~~~a--vd~~G~i~v~~~~--------------~~~~~~~~~~-----g~~~~~~g~~~~~~~~~  160 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVT--VDNKGRIIVVECK--------------VMRVIIFDQN-----GNVLHKFGCSKHLEFPN  160 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEE--ECTTSCEEEEETT--------------TTEEEEECTT-----SCEEEEEECTTTCSSEE
T ss_pred             ccceeecCCCcccccceec--cccCCcEEEEeec--------------cceeeEeccC-----Cceeecccccccccccc
Confidence            444444422211 112222  2222223222221              1222222221     1222332  23566788


Q ss_pred             EEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeC-CCeEEEEeCCCCeEEE-e
Q 011126          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVVD-Y  466 (493)
Q Consensus       393 ~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~-Dg~V~IWdl~~~~~~~-~  466 (493)
                      .+++.+++ ++++....+.|++||.. ++.+..+.   .......|++.| +++++++-.. ++.|.+|+. +++.+. +
T Consensus       161 ~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~-~G~~~~~~  237 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQLISAL  237 (279)
T ss_dssp             EEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT-TSCEEEEE
T ss_pred             eeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECC-CCCEEEEE
Confidence            99999998 77788888999999964 56677775   445688999999 8998887654 457999985 566543 2


Q ss_pred             --cCCCCCeEEEEEccCCCEEEEe
Q 011126          467 --TDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       467 --~~~~~~I~sv~~spdG~~l~s~  488 (493)
                        .......+.|++.|||+++++.
T Consensus       238 ~~~~~~~~p~~vav~~dG~l~V~~  261 (279)
T d1q7fa_         238 ESKVKHAQCFDVALMDDGSVVLAS  261 (279)
T ss_dssp             EESSCCSCEEEEEEETTTEEEEEE
T ss_pred             eCCCCCCCEeEEEEeCCCcEEEEe
Confidence              2233468999999999866554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.39  E-value=2.6e-05  Score=71.25  Aligned_cols=219  Identities=9%  Similarity=-0.002  Sum_probs=127.4

Q ss_pred             cceeccCCCeEEe-eecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126          240 SATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       240 ~~~fsp~g~~las-gs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~  318 (493)
                      .++++++|.+.++ ....+.|..++..+.......      ..+ ......|+++++|+++++....+.+++++-.+...
T Consensus        18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~------~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP------FNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEEC----CEEECC------CCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec------cCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeecccee
Confidence            4899999996665 455677777766544322211      111 12346789999999888777777777766544443


Q ss_pred             eeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEEEe
Q 011126          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWS  397 (493)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~s  397 (493)
                      +..... ...+..+++  .....++..+....              .+..+......     ...+ .........|++.
T Consensus        91 ~~~~~~-~~~p~~iav--d~~g~i~v~d~~~~--------------~~~~~~~~~~~-----~~~~~~~~~~~p~~i~~~  148 (260)
T d1rwia_          91 VLPFDG-LNYPEGLAV--DTQGAVYVADRGNN--------------RVVKLAAGSKT-----QTVLPFTGLNDPDGVAVD  148 (260)
T ss_dssp             ECCCCS-CCSEEEEEE--CTTCCEEEEEGGGT--------------EEEEECTTCSS-----CEECCCCSCCSCCEEEEC
T ss_pred             eeeeee-eeecccccc--cccceeEeeccccc--------------cccccccccce-----eeeeeecccCCcceeeec
Confidence            322211 111222222  22223333222211              11122111100     0111 1112345789999


Q ss_pred             CCC-eEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe-cCCCCCeE
Q 011126          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIREIVS  474 (493)
Q Consensus       398 p~g-~l~sgs~Dg~V~lWd~~~~~~~~~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~-~~~~~~I~  474 (493)
                      +++ ++++...++.|..++.......... ........|++.+ +++++++....+.|..++......... ...-...+
T Consensus       149 ~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~  227 (260)
T d1rwia_         149 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPL  227 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEE
T ss_pred             CCCCEeeeccccccccccccccceeeeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeE
Confidence            998 7777788889999998765443332 3556778999999 899988888889999998765543332 22234678


Q ss_pred             EEEEccCCCEEEEe
Q 011126          475 AVCYCPDGKVRQNS  488 (493)
Q Consensus       475 sv~~spdG~~l~s~  488 (493)
                      .|+++++|.++++-
T Consensus       228 ~i~~d~~g~l~vad  241 (260)
T d1rwia_         228 AVAVDSDRTVYVAD  241 (260)
T ss_dssp             EEEECTTCCEEEEE
T ss_pred             EEEEeCCCCEEEEE
Confidence            99999999877653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.31  E-value=3.3e-05  Score=74.41  Aligned_cols=102  Identities=13%  Similarity=0.170  Sum_probs=68.9

Q ss_pred             CCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCCcEEEEec--------------------CCCcEEEEEEccCCCCEEE
Q 011126          388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS--------------------HNNYVTSVAFNPVDDNYFI  445 (493)
Q Consensus       388 ~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~--------------------h~~~V~~v~fsp~d~~~l~  445 (493)
                      ......++|+|++  .+++.-.+++|.+|++..+.......                    +......+.++| ++++|+
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~ly  270 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMF  270 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEE
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEE
Confidence            4567889999999  44666678999999987654322211                    123466899999 999988


Q ss_pred             EEeC------CCeEEEEeCCCC-eEE------EecCCCCCeEEEEEcc-CCCEEEEeec
Q 011126          446 SGSI------DGKVRIWEVRRC-QVV------DYTDIREIVSAVCYCP-DGKVRQNSAC  490 (493)
Q Consensus       446 sgs~------Dg~V~IWdl~~~-~~~------~~~~~~~~I~sv~~sp-dG~~l~s~s~  490 (493)
                      ++..      .+.|.+|++... .+.      ...........++++| +|++|+++..
T Consensus       271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~  329 (365)
T d1jofa_         271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeC
Confidence            7643      234777877642 221      1223344567899998 8999988764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.06  E-value=0.0032  Score=57.96  Aligned_cols=221  Identities=7%  Similarity=-0.007  Sum_probs=128.0

Q ss_pred             ceecc-CCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeee
Q 011126          241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (493)
Q Consensus       241 ~~fsp-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~  319 (493)
                      ..|++ ++.+..+--..++|.-|+..+.....         ......+.++.+.++|.++++ +.+ .|.++|..+++..
T Consensus        23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~---------~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~   91 (295)
T d2ghsa1          23 PTFDPASGTAWWFNILERELHELHLASGRKTV---------HALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLT   91 (295)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEEEE---------EECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEE
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCeEEE---------EECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceee
Confidence            34665 44444554567888888877654321         123456889999999877664 555 4889999888754


Q ss_pred             eeeeccCCC--CceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEe
Q 011126          320 DGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (493)
Q Consensus       320 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  397 (493)
                      .........  .............+...........        ..+.++...       ...+..+...-...+.++|+
T Consensus        92 ~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~--------~~g~l~~~~-------~g~~~~~~~~~~~~Ng~~~s  156 (295)
T d2ghsa1          92 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAET--------GAGSIYHVA-------KGKVTKLFADISIPNSICFS  156 (295)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCT--------TCEEEEEEE-------TTEEEEEEEEESSEEEEEEC
T ss_pred             EEeeeecCCCcccceeeEECCCCCEEEEeccccccc--------cceeEeeec-------CCcEEEEeeccCCcceeeec
Confidence            333222211  1122223333333333322111100        011111111       11122222223346789999


Q ss_pred             CCC--eEEEEeCCCeEEEEECCCCc------EEE--Ee-cCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-
Q 011126          398 KNG--FLLSSSADKTVRLWQVGIDR------CLR--VF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-  465 (493)
Q Consensus       398 p~g--~l~sgs~Dg~V~lWd~~~~~------~~~--~~-~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-  465 (493)
                      +++  ++++-+..+.|..|++....      ...  .+ ........+++.. +|++.++.-..+.|..||.. ++++. 
T Consensus       157 ~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp~-G~~~~~  234 (295)
T d2ghsa1         157 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD-GNHIAR  234 (295)
T ss_dssp             TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT-CCEEEE
T ss_pred             CCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCceEEecCC-CcEeeE
Confidence            998  56777788999999875321      111  11 1445688999999 99998888888999999964 55554 


Q ss_pred             ecCCCCCeEEEEEc-cCCCEEEEee
Q 011126          466 YTDIREIVSAVCYC-PDGKVRQNSA  489 (493)
Q Consensus       466 ~~~~~~~I~sv~~s-pdG~~l~s~s  489 (493)
                      +.-....++++||- ||.+.|++.+
T Consensus       235 i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         235 YEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             ecCCCCceEEEEEeCCCCCEEEEEE
Confidence            43334579999995 7877666543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.92  E-value=0.0013  Score=61.31  Aligned_cols=204  Identities=9%  Similarity=0.087  Sum_probs=112.1

Q ss_pred             cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecc-cCCEEEEEEccCCCEEEEEECC-------------
Q 011126          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGGED-------------  305 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~Lasgs~D-------------  305 (493)
                      .++|.+++..++++.....|...+.......+...    ...+. -...+.+.+.++|.+.++-...             
T Consensus        75 Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~----~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKK----DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEEECSSSSEEEEEETTTEEEEEETTSCEEECCSB----CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             eEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEec----cccccccCCCcEEEECCCCCEEEecCccCcccccccceecc
Confidence            48899999988887777778888876544322111    01111 1135789999999887764221             


Q ss_pred             CcEEEEecC-CCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCc-eeecc-cceE
Q 011126          306 GTVRVWKVI-EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-FRLLE-KPLH  382 (493)
Q Consensus       306 g~V~iWdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~-~~~~  382 (493)
                      ..=+||.+. .++.. .+......+..+.+.+.....           .....+.......+..++... ..+.. +...
T Consensus       151 ~~G~v~~~~~dg~~~-~~~~~~~~pNGi~~~~d~d~~-----------~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~  218 (314)
T d1pjxa_         151 KFGSIYCFTTDGQMI-QVDTAFQFPNGIAVRHMNDGR-----------PYQLIVAETPTKKLWSYDIKGPAKIENKKVWG  218 (314)
T ss_dssp             SCEEEEEECTTSCEE-EEEEEESSEEEEEEEECTTSC-----------EEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred             CCceEEEEeecCcee-EeeCCcceeeeeEECCCCCcc-----------eeEEEEEeecccceEEeeccCccccceeeEEE
Confidence            111333332 22221 111111122334444432211           011111222222333222110 00000 0111


Q ss_pred             EEec-CCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCC-EEEEEeCCCeEEEEeC
Q 011126          383 EFQG-HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEV  458 (493)
Q Consensus       383 ~~~~-h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~-~l~sgs~Dg~V~IWdl  458 (493)
                      .+.+ +....-.|++.++| ++++....+.|.+||...+..+..+. ....+++++|.| +++ ++++.+.+|.|...++
T Consensus       219 ~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         219 HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEEC
T ss_pred             EccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeC-CCCEEEEEECCCCcEEEEEC
Confidence            2222 22345679999999 66777778999999998888777665 456789999999 776 6677778899998887


Q ss_pred             CC
Q 011126          459 RR  460 (493)
Q Consensus       459 ~~  460 (493)
                      ..
T Consensus       298 ~~  299 (314)
T d1pjxa_         298 QR  299 (314)
T ss_dssp             SS
T ss_pred             CC
Confidence            63

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.88  E-value=0.0013  Score=59.95  Aligned_cols=182  Identities=10%  Similarity=0.138  Sum_probs=113.1

Q ss_pred             CEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCC------CceEEEeeCCCCceeeeeccCccccceeeee
Q 011126          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTD------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLR  359 (493)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (493)
                      .-..|+++++|+++++-..+..|++||.. ++.+..+......      +..+.+.......++.              .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--------------~   88 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVT--------------E   88 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEE--------------E
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccccccccccccccee--------------c
Confidence            35789999999988877778899999964 5555554322111      1111111111111111              1


Q ss_pred             cCCCceEEEcCCCceeecccceEEEe-cCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEE
Q 011126          360 KSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSV  434 (493)
Q Consensus       360 ~s~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v  434 (493)
                      ......+..++..     .+....+. ........+++.++| ++++....+.+.+++.. ++.+..+.   +......+
T Consensus        89 ~~~~~~i~~~~~~-----g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i  162 (279)
T d1q7fa_          89 RSPTHQIQIYNQY-----GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGV  162 (279)
T ss_dssp             CGGGCEEEEECTT-----SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEE
T ss_pred             cCCcccccccccc-----ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccccccccccccee
Confidence            1111122222221     12223332 234567889999988 66666677788888854 56666664   66788899


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCCCCeEEEEEccCCCEEEEee
Q 011126          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      ++.+ +++++++....+.|++||.....+..+  .+.......|++.|+|+++++-.
T Consensus       163 ~~d~-~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~  218 (279)
T d1q7fa_         163 VVND-KQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADN  218 (279)
T ss_dssp             EECS-SSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred             eecc-ceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEEC
Confidence            9999 889999988899999999865444443  23445688999999999777643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.77  E-value=0.0013  Score=59.10  Aligned_cols=70  Identities=17%  Similarity=0.195  Sum_probs=49.1

Q ss_pred             eeccC--CCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEEC-CC-----cEEEEec
Q 011126          242 TLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DG-----TVRVWKV  313 (493)
Q Consensus       242 ~fsp~--g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg-----~V~iWdl  313 (493)
                      .++|+  |+.+|.. .++.|.+.++.....        +.+..+.+.+...+|||||++||-... ++     .|.++++
T Consensus         5 ~~sPdi~G~~v~f~-~~~dl~~~d~~~g~~--------~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           5 LLNPDIHGDRIIFV-CCDDLWEHDLKSGST--------RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             CEEEEEETTEEEEE-ETTEEEEEETTTCCE--------EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred             ccCCCCCCCEEEEE-eCCcEEEEECCCCCE--------EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEe
Confidence            46788  9988765 456788888875542        135567788899999999999886532 22     3777777


Q ss_pred             CCCeeee
Q 011126          314 IEHERLD  320 (493)
Q Consensus       314 ~~~~~~~  320 (493)
                      .+++...
T Consensus        76 ~~g~~~~   82 (281)
T d1k32a2          76 ENGEIKR   82 (281)
T ss_dssp             TTTEEEE
T ss_pred             cCCceEE
Confidence            7776543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.76  E-value=0.0016  Score=58.81  Aligned_cols=189  Identities=11%  Similarity=0.036  Sum_probs=109.4

Q ss_pred             cceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCeee
Q 011126          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (493)
Q Consensus       240 ~~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~  319 (493)
                      .++++++|.++++....+.|++++.........        .........|++.++++++++-..+..+.+++.......
T Consensus        61 gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~--------~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~  132 (260)
T d1rwia_          61 GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP--------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT  132 (260)
T ss_dssp             CEEECTTCCEEEEETTTEEEEECTTCSCCEECC--------CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE
T ss_pred             EEEEcCCCCEEEeeeeeceeeeeeeccceeeee--------eeeeeecccccccccceeEeeccccccccccccccceee
Confidence            478999999888877777777765443221111        112345789999999998777666666777765443322


Q ss_pred             eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEEEeC
Q 011126          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSK  398 (493)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp  398 (493)
                      .........+..+.+.+.  ..++.....              ...+..++.....     ...+ .........|++.+
T Consensus       133 ~~~~~~~~~p~~i~~~~~--g~~~v~~~~--------------~~~i~~~d~~~~~-----~~~~~~~~~~~p~gi~~d~  191 (260)
T d1rwia_         133 VLPFTGLNDPDGVAVDNS--GNVYVTDTD--------------NNRVVKLEAESNN-----QVVLPFTDITAPWGIAVDE  191 (260)
T ss_dssp             ECCCCSCCSCCEEEECTT--CCEEEEEGG--------------GTEEEEECTTTCC-----EEECCCSSCCSEEEEEECT
T ss_pred             eeeecccCCcceeeecCC--CCEeeeccc--------------cccccccccccce-----eeeeeccccCCCccceeee
Confidence            211122223334443322  222222221              1223333322111     1111 13445678999999


Q ss_pred             CC-eEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          399 NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       399 ~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~--h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      +| ++++....+.|..++...... ..+.  .-...+.|++++ +++++++-..+++|+..+..
T Consensus       192 ~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~-~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         192 AGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             TCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECT-TCCEEEEEGGGTEEEEECCC
T ss_pred             eeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeC-CCCEEEEECCCCEEEEEeCC
Confidence            98 777777788888887654432 2332  335678999999 88888887777777766543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.66  E-value=0.0027  Score=58.52  Aligned_cols=181  Identities=10%  Similarity=0.043  Sum_probs=106.1

Q ss_pred             CEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCce
Q 011126          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT  365 (493)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  365 (493)
                      .+..++++|||+++++...+++|..|+.... . ..+......+..+.+.++  ..++........+.........    
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~-~~~~~~~~~~~gla~~~d--G~l~v~~~~~~~~~~~~~~~~~----  100 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-Q-QIHATVEGKVSGLAFTSN--GDLVATGWNADSIPVVSLVKSD----  100 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-E-EEEEECSSEEEEEEECTT--SCEEEEEECTTSCEEEEEECTT----
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-E-EEEEcCCCCcceEEEcCC--CCeEEEecCCceEEEEEecccc----
Confidence            5778999999999999988998888875433 2 222222333444444333  2344433333222111111100    


Q ss_pred             EEEcCCCceeecccceEEE--ecCCCCEeEEEEeCCC-eEEEEeCCCeEEEEECCCCcEEEEec-----------CCCcE
Q 011126          366 CVVLPPKVFRLLEKPLHEF--QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----------HNNYV  431 (493)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~g-~l~sgs~Dg~V~lWd~~~~~~~~~~~-----------h~~~V  431 (493)
                                   .....+  .........+++.+++ ++++.+.++.|..++...+.......           ....+
T Consensus       101 -------------~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (302)
T d2p4oa1         101 -------------GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  167 (302)
T ss_dssp             -------------SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             -------------cceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccc
Confidence                         001111  2244568899999999 77777888899888888765433221           12345


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEE---EecCCCCCeEEEEEccCCCEEEEee
Q 011126          432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       432 ~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~---~~~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                      ..+.+..  +.++++.+..+.|+.+++......   ...........+++.++|.++++..
T Consensus       168 ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~  226 (302)
T d2p4oa1         168 NGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH  226 (302)
T ss_dssp             EEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB
T ss_pred             ccccccC--CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEc
Confidence            6677754  456667778899999988754322   1111223456688889988766643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.46  E-value=0.017  Score=53.35  Aligned_cols=185  Identities=11%  Similarity=0.118  Sum_probs=100.0

Q ss_pred             CEEEEEEccCCCEEEEEECCCcEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCce
Q 011126          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT  365 (493)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  365 (493)
                      .+..++|.++|++.++-...+.|+.|+..+......+......+..+.+..+  ..++........          ....
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~d--G~l~va~~~~~~----------~~~~  108 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD--GRLFVCYLGDFK----------STGG  108 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT--SCEEEEECTTSS----------SCCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCC--CCEEEEecCCCc----------ccee
Confidence            4568999999997777778888988988776554444333333334444332  233322211100          0111


Q ss_pred             EEEcCCCceeecccceEEEec---CCCCEeEEEEeCCC-eEEEEeC------CCeEEEEECCCCcEEEEecCCCcEEEEE
Q 011126          366 CVVLPPKVFRLLEKPLHEFQG---HSSEVLDLSWSKNG-FLLSSSA------DKTVRLWQVGIDRCLRVFSHNNYVTSVA  435 (493)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~---h~~~V~~l~~sp~g-~l~sgs~------Dg~V~lWd~~~~~~~~~~~h~~~V~~v~  435 (493)
                      +...+....     .+..+..   -...+..+++.++| ++++...      -+.+..++...+........-...+.|+
T Consensus       109 i~~~~~~~~-----~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia  183 (319)
T d2dg1a1         109 IFAATENGD-----NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIA  183 (319)
T ss_dssp             EEEECTTSC-----SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEE
T ss_pred             EEEEcCCCc-----eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeee
Confidence            222221111     1111111   12357789999999 4444322      1234445544443333333344578899


Q ss_pred             EccCCCCEE-EEEeCCCeEEEEeCCCC-e---EE-----EecCCCCCeEEEEEccCCCEEEEe
Q 011126          436 FNPVDDNYF-ISGSIDGKVRIWEVRRC-Q---VV-----DYTDIREIVSAVCYCPDGKVRQNS  488 (493)
Q Consensus       436 fsp~d~~~l-~sgs~Dg~V~IWdl~~~-~---~~-----~~~~~~~~I~sv~~spdG~~l~s~  488 (493)
                      |+| +++.| ++-+..++|+.|++... .   ..     ...........+++.++|++.++.
T Consensus       184 ~s~-dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~  245 (319)
T d2dg1a1         184 LST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  245 (319)
T ss_dssp             ECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             ecc-ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEE
Confidence            999 88755 55567899999998632 1   11     112222335678888888876654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.011  Score=57.95  Aligned_cols=241  Identities=10%  Similarity=0.063  Sum_probs=121.5

Q ss_pred             ceeccCCCeEEeee---------cCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEE
Q 011126          241 ATLKPGDHELTLGQ---------RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (493)
Q Consensus       241 ~~fsp~g~~lasgs---------~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iW  311 (493)
                      ..|+||+++++...         ..+.+.|+|+.+....  .+.   ........+....|||||+.||-.. ++.|.+.
T Consensus        66 ~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~--~l~---~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ--SLD---PPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE--ECC---CTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             eEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee--ecc---CccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence            56899999887753         3567888998765432  111   1122344566789999999998765 5678888


Q ss_pred             ecCCCeeeeeeeccCC------------------CCceEEEeeCCCCceeeeeccCccccceeee---------------
Q 011126          312 KVIEHERLDGFDVQDT------------------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSL---------------  358 (493)
Q Consensus       312 dl~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  358 (493)
                      +..++..++.......                  ....+.|++++...+ ....+...+......               
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~ia-f~~~D~s~V~~~~~~~~~~~~~p~~~~~~Y  218 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA-YAAINDSRVPIMELPTYTGSIYPTVKPYHY  218 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE-EEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEE-EEEecccccceeecccccccccceeeeeec
Confidence            8876655443322111                  112344555554322 222222221111110               


Q ss_pred             --ecC--CCceEEEcCCCcee--ecccceEEEecCCCCEeEEEEeCCC-eE-EEEeCC---CeEEEEECCCCcEEEEec-
Q 011126          359 --RKS--SDLTCVVLPPKVFR--LLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSAD---KTVRLWQVGIDRCLRVFS-  426 (493)
Q Consensus       359 --~~s--~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~V~~l~~sp~g-~l-~sgs~D---g~V~lWd~~~~~~~~~~~-  426 (493)
                        .+.  ....+.+++.....  ....+.........-+..+.|+|++ ++ .....+   ..|.++|..++++...+. 
T Consensus       219 p~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e  298 (465)
T d1xfda1         219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED  298 (465)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             cccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE
Confidence              011  11122333321110  0001111111222346788999998 33 333333   358889999998776654 


Q ss_pred             -CCCcE----EEEEEccCCCCEE--EEEe-CCC--eEEEEeC-------CCCeEEEecCCCCCeEEE-EEccCCCEEEEe
Q 011126          427 -HNNYV----TSVAFNPVDDNYF--ISGS-IDG--KVRIWEV-------RRCQVVDYTDIREIVSAV-CYCPDGKVRQNS  488 (493)
Q Consensus       427 -h~~~V----~~v~fsp~d~~~l--~sgs-~Dg--~V~IWdl-------~~~~~~~~~~~~~~I~sv-~~spdG~~l~s~  488 (493)
                       ....|    ....|.| +++.+  +..+ .+|  .++...+       ..+.+..+....-.|+.+ .|+++++.+...
T Consensus       299 ~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~  377 (465)
T d1xfda1         299 ESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL  377 (465)
T ss_dssp             ECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE
T ss_pred             cCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEE
Confidence             22222    3467888 77643  2222 233  3333332       122223344444456665 688888776543


Q ss_pred             e
Q 011126          489 A  489 (493)
Q Consensus       489 s  489 (493)
                      +
T Consensus       378 a  378 (465)
T d1xfda1         378 S  378 (465)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00044  Score=68.54  Aligned_cols=99  Identities=14%  Similarity=0.085  Sum_probs=68.7

Q ss_pred             CEeEEEEeCCC-eEEEE---------eCCCeEEEEECCCCcEEEEec---CCCcEEEEEEccCCCCEEEEEeCCCeEEEE
Q 011126          390 EVLDLSWSKNG-FLLSS---------SADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sg---------s~Dg~V~lWd~~~~~~~~~~~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IW  456 (493)
                      .+....|||++ +++..         +..+.+.++|+.++.......   ....+....|+| +|+.||-.. ++.|++.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeecc-CCceEEEEe-cceEEEE
Confidence            45567789998 55544         335678999999887654432   234566689999 999988765 6789999


Q ss_pred             eCCCCeEEEec--CCCCC-----------------eEEEEEccCCCEEEEeec
Q 011126          457 EVRRCQVVDYT--DIREI-----------------VSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       457 dl~~~~~~~~~--~~~~~-----------------I~sv~~spdG~~l~s~s~  490 (493)
                      +..++..+++.  +....                 -.++-|||||++||...-
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence            98877655332  22121                 257789999999998653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.86  E-value=0.0046  Score=55.30  Aligned_cols=93  Identities=10%  Similarity=0.156  Sum_probs=68.5

Q ss_pred             EEeCC--C-eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeC-C-----CeEEEEeCCCCeEEE
Q 011126          395 SWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-D-----GKVRIWEVRRCQVVD  465 (493)
Q Consensus       395 ~~sp~--g-~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~-D-----g~V~IWdl~~~~~~~  465 (493)
                      ..+|+  | .++-.+ ++.|.+.|+..++..+...+...+...+|+| ||+.||-... +     ..|.++++.+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45677  7 554433 4568888999988876666778899999999 9998886542 2     248888998888776


Q ss_pred             ecCCC-------CCeEEEEEccCCCEEEEee
Q 011126          466 YTDIR-------EIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       466 ~~~~~-------~~I~sv~~spdG~~l~s~s  489 (493)
                      +....       .....+.|+|||+.|+...
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEE
Confidence            54332       3457789999999988754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.58  E-value=0.077  Score=50.41  Aligned_cols=188  Identities=12%  Similarity=0.084  Sum_probs=110.6

Q ss_pred             EEEEECCCcEEEEecCCCeeeeeeeccCCCCce--------------------EEEe---------eCCCCceeeeeccC
Q 011126          299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC--------------------LYFT---------INHLSQLIPIDVDK  349 (493)
Q Consensus       299 Lasgs~Dg~V~iWdl~~~~~~~~~~~~~~~~~~--------------------~~~~---------~~~~~~~~~~~~~~  349 (493)
                      +.||+..|.|+|+-+.+++.+..+......+..                    ..+.         ..........-.+.
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            578999999999999999888777643321110                    0000         01111111111122


Q ss_pred             ccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCCC---eEEEEeCCC-----------------
Q 011126          350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADK-----------------  409 (493)
Q Consensus       350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g---~l~sgs~Dg-----------------  409 (493)
                      ..-.++.++....+..+.+++.+.++...  +..+ .....+..+...+++   +++..+.+.                 
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~k--Ii~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDA--ILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEE--EEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeE--EEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence            22234445555566667777666655321  1122 244566777766544   777766533                 


Q ss_pred             -eEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCC-------------------------------------
Q 011126          410 -TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-------------------------------------  451 (493)
Q Consensus       410 -~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg-------------------------------------  451 (493)
                       .+.+.|..+.+....+.-......+.++| +|+++++.+.+.                                     
T Consensus       173 ~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei  251 (459)
T d1fwxa2         173 NVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  251 (459)
T ss_dssp             EEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             eEEEEEecCCceEEEEeeeCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence             36778998888877776556677899999 999988877542                                     


Q ss_pred             -eEEEEeCCCC---eEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          452 -KVRIWEVRRC---QVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       452 -~V~IWdl~~~---~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                       .+.+-|.++.   .++.+.........+..+|||+++++++.
T Consensus       252 ngV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGK  294 (459)
T d1fwxa2         252 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK  294 (459)
T ss_dssp             TTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECT
T ss_pred             CCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCC
Confidence             1334443321   12223333445677899999999998874

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.24  E-value=0.18  Score=45.53  Aligned_cols=100  Identities=17%  Similarity=0.144  Sum_probs=70.5

Q ss_pred             CCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-----CCCcEEEEEEccCCCCEEEEEeCC----CeEEEEeCC
Q 011126          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSID----GKVRIWEVR  459 (493)
Q Consensus       389 ~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-----h~~~V~~v~fsp~d~~~l~sgs~D----g~V~IWdl~  459 (493)
                      ..+.++++.++|.|+.++.+ -|.++|..+++......     ....++.+.+.| +|++.++....    +.-.+|.+.
T Consensus        59 ~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~  136 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA  136 (295)
T ss_dssp             SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec
Confidence            45678889888844445554 58899999887654443     234688999999 89877765432    345677777


Q ss_pred             CCeEEEecCCCCCeEEEEEccCCCEEEEeec
Q 011126          460 RCQVVDYTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       460 ~~~~~~~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      .+++......-...+.++|+|+++.++.+..
T Consensus       137 ~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt  167 (295)
T d2ghsa1         137 KGKVTKLFADISIPNSICFSPDGTTGYFVDT  167 (295)
T ss_dssp             TTEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred             CCcEEEEeeccCCcceeeecCCCceEEEeec
Confidence            7776655444456789999999997766543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.68  E-value=0.18  Score=46.80  Aligned_cols=97  Identities=12%  Similarity=0.151  Sum_probs=59.7

Q ss_pred             CEeEEEEeCCC-eEEEEe---------------CCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEE-EEeCCCe
Q 011126          390 EVLDLSWSKNG-FLLSSS---------------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGK  452 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~sgs---------------~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~-sgs~Dg~  452 (493)
                      ..++|++..++ .++|-.               .-++..+|....+........-...+.|+++| ++++|+ +-+..++
T Consensus       151 ~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~-d~~~lyVa~t~~~~  229 (340)
T d1v04a_         151 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISP-DGKYVYIAELLAHK  229 (340)
T ss_dssp             SEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECT-TSSEEEEEEGGGTE
T ss_pred             CccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECC-CCCEEEEEeCCCCe
Confidence            45666666666 555521               01234555555555444444556789999999 777665 4556789


Q ss_pred             EEEEeCCCCe---EEEecCCCCCeEEEEEccC-CCEEEE
Q 011126          453 VRIWEVRRCQ---VVDYTDIREIVSAVCYCPD-GKVRQN  487 (493)
Q Consensus       453 V~IWdl~~~~---~~~~~~~~~~I~sv~~spd-G~~l~s  487 (493)
                      |++|++....   ..........+-.+.+.++ |.+.+.
T Consensus       230 i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         230 IHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             EEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             EEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            9999987443   2234446667788888864 555444

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.50  E-value=0.73  Score=43.48  Aligned_cols=234  Identities=11%  Similarity=-0.012  Sum_probs=125.0

Q ss_pred             ccCCCeEEeee-cCCeEEEEECCCccccccccccceeee-cccCCEEEEEEcc--CCCEEEEEECCC-------------
Q 011126          244 KPGDHELTLGQ-RMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSL--DGQYLASGGEDG-------------  306 (493)
Q Consensus       244 sp~g~~lasgs-~dg~V~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fsp--dg~~Lasgs~Dg-------------  306 (493)
                      .+||++|.+.. .+.+|.+-|+...+.       .+.+. .....+..+...+  +-.|++.++.+.             
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt-------~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKC-------DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEE-------EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             ccceeEEEEEcCCCceEEEEECcceee-------eEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            35888887765 678999999875432       12111 2344566666654  555888777643             


Q ss_pred             -----cEEEEecCCCeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceE---------------
Q 011126          307 -----TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC---------------  366 (493)
Q Consensus       307 -----~V~iWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~---------------  366 (493)
                           .+.+.|..+.+....+..... +..+.+.+++...+.. ..+.................+               
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~-ld~~~~s~dGK~af~T-syNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGN-LDNCDADYEGKWAFST-SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSC-CCCEEECSSSSEEEEE-ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCC-hhccccCCCCCEEEEE-eccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                 266788888887776665442 3333443333211111 111110000000000000011               


Q ss_pred             --------EEcCCCceeecccceEEEecCCCCEeEEEEeCCC--eEEEEeCCCeEEEEECCCC------------cEEEE
Q 011126          367 --------VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID------------RCLRV  424 (493)
Q Consensus       367 --------~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~l~sgs~Dg~V~lWd~~~~------------~~~~~  424 (493)
                              .+.+..... ....+..+. -......+..+|+|  .++++..+.+|.|+|++.-            .....
T Consensus       247 k~~eingV~VVD~~~~~-~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e  324 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEA-SSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  324 (459)
T ss_dssp             CSEEETTEEEEECSGG---CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred             CcEEeCCceeecccccC-CcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee
Confidence                    111111000 001111111 12234578899999  5566778999999998631            11222


Q ss_pred             ecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCC----------eEEEecCCCCCeEEEE------EccCCCEEEEe
Q 011126          425 FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC----------QVVDYTDIREIVSAVC------YCPDGKVRQNS  488 (493)
Q Consensus       425 ~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~----------~~~~~~~~~~~I~sv~------~spdG~~l~s~  488 (493)
                      ....-....-+|.. .|+...|--.|..|.-|++...          .++...+....+-.++      ..|||++|++.
T Consensus       325 ~elglgPLht~fd~-~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~  403 (459)
T d1fwxa2         325 PELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL  403 (459)
T ss_dssp             CBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             cccCcCccccccCC-CceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEe
Confidence            23445566778988 7877777778999999998532          4444333333333332      46899999887


Q ss_pred             e
Q 011126          489 A  489 (493)
Q Consensus       489 s  489 (493)
                      .
T Consensus       404 n  404 (459)
T d1fwxa2         404 S  404 (459)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.34  E-value=1  Score=41.25  Aligned_cols=75  Identities=11%  Similarity=0.090  Sum_probs=48.8

Q ss_pred             ceeccCCCeEEeeecCC-----------eEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECC-CcE
Q 011126          241 ATLKPGDHELTLGQRMR-----------RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-GTV  308 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg-----------~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-g~V  308 (493)
                      .....+|+.++.|+...           .+.+||...........    ....|........+.++|++++.|+.+ ..+
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----TVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----EECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCC----CCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            44566788888877421           37789988765432111    112333334566788999999988765 579


Q ss_pred             EEEecCCCeee
Q 011126          309 RVWKVIEHERL  319 (493)
Q Consensus       309 ~iWdl~~~~~~  319 (493)
                      .+||..+..-.
T Consensus       101 ~~yd~~~~~w~  111 (387)
T d1k3ia3         101 SLYDSSSDSWI  111 (387)
T ss_dssp             EEEEGGGTEEE
T ss_pred             eEecCccCccc
Confidence            99998776543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.98  E-value=0.18  Score=50.42  Aligned_cols=79  Identities=8%  Similarity=0.026  Sum_probs=54.3

Q ss_pred             CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEE--EEEccCCC-EE
Q 011126          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA--VCYCPDGK-VR  485 (493)
Q Consensus       409 g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~s--v~~spdG~-~l  485 (493)
                      |.|.-+|+.+++.+-.+.+..+..+-.+.- .+.++++|+.||.++-+|.++++.+........+.+  +.|..||+ |+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEe-cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            678889999999887776433332222222 567888899999999999999999954433333332  66777996 55


Q ss_pred             EEe
Q 011126          486 QNS  488 (493)
Q Consensus       486 ~s~  488 (493)
                      ++.
T Consensus       523 ~v~  525 (571)
T d2ad6a1         523 GSM  525 (571)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.84  E-value=0.47  Score=47.22  Aligned_cols=80  Identities=9%  Similarity=0.086  Sum_probs=55.6

Q ss_pred             CCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCe--EEEEEccCCC-E
Q 011126          408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV--SAVCYCPDGK-V  484 (493)
Q Consensus       408 Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I--~sv~~spdG~-~  484 (493)
                      .|.|.-+|+.+++.+-.+....++..-.+.. .+.++.+|+.||.++-+|..+|+++........+  .-+.|..||+ |
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            3678889999999888776444443322333 6778888999999999999999999433332222  2267788995 5


Q ss_pred             EEEe
Q 011126          485 RQNS  488 (493)
Q Consensus       485 l~s~  488 (493)
                      +++.
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.43  E-value=0.38  Score=47.83  Aligned_cols=79  Identities=14%  Similarity=0.165  Sum_probs=53.3

Q ss_pred             CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeEE--EEEccCCC-EE
Q 011126          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA--VCYCPDGK-VR  485 (493)
Q Consensus       409 g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~s--v~~spdG~-~l  485 (493)
                      |.|.-||+.+++.+-.+.+..+...=...- .+.+|.+|+.||.++.+|..+|+.+........+.+  +.|..||+ |+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            468888999998887776443332222232 678888999999999999999999853333222222  55677886 55


Q ss_pred             EEe
Q 011126          486 QNS  488 (493)
Q Consensus       486 ~s~  488 (493)
                      ++.
T Consensus       536 ~v~  538 (573)
T d1kb0a2         536 SVA  538 (573)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.90  E-value=2.1  Score=38.27  Aligned_cols=224  Identities=12%  Similarity=0.151  Sum_probs=120.0

Q ss_pred             ceeccCCCeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEECCCcEEEEecCCC-eee
Q 011126          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH-ERL  319 (493)
Q Consensus       241 ~~fsp~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~-~~~  319 (493)
                      .-.+|..+.||.-+ ..++.|+|++...+...       +. ....|.--+|-.+ +.|+-... ..|+-|++... .+.
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks-------~~-~~e~VvfWkWis~-~~L~lVT~-taVYHW~~~g~s~P~  136 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKA-------HT-MTDDVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPV  136 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEE-------EE-CSSCCCEEEESSS-SEEEEECS-SEEEEEESSSSCCCE
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhce-------EE-cCCCcEEEEecCC-CEEEEEcC-CceEEEcccCCCCch
Confidence            45688888888765 56899999986553221       11 2346766788644 45655544 47999999543 233


Q ss_pred             eeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEEecCCCCEeEEEEeCC
Q 011126          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (493)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  399 (493)
                      +.+..+..-.         ..+++.+..+..........-...+.. +.-....+....+.-+.+.||.+....+....+
T Consensus       137 k~fdR~~~L~---------~~QIInY~~d~~~kW~~l~GI~~~~~~-i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~  206 (327)
T d1utca2         137 KMFDRHSSLA---------GCQIINYRTDAKQKWLLLTGISAQQNR-VVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGN  206 (327)
T ss_dssp             EEEECCGGGT---------TCEEEEEEECTTSCEEEEEEEEEETTE-EEEEEEEEETTTTEEEEECCSEEEEEEECCTTC
T ss_pred             hhhhhccccc---------CceEEEEEECCCCCEEEEEeEecCCCc-eeEEEEEEEeccCcCccccceeeeeEEEEcCCC
Confidence            3333322211         122222222222211111111111111 112223333344556677788765555544322


Q ss_pred             C----eEEEEe---CCCeEEEEECCCCcE---------EEEe-c---CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCC
Q 011126          400 G----FLLSSS---ADKTVRLWQVGIDRC---------LRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (493)
Q Consensus       400 g----~l~sgs---~Dg~V~lWd~~~~~~---------~~~~-~---h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~  459 (493)
                      .    +++-+.   ..+.++|-++.....         +..+ .   ..+...++..++ .-.++..-+.-|.|++||+.
T Consensus       207 ~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDle  285 (327)
T d1utca2         207 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLE  285 (327)
T ss_dssp             SSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETT
T ss_pred             CCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcc
Confidence            1    333222   236788888865211         1111 1   357778999999 78888888999999999999


Q ss_pred             CCeEEEe-cCCCCCeEEEEEccCCCEEE
Q 011126          460 RCQVVDY-TDIREIVSAVCYCPDGKVRQ  486 (493)
Q Consensus       460 ~~~~~~~-~~~~~~I~sv~~spdG~~l~  486 (493)
                      ++.++.. .-..++|-.-+-+.+...++
T Consensus       286 Tgt~i~~nRIs~~~iF~~a~~~~~~Gi~  313 (327)
T d1utca2         286 TGTCIYMNRISGETIFVTAPHEATAGII  313 (327)
T ss_dssp             TCCEEEEEECCSSCEEEEEEETTTTEEE
T ss_pred             cccEEEEeecCCCceEEeccCCCCceEE
Confidence            9988743 33344554334343333333

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.30  E-value=0.43  Score=47.31  Aligned_cols=79  Identities=6%  Similarity=0.105  Sum_probs=54.6

Q ss_pred             CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCCeE--EEEEccCCC-EE
Q 011126          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS--AVCYCPDGK-VR  485 (493)
Q Consensus       409 g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~I~--sv~~spdG~-~l  485 (493)
                      +.|.-||+.+++.+-.+....+..+-.+.- .+.++.+|+.||.++-+|..+++++........+.  -+.|..||+ ||
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            578889999999888776444433322333 57788899999999999999999994333322222  256778896 55


Q ss_pred             EEe
Q 011126          486 QNS  488 (493)
Q Consensus       486 ~s~  488 (493)
                      ++.
T Consensus       517 ~v~  519 (560)
T d1kv9a2         517 AIM  519 (560)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.89  E-value=2.7  Score=39.94  Aligned_cols=36  Identities=8%  Similarity=-0.010  Sum_probs=28.0

Q ss_pred             ccCCEEEEEEccCCCEEEEEECCCcEEEEecCCCee
Q 011126          283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (493)
Q Consensus       283 H~~~I~~l~fspdg~~Lasgs~Dg~V~iWdl~~~~~  318 (493)
                      .-..-++|+|.|||++|++--..|.|++++..++..
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~   60 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSV   60 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE
Confidence            345678999999999887764579999998776653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.92  E-value=1.4  Score=43.82  Aligned_cols=79  Identities=9%  Similarity=0.025  Sum_probs=53.5

Q ss_pred             CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCC--eEEEEEccCCC-EE
Q 011126          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI--VSAVCYCPDGK-VR  485 (493)
Q Consensus       409 g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~~~~~~--I~sv~~spdG~-~l  485 (493)
                      |.|.-||+.+++.+-...+..++..-.+.- .+.++..|+.||.++-+|..+|+++........  -.-+.|..||+ |+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence            678899999999887765444333323333 677888899999999999999999943222221  12245677886 55


Q ss_pred             EEe
Q 011126          486 QNS  488 (493)
Q Consensus       486 ~s~  488 (493)
                      ++.
T Consensus       532 av~  534 (596)
T d1w6sa_         532 AIY  534 (596)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.75  E-value=3.7  Score=35.65  Aligned_cols=215  Identities=7%  Similarity=-0.032  Sum_probs=105.7

Q ss_pred             CeEEeeecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEEEEE-CCCcEEEEecCCCeeeeeeeccC
Q 011126          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHERLDGFDVQD  326 (493)
Q Consensus       248 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~V~iWdl~~~~~~~~~~~~~  326 (493)
                      .+|+.+.. +.|+-.++......  .......+..+...|..|+|.+..+.|+-.. .++.|+..++........+....
T Consensus         2 ~fLl~s~~-~~I~~~~ld~~~~~--~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~   78 (263)
T d1npea_           2 THLLFAQT-GKIERLPLERNTMK--KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (263)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBC--GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             CEEEEeCC-CeEEEEECCCcccc--ccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecc
Confidence            34444433 45666665543321  2222223444555688899998777666554 56778888876554433332222


Q ss_pred             CCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEEEEeCCC-eE-E
Q 011126          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKNG-FL-L  403 (493)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~g-~l-~  403 (493)
                      ..+..+++.... ..++..+.              ....+.+.+..     .+....+ ......+..|++.|.. +| .
T Consensus        79 ~~p~~iAvD~~~-~~lY~~d~--------------~~~~I~~~~~d-----g~~~~~l~~~~l~~p~~l~vdp~~g~ly~  138 (263)
T d1npea_          79 GSPEGIALDHLG-RTIFWTDS--------------QLDRIEVAKMD-----GTQRRVLFDTGLVNPRGIVTDPVRGNLYW  138 (263)
T ss_dssp             CCEEEEEEETTT-TEEEEEET--------------TTTEEEEEETT-----SCSCEEEECSSCSSEEEEEEETTTTEEEE
T ss_pred             ccccEEEEeccC-CeEEEecc--------------CCCEEEEEecC-----CceEEEEecccccCCcEEEEecccCcEEE
Confidence            222333321111 11221111              11122222211     1111112 2234568899999876 44 3


Q ss_pred             EEeCCCeEEEE--ECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCCeEEEEEc
Q 011126          404 SSSADKTVRLW--QVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYC  479 (493)
Q Consensus       404 sgs~Dg~V~lW--d~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~-~~~~~~~I~sv~~s  479 (493)
                      +-...+..+||  ++.......... .-...+.+++.+..+++..+-...++|...++....... ..+.. ...+|++.
T Consensus       139 t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~  217 (263)
T d1npea_         139 TDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY  217 (263)
T ss_dssp             EECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE
T ss_pred             eecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE
Confidence            43333333454  454433333332 335678999998344444555567899999998765443 22322 34567764


Q ss_pred             cCCCEEEEe
Q 011126          480 PDGKVRQNS  488 (493)
Q Consensus       480 pdG~~l~s~  488 (493)
                        +..|..+
T Consensus       218 --~~~lYwt  224 (263)
T d1npea_         218 --GKNLYYT  224 (263)
T ss_dssp             --TTEEEEE
T ss_pred             --CCEEEEE
Confidence              3444433

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.24  E-value=5.2  Score=34.65  Aligned_cols=216  Identities=9%  Similarity=-0.001  Sum_probs=114.1

Q ss_pred             cccceeccCCCeEEee-ecCCeEEEEECCCccccccccccceeeecccCCEEEEEEccCCCEEE-EEECCCcEEEEecCC
Q 011126          238 HGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIE  315 (493)
Q Consensus       238 ~~~~~fsp~g~~lasg-s~dg~V~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~V~iWdl~~  315 (493)
                      +..++|++..+.|.-. ...+.|+..++.....+.       .+......+..|++..-+..|+ +-...+.|.+.++..
T Consensus        38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~-------v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-------IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-------EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE-------EEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            3447788777666554 456778888776443221       1122234688999987566665 444567899999865


Q ss_pred             CeeeeeeeccCCCCceEEEeeCCCCceeeeeccCccccceeeeecCCCceEEEcCCCceeecccceEEE-ecCCCCEeEE
Q 011126          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDL  394 (493)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l  394 (493)
                      ......+......+..+.+.+.. ..++.......            ...+...+..     .+....+ ...-.....|
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~------------~~~I~r~~~d-----G~~~~~i~~~~~~~P~gl  172 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRD------------NPKIETSHMD-----GTNRRILAQDNLGLPNGL  172 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSS------------SCEEEEEETT-----SCCCEEEECTTCSCEEEE
T ss_pred             ceEEEEecccccCCcEEEEeccc-CcEEEeecCCC------------CcEEEEecCC-----CCCceeeeeecccccceE
Confidence            54322222222222233222211 11111111111            1111111110     1111111 1223456789


Q ss_pred             EEeCCC--eEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEec--CCC
Q 011126          395 SWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--DIR  470 (493)
Q Consensus       395 ~~sp~g--~l~sgs~Dg~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~~--~~~  470 (493)
                      ++.+.+  ++.+-...+.|...++........+.......+|++.  ++.++.+-...+.|...|..+++.+...  ...
T Consensus       173 aiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~  250 (263)
T d1npea_         173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ  250 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC
T ss_pred             EEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC
Confidence            998776  4455567789999998766554444433345678875  3455556556788999999888766432  233


Q ss_pred             CCeEEEEEcc
Q 011126          471 EIVSAVCYCP  480 (493)
Q Consensus       471 ~~I~sv~~sp  480 (493)
                      .....|...|
T Consensus       251 ~~~~gi~v~~  260 (263)
T d1npea_         251 TRLYGITIAL  260 (263)
T ss_dssp             CCCCCEEEEC
T ss_pred             CCcceEEEeC
Confidence            3444555443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.13  E-value=1.4  Score=41.66  Aligned_cols=99  Identities=15%  Similarity=0.153  Sum_probs=62.8

Q ss_pred             CEeEEEEeCCC-eEE-EEeCC----CeEEEEECCCCcEEEEecCCCcEEEEEEccCCCCEEEEEeCC-------------
Q 011126          390 EVLDLSWSKNG-FLL-SSSAD----KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-------------  450 (493)
Q Consensus       390 ~V~~l~~sp~g-~l~-sgs~D----g~V~lWd~~~~~~~~~~~h~~~V~~v~fsp~d~~~l~sgs~D-------------  450 (493)
                      .+..++++|++ +++ +-+..    -+|++.|+.+++.+...-.......++|.+ ++..|+-...|             
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcC-CCCEEEEEEeccccCccccccccc
Confidence            34456789998 443 43333    469999999998765321111125688999 88876644332             


Q ss_pred             ---CeEEEEeCCCCe---EEEe--cCCCCCeEEEEEccCCCEEEEee
Q 011126          451 ---GKVRIWEVRRCQ---VVDY--TDIREIVSAVCYCPDGKVRQNSA  489 (493)
Q Consensus       451 ---g~V~IWdl~~~~---~~~~--~~~~~~I~sv~~spdG~~l~s~s  489 (493)
                         ..|+.|.+.+.+   .+.+  ......+..+..++||++++...
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence               268888887653   2222  23334577788999999987654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.12  E-value=3.2  Score=37.72  Aligned_cols=83  Identities=12%  Similarity=0.134  Sum_probs=49.7

Q ss_pred             CCCeEEEEECCCCc-EE---EEec--CCCcEEEEEEccCCCCEEEEEeC---C------------CeEEEEeCCCCeEEE
Q 011126          407 ADKTVRLWQVGIDR-CL---RVFS--HNNYVTSVAFNPVDDNYFISGSI---D------------GKVRIWEVRRCQVVD  465 (493)
Q Consensus       407 ~Dg~V~lWd~~~~~-~~---~~~~--h~~~V~~v~fsp~d~~~l~sgs~---D------------g~V~IWdl~~~~~~~  465 (493)
                      ...+|-+|++.... .+   .++.  .....+.|.+.. ++.+++|-..   +            +...+|....++...
T Consensus       122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~  200 (340)
T d1v04a_         122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV  200 (340)
T ss_dssp             TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEE
T ss_pred             CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEE
Confidence            34678888775332 12   2222  335678899888 8888887311   0            223444444443333


Q ss_pred             ecCCCCCeEEEEEccCCCEEEEeec
Q 011126          466 YTDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       466 ~~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                      ....-...+.|+++||+++|+++..
T Consensus       201 ~~~~l~~pNGI~~s~d~~~lyVa~t  225 (340)
T d1v04a_         201 VAEGFDFANGINISPDGKYVYIAEL  225 (340)
T ss_dssp             EEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             EcCCCCccceeEECCCCCEEEEEeC
Confidence            2333456899999999999988754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=89.10  E-value=0.83  Score=41.93  Aligned_cols=80  Identities=11%  Similarity=0.218  Sum_probs=56.0

Q ss_pred             eEEEEECCCCcEEEE--e--cCCCcEEEEEEccCCCCEEEEEeCC-CeEEEEeCCCCeEEEecCCC--CCeEEEEEccCC
Q 011126          410 TVRLWQVGIDRCLRV--F--SHNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQVVDYTDIR--EIVSAVCYCPDG  482 (493)
Q Consensus       410 ~V~lWd~~~~~~~~~--~--~h~~~V~~v~fsp~d~~~l~sgs~D-g~V~IWdl~~~~~~~~~~~~--~~I~sv~~spdG  482 (493)
                      .+.+||..+++-...  .  .+.......++.+ ++.+++.|+.+ ..+.+||..+..........  ..-..++..+||
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG  131 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG  131 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCC
Confidence            377999988754321  1  2434445667888 99999998766 58999999988776533222  223467788899


Q ss_pred             CEEEEeec
Q 011126          483 KVRQNSAC  490 (493)
Q Consensus       483 ~~l~s~s~  490 (493)
                      ++++.++.
T Consensus       132 ~v~v~GG~  139 (387)
T d1k3ia3         132 RVFTIGGS  139 (387)
T ss_dssp             CEEEECCC
T ss_pred             ceeeeccc
Confidence            99999875

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.52  E-value=11  Score=34.68  Aligned_cols=96  Identities=10%  Similarity=0.007  Sum_probs=67.2

Q ss_pred             CEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEccCCCCEEEEEeCCCeEEEEeCCCCeEEEe--
Q 011126          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--  466 (493)
Q Consensus       390 ~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~~-h~~~V~~v~fsp~d~~~l~sgs~Dg~V~IWdl~~~~~~~~--  466 (493)
                      .|..++|+.+ .|+.. .++.+..++...-....... ...++..+.++|   ..++....+|.+.++++.+++....  
T Consensus        88 ~v~~vafs~d-~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD-QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT-EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC-EEEEE-eCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccC
Confidence            5788999765 44433 45668888877644433332 556788888877   4677778899999999998754321  


Q ss_pred             ----cCCCCCeEEEEEccCCCEEEEeec
Q 011126          467 ----TDIREIVSAVCYCPDGKVRQNSAC  490 (493)
Q Consensus       467 ----~~~~~~I~sv~~spdG~~l~s~s~  490 (493)
                          ..-...+.+++|++.|+.++++..
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeCC
Confidence                122467899999999999888754

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.78  E-value=17  Score=33.10  Aligned_cols=58  Identities=10%  Similarity=0.020  Sum_probs=39.4

Q ss_pred             CCEeEEEEeCCCeEEEEeCCCeEEEEECCCCcEEEEe------cCCCcEEEEEEccCCCCEEEEEe
Q 011126          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDNYFISGS  448 (493)
Q Consensus       389 ~~V~~l~~sp~g~l~sgs~Dg~V~lWd~~~~~~~~~~------~h~~~V~~v~fsp~d~~~l~sgs  448 (493)
                      .++..+.++|. .++....++.+-++++..+......      .-...+.+++|++ .+..++++.
T Consensus       126 ~~~~~~~~~p~-~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~-kgkq~v~~~  189 (381)
T d1xipa_         126 KPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD-RSFQSFAWR  189 (381)
T ss_dssp             SCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT-SCEEEEEEE
T ss_pred             ccccceecCCc-eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeC-CcEEEEEeC
Confidence            44667777776 4555666888999998877543322      2346688888888 777777764