Citrus Sinensis ID: 011136

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490---
Protein Sequence
MESPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKTEILRT
Secondary Structure (PSIPRED)
cccccEEEEEccEEEcccccccccEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHcccEEEEEEccccccccccccHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHccccccEEEEccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHHHcccccEEEEcccccHHHHHHHHccccccEEEEccccHHHHHHccccccHHHHHcccccEEEEEccccEEEEEccHHHHHHHHHHHHHcccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHccHHHHcccccccEEEEEEEccccccccccccccccccccccccccccccccccEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEcccccHHHHcccccEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHcccccEEEEEccccccHHHHEcccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHccccccEEEEccccccHHHHHccEEcHHHHHHccccEEEEccccccEEccccHHHHHHHHHHHHccccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHccHHHHHHHHcccccEEEEEccccccEEEEccHHHHccccEEEEHHHHHHHHHHccccEEEEEcHHHHcc
Coil and Loop (DISEMBL)
mespnllvasgsklvsggmrknptlicvpimgeSVDKMVVDMGKANASGADLVEIRLdglknfnpreniktlikespvptlftyrpiweggqydgdeneRVDVLRLAMELGADYIDVELQVAREFNdsirgkkpekcKVIVSshnyqytpsveDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAkfggfltfgtlengivsapgqptiKDLLDLYnfrqmgpdtkvfgiigkpvghskspilyneafksvgfNGVFVHLLVDDIAKFFQtyssndfagfsctiphkeaavkccDEVDTVAKSIGAVNciirrqsdgklfgyntdyvGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKTEILRT
Flexible Loop (DISEMBL)
mespnllvasgsklvsggmrknpTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGlknfnpreniktlikespvptlFTYRpiweggqydgdeNERVDVLRLAMELGADYIDVELQVAREfndsirgkkpekCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKsigavnciirrqsdgklfgYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKTEILRT
Low Complexity Region (SEG)
MESPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIgaggagkalaygakakgaRVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKTEILRT
Disordered region (IsUnstruct)
*********************NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKT*****
Disordered Region (DISOPRED)
*******************RKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLE****SAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKTEILR*
Disordered Region (DISEMBL)
MESPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKTEILRT
Disordered Region (DISPRO)
***PNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGR******VSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKTEILRT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKTEILRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	493	2.2.26 [Sep-21-2011]
Q9SQT8	603	Bifunctional 3-dehydroqui	yes	no	0.847	0.693	0.735	1e-169
Q74ZZ1	1577	Pentafunctional AROM poly	yes	no	0.752	0.235	0.280	5e-34
C5DN02	1579	Pentafunctional AROM poly	yes	no	0.711	0.222	0.303	7e-33
C4R4R8	1545	Pentafunctional AROM poly	yes	no	0.608	0.194	0.345	4e-32
Q6CJC4	1578	Pentafunctional AROM poly	yes	no	0.705	0.220	0.310	5e-32
Q6FIV4	1579	Pentafunctional AROM poly	yes	no	0.711	0.222	0.316	2e-31
C5FQ73	1571	Pentafunctional AROM poly	N/A	no	0.716	0.224	0.296	9e-31
C4JYG6	1580	Pentafunctional AROM poly	N/A	no	0.691	0.215	0.313	1e-30
A4RD09	1590	Pentafunctional AROM poly	N/A	no	0.693	0.215	0.291	1e-30
Q9P7R0	1573	Pentafunctional AROM poly	yes	no	0.711	0.223	0.310	2e-30

>sp|Q9SQT8|DHQSD_ARATH Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1

 Score =  594 bits (1531), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 311/423 (73%), Positives = 358/423 (84%), Gaps = 5/423 (1%)

Query: 1   MESPNLLVASGS---KLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRL 57
           ME  N+ VAS S   ++ S  + KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRL
Sbjct: 68  MEPSNVYVASNSTEMEIGSHDIVKNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRL 127

Query: 58  DGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV 117
           D LK+FNP E++KT+IK+SP+PTLFTYRP WEGGQY+GDENER DVLRLAMELGADYIDV
Sbjct: 128 DWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDV 187

Query: 118 ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL 177
           ELQVA EF  SI GKKP K KVIVSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+
Sbjct: 188 ELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAV 247

Query: 178 DITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTI 237
           DI DVAR+F IT  +QVP IGLVMGERGL+SRILC+KFGG+LTFGTL++  VSAPGQPTI
Sbjct: 248 DIADVARMFHITSKAQVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTI 307

Query: 238 KDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFF 297
           KDLLDLYNFR++GPDTKV+GIIGKPV HSKSPI++N+AFKSV FNGV+VHLLVD++  F 
Sbjct: 308 KDLLDLYNFRRIGPDTKVYGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFL 367

Query: 298 QTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGA 357
           Q YSS+DFAGFSCTIPHKEAA++CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+
Sbjct: 368 QAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGS 427

Query: 358 ISAIEDGLR--GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG 415
           ISAIEDGLR  G  +     SS LA K  VVIGAGGAGKALAYGAK KGA+VVIANRTY 
Sbjct: 428 ISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYE 487

Query: 416 ESL 418
            +L
Sbjct: 488 RAL 490

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 5

>sp|Q74ZZ1|ARO1_ASHGO Pentafunctional AROM polypeptide OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ARO1 PE=3 SV=2

 Score =  145 bits (367), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 207/406 (50%), Gaps = 35/406 (8%)

Query: 21   KNPTLICVPIMGESVDKMVVDMGKANAS--GADLVEIRLDGLKNFNPRENIKTL----IK 74
            K  T +C+     +   ++ +M +   +  G + VE+R+D L+N++    +K L    + 
Sbjct: 1065 KRSTFVCL-----TFQNLLPEMERIKEAVYGCEAVEVRVDHLENYSQDFVLKQLTALRLA 1119

Query: 75   ESPVPTLFTYRPIWEGGQY-DGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKK 133
               +P +FT R   +GG++ D D +   D+L + ++ G +++D+EL +    +  I  K+
Sbjct: 1120 TDSLPIVFTIRTKKQGGKFLDNDYSTLEDLLTVGLKAGVEFLDLELTLPSPIHQRILNKR 1179

Query: 134  PEKCKVIVSSHNY--QYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQI-TV 190
              K ++I S H++  +++    +  +  A+  A   D +KF  TA    D   + +  + 
Sbjct: 1180 -YKTRIIGSHHDFSGEFSWEHPEWEHRYAQALAMQVDAIKFVATAKGFGDNLSLEEFRSK 1238

Query: 191  HSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMG 250
            H+  P+I + M E G +SR+L       +T   L     +APGQ T++ + +LY      
Sbjct: 1239 HTDKPLIAINMRECGKLSRVLNTILTP-ITSDVLPQA--AAPGQLTLRQINELYASIGGL 1295

Query: 251  PDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQT-YSSNDFAGFS 309
               K+F ++G P+GHS+SPIL+N  + S+G    F     D      ++  S  D  G +
Sbjct: 1296 RPKKMF-VVGSPIGHSRSPILHNTGYNSLGLPYTFDKFETDSAEIVKKSLLSREDLGGIA 1354

Query: 310  CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
             TIP K+  ++  DE+   AK IGAVN II ++ DG+  G+NTD++G   S I +G+   
Sbjct: 1355 VTIPLKQDIMQYLDELTDSAKCIGAVNTIIPKK-DGRFIGHNTDWLGIKNSLIANGVPEH 1413

Query: 369  LNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRT 413
            +N +G           +++G+GG  +A AY   + + + + + NRT
Sbjct: 1414 VNTAG-----------LIVGSGGTARAAAYAFHEMQCSTIYMINRT 1448

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C5DN02|ARO1_LACTC Pentafunctional AROM polypeptide OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=ARO1 PE=3 SV=1

 Score =  142 bits (357), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 189/376 (50%), Gaps = 25/376 (6%)

Query: 48   SGADLVEIRLDGLKNFNPRENIKTL----IKESPVPTLFTYRPIWEGGQY-DGDENERVD 102
            +G   VE+R+D LK+++     K L    +  S +P +FT R   +GGQ+ D D++    
Sbjct: 1088 AGCSAVELRVDQLKSYDLDFVAKQLSILRLASSSLPIIFTIRTKSQGGQFPDDDKSTLGS 1147

Query: 103  VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNY--QYTPSVEDLSNLVA 160
            +L LA+E+G +++D+EL ++ E   S+   K    K+I S H++  ++  +  +  N   
Sbjct: 1148 LLSLALEVGVEFVDMELTLSSELQYSLVNNK-RNTKIIGSHHDFDAKFDWNDSEWENRYN 1206

Query: 161  RIQASGADIVKFATTALDITDVARVFQITV-HSQVPIIGLVMGERGLISRILCAKFGGFL 219
            +  +   D+VKF  TA D  D  ++ Q  + H+  P+I + M + G +SR+L       +
Sbjct: 1207 QALSLDVDVVKFVGTAKDFEDNLKLEQFRLQHTAKPLIAINMTDVGKMSRVLNTVLTP-V 1265

Query: 220  TFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSV 279
            T   L +   SAPGQ T+  + ++Y     G   K F ++G P+ HS+SP+L+N  +K +
Sbjct: 1266 TSSLLPSA--SAPGQLTLSQINEIYTLLG-GFSAKNFYVVGSPISHSRSPVLHNTGYKIL 1322

Query: 280  GFNGVFVHLLVDDIAKFF-QTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCI 338
            G    F        ++   +  S     G + TIP K   ++  DE+   AK IGAVN +
Sbjct: 1323 GLPHKFEKFETSSASEVKDKLLSKCKLGGLAVTIPLKLDIMEFMDELSESAKLIGAVNTV 1382

Query: 339  IRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAY 398
            I    DGK  G NTD++G  ++          ++ GV   + G    VIGAGG  +A  Y
Sbjct: 1383 IPL-GDGKFKGDNTDWLGIYNSF---------LANGVPENVRGNSGFVIGAGGTSRAAVY 1432

Query: 399  GAKAKG-ARVVIANRT 413
                 G + + + NRT
Sbjct: 1433 ALHQLGCSDIHLVNRT 1448

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C4R4R8|ARO1_PICPG Pentafunctional AROM polypeptide OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=ARO1 PE=3 SV=1

 Score =  139 bits (351), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/321 (34%), Positives = 173/321 (53%), Gaps = 21/321 (6%)

Query: 48   SGADLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVD-V 103
            +G D VE+R+D LK  +       I  L  ++ VP LFT R   +GG++  D  E ++ +
Sbjct: 1067 NGCDAVELRVDLLKQHDSHFISNQIGILRNQTSVPILFTIRTKSQGGRFPDDSYEDIERL 1126

Query: 104  LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYT---PSVEDLSNLVA 160
            L LA++LG +Y+D+EL +     DS+  K+ +  K+I S H++  T    +VE  +  + 
Sbjct: 1127 LNLAIKLGVEYVDLELSLPESLLDSVASKR-QFTKIIGSHHDFSGTVKWNNVEWENKYLL 1185

Query: 161  RIQASGADIVKFATTALDITDVARVFQI-TVHSQVPIIGLVMGERGLISRILCAKFGGFL 219
             ++ +  DI+KF  TA  + D   +    ++H+  P IG+ MG  G +SR+    F   L
Sbjct: 1186 ALKLN-VDIIKFVGTATSLNDNWELEHFRSLHTDKPFIGINMGPLGKVSRV----FNTIL 1240

Query: 220  TFGTLENGIVSA-PGQPTIKDLLDLYNFRQMGPDT-KVFGIIGKPVGHSKSPILYNEAFK 277
            T  T ++   SA PGQ T+K++ +   F Q G  + K F I+GKP+ HSKSP L+   + 
Sbjct: 1241 TPVTHKDLPSSAAPGQLTLKEINEY--FGQFGGSSRKKFYIVGKPISHSKSPELHKTFYD 1298

Query: 278  SVGFNGVFVHLLVDDIAKFFQ--TYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAV 335
              G +  F     DD AK F      +++  G + TIP K   +K  +E+   AKSIGA+
Sbjct: 1299 EFGLSHTFDKFETDDAAKVFNDLVKGNDELGGCAVTIPLKIDMLKYVNELTDSAKSIGAL 1358

Query: 336  NCIIRRQSDGKLFGYNTDYVG 356
            N II    DG+  G NTD++G
Sbjct: 1359 NTII-PIGDGRFIGDNTDWIG 1378

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Pichia pastoris (strain GS115 / ATCC 20864) (taxid: 644223)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q6CJC4|ARO1_KLULA Pentafunctional AROM polypeptide OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ARO1 PE=3 SV=1

 Score =  139 bits (350), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/377 (31%), Positives = 199/377 (52%), Gaps = 29/377 (7%)

Query: 49   GADLVEIRLDGLKNFNPRENIK--TLIKES--PVPTLFTYRPIWEGGQYDGDENERVD-V 103
            G + VE+R+D L +F+     K  +L++ +   +P +FT R + +GG++  D+ + ++ +
Sbjct: 1090 GCEAVELRVDHLSSFSSDFVTKQISLLRAATKSLPIVFTVRTVSQGGKFQDDDYDLLESL 1149

Query: 104  LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNY--QYTPSVEDLSNLVAR 161
            L++A++   +YID+EL +      ++  KK    K+I S H++  ++     +  N   +
Sbjct: 1150 LKVALKNAVEYIDLELTLPNNILYNVLNKK-SNTKIIGSHHDFAAKFPWDDAEWENRYNQ 1208

Query: 162  IQASGADIVKFATTALDITDVARVFQI-TVHSQVPIIGLVMGERGLISRILCAKFGGFLT 220
              +   DIVKF  TA+   D   + +  + H+  P+I + M E G +SR+L       +T
Sbjct: 1209 ALSLDVDIVKFVGTAVSFDDNLALEKFRSTHTLKPLIAINMTETGKLSRVLNNILTP-VT 1267

Query: 221  FGTLENGIVSAPGQPTIKDLLDLYNFRQMG--PDTKVFGIIGKPVGHSKSPILYNEAFKS 278
               L +   +APGQ T+ ++  LY+  Q+G  P  K F +IG P+GHS+SPIL+N  ++ 
Sbjct: 1268 SKLLPSA--AAPGQLTLAEINQLYH--QIGGLPAKKFF-VIGSPIGHSRSPILHNTGYEL 1322

Query: 279  VGFNGVFVHLLVDDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNC 337
            +G    F     +DI    +   +  D  G + TIP K   +    E+   AK+IGAVN 
Sbjct: 1323 LGLPHHFDKFETEDIEVVKKELLTREDLGGLAVTIPLKLDIIDSMFELSEAAKTIGAVNT 1382

Query: 338  IIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALA 397
            +I    + K  G NTD++G    I++ L     VS GV S+++G   ++IGAGG  +A  
Sbjct: 1383 VIPLGKN-KFRGDNTDWLG----IKNSL-----VSNGVPSSVSGSAGLIIGAGGTSRAAI 1432

Query: 398  YGAKAKGARVV-IANRT 413
            Y  K  G   + + NRT
Sbjct: 1433 YALKQIGCDTIYMLNRT 1449

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q6FIV4|ARO1_CANGA Pentafunctional AROM polypeptide OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ARO1 PE=3 SV=1

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 191/385 (49%), Gaps = 34/385 (8%)

Query: 44   KANASGADLVEIRLDGLKNFNP---RENIKTLIKESP-VPTLFTYRPIWEGGQYDGDENE 99
            KA   G D VE+R+D L N +     + I  L   +  +P +FT R   +GG++  ++ E
Sbjct: 1085 KAITYGCDAVEVRVDHLSNMDEDFVSKQISILRASTDGLPIIFTVRTKKQGGKFPDEDYE 1144

Query: 100  RVDVLRL-AMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQ--YTPSVEDLS 156
             +  L + A+++G DYID+EL +       +   K    K+I S H++   Y     +  
Sbjct: 1145 TLQKLLITALKVGVDYIDLELTLPIGIQYKVLNMK-RNTKIIGSHHDFASAYPWDHSEWE 1203

Query: 157  NLVARIQASGADIVKFATTALDITD--VARVFQITVHSQVPIIGLVMGERGLISRILCAK 214
            N   +  A   DIVKF   A    D  +   F+ + H+  P+I + MG  G +SR+L   
Sbjct: 1204 NRYNQALAMDVDIVKFVGMAKSFEDNLMLERFRDS-HTTKPLIAINMGAHGRVSRVL--- 1259

Query: 215  FGGFLTFGTLEN-GIVSAPGQPTIKDLLDLYNFRQMGPDTKV-FGIIGKPVGHSKSPILY 272
                LT  T E+   V+APGQ T+ ++  +Y   +MG  TK  F ++G P+GHS+SP+L+
Sbjct: 1260 -NTILTPVTSEHLSEVAAPGQLTVAEINRIYT--EMGGITKKDFFVVGSPIGHSRSPVLH 1316

Query: 273  NEAFKSVGFNGVFVHLLV---DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329
            N  +  +G    F        +++ K      +N   G + TIP K   +K  DE+   A
Sbjct: 1317 NTGYSVLGLPHHFDKFETTSAEEVKKHLLDNKAN-LGGLAVTIPLKLDIIKYMDELTESA 1375

Query: 330  KSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA 389
            K IGAVN +I    + K  G NTD++        G+R  L VS GV  +++G   +V+GA
Sbjct: 1376 KVIGAVNTVIPL-GNSKFKGDNTDWL--------GIRNSL-VSNGVPESVSGLSGLVVGA 1425

Query: 390  GGAGKALAYGAKAKGA-RVVIANRT 413
            GG  +A  +     G  ++ I NRT
Sbjct: 1426 GGTSRAAIFALHKLGCQKIFIVNRT 1450

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C5FQ73|ARO1_ARTOC Pentafunctional AROM polypeptide OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) GN=MCYG_04845 PE=3 SV=1

 Score =  135 bits (339), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 185/388 (47%), Gaps = 35/388 (9%)

Query: 37   KMVVDMGKANASGADLVEIRLDGLKNFNPR----------ENIKTLIKESPVPTLFTYRP 86
            ++  D+ +A   G+D +E+R+D LK+ +            E +  L   +  P +FT R 
Sbjct: 1064 QLSADILRAATFGSDAIELRVDLLKDPSSTSGVPSVGYVAEQMSFLRSHASQPLIFTIRT 1123

Query: 87   IWEGGQYDGDE-NERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHN 145
              +GGQ+  D  ++ +++ +LA+ +G++++D+EL    +   ++   K    K+I S H+
Sbjct: 1124 KAQGGQFPDDAVDKALELYKLAIRMGSEFVDLELSFPNDLLHAVTEMK-GFSKIIASHHD 1182

Query: 146  YQYTPSVEDLSNLVARIQA-SGADIVKFATTALDITDVARVFQITVHSQ----VPIIGLV 200
                 S  + S +    +A    DI+K    A    D   + Q    ++    VPII + 
Sbjct: 1183 VNSQLSWSNGSWIQYYNKALQHGDIIKLIGVAKTFEDNMALQQFKSWAEKSYPVPIIAIN 1242

Query: 201  MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGP-DTKVFGII 259
            MG +G +SRIL  +F   ++   L     +APGQ + KD+        MG  D K F + 
Sbjct: 1243 MGNKGRLSRIL-NRFMTPVSHPALP--FKAAPGQVSAKDIRQALTL--MGELDAKKFALF 1297

Query: 260  GKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAV 319
            GKP+  S+SP L+N  F   GF   +  L  D      +   S+DF G S TIP KE  +
Sbjct: 1298 GKPISASRSPALHNALFTQAGFPHDYGLLETDKAENVEKFIRSDDFGGASVTIPLKEQIM 1357

Query: 320  KCCDEVDTVAKSIGAVNCIIRRQSDG---KLFGYNTDYVGAISAIEDGLRGRLNVSGGVS 376
               DE+   AK IGAVN I+     G   +L GYNTD+ G    ++D        +G + 
Sbjct: 1358 GLLDEISPEAKIIGAVNTIVPITVSGRPPRLIGYNTDWQGMARCLKD--------AGAIC 1409

Query: 377  SALAGKLFVVIGAGGAGKALAYGAKAKG 404
            S   G+  + IG+GG  +A  Y   + G
Sbjct: 1410 SN-NGESALTIGSGGTARAAIYSLHSMG 1436

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) (taxid: 554155)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C4JYG6|ARO1_UNCRE Pentafunctional AROM polypeptide OS=Uncinocarpus reesii (strain UAMH 1704) GN=UREG_07217 PE=3 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/383 (31%), Positives = 181/383 (47%), Gaps = 42/383 (10%)

Query: 49   GADLVEIRLDGLKNFNPR----------ENIKTLIKESPVPTLFTYRPIWEGGQYDGD-E 97
            G+D VE+R+D L + +            E I  L     VP +FT R   +GG++  D  
Sbjct: 1067 GSDAVELRVDLLVDPSSSSEMPSVDYVAEQISILRSRVSVPLVFTIRTKSQGGRFPDDAH 1126

Query: 98   NERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSN 157
            N  +D+ RLA+ +G++++D+E+        ++   K    K+I S H+     S  + S 
Sbjct: 1127 NAALDLYRLAIRMGSEFVDLEVTFPEYVLRAVTEMK-GVSKIIASHHDVANRLSWRNGSW 1185

Query: 158  LVARIQA-SGADIVKFATTALDITD--VARVFQITVHS--QVPIIGLVMGERGLISRILC 212
                 +A    DI+K    A  + D    R F+I       +P+I + MGERG +SRIL 
Sbjct: 1186 TQFYNKALQYGDIIKLVGIASQLDDNIALREFKIWAKKAHDIPVIAINMGERGRLSRIL- 1244

Query: 213  AKFGGFLT-FGTLENGIVSAPGQPTIKDLLDLYNFRQMGP-DTKVFGIIGKPVGHSKSPI 270
                GF+T     +    +APGQ + K++ +  +   MG  ++K F I+GKP+  S+SP 
Sbjct: 1245 ---NGFMTPVSHPKLPFKAAPGQLSAKEIREGLSL--MGEIESKKFAIVGKPISASRSPA 1299

Query: 271  LYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAK 330
            L+N  F  VG   V+  L  DD+        + DF G S TIP K   +   DE+   AK
Sbjct: 1300 LHNALFADVGLPHVYGRLETDDVQNVKDLIHAPDFGGASITIPLKLDIMPLLDEIAPEAK 1359

Query: 331  SIGAVNCII---RRQSDGK----LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKL 383
             IGAVN I+   R   D K    L GYNTD+ G +  +  G        G VS + +   
Sbjct: 1360 VIGAVNTIVPAPREPGDVKKGPRLIGYNTDWQGMVQCLRHG--------GAVSPSTSNDP 1411

Query: 384  F--VVIGAGGAGKALAYGAKAKG 404
               +VIG GG  +A  +   + G
Sbjct: 1412 APGLVIGGGGTARAAIHALHSMG 1434

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Uncinocarpus reesii (strain UAMH 1704) (taxid: 336963)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|A4RD09|ARO1_MAGO7 Pentafunctional AROM polypeptide OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MGG_01128 PE=3 SV=2

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 180/370 (48%), Gaps = 28/370 (7%)

Query: 49   GADLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFTYRPIWEGGQY-DGDENERVDVL 104
            G+D VE+R+D L++ +P      +  L     +P +FT R + +GG++ D D    + + 
Sbjct: 1089 GSDAVELRVDLLQDHSPEFVVRQVALLRSLCKMPIIFTVRTVSQGGRFPDADHAGALALY 1148

Query: 105  RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA 164
            R+A+ +G +Y+DVE+ +  +  +++   K     +I S H+ + T S  + + +    +A
Sbjct: 1149 RVALRMGVEYVDVEMTMPEDVIETVTKAK-GYTSIIASHHDPKGTLSWRNGAWMQYYNKA 1207

Query: 165  -SGADIVKFATTALDITD-----VARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGF 218
                D++K         D       +   +  H   PII L MGE+G +SR+L     GF
Sbjct: 1208 LHYGDVIKLVGWCRTDEDNFSLLTFKTRMLAAHESTPIIALNMGEQGKLSRVL----NGF 1263

Query: 219  LTFGT-LENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFK 277
            +T  T       +APGQ T  ++    +     P  K F + GKP+  S+SPIL+N  F+
Sbjct: 1264 MTPVTHAALPAAAAPGQLTAAEIRQALSLLSKIPKRK-FYLFGKPISKSRSPILHNTLFQ 1322

Query: 278  SVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNC 337
              G    +  L  D +A+   T  ++DF G S TIP K   +   DE+   AK+IGAVN 
Sbjct: 1323 QTGLPHTYSRLETDKVAEVETTIRASDFGGASVTIPLKLDIMPMLDEITDAAKTIGAVNT 1382

Query: 338  IIR---RQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGK 394
            II    +    +L G NTD+ G + ++         V+G  +   +G   VV+G+GG  +
Sbjct: 1383 IIPVPVQAGKQRLRGDNTDWCGMVHSLR-----MAGVTGKRACPASG---VVVGSGGTTR 1434

Query: 395  ALAYGAKAKG 404
            A  +   + G
Sbjct: 1435 AAIFALHSLG 1444

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q9P7R0|ARO1_SCHPO Pentafunctional AROM polypeptide OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=aro1 PE=3 SV=1

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 191/393 (48%), Gaps = 42/393 (10%)

Query: 49   GADLVEIRLDGLKNFNPR------------ENIKTLIKESPVPTLFTYRPIWEGGQYDGD 96
            G D +E+R+D LK+  P+            E I  L   + +P +FT R I +GG +  D
Sbjct: 1077 GCDAIEVRVDYLKD--PKSSNGISSLDFVAEQISLLRCSTTLPIIFTIRTISQGGLFPND 1134

Query: 97   ENERVDVLRL-AMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDL 155
            + E    L L AM  G D++DVEL  + E  + +   K    K+I+S H+   T S    
Sbjct: 1135 KEEEAKELMLSAMRYGCDFVDVELGWSSETINILYQHK-GYTKLIMSWHDLSGTWSWARP 1193

Query: 156  SNLVARIQ--ASGADIVKFATTALDITDVARVFQ----ITVHSQVPIIGLVMGERGLISR 209
               + +++  +S AD++K    A ++ D   + +    IT    +P+I   MG  G +SR
Sbjct: 1194 HEWMQKVELASSYADVIKLVGMANNLNDNLELEEFRTRITNSMDIPLILFNMGRFGQLSR 1253

Query: 210  ILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF-RQMGPDTKVFGIIGKPVGHSKS 268
            IL  KF   +T   L +   +APGQ T+K L +      ++ P+   F + GKP+ HS+S
Sbjct: 1254 IL-NKFMTPVTHPLLPSK--AAPGQLTVKQLNEARVLIGEILPEK--FFLFGKPIKHSRS 1308

Query: 269  PILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTV 328
            PIL++ A++ +G    +     D + +  +  +  DF G + TIP+K + +K  DE+   
Sbjct: 1309 PILHSTAYELLGLPHTYEAFETDTVDEVQKVLNLPDFGGANVTIPYKLSVMKFMDELSDE 1368

Query: 329  AKSIGAVNCIIRRQSDGKLF--GYNTDYVGAISAIEDGLRG-RLNVSGGVSSALAGKLFV 385
            A+  GAVN II  +   KL   G NTD+ G      + L G  L  + G          +
Sbjct: 1369 ARFFGAVNTIIPIRIGDKLVLRGDNTDWRGIYDTFANALDGVSLRDTNG----------L 1418

Query: 386  VIGAGGAGKALAYGAKAKG-ARVVIANRTYGES 417
            VIGAGG  +A  Y     G +R+ + NRT   S
Sbjct: 1419 VIGAGGTSRAAIYSLHRLGVSRIYLLNRTLANS 1451

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	493
255551621	539	shikimate dehydrogenase, putative [Ricin	0.817	0.747	0.824	0.0
224107417	538	dehydroquinate dehydratase/ shikimate de	0.809	0.741	0.827	0.0
359477446	522	PREDICTED: bifunctional 3-dehydroquinate	0.815	0.770	0.807	0.0
58047529	508	3-dehydroquinate dehydratase/shikimate 5	0.793	0.769	0.818	1e-179
356495945	527	PREDICTED: bifunctional 3-dehydroquinate	0.837	0.783	0.760	1e-175
76782194	536	putative 3-dehydroquinate dehydratase/sh	0.827	0.761	0.764	1e-175
297736925	495	unnamed protein product [Vitis vinifera]	0.770	0.767	0.815	1e-174
281193024	526	dehydroquinate dehydratase [Solanum tube	0.823	0.771	0.754	1e-171
397911050	377	shikimate dehydrogenase, partial [Gunner	0.762	0.997	0.805	1e-171
449503035	542	PREDICTED: bifunctional 3-dehydroquinate	0.801	0.728	0.775	1e-170

>gi|255551621|ref|XP_002516856.1| shikimate dehydrogenase, putative [Ricinus communis] gi|223543944|gb|EEF45470.1| shikimate dehydrogenase, putative [Ricinus communis]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/404 (82%), Positives = 365/404 (90%), Gaps = 1/404 (0%)

Query: 11  GSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIK 70
           GS+ V GG+RKNPTLIC PIM +SVDKM++++ KA  +GADLVEIRLD LK FN  ++IK
Sbjct: 20  GSRGV-GGLRKNPTLICAPIMADSVDKMLINLVKAKENGADLVEIRLDSLKTFNASDDIK 78

Query: 71  TLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIR 130
           TLI  SP+PTLFTYRP WEGG+YDGDENER+D LRLAMELGADYIDVEL+VA +FNDSIR
Sbjct: 79  TLITRSPLPTLFTYRPKWEGGEYDGDENERLDALRLAMELGADYIDVELKVAHKFNDSIR 138

Query: 131 GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITV 190
           G KP KCKVIVSSHNY  TPSVEDL NLVA IQA+GADIVK ATTALDITDVAR+FQITV
Sbjct: 139 GNKPAKCKVIVSSHNYHNTPSVEDLGNLVADIQAAGADIVKIATTALDITDVARIFQITV 198

Query: 191 HSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMG 250
           HSQVPIIG+VMGERGLISRILCAKFGG+LTFGTLE+GIVSAPGQP IKDLLDLYNFRQ+G
Sbjct: 199 HSQVPIIGIVMGERGLISRILCAKFGGYLTFGTLESGIVSAPGQPMIKDLLDLYNFRQIG 258

Query: 251 PDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSC 310
           PDTKV+GIIGKPVGHSKSP+LYNEAFKSVGFNGV+VHLLVDDIA F QT+SS DFAGFSC
Sbjct: 259 PDTKVYGIIGKPVGHSKSPVLYNEAFKSVGFNGVYVHLLVDDIASFLQTFSSTDFAGFSC 318

Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
           TIPHKEAAV CCD +D+VA+SIGAVNCIIRRQ DGKLFGYNTDY GAI+AIE+GLR   N
Sbjct: 319 TIPHKEAAVDCCDGIDSVARSIGAVNCIIRRQRDGKLFGYNTDYDGAITAIEEGLRVSQN 378

Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414
           +SG   S LAGKLFVVIGAGGAGKALAYGAK KGA+VVIANRTY
Sbjct: 379 ISGAADSPLAGKLFVVIGAGGAGKALAYGAKQKGAKVVIANRTY 422

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107417|ref|XP_002314474.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa] gi|222863514|gb|EEF00645.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/399 (82%), Positives = 361/399 (90%)

Query: 16  SGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE 75
           SGG+R+NPTLIC PIM +SVDKM + M +A + GADLVEIRLD LK+FNP  +IKTLI  
Sbjct: 23  SGGVRRNPTLICTPIMADSVDKMAILMAEAKSVGADLVEIRLDSLKDFNPNSDIKTLILH 82

Query: 76  SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPE 135
           SP+PTLFTYRP+WEGGQY+GDE  R+D LRLAMELGADYIDVEL+VA EFN+ +RG KP 
Sbjct: 83  SPLPTLFTYRPMWEGGQYNGDEKPRLDALRLAMELGADYIDVELKVAHEFNELLRGNKPG 142

Query: 136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVP 195
           KCK+IVSSHNY+ TPSVE+L NLVARIQA+GADIVK ATTALDI+DVAR+FQITVHSQVP
Sbjct: 143 KCKLIVSSHNYENTPSVEELGNLVARIQAAGADIVKIATTALDISDVARIFQITVHSQVP 202

Query: 196 IIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKV 255
           IIGLVMGERGLISRILCAKFGG+LTFGTLE+G+VSAPGQPTIKDLLDLYNFR +GPDTKV
Sbjct: 203 IIGLVMGERGLISRILCAKFGGYLTFGTLESGVVSAPGQPTIKDLLDLYNFRLIGPDTKV 262

Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHK 315
           FGIIGKPVGHSKSP+L+NEAFKSVG NGV+VHLLVDDIA+F QTYSS DFAGFSCTIPHK
Sbjct: 263 FGIIGKPVGHSKSPVLFNEAFKSVGINGVYVHLLVDDIARFLQTYSSTDFAGFSCTIPHK 322

Query: 316 EAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGV 375
           E A KCCDEV  VAKSIGAVNCIIRRQ+DGKLFGYNTDYVGAISAIE+GLR   NVS  V
Sbjct: 323 EDAAKCCDEVHPVAKSIGAVNCIIRRQNDGKLFGYNTDYVGAISAIEEGLRASQNVSNTV 382

Query: 376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414
            S LAGKLFVVIGAGGAGKALAYGAK KGARVVIANRTY
Sbjct: 383 GSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY 421

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477446|ref|XP_002277395.2| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Vitis vinifera]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/405 (80%), Positives = 358/405 (88%), Gaps = 3/405 (0%)

Query: 16  SGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE 75
           SGGM KN TLICVPIMGE+++KMVVDM KA  SGADLVE+RLD LK FNPR++++ LI++
Sbjct: 3   SGGMSKNSTLICVPIMGETIEKMVVDMSKAKTSGADLVEVRLDTLKRFNPRQDLEVLIRK 62

Query: 76  SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPE 135
            P+PTLFTYRP WEGGQY+GDEN R D LRLAMELGADY+D+EL+VA EF +SI G+KPE
Sbjct: 63  CPLPTLFTYRPKWEGGQYEGDENSRRDALRLAMELGADYVDIELKVAHEFINSIHGRKPE 122

Query: 136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV- 194
           K KVIVSSHNYQ TPSVEDL NLV  IQA+GADIVK ATTAL+ITDVAR+FQITVHSQV 
Sbjct: 123 KFKVIVSSHNYQNTPSVEDLGNLVVSIQATGADIVKIATTALEITDVARIFQITVHSQVS 182

Query: 195 --PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPD 252
             P+IGLVMGERGLISRILC KF G+LTFG+LE GIVSAPGQPTIKDLL+LYNFRQ+GPD
Sbjct: 183 SVPVIGLVMGERGLISRILCPKFSGYLTFGSLEPGIVSAPGQPTIKDLLNLYNFRQLGPD 242

Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTI 312
           TKVFG+IGKPV HSKSP LYNEAFKSVGFNGV+VHLLVDDIAKFF TYS+ DFAGFSCTI
Sbjct: 243 TKVFGVIGKPVSHSKSPHLYNEAFKSVGFNGVYVHLLVDDIAKFFHTYSAADFAGFSCTI 302

Query: 313 PHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVS 372
           PHKEAA+KCCDEV  VAKSIGAVNCIIRR SDGKLFGYNTDYVGAISAIEDGLR    +S
Sbjct: 303 PHKEAALKCCDEVSPVAKSIGAVNCIIRRPSDGKLFGYNTDYVGAISAIEDGLRDLHKIS 362

Query: 373 GGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGES 417
               S LAGKLFVVIGAGGAGKALAYGAK KGARVVIANRTY  +
Sbjct: 363 STSGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYARA 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58047529|gb|AAW65140.1| 3-dehydroquinate dehydratase/shikimate 5-dehydrogenase [Juglans regia]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 320/391 (81%), Positives = 345/391 (88%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFT 83
           TL+C PIM ESVDKMV++M KA    ADLVEIRLD LK+FNP  ++KT+IK SP+PTLFT
Sbjct: 1   TLVCAPIMAESVDKMVINMNKAKQGDADLVEIRLDSLKSFNPSNDLKTIIKASPLPTLFT 60

Query: 84  YRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS 143
           YRP WEGGQYDGDE +R+D LRLAME GADYIDVELQVA EFNDSI G+KPE  KVIVSS
Sbjct: 61  YRPKWEGGQYDGDEKKRLDALRLAMEFGADYIDVELQVACEFNDSIYGRKPENSKVIVSS 120

Query: 144 HNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGE 203
           HNYQ TPS EDL NLVARIQA+GADIVK ATTAL+I DVAR+FQITVHSQVPIIG+VMGE
Sbjct: 121 HNYQDTPSAEDLGNLVARIQATGADIVKIATTALEIADVARIFQITVHSQVPIIGIVMGE 180

Query: 204 RGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPV 263
           RG +SRILC KFGGFLTFGT+E+GIVSAPGQPT+KDLL LYN R++GPDTKVFGIIGKPV
Sbjct: 181 RGFMSRILCPKFGGFLTFGTIESGIVSAPGQPTMKDLLHLYNLRRIGPDTKVFGIIGKPV 240

Query: 264 GHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCD 323
            HSKSPILYNEAFKSV FNGV++ LLVDDIA F QTYSS DFAGFSCTIPHKEAA+KCCD
Sbjct: 241 HHSKSPILYNEAFKSVCFNGVYIPLLVDDIANFLQTYSSTDFAGFSCTIPHKEAALKCCD 300

Query: 324 EVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKL 383
           EVD VAKSIGAVNCIIRR +DGKL GYNTDYVGAISAIEDGLRG  N S    S LAGKL
Sbjct: 301 EVDPVAKSIGAVNCIIRRPTDGKLVGYNTDYVGAISAIEDGLRGSHNSSNTADSPLAGKL 360

Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTY 414
           FVVIGAGGAGKALAYGAK KGARVVIANRTY
Sbjct: 361 FVVIGAGGAGKALAYGAKEKGARVVIANRTY 391

Source: Juglans regia

Species: Juglans regia

Genus: Juglans

Family: Juglandaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495945|ref|XP_003516831.1| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Glycine max]

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 317/417 (76%), Positives = 352/417 (84%), Gaps = 4/417 (0%)

Query: 1   MESPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGL 60
           M+SPN L    S   + G RKN TLICVPIMGESV+KM +D+ KA A GADLVEIRLD L
Sbjct: 1   MDSPNAL----STAPAAGSRKNATLICVPIMGESVEKMEIDVDKAKAGGADLVEIRLDSL 56

Query: 61  KNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQ 120
           K F+P  ++   I+   +P LFTYRP WEGG YDGDEN+R+D LRLAMELGADYID+ELQ
Sbjct: 57  KTFDPYRDLNAFIQHRSLPLLFTYRPKWEGGMYDGDENKRLDALRLAMELGADYIDIELQ 116

Query: 121 VAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDIT 180
           VA EF DSIRGK   K KVIVSSHNYQ TPS+EDL NLVARIQA+GADIVK ATTALDIT
Sbjct: 117 VAHEFYDSIRGKTFNKTKVIVSSHNYQLTPSIEDLGNLVARIQATGADIVKIATTALDIT 176

Query: 181 DVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
           DVAR+FQI VHSQVP IGLVMG+RGLISRIL AKFGG+LTFGTLE+G+VSAPGQPT+KDL
Sbjct: 177 DVARMFQIMVHSQVPFIGLVMGDRGLISRILSAKFGGYLTFGTLESGVVSAPGQPTLKDL 236

Query: 241 LDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTY 300
           L LYN RQ+ PDTKVFGIIGKPVGHSKSPIL+NE FKS+G NGV++ LLVDD+A F +TY
Sbjct: 237 LYLYNLRQLAPDTKVFGIIGKPVGHSKSPILFNEVFKSIGLNGVYLFLLVDDLANFLRTY 296

Query: 301 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISA 360
           SS DF GFS TIPHKE A+KCCDEVD VAKSIGAVNCI+RR +DGKL GYNTDYVGAI+A
Sbjct: 297 SSTDFVGFSVTIPHKETALKCCDEVDPVAKSIGAVNCIVRRPTDGKLIGYNTDYVGAITA 356

Query: 361 IEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGES 417
           IE+GLRG+ N S    S LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  +
Sbjct: 357 IENGLRGKHNGSSTTISPLAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDHA 413

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76782194|gb|ABA54867.1| putative 3-dehydroquinate dehydratase/shikimate dehydrogenase [Fagus sylvatica]

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 325/425 (76%), Positives = 360/425 (84%), Gaps = 17/425 (4%)

Query: 1   MESPNLLVASGS---KLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRL 57
           M+S N+L+AS S   ++  G +RKNPTL+C PIM ESVDKMV++M KA   GADLVEIRL
Sbjct: 1   MDSTNVLLASSSASLQIGGGEIRKNPTLVCAPIMAESVDKMVINMDKAKQGGADLVEIRL 60

Query: 58  DGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV 117
           D LK+FNP  ++KTLIKE P+PTLFTYRP WEGGQYDGDE +R+D LRLAME GADYIDV
Sbjct: 61  DSLKSFNPNGDLKTLIKECPLPTLFTYRPKWEGGQYDGDEKKRLDALRLAMEFGADYIDV 120

Query: 118 ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL 177
           ELQVA+EFN+SI GKKPE  KVIVSSHNYQ TPSVEDL NLVARIQA+GADIVKFATTAL
Sbjct: 121 ELQVAQEFNESIYGKKPEMFKVIVSSHNYQNTPSVEDLGNLVARIQATGADIVKFATTAL 180

Query: 178 DITDVARVFQITVHSQ---VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQ 234
           +ITDVAR+FQI VHSQ   VPII +VMGERG ISRILC KFGGFL+FGT+E+GIVSAPGQ
Sbjct: 181 EITDVARIFQIIVHSQVSSVPIIAIVMGERGFISRILCPKFGGFLSFGTIESGIVSAPGQ 240

Query: 235 PTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIA 294
           P +KDLL LYNFRQ+GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGV+V      ++
Sbjct: 241 PIMKDLLHLYNFRQIGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVYV------LS 294

Query: 295 KFFQTYSSND-----FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFG 349
            +     S D     FAGFS TIPHKEAA+KCCDEVD VAKSIGAVNCI+RR +DGK+FG
Sbjct: 295 WWMTCKISPDLLILRFAGFSITIPHKEAALKCCDEVDPVAKSIGAVNCIVRRSTDGKIFG 354

Query: 350 YNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
           YNTDYVGAISAIEDGLRG  N+S    S LAGKLFVVIGAGGAGKALAYGAK KGARVVI
Sbjct: 355 YNTDYVGAISAIEDGLRGSKNISYAADSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVI 414

Query: 410 ANRTY 414
           ANRTY
Sbjct: 415 ANRTY 419

Source: Fagus sylvatica

Species: Fagus sylvatica

Genus: Fagus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736925|emb|CBI26126.3| unnamed protein product [Vitis vinifera]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 310/380 (81%), Positives = 338/380 (88%)

Query: 38  MVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDE 97
           MVVDM KA  SGADLVE+RLD LK FNPR++++ LI++ P+PTLFTYRP WEGGQY+GDE
Sbjct: 1   MVVDMSKAKTSGADLVEVRLDTLKRFNPRQDLEVLIRKCPLPTLFTYRPKWEGGQYEGDE 60

Query: 98  NERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSN 157
           N R D LRLAMELGADY+D+EL+VA EF +SI G+KPEK KVIVSSHNYQ TPSVEDL N
Sbjct: 61  NSRRDALRLAMELGADYVDIELKVAHEFINSIHGRKPEKFKVIVSSHNYQNTPSVEDLGN 120

Query: 158 LVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGG 217
           LV  IQA+GADIVK ATTAL+ITDVAR+FQITVHSQVP+IGLVMGERGLISRILC KF G
Sbjct: 121 LVVSIQATGADIVKIATTALEITDVARIFQITVHSQVPVIGLVMGERGLISRILCPKFSG 180

Query: 218 FLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFK 277
           +LTFG+LE GIVSAPGQPTIKDLL+LYNFRQ+GPDTKVFG+IGKPV HSKSP LYNEAFK
Sbjct: 181 YLTFGSLEPGIVSAPGQPTIKDLLNLYNFRQLGPDTKVFGVIGKPVSHSKSPHLYNEAFK 240

Query: 278 SVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNC 337
           SVGFNGV+VHLLVDDIAKFF TYS+ DFAGFSCTIPHKEAA+KCCDEV  VAKSIGAVNC
Sbjct: 241 SVGFNGVYVHLLVDDIAKFFHTYSAADFAGFSCTIPHKEAALKCCDEVSPVAKSIGAVNC 300

Query: 338 IIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALA 397
           IIRR SDGKLFGYNTDYVGAISAIEDGLR    +S    S LAGKLFVVIGAGGAGKALA
Sbjct: 301 IIRRPSDGKLFGYNTDYVGAISAIEDGLRDLHKISSTSGSPLAGKLFVVIGAGGAGKALA 360

Query: 398 YGAKAKGARVVIANRTYGES 417
           YGAK KGARVVIANRTY  +
Sbjct: 361 YGAKEKGARVVIANRTYARA 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|281193024|gb|ADA57640.1| dehydroquinate dehydratase [Solanum tuberosum]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 311/412 (75%), Positives = 354/412 (85%), Gaps = 6/412 (1%)

Query: 5   NLLVASGSKLVSG-GMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF 63
            L+V SG K + G  MRKN TLIC PIM +SVD+M++ M KA  SGADLV +R+D LK+F
Sbjct: 2   ELVVDSGVKKMEGEAMRKNQTLICAPIMADSVDQMLILMQKAKTSGADLVGVRVDSLKSF 61

Query: 64  NPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR 123
           NPR +I  LIK+ P+PTLFTYRP WEGGQY GDE  R+D LRLAMELGADYIDVEL+   
Sbjct: 62  NPRPDIDALIKQCPLPTLFTYRPTWEGGQYAGDEMSRLDALRLAMELGADYIDVELKAID 121

Query: 124 EFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVA 183
           EFN+++ G K  KCK+IVSSHNY+ TPS EDL NLVARIQASGADIVKFATTA DITDVA
Sbjct: 122 EFNNALHGNKSAKCKLIVSSHNYESTPSAEDLGNLVARIQASGADIVKFATTAQDITDVA 181

Query: 184 RVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDL 243
           RVFQITVHSQVPII +VMGE+GL+SRILC KFGG+LTFGTLE G VSAPGQPT++DLL+L
Sbjct: 182 RVFQITVHSQVPIIAMVMGEKGLMSRILCPKFGGYLTFGTLEMGKVSAPGQPTVEDLLNL 241

Query: 244 YNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSN 303
           YNFRQ+GPDTK+FGIIGKPV HSK P+LYNE+F+SVGFNGVF+HLLVDDIA FF+TYSS 
Sbjct: 242 YNFRQLGPDTKIFGIIGKPVSHSKPPLLYNESFRSVGFNGVFMHLLVDDIANFFRTYSSL 301

Query: 304 DFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED 363
           DFAGFSCTIPHKEAA+ CC E+D  AK+IGAVNCIIRR  DGKLFG NTDY+GAISAIE+
Sbjct: 302 DFAGFSCTIPHKEAALDCCAEIDPTAKAIGAVNCIIRR-PDGKLFGCNTDYIGAISAIEE 360

Query: 364 GLRG-RLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414
           GL+G + ++SG   S LAGKLFVVIGAGGAGKA+AYGAK KGARVVIANRTY
Sbjct: 361 GLQGSQPSISG---SPLAGKLFVVIGAGGAGKAIAYGAKEKGARVVIANRTY 409

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397911050|gb|AFO68801.1| shikimate dehydrogenase, partial [Gunnera manicata]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 311/386 (80%), Positives = 342/386 (88%), Gaps = 10/386 (2%)

Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYR 85
           ICVP+  ESVD+M++ M KA  SG DLVE+RLD LK+FNP ++++ LIKE P+PT+FT+R
Sbjct: 2   ICVPLTAESVDEMLIGMRKAKESGVDLVEVRLDFLKSFNPPQDLEFLIKECPLPTIFTFR 61

Query: 86  PIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHN 145
           P WEGGQYDG+EN+R+D LRLAMELGADYIDVELQVAREFN+SI  KKPEK KVIVSSHN
Sbjct: 62  PKWEGGQYDGEENKRLDALRLAMELGADYIDVELQVAREFNNSISAKKPEKFKVIVSSHN 121

Query: 146 YQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERG 205
           Y+ TPSVEDL NLVA+IQA+GADIVK ATTALDITDVAR+FQITVHSQVPIIGLVMGERG
Sbjct: 122 YENTPSVEDLGNLVAKIQATGADIVKIATTALDITDVARIFQITVHSQVPIIGLVMGERG 181

Query: 206 LISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGH 265
           LISR+LC KFGG+LTF TLE G VSAPGQPTI DLL++YNFR +GPDTKVFGIIGKPVGH
Sbjct: 182 LISRLLCPKFGGYLTFATLEAGKVSAPGQPTINDLLNVYNFRLIGPDTKVFGIIGKPVGH 241

Query: 266 SKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEV 325
           SKSP+LYN AFKS+GFNGV+VHLLVDDIAKF QTYSS DF GFS TIPHKE AVKCC+EV
Sbjct: 242 SKSPLLYNSAFKSIGFNGVYVHLLVDDIAKFLQTYSSTDFVGFSVTIPHKENAVKCCNEV 301

Query: 326 DTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFV 385
           D VAKSI AVNCII+RQSDGKLFGYNTDYVGAISAIEDGLR          S LAGKLFV
Sbjct: 302 DPVAKSIEAVNCIIKRQSDGKLFGYNTDYVGAISAIEDGLR----------SPLAGKLFV 351

Query: 386 VIGAGGAGKALAYGAKAKGARVVIAN 411
           VIGAGGAGKALAYGAKAKGARVVIAN
Sbjct: 352 VIGAGGAGKALAYGAKAKGARVVIAN 377

Source: Gunnera manicata

Species: Gunnera manicata

Genus: Gunnera

Family: Gunneraceae

Order: Gunnerales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503035|ref|XP_004161812.1| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Cucumis sativus]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 307/396 (77%), Positives = 342/396 (86%), Gaps = 1/396 (0%)

Query: 19  MRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPV 78
           +++N +L+CVPIM +S D M+ D  KA  SGADLVEIRLD LK FN + ++ TL+KE P+
Sbjct: 28  IKRNSSLVCVPIMADSADLMIADARKAKTSGADLVEIRLDSLKIFNQQTDLGTLVKECPL 87

Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCK 138
           PTLFTYRP WEGGQYDGDENER++VLRL MELGADY+DVELQVAREF DSIRGKKPEKCK
Sbjct: 88  PTLFTYRPKWEGGQYDGDENERLEVLRLVMELGADYVDVELQVAREFIDSIRGKKPEKCK 147

Query: 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIG 198
           VIVSSHNY+ TPS++DL  LVARIQ SGADIVK ATTA DITDV+R+F I VHSQVP+IG
Sbjct: 148 VIVSSHNYEETPSLDDLGKLVARIQESGADIVKIATTARDITDVSRIFHIIVHSQVPLIG 207

Query: 199 LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGI 258
           LVMGERGLISRILCAKFGG+LTF TLE GIVSAPGQPTI+DLL LYNFRQ+GPDTKV+GI
Sbjct: 208 LVMGERGLISRILCAKFGGYLTFATLEAGIVSAPGQPTIQDLLTLYNFRQIGPDTKVYGI 267

Query: 259 IGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAA 318
           IGKPVGHSKSP+L+NEAFKS+ FNGV+VH LVDDI  F QTYSS DFAGFSCTIPHKEAA
Sbjct: 268 IGKPVGHSKSPMLFNEAFKSIRFNGVYVHYLVDDIVNFLQTYSSLDFAGFSCTIPHKEAA 327

Query: 319 VKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSA 378
            K CDEVD VAKSIGAVNCI+RR  DGK  GYNTDYVGAISAIE+ L+G    S    S 
Sbjct: 328 AKFCDEVDPVAKSIGAVNCIVRRH-DGKFCGYNTDYVGAISAIEEKLQGDYTGSPLSGSP 386

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414
           L G+LFVVIGAGGAGKALAYGAK KGA+V+IANRTY
Sbjct: 387 LFGRLFVVIGAGGAGKALAYGAKEKGAKVMIANRTY 422

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	493
TAIR|locus:2081036	603	MEE32 "MATERNAL EFFECT EMBRYO	0.847	0.693	0.695	4.7e-151
TIGR_CMR|CBU_2075	233	CBU_2075 "3-dehydroquinate deh	0.436	0.922	0.32	7.5e-28
SGD|S000002534	1588	ARO1 "Pentafunctional arom pro	0.661	0.205	0.292	2.2e-27
POMBASE|SPAC1834.02	1573	aro1 "pentafunctional aromatic	0.634	0.198	0.315	3.8e-25
ASPGD|ASPL0000055969	1583	aromA [Emericella nidulans (ta	0.630	0.196	0.303	4.2e-21
CGD|CAL0004346	1551	ARO1 [Candida albicans (taxid:	0.718	0.228	0.276	6.8e-21
TIGR_CMR|DET_0466	222	DET_0466 "3-dehydroquinate deh	0.423	0.941	0.325	1.6e-20
TIGR_CMR|BA_4561	308	BA_4561 "shikimate 5-dehydroge	0.217	0.347	0.378	4.5e-17
UNIPROTKB|P05194	252	aroD "AroD" [Escherichia coli	0.432	0.845	0.277	3e-16
TIGR_CMR|CHY_0623	280	CHY_0623 "shikimate 5-dehydrog	0.257	0.453	0.372	6.4e-16

TAIR|locus:2081036 MEE32 "MATERNAL EFFECT EMBRYO ARREST 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 1474 (523.9 bits), Expect = 4.7e-151, P = 4.7e-151
 Identities = 294/423 (69%), Positives = 341/423 (80%)

Query:     1 MESPNLLVASGS---KLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRL 57
             ME  N+ VAS S   ++ S  + KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRL
Sbjct:    68 MEPSNVYVASNSTEMEIGSHDIVKNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRL 127

Query:    58 DGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV 117
             D LK+FNP E++KT+IK+SP+PTLFTYRP WEGGQY+GDENER DVLRLAMELGADYIDV
Sbjct:   128 DWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDV 187

Query:   118 ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL 177
             ELQVA EF  SI GKKP K KVIVSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+
Sbjct:   188 ELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAV 247

Query:   178 DITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTI 237
             DI DVAR+F IT  +QVP IGLVMGERGL+SRILC+KFGG+LTFGTL++  VSAPGQPTI
Sbjct:   248 DIADVARMFHITSKAQVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTI 307

Query:   238 KDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFF 297
             KDLLDLYNFR++GPDTKV+GIIGKPV HSKSPI++N+AFKSV FNGV+VHLLVD++  F 
Sbjct:   308 KDLLDLYNFRRIGPDTKVYGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFL 367

Query:   298 QTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGA 357
             Q YSS+DFAGFSCTIPHKEAA++CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+
Sbjct:   368 QAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGS 427

Query:   358 ISAIEDGLRGRLNVSG--GVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYG 415
             ISAIEDGLR   + S     SS LA K  VVI                  +VVIANRTY 
Sbjct:   428 ISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYE 487

Query:   416 ESL 418
              +L
Sbjct:   488 RAL 490

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA;IDA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019632 "shikimate metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

TIGR_CMR|CBU_2075 CBU_2075 "3-dehydroquinate dehydratase, type I" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 313 (115.2 bits), Expect = 7.5e-28, P = 7.5e-28
 Identities = 72/225 (32%), Positives = 129/225 (57%)

Query:    22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTL 81
             N   ICV ++G+++++ +  + +A  +  D VE+R+D L+  NP   ++ +   +    +
Sbjct:     3 NTPRICVVVIGKTLEEFLSQL-EAAQTAVDFVELRIDYLEQINPNW-VRIIKNHTHKKAI 60

Query:    82 FTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIV 141
                R   +GG++ G    + ++L+   +LG DY+D++L VA +   SI  KK    K+I+
Sbjct:    61 LCCRARADGGKFLGTPEAQQEILQAGNDLGFDYLDIDLPVANKI--SIHEKK---AKIII 115

Query:   142 SSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ--VPIIGL 199
             S HN+ +TP + +L+ L+  ++    D+ KFAT +    DV  +F++ ++ +    +I L
Sbjct:   116 SYHNFLHTPPITELNFLLENMRLFNPDVFKFATKSEQYEDVKTLFKLLINKKNNENMIVL 175

Query:   200 VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY 244
              MGE+G I R+L    GG+LTF ++ NG +SAPGQ   K + D Y
Sbjct:   176 GMGEQGKIIRLLSPLLGGYLTFSSI-NGAISAPGQIDFKTMQDFY 219

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=ISS

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=ISS

SGD|S000002534 ARO1 "Pentafunctional arom protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 334 (122.6 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 101/345 (29%), Positives = 176/345 (51%)

Query:    49 GADLVEIRLDGLKNFNP---RENIKTLIKESP-VPTLFTYRPIWEGGQYDGDENERV-DV 103
             G + VE+R+D L N++     + +  L K +  +P +FT R + +GG +  +E + + ++
Sbjct:  1099 GCEAVEVRVDHLANYSADFVSKQLSILRKATDSIPIIFTVRTMKQGGNFPDEEFKTLREL 1158

Query:   104 LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLS--NLVAR 161
               +A++ G +++D+EL +  +    +  K+    K+I S H++Q   S +D    N   +
Sbjct:  1159 YDIALKNGVEFLDLELTLPTDIQYEVINKRGNT-KIIGSHHDFQGLYSWDDAEWENRFNQ 1217

Query:   162 IQASGADIVKFATTALDITDVARV--FQITVHSQVPIIGLVMGERGLISRILCAKFGGFL 219
                   D+VKF  TA++  D  R+  F+ T H   P+I + M  +G ISR+L       +
Sbjct:  1218 ALTLDVDVVKFVGTAVNFEDNLRLEHFRDT-HKNKPLIAVNMTSKGSISRVLNNVLTP-V 1275

Query:   220 TFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSV 279
             T   L N   +APGQ T+  +  +Y     G + K   ++GKP+GHS+SPIL+N  ++ +
Sbjct:  1276 TSDLLPNS--AAPGQLTVAQINKMYT-SMGGIEPKELFVVGKPIGHSRSPILHNTGYEIL 1332

Query:   280 GFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNC 337
             G    F     +   + K      + +F G + TIP K   ++  DE+   AK IGAVN 
Sbjct:  1333 GLPHKFDKFETESAQLVKEKLLDGNKNFGGAAVTIPLKLDIMQYMDELTDAAKVIGAVNT 1392

Query:   338 IIRRQSDGKLFGYNTDYVGAISA-IEDGLRGRLNVSGGVSSALAG 381
             +I    + K  G NTD++G  +A I +G+   +  + G+     G
Sbjct:  1393 VIPL-GNKKFKGDNTDWLGIRNALINNGVPEYVGHTAGLVIGAGG 1436

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA;IDA

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA;IDA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=IEA;TAS

POMBASE|SPAC1834.02 aro1 "pentafunctional aromatic polypeptide Aro1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 316 (116.3 bits), Expect = 3.8e-25, P = 3.8e-25
 Identities = 107/339 (31%), Positives = 171/339 (50%)

Query:    49 GADLVEIRLDGLKNFNPRENIKTL--IKE--------SPVPTLFTYRPIWEGGQYDGDEN 98
             G D +E+R+D LK+      I +L  + E        + +P +FT R I +GG +  D+ 
Sbjct:  1077 GCDAIEVRVDYLKDPKSSNGISSLDFVAEQISLLRCSTTLPIIFTIRTISQGGLFPNDKE 1136

Query:    99 ERVDVLRL-AMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSN 157
             E    L L AM  G D++DVEL  + E  + +   K    K+I+S H+   T S      
Sbjct:  1137 EEAKELMLSAMRYGCDFVDVELGWSSETINILYQHKGYT-KLIMSWHDLSGTWSWARPHE 1195

Query:   158 LVARIQ--ASGADIVKFATTALDITDVARV--FQ--ITVHSQVPIIGLVMGERGLISRIL 211
              + +++  +S AD++K    A ++ D   +  F+  IT    +P+I   MG  G +SRIL
Sbjct:  1196 WMQKVELASSYADVIKLVGMANNLNDNLELEEFRTRITNSMDIPLILFNMGRFGQLSRIL 1255

Query:   212 CAKFGGFLTFGTLENGIVSAPGQPTIKDLLDL-YNFRQMGPDTKVFGIIGKPVGHSKSPI 270
               KF   +T   L +   +APGQ T+K L +      ++ P+ K F + GKP+ HS+SPI
Sbjct:  1256 -NKFMTPVTHPLLPSK--AAPGQLTVKQLNEARVLIGEILPE-KFF-LFGKPIKHSRSPI 1310

Query:   271 LYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAK 330
             L++ A++ +G    +     D + +  +  +  DF G + TIP+K + +K  DE+   A+
Sbjct:  1311 LHSTAYELLGLPHTYEAFETDTVDEVQKVLNLPDFGGANVTIPYKLSVMKFMDELSDEAR 1370

Query:   331 SIGAVNCIIRRQSDGKLF--GYNTDYVGAISAIEDGLRG 367
               GAVN II  +   KL   G NTD+ G      + L G
Sbjct:  1371 FFGAVNTIIPIRIGDKLVLRGDNTDWRGIYDTFANALDG 1409

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

ASPGD|ASPL0000055969 aromA [Emericella nidulans (taxid:162425)]

 Score = 281 (104.0 bits), Expect = 4.2e-21, P = 4.2e-21
 Identities = 104/343 (30%), Positives = 162/343 (47%)

Query:    49 GADLVEIRLDGLK-----NFNPR-----ENIKTLIKESPVPTLFTYRPIWEGGQY-DGDE 97
             G+D VE+R+D LK     N  P      E +  L     +P +FT R   +GG++ D   
Sbjct:  1074 GSDAVELRVDLLKDPASNNDIPSVDYVVEQLSFLRSRVTLPIIFTIRTQSQGGRFPDNAH 1133

Query:    98 NERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSN 157
             +  +++ RLA   G +++D+E+    +   ++   K    K+I S H+ +   S  ++S 
Sbjct:  1134 DAALELYRLAFRSGCEFVDLEIAFPEDMLRAVTEMKGFS-KIIASHHDPKGELSWANMSW 1192

Query:   158 LVARIQA-SGADIVKFATTALDITD--VARVFQ---ITVHSQVPIIGLVMGERGLISRIL 211
             +    +A    DI+K    A +I D    R F+      H  VP+I + MG++G +SRIL
Sbjct:  1193 IKFYNKALEYGDIIKLVGVARNIDDNTALRKFKNWAAEAHD-VPLIAINMGDQGQLSRIL 1251

Query:   212 CAKFGGFLTFGTLEN-GIVSAPGQPTIKDLLDLYNFRQMGP-DTKVFGIIGKPVGHSKSP 269
                  GF+T  +  +    +APGQ +  ++        MG    K F I G P+  S+SP
Sbjct:  1252 ----NGFMTPVSHPSLPFKAAPGQLSATEIRK--GLSLMGEIKPKKFAIFGSPISQSRSP 1305

Query:   270 ILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329
              L+N  F  VG    +  L   +     +   S DF G S TIP K   +   DEV   A
Sbjct:  1306 ALHNTLFAQVGLPHNYTRLETTNAQDVQEFIRSPDFGGASVTIPLKLDIMPLLDEVAAEA 1365

Query:   330 KSIGAVNCIIR----RQSDGKLFGYNTDYVGAISAIED-GLRG 367
             + IGAVN II     + +  +L G NTD+ G I ++   G+ G
Sbjct:  1366 EIIGAVNTIIPVSTGKNTPSRLVGRNTDWQGMILSLRKAGVYG 1408

GO:0070403 "NAD+ binding" evidence=IPI

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA;RCA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=RCA;IDA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=RCA;IDA

GO:0004765 "shikimate kinase activity" evidence=RCA;IDA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=RCA;IDA

GO:0009423 "chorismate biosynthetic process" evidence=IDA

GO:0003856 "3-dehydroquinate synthase activity" evidence=RCA

GO:0005737 "cytoplasm" evidence=IEA

CGD|CAL0004346 ARO1 [Candida albicans (taxid:5476)]

 Score = 279 (103.3 bits), Expect = 6.8e-21, P = 6.8e-21
 Identities = 105/380 (27%), Positives = 183/380 (48%)

Query:    13 KLVSGGMRKNPTL---ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR--- 66
             KL++G  R    +     V +    ++++V D+ ++   GAD VE+R+D  K+ +     
Sbjct:  1029 KLITGAERPVVPVGRSAAVVLTSPDLNEVVRDL-ESITIGADAVELRVDLFKDTSAEFVA 1087

Query:    67 ENIKTLIKESPVPTLFTYRPIWEGGQYDGDEN--ERVDVLRLAMELGADYIDVELQVARE 124
               I  + K + +P ++T R + +GG++  DEN  E   +L L + LG  Y+D++L    E
Sbjct:  1088 AQIAVIRKHADLPIIYTVRTMSQGGKFP-DENVDELKSLLLLGIRLGVAYVDLQLTAPNE 1146

Query:   125 FNDSIRGKKPEKCKVIVSSH--NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDV 182
               + I  KK    +VI +    N +   +  +  N   +  +  ADIV+    A  I D 
Sbjct:  1147 LIEEISSKKGFT-RVIGTYQDINGELKWNNVEWKNKYNQGVSMNADIVRLVGKANSIQDN 1205

Query:   183 ARVFQITVHSQV-PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQ-PTIKDL 240
               +      + + P+I   +G +G +S++L     G  TF  + + ++    +  TI +L
Sbjct:  1206 LDLENFKKQNTLKPLIAFNLGSQGKLSQVL----NG--TFTPISHKLLPNDEEFLTIGEL 1259

Query:   241 LDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTY 300
                Y F   G   K F +IG P+ HS+SP L+N  +K++     F      D+   +   
Sbjct:  1260 NQTY-FDIGGFTAKKFWVIGSPIEHSRSPNLHNAGYKALNLPYQFGRFEATDVDVVYDNL 1318

Query:   301 SSN-DFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AI 358
              +  DF G + T+P K   +K   ++   A++IGAVN +I    +G  FG NTD+VG + 
Sbjct:  1319 INKPDFGGLAITMPLKLDIMKFATKLSDAAETIGAVNTLI--PIEGGYFGDNTDWVGISN 1376

Query:   359 SAIEDGLRGRLNVSGGVSSA 378
             S I  G+  + + +G V  A
Sbjct:  1377 SFIRAGVPPKSSSNGLVVGA 1396

GO:0005829 "cytosol" evidence=IEA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA

TIGR_CMR|DET_0466 DET_0466 "3-dehydroquinate dehydratase, type I" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 248 (92.4 bits), Expect = 1.6e-20, P = 1.6e-20
 Identities = 74/227 (32%), Positives = 107/227 (47%)

Query:    21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
             KNP + CV      + ++        + GA   E+RLD L   + RE    L K    P 
Sbjct:     2 KNPPVCCV------ITRLPEAESLKKSEGAAFYELRLD-LLGESWREAAAMLDK----PF 50

Query:    81 LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
             + T R   EGG + G E ER+ +L  A   GA  +D+E           R +   KC  +
Sbjct:    51 MATCRRSAEGGSFSGSEEERIGLLEKAAAAGAFMLDIEYSTPHLGEVLKRLRTQSKC--L 108

Query:   141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVP---II 197
             VS HN+  TPS  DL  LV  +    ADI K  TTA  I D  ++  +    ++P   I+
Sbjct:   109 VSHHNFADTPSAGDLKTLVKDMLNYPADIYKVITTATSINDNIKLLNLI--KEIPDKKIV 166

Query:   198 GLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY 244
                MG  G++SRILC   G   T+ +L +   SA GQ T+  ++++Y
Sbjct:   167 AFAMGNLGILSRILCPLAGSPFTYASLNDSNQSASGQMTLAQMIEIY 213

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|BA_4561 BA_4561 "shikimate 5-dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 223 (83.6 bits), Expect = 4.5e-17, P = 4.5e-17
 Identities = 42/111 (37%), Positives = 72/111 (64%)

Query:   254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
             +++G+IG P+GHS SP+++N+AF+ +  +  +   LV +  + +  +   +   +GF+ T
Sbjct:     3 QLYGVIGNPIGHSLSPVMHNDAFEHLKMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query:   312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
              PHK A +   DE+D +AK IGAVN ++ +  DGKL GYNTD +G + A++
Sbjct:    63 TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVRALQ 111

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

UNIPROTKB|P05194 aroD "AroD" [Escherichia coli K-12 (taxid:83333)]

 Score = 209 (78.6 bits), Expect = 3.0e-16, P = 3.0e-16
 Identities = 63/227 (27%), Positives = 113/227 (49%)

Query:    26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKT---LIKES-PV-PT 80
             I V +M + +  +  +      +  D++E R+D   + +  E++     +++E+ P  P 
Sbjct:    18 IIVSLMAKDIASVKSEALAYREADFDILEWRVDHYADLSNVESVMAAAKILRETMPEKPL 77

Query:    81 LFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVARE-FNDSIRGKKPEKCK 138
             LFT+R   EGG+        + + R A++ G  D ID+EL    +   +++        K
Sbjct:    78 LFTFRSAKEGGEQAISTEAYIALNRAAIDSGLVDMIDLELFTGDDQVKETVAYAHAHDVK 137

Query:   139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV---- 194
             V++S+H++  TP  E++   + ++Q+  ADI K A      +DV  +   T+  Q     
Sbjct:   138 VVMSNHDFHKTPEAEEIIARLRKMQSFDADIPKIALMPQSTSDVLTLLAATLEMQEQYAD 197

Query:   195 -PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPGQ ++ DL
Sbjct:   198 RPIITMSMAKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVNDL 242

GO:0003824 "catalytic activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=IEA

TIGR_CMR|CHY_0623 CHY_0623 "shikimate 5-dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 206 (77.6 bits), Expect = 6.4e-16, P = 6.4e-16
 Identities = 51/137 (37%), Positives = 83/137 (60%)

Query:   252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFS 309
             +TK+ GIIG P+ H+ SP ++NEAFK++  N +++ L V  + + +      + +F G +
Sbjct:     6 ETKLTGIIGYPLKHTLSPQMHNEAFKALNLNFLYLPLEVAEESLPQAIYGLKAFNFRGIN 65

Query:   310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LR 366
              TIP+KE      DEV T AK+IGAVN I+  +  G+L GYNTD  G + ++++    + 
Sbjct:    66 VTIPYKEKVFPFLDEVATEAKTIGAVNTIVHDR--GRLIGYNTDAPGFLLSLKENDVEVT 123

Query:   367 GR---LNVSGGVSSALA 380
             G+   L  +GG + A+A
Sbjct:   124 GKKVLLLGAGGAARAVA 140

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SQT8	DHQSD_ARATH	1, ., 1, ., 1, ., 2, 5	0.7352	0.8478	0.6932	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.2.1.10	0.946
3rd Layer	1.1.1	0.963
3rd Layer	4.2.1	0.963
4th Layer	1.1.1.25	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	493
PLN02520	529	PLN02520, PLN02520, bifunctional 3-dehydroquinate	0.0
pfam01487	222	pfam01487, DHquinase_I, Type I 3-dehydroquinase	8e-83
TIGR01093	228	TIGR01093, aroD, 3-dehydroquinate dehydratase, typ	5e-72
cd00502	225	cd00502, DHQase_I, Type I 3-dehydroquinase, (3-deh	1e-64
COG0710	231	COG0710, AroD, 3-dehydroquinate dehydratase [Amino	2e-52
COG0169	283	COG0169, AroE, Shikimate 5-dehydrogenase [Amino ac	3e-47
PRK00258	278	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewe	1e-45
PRK02412	253	PRK02412, aroD, 3-dehydroquinate dehydratase; Prov	1e-40
PRK09310	477	PRK09310, aroDE, bifunctional 3-dehydroquinate deh	7e-40
TIGR00507	270	TIGR00507, aroE, shikimate 5-dehydrogenase	1e-34
pfam08501	83	pfam08501, Shikimate_dh_N, Shikimate dehydrogenase	3e-28
PRK13575	238	PRK13575, PRK13575, 3-dehydroquinate dehydratase;	4e-25
PRK12548	289	PRK12548, PRK12548, shikimate 5-dehydrogenase; Pro	1e-22
TIGR01809	282	TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase	9e-20
PRK12749	288	PRK12749, PRK12749, quinate/shikimate dehydrogenas	8e-14
PRK12549	284	PRK12549, PRK12549, shikimate 5-dehydrogenase; Rev	1e-13
PRK14027	283	PRK14027, PRK14027, quinate/shikimate dehydrogenas	2e-09
PRK12550	272	PRK12550, PRK12550, shikimate 5-dehydrogenase; Rev	3e-08
cd01065	155	cd01065, NAD_bind_Shikimate_DH, NAD(P) binding dom	9e-08
pfam01488	133	pfam01488, Shikimate_DH, Shikimate / quinate 5-deh	6e-07
PRK13576	216	PRK13576, PRK13576, 3-dehydroquinate dehydratase;	2e-06
cd00401	402	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N	0.004

>gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

 Score =  804 bits (2079), Expect = 0.0
 Identities = 334/413 (80%), Positives = 364/413 (88%), Gaps = 1/413 (0%)

Query: 3   SPNLLVASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN 62
                +AS     SGG+R+NPTLICVPIM +SVDKM+++M KA   GADLVEIRLD LKN
Sbjct: 2   VSTASLASDDLQGSGGVRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKN 61

Query: 63  FNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVA 122
           FNPRE++KTLIK+SP+PTL TYRP WEGGQY+GDEN+R D LRLAMELGADY+DVEL+VA
Sbjct: 62  FNPREDLKTLIKQSPLPTLVTYRPKWEGGQYEGDENKRQDALRLAMELGADYVDVELKVA 121

Query: 123 REFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDV 182
            EF +SI GKKPEKCKVIVSSHNY+ TPSVE+L NLVARIQA+GADIVK ATTALDITDV
Sbjct: 122 HEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQATGADIVKIATTALDITDV 181

Query: 183 ARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLD 242
           AR+FQITVHSQVP IGLVMGERGLISRILC KFGG+LTFGTLE G VSAPGQPTIKDLLD
Sbjct: 182 ARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLD 241

Query: 243 LYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSS 302
           LYNFRQ+GPDTKV+GIIGKPVGHSKSPIL+NEAFKSVGFNGV+VHLLVDD+AKF QTYSS
Sbjct: 242 LYNFRQIGPDTKVYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSS 301

Query: 303 NDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
            DFAGFSCTIPHKE A+KCCDEVD +AKSIGA+N IIRR SDGKL GYNTDY+GAISAIE
Sbjct: 302 PDFAGFSCTIPHKEDALKCCDEVDPIAKSIGAINTIIRRPSDGKLVGYNTDYIGAISAIE 361

Query: 363 DGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG 415
           DGLR     S    S LAGKLFVVIGAGGAGKALAYGAK KGARVVIANRTY 
Sbjct: 362 DGLRA-SGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE 413

Length = 529

>gnl|CDD|216526 pfam01487, DHquinase_I, Type I 3-dehydroquinase

 Score =  255 bits (653), Expect = 8e-83
 Identities = 87/225 (38%), Positives = 135/225 (60%), Gaps = 9/225 (4%)

Query: 27  CVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFT 83
           CVP+ G S+++ + ++ +    GAD VE+RLD L++ +     E +  L +++ +P +FT
Sbjct: 1   CVPVTGPSLEEALAELEEL-EEGADAVELRLDLLEDVDAEDVSEQLSALREKTGLPIIFT 59

Query: 84  YRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS 143
            R   EGG++DG E E +++L+ A+ LG DYID+EL  A +   ++   K    K+I+S 
Sbjct: 60  VRTKSEGGRFDGSEEEYLELLKEALRLGPDYIDIELSSAPDELLAVIIAKKGGTKIILSY 119

Query: 144 HNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ---VPIIGLV 200
           H+++ TPS EDL +L   +Q  GADIVK A  A  I DV R+ + T  ++    P+I + 
Sbjct: 120 HDFEGTPSWEDLLSLYEEMQKLGADIVKIAVMANSIEDVLRLLRFTSEAKELDKPLIAIS 179

Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
           MGE G ISRIL   FG  LT+ +L     SAPGQ T+++L +   
Sbjct: 180 MGELGRISRILGPVFGSVLTYASLGK--ASAPGQITLEELREALE 222

Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate giving dehydroshikimate. Dehydroquinase functions in the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Type II 3-dehydroquinase catalyzes the trans-dehydration of 3-dehydroshikimate see pfam01220. Length = 222

>gnl|CDD|233268 TIGR01093, aroD, 3-dehydroquinate dehydratase, type I

 Score =  227 bits (581), Expect = 5e-72
 Identities = 84/231 (36%), Positives = 129/231 (55%), Gaps = 14/231 (6%)

Query: 25  LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPVP 79
            I VP+    +++ +    K    GAD+VE+R+D LK+ +   ++  LI++        P
Sbjct: 1   KIFVPLTAPDLEEALATAEKIC-KGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKP 59

Query: 80  TLFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREF-NDSIRGKKPEKC 137
            +FT R I EGG++ G+E E ++ L R A   G D++D+EL +  +   + I   K    
Sbjct: 60  LIFTIRTISEGGKFPGNEEEYLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGT 119

Query: 138 KVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ---- 193
           K+I+S H++Q TPS E++   + +  + GADIVK A  A    DV  + +IT        
Sbjct: 120 KIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEHAD 179

Query: 194 VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY 244
           VP+I + MG+RG ISR+L A FG  LTFG+L     SAPGQ ++ DL +L 
Sbjct: 180 VPLITMSMGDRGKISRVLGAVFGSVLTFGSLGK--ASAPGQISVDDLRELL 228

This model detects 3-dehydroquinate dehydratase, type I, either as a monofunctional protein or as a domain of a larger, multifunctional protein. It is often found fused to shikimate 5-dehydrogenase (EC 1.1.1.25), and sometimes additional domains. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by the model TIGR01088 [Amino acid biosynthesis, Aromatic amino acid family]. Length = 228

>gnl|CDD|188633 cd00502, DHQase_I, Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase)

 Score =  208 bits (531), Expect = 1e-64
 Identities = 81/231 (35%), Positives = 127/231 (54%), Gaps = 15/231 (6%)

Query: 25  LICVPIMGESVDKMVVDMGKA--NASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVP 79
            ICVP+ G     ++ +         GAD VE+R+D L++ +     E +  L + +P+P
Sbjct: 1   KICVPLTG---PDLLEEALSLLELLLGADAVELRVDLLEDPSIDDVAEQLSLLRELTPLP 57

Query: 80  TLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKV 139
            +FT R   EGG ++G E E +++L  A++LG DY+D+EL  A    + I  +K    K+
Sbjct: 58  IIFTVRTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDSAL-LEELINSRKKGNTKI 116

Query: 140 IVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITV----HSQVP 195
           I S H++  TPS E+L + + ++ A GADIVK A  A  I D  R+ + T        +P
Sbjct: 117 IGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLYDIP 176

Query: 196 IIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
           +I + MGE G +SRIL   FG  LT+ +L     SAPGQ ++++L    + 
Sbjct: 177 LIAINMGELGKLSRILSPVFGSPLTYASLPE--PSAPGQLSVEELKQALSL 225

Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase). Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism. Length = 225

>gnl|CDD|223782 COG0710, AroD, 3-dehydroquinate dehydratase [Amino acid transport and metabolism]

 Score =  176 bits (449), Expect = 2e-52
 Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 9/223 (4%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN-FNPRENIKTLIKESPV-PTL 81
             I VP++G  + ++     K+    AD+VE+R+D L++     E  K L ++ P  P +
Sbjct: 2   PKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLI 61

Query: 82  FTYRPIWEGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
           FT+R + EGG++ G E E +++L+ LA   G DYID+EL    +    I  K  +K  VI
Sbjct: 62  FTFRTVKEGGEFPGSEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEII-KFAKKHGVI 120

Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV---PII 197
           VS H+++ TP +E++   + ++++ GADIVK A       DV  + + T   +    P+I
Sbjct: 121 VSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSKEDVLDLLEATREFKEAEKPVI 180

Query: 198 GLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
            + MG+ G ISR+    FG  +T+ +L+    SAPGQ ++ +L
Sbjct: 181 TISMGKTGKISRVAGPVFGSPITYASLDK--PSAPGQISVDEL 221

Length = 231

>gnl|CDD|223247 COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

 Score =  164 bits (418), Expect = 3e-47
 Identities = 64/168 (38%), Positives = 101/168 (60%), Gaps = 13/168 (7%)

Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           M   TK+FG+IG P+ HS SP ++N AF+++G + V++   V  +D+ +      +  F 
Sbjct: 2   MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFR 61

Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
           G + TIP KEAA+   DE+   A+ IGAVN ++R   DGKL GYNTD +G + A+++   
Sbjct: 62  GLNVTIPFKEAALPLLDELSPRARLIGAVNTLVRE-DDGKLRGYNTDGIGFLRALKE--- 117

Query: 367 GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRT 413
                  G+   + GK  +++GAGGA +A+A+  A+A   R+ + NRT
Sbjct: 118 ------FGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT 159

Length = 283

>gnl|CDD|234703 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed

 Score =  160 bits (407), Expect = 1e-45
 Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 15/164 (9%)

Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSC 310
           T+++ +IG P+ HSKSP+++N AFK +G +GV++ +LV  +D+    + + +    G + 
Sbjct: 5   TRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANV 64

Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
           T+P KEAA    DE+   A+ IGAVN ++    DG+L G NTD +G + A+E+ L     
Sbjct: 65  TVPFKEAAFALADELSERARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERL----- 117

Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRT 413
                   L GK  +++GAGGA +A+         A + I NRT
Sbjct: 118 -----GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT 156

Length = 278

>gnl|CDD|235036 PRK02412, aroD, 3-dehydroquinate dehydratase; Provisional

 Score =  146 bits (371), Expect = 1e-40
 Identities = 67/229 (29%), Positives = 119/229 (51%), Gaps = 14/229 (6%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
             I VPIMG+++++++ +    +   AD++E R D L+  +  E++           +  
Sbjct: 16  PKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGK 75

Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA-DYIDVELQVARE-FNDSIRGKKPEK 136
           P LFT+R   EGG+    + E + +++  ++ G  DYIDVEL   ++   + +       
Sbjct: 76  PLLFTFRTAKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHG 135

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH----- 191
            KV++S H+++ TP  E++   + ++++ GADIVK A       DV  +   T       
Sbjct: 136 VKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELY 195

Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
           +  P+I + MG+ G ISR+    FG   TF +L+    SAPGQ +++DL
Sbjct: 196 ADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDK--ASAPGQISVEDL 242

Length = 253

>gnl|CDD|137204 PRK09310, aroDE, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

 Score =  149 bits (379), Expect = 7e-40
 Identities = 109/365 (29%), Positives = 172/365 (47%), Gaps = 28/365 (7%)

Query: 51  DLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL 110
           D +E+R+D L + +  E +K LI+ +P+P L T++      Q    +     +  LA +L
Sbjct: 26  DCIELRVDLLLSLSDLE-LKKLIELAPIPIL-TWKKHESCSQAAWIDK----MQSLA-KL 78

Query: 111 GADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV 170
             +Y+D++    +E    IR   P K K+I+S H    T   ED+  L   + AS AD  
Sbjct: 79  NPNYLDIDKDFPKEALIRIRKLHP-KIKIILSYH----TSEHEDIIQLYNEMLASAADYY 133

Query: 171 KFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVS 230
           K A ++   TD+  +             L MG  G  SRIL         +         
Sbjct: 134 KIAVSSSSSTDLLNIIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPV 193

Query: 231 APGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV 290
           APGQ +++ LL  YN+  +   + ++G+IG PV  S S + +N  F  +  N  ++ L +
Sbjct: 194 APGQLSLEHLL-FYNYANLSAQSPIYGLIGDPVDRSISHLSHNPLFSQLSLNCPYIKLPL 252

Query: 291 D--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLF 348
              ++ KFF T     F G S T+P K A +   D++D   K  G+ N ++ R   GK+ 
Sbjct: 253 TPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVFRN--GKIE 310

Query: 349 GYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV 408
           GYNTD  G  S ++     + N+       L  +   ++GAGGA KA+A      GA ++
Sbjct: 311 GYNTDGEGLFSLLK-----QKNIP------LNNQHVAIVGAGGAAKAIATTLARAGAELL 359

Query: 409 IANRT 413
           I NRT
Sbjct: 360 IFNRT 364

Length = 477

>gnl|CDD|161904 TIGR00507, aroE, shikimate 5-dehydrogenase

 Score =  130 bits (329), Expect = 1e-34
 Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 15/162 (9%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
           K++G+IG P+ HSKSP+++N  FK +G  G ++  LV  DD+      + +  F G + T
Sbjct: 1   KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVT 60

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
            P KE A +  DE+D  AK  GAVN ++    DGKL GYNTD +G +S +E  +  R N 
Sbjct: 61  SPFKERAFQFLDEIDGRAKLAGAVNTLVLE--DGKLVGYNTDGIGLVSDLEQLIPLRPN- 117

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413
                     +  ++IGAGGA KA+A         V+IANRT
Sbjct: 118 ----------QNVLIIGAGGAAKAVALELLKADCNVIIANRT 149

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain [Amino acid biosynthesis, Aromatic amino acid family]. Length = 270

>gnl|CDD|149523 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate binding domain

 Score =  106 bits (268), Expect = 3e-28
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 2/83 (2%)

Query: 258 IIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHK 315
           +IG P+ HS SP+++N AFK++G NGV+V   V  D++ +F +   +  F G + TIPHK
Sbjct: 1   LIGNPISHSLSPLIHNAAFKALGLNGVYVAFEVPPDNLPEFVEGLRALGFRGLNVTIPHK 60

Query: 316 EAAVKCCDEVDTVAKSIGAVNCI 338
           EAA+   DE+   AK IGAVN I
Sbjct: 61  EAAIPLLDELSPEAKRIGAVNTI 83

This domain is the substrate binding domain of shikimate dehydrogenase. Length = 83

>gnl|CDD|184156 PRK13575, PRK13575, 3-dehydroquinate dehydratase; Provisional

 Score =  103 bits (258), Expect = 4e-25
 Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 18/228 (7%)

Query: 33  ESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTL-IKESPVPTLFTYRPIW 88
            S+++ ++          D++E+R+D  +N       E I  L + +     L TYR   
Sbjct: 14  LSIEETLIQKINHRIDAIDIIELRIDQWENVTVDQLAEMITKLKVLQDSFKLLVTYRTKL 73

Query: 89  EGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFN---DSIRGKKPEKCKVIVSSH 144
           +GG      +  +++L  LA   G D ID+E Q   +       I   +    +V++S H
Sbjct: 74  QGGYGQFTNDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHH 133

Query: 145 NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQI------TVHSQVPIIG 198
           N++ TP +++L  +  ++Q    + VK A    +  DV  + Q       T+  +V  +G
Sbjct: 134 NFESTPPLDELKFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV--VG 191

Query: 199 LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
           + M + GLISR     FGG L++G +  G   APGQ  + DL      
Sbjct: 192 ISMSKLGLISRTAQGVFGGALSYGCI--GEPQAPGQIHVTDLKAQVTL 237

Length = 238

>gnl|CDD|183585 PRK12548, PRK12548, shikimate 5-dehydrogenase; Provisional

 Score = 97.1 bits (242), Expect = 1e-22
 Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 16/163 (9%)

Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFV--HLLVDDIAKFFQTYSSNDFAGFSC 310
           T + G+IG PVGHS SP +YN +F+  G +  ++   + VD +    +   + +  G + 
Sbjct: 9   TGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANV 68

Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
           T+P K  A K  DE+   A+ IGAVN I+    DGKL G+ TD +G +  + +       
Sbjct: 69  TMPCKSEAAKYMDELSPAARIIGAVNTIV--NDDGKLTGHITDGLGFVRNLRE------- 119

Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANR 412
              GV   + GK   VIGAGGA  A+       GA+ + I N 
Sbjct: 120 --HGVD--VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNI 158

Length = 289

>gnl|CDD|233580 TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase, fungal AROM-type

 Score = 88.8 bits (220), Expect = 9e-20
 Identities = 53/163 (32%), Positives = 75/163 (46%), Gaps = 13/163 (7%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSN--DFAGFSCT 311
           K   IIGKP+ HS+SP L+N  ++ +G              +  +  S     F G S T
Sbjct: 6   KKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFGPQFGGASVT 65

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
           IP K A ++  DE    A  IG+VN ++R Q +G   G NTD+ G   A+          
Sbjct: 66  IPLKFAILRFADEHTDRASLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGAL---------A 115

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRT 413
           + G    LAG   +VIGAGG  +A  Y   + G   + + NR 
Sbjct: 116 NIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway [Amino acid biosynthesis, Aromatic amino acid family]. Length = 282

>gnl|CDD|183721 PRK12749, PRK12749, quinate/shikimate dehydrogenase; Reviewed

 Score = 71.6 bits (175), Expect = 8e-14
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 15/157 (9%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
           ++ G++  P+ HS SP + N+A +  G    ++   VD+       +   +    G   +
Sbjct: 8   ELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVS 67

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
           +P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++        
Sbjct: 68  MPNKQLACEYVDELTPAAKLVGAINTIV--NDDGYLRGYNTDGTGHIRAIKE-------- 117

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV 408
           SG     + GK  V++GAGGA  A+      +G + +
Sbjct: 118 SG---FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEI 151

Length = 288

>gnl|CDD|183586 PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 28/161 (17%)

Query: 257 GIIGKPVGHSKSPILYNEAFKSVGFNGVF-------VHLLVDDIAKFFQTYSSNDFAGFS 309
           G+IG  +  S SP ++     + G   V+       + L  D + +         FAG +
Sbjct: 9   GLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLN 68

Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL---- 365
            T P K+A +   DE+   A+++GAVN ++ R  DG+  G+NTD+ G   +   GL    
Sbjct: 69  ITHPCKQAVIPHLDELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGLPDAS 126

Query: 366 RGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR 406
             R+               V +GAGGAG A+A+     G  
Sbjct: 127 LERV---------------VQLGAGGAGAAVAHALLTLGVE 152

Length = 284

>gnl|CDD|172521 PRK14027, PRK14027, quinate/shikimate dehydrogenase; Provisional

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 19/162 (11%)

Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVF--VHLLVD-----DIAKFFQTYSSND 304
           D+ + G+IG+ +  S++P ++     + G   V+  +  L       D+           
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62

Query: 305 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
           F G + T P+K+A +   DEV   A  +GAVN ++   + G   G+NTD  G    +E+G
Sbjct: 63  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVV-IDATGHTTGHNTDVSGFGRGMEEG 121

Query: 365 LRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR 406
           L      S            V +GAGG G A+AY     G +
Sbjct: 122 LPNAKLDS-----------VVQVGAGGVGNAVAYALVTHGVQ 152

Length = 283

>gnl|CDD|183587 PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 17/115 (14%)

Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
           G + ++P KEA +   DE+D  A++I +VN I+   +DG L  YNTDY+    AI   L 
Sbjct: 62  GCAVSMPFKEAVIPLVDELDPSAQAIESVNTIV--NTDGHLKAYNTDYI----AIAKLLA 115

Query: 367 GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR---VVIANRTYGESL 418
                S  V   L      + G+GG  KA+A   +  G     +V  N   G++L
Sbjct: 116 -----SYQVPPDLV---VALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162

Length = 272

>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate dehydrogenase

 Score = 51.1 bits (123), Expect = 9e-08
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 12/63 (19%)

Query: 352 TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIA 410
           TD +G + A+E+               L GK  +++GAGGA +A+AY     GA ++VI 
Sbjct: 1   TDGLGFVRALEEAGIE-----------LKGKKVLILGAGGAARAVAYALAELGAAKIVIV 49

Query: 411 NRT 413
           NRT
Sbjct: 50  NRT 52

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DHs, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 155

>gnl|CDD|216527 pfam01488, Shikimate_DH, Shikimate / quinate 5-dehydrogenase

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTY 414
           L GK  ++IGAG   +  A    +KGA+ + IANRT 
Sbjct: 10  LKGKKVLLIGAGEMARLAAKHLLSKGAKKITIANRTL 46

This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyzes the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyzes the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate. Length = 133

>gnl|CDD|237433 PRK13576, PRK13576, 3-dehydroquinate dehydratase; Provisional

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 11/133 (8%)

Query: 46  NASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR 105
           N   ADL+E+RLD LK+      I+ L K      + T R   EGG  + D+  ++ +L+
Sbjct: 22  NFLDADLIELRLDYLKDR-EVSVIEFLDKYKD-KLIVTLRDKAEGGINELDDELKISLLK 79

Query: 106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQAS 165
              +    Y DVE    +++N     K       IVS H + Y P+ E++  +V++    
Sbjct: 80  ELYDKQFLY-DVEASFLQKYNVPYDNK-------IVSIHYFDYLPTSEEVKEIVSKFYEK 131

Query: 166 GADIVKFATTALD 178
            A  VK A   L 
Sbjct: 132 -AFSVKIAVLGLK 143

Length = 216

>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains

 Score = 39.4 bits (93), Expect = 0.004
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
           +AGK+ VV G G  GK  A  A+  GARV++
Sbjct: 193 IAGKVVVVAGYGWVGKGCAMRARGLGARVIV 223

S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	493
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	100.0
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	100.0
PRK02412	253	aroD 3-dehydroquinate dehydratase; Provisional	100.0
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	100.0
TIGR01093	228	aroD 3-dehydroquinate dehydratase, type I. Type II	100.0
PF01487	224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	100.0
COG0710	231	AroD 3-dehydroquinate dehydratase [Amino acid tran	100.0
cd00502	225	DHQase_I Type I 3-dehydroquinase, (3-dehydroquinat	100.0
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	100.0
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	100.0
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	100.0
PRK13575	238	3-dehydroquinate dehydratase; Provisional	100.0
PRK12548	289	shikimate 5-dehydrogenase; Provisional	100.0
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	100.0
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	100.0
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	100.0
PRK13576	216	3-dehydroquinate dehydratase; Provisional	100.0
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	100.0
PRK01261	229	aroD 3-dehydroquinate dehydratase; Provisional	100.0
KOG0692	595	consensus Pentafunctional AROM protein [Amino acid	99.95
PF08501	83	Shikimate_dh_N: Shikimate dehydrogenase substrate	99.94
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.83
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	99.43
PRK08291	330	ectoine utilization protein EutC; Validated	98.98
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.91
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.88
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.69
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.63
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.56
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.52
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.41
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.2
PLN00203	519	glutamyl-tRNA reductase	98.11
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.97
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.77
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.76
PRK06141	314	ornithine cyclodeaminase; Validated	97.69
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.67
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.65
PRK08618	325	ornithine cyclodeaminase; Validated	97.63
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.59
PRK07340	304	ornithine cyclodeaminase; Validated	97.59
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.52
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.46
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.44
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.4
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.25
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.07
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.04
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.03
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.95
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.94
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.77
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.77
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.76
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.72
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.71
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.69
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.69
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.61
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.51
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.5
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.47
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.46
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	96.45
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.41
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.41
PRK14982	340	acyl-ACP reductase; Provisional	96.39
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.38
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.38
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.36
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.35
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	96.35
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.34
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.25
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	96.24
PRK07417	279	arogenate dehydrogenase; Reviewed	96.24
PRK08655	437	prephenate dehydrogenase; Provisional	96.23
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	96.2
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.18
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.18
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	96.18
KOG1208	314	consensus Dehydrogenases with different specificit	96.17
PRK13243	333	glyoxylate reductase; Reviewed	96.16
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.15
PRK07680	273	late competence protein ComER; Validated	96.13
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.12
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.11
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	96.1
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.09
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.09
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	96.08
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.07
PRK06046	326	alanine dehydrogenase; Validated	96.06
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	96.04
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.04
PRK05867	253	short chain dehydrogenase; Provisional	96.04
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.03
PRK08339	263	short chain dehydrogenase; Provisional	96.03
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.0
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.99
PRK05854	313	short chain dehydrogenase; Provisional	95.91
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.88
PRK06949	258	short chain dehydrogenase; Provisional	95.88
PRK05479	330	ketol-acid reductoisomerase; Provisional	95.87
PRK11572	248	copper homeostasis protein CutC; Provisional	95.87
PRK05872	296	short chain dehydrogenase; Provisional	95.84
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	95.84
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	95.84
PLN02256	304	arogenate dehydrogenase	95.84
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.83
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.83
PRK07060	245	short chain dehydrogenase; Provisional	95.83
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.82
PRK05866	293	short chain dehydrogenase; Provisional	95.8
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	95.8
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.78
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	95.77
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.77
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.76
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.75
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.75
KOG0725	270	consensus Reductases with broad range of substrate	95.73
PRK07063	260	short chain dehydrogenase; Provisional	95.72
PRK08862	227	short chain dehydrogenase; Provisional	95.72
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.7
PRK06057	255	short chain dehydrogenase; Provisional	95.7
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	95.68
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	95.67
PRK08265	261	short chain dehydrogenase; Provisional	95.66
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.65
PRK05717	255	oxidoreductase; Validated	95.65
PRK07478	254	short chain dehydrogenase; Provisional	95.64
PLN02780	320	ketoreductase/ oxidoreductase	95.62
PRK06125	259	short chain dehydrogenase; Provisional	95.61
PRK13403	335	ketol-acid reductoisomerase; Provisional	95.61
PRK07774	250	short chain dehydrogenase; Provisional	95.6
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	95.6
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	95.59
PRK09242	257	tropinone reductase; Provisional	95.59
PRK07574	385	formate dehydrogenase; Provisional	95.57
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.56
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	95.55
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	95.53
PRK08703	239	short chain dehydrogenase; Provisional	95.53
PRK06139	330	short chain dehydrogenase; Provisional	95.52
PRK09186	256	flagellin modification protein A; Provisional	95.51
PRK06172	253	short chain dehydrogenase; Provisional	95.51
PRK07062	265	short chain dehydrogenase; Provisional	95.49
PRK06196	315	oxidoreductase; Provisional	95.48
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	95.48
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.47
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.47
PLN02928	347	oxidoreductase family protein	95.46
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	95.46
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.45
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	95.45
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	95.44
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	95.43
PRK07890	258	short chain dehydrogenase; Provisional	95.43
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.43
PRK07825	273	short chain dehydrogenase; Provisional	95.42
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.41
PRK08507	275	prephenate dehydrogenase; Validated	95.4
PLN02688	266	pyrroline-5-carboxylate reductase	95.39
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.38
PRK08328	231	hypothetical protein; Provisional	95.38
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	95.37
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	95.37
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	95.35
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	95.34
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.34
PRK07814	263	short chain dehydrogenase; Provisional	95.31
PRK08589	272	short chain dehydrogenase; Validated	95.31
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.3
PRK06407	301	ornithine cyclodeaminase; Provisional	95.3
PRK06823	315	ornithine cyclodeaminase; Validated	95.3
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.29
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.27
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.26
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.25
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	95.23
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.23
PRK07067	257	sorbitol dehydrogenase; Provisional	95.23
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.22
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	95.21
PRK06197	306	short chain dehydrogenase; Provisional	95.2
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.19
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.19
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	95.18
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.16
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.16
PRK07831	262	short chain dehydrogenase; Provisional	95.15
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.14
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.14
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.13
PRK07035	252	short chain dehydrogenase; Provisional	95.12
PRK07326	237	short chain dehydrogenase; Provisional	95.1
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.08
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.07
PRK07589	346	ornithine cyclodeaminase; Validated	95.06
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.05
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.04
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.03
PRK07109	334	short chain dehydrogenase; Provisional	95.02
PRK12828	239	short chain dehydrogenase; Provisional	95.02
PRK07576	264	short chain dehydrogenase; Provisional	95.01
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.01
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.01
PRK12939	250	short chain dehydrogenase; Provisional	95.01
PRK12480	330	D-lactate dehydrogenase; Provisional	95.01
PRK07677	252	short chain dehydrogenase; Provisional	95.01
PRK06194	287	hypothetical protein; Provisional	95.0
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.0
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	94.99
PRK07454	241	short chain dehydrogenase; Provisional	94.99
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	94.99
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.98
PRK06138	252	short chain dehydrogenase; Provisional	94.96
PLN03139	386	formate dehydrogenase; Provisional	94.95
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	94.95
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	94.94
PRK05876	275	short chain dehydrogenase; Provisional	94.94
PRK06500	249	short chain dehydrogenase; Provisional	94.93
PRK07453	322	protochlorophyllide oxidoreductase; Validated	94.93
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	94.91
PRK08643	256	acetoin reductase; Validated	94.89
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.89
PLN02253	280	xanthoxin dehydrogenase	94.89
PRK05875	276	short chain dehydrogenase; Provisional	94.88
PRK12829	264	short chain dehydrogenase; Provisional	94.88
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	94.87
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	94.87
PRK09072	263	short chain dehydrogenase; Provisional	94.86
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	94.86
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.86
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	94.85
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	94.82
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.81
PRK12330	499	oxaloacetate decarboxylase; Provisional	94.81
PRK06199	379	ornithine cyclodeaminase; Validated	94.77
PRK05993	277	short chain dehydrogenase; Provisional	94.77
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.76
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	94.75
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.72
PTZ00117	319	malate dehydrogenase; Provisional	94.71
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	94.7
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	94.7
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	94.69
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	94.69
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.65
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.65
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.64
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	94.62
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	94.58
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.57
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	94.56
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	94.56
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	94.56
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.55
PRK08605	332	D-lactate dehydrogenase; Validated	94.54
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	94.53
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	94.5
PRK08213	259	gluconate 5-dehydrogenase; Provisional	94.48
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.47
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	94.45
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.45
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.45
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.42
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.42
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.42
PLN02712	667	arogenate dehydrogenase	94.42
PRK06720	169	hypothetical protein; Provisional	94.4
PRK12742	237	oxidoreductase; Provisional	94.39
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	94.39
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.37
PRK08251	248	short chain dehydrogenase; Provisional	94.37
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.37
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.36
PRK07074	257	short chain dehydrogenase; Provisional	94.36
PRK08628	258	short chain dehydrogenase; Provisional	94.35
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	94.35
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	94.34
PRK08303	305	short chain dehydrogenase; Provisional	94.33
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	94.33
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	94.33
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	94.32
PRK06101	240	short chain dehydrogenase; Provisional	94.31
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	94.31
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.29
PRK06914	280	short chain dehydrogenase; Provisional	94.29
PRK12331	448	oxaloacetate decarboxylase; Provisional	94.29
PRK07024	257	short chain dehydrogenase; Provisional	94.29
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	94.25
PRK08267	260	short chain dehydrogenase; Provisional	94.24
PLN02494	477	adenosylhomocysteinase	94.23
PRK08017	256	oxidoreductase; Provisional	94.2
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.2
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.19
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.17
PLN03209	576	translocon at the inner envelope of chloroplast su	94.17
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.15
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	94.15
PRK07904	253	short chain dehydrogenase; Provisional	94.12
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.11
PRK06182	273	short chain dehydrogenase; Validated	94.09
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.08
PRK08340	259	glucose-1-dehydrogenase; Provisional	94.08
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	94.07
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	94.04
PRK06940	275	short chain dehydrogenase; Provisional	94.04
PRK07102	243	short chain dehydrogenase; Provisional	94.04
PRK06545	359	prephenate dehydrogenase; Validated	94.01
PRK06223	307	malate dehydrogenase; Reviewed	93.99
PRK06180	277	short chain dehydrogenase; Provisional	93.98
PRK06841	255	short chain dehydrogenase; Provisional	93.98
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	93.93
PRK09291	257	short chain dehydrogenase; Provisional	93.92
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	93.92
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.91
PRK05884	223	short chain dehydrogenase; Provisional	93.91
PRK07806	248	short chain dehydrogenase; Provisional	93.88
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.86
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	93.86
PLN02477	410	glutamate dehydrogenase	93.86
PRK06181	263	short chain dehydrogenase; Provisional	93.86
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.82
PRK06114	254	short chain dehydrogenase; Provisional	93.82
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	93.79
PRK07791	286	short chain dehydrogenase; Provisional	93.77
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.77
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.76
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	93.75
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	93.71
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	93.71
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	93.71
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	93.71
PRK08936	261	glucose-1-dehydrogenase; Provisional	93.7
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	93.67
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	93.66
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	93.65
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	93.61
PRK10538	248	malonic semialdehyde reductase; Provisional	93.59
PRK06198	260	short chain dehydrogenase; Provisional	93.56
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	93.56
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	93.55
PRK07832	272	short chain dehydrogenase; Provisional	93.54
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	93.53
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.53
PRK06398	258	aldose dehydrogenase; Validated	93.5
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	93.49
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.48
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	93.45
PRK08223	287	hypothetical protein; Validated	93.43
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.36
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	93.35
PRK05599	246	hypothetical protein; Provisional	93.34
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	93.31
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	93.3
PRK08264	238	short chain dehydrogenase; Validated	93.3
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	93.28
PRK06436	303	glycerate dehydrogenase; Provisional	93.27
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	93.24
PRK12747	252	short chain dehydrogenase; Provisional	93.23
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	93.22
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	93.22
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	93.18
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.17
PRK07856	252	short chain dehydrogenase; Provisional	93.15
PRK06523	260	short chain dehydrogenase; Provisional	93.14
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	93.13
PRK06484	520	short chain dehydrogenase; Validated	93.12
TIGR02415	254	23BDH acetoin reductases. One member of this famil	93.11
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	93.1
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	93.09
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.08
PRK08324	681	short chain dehydrogenase; Validated	93.07
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.06
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	93.05
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	93.04
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	93.04
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	93.03
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	93.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	92.99
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	92.96
PRK08226	263	short chain dehydrogenase; Provisional	92.9
PRK12746	254	short chain dehydrogenase; Provisional	92.89
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	92.89
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	92.87
PRK14041	467	oxaloacetate decarboxylase; Provisional	92.85
PRK05855	582	short chain dehydrogenase; Validated	92.85
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	92.84
PLN02712	667	arogenate dehydrogenase	92.83
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.8
PRK07201	657	short chain dehydrogenase; Provisional	92.79
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	92.79
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	92.78
PLN02602	350	lactate dehydrogenase	92.76
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	92.74
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	92.74
PRK06924	251	short chain dehydrogenase; Provisional	92.71
PRK08278	273	short chain dehydrogenase; Provisional	92.71
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	92.68
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	92.67
PRK05650	270	short chain dehydrogenase; Provisional	92.66
PRK12779	944	putative bifunctional glutamate synthase subunit b	92.63
PRK06567	1028	putative bifunctional glutamate synthase subunit b	92.63
PRK07775	274	short chain dehydrogenase; Provisional	92.57
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	92.56
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	92.55
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	92.54
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	92.52
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	92.49
PRK06484	520	short chain dehydrogenase; Validated	92.49
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	92.48
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.48
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	92.47
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	92.47
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	92.46
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	92.46
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	92.44
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	92.44
PRK09282	592	pyruvate carboxylase subunit B; Validated	92.43
PRK05693	274	short chain dehydrogenase; Provisional	92.42
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	92.41
PRK06482	276	short chain dehydrogenase; Provisional	92.41
PRK06153	393	hypothetical protein; Provisional	92.4
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	92.4
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	92.37
PRK07985	294	oxidoreductase; Provisional	92.32
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	92.26
COG0569	225	TrkA K+ transport systems, NAD-binding component [	92.25
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	92.25
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	92.21
PRK08263	275	short chain dehydrogenase; Provisional	92.18
COG0281	432	SfcA Malic enzyme [Energy production and conversio	92.17
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	92.17
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	92.17
PRK06483	236	dihydromonapterin reductase; Provisional	92.14
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	92.12
PRK08177	225	short chain dehydrogenase; Provisional	92.1
PRK12743	256	oxidoreductase; Provisional	92.09
PRK09135	249	pteridine reductase; Provisional	92.09
PRK07226	267	fructose-bisphosphate aldolase; Provisional	92.07
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.07
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	92.03
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	92.0
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	91.96
PRK07226	267	fructose-bisphosphate aldolase; Provisional	91.96
PRK06701	290	short chain dehydrogenase; Provisional	91.95
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	91.87
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	91.83
PRK12938	246	acetyacetyl-CoA reductase; Provisional	91.83
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	91.83
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	91.8
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	91.79
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	91.79
PRK06128	300	oxidoreductase; Provisional	91.79
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	91.78
PRK06953	222	short chain dehydrogenase; Provisional	91.77
PRK14031	444	glutamate dehydrogenase; Provisional	91.74
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.73
PRK06847	375	hypothetical protein; Provisional	91.71
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.71
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.7
PRK14030	445	glutamate dehydrogenase; Provisional	91.66
PRK14040	593	oxaloacetate decarboxylase; Provisional	91.66
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	91.65
PRK08309	177	short chain dehydrogenase; Provisional	91.58
PRK13304	265	L-aspartate dehydrogenase; Reviewed	91.54
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	91.53
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.52
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	91.5
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.49
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.43
PRK07411	390	hypothetical protein; Validated	91.4
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	91.38
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	91.36
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	91.33
PLN02334	229	ribulose-phosphate 3-epimerase	91.29
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	91.28
PRK08163	396	salicylate hydroxylase; Provisional	91.27
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	91.26
PRK12367	245	short chain dehydrogenase; Provisional	91.26
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	91.26
PRK09414	445	glutamate dehydrogenase; Provisional	91.25
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	91.23
PRK12827	249	short chain dehydrogenase; Provisional	91.2
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.18
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	91.17
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	91.15
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.14
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	91.12
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	91.1
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	91.09
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	91.03
PRK10637	457	cysG siroheme synthase; Provisional	90.99
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	90.99
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	90.98

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=100.00  E-value=1.3e-100  Score=827.88  Aligned_cols=467  Identities=73%  Similarity=1.088  Sum_probs=406.8

Q ss_pred             ccccccccccCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCC
Q 011136            9 ASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIW   88 (493)
Q Consensus         9 ~~~~~~~~~~~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~   88 (493)
                      ||.---|||+|++++|+||+|+++++.++.+.++++....++|+||||+|+|.+..+.+++..+++..++|+|||+|+++
T Consensus         8 ~~~~~~~~~~~~~~~~~icv~i~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~plI~T~R~~~   87 (529)
T PLN02520          8 ASDDLQGSGGVRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPLPTLVTYRPKW   87 (529)
T ss_pred             hhhhhhcccccccCCCEEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCCcEEEEeccHH
Confidence            45555689999999999999999999999999998887779999999999998766556677777777899999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC
Q 011136           89 EGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD  168 (493)
Q Consensus        89 eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaD  168 (493)
                      |||.++.++++|+++|+.+++.++||||||++..++..+.+...+.+++|||+|||||++||+.+++.+++++|+++|||
T Consensus        88 eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~~el~~~~~~~~~~gaD  167 (529)
T PLN02520         88 EGGQYEGDENKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQATGAD  167 (529)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecCCCCCCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999988766666666678999999999999999999999999999999999


Q ss_pred             EEEEEeecCCHhHHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhhccc
Q 011136          169 IVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ  248 (493)
Q Consensus       169 IvKia~~a~s~~D~~~l~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~~~~  248 (493)
                      |+|||+||++.+|++++++++.+.+.|+|+||||+.|++||+++++|||++||++++.+.++||||++++++++++++.+
T Consensus       168 i~Kia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~GS~lTy~~~~~~~~sAPGQ~~~~~l~~~~~~~~  247 (529)
T PLN02520        168 IVKIATTALDITDVARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQ  247 (529)
T ss_pred             EEEEecCCCCHHHHHHHHHHHhhcCCCEEEEecCCCCchheecccccCCceeeeecCcccccCCCCCCHHHHHHHhhhhc
Confidence            99999999999999999998777789999999999999999999999999999999865579999999999999999999


Q ss_pred             cCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHH
Q 011136          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTV  328 (493)
Q Consensus       249 ~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~  328 (493)
                      +.+++++|+|+|+||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|.|+|||||||+++++++|++|+.
T Consensus       248 ~~~~t~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~~~~~  327 (529)
T PLN02520        248 IGPDTKVYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDALKCCDEVDPI  327 (529)
T ss_pred             ccCCceEEEEEcCCcccccCHHHHHHHHHHCCCCcEEEEeehhhHHHHHHHHhhCCCCEEEECcCCHHHHHHHhccCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEE
Q 011136          329 AKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV  408 (493)
Q Consensus       329 A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~  408 (493)
                      |+.+||||||+++.++|+|+||||||.||+.+|++.+... +..+..+.++++|+++|+|+||+|++++++|++.|++|+
T Consensus       328 A~~iGAVNTvv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~-~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~  406 (529)
T PLN02520        328 AKSIGAINTIIRRPSDGKLVGYNTDYIGAISAIEDGLRAS-GSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV  406 (529)
T ss_pred             HHHhCCceEEEEeCCCCEEEEEcccHHHHHHHHHhhhccc-ccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE
Confidence            9999999999985227999999999999999998643110 000001245778999999999999999999999999999


Q ss_pred             EEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          409 IANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       409 v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++||+.++++++++.+....         .-+.++.+.++.+.+|++|+||+||.|+.-..++..  ..+-+..+|+|-
T Consensus       407 i~nR~~e~a~~la~~l~~~~---------~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~--~~l~~~~~v~D~  474 (529)
T PLN02520        407 IANRTYERAKELADAVGGQA---------LTLADLENFHPEEGMILANTTSVGMQPNVDETPISK--HALKHYSLVFDA  474 (529)
T ss_pred             EEcCCHHHHHHHHHHhCCce---------eeHhHhhhhccccCeEEEecccCCCCCCCCCCcccH--hhCCCCCEEEEe
Confidence            99999999999998764211         111222233445678999999999987543223222  223456778774

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=100.00  E-value=2.4e-88  Score=724.53  Aligned_cols=401  Identities=28%  Similarity=0.410  Sum_probs=356.4

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (493)
                      |||||+++++.+|++++++.+. .++|+||||+|+|++.++.+ +..+++..+.|++ |+|+++     ++++++|++++
T Consensus         1 ~icv~i~~~~~~e~~~~~~~~~-~~~D~vE~R~D~~~~~~~~~-~~~l~~~~~~pil-T~R~~~-----~~~~~~~~~~l   72 (477)
T PRK09310          1 MLCATISGPSFLEAKQQILRSL-KLVDCIELRVDLLLSLSDLE-LKKLIELAPIPIL-TWKKHE-----SCSQAAWIDKM   72 (477)
T ss_pred             CEEEEecCCCHHHHHHHHHHhc-ccCCEEEEEehhhccCCHHH-HHHHHhcCCCceE-EeccCc-----cCCHHHHHHHH
Confidence            6999999999999999999875 67999999999998765443 6777664456766 999976     45789999999


Q ss_pred             HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHhHHHH
Q 011136          105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVAR  184 (493)
Q Consensus       105 ~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~~D~~~  184 (493)
                      +.+++++|||||||++.+++.++++..+ ++++|||+|||||+    .+++.+++++|+++||||+|||+||++.+|+++
T Consensus        73 ~~~~~~~~d~vDiEl~~~~~~~~~l~~~-~~~~kvI~S~Hdf~----~~~l~~~~~~~~~~gaDi~Kia~~a~~~~D~l~  147 (477)
T PRK09310         73 QSLAKLNPNYLDIDKDFPKEALIRIRKL-HPKIKIILSYHTSE----HEDIIQLYNEMLASAADYYKIAVSSSSSTDLLN  147 (477)
T ss_pred             HHHHHhCCCEEEEEecCCHHHHHHHHHh-CCCCEEEEEcCCCC----cchHHHHHHHHHHcCCCEEEEeeCCCCHHHHHH
Confidence            9999999999999999998888888654 46999999999994    257999999999999999999999999999999


Q ss_pred             HHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhhccccCCCceEEEeecCCcc
Q 011136          185 VFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVG  264 (493)
Q Consensus       185 l~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~~~~~~~~~~~~~viG~pi~  264 (493)
                      +++++.....|+|+|+||+.|++||+++++|||++||++...+.++||||+++++++ .|++.+++++|++|||+|+||+
T Consensus       148 ll~~~~~~~~p~i~i~MG~~G~~SRil~~~~gS~~Tfa~~~~~~~~APGQi~~~~l~-~~~~~~~~~~t~~~~liG~pi~  226 (477)
T PRK09310        148 IIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPVAPGQLSLEHLL-FYNYANLSAQSPIYGLIGDPVD  226 (477)
T ss_pred             HHHHHhhCCCCEEEEEeCCCchHHhhcchhhcCccccccccCccccCCCCcCHHHHH-hcchhccCCCceEEEEECCCcc
Confidence            999988778899999999999999999999999999999876545799999999998 5788899889999999999999


Q ss_pred             ccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec
Q 011136          265 HSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ  342 (493)
Q Consensus       265 hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~  342 (493)
                      ||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|.|+|||||||++|++++|++|+.|+.+||||||+++ 
T Consensus       227 hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~~iGAVNTv~~~-  305 (477)
T PRK09310        227 RSISHLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVFR-  305 (477)
T ss_pred             cccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHhccCCHHHHHhCcceEEEee-
Confidence            99999999999999999999999988  479999999999999999999999999999999999999999999999987 


Q ss_pred             cCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          343 SDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       343 ~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                       +|+|+||||||.||+.+|++.           +.++++++++|+|+||+|++++++|.+.|++|+++||+.++++++++
T Consensus       306 -~g~l~G~NTD~~G~~~~l~~~-----------~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~  373 (477)
T PRK09310        306 -NGKIEGYNTDGEGLFSLLKQK-----------NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALAS  373 (477)
T ss_pred             -CCEEEEEecCHHHHHHHHHhc-----------CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence             999999999999999999753           14567899999999999999999999999999999999999999988


Q ss_pred             HhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCc
Q 011136          423 LMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNH  463 (493)
Q Consensus       423 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~  463 (493)
                      .++....+         +.++. .. .+.++++|+||.|++
T Consensus       374 ~~~~~~~~---------~~~~~-~l-~~~DiVInatP~g~~  403 (477)
T PRK09310        374 RCQGKAFP---------LESLP-EL-HRIDIIINCLPPSVT  403 (477)
T ss_pred             Hhccceec---------hhHhc-cc-CCCCEEEEcCCCCCc
Confidence            65422111         01111 12 467899999999996

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=1.2e-52  Score=415.26  Aligned_cols=235  Identities=28%  Similarity=0.466  Sum_probs=211.5

Q ss_pred             cccccccCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch----hHHHHHHhhC-CCcEEEEecc
Q 011136           12 SKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR----ENIKTLIKES-PVPTLFTYRP   86 (493)
Q Consensus        12 ~~~~~~~~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~----~~l~~l~~~~-~~PiI~T~R~   86 (493)
                      +|+++-.+..++|+||+||.+++.+|++++++++...++|+||||+|+|.++++.    +.+..+++.. ++|+|||+|+
T Consensus         4 ~~~~~~~~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~   83 (253)
T PRK02412          4 VTVKNLVIGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRT   83 (253)
T ss_pred             eEEeceEeCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            3678888999999999999999999999999988778999999999999875432    2344455543 6899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHH
Q 011136           87 IWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA  164 (493)
Q Consensus        87 ~~eGG~~~~~~~~~~~ll~~~l~~~-~dyIDIEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~  164 (493)
                      ++|||.++.++++|+++|+.+++++ |||||||+..+++.++++.. ++++++|||+|||+|+.||+.+++.+++++|++
T Consensus        84 ~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~  163 (253)
T PRK02412         84 AKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLRKMES  163 (253)
T ss_pred             hhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999 99999999998888887764 467899999999999999999999999999999


Q ss_pred             cCCCEEEEEeecCCHhHHHHHHHHhcc-----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHh
Q 011136          165 SGADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD  239 (493)
Q Consensus       165 ~gaDIvKia~~a~s~~D~~~l~~~~~~-----~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~  239 (493)
                      +||||+|+|+||++.+|+++++++..+     .+.|+|+|+||+.|++||+++++|||++||++++++  +||||+++++
T Consensus       164 ~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~SRil~~~~GS~~ty~~~~~~--sAPGQ~~~~e  241 (253)
T PRK02412        164 LGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKA--SAPGQISVED  241 (253)
T ss_pred             hCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHHHcchhhhCCcceecCCCCC--CCCCCCCHHH
Confidence            999999999999999999999998643     468999999999999999999999999999999874  9999999999


Q ss_pred             HHHHhhccc
Q 011136          240 LLDLYNFRQ  248 (493)
Q Consensus       240 l~~~~~~~~  248 (493)
                      ++++++...
T Consensus       242 l~~i~~~l~  250 (253)
T PRK02412        242 LRRILEILH  250 (253)
T ss_pred             HHHHHHHhc
Confidence            999998543

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=3e-51  Score=408.38  Aligned_cols=220  Identities=32%  Similarity=0.452  Sum_probs=184.7

Q ss_pred             cCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhc
Q 011136          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (493)
Q Consensus       249 ~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  326 (493)
                      ++.++++|+|||+||+||+||.|||++|+++|+++.|.+|+++  +|+++++.++.+++.|+|||||||+++++++|++|
T Consensus         2 ~~~~t~~~~viG~Pi~HS~SP~~Hn~~~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~   81 (283)
T COG0169           2 MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELS   81 (283)
T ss_pred             CCCCceEEEEEcCCcccCcCHHHHHHHHHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCC
Confidence            4567899999999999999999999999999999999999994  99999999999999999999999999999999999


Q ss_pred             HHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-
Q 011136          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-  405 (493)
Q Consensus       327 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-  405 (493)
                      +.|+.+||||||++++ +|+|+||||||+||..+|++...         ....++++++|+||||||||++++|++.|+ 
T Consensus        82 ~~A~~iGAVNTl~~~~-~g~l~G~NTD~~G~~~~L~~~~~---------~~~~~~~~vlilGAGGAarAv~~aL~~~g~~  151 (283)
T COG0169          82 PRARLIGAVNTLVRED-DGKLRGYNTDGIGFLRALKEFGL---------PVDVTGKRVLILGAGGAARAVAFALAEAGAK  151 (283)
T ss_pred             HHHHHhCCceEEEEcc-CCEEEEEcCCHHHHHHHHHhcCC---------CcccCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence            9999999999999982 49999999999999999987421         144568999999999999999999999998 


Q ss_pred             eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEee
Q 011136          406 RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVM  485 (493)
Q Consensus       406 ~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~  485 (493)
                      +|+|+|||.+|+++|++.+.....      .+......+.....+++|+||+||+||.+..-.+...  ...+-++.+|+
T Consensus       152 ~i~V~NRt~~ra~~La~~~~~~~~------~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~  223 (283)
T COG0169         152 RITVVNRTRERAEELADLFGELGA------AVEAAALADLEGLEEADLLINATPVGMAGPEGDSPVP--AELLPKGAIVY  223 (283)
T ss_pred             EEEEEeCCHHHHHHHHHHhhhccc------ccccccccccccccccCEEEECCCCCCCCCCCCCCCc--HHhcCcCCEEE
Confidence            999999999999999998885431      0111011011111158999999999999875222233  44556888888


Q ss_pred             e
Q 011136          486 E  486 (493)
Q Consensus       486 ~  486 (493)
                      |
T Consensus       224 D  224 (283)
T COG0169         224 D  224 (283)
T ss_pred             E
Confidence            8

>TIGR01093 aroD 3-dehydroquinate dehydratase, type I

Probab=100.00  E-value=7.9e-51  Score=396.78  Aligned_cols=217  Identities=37%  Similarity=0.608  Sum_probs=192.6

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHH----HHHHh-hCCCcEEEEeccCCCCCCCCCCHHH
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENI----KTLIK-ESPVPTLFTYRPIWEGGQYDGDENE   99 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l----~~l~~-~~~~PiI~T~R~~~eGG~~~~~~~~   99 (493)
                      +||||+++++++++..+++++ ..|+|+||||+|+|.+..+.+.+    +.++. ..++|+|||+|+++|||.++.++++
T Consensus         1 ~i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~   79 (228)
T TIGR01093         1 KIFVPLTAPDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEE   79 (228)
T ss_pred             CEEEEccCCCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHH
Confidence            589999999999999999987 78999999999999765432222    22221 1478999999999999999999999


Q ss_pred             HHHHHHHH-HHhCCcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Q 011136          100 RVDVLRLA-MELGADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL  177 (493)
Q Consensus       100 ~~~ll~~~-l~~~~dyIDIEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~  177 (493)
                      |+++++++ .+.+|||||||+..+++..+++.. ++++++|||+|||+|++||+.+++.+++++|+++||||+|+|+||+
T Consensus        80 ~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~  159 (228)
T TIGR01093        80 YLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMAN  159 (228)
T ss_pred             HHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccC
Confidence            99999998 577799999999999888887764 4578999999999999999999999999999999999999999999


Q ss_pred             CHhHHHHHHHHhcc----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHh
Q 011136          178 DITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY  244 (493)
Q Consensus       178 s~~D~~~l~~~~~~----~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~  244 (493)
                      +.+|+++++++..+    .++|+|+|+||+.|++||++|++|||++||++++.  ++||||++++++++++
T Consensus       160 ~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~--~sApGQ~~~~~l~~~~  228 (228)
T TIGR01093       160 SKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGK--ASAPGQISVDDLRELL  228 (228)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhhccccccccceeccCCC--CCCCCCcCHHHHHhhC
Confidence            99999999998754    25799999999999999999999999999999976  4999999999999864

Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4

Probab=100.00  E-value=1.1e-50  Score=394.76  Aligned_cols=217  Identities=39%  Similarity=0.645  Sum_probs=184.5

Q ss_pred             EEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc---hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 011136           27 CVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP---RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDV  103 (493)
Q Consensus        27 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (493)
                      ||||+++|.++++++++++...++|+||||+|+|.+.+.   .+.++.+++..++|+|||+|+++|||.+..++++|+++
T Consensus         1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~l   80 (224)
T PF01487_consen    1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLEL   80 (224)
T ss_dssp             EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHH
T ss_pred             CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHH
Confidence            999999999999999999866699999999999985322   46788888888999999999999999999999999999


Q ss_pred             HHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHhHHH
Q 011136          104 LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVA  183 (493)
Q Consensus       104 l~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~~D~~  183 (493)
                      |+.+++.||||||||++..++........+.+++|||+|||+|+.||+++++.+++++|.++||||+|+|+++++.+|++
T Consensus        81 l~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~  160 (224)
T PF01487_consen   81 LERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVL  160 (224)
T ss_dssp             HHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHH
T ss_pred             HHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHH
Confidence            99999999999999999555444333333478999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccC----CCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136          184 RVFQITVHS----QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (493)
Q Consensus       184 ~l~~~~~~~----~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~  245 (493)
                      ++++++.+.    +.|+|+|+||+.|++||+++++|||++||+..++  ++||||+++++++++|+
T Consensus       161 ~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~~t~~~~~~--~sApGQl~~~~l~~~~~  224 (224)
T PF01487_consen  161 RLLRFTKEFREEPDIPVIAISMGELGRISRILNPIFGSVLTFASAGE--ASAPGQLTLEELREILH  224 (224)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCHHHHTBSEEEEBSSS---SSTT-EBHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCcEEEEEcCCCchhHHHHHhhhcCCcccCCCCC--CCCCCCCcHHHHHHHhC
Confidence            999986653    6899999999999999999999999999997765  59999999999999875

2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....

>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-49  Score=382.55  Aligned_cols=222  Identities=32%  Similarity=0.537  Sum_probs=198.8

Q ss_pred             CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC-CchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHH
Q 011136           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF-NPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENER  100 (493)
Q Consensus        23 ~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~  100 (493)
                      .|+||+|+.+.+.+++..+++..+..++|++|||+|+|... +..+....+++. ...|+|||+|+.+|||.|+.++++|
T Consensus         1 ~~~i~~~v~~~~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EGG~~~~~~~~~   80 (231)
T COG0710           1 MPKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKEGGEFPGSEEEY   80 (231)
T ss_pred             CCEEEEEeecCCHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhhcCCCCCCHHHH
Confidence            48999999999999999999999899999999999999821 113344455554 3669999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 011136          101 VDVLRLAMELG-ADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI  179 (493)
Q Consensus       101 ~~ll~~~l~~~-~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~  179 (493)
                      ++++..+++.+ |+|||||+..+.+..+++... .++.++|+|||||++||+++++.+++.+|.++|+||+|+|+||++.
T Consensus        81 i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~-~~~~~vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~  159 (231)
T COG0710          81 IELLKKLAELNGPDYIDIELSSPEDDVKEIIKF-AKKHGVIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSK  159 (231)
T ss_pred             HHHHHHHHhhcCCCEEEEEccCcchhHHHHHhc-cccCCEEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCH
Confidence            99999999986 999999999998877777653 2344499999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcc---CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhhcc
Q 011136          180 TDVARVFQITVH---SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR  247 (493)
Q Consensus       180 ~D~~~l~~~~~~---~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~~~  247 (493)
                      +|++++++++..   ...|+|+||||+.|++||+++++|||++||+++.++  +||||++++++++++...
T Consensus       160 ~DvL~ll~~~~~~~~~~~p~i~i~MG~~G~~SRv~~~~~GS~~tya~~~~~--sAPGQi~v~~l~~~~~~l  228 (231)
T COG0710         160 EDVLDLLEATREFKEAEKPVITISMGKTGKISRVAGPVFGSPITYASLDKP--SAPGQISVDELRKILTLL  228 (231)
T ss_pred             HHHHHHHHHHHhccccCCCEEEEecCCCCchhhhhHhhhCCceeEeecCCC--CCCCCCCHHHHHHHHHHh
Confidence            999999999775   689999999999999999999999999999999984  999999999999988643

>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase

Probab=100.00  E-value=1.2e-48  Score=380.81  Aligned_cols=215  Identities=37%  Similarity=0.606  Sum_probs=192.6

Q ss_pred             EEEEeecCC-CHHHHHHHHHhhhhcCCCEEEEEecCCCCCC---chhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 011136           25 LICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFN---PRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER  100 (493)
Q Consensus        25 ~Icv~l~~~-~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~---~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~  100 (493)
                      +||+||.++ +.++....++...  |+|+||||+|+|.+..   ..+.++.+++..+.|+|||+|+++|||.+..++++|
T Consensus         1 ~i~~~i~~~~~~~e~~~~~~~~~--~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~   78 (225)
T cd00502           1 KICVPLTGPDLLEEALSLLELLL--GADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEY   78 (225)
T ss_pred             CEEEEecCCCCHHHHHHHHHHhc--CCCEEEEEEeeccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHH
Confidence            589999999 9999988877643  8999999999998642   245677888777799999999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 011136          101 VDVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI  179 (493)
Q Consensus       101 ~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~  179 (493)
                      +++++.++++||||||||++.  +..+++. ..+++++|||+|||+|++||+.+++.+++++|.++||||+|+|++|++.
T Consensus        79 ~~ll~~~~~~~~d~vDiEl~~--~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~  156 (225)
T cd00502          79 LELLEEALKLGPDYVDIELDS--ALLEELINSRKKGNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSI  156 (225)
T ss_pred             HHHHHHHHHHCCCEEEEEecc--hHHHHHHHHHHhCCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence            999999999999999999987  3344444 3457899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhccC----CCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136          180 TDVARVFQITVHS----QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (493)
Q Consensus       180 ~D~~~l~~~~~~~----~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~  245 (493)
                      +|+++++++....    +.|+|+|+||+.|++||++++.|||++||+++++  ++||||+++++++++++
T Consensus       157 ~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~--~sApGQ~~~~~l~~~~~  224 (225)
T cd00502         157 EDNLRLLKFTRQVKNLYDIPLIAINMGELGKLSRILSPVFGSPLTYASLPE--PSAPGQLSVEELKQALS  224 (225)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEcCCCCchhhccccccCCcccccCCCC--CCCCCCcCHHHHHHHHh
Confidence            9999999986543    4699999999999999999999999999999987  49999999999999875

) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=100.00  E-value=4.4e-49  Score=395.32  Aligned_cols=215  Identities=23%  Similarity=0.288  Sum_probs=175.9

Q ss_pred             CceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc-------ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhh
Q 011136          252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDE  324 (493)
Q Consensus       252 ~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~-------~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~  324 (493)
                      ++++|||||+||+||+||.|||++|+++|+|+.|.++++       ++|+++++.++.++|.|+|||||||+++++++|+
T Consensus         3 ~~~~~gliG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~   82 (283)
T PRK14027          3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE   82 (283)
T ss_pred             CceEEEEECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhh
Confidence            578999999999999999999999999999999999995       4799999999989999999999999999999999


Q ss_pred             hcHHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCC
Q 011136          325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG  404 (493)
Q Consensus       325 ~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g  404 (493)
                      +++.|+.+||||||+++. +|+|+||||||.||+++|++..           .+.++|+++|+||||+|||++++|.++|
T Consensus        83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~Gf~~~L~~~~-----------~~~~~k~vlilGaGGaarAi~~aL~~~g  150 (283)
T PRK14027         83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEGL-----------PNAKLDSVVQVGAGGVGNAVAYALVTHG  150 (283)
T ss_pred             CCHHHHHhCCceEEEECC-CCcEEEEcCCHHHHHHHHHhcC-----------cCcCCCeEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999998742 8999999999999999997532           2456899999999999999999999999


Q ss_pred             C-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecc--cccCCceEEEEeccccCCchhhHhhhhhHHHHhhccc
Q 011136          405 A-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILL--FTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNS  481 (493)
Q Consensus       405 ~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~--~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~  481 (493)
                      + +|+|+|||.+|+++|++.+....-.    ..+.+. +..  ..-..+++|++|+||+||+++.- .++.  +..+-++
T Consensus       151 ~~~i~i~nR~~~ka~~La~~~~~~~~~----~~~~~~-~~~~~~~~~~~~divINaTp~Gm~~~~~-~~~~--~~~l~~~  222 (283)
T PRK14027        151 VQKLQVADLDTSRAQALADVINNAVGR----EAVVGV-DARGIEDVIAAADGVVNATPMGMPAHPG-TAFD--VSCLTKD  222 (283)
T ss_pred             CCEEEEEcCCHHHHHHHHHHHhhccCc----ceEEec-CHhHHHHHHhhcCEEEEcCCCCCCCCCC-CCCC--HHHcCCC
Confidence            9 9999999999999999987532210    011111 110  11124679999999999986421 1222  2223356


Q ss_pred             eEeee
Q 011136          482 YVVME  486 (493)
Q Consensus       482 ~~~~~  486 (493)
                      .+|.|
T Consensus       223 ~~v~D  227 (283)
T PRK14027        223 HWVGD  227 (283)
T ss_pred             cEEEE
Confidence            67776

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=100.00  E-value=5.2e-49  Score=395.88  Aligned_cols=198  Identities=28%  Similarity=0.413  Sum_probs=170.2

Q ss_pred             cCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhc
Q 011136          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (493)
Q Consensus       249 ~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  326 (493)
                      ++.+|++|+|+|+||+||+||.|||++|+++|+|+.|.++++  ++|+++++.++..+|.|+|||||||++|++++|++|
T Consensus         3 ~~~~t~~~gliG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~   82 (288)
T PRK12749          3 VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELT   82 (288)
T ss_pred             cCCCceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCC
Confidence            346788999999999999999999999999999999999998  479999999988899999999999999999999999


Q ss_pred             HHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-
Q 011136          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-  405 (493)
Q Consensus       327 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-  405 (493)
                      +.|+.+||||||+++  +|+|+||||||.||+.+|++.           +.++++|+++||||||+|||++++|+..|+ 
T Consensus        83 ~~A~~iGAVNTv~~~--~g~l~G~NTD~~Gf~~~l~~~-----------~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~  149 (288)
T PRK12749         83 PAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-----------GFDIKGKTMVLLGAGGASTAIGAQGAIEGLK  149 (288)
T ss_pred             HHHHHhCceeEEEcc--CCEEEEEecCHHHHHHHHHhc-----------CCCcCCCEEEEECCcHHHHHHHHHHHHCCCC
Confidence            999999999999876  899999999999999999752           145678999999999999999999999998 


Q ss_pred             eEEEEeCC---hHHHHHHHHHhhhhhhcccccceEEEEeeccc--cc---CCceEEEEeccccCCchh
Q 011136          406 RVVIANRT---YGESLTFLRLMSWLLLNTLLFDSVIVIRILLF--TW---HLKFFIAANIIHLGNHLE  465 (493)
Q Consensus       406 ~i~v~~R~---~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~--~~---~~~~~i~~n~tplG~~~~  465 (493)
                      +|+|+||+   .+|+++|++.++.....     .+.+ .++++  .+   ..+++|++|+||+||.|+
T Consensus       150 ~i~i~nRt~~~~~ka~~la~~~~~~~~~-----~~~~-~~~~~~~~l~~~~~~aDivINaTp~Gm~~~  211 (288)
T PRK12749        150 EIKLFNRRDEFFDKALAFAQRVNENTDC-----VVTV-TDLADQQAFAEALASADILTNGTKVGMKPL  211 (288)
T ss_pred             EEEEEeCCccHHHHHHHHHHHhhhccCc-----eEEE-echhhhhhhhhhcccCCEEEECCCCCCCCC
Confidence            99999999   46999999987643210     1111 11111  01   135799999999999874

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=2.4e-48  Score=390.78  Aligned_cols=216  Identities=23%  Similarity=0.257  Sum_probs=178.8

Q ss_pred             CCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc-------ccHHHHHHHhcCCCCCeEEEccCchHHHhhhh
Q 011136          250 GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCC  322 (493)
Q Consensus       250 ~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~-------~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~  322 (493)
                      +..+++|+|+|+||+||+||.|||++|+++|+|+.|.++++       ++|+++++.++..+|.|+|||||||+++++++
T Consensus         2 ~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~   81 (284)
T PRK12549          2 SRPSFLAGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHL   81 (284)
T ss_pred             CccceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHh
Confidence            34578999999999999999999999999999999999986       37999999998899999999999999999999


Q ss_pred             hhhcHHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHh
Q 011136          323 DEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA  402 (493)
Q Consensus       323 d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~  402 (493)
                      |++|+.|+.+||||||+++  +|+|+||||||.||+.+|++..           ..+++++|+|||+||+||+++++|..
T Consensus        82 D~~~~~A~~iGAvNTv~~~--~g~l~G~NTD~~G~~~~l~~~~-----------~~~~~k~vlIlGaGGaaraia~aL~~  148 (284)
T PRK12549         82 DELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGL-----------PDASLERVVQLGAGGAGAAVAHALLT  148 (284)
T ss_pred             ccCCHHHHHhCCceEEEec--CCEEEEEcCCHHHHHHHHHhhc-----------cCccCCEEEEECCcHHHHHHHHHHHH
Confidence            9999999999999999887  8999999999999999997532           24568999999999999999999999


Q ss_pred             CCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccc
Q 011136          403 KGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNS  481 (493)
Q Consensus       403 ~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~  481 (493)
                      .|+ +|+|+||+.+|+++|++.+...+..    ..+..+.++.+. ..+.+|++|+||+||+++.- .++..  ..+-++
T Consensus       149 ~G~~~I~I~nR~~~ka~~la~~l~~~~~~----~~~~~~~~~~~~-~~~aDiVInaTp~Gm~~~~~-~~~~~--~~l~~~  220 (284)
T PRK12549        149 LGVERLTIFDVDPARAAALADELNARFPA----ARATAGSDLAAA-LAAADGLVHATPTGMAKHPG-LPLPA--ELLRPG  220 (284)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhhCCC----eEEEeccchHhh-hCCCCEEEECCcCCCCCCCC-CCCCH--HHcCCC
Confidence            999 9999999999999999987643311    112222222222 25689999999999987531 12222  223456


Q ss_pred             eEeee
Q 011136          482 YVVME  486 (493)
Q Consensus       482 ~~~~~  486 (493)
                      .+|+|
T Consensus       221 ~~v~D  225 (284)
T PRK12549        221 LWVAD  225 (284)
T ss_pred             cEEEE
Confidence            67776

>PRK13575 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=3.3e-47  Score=372.26  Aligned_cols=220  Identities=25%  Similarity=0.387  Sum_probs=183.5

Q ss_pred             CcEEEEeecCCC-HHHH-HHHHHhhhhcCCCEEEEEecCCCCCCch---hHHHHHHhh-CCCcEEEEeccCCCCCCCCCC
Q 011136           23 PTLICVPIMGES-VDKM-VVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKE-SPVPTLFTYRPIWEGGQYDGD   96 (493)
Q Consensus        23 ~~~Icv~l~~~~-~~e~-~~~~~~~~~~~aD~vElRlD~l~~~~~~---~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~   96 (493)
                      .+.||+++.... +++. ...++.. ..++|+||||+|+|.+.+..   +.+..+++. .+.|+|||+|+++|||.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vElRlD~l~~~~~~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~~~~   81 (238)
T PRK13575          3 HVEVAATIAPQLSIEETLIQKINHR-IDAIDIIELRIDQWENVTVDQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQFT   81 (238)
T ss_pred             ceeEeeeeccccccchhHHHHHHhc-CCCCCEEEEEeccccCCCHHHHHHHHHHHHhhcCCCCEEEEeCChhhCCCCCCC
Confidence            456677777663 6665 4444443 56899999999999875432   123333332 468999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccc--ccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136           97 ENERVDVLRLAMELG-ADYIDVELQV--AREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus        97 ~~~~~~ll~~~l~~~-~dyIDIEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      +++|.++++.+...+ +||||||++.  +.+..+++. ..++.+++||+|||||++||+.+++.+++++|+++||||+|+
T Consensus        82 ~~~~~~ll~~~~~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~~~~l~~~~~~m~~~gaDi~Ki  161 (238)
T PRK13575         82 NDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFIFFKMQKFNPEYVKL  161 (238)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence            999999998887765 8999999986  344455554 345679999999999999999999999999999999999999


Q ss_pred             EeecCCHhHHHHHHHHhcc----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136          173 ATTALDITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (493)
Q Consensus       173 a~~a~s~~D~~~l~~~~~~----~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~  245 (493)
                      |+||++.+|+++|++++.+    .+.|+|+|+||+.|++||+++++|||++||++++++  +||||+++++++++++
T Consensus       162 Av~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~~G~iSRi~~~~~GS~~Tya~l~~~--sAPGQi~v~~l~~i~~  236 (238)
T PRK13575        162 AVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALSYGCIGEP--QAPGQIHVTDLKAQVT  236 (238)
T ss_pred             EecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCCCCchhhcchhhhCCceEecCCCCC--CCCCCCCHHHHHHHHH
Confidence            9999999999999998643    367999999999999999999999999999999874  9999999999999876

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=100.00  E-value=3.4e-47  Score=383.58  Aligned_cols=220  Identities=28%  Similarity=0.345  Sum_probs=177.7

Q ss_pred             cCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhc
Q 011136          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (493)
Q Consensus       249 ~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  326 (493)
                      ++.++++|+|||+||+||+||.|||++|+++|+|+.|.++++  ++|+++++.++..+|+|+|||||||++|++++|++|
T Consensus         5 ~~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~   84 (289)
T PRK12548          5 ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELS   84 (289)
T ss_pred             cCCceeEEEEEcCCcccccCHHHHHHHHHHcCCCEEEEEEecCHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCC
Confidence            456778999999999999999999999999999999999998  479999999988999999999999999999999999


Q ss_pred             HHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-
Q 011136          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-  405 (493)
Q Consensus       327 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-  405 (493)
                      +.|+.+||||||+++  +|+|+||||||.||+.+|++..           ..+++|+++|+||||+|||++++|++.|+ 
T Consensus        85 ~~A~~iGavNTi~~~--~g~l~G~NTD~~G~~~~l~~~~-----------~~~~~k~vlI~GAGGagrAia~~La~~G~~  151 (289)
T PRK12548         85 PAARIIGAVNTIVND--DGKLTGHITDGLGFVRNLREHG-----------VDVKGKKLTVIGAGGAATAIQVQCALDGAK  151 (289)
T ss_pred             HHHHHhCceeEEEeE--CCEEEEEecCHHHHHHHHHhcC-----------CCcCCCEEEEECCcHHHHHHHHHHHHCCCC
Confidence            999999999999887  8999999999999999997532           34678999999999999999999999999 


Q ss_pred             eEEEEeCCh---HHHHHHHHHhhhhhhcccccceEEEEeeccc--c---cCCceEEEEeccccCCchhhHhhhhhHHHHh
Q 011136          406 RVVIANRTY---GESLTFLRLMSWLLLNTLLFDSVIVIRILLF--T---WHLKFFIAANIIHLGNHLEWVTAAFNLFFYL  477 (493)
Q Consensus       406 ~i~v~~R~~---~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~--~---~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~  477 (493)
                      +|+|+||+.   ++++++++.+......    -.+.. .++.+  .   .-.+.+|++|+||+||+|+.-..+... +..
T Consensus       152 ~V~I~~R~~~~~~~a~~l~~~l~~~~~~----~~~~~-~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~-~~~  225 (289)
T PRK12548        152 EITIFNIKDDFYERAEQTAEKIKQEVPE----CIVNV-YDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKD-TSV  225 (289)
T ss_pred             EEEEEeCCchHHHHHHHHHHHHhhcCCC----ceeEE-echhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCc-HHh
Confidence            799999997   8999998877432210    01111 11110  1   113468999999999987532222201 122


Q ss_pred             hccceEeeec
Q 011136          478 TCNSYVVMEK  487 (493)
Q Consensus       478 ~~~~~~~~~~  487 (493)
                      +-++.+|.|-
T Consensus       226 l~~~~~v~D~  235 (289)
T PRK12548        226 FRKDLVVADT  235 (289)
T ss_pred             cCCCCEEEEe
Confidence            2356677773

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=6.3e-47  Score=377.50  Aligned_cols=208  Identities=22%  Similarity=0.296  Sum_probs=173.6

Q ss_pred             ccCCCceE-EEeecCCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhc
Q 011136          248 QMGPDTKV-FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (493)
Q Consensus       248 ~~~~~~~~-~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  326 (493)
                      +++++|++ |+|+|+|  ||+||.|||++|+++|+|+.|.+++.++++++++.++..+|.|+|||||||++|++++|++|
T Consensus         4 ~~~~~~~~~~gliG~P--~~~Sp~ihn~~f~~~gl~~~Y~~~~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~   81 (272)
T PRK12550          4 MINKDTQLCISLAARP--SNFGTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELD   81 (272)
T ss_pred             cCCCCceEEEEEEccc--hhcCHHHHHHHHHHcCCCcEEEecCHhHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCC
Confidence            45677884 9999999  77889999999999999999999998899999999998999999999999999999999999


Q ss_pred             HHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-
Q 011136          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-  405 (493)
Q Consensus       327 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-  405 (493)
                      +.|+.+||||||+++  +|+|+||||||.||+.+|++. .          .. .+++++|+||||+|||++++|.+.|+ 
T Consensus        82 ~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-~----------~~-~~~~vlilGaGGaarAi~~aL~~~g~~  147 (272)
T PRK12550         82 PSAQAIESVNTIVNT--DGHLKAYNTDYIAIAKLLASY-Q----------VP-PDLVVALRGSGGMAKAVAAALRDAGFT  147 (272)
T ss_pred             HHHHHhCCeeEEEee--CCEEEEEecCHHHHHHHHHhc-C----------CC-CCCeEEEECCcHHHHHHHHHHHHCCCC
Confidence            999999999999887  899999999999999999752 1          22 25689999999999999999999999 


Q ss_pred             eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhh--HhhhhhHHHHhhccceE
Q 011136          406 RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEW--VTAAFNLFFYLTCNSYV  483 (493)
Q Consensus       406 ~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~--~~~~~~~~~~~~~~~~~  483 (493)
                      +|+|+||+.+|+++|++.+...+.           ..+.   ..+++|+||+||+||.++.  -..++.  ...+-++.+
T Consensus       148 ~i~i~nR~~~~a~~la~~~~~~~~-----------~~~~---~~~~dlvINaTp~Gm~~~~~~~~~pi~--~~~l~~~~~  211 (272)
T PRK12550        148 DGTIVARNEKTGKALAELYGYEWR-----------PDLG---GIEADILVNVTPIGMAGGPEADKLAFP--EAEIDAASV  211 (272)
T ss_pred             EEEEEeCCHHHHHHHHHHhCCcch-----------hhcc---cccCCEEEECCccccCCCCccccCCCC--HHHcCCCCE
Confidence            899999999999999987642210           0111   1347899999999998632  111222  223345678


Q ss_pred             eeec
Q 011136          484 VMEK  487 (493)
Q Consensus       484 ~~~~  487 (493)
                      |+|-
T Consensus       212 v~D~  215 (272)
T PRK12550        212 VFDV  215 (272)
T ss_pred             EEEe
Confidence            8873

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=100.00  E-value=9.3e-47  Score=379.11  Aligned_cols=196  Identities=27%  Similarity=0.338  Sum_probs=165.2

Q ss_pred             CceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc---ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHH
Q 011136          252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV---DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTV  328 (493)
Q Consensus       252 ~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~---~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~  328 (493)
                      .++.|+|||+||+||+||.|||++|+++|+|+.|.++++   +++.++++.++ .+|.|+|||||||+++++++|++|+.
T Consensus         4 ~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~~~~l~~~~~~~~-~~~~G~nVT~P~K~~~~~~~d~~~~~   82 (282)
T TIGR01809         4 GPKKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFG-PQFGGASVTIPLKFAILRFADEHTDR   82 (282)
T ss_pred             CCeEEEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeecCCHHHHHHHHHhcC-CCCcEEEECCCCHHHHHHHhhcCCHH
Confidence            367999999999999999999999999999999999987   36888888774 49999999999999999999999999


Q ss_pred             HHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eE
Q 011136          329 AKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RV  407 (493)
Q Consensus       329 A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i  407 (493)
                      |+.+||||||+++. +|+|+||||||.||+.+|++...         ..++++++++||||||+||+++++|.++|+ +|
T Consensus        83 A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~~~---------~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i  152 (282)
T TIGR01809        83 ASLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGALANIGK---------FEPLAGFRGLVIGAGGTSRAAVYALASLGVTDI  152 (282)
T ss_pred             HHHhCceeEEEEcC-CCcEEEecCCHHHHHHHHHhhCC---------ccccCCceEEEEcCcHHHHHHHHHHHHcCCCeE
Confidence            99999999999852 89999999999999999975310         013578999999999999999999999999 99


Q ss_pred             EEEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccc--ccCCceEEEEeccccCCchh
Q 011136          408 VIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLF--TWHLKFFIAANIIHLGNHLE  465 (493)
Q Consensus       408 ~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~--~~~~~~~i~~n~tplG~~~~  465 (493)
                      +|+||+.+|+++|++.++...       .+..+...++  .-..+++|++|+||+||+.+
T Consensus       153 ~I~nRt~~ka~~La~~~~~~~-------~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~  205 (282)
T TIGR01809       153 TVINRNPDKLSRLVDLGVQVG-------VITRLEGDSGGLAIEKAAEVLVSTVPADVPAD  205 (282)
T ss_pred             EEEeCCHHHHHHHHHHhhhcC-------cceeccchhhhhhcccCCCEEEECCCCCCCCC
Confidence            999999999999999875322       1111221110  11156799999999999754

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=1.5e-46  Score=376.98  Aligned_cols=215  Identities=32%  Similarity=0.482  Sum_probs=179.1

Q ss_pred             CCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcH
Q 011136          250 GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDT  327 (493)
Q Consensus       250 ~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~  327 (493)
                      +.+++.|+|+|+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++..+|.|+|||||||+++++++|++|+
T Consensus         2 ~~~~~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~   81 (278)
T PRK00258          2 TGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELSE   81 (278)
T ss_pred             CCceeEEEEECCchhcccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCCH
Confidence            46688999999999999999999999999999999999999  5899999999888999999999999999999999999


Q ss_pred             HHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-e
Q 011136          328 VAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R  406 (493)
Q Consensus       328 ~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~  406 (493)
                      .|+.+||||||+++  +|+|+||||||.||+++|++.+.          .++.+++++|+|+||+|++++++|...|+ +
T Consensus        82 ~A~~igavNtv~~~--~g~l~G~NTD~~G~~~~l~~~~~----------~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~  149 (278)
T PRK00258         82 RARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERLG----------VDLKGKRILILGAGGAARAVILPLLDLGVAE  149 (278)
T ss_pred             HHHHhCCceEEEee--CCEEEEEcccHHHHHHHHHhccC----------CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCE
Confidence            99999999999976  89999999999999999975321          35678999999999999999999999996 9


Q ss_pred             EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136          407 VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       407 i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      |+|+||+.++++++++.+....       .+.+-.++.+.+ .+++|++|+||.||+++.-.+++..  ..+-+..+|+|
T Consensus       150 V~v~~R~~~~a~~l~~~~~~~~-------~~~~~~~~~~~~-~~~DivInaTp~g~~~~~~~~~~~~--~~l~~~~~v~D  219 (278)
T PRK00258        150 ITIVNRTVERAEELAKLFGALG-------KAELDLELQEEL-ADFDLIINATSAGMSGELPLPPLPL--SLLRPGTIVYD  219 (278)
T ss_pred             EEEEeCCHHHHHHHHHHhhhcc-------ceeecccchhcc-ccCCEEEECCcCCCCCCCCCCCCCH--HHcCCCCEEEE
Confidence            9999999999999998876321       011100111222 5689999999999987532222222  12234667776

>PRK13576 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=6.5e-46  Score=356.95  Aligned_cols=204  Identities=23%  Similarity=0.292  Sum_probs=174.0

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHH
Q 011136           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERV  101 (493)
Q Consensus        22 ~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~  101 (493)
                      ++|+||+|+++++.++++.+.+.   .++|+||||+|+|++....  +..+++....|+|||+|+++|||.+.+++++|+
T Consensus         1 ~~p~i~vpi~~~~~e~i~~~~~~---~~aD~vE~RlD~l~~~~~~--~~~~l~~~~~plI~T~R~~~EGG~~~~~~~~r~   75 (216)
T PRK13576          1 MRPLIVASLPIKKIEDLKLIGNF---LDADLIELRLDYLKDREVS--VIEFLDKYKDKLIVTLRDKAEGGINELDDELKI   75 (216)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhc---CCCCEEEEEeccccccchh--HHHHHHhcCCCEEEEeCChHHCCCCcCCHHHHH
Confidence            57999999999999999988654   4899999999999875433  233334455799999999999999999999999


Q ss_pred             HHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH-h
Q 011136          102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI-T  180 (493)
Q Consensus       102 ~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~-~  180 (493)
                      ++|+.+++.+. ++|||+....+..       ..+.++|+|||||++||+.+++.+++++|++ ||||+|+|+||++. .
T Consensus        76 ~ll~~~~~~~~-~vDiE~~~a~~~~-------~~~~~vI~S~HdF~~TP~~~eL~~~l~~m~~-gaDI~KiA~mp~~~~~  146 (216)
T PRK13576         76 SLLKELYDKQF-LYDVEASFLQKYN-------VPYDNKIVSIHYFDYLPTSEEVKEIVSKFYE-KAFSVKIAVLGLKGYK  146 (216)
T ss_pred             HHHHHHHHhCC-eEEEEcchhhhcC-------CCCCeEEEEECCCCCCcCHHHHHHHHHHHHh-cCCEEEEEeCCCCchH
Confidence            99999999985 7799997543321       1246799999999999999999999999987 99999999999985 7


Q ss_pred             HHH-HHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhhcc
Q 011136          181 DVA-RVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR  247 (493)
Q Consensus       181 D~~-~l~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~~~  247 (493)
                      |++ ++++   .  ..+|+|+||+.| +||+++++|||++||++++++  |||||+++++|++++++.
T Consensus       147 d~l~~Ll~---~--~~~i~~~MG~~G-iSRi~~~~fGS~lTy~~~~~~--sAPGQi~v~~l~~i~~~l  206 (216)
T PRK13576        147 EVLLPLLE---Y--ENVTVMPMSVNP-LERIAFSLLGSKLIYSYAIEP--TAQGQLHYKKVKQILNYL  206 (216)
T ss_pred             hHHHHHhc---c--cCccEEEcCCcc-HHHHHHHHhCCeeEEEecCCC--CCCCCccHHHHHHHHHHH
Confidence            775 5554   2  245889999999 999999999999999999974  999999999999999854

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=100.00  E-value=1.7e-44  Score=360.65  Aligned_cols=211  Identities=31%  Similarity=0.426  Sum_probs=175.8

Q ss_pred             eEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHH
Q 011136          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (493)
Q Consensus       254 ~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  331 (493)
                      ++|+|+|+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||+++++++|++++.|+.
T Consensus         1 ~~~~viG~pi~hS~SP~~hn~~~~~~g~~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~   80 (270)
T TIGR00507         1 KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKL   80 (270)
T ss_pred             CEEEEECCccccccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHH
Confidence            4799999999999999999999999999999999998  47999999999899999999999999999999999999999


Q ss_pred             hcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEe
Q 011136          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN  411 (493)
Q Consensus       332 igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~  411 (493)
                      +||||||+++  +|+|+||||||.||+++|++. .          ...++++++|+|+||+|++++++|.+.|++|+|+|
T Consensus        81 ~gavNti~~~--~g~l~g~NTD~~G~~~~l~~~-~----------~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~  147 (270)
T TIGR00507        81 AGAVNTLKLE--DGKLVGYNTDGIGLVSDLERL-I----------PLRPNQRVLIIGAGGAARAVALPLLKADCNVIIAN  147 (270)
T ss_pred             hCCceEEEee--CCEEEEEcCCHHHHHHHHHhc-C----------CCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Confidence            9999999977  899999999999999999752 1          23457899999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          412 RTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       412 R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      |+.++++++++.++...       .+... ++++....+.+|++|+||.||.++.-...+.  ....-++.+|+|-
T Consensus       148 R~~~~~~~la~~~~~~~-------~~~~~-~~~~~~~~~~DivInatp~gm~~~~~~~~~~--~~~l~~~~~v~D~  213 (270)
T TIGR00507       148 RTVSKAEELAERFQRYG-------EIQAF-SMDELPLHRVDLIINATSAGMSGNIDEPPVP--AEKLKEGMVVYDM  213 (270)
T ss_pred             CCHHHHHHHHHHHhhcC-------ceEEe-chhhhcccCccEEEECCCCCCCCCCCCCCCC--HHHcCCCCEEEEe
Confidence            99999999998875321       11111 1222212468999999999998754222221  2223467788874

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=2e-43  Score=342.75  Aligned_cols=214  Identities=20%  Similarity=0.292  Sum_probs=179.3

Q ss_pred             cccccc--ccccCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch--hHHHHHHhhCCCcEEEEe
Q 011136            9 ASGSKL--VSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR--ENIKTLIKESPVPTLFTY   84 (493)
Q Consensus         9 ~~~~~~--~~~~~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~--~~l~~l~~~~~~PiI~T~   84 (493)
                      -||-|+  .+-.+...+|+||+||++++.+|++.+++.+...++|+||||+|+|.+++..  ..+...++..+.|+|||+
T Consensus         4 ~~~~~~~v~~~~~g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~~~~~~~~~l~~~~~p~I~T~   83 (229)
T PRK01261          4 YSGDKISIGKFVIGNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHDHSIESEPEIISALNEMDIDYIFTY   83 (229)
T ss_pred             ccCCeEEEeCeEeCCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCCCChHHHHHHHHHHhhcCCCEEEEE
Confidence            356554  6889999999999999999999999999988778999999999999875432  222233344589999999


Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHH
Q 011136           85 RPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA  164 (493)
Q Consensus        85 R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~  164 (493)
                      |+.        ++   .++++.+++.++||||||++...+    + ..+..++|+|+|||    ||+.+++.+++++|.+
T Consensus        84 R~~--------~~---~~~l~~a~~~~~d~vDIEl~~~~~----~-~~~~~~~kvIvS~H----tp~~eeL~~~l~~m~~  143 (229)
T PRK01261         84 RGV--------DA---RKYYETAIDKMPPAVDLDINLIGK----L-EFRPRNTMLMVSYH----TNNSDNMPAILDIMNE  143 (229)
T ss_pred             cCC--------CH---HHHHHHHHhhCCCEEEEEcccchh----h-hhhcCCCeEEEEeC----CCCHHHHHHHHHHHHH
Confidence            952        21   478888888779999999987333    2 22467999999999    7788999999999999


Q ss_pred             cCCCEEEEEeecCCHhHHHHHHH----HhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhH
Q 011136          165 SGADIVKFATTALDITDVARVFQ----ITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL  240 (493)
Q Consensus       165 ~gaDIvKia~~a~s~~D~~~l~~----~~~~~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l  240 (493)
                      +||||+|+|+||++.+|+++++.    +....+.|+|+|+||+  ++||+++++|||++||++++++  |||||+++++|
T Consensus       144 ~gaDI~KiAvmp~~~~Dvl~~l~~~~~~~~~~~~p~i~isMG~--~iSRi~~~~fGS~lTyas~~~~--sAPGQi~v~~l  219 (229)
T PRK01261        144 KNPDYVKVACNYNDNKKFVDDLQYILMKKDEKYKPIVFIPMGR--EFLRIFSGYYVSDIVYARYDNE--TAPGQPKRDYY  219 (229)
T ss_pred             hCCCEEEEEeCCCChHHHHHHHHHHHHHHhcCCCCEEEEECCc--HHHHHHHHHHCCceEEeeCCCC--CCCCCCCHHHH
Confidence            99999999999999999887764    3334578999999999  9999999999999999999974  99999999999


Q ss_pred             HHHhhc
Q 011136          241 LDLYNF  246 (493)
Q Consensus       241 ~~~~~~  246 (493)
                      +++++.
T Consensus       220 ~~~~~~  225 (229)
T PRK01261        220 ESAFIK  225 (229)
T ss_pred             HHHHHH
Confidence            999874

>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]

Probab=99.95  E-value=1.4e-31  Score=274.41  Aligned_cols=367  Identities=16%  Similarity=0.072  Sum_probs=302.9

Q ss_pred             CCCcEEEEeccCCCCCC---CCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCH
Q 011136           76 SPVPTLFTYRPIWEGGQ---YDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSV  152 (493)
Q Consensus        76 ~~~PiI~T~R~~~eGG~---~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~  152 (493)
                      ..+|.+++.|.++|+|.   ..+...++...+...++++.+|+|.|++...++...+-+...+..+||.+.|..+.+|  
T Consensus       148 sal~~L~~~~~~we~~~~~vveG~gg~~~~~~~~~~eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rP--  225 (595)
T KOG0692|consen  148 SALKTLGLNVETWEENNRAVVEGCGGEFSIDSKSDIELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERP--  225 (595)
T ss_pred             hhHHHhccccceecCCCEEEEEcCCCeeeechhhhhhhccCccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCC--
Confidence            57899999999999887   5666666555667778899999999999888777766655555669999999999999  


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCC
Q 011136          153 EDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAP  232 (493)
Q Consensus       153 ~el~~~~~~~~~~gaDIvKia~~a~s~~D~~~l~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAP  232 (493)
                        +-.+..++++.||||.|++.+...+-|+. ....++..++|+++.-||+.+..+|++.|.++..+||..++..+-|+|
T Consensus       226 --i~~LV~~l~q~GadI~~~~~t~~~p~dv~-~~~~~~gg~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS~p  302 (595)
T KOG0692|consen  226 --IGDLVVGLKQLGADIECTLGTNCPPVDVN-ANGGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVP  302 (595)
T ss_pred             --chHHHHHHHhcCCceEEeccCCCCceeee-ccCCCcCceeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCcccccc
Confidence              55677888889999999999999999997 555677778999999999999999999999999999999997778999


Q ss_pred             CCCCHHhHHHHh--hccccCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCeEE-
Q 011136          233 GQPTIKDLLDLY--NFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS-  309 (493)
Q Consensus       233 GQ~~i~~l~~~~--~~~~~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~-  309 (493)
                      +|.....|.+.|  ++.+..++++.|++.|.|++|+.+|.+||.+|.+...++.|...-++..-.++..-...++.||+ 
T Consensus       303 yv~mt~~lme~fgvn~~~s~~~~~~y~i~g~~y~~p~~~~ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda~Fa~  382 (595)
T KOG0692|consen  303 YVEMTLKLMERFGVNVEHSTSWDRFYVIGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDAKFAE  382 (595)
T ss_pred             chhHHHHHHHHhCcCeEecCCCcceEeccCcccCCCCCceeecccccccccceeeeEecceeeeccccceecccccchHh
Confidence            999999999999  78888999999999999999999999999999999999888776554333334333456899999 


Q ss_pred             EccCchHHHhhhhhhhcHHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCccccc----CCCEEE
Q 011136          310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSAL----AGKLFV  385 (493)
Q Consensus       310 VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l----~~~~vl  385 (493)
                      |+.|||.++...+++++..+.-+||+|++.++..|+...++|+|..|-+.|+...++.+++-  ....+.    -.+...
T Consensus       383 vl~pmgc~v~qt~~svtv~gp~~ga~~~~~lr~iD~m~~m~d~~~t~svvA~~~~~~s~gdp--tti~~~as~rvket~r  460 (595)
T KOG0692|consen  383 VLEPMGCKVSQTENSVTVTGPPRGAFGMRHLRAIDVMNKMPDVAMTLSVVALFAGLRSSGDP--TTIRDVASWRVKETER  460 (595)
T ss_pred             hhccccceeeeecccccccCCCCCcccceehhhhcccccccchhHhHhHHHHhhcccCCCCC--cccccccchhHHHHHH
Confidence            99999999999999999999999999999876457889999999999999998766543210  111111    123567


Q ss_pred             EEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCc
Q 011136          386 VIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNH  463 (493)
Q Consensus       386 vlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~  463 (493)
                      |||.|+..+...+...+.+..++|.+|+ +|+-++++....             +...+...+-.+++++|+++.|..
T Consensus       461 ~ia~~~el~klg~~~~E~~dg~~v~~~~-~k~lk~ae~~g~-------------~TydDhr~am~fsvLA~~~~~~~~  524 (595)
T KOG0692|consen  461 MIAICTELRKLGATVEEGSDGYCVITPP-EKKLKLAEIDGS-------------LTYDDHRMAMAFSVLAACADVPIT  524 (595)
T ss_pred             HHHHHHHHHHhcccccccCceEEEeCCc-hHhccchhhccc-------------cccccccchhhhhHHHhccCCCcc
Confidence            8999999999998888887789999999 888888886421             233444556778889999998843

>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []

Probab=99.94  E-value=3e-27  Score=195.10  Aligned_cols=81  Identities=41%  Similarity=0.806  Sum_probs=75.0

Q ss_pred             eecCCccccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcce
Q 011136          258 IIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAV  335 (493)
Q Consensus       258 viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAv  335 (493)
                      |+|+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++..+|.|+|||||||+++++++|++++.|+.+|||
T Consensus         1 viG~pi~hS~SP~~hn~~f~~~g~~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT~P~K~~~~~~~D~~~~~A~~igAv   80 (83)
T PF08501_consen    1 VIGNPISHSLSPLIHNAAFEALGLDAVYIPFEVEPEDLEDFLDALRAPNFRGLNVTMPHKEAAIPYLDELSPSAKAIGAV   80 (83)
T ss_dssp             EEESSSTT-SHHHHHHHHHHHTTSSEEEEEEETSTTCHHHHHHHHHHTTESEEEE-TTSTTHHGGGSSEE-HHHHHHTS-
T ss_pred             CcCCCcccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHhcCCCCeeeecchHHHHHHHHhccCCHHHHHhCCc
Confidence            6999999999999999999999999999999995  99999999998999999999999999999999999999999999


Q ss_pred             eeE
Q 011136          336 NCI  338 (493)
Q Consensus       336 Nti  338 (493)
                      |||
T Consensus        81 Ntv   83 (83)
T PF08501_consen   81 NTV   83 (83)
T ss_dssp             SEE
T ss_pred             ccC
Confidence            997

Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.83  E-value=4.1e-20  Score=185.51  Aligned_cols=179  Identities=21%  Similarity=0.317  Sum_probs=143.0

Q ss_pred             EEeecCCccccccHHHHHHHHHHcCCCceeecc--cc--ccHHHHHHHhcC-CCCCeEEEccCchHHHhh--hhhhhcHH
Q 011136          256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHL--LV--DDIAKFFQTYSS-NDFAGFSCTIPHKEAAVK--CCDEVDTV  328 (493)
Q Consensus       256 ~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~--~~--~~l~~~~~~l~~-~~~~G~~VT~P~K~~v~~--~~d~~~~~  328 (493)
                      .-++|+.=+.-.-=.+|+.+|+++|++..|..+  ++  +++.+.++.+.. +++.|++||+|||+.+.+  ++|++ +.
T Consensus        38 ~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~  116 (283)
T PRK14192         38 TILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SL  116 (283)
T ss_pred             EEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CH
Confidence            445664333233347999999999999999999  55  478888888855 489999999999999999  99999 88


Q ss_pred             HHHhcceeeEEEeccCCe------EEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHH
Q 011136          329 AKSIGAVNCIIRRQSDGK------LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK  401 (493)
Q Consensus       329 A~~igAvNti~~~~~~g~------l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~  401 (493)
                      ++.++++|++ +   .|+      ++|+||| .||+..|++.           +.+++||+|+|+|+|| +||++++.|.
T Consensus       117 aKDVdg~n~~-n---~G~l~~~~~~~~p~T~-~gii~~L~~~-----------~i~l~Gk~vvViG~gg~vGkpia~~L~  180 (283)
T PRK14192        117 AKDVDGVTCL-G---FGRMAMGEAAYGSATP-AGIMRLLKAY-----------NIELAGKHAVVVGRSAILGKPMAMMLL  180 (283)
T ss_pred             HHhcCCCCcc-c---cCccccCCCcccCCcH-HHHHHHHHHc-----------CCCCCCCEEEEECCcHHHHHHHHHHHH
Confidence            9999999999 3   466      8999999 9999999863           1578899999999999 9999999999


Q ss_pred             hCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccc
Q 011136          402 AKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNS  481 (493)
Q Consensus       402 ~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~  481 (493)
                      +.|+.|+|++|   +++.|++.+                        .+++|++|||+   .|+.+...+      .-.+
T Consensus       181 ~~gatVtv~~~---~t~~L~~~~------------------------~~aDIvI~AtG---~~~~v~~~~------lk~g  224 (283)
T PRK14192        181 NANATVTICHS---RTQNLPELV------------------------KQADIIVGAVG---KPELIKKDW------IKQG  224 (283)
T ss_pred             hCCCEEEEEeC---CchhHHHHh------------------------ccCCEEEEccC---CCCcCCHHH------cCCC
Confidence            99999999998   455555543                        24579999994   444454332      2467


Q ss_pred             eEeeec
Q 011136          482 YVVMEK  487 (493)
Q Consensus       482 ~~~~~~  487 (493)
                      .+|.|-
T Consensus       225 avViDv  230 (283)
T PRK14192        225 AVVVDA  230 (283)
T ss_pred             CEEEEE
Confidence            777774

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=99.43  E-value=4.1e-13  Score=120.78  Aligned_cols=80  Identities=30%  Similarity=0.296  Sum_probs=64.1

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      .++++++++||||||+||+++++|...|+ +|+|+|||.+|+++|++.++....      .+.-+.++.+.+ .+++|++
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~------~~~~~~~~~~~~-~~~DivI   80 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNI------EAIPLEDLEEAL-QEADIVI   80 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSE------EEEEGGGHCHHH-HTESEEE
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcccc------ceeeHHHHHHHH-hhCCeEE
Confidence            36789999999999999999999999999 799999999999999999843321      122223333333 6799999


Q ss_pred             eccccCCc
Q 011136          456 NIIHLGNH  463 (493)
Q Consensus       456 n~tplG~~  463 (493)
                      |+||.|++
T Consensus        81 ~aT~~~~~   88 (135)
T PF01488_consen   81 NATPSGMP   88 (135)
T ss_dssp             E-SSTTST
T ss_pred             EecCCCCc
Confidence            99999999

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08291 ectoine utilization protein EutC; Validated

Probab=98.98  E-value=1.1e-09  Score=112.83  Aligned_cols=111  Identities=19%  Similarity=0.113  Sum_probs=85.7

Q ss_pred             HHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHh-CCC-eE
Q 011136          330 KSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA-KGA-RV  407 (493)
Q Consensus       330 ~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~-~g~-~i  407 (493)
                      ...|++|+++..  +++|.|+|||+.|++.+..  +.           ....++++|+|+|++|++.+.++.. .++ +|
T Consensus        96 ~~tG~~~ai~~d--~~~lt~~rT~a~~~~a~~~--la-----------~~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V  160 (330)
T PRK08291         96 ARTGLVEALLLD--NGYLTDVRTAAAGAVAARH--LA-----------REDASRAAVIGAGEQARLQLEALTLVRPIREV  160 (330)
T ss_pred             CCCCceEEEEcC--CchHHHHHHHHHHHHHHHH--hC-----------CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEE
Confidence            457999999765  7899999999999999874  32           1135789999999999999999986 566 99


Q ss_pred             EEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccC
Q 011136          408 VIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLG  461 (493)
Q Consensus       408 ~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG  461 (493)
                      +|+||+.++++++++.+.... .    -.+.+..++++.. .+.+|++++||..
T Consensus       161 ~v~~R~~~~a~~l~~~~~~~~-g----~~v~~~~d~~~al-~~aDiVi~aT~s~  208 (330)
T PRK08291        161 RVWARDAAKAEAYAADLRAEL-G----IPVTVARDVHEAV-AGADIIVTTTPSE  208 (330)
T ss_pred             EEEcCCHHHHHHHHHHHhhcc-C----ceEEEeCCHHHHH-ccCCEEEEeeCCC
Confidence            999999999999999875321 0    1344444444433 4678999999976

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.91  E-value=3e-09  Score=109.53  Aligned_cols=110  Identities=16%  Similarity=0.101  Sum_probs=85.3

Q ss_pred             HhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHH-hCCC-eEE
Q 011136          331 SIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAK-AKGA-RVV  408 (493)
Q Consensus       331 ~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~-~~g~-~i~  408 (493)
                      ..|++|+++..  ++.+.|+|||+.|++.+..  +..           ...++++|||+|++|++.+.+|. ..+. +|+
T Consensus        94 ~tG~~~ai~~d--~~~lT~~RTaa~~~laa~~--la~-----------~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~  158 (326)
T TIGR02992        94 RTGLLQALLLD--NGYLTDVRTAAAGAVAARH--LAR-----------EDSSVVAIFGAGMQARLQLEALTLVRDIRSAR  158 (326)
T ss_pred             CCCCceEEEcC--CchHHHHHHHHHHHHHHHH--hCC-----------CCCcEEEEECCCHHHHHHHHHHHHhCCccEEE
Confidence            56999999765  7889999999999999864  321           13578999999999999999997 4677 899


Q ss_pred             EEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccC
Q 011136          409 IANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLG  461 (493)
Q Consensus       409 v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG  461 (493)
                      |+||+.++++++++.+.... .    -++.+..++++.. .+.+|++++||-.
T Consensus       159 V~~R~~~~a~~~a~~~~~~~-g----~~v~~~~~~~~av-~~aDiVvtaT~s~  205 (326)
T TIGR02992       159 IWARDSAKAEALALQLSSLL-G----IDVTAATDPRAAM-SGADIIVTTTPSE  205 (326)
T ss_pred             EECCCHHHHHHHHHHHHhhc-C----ceEEEeCCHHHHh-ccCCEEEEecCCC
Confidence            99999999999999875321 0    1344445544443 5689999999875

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.88  E-value=1.5e-08  Score=92.34  Aligned_cols=114  Identities=27%  Similarity=0.299  Sum_probs=81.1

Q ss_pred             ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhc
Q 011136          352 TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLN  430 (493)
Q Consensus       352 TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~  430 (493)
                      ||++||..++++. .          .++++++++|+|+|++|++++.+|.+.|. +|++++|+.++++++++.+......
T Consensus         1 td~~g~~~a~~~~-~----------~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~   69 (155)
T cd01065           1 TDGLGFVRALEEA-G----------IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIA   69 (155)
T ss_pred             CCHHHHHHHHHhh-C----------CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccc
Confidence            8999999999863 1          34678999999999999999999999974 9999999999999998877642100


Q ss_pred             ccccceEEEEeecccccCCceEEEEeccccCCc-hhhHhhhhhHHHHhhccceEeeecc
Q 011136          431 TLLFDSVIVIRILLFTWHLKFFIAANIIHLGNH-LEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       431 ~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~-~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                             ....+..+. -.+.++++++||-+.+ .+...  +..  ...-++.+|||-.
T Consensus        70 -------~~~~~~~~~-~~~~Dvvi~~~~~~~~~~~~~~--~~~--~~~~~~~~v~D~~  116 (155)
T cd01065          70 -------IAYLDLEEL-LAEADLIINTTPVGMKPGDELP--LPP--SLLKPGGVVYDVV  116 (155)
T ss_pred             -------eeecchhhc-cccCCEEEeCcCCCCCCCCCCC--CCH--HHcCCCCEEEEcC
Confidence                   001122211 2568999999999997 22221  111  1125778888854

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.69  E-value=2.1e-08  Score=106.34  Aligned_cols=129  Identities=19%  Similarity=0.154  Sum_probs=90.1

Q ss_pred             chHHHhhhhhhhcHHHHHhcceeeEEEe---c--cCCeE------EEEeccHHHHHH--HHHhhhcccCCCCCCcccccC
Q 011136          314 HKEAAVKCCDEVDTVAKSIGAVNCIIRR---Q--SDGKL------FGYNTDYVGAIS--AIEDGLRGRLNVSGGVSSALA  380 (493)
Q Consensus       314 ~K~~v~~~~d~~~~~A~~igAvNti~~~---~--~~g~l------~G~NTD~~G~~~--~l~~~l~~~~~~~~~~~~~l~  380 (493)
                      --.+|++++.+.-..|+..|+++.++.+   .  ..||-      +|.+.=.++.++  ..++.+           .++.
T Consensus       112 GE~QIlgQVK~A~~~A~~~g~~g~~L~~lf~~A~~~aKrVrteT~I~~~~vSv~~~Av~la~~~~-----------~~l~  180 (414)
T PRK13940        112 GEPQILGQVKDSYTLSKKNHAIGKELDRVFQKVFATAKRVRSETRIGHCPVSVAFSAITLAKRQL-----------DNIS  180 (414)
T ss_pred             CcHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHh-----------cCcc
Confidence            3578999999999999999998887643   0  11221      233333344322  112211           3577


Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      +++++|+|+||||++++.+|...|+ +|+|+|||.++++.|++.++..        .+.-+.++.+.+ .+++|++|||+
T Consensus       181 ~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~--------~~~~~~~l~~~l-~~aDiVI~aT~  251 (414)
T PRK13940        181 SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA--------SAHYLSELPQLI-KKADIIIAAVN  251 (414)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCC--------eEecHHHHHHHh-ccCCEEEECcC
Confidence            9999999999999999999999998 9999999999999999987521        111122333334 56899999998


Q ss_pred             cCC
Q 011136          460 LGN  462 (493)
Q Consensus       460 lG~  462 (493)
                      -.-
T Consensus       252 a~~  254 (414)
T PRK13940        252 VLE  254 (414)
T ss_pred             CCC
Confidence            643

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.63  E-value=1.1e-07  Score=93.02  Aligned_cols=104  Identities=17%  Similarity=0.105  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC---eEEEEeCC----hHHHH-------H
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA---RVVIANRT----YGESL-------T  419 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~---~i~v~~R~----~~~a~-------~  419 (493)
                      ..||..+++..           +.++++++++|+||||+|+++++.|...|+   +|+|+||+    .++++       +
T Consensus         9 lAG~~~al~~~-----------g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~   77 (226)
T cd05311           9 LAGLLNALKLV-----------GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNE   77 (226)
T ss_pred             HHHHHHHHHHh-----------CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHH
Confidence            35777787642           146789999999999999999999999996   59999999    66653       3


Q ss_pred             HHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136          420 FLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       420 la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      +++.++...     .+     .++.+.. .+.++++|+||.|+.....       ...+.+..+|+|
T Consensus        78 la~~~~~~~-----~~-----~~l~~~l-~~~dvlIgaT~~G~~~~~~-------l~~m~~~~ivf~  126 (226)
T cd05311          78 IAKETNPEK-----TG-----GTLKEAL-KGADVFIGVSRPGVVKKEM-------IKKMAKDPIVFA  126 (226)
T ss_pred             HHHHhccCc-----cc-----CCHHHHH-hcCCEEEeCCCCCCCCHHH-------HHhhCCCCEEEE
Confidence            444332110     00     1222222 3468999999999965322       223345666665

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.56  E-value=2.2e-07  Score=97.58  Aligned_cols=166  Identities=18%  Similarity=0.224  Sum_probs=106.9

Q ss_pred             HHHHHHHHHcCCC------ceeeccccccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEe--
Q 011136          270 ILYNEAFKSVGFN------GVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRR--  341 (493)
Q Consensus       270 ~ihn~~f~~~gl~------~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~--  341 (493)
                      .+-+-.++..+++      +.|...+-+-++.+++-.  .|+.-+.+.   -.+|++++...-..|+.-|.+.+++.+  
T Consensus        64 ~~~~~l~~~~~~~~~~l~~~~~v~~~~~Av~HLfrVA--sGLDSmVlG---E~QILGQVK~Ay~~a~~~g~~g~~L~~lF  138 (414)
T COG0373          64 ELIRFLAELHGLSIEDLGKYLYVLRGEEAVRHLFRVA--SGLDSLVLG---ETQILGQVKDAYAKAQENGTLGKVLNRLF  138 (414)
T ss_pred             chhHHHHHhcCCChhhhccCeEEEcCHHHHHHHHHHh--ccchhhhcC---cHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            4444445555543      244444444566665543  233333332   468999999999999999998887643  


Q ss_pred             -c--cCCe------EEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEe
Q 011136          342 -Q--SDGK------LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIAN  411 (493)
Q Consensus       342 -~--~~g~------l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~  411 (493)
                       .  +-|+      -+|.|-=.++..+ ++-. .+ .      ..+++++++||||||.|+..++.+|...|+ +|+|+|
T Consensus       139 qkAi~~gKrvRseT~I~~~~VSi~saA-v~lA-~~-~------~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaN  209 (414)
T COG0373         139 QKAISVGKRVRSETGIGKGAVSISSAA-VELA-KR-I------FGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIAN  209 (414)
T ss_pred             HHHHHHHHHhhcccCCCCCccchHHHH-HHHH-HH-H------hcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEc
Confidence             1  1232      2455555555533 2211 11 0      134889999999999999999999999998 999999


Q ss_pred             CChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          412 RTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       412 R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      ||.+||++||++++...         .-++++.... .+++|++=+|+
T Consensus       210 RT~erA~~La~~~~~~~---------~~l~el~~~l-~~~DvVissTs  247 (414)
T COG0373         210 RTLERAEELAKKLGAEA---------VALEELLEAL-AEADVVISSTS  247 (414)
T ss_pred             CCHHHHHHHHHHhCCee---------ecHHHHHHhh-hhCCEEEEecC
Confidence            99999999999999322         1123333344 45566665553

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.52  E-value=4e-08  Score=104.71  Aligned_cols=155  Identities=19%  Similarity=0.159  Sum_probs=103.0

Q ss_pred             chHHHhhhhhhhcHHHHHhcceeeEEEe---c--cCCeEEEEeccHHHH-----HHHHHhhhcccCCCCCCcccccCCCE
Q 011136          314 HKEAAVKCCDEVDTVAKSIGAVNCIIRR---Q--SDGKLFGYNTDYVGA-----ISAIEDGLRGRLNVSGGVSSALAGKL  383 (493)
Q Consensus       314 ~K~~v~~~~d~~~~~A~~igAvNti~~~---~--~~g~l~G~NTD~~G~-----~~~l~~~l~~~~~~~~~~~~~l~~~~  383 (493)
                      =+.+|+++++...+.|+..|++|+++..   .  ..++.++.+|+..+.     ..+++.....        ..++.+++
T Consensus       113 GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~~k~v~~~t~i~~~~~Sv~~~Av~~a~~~--------~~~~~~~~  184 (423)
T PRK00045        113 GEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSVAKRVRTETGIGAGAVSVASAAVELAKQI--------FGDLSGKK  184 (423)
T ss_pred             CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHhhhcCCCCCCcCHHHHHHHHHHHh--------hCCccCCE
Confidence            5788999999999999999999998732   0  145677778884332     1233321110        02467899


Q ss_pred             EEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCC
Q 011136          384 FVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGN  462 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~  462 (493)
                      ++|+|+|++|++++..|...|+ +|+++||+.++++.+++.++...         ..+.++.+.. .++++++++||-.-
T Consensus       185 vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~---------~~~~~~~~~l-~~aDvVI~aT~s~~  254 (423)
T PRK00045        185 VLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEA---------IPLDELPEAL-AEADIVISSTGAPH  254 (423)
T ss_pred             EEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcE---------eeHHHHHHHh-ccCCEEEECCCCCC
Confidence            9999999999999999999998 99999999999999998876311         1112222222 45789999997443


Q ss_pred             chhhHhhhhhHHHHhh--ccceEeeecc
Q 011136          463 HLEWVTAAFNLFFYLT--CNSYVVMEKT  488 (493)
Q Consensus       463 ~~~~~~~~~~~~~~~~--~~~~~~~~~~  488 (493)
                      +  .+...+.......  -+..+++|-.
T Consensus       255 ~--~i~~~~l~~~~~~~~~~~~vviDla  280 (423)
T PRK00045        255 P--IIGKGMVERALKARRHRPLLLVDLA  280 (423)
T ss_pred             c--EEcHHHHHHHHhhccCCCeEEEEeC
Confidence            3  1233333222111  1356777743

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.41  E-value=1.6e-06  Score=82.51  Aligned_cols=103  Identities=22%  Similarity=0.143  Sum_probs=72.3

Q ss_pred             EEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          349 GYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       349 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      |-||-....+.++++.+.+.       +.++++++++|+|+ |++|++++..|.+.|++|++++|+.++++++++.+...
T Consensus         3 G~~~ta~aav~~~~~~l~~~-------~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~   75 (194)
T cd01078           3 GSNTTAAAAVAAAGKALELM-------GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRAR   75 (194)
T ss_pred             CcHHHHHHHHHHHHHHHHHh-------CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhh
Confidence            44555555566666655421       24678999999996 99999999999999999999999999999998876522


Q ss_pred             hhcccccceEEEEe--ecc--cccCCceEEEEeccccCCc
Q 011136          428 LLNTLLFDSVIVIR--ILL--FTWHLKFFIAANIIHLGNH  463 (493)
Q Consensus       428 ~~~~~~~~~~~v~~--~l~--~~~~~~~~i~~n~tplG~~  463 (493)
                      .-     ..+....  +.+  ..+-.+.++++++||.|+.
T Consensus        76 ~~-----~~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~  110 (194)
T cd01078          76 FG-----EGVGAVETSDDAARAAAIKGADVVFAAGAAGVE  110 (194)
T ss_pred             cC-----CcEEEeeCCCHHHHHHHHhcCCEEEECCCCCce
Confidence            10     0111111  111  1233567899999999997

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.20  E-value=1.1e-05  Score=81.64  Aligned_cols=93  Identities=20%  Similarity=0.164  Sum_probs=64.2

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|++++|+|+|++|++++..|...|++|++++|+.++.+.+.+ .+...        +. +.++.+.. .+.++++|
T Consensus       147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~-~g~~~--------~~-~~~l~~~l-~~aDiVin  215 (287)
T TIGR02853       147 FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITE-MGLIP--------FP-LNKLEEKV-AEIDIVIN  215 (287)
T ss_pred             CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-CCCee--------ec-HHHHHHHh-ccCCEEEE
Confidence            4678999999999999999999999999999999999877655432 11110        00 12232333 56899999


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|.++-....       +..+-++.+++|-
T Consensus       216 t~P~~ii~~~~-------l~~~k~~aliIDl  239 (287)
T TIGR02853       216 TIPALVLTADV-------LSKLPKHAVIIDL  239 (287)
T ss_pred             CCChHHhCHHH-------HhcCCCCeEEEEe
Confidence            99998643222       2333456777763

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN00203 glutamyl-tRNA reductase

Probab=98.11  E-value=2.9e-06  Score=92.34  Aligned_cols=133  Identities=17%  Similarity=0.127  Sum_probs=89.6

Q ss_pred             hHHHhhhhhhhcHHHHHhcceeeEEEe---c--cCCeE------EEEeccHHHHHH--HHHhhhcccCCCCCCcccccCC
Q 011136          315 KEAAVKCCDEVDTVAKSIGAVNCIIRR---Q--SDGKL------FGYNTDYVGAIS--AIEDGLRGRLNVSGGVSSALAG  381 (493)
Q Consensus       315 K~~v~~~~d~~~~~A~~igAvNti~~~---~--~~g~l------~G~NTD~~G~~~--~l~~~l~~~~~~~~~~~~~l~~  381 (493)
                      -.+|++++.+.-..|+..|+++.++.+   .  ..||-      +|.+.=.++.++  ..++.+.         ..++.+
T Consensus       196 E~QIlgQVK~A~~~A~~~g~~g~~L~~LF~~Ai~~~KrVRteT~I~~~~vSv~s~Av~la~~~~~---------~~~l~~  266 (519)
T PLN00203        196 EGQILAQVKQVVKVGQGVDGFGRNLSGLFKHAITAGKRVRTETNIASGAVSVSSAAVELALMKLP---------ESSHAS  266 (519)
T ss_pred             ChHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhcC---------CCCCCC
Confidence            467999999999999999998877643   0  12222      233333333322  1122121         013778


Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      ++++|||+|+||++++.+|...|+ +|+|+||+.++++.+++.++....      .+..+.++.+.+ .+.+|++.+||-
T Consensus       267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i------~~~~~~dl~~al-~~aDVVIsAT~s  339 (519)
T PLN00203        267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEI------IYKPLDEMLACA-AEADVVFTSTSS  339 (519)
T ss_pred             CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCce------EeecHhhHHHHH-hcCCEEEEccCC
Confidence            999999999999999999999998 899999999999999987752211      111112333333 567899999987


Q ss_pred             CCc
Q 011136          461 GNH  463 (493)
Q Consensus       461 G~~  463 (493)
                      +.+
T Consensus       340 ~~p  342 (519)
T PLN00203        340 ETP  342 (519)
T ss_pred             CCC
Confidence            665

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.97  E-value=2.1e-05  Score=80.56  Aligned_cols=154  Identities=20%  Similarity=0.193  Sum_probs=97.5

Q ss_pred             CchHHHhhhhhhhcHHHHHhcceeeEEEe---c--cCCe------EEEEeccHHHHHHHHHhhhcccCCCCCCcccccCC
Q 011136          313 PHKEAAVKCCDEVDTVAKSIGAVNCIIRR---Q--SDGK------LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAG  381 (493)
Q Consensus       313 P~K~~v~~~~d~~~~~A~~igAvNti~~~---~--~~g~------l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~  381 (493)
                      ---.+|++++.+.-..|+..|.++.++.+   .  +-++      -++.+.=..+.. +++.....        ...+.+
T Consensus       108 ~GE~qIlgQvk~A~~~a~~~g~~~~~L~~lf~~a~~~~k~vr~et~i~~~~~sv~~~-Av~~a~~~--------~~~l~~  178 (311)
T cd05213         108 VGETQILGQVKNAYKLAKEAGTSGKLLNRLFQKAIKVGKRVRTETGISRGAVSISSA-AVELAEKI--------FGNLKG  178 (311)
T ss_pred             cCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHH-HHHHHHHH--------hCCccC
Confidence            34678999999999999999998877643   0  0111      122222233332 23321110        023678


Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      ++++|+|+|.+|+.++..|...|+ +|+++||+.++++++++.++...         ..+.++.+.. .+.++++.+||-
T Consensus       179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~---------~~~~~~~~~l-~~aDvVi~at~~  248 (311)
T cd05213         179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNA---------VPLDELLELL-NEADVVISATGA  248 (311)
T ss_pred             CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeE---------EeHHHHHHHH-hcCCEEEECCCC
Confidence            999999999999999999998887 99999999999999999876411         1112222222 457899999997


Q ss_pred             CCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          461 GNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       461 G~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      .-+.+.+.+....   ..-++++++|-.
T Consensus       249 ~~~~~~~~~~~~~---~~~~~~~viDla  273 (311)
T cd05213         249 PHYAKIVERAMKK---RSGKPRLIVDLA  273 (311)
T ss_pred             CchHHHHHHHHhh---CCCCCeEEEEeC
Confidence            6652323221111   112567888753

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.77  E-value=0.0002  Score=68.70  Aligned_cols=110  Identities=16%  Similarity=0.108  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccc
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLL  433 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~  433 (493)
                      +.|...+++..+...-     .+.+++|++++|+|.|.+|+.++..|.+.|++|++++++.++.+++++.++....    
T Consensus         6 g~Gv~~~~~~~~~~~~-----~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v----   76 (200)
T cd01075           6 AYGVFLGMKAAAEHLL-----GTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV----   76 (200)
T ss_pred             HHHHHHHHHHHHHHhc-----CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE----
Confidence            5666666665443210     0257889999999999999999999999999999999999998888876542211    


Q ss_pred             cceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          434 FDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       434 ~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                             . .++.|..+.+|++|+..-+        ..+.......+.++|.+..
T Consensus        77 -------~-~~~l~~~~~Dv~vp~A~~~--------~I~~~~~~~l~~~~v~~~A  115 (200)
T cd01075          77 -------A-PEEIYSVDADVFAPCALGG--------VINDDTIPQLKAKAIAGAA  115 (200)
T ss_pred             -------c-chhhccccCCEEEeccccc--------ccCHHHHHHcCCCEEEECC
Confidence                   1 1234444678888776633        2222233345667776653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.76  E-value=5.9e-05  Score=76.78  Aligned_cols=93  Identities=20%  Similarity=0.126  Sum_probs=61.9

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.+++++|+|+|++|++++..|+.+|++|++++|+.++.+. ++.++...         .-+.++.+.. .++++++|
T Consensus       148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~-~~~~G~~~---------~~~~~l~~~l-~~aDiVI~  216 (296)
T PRK08306        148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLAR-ITEMGLSP---------FHLSELAEEV-GKIDIIFN  216 (296)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHcCCee---------ecHHHHHHHh-CCCCEEEE
Confidence            4567899999999999999999999999999999999776433 33333211         0012232222 56899999


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|.++-.+       ..+..+-++.+|.|-
T Consensus       217 t~p~~~i~~-------~~l~~~~~g~vIIDl  240 (296)
T PRK08306        217 TIPALVLTK-------EVLSKMPPEALIIDL  240 (296)
T ss_pred             CCChhhhhH-------HHHHcCCCCcEEEEE
Confidence            998653221       123334467777763

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.69  E-value=8.9e-05  Score=76.09  Aligned_cols=75  Identities=13%  Similarity=0.045  Sum_probs=56.1

Q ss_pred             CCCEEEEEecchHHHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~-~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                      +.++++|||+|++|++.+.++.. .+. +|+|+||++++++++++.+.....      .+.+..+.++.. .+.+|++++
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~------~~~~~~~~~~av-~~aDIVi~a  196 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGF------DAEVVTDLEAAV-RQADIISCA  196 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCC------ceEEeCCHHHHH-hcCCEEEEe
Confidence            46899999999999999987766 566 999999999999999998753211      233334443333 456788888


Q ss_pred             cccC
Q 011136          458 IHLG  461 (493)
Q Consensus       458 tplG  461 (493)
                      ||-.
T Consensus       197 T~s~  200 (314)
T PRK06141        197 TLST  200 (314)
T ss_pred             eCCC
Confidence            8865

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.67  E-value=0.00041  Score=57.26  Aligned_cols=52  Identities=33%  Similarity=0.533  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R  412 (493)
                      +.|.+..|+.....       .+..+++++++|+|+|++|+.++.+|.+.|. +|++++|
T Consensus         3 ~~~~~~~l~~~~~~-------~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191           3 AAGAVALLKAAGKV-------TNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             hHHHHHHHHHHHHH-------hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            56777777765431       1245789999999999999999999999965 9999999

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.65  E-value=0.00031  Score=58.63  Aligned_cols=89  Identities=19%  Similarity=0.137  Sum_probs=62.2

Q ss_pred             EEEEEecchHHHHHHHHHHhCC---CeEEEE-eCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          383 LFVVIGAGGAGKALAYGAKAKG---ARVVIA-NRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g---~~i~v~-~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      ++.|||+|.+|.+++..|.+.|   .+|+++ +|++++++++++++...-..         -...+.-+..|..|++   
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~~~~advvila---   68 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATA---------DDNEEAAQEADVVILA---   68 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEES---------EEHHHHHHHTSEEEE----
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcccccc---------CChHHhhccCCEEEEE---
Confidence            5788999999999999999999   589955 99999999999987722110         0111111125566666   


Q ss_pred             ccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          459 HLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       459 plG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                         ++|..+..-.... ....++++|+|-
T Consensus        69 ---v~p~~~~~v~~~i-~~~~~~~~vis~   93 (96)
T PF03807_consen   69 ---VKPQQLPEVLSEI-PHLLKGKLVISI   93 (96)
T ss_dssp             ---S-GGGHHHHHHHH-HHHHTTSEEEEE
T ss_pred             ---ECHHHHHHHHHHH-hhccCCCEEEEe
Confidence               8888887655555 556788888874

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.63  E-value=0.00014  Score=75.04  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=59.0

Q ss_pred             CCCEEEEEecchHHHHHHHHHH-hCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136          380 AGKLFVVIGAGGAGKALAYGAK-AKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~-~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                      ..++++|+|+|++|++.+.++. ..++ +|.|+||+.++++++++.+....-     ..+.+..+.++.. .+.+|++++
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~aDiVi~a  199 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFN-----TEIYVVNSADEAI-EEADIIVTV  199 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CcEEEeCCHHHHH-hcCCEEEEc
Confidence            3678999999999999998875 4577 999999999999999987753310     1234444444333 578999999


Q ss_pred             cccCCch
Q 011136          458 IHLGNHL  464 (493)
Q Consensus       458 tplG~~~  464 (493)
                      ||-+ +|
T Consensus       200 T~s~-~p  205 (325)
T PRK08618        200 TNAK-TP  205 (325)
T ss_pred             cCCC-Cc
Confidence            9977 44

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.59  E-value=0.00082  Score=67.91  Aligned_cols=142  Identities=20%  Similarity=0.295  Sum_probs=88.4

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHH--hhhhhhhcH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDT  327 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~  327 (493)
                      .-++| +|-+++.--.. -..++++|++.....++-    +++.+.++.+ .+++..|.-|-.|.-..+  ...++.+++
T Consensus        37 ii~vg~~~as~~Yv~~k-~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p  115 (286)
T PRK14175         37 VILVGNDGASQSYVRSK-KKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINP  115 (286)
T ss_pred             EEEeCCCHHHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence            34556 44444444333 456889999987766664    3577777777 567899999999964322  112222222


Q ss_pred             HHHHhcceeeEEEeccCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHH
Q 011136          328 VAKSIGAVNCIIRRQSDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK  401 (493)
Q Consensus       328 ~A~~igAvNti~~~~~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~  401 (493)
                       .+.+-..+..    +-|+++ |.    -.--.|++..|+..           +.+++||+++|+|.|+ +|+.++..|.
T Consensus       116 -~KDVDGl~~~----n~g~l~~~~~~~~PcTp~ai~~ll~~~-----------~i~l~Gk~vvVIGrs~~VG~pla~lL~  179 (286)
T PRK14175        116 -EKDVDGFHPI----NIGKLYIDEQTFVPCTPLGIMEILKHA-----------DIDLEGKNAVVIGRSHIVGQPVSKLLL  179 (286)
T ss_pred             -ccCcccCCcc----chHhHhcCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCCchhHHHHHHHHH
Confidence             1222222221    012222 11    11246666766652           2578999999999999 9999999999


Q ss_pred             hCCCeEEEEeCCh
Q 011136          402 AKGARVVIANRTY  414 (493)
Q Consensus       402 ~~g~~i~v~~R~~  414 (493)
                      ..|+.|++++|..
T Consensus       180 ~~gatVtv~~s~t  192 (286)
T PRK14175        180 QKNASVTILHSRS  192 (286)
T ss_pred             HCCCeEEEEeCCc
Confidence            9999999998853

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.59  E-value=0.00026  Score=72.29  Aligned_cols=74  Identities=15%  Similarity=-0.058  Sum_probs=54.4

Q ss_pred             CCCEEEEEecchHHHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~-~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                      ..++++|+|+|++|++.+.++.. .+. +|+|+||+.++++++++.+.....      .+. ..+.++.. .+.+|++++
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~------~~~-~~~~~~av-~~aDiVita  195 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGP------TAE-PLDGEAIP-EAVDLVVTA  195 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCC------eeE-ECCHHHHh-hcCCEEEEc
Confidence            46899999999999999999975 577 899999999999999998864321      111 12333222 466777777


Q ss_pred             cccC
Q 011136          458 IHLG  461 (493)
Q Consensus       458 tplG  461 (493)
                      ||-.
T Consensus       196 T~s~  199 (304)
T PRK07340        196 TTSR  199 (304)
T ss_pred             cCCC
Confidence            7743

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.52  E-value=0.00012  Score=78.08  Aligned_cols=74  Identities=26%  Similarity=0.260  Sum_probs=57.3

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      .+.+++++|+|+|.+|+.++..|...|+ +|+++||+.++++++++.++....+         ..++.+.+ .++++++.
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~---------~~~l~~~l-~~aDvVi~  246 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVK---------FEDLEEYL-AEADIVIS  246 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEee---------HHHHHHHH-hhCCEEEE
Confidence            4678999999999999999999999996 9999999999999999877642211         12232333 46788998


Q ss_pred             ccccC
Q 011136          457 IIHLG  461 (493)
Q Consensus       457 ~tplG  461 (493)
                      +|+-.
T Consensus       247 aT~s~  251 (417)
T TIGR01035       247 STGAP  251 (417)
T ss_pred             CCCCC
Confidence            88644

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.46  E-value=0.00054  Score=64.05  Aligned_cols=40  Identities=33%  Similarity=0.381  Sum_probs=35.7

Q ss_pred             cccCCCEEEEEecchH-HHHHHHHHHhCCCeEEEEeCChHH
Q 011136          377 SALAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGa-ara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      .++++++++|+|+|++ |+.++..|.+.|++|+++||+.+.
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~   80 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKN   80 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchh
Confidence            4688999999999996 888999999999999999999643

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.44  E-value=0.00061  Score=69.64  Aligned_cols=83  Identities=17%  Similarity=0.052  Sum_probs=59.8

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      +++.|||+|++|++++++|+..|.  +|++++|+.++++.++.++........  ..+.+...-.+.. .+.+|++++++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~--~~~~i~~~~~~~l-~~aDIVIitag   77 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLP--SPVKIKAGDYSDC-KDADIVVITAG   77 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccC--CCeEEEcCCHHHh-CCCCEEEEccC
Confidence            379999999999999999999994  899999999999999998865542111  1122222222233 68899999998


Q ss_pred             c----CCchhhH
Q 011136          460 L----GNHLEWV  467 (493)
Q Consensus       460 l----G~~~~~~  467 (493)
                      .    |+....+
T Consensus        78 ~~~~~g~~R~dl   89 (306)
T cd05291          78 APQKPGETRLDL   89 (306)
T ss_pred             CCCCCCCCHHHH
Confidence            7    5554443

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.40  E-value=0.00036  Score=73.26  Aligned_cols=99  Identities=13%  Similarity=0.080  Sum_probs=65.1

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      +.+++++|+|+|++|+.++..|..+|++|++++|+.++.+.+...+.......  ...   ...+.+.. .+.++++|++
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~--~~~---~~~l~~~l-~~aDvVI~a~  238 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTR--YSN---AYEIEDAV-KRADLLIGAV  238 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEec--cCC---HHHHHHHH-ccCCEEEEcc
Confidence            45678999999999999999999999999999999999888877654311000  000   01222333 5689999999


Q ss_pred             cc-CCc-hhhHhhhhhHHHHhhccceEeee
Q 011136          459 HL-GNH-LEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       459 pl-G~~-~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      ++ |.. |..+.....   ..+-++.+|.|
T Consensus       239 ~~~g~~~p~lit~~~l---~~mk~g~vIvD  265 (370)
T TIGR00518       239 LIPGAKAPKLVSNSLV---AQMKPGAVIVD  265 (370)
T ss_pred             ccCCCCCCcCcCHHHH---hcCCCCCEEEE
Confidence            87 553 433332222   22334566766

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.25  E-value=0.00032  Score=72.44  Aligned_cols=93  Identities=14%  Similarity=0.149  Sum_probs=66.2

Q ss_pred             chHHHhhhhhhhcHHHHHhcceeeEEEe---c--cCCe------EEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCC
Q 011136          314 HKEAAVKCCDEVDTVAKSIGAVNCIIRR---Q--SDGK------LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGK  382 (493)
Q Consensus       314 ~K~~v~~~~d~~~~~A~~igAvNti~~~---~--~~g~------l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~  382 (493)
                      --.+|++++.+.-..|+..|+++..+.+   .  ..||      -+|.+-=..+.+ +.+. ...        ..+++++
T Consensus       106 GE~QIlGQVK~Ay~~A~~~g~~g~~L~~lf~~A~~~aKrVRteT~I~~~~vSv~s~-av~~-~~~--------~~~l~~k  175 (338)
T PRK00676        106 GETEIQGQVKRAYLKAARERKLPFALHFLFQKALKEGKVFRSKGGAPYAEVTIESV-VQQE-LRR--------RQKSKKA  175 (338)
T ss_pred             CcHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHH-HHHH-HHH--------hCCccCC
Confidence            3568999999999999999988776533   0  1122      234443344443 2221 111        1357899


Q ss_pred             EEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGE  416 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~  416 (493)
                      ++||||+|.||+.++.+|.+.|+ +|+|+|||.+.
T Consensus       176 ~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~  210 (338)
T PRK00676        176 SLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT  210 (338)
T ss_pred             EEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence            99999999999999999999998 89999999853

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.07  E-value=0.0061  Score=56.49  Aligned_cols=92  Identities=24%  Similarity=0.170  Sum_probs=53.1

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.||+++|+|.|..|+.+|.+|+..|++|+|+.+++-++-+-..  ....          + ..+++.. ++.+|++.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~--dGf~----------v-~~~~~a~-~~adi~vt   84 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAM--DGFE----------V-MTLEEAL-RDADIFVT   84 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH--TT-E----------E-E-HHHHT-TT-SEEEE
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhh--cCcE----------e-cCHHHHH-hhCCEEEE
Confidence            5678999999999999999999999999999999999977654332  2111          1 1222222 45567777


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      +|.--   +.+.   .+.|..+.++.+|.+-+
T Consensus        85 aTG~~---~vi~---~e~~~~mkdgail~n~G  110 (162)
T PF00670_consen   85 ATGNK---DVIT---GEHFRQMKDGAILANAG  110 (162)
T ss_dssp             -SSSS---SSB----HHHHHHS-TTEEEEESS
T ss_pred             CCCCc---cccC---HHHHHHhcCCeEEeccC
Confidence            66542   1111   22345566777776543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.04  E-value=0.00067  Score=71.22  Aligned_cols=83  Identities=24%  Similarity=0.269  Sum_probs=55.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      +++||||+|+.|++++.-|++.|- +|+|++|+.+++.++++.... ......-| +.-.+.+.+-. .++++++|+.|=
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-~v~~~~vD-~~d~~al~~li-~~~d~VIn~~p~   78 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-KVEALQVD-AADVDALVALI-KDFDLVINAAPP   78 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-cceeEEec-ccChHHHHHHH-hcCCEEEEeCCc
Confidence            579999999999999999999995 999999999999999775422 11111011 00001222223 556889988775


Q ss_pred             CCchhhH
Q 011136          461 GNHLEWV  467 (493)
Q Consensus       461 G~~~~~~  467 (493)
                      =.....+
T Consensus        79 ~~~~~i~   85 (389)
T COG1748          79 FVDLTIL   85 (389)
T ss_pred             hhhHHHH
Confidence            5555444

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.03  E-value=0.0016  Score=68.48  Aligned_cols=77  Identities=17%  Similarity=0.096  Sum_probs=55.6

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhhhcccccceEE
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLLLNTLLFDSVI  438 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~~~~~~~~~~~  438 (493)
                      +++++|+|+|+||.|..++..|+..|+ +|++++++                   ..|++.+++.+...+..    -++.
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~----v~v~  208 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD----VQVE  208 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC----CEEE
Confidence            346789999999999999999999999 99999998                   67888888887665421    1222


Q ss_pred             EEeec-c----cccCCceEEEEeccc
Q 011136          439 VIRIL-L----FTWHLKFFIAANIIH  459 (493)
Q Consensus       439 v~~~l-~----~~~~~~~~i~~n~tp  459 (493)
                      ..... +    +.+-.++++++++|-
T Consensus       209 ~~~~~~~~~~~~~~~~~~D~Vv~~~d  234 (376)
T PRK08762        209 AVQERVTSDNVEALLQDVDVVVDGAD  234 (376)
T ss_pred             EEeccCChHHHHHHHhCCCEEEECCC
Confidence            22211 1    112256889998863

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.95  E-value=0.0013  Score=65.71  Aligned_cols=87  Identities=18%  Similarity=0.151  Sum_probs=66.1

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEe--------------ec
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIR--------------IL  443 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~--------------~l  443 (493)
                      ..++++||-|| +|.|++++..|++.|+++.++.|+.+|.++|++++....-     -.|+++.              ++
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~-----v~v~vi~~DLs~~~~~~~l~~~l   78 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTG-----VEVEVIPADLSDPEALERLEDEL   78 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhC-----ceEEEEECcCCChhHHHHHHHHH
Confidence            45789999999 9999999999999999999999999999999998886551     0122221              12


Q ss_pred             ccccCCceEEEEeccccCCchhhHhhhh
Q 011136          444 LFTWHLKFFIAANIIHLGNHLEWVTAAF  471 (493)
Q Consensus       444 ~~~~~~~~~i~~n~tplG~~~~~~~~~~  471 (493)
                      .+.- .+.+++||.-+.|.........|
T Consensus        79 ~~~~-~~IdvLVNNAG~g~~g~f~~~~~  105 (265)
T COG0300          79 KERG-GPIDVLVNNAGFGTFGPFLELSL  105 (265)
T ss_pred             HhcC-CcccEEEECCCcCCccchhhCCh
Confidence            2221 25799999999999875554444

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.94  E-value=0.0023  Score=59.13  Aligned_cols=91  Identities=15%  Similarity=0.073  Sum_probs=56.3

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccC-CceEEEEecccc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWH-LKFFIAANIIHL  460 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~i~~n~tpl  460 (493)
                      +++-+||.|-||++++..|.+.|++|+++||+.++++++.+.-            +++..+..+--. .+..+++     
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g------------~~~~~s~~e~~~~~dvvi~~-----   64 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG------------AEVADSPAEAAEQADVVILC-----   64 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT------------EEEESSHHHHHHHBSEEEE------
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh------------hhhhhhhhhHhhcccceEee-----
Confidence            4789999999999999999999999999999999999988642            111222221110 2334444     


Q ss_pred             CCch-hhHhhhhhH--HHHhhccceEeeecccc
Q 011136          461 GNHL-EWVTAAFNL--FFYLTCNSYVVMEKTEI  490 (493)
Q Consensus       461 G~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~  490 (493)
                       ++. +.+.+-+..  .+..+-++.+++|-|-+
T Consensus        65 -v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~   96 (163)
T PF03446_consen   65 -VPDDDAVEAVLFGENILAGLRPGKIIIDMSTI   96 (163)
T ss_dssp             -SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS-
T ss_pred             -cccchhhhhhhhhhHHhhccccceEEEecCCc
Confidence             443 334333333  45555788899887643

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.77  E-value=0.013  Score=56.79  Aligned_cols=42  Identities=24%  Similarity=0.392  Sum_probs=38.1

Q ss_pred             EEEEEe-cchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          383 LFVVIG-AGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       383 ~vlvlG-aGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      ++.||| +|.+|.+++..|.+.|.+|++++|+.++++.+++.+
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~   44 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKA   44 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHH
Confidence            589997 899999999999999999999999999998887754

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.77  E-value=0.0073  Score=61.48  Aligned_cols=131  Identities=20%  Similarity=0.233  Sum_probs=85.0

Q ss_pred             HHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec----
Q 011136          272 YNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ----  342 (493)
Q Consensus       272 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~----  342 (493)
                      -...++++|++.....++-    +++.+.++.+ .+++..|+-|-+|.-.    ++|+    -+.+.+++.-.--+    
T Consensus        54 k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~----~i~~----~~i~~~I~p~KDVDGl~~  125 (301)
T PRK14194         54 KILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPA----HIDE----ARVLQAINPLKDVDGFHS  125 (301)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCC----CCCH----HHHHhccCchhccCccCh
Confidence            3457889999987666653    3677777777 5678999999999742    2221    11222332221110    


Q ss_pred             -cCCeE-EEEe----ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecc-hHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          343 -SDGKL-FGYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       343 -~~g~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaG-Gaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                       +-|++ .|.+    .--.|++.-|+..           +.+++||+++|||.| -+|+.++..|.+.|+.|++++|+..
T Consensus       126 ~N~g~l~~~~~~~~PcTp~aii~lL~~~-----------~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~  194 (301)
T PRK14194        126 ENVGGLSQGRDVLTPCTPSGCLRLLEDT-----------CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST  194 (301)
T ss_pred             hhhhHHhcCCCCCCCCcHHHHHHHHHHh-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC
Confidence             01222 1211    1256777776653           267899999999997 5999999999999999999988765


Q ss_pred             HHHHHH
Q 011136          416 ESLTFL  421 (493)
Q Consensus       416 ~a~~la  421 (493)
                      ..++++
T Consensus       195 ~l~e~~  200 (301)
T PRK14194        195 DAKALC  200 (301)
T ss_pred             CHHHHH
Confidence            444443

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.76  E-value=0.0034  Score=65.20  Aligned_cols=76  Identities=17%  Similarity=0.203  Sum_probs=55.3

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh---------------------HHHHHHHHHhhhhhhcccccc
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY---------------------GESLTFLRLMSWLLLNTLLFD  435 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~---------------------~~a~~la~~~~~~~~~~~~~~  435 (493)
                      .+++++|+|+|+||.|..++..|+..|+ +|+|++++.                     .|++.+++.+...+..    -
T Consensus        21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~----v   96 (338)
T PRK12475         21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSE----V   96 (338)
T ss_pred             hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCC----c
Confidence            3567899999999999999999999999 999999974                     4787787777765521    1


Q ss_pred             eEEEEe------ecccccCCceEEEEecc
Q 011136          436 SVIVIR------ILLFTWHLKFFIAANII  458 (493)
Q Consensus       436 ~~~v~~------~l~~~~~~~~~i~~n~t  458 (493)
                      ++..+.      ++++ .-.++++++++|
T Consensus        97 ~i~~~~~~~~~~~~~~-~~~~~DlVid~~  124 (338)
T PRK12475         97 EIVPVVTDVTVEELEE-LVKEVDLIIDAT  124 (338)
T ss_pred             EEEEEeccCCHHHHHH-HhcCCCEEEEcC
Confidence            222221      1122 236688898887

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.72  E-value=0.0043  Score=58.26  Aligned_cols=94  Identities=22%  Similarity=0.118  Sum_probs=59.3

Q ss_pred             ccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       376 ~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      ...+.|+++.|+|.|..|++++..|...|++|+.++|+........ .....            ..++++-+ +..++++
T Consensus        31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-~~~~~------------~~~l~ell-~~aDiv~   96 (178)
T PF02826_consen   31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-EFGVE------------YVSLDELL-AQADIVS   96 (178)
T ss_dssp             BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-HTTEE------------ESSHHHHH-HH-SEEE
T ss_pred             ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-cccce------------eeehhhhc-chhhhhh
Confidence            3678899999999999999999999999999999999987655121 11111            12343333 5578888


Q ss_pred             eccccCCchhhHhhhhhHHHHhhcc-ceEeee
Q 011136          456 NIIHLGNHLEWVTAAFNLFFYLTCN-SYVVME  486 (493)
Q Consensus       456 n~tplG~~~~~~~~~~~~~~~~~~~-~~~~~~  486 (493)
                      +..|+--.-..+   ++..+...+| +.++.+
T Consensus        97 ~~~plt~~T~~l---i~~~~l~~mk~ga~lvN  125 (178)
T PF02826_consen   97 LHLPLTPETRGL---INAEFLAKMKPGAVLVN  125 (178)
T ss_dssp             E-SSSSTTTTTS---BSHHHHHTSTTTEEEEE
T ss_pred             hhhcccccccee---eeeeeeeccccceEEEe
Confidence            888865443333   3444444444 444443

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.71  E-value=0.0039  Score=59.98  Aligned_cols=46  Identities=22%  Similarity=0.313  Sum_probs=38.6

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHH-HHHHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGE-SLTFLR  422 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~-a~~la~  422 (493)
                      .+++||+|||+|+|.+|...+..|.+.|++|+|++++..+ .+++++
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~   52 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVE   52 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHh
Confidence            5688999999999999999999999999999999987633 344443

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.69  E-value=0.004  Score=57.29  Aligned_cols=80  Identities=21%  Similarity=0.074  Sum_probs=53.7

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh-hc-ccccceEEEEeecccccC-CceEEEEeccc
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL-LN-TLLFDSVIVIRILLFTWH-LKFFIAANIIH  459 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~-~~-~~~~~~~~v~~~l~~~~~-~~~~i~~n~tp  459 (493)
                      +|.|+|+|..|.|++..|+..|.+|+++.|+.+..+.+.+.-.... ++ -...+++++-.++++... .|..|++    
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiia----   76 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIA----   76 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-----
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEec----
Confidence            5899999999999999999999999999999988888876433211 11 111236677676654431 3344444    


Q ss_pred             cCCchhhHh
Q 011136          460 LGNHLEWVT  468 (493)
Q Consensus       460 lG~~~~~~~  468 (493)
                        ++..++.
T Consensus        77 --vPs~~~~   83 (157)
T PF01210_consen   77 --VPSQAHR   83 (157)
T ss_dssp             --S-GGGHH
T ss_pred             --ccHHHHH
Confidence              5555554

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.69  E-value=0.0056  Score=57.75  Aligned_cols=43  Identities=23%  Similarity=0.241  Sum_probs=35.6

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|.|||+|-||++++..++..|++|++++++.+..++..+.+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~   43 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIE   43 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHH
Confidence            5889999999999999999999999999999888776655444

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.61  E-value=0.0082  Score=64.06  Aligned_cols=45  Identities=33%  Similarity=0.402  Sum_probs=39.9

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      ..+.|++|+|+|+|.+|+.++..|+..|++|+++++++.++...+
T Consensus       208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~  252 (425)
T PRK05476        208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAA  252 (425)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH
Confidence            346799999999999999999999999999999999998875443

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.51  E-value=0.0048  Score=62.37  Aligned_cols=96  Identities=16%  Similarity=0.082  Sum_probs=63.5

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGN  462 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~  462 (493)
                      ++.+||-|-||..++..|.+.|++++++||+++++.+++...+.....+.        .+..    .+.++++=..|=+-
T Consensus         2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~--------~eaa----~~aDvVitmv~~~~   69 (286)
T COG2084           2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASP--------AEAA----AEADVVITMLPDDA   69 (286)
T ss_pred             eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCH--------HHHH----HhCCEEEEecCCHH
Confidence            68899999999999999999999999999999997777766554432110        0011    22334443333333


Q ss_pred             chhhHhhhhhHHHHhhccceEeeecccc
Q 011136          463 HLEWVTAAFNLFFYLTCNSYVVMEKTEI  490 (493)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (493)
                      +-+.+...-+-.+....++.+|+|-+.|
T Consensus        70 ~V~~V~~g~~g~~~~~~~G~i~IDmSTi   97 (286)
T COG2084          70 AVRAVLFGENGLLEGLKPGAIVIDMSTI   97 (286)
T ss_pred             HHHHHHhCccchhhcCCCCCEEEECCCC
Confidence            3333333334556666789999998765

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.50  E-value=0.0033  Score=53.78  Aligned_cols=38  Identities=26%  Similarity=0.316  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .+++|+++||+|+|.+|..-+..|.+.|++|+|++.+.
T Consensus         3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            45789999999999999999999999999999999997

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.47  E-value=0.013  Score=58.94  Aligned_cols=88  Identities=14%  Similarity=0.071  Sum_probs=58.3

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC----eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccc-ccCCceEEEEe
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA----RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLF-TWHLKFFIAAN  456 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~----~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~-~~~~~~~i~~n  456 (493)
                      .++.+||+|-||.+++..|.+.|.    +|++++|+.++++.+++.++....           .+..+ -+..|..|++ 
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~-----------~~~~e~~~~aDiIiLa-   70 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITIT-----------TNNNEVANSADILILS-   70 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEe-----------CCcHHHHhhCCEEEEE-
Confidence            479999999999999999999873    699999999999888775542111           11111 1224566666 


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                           ++|..+.+-....-...-++.+|.+
T Consensus        71 -----vkP~~~~~vl~~l~~~~~~~~lvIS   95 (272)
T PRK12491         71 -----IKPDLYSSVINQIKDQIKNDVIVVT   95 (272)
T ss_pred             -----eChHHHHHHHHHHHHhhcCCcEEEE
Confidence                 8887777655432222223456654

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.46  E-value=0.019  Score=58.03  Aligned_cols=42  Identities=24%  Similarity=0.194  Sum_probs=37.3

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      ++|.|||+|-+|.+++..|+..|.+|++++|+.++.++..+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~   45 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKER   45 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence            579999999999999999999999999999998877766544

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=96.45  E-value=0.003  Score=62.03  Aligned_cols=81  Identities=27%  Similarity=0.249  Sum_probs=59.5

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccc------eEEEEeecccccCCce
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFD------SVIVIRILLFTWHLKF  451 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~------~~~v~~~l~~~~~~~~  451 (493)
                      +++|-++|=|| .|.|.|++..|++.|+++.+..|..++.++|+.++.....-....|      .-..++.+.+.| .+.
T Consensus         4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~-g~i   82 (246)
T COG4221           4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEF-GRI   82 (246)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhh-Ccc
Confidence            35688899998 7899999999999999999999999999999999884111011111      011123455778 779


Q ss_pred             EEEEecccc
Q 011136          452 FIAANIIHL  460 (493)
Q Consensus       452 ~i~~n~tpl  460 (493)
                      +|++|--++
T Consensus        83 DiLvNNAGl   91 (246)
T COG4221          83 DILVNNAGL   91 (246)
T ss_pred             cEEEecCCC
Confidence            999996554

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.41  E-value=0.013  Score=56.92  Aligned_cols=51  Identities=16%  Similarity=0.180  Sum_probs=42.6

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC------------------hHHHHHHHHHhhhhh
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT------------------YGESLTFLRLMSWLL  428 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~------------------~~~a~~la~~~~~~~  428 (493)
                      .++.++|+|+|+||+|..++..|+..|+ +|++++.+                  ..|++.+++.+...+
T Consensus        25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln   94 (212)
T PRK08644         25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN   94 (212)
T ss_pred             HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC
Confidence            3567899999999999999999999999 89999887                  257777777666554

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.41  E-value=0.042  Score=49.74  Aligned_cols=75  Identities=16%  Similarity=0.039  Sum_probs=55.8

Q ss_pred             EEEEEec-chHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          383 LFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       383 ~vlvlGa-GGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      ||.|+|+ |..|.++++.|...+.  +|++++++.++++..+.+++.......  -..++-....+.. .+.+|++-+..
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~--~~~~i~~~~~~~~-~~aDivvitag   78 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP--SPVRITSGDYEAL-KDADIVVITAG   78 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST--EEEEEEESSGGGG-TTESEEEETTS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc--ccccccccccccc-ccccEEEEecc
Confidence            6899999 9999999999999986  899999999999999988886653221  1233333444444 56777776654


Q ss_pred             c
Q 011136          460 L  460 (493)
Q Consensus       460 l  460 (493)
                      .
T Consensus        79 ~   79 (141)
T PF00056_consen   79 V   79 (141)
T ss_dssp             T
T ss_pred             c
Confidence            4

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.39  E-value=0.0062  Score=63.13  Aligned_cols=49  Identities=20%  Similarity=0.284  Sum_probs=43.1

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKA-KGA-RVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~-~g~-~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++++|+|+|| |.+|+.++..|.. .|+ +++++||+.++++.+++++.
T Consensus       151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~  202 (340)
T PRK14982        151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELG  202 (340)
T ss_pred             cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhc
Confidence            4678999999999 6799999999975 476 99999999999999988765

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.38  E-value=0.0073  Score=56.69  Aligned_cols=46  Identities=15%  Similarity=0.159  Sum_probs=38.3

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh------------------HHHHHHHHHhhhhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY------------------GESLTFLRLMSWLL  428 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~------------------~~a~~la~~~~~~~  428 (493)
                      +|+|+|+||+|..++..|+..|+ ++++++.+.                  .|++.+++.+...+
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~ln   65 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREIN   65 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHC
Confidence            48999999999999999999999 899999875                  56666666665544

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.38  E-value=0.011  Score=61.81  Aligned_cols=76  Identities=20%  Similarity=0.083  Sum_probs=55.0

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh-------------------HHHHHHHHHhhhhhhcccccceEE
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY-------------------GESLTFLRLMSWLLLNTLLFDSVI  438 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~-------------------~~a~~la~~~~~~~~~~~~~~~~~  438 (493)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++.+.                   .|++.+++.+...+..    -++.
T Consensus        26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~----v~v~  101 (355)
T PRK05597         26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD----VKVT  101 (355)
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC----cEEE
Confidence            567899999999999999999999999 999988764                   6788888777765521    1333


Q ss_pred             EEe-ecc----cccCCceEEEEecc
Q 011136          439 VIR-ILL----FTWHLKFFIAANII  458 (493)
Q Consensus       439 v~~-~l~----~~~~~~~~i~~n~t  458 (493)
                      .+. .+.    ..+-.++++++++|
T Consensus       102 ~~~~~i~~~~~~~~~~~~DvVvd~~  126 (355)
T PRK05597        102 VSVRRLTWSNALDELRDADVILDGS  126 (355)
T ss_pred             EEEeecCHHHHHHHHhCCCEEEECC
Confidence            322 111    12336788888776

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.36  E-value=0.018  Score=58.70  Aligned_cols=140  Identities=21%  Similarity=0.250  Sum_probs=85.5

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeeccc--c--ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLL--V--DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~--~--~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  329 (493)
                      .-++| +|-+++.-- .--..++++|++..-..++  +  +++.+.++.+ .+++..|.-|-.|.-..    +|+   . 
T Consensus        37 ~i~vg~~~~s~~Yv~-~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~----~~~---~-  107 (296)
T PRK14188         37 VVLVGEDPASQVYVR-SKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKH----LDS---E-  107 (296)
T ss_pred             EEEeCCChhHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC----CCH---H-
Confidence            33455 343333332 2345688999987654443  2  4677777777 56789999999997422    221   1 


Q ss_pred             HHhcceeeEEEec-----cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEe-cchHHHHHHH
Q 011136          330 KSIGAVNCIIRRQ-----SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIG-AGGAGKALAY  398 (493)
Q Consensus       330 ~~igAvNti~~~~-----~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlG-aGGaara~~~  398 (493)
                      +.+.+++--.--+     +-|++. |.    -.-..|++.-|+..           +.+++||+|+|+| +|-+|+.++.
T Consensus       108 ~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~-----------~i~~~Gk~V~viGrs~~mG~PmA~  176 (296)
T PRK14188        108 AVIQAIDPEKDVDGLHVVNAGRLATGETALVPCTPLGCMMLLRRV-----------HGDLSGLNAVVIGRSNLVGKPMAQ  176 (296)
T ss_pred             HHHhccCcccccccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEEcCCcchHHHHHH
Confidence            1222222221100     001211 10    11156666666642           2578999999999 7889999999


Q ss_pred             HHHhCCCeEEEE-eCChH
Q 011136          399 GAKAKGARVVIA-NRTYG  415 (493)
Q Consensus       399 ~L~~~g~~i~v~-~R~~~  415 (493)
                      .|.+.|+.|+++ +||.+
T Consensus       177 ~L~~~g~tVtv~~~rT~~  194 (296)
T PRK14188        177 LLLAANATVTIAHSRTRD  194 (296)
T ss_pred             HHHhCCCEEEEECCCCCC
Confidence            999999999999 58863

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.35  E-value=0.0073  Score=58.01  Aligned_cols=75  Identities=19%  Similarity=0.150  Sum_probs=54.6

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhhhcccccceEE
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLLLNTLLFDSVI  438 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~~~~~~~~~~~  438 (493)
                      +++++|+|+|+||.|..++..|+..|+ +|++++++                   ..|++.+++.+...+.    .-++.
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np----~v~i~   94 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS----DIQVT   94 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC----CCEEE
Confidence            567899999999999999999999999 99999987                   5788888887776542    11222


Q ss_pred             EEe------ecccccCCceEEEEecc
Q 011136          439 VIR------ILLFTWHLKFFIAANII  458 (493)
Q Consensus       439 v~~------~l~~~~~~~~~i~~n~t  458 (493)
                      .+.      ++.+.+ .++++++.++
T Consensus        95 ~~~~~i~~~~~~~~~-~~~D~Vi~~~  119 (202)
T TIGR02356        95 ALKERVTAENLELLI-NNVDLVLDCT  119 (202)
T ss_pred             EehhcCCHHHHHHHH-hCCCEEEECC
Confidence            221      111223 5678888776

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=96.35  E-value=0.016  Score=62.75  Aligned_cols=96  Identities=18%  Similarity=0.127  Sum_probs=61.8

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccccc----CCceEEEEecc
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTW----HLKFFIAANII  458 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~----~~~~~i~~n~t  458 (493)
                      ++.|||.|-||.+++..|++.|++|+++||+.++++++.+.......      ++....++++-.    .++..|+.   
T Consensus         3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~------~i~~~~s~~e~v~~l~~~d~Iil~---   73 (470)
T PTZ00142          3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT------RVKGYHTLEELVNSLKKPRKVILL---   73 (470)
T ss_pred             EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC------cceecCCHHHHHhcCCCCCEEEEE---
Confidence            58899999999999999999999999999999999999764222110      111112222111    13433333   


Q ss_pred             ccCCc-hhhHhhhhhHHHHhhccceEeeecccc
Q 011136          459 HLGNH-LEWVTAAFNLFFYLTCNSYVVMEKTEI  490 (493)
Q Consensus       459 plG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (493)
                         ++ ++.+.+-+......+.++.+|+|-+..
T Consensus        74 ---v~~~~~v~~vi~~l~~~L~~g~iIID~gn~  103 (470)
T PTZ00142         74 ---IKAGEAVDETIDNLLPLLEKGDIIIDGGNE  103 (470)
T ss_pred             ---eCChHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence               33 344444444444445678999997754

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.34  E-value=0.032  Score=56.41  Aligned_cols=138  Identities=17%  Similarity=0.238  Sum_probs=86.7

Q ss_pred             EEeecC-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136          256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (493)
Q Consensus       256 ~~viG~-pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  329 (493)
                      .-++|+ |-+++.- ..-...++++|++.....++.    +++.+.++.+ .+++..|+-|-+|....    +|+    -
T Consensus        38 ii~vg~d~as~~Yv-~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~----~~~----~  108 (285)
T PRK10792         38 VVLVGSDPASQVYV-ASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAH----IDN----V  108 (285)
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH----H
Confidence            344664 3333333 233557889999987666643    4677777777 46789999999997532    221    1


Q ss_pred             HHhcceeeEEEec-----cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHH
Q 011136          330 KSIGAVNCIIRRQ-----SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAY  398 (493)
Q Consensus       330 ~~igAvNti~~~~-----~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~  398 (493)
                      +.+.+++.-.--+     +-|+++ |.    -.--.|++..|+..           +.+++||+++|+|-|. .|+-++.
T Consensus       109 ~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~vvViGrs~iVG~Pla~  177 (285)
T PRK10792        109 KVLERIHPDKDVDGFHPYNVGRLAQRIPLLRPCTPRGIMTLLERY-----------GIDTYGLNAVVVGASNIVGRPMSL  177 (285)
T ss_pred             HHHhccCcccccCccChhhHhHHhCCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCcccHHHHHH
Confidence            2222222221110     001211 11    12256777777652           2678999999999999 9999999


Q ss_pred             HHHhCCCeEEEEeCC
Q 011136          399 GAKAKGARVVIANRT  413 (493)
Q Consensus       399 ~L~~~g~~i~v~~R~  413 (493)
                      -|...|+.|+++.+.
T Consensus       178 lL~~~~atVtv~hs~  192 (285)
T PRK10792        178 ELLLAGCTVTVCHRF  192 (285)
T ss_pred             HHHHCCCeEEEEECC
Confidence            999999999999875

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.25  E-value=0.041  Score=55.48  Aligned_cols=139  Identities=21%  Similarity=0.280  Sum_probs=86.7

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  329 (493)
                      .-++| +|-+++.-- .-...++++|++.....++-    +++.+.++.+ .+++..|.-|-.|.-..    +|+    -
T Consensus        31 ii~vg~d~as~~Yv~-~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~----i~~----~  101 (279)
T PRK14178         31 TVIVGDDPASQMYVR-MKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKG----VDT----E  101 (279)
T ss_pred             EEEeCCChhHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCH----H
Confidence            34556 344443332 33456889999987766654    3677777777 56889999999997432    221    1


Q ss_pred             HHhcceeeEEEec-----cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecc-hHHHHHHH
Q 011136          330 KSIGAVNCIIRRQ-----SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAY  398 (493)
Q Consensus       330 ~~igAvNti~~~~-----~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaG-Gaara~~~  398 (493)
                      +.+.+++.-.--+     +-|+++ |.    -.--.|++.-|+..           +.+++|++|+|+|.+ -.||.++.
T Consensus       102 ~v~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~V~ViGrs~~vGrpla~  170 (279)
T PRK14178        102 RVIAAILPEKDVDGFHPLNLGRLVSGLPGFAPCTPNGIMTLLHEY-----------KISIAGKRAVVVGRSIDVGRPMAA  170 (279)
T ss_pred             HHHhccCcccCcccCChhhHHHHhCCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCccccHHHHH
Confidence            1222222221100     012221 11    11246677766652           267899999999999 59999999


Q ss_pred             HHHhCCCeEEEEeCCh
Q 011136          399 GAKAKGARVVIANRTY  414 (493)
Q Consensus       399 ~L~~~g~~i~v~~R~~  414 (493)
                      -|...|+.|+++.++.
T Consensus       171 lL~~~~atVtv~hs~t  186 (279)
T PRK14178        171 LLLNADATVTICHSKT  186 (279)
T ss_pred             HHHhCCCeeEEEecCh
Confidence            9999999999988754

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=96.24  E-value=0.12  Score=49.97  Aligned_cols=119  Identities=18%  Similarity=0.189  Sum_probs=75.9

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (493)
Q Consensus        26 Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (493)
                      +..-+...+.++....++.+.+.|+.++|+|.+--   +..+.++.+++..+.++++=.-     ..   -..++   ++
T Consensus        12 ~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~---~~~~~i~~l~~~~~~~~~iGaG-----TV---~~~~~---~~   77 (206)
T PRK09140         12 LIAILRGITPDEALAHVGALIEAGFRAIEIPLNSP---DPFDSIAALVKALGDRALIGAG-----TV---LSPEQ---VD   77 (206)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHcCCCcEEeEE-----ec---CCHHH---HH
Confidence            33458899999999999999999999999997542   2245677777666555443221     11   11222   35


Q ss_pred             HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       106 ~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      .+++.|++++=. =..+.+..+.   .+..+..++.+.|    ||  .    .+.++.+.|+|++|+
T Consensus        78 ~a~~aGA~fivs-p~~~~~v~~~---~~~~~~~~~~G~~----t~--~----E~~~A~~~Gad~vk~  130 (206)
T PRK09140         78 RLADAGGRLIVT-PNTDPEVIRR---AVALGMVVMPGVA----TP--T----EAFAALRAGAQALKL  130 (206)
T ss_pred             HHHHcCCCEEEC-CCCCHHHHHH---HHHCCCcEEcccC----CH--H----HHHHHHHcCCCEEEE
Confidence            677889998732 1112222222   2345777788877    33  2    346667799999997

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.24  E-value=0.024  Score=57.01  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=36.1

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      +|.|||.|-+|.+++.+|.+.|.+|++++|+.++.+++.+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~   41 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE   41 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            5889999999999999999999999999999888777654

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.23  E-value=0.02  Score=61.49  Aligned_cols=43  Identities=28%  Similarity=0.390  Sum_probs=38.3

Q ss_pred             EEEEEe-cchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          383 LFVVIG-AGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       383 ~vlvlG-aGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++.|+| .|++|.+++.+|.+.|.+|++++|+.+++++++..++
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~g   45 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELG   45 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcC
Confidence            689998 7999999999999999999999999988877777654

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=96.20  E-value=0.024  Score=52.57  Aligned_cols=50  Identities=28%  Similarity=0.382  Sum_probs=41.1

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      +++|++.|||.|.-|++-+..|.+.|++|.|..|..++..+.|+.-++.-
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v   51 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV   51 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee
Confidence            46899999999999999999999999999999999888888888766554

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.18  E-value=0.013  Score=60.79  Aligned_cols=36  Identities=39%  Similarity=0.536  Sum_probs=33.2

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~  414 (493)
                      ++.++|+|+|+||.|..++..|+..|+ +|++++++.
T Consensus        22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            567899999999999999999999999 999999873

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.18  E-value=0.012  Score=56.89  Aligned_cols=46  Identities=20%  Similarity=0.255  Sum_probs=38.5

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG-ESLTFLR  422 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~-~a~~la~  422 (493)
                      .+++|++|||+|+|.+|..-+..|.+.|++|+|++.+.. ..+++++
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~   51 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAE   51 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHH
Confidence            567899999999999999999999999999999998764 3344443

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=96.18  E-value=0.14  Score=48.57  Aligned_cols=130  Identities=17%  Similarity=0.100  Sum_probs=82.7

Q ss_pred             cEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHH
Q 011136           24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVD  102 (493)
Q Consensus        24 ~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (493)
                      +.||+.|-..+.++...-++.+.+. +|.+|+-..+....- .+.++.+++. .+.|++.+..... .+       .  .
T Consensus         1 ~~~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g-~~~i~~i~~~~~~~~i~~~~~v~~-~~-------~--~   68 (202)
T cd04726           1 PLLQVALDLLDLEEALELAKKVPDG-VDIIEAGTPLIKSEG-MEAVRALREAFPDKIIVADLKTAD-AG-------A--L   68 (202)
T ss_pred             CceEEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEEecc-cc-------H--H
Confidence            5689999999999999988887665 999999655542211 2467777765 4789998765421 11       1  2


Q ss_pred             HHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          103 VLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       103 ll~~~l~~~~dyIDIEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      .++.+.+.|++++-+-.....+..+++. ..++.+.++++..+.. .|  ..+..   + +...|+|++++
T Consensus        69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~-~t--~~e~~---~-~~~~~~d~v~~  132 (202)
T cd04726          69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGV-ED--PEKRA---K-LLKLGVDIVIL  132 (202)
T ss_pred             HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCC-CC--HHHHH---H-HHHCCCCEEEE
Confidence            3467788899999875544332223333 2234577888754421 12  22332   2 66679999998

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.17  E-value=0.0075  Score=61.97  Aligned_cols=89  Identities=22%  Similarity=0.085  Sum_probs=63.6

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEe-ecc----------
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIR-ILL----------  444 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~-~l~----------  444 (493)
                      .++.++.++|-|+ .|.|++++..|+..|++|++.+|+.++++++++.+.....    ..++++.. ++.          
T Consensus        31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~----~~~i~~~~lDLssl~SV~~fa~  106 (314)
T KOG1208|consen   31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKA----NQKIRVIQLDLSSLKSVRKFAE  106 (314)
T ss_pred             ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC----CCceEEEECCCCCHHHHHHHHH
Confidence            4567889999998 8999999999999999999999999999999998876221    11111110 111          


Q ss_pred             --cccCCceEEEEeccccCCchhhHhh
Q 011136          445 --FTWHLKFFIAANIIHLGNHLEWVTA  469 (493)
Q Consensus       445 --~~~~~~~~i~~n~tplG~~~~~~~~  469 (493)
                        ...-....+++|--.+..+|..+++
T Consensus       107 ~~~~~~~~ldvLInNAGV~~~~~~~t~  133 (314)
T KOG1208|consen  107 EFKKKEGPLDVLINNAGVMAPPFSLTK  133 (314)
T ss_pred             HHHhcCCCccEEEeCcccccCCcccCc
Confidence              1112446888887777777765554

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.16  E-value=0.012  Score=61.02  Aligned_cols=94  Identities=19%  Similarity=0.120  Sum_probs=61.4

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.||++.|||.|.+|++++..|...|++|.+++|+.....  ...++...            .++++-. ++.++++.
T Consensus       146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~--~~~~~~~~------------~~l~ell-~~aDiV~l  210 (333)
T PRK13243        146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA--EKELGAEY------------RPLEELL-RESDFVSL  210 (333)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh--HHHcCCEe------------cCHHHHH-hhCCEEEE
Confidence            457899999999999999999999999999999999865432  22221110            1233322 45677887


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|+.-.-..+...  ..|..+-++.++++-
T Consensus       211 ~lP~t~~T~~~i~~--~~~~~mk~ga~lIN~  239 (333)
T PRK13243        211 HVPLTKETYHMINE--ERLKLMKPTAILVNT  239 (333)
T ss_pred             eCCCChHHhhccCH--HHHhcCCCCeEEEEC
Confidence            78765544444322  345554556666654

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.15  E-value=0.021  Score=56.52  Aligned_cols=76  Identities=13%  Similarity=0.069  Sum_probs=52.3

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh-------------------HHHHHHHHHhhhhhhcccccceEE
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY-------------------GESLTFLRLMSWLLLNTLLFDSVI  438 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~-------------------~~a~~la~~~~~~~~~~~~~~~~~  438 (493)
                      +++++|+|+|+||.|..++..|+..|+ +++|++.+.                   .|++.+++.+...+.    .-++.
T Consensus        30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp----~v~i~  105 (245)
T PRK05690         30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINP----HIAIE  105 (245)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCC----CCEEE
Confidence            567899999999999999999999999 999986532                   466666666655442    11233


Q ss_pred             EEeec------ccccCCceEEEEeccc
Q 011136          439 VIRIL------LFTWHLKFFIAANIIH  459 (493)
Q Consensus       439 v~~~l------~~~~~~~~~i~~n~tp  459 (493)
                      .+...      ++.| .+++|+++++-
T Consensus       106 ~~~~~i~~~~~~~~~-~~~DiVi~~~D  131 (245)
T PRK05690        106 TINARLDDDELAALI-AGHDLVLDCTD  131 (245)
T ss_pred             EEeccCCHHHHHHHH-hcCCEEEecCC
Confidence            22211      1224 56889998873

>PRK07680 late competence protein ComER; Validated

Probab=96.13  E-value=0.02  Score=57.36  Aligned_cols=42  Identities=26%  Similarity=0.312  Sum_probs=37.2

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC----eEEEEeCChHHHHHHHHHh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA----RVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~----~i~v~~R~~~~a~~la~~~  424 (493)
                      ++.|||+|.+|.+++.+|.+.|.    +|++++|+.++++.+++.+
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~   47 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY   47 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc
Confidence            58899999999999999999883    7999999999998887654

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.12  E-value=0.014  Score=61.27  Aligned_cols=50  Identities=18%  Similarity=0.224  Sum_probs=42.4

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLL  428 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~  428 (493)
                      +++++|+|+|+||.|..++..|+..|+ +|++++.+                   ..|++.+++.+...+
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n  108 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ  108 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence            457899999999999999999999998 99998875                   467777777776555

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.11  E-value=0.014  Score=57.02  Aligned_cols=49  Identities=29%  Similarity=0.371  Sum_probs=42.8

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+..
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~   56 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG   56 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh
Confidence            467899999997 8899999999999999999999999888877766543

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.10  E-value=0.026  Score=56.74  Aligned_cols=88  Identities=14%  Similarity=0.075  Sum_probs=56.9

Q ss_pred             CEEEEEecchHHHHHHHHHHhCC----CeEEEEeCCh-HHHHHHHHHhhhhhhcccccceEEEEeeccc-ccCCceEEEE
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKG----ARVVIANRTY-GESLTFLRLMSWLLLNTLLFDSVIVIRILLF-TWHLKFFIAA  455 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g----~~i~v~~R~~-~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~-~~~~~~~i~~  455 (493)
                      .++.+||+|-||.+++..|.+.|    .+|+++||+. ++++.+++.++...           ..+..+ ....|..|++
T Consensus         4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~-----------~~~~~e~~~~aDvVila   72 (279)
T PRK07679          4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKG-----------THNKKELLTDANILFLA   72 (279)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceE-----------eCCHHHHHhcCCEEEEE
Confidence            47999999999999999999988    4899999986 46777776554211           111111 1124556666


Q ss_pred             eccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136          456 NIIHLGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       456 n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                            ++|..+.+.........-++.+|++
T Consensus        73 ------v~p~~~~~vl~~l~~~~~~~~liIs   97 (279)
T PRK07679         73 ------MKPKDVAEALIPFKEYIHNNQLIIS   97 (279)
T ss_pred             ------eCHHHHHHHHHHHHhhcCCCCEEEE
Confidence                  7777776554333222234566666

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.09  E-value=0.017  Score=56.82  Aligned_cols=50  Identities=16%  Similarity=0.197  Sum_probs=41.0

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh-------------------HHHHHHHHHhhhhh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY-------------------GESLTFLRLMSWLL  428 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~-------------------~~a~~la~~~~~~~  428 (493)
                      +++++|+|+|.||.|..++.+|+..|+ ++++++.+.                   .|++.+++.+...+
T Consensus         9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~in   78 (231)
T cd00755           9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDIN   78 (231)
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHC
Confidence            557899999999999999999999999 999987542                   47777777766555

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.09  E-value=0.012  Score=54.42  Aligned_cols=43  Identities=28%  Similarity=0.308  Sum_probs=36.3

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      .+++|++|+|+|+|.+|..-+..|.+.|++|+|++.+  ..+++.
T Consensus         9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~   51 (157)
T PRK06719          9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMK   51 (157)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHH
Confidence            5788999999999999999999999999999999644  344443

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=96.08  E-value=0.098  Score=51.13  Aligned_cols=153  Identities=18%  Similarity=0.124  Sum_probs=88.0

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh--CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 011136           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE--SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (493)
Q Consensus        34 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~  111 (493)
                      +.++...-++++.+.|+|++=+..-++.         ...+.  ...|++..++...-=|.-..+.+....-.+.+++.|
T Consensus        19 ~~~d~~~~~~~~~~~g~~av~v~~~~~~---------~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~G   89 (235)
T cd00958          19 GLEDPEETVKLAAEGGADAVALTKGIAR---------AYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLG   89 (235)
T ss_pred             cccCHHHHHHHHHhcCCCEEEeChHHHH---------hcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCC
Confidence            4455555556666678999987643222         11111  245777777632111110223345555688899999


Q ss_pred             CcEEEEEcccccc-------hhHHHhh-cCCCCcEEEEEcccCCC----CCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 011136          112 ADYIDVELQVARE-------FNDSIRG-KKPEKCKVIVSSHNYQY----TPSVEDLSNLVARIQASGADIVKFATTALDI  179 (493)
Q Consensus       112 ~dyIDIEl~~~~~-------~~~~l~~-~~~~~~kiI~S~H~f~~----tp~~~el~~~~~~~~~~gaDIvKia~~a~s~  179 (493)
                      ++.||+.++....       .+.++.. .++.+.++|+--|....    ..+.+++....+.+.+.|||++|+-. +.  
T Consensus        90 a~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~-~~--  166 (235)
T cd00958          90 ADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY-TG--  166 (235)
T ss_pred             CCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC-CC--
Confidence            9999998876432       2333442 34578999996553100    01234444447778889999999942 22  


Q ss_pred             hHHHHHHHHhccCCCCEEEE
Q 011136          180 TDVARVFQITVHSQVPIIGL  199 (493)
Q Consensus       180 ~D~~~l~~~~~~~~~PlIa~  199 (493)
                       |...+.++.+..+.|+++.
T Consensus       167 -~~~~~~~i~~~~~~pvv~~  185 (235)
T cd00958         167 -DAESFKEVVEGCPVPVVIA  185 (235)
T ss_pred             -CHHHHHHHHhcCCCCEEEe
Confidence             3444444555556787655

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.07  E-value=0.024  Score=57.66  Aligned_cols=40  Identities=15%  Similarity=0.174  Sum_probs=37.6

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++.|||.|-||.+++..|.+.|++|+++||+.++++++.+
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~   41 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE   41 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            5889999999999999999999999999999999998876

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK06046 alanine dehydrogenase; Validated

Probab=96.06  E-value=0.016  Score=59.86  Aligned_cols=72  Identities=19%  Similarity=0.124  Sum_probs=51.9

Q ss_pred             CCEEEEEecchHHHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~-~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      .+++.|+|+|+.|+..+.++.. .++ +|.|++|+.++++++++.++...-     ..+.+..+.++-. . .+|++.+|
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~l-~-aDiVv~aT  201 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVG-----CDVTVAEDIEEAC-D-CDILVTTT  201 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcC-----ceEEEeCCHHHHh-h-CCEEEEec
Confidence            4689999999999999998875 456 899999999999999988753210     1233333333322 2 57777888


Q ss_pred             c
Q 011136          459 H  459 (493)
Q Consensus       459 p  459 (493)
                      |
T Consensus       202 p  202 (326)
T PRK06046        202 P  202 (326)
T ss_pred             C
Confidence            7

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.04  E-value=0.025  Score=56.70  Aligned_cols=46  Identities=22%  Similarity=0.343  Sum_probs=41.7

Q ss_pred             CEEEEEecchHHHHHHHHHHhCC----CeEEEEeCChHHHHHHHHHhhhh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKG----ARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g----~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      .++.+||+|-||+|++..|.+.|    .+|+|.||+.++.+.+++.|+..
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~   51 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVV   51 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCc
Confidence            36889999999999999999999    28999999999999999988765

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.04  E-value=0.017  Score=57.95  Aligned_cols=78  Identities=15%  Similarity=0.139  Sum_probs=52.0

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhhhcccccceE
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLLLNTLLFDSV  437 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~~~~~~~~~~  437 (493)
                      .+++++|+|+|.||.|..++.+|+..|+ +|+|++.+                   ..|++.+++.+...+.    .-+|
T Consensus        27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP----~~~V  102 (268)
T PRK15116         27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINP----ECRV  102 (268)
T ss_pred             HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCC----CcEE
Confidence            3567899999999999999999999998 99997754                   2356666666655442    1133


Q ss_pred             EEEeec------ccccCCceEEEEeccc
Q 011136          438 IVIRIL------LFTWHLKFFIAANIIH  459 (493)
Q Consensus       438 ~v~~~l------~~~~~~~~~i~~n~tp  459 (493)
                      ..+.+.      ++.+..+++++++++-
T Consensus       103 ~~i~~~i~~e~~~~ll~~~~D~VIdaiD  130 (268)
T PRK15116        103 TVVDDFITPDNVAEYMSAGFSYVIDAID  130 (268)
T ss_pred             EEEecccChhhHHHHhcCCCCEEEEcCC
Confidence            333221      1223345778886654

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.04  E-value=0.015  Score=56.78  Aligned_cols=49  Identities=31%  Similarity=0.360  Sum_probs=43.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ++++|.++|.|+ ||.|++++..|++.|++|+++.|+.++.+++++.+..
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~   55 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGT   55 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            467899999998 7899999999999999999999999998888876643

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.03  E-value=0.042  Score=56.01  Aligned_cols=41  Identities=27%  Similarity=0.255  Sum_probs=37.9

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      ++.|||+|.+|.+++..|++.|.+|++++|+.++.+++.+.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~   43 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINAD   43 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc
Confidence            68999999999999999999999999999999998888764

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.016  Score=57.49  Aligned_cols=48  Identities=23%  Similarity=0.245  Sum_probs=42.8

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++++|.++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   53 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIK   53 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            467899999998 689999999999999999999999999888877664

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.00  E-value=0.029  Score=60.07  Aligned_cols=76  Identities=22%  Similarity=0.194  Sum_probs=49.2

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY-GESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~-~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                      +++|+++|+|+|++|.+++..|++.|++|++++++. +..++..+++.....      ++.. ....+....++++++++
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~------~~~~-~~~~~~~~~~~d~vv~~   75 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGI------ELVL-GEYPEEFLEGVDLVVVS   75 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCC------EEEe-CCcchhHhhcCCEEEEC
Confidence            458999999999999999999999999999999975 333333333322111      1111 11112233557778877


Q ss_pred             cccC
Q 011136          458 IHLG  461 (493)
Q Consensus       458 tplG  461 (493)
                      +.+.
T Consensus        76 ~g~~   79 (450)
T PRK14106         76 PGVP   79 (450)
T ss_pred             CCCC
Confidence            7553

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.00  E-value=0.076  Score=53.79  Aligned_cols=141  Identities=21%  Similarity=0.301  Sum_probs=87.2

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHH--hhhhhhhcH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDT  327 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~  327 (493)
                      .-++| +|-+.+.- ..-...++++|++.....++.    +++...++.+ .+++..|.-|-+|....+  ...++.+++
T Consensus        43 ii~vg~d~aS~~Yv-~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p  121 (287)
T PRK14176         43 TILVGDDPASKMYV-RLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDP  121 (287)
T ss_pred             EEEECCCcchHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCc
Confidence            44566 34333333 233557899999987776654    3677777777 567899999999975322  111222221


Q ss_pred             HHHHhcceeeEEEeccCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHH
Q 011136          328 VAKSIGAVNCIIRRQSDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK  401 (493)
Q Consensus       328 ~A~~igAvNti~~~~~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~  401 (493)
                      . +.+-..+..    +-|+++ |.    -.--.|++..|+..           +.+++||+|+|+|.|. .|+-++.-|.
T Consensus       122 ~-KDVDGl~~~----N~g~l~~g~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~vvViGrs~iVGkPla~lL~  185 (287)
T PRK14176        122 A-KDADGFHPY----NMGKLMIGDEGLVPCTPHGVIRALEEY-----------GVDIEGKNAVIVGHSNVVGKPMAAMLL  185 (287)
T ss_pred             c-ccccccChh----hhhhHhcCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCCcccHHHHHHHHH
Confidence            0 111111110    012221 11    11256777777652           2678999999999999 9999999999


Q ss_pred             hCCCeEEEEeCC
Q 011136          402 AKGARVVIANRT  413 (493)
Q Consensus       402 ~~g~~i~v~~R~  413 (493)
                      ..|+.|+++...
T Consensus       186 ~~~atVtv~hs~  197 (287)
T PRK14176        186 NRNATVSVCHVF  197 (287)
T ss_pred             HCCCEEEEEecc
Confidence            999999999853

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.99  E-value=0.04  Score=56.68  Aligned_cols=48  Identities=21%  Similarity=0.278  Sum_probs=43.5

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      ++++.|||+|.+|.++++.|...|.  +|++++++.++++..+.++....
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~   55 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV   55 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc
Confidence            5799999999999999999999996  89999999999999988887654

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.91  E-value=0.02  Score=58.42  Aligned_cols=49  Identities=33%  Similarity=0.411  Sum_probs=43.5

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .++++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++.+.+.
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~   59 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIR   59 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            4577899999997 789999999999999999999999999888877664

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.88  E-value=0.013  Score=63.58  Aligned_cols=46  Identities=22%  Similarity=0.278  Sum_probs=38.9

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ..+.+++++|+|.||+|++++..|.+.|++|++++|+..+..++.+
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~   56 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIE   56 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHH
Confidence            3467899999999999999999999999999999998766544433

>PRK06949 short chain dehydrogenase; Provisional

Probab=95.88  E-value=0.024  Score=55.29  Aligned_cols=49  Identities=31%  Similarity=0.381  Sum_probs=43.4

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .++++|+++|.|+ ||.|++++..|++.|++|+++.|+.++.+++.+.+.
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~   54 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIE   54 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            4577899999997 889999999999999999999999999888877654

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=95.87  E-value=0.034  Score=57.48  Aligned_cols=49  Identities=29%  Similarity=0.349  Sum_probs=42.2

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..++++++.|||.|-+|++++..|...|++|++.+|+.++..+.++..+
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G   61 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADG   61 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCC
Confidence            4567899999999999999999999999999999998777777766544

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=95.87  E-value=0.69  Score=45.91  Aligned_cols=146  Identities=16%  Similarity=0.177  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCC-CCCch-hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHH---HHHH
Q 011136           32 GESVDKMVVDMGKANASGADLVEIRLDGLK-NFNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVD---VLRL  106 (493)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~---ll~~  106 (493)
                      ..+++++.    .+.+.|||-|||.-++-. .+.|+ ..++.+++...+|+.+-+|+  .||-|--++++...   -++.
T Consensus         8 v~s~~~a~----~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRP--R~gdF~Ys~~E~~~M~~di~~   81 (248)
T PRK11572          8 CYSMECAL----TAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRP--RGGDFCYSDGEFAAMLEDIAT   81 (248)
T ss_pred             ECCHHHHH----HHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEec--CCCCCCCCHHHHHHHHHHHHH
Confidence            45555544    344679999999988643 34443 34666667779999999996  45666666655433   3556


Q ss_pred             HHHhCCcEEEE-----EcccccchhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHh
Q 011136          107 AMELGADYIDV-----ELQVAREFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTALDIT  180 (493)
Q Consensus       107 ~l~~~~dyIDI-----El~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~~  180 (493)
                      +.++|+|.+=+     |-..+.+..++++.. .++.++.  +|- |+.+++   ..+-++.+.++|+|=|==..-+.+..
T Consensus        82 ~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~-a~~~~vT--FHRAfD~~~d---~~~al~~l~~lG~~rILTSGg~~~a~  155 (248)
T PRK11572         82 VRELGFPGLVTGVLDVDGHVDMPRMRKIMAA-AGPLAVT--FHRAFDMCAN---PLNALKQLADLGVARILTSGQQQDAE  155 (248)
T ss_pred             HHHcCCCEEEEeeECCCCCcCHHHHHHHHHH-hcCCceE--EechhhccCC---HHHHHHHHHHcCCCEEECCCCCCCHH
Confidence            66778886654     455566677777754 3566664  565 888875   45678888888976555445556667


Q ss_pred             HHHHHHHHh
Q 011136          181 DVARVFQIT  189 (493)
Q Consensus       181 D~~~l~~~~  189 (493)
                      |.+..++-+
T Consensus       156 ~g~~~L~~l  164 (248)
T PRK11572        156 QGLSLIMEL  164 (248)
T ss_pred             HHHHHHHHH
Confidence            766666543

>PRK05872 short chain dehydrogenase; Provisional

Probab=95.84  E-value=0.021  Score=57.64  Aligned_cols=49  Identities=33%  Similarity=0.482  Sum_probs=44.0

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .++++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.++
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~   54 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELG   54 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence            3577899999997 889999999999999999999999999988887764

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.84  E-value=0.049  Score=53.06  Aligned_cols=95  Identities=17%  Similarity=0.081  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh----------HHHHHHHH
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY----------GESLTFLR  422 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~----------~~a~~la~  422 (493)
                      +.|...+++..+..       .+.+++|++++|.|.|.+|+.++..|.+.|. .|.|.+.+.          +..+...+
T Consensus         3 g~Gv~~~~~~~~~~-------~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~   75 (217)
T cd05211           3 GYGVVVAMKAAMKH-------LGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVA   75 (217)
T ss_pred             hhHHHHHHHHHHHH-------cCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHh
Confidence            56777777665432       1256889999999999999999999999998 788888776          44433333


Q ss_pred             HhhhhhhcccccceEEEEeecccccCCceEEEEeccccC
Q 011136          423 LMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLG  461 (493)
Q Consensus       423 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG  461 (493)
                      .......+.  .+   .+ +-++.|..+.+|++|+++=+
T Consensus        76 ~~~~~~~~~--~~---~~-~~~~l~~~~~DVlipaA~~~  108 (217)
T cd05211          76 LGGSARVKV--QD---YF-PGEAILGLDVDIFAPCALGN  108 (217)
T ss_pred             hCCccccCc--cc---cc-CcccceeccccEEeeccccC
Confidence            322221110  00   11 22345556778999887643

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=95.84  E-value=0.04  Score=55.73  Aligned_cols=96  Identities=15%  Similarity=0.031  Sum_probs=61.7

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH-hhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL-MSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~-~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      ++++|+|.|.+|++++..|...|..+.|++|+..++...+.. ++...-         ...+.....-.+.++++=+||+
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~---------~~~~~~~~~~~~aD~VivavPi   74 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDE---------LTVAGLAEAAAEADLVIVAVPI   74 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccc---------cccchhhhhcccCCEEEEeccH
Confidence            589999999999999999999999898999988776655543 332210         0011000011223455555666


Q ss_pred             CCchhhHhhhhhHHHHhhccceEeeecccc
Q 011136          461 GNHLEWVTAAFNLFFYLTCNSYVVMEKTEI  490 (493)
Q Consensus       461 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (493)
                      ....+.+.    .....+-++.+|||-|-+
T Consensus        75 ~~~~~~l~----~l~~~l~~g~iv~Dv~S~  100 (279)
T COG0287          75 EATEEVLK----ELAPHLKKGAIVTDVGSV  100 (279)
T ss_pred             HHHHHHHH----HhcccCCCCCEEEecccc
Confidence            65555553    334456789999997754

>PLN02256 arogenate dehydrogenase

Probab=95.84  E-value=0.039  Score=56.48  Aligned_cols=44  Identities=18%  Similarity=0.165  Sum_probs=36.0

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++.++.|||.|.+|.+++.+|.+.|.+|++++|+..  .+.+..++
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~--~~~a~~~g   78 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY--SDIAAELG   78 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH--HHHHHHcC
Confidence            467899999999999999999999989999999863  24444443

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.83  E-value=0.099  Score=52.95  Aligned_cols=140  Identities=19%  Similarity=0.272  Sum_probs=85.5

Q ss_pred             Eeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHh--hhhhhhcHH
Q 011136          257 GIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTV  328 (493)
Q Consensus       257 ~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~  328 (493)
                      -++| +|-+++.-- .--..++++|++.....++-    +++.+.++.+ .+++..|.-|-.|.-..+-  ..++.+++ 
T Consensus        38 i~vg~d~as~~Yv~-~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p-  115 (285)
T PRK14189         38 ILVGDNPASQVYVR-NKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAP-  115 (285)
T ss_pred             EEeCCCchHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCc-
Confidence            4555 343333332 33557899999987666653    4677777777 4578999999999753211  11222211 


Q ss_pred             HHHhcceeeEEEeccCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchH-HHHHHHHHHh
Q 011136          329 AKSIGAVNCIIRRQSDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGA-GKALAYGAKA  402 (493)
Q Consensus       329 A~~igAvNti~~~~~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGa-ara~~~~L~~  402 (493)
                      .+.+-..+..    +-|+++ |.    -.-..|++.-|+..           +.+++||+|+|+|.|+. |+-++.-|..
T Consensus       116 ~KDVDGl~~~----n~g~l~~~~~~~~PcTp~aii~lL~~~-----------~i~l~Gk~vvViGrs~iVGkPla~lL~~  180 (285)
T PRK14189        116 EKDVDGFHVA----NAGALMTGQPLFRPCTPYGVMKMLESI-----------GIPLRGAHAVVIGRSNIVGKPMAMLLLQ  180 (285)
T ss_pred             ccCcccCChh----hhhHhhCCCCCCcCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCCccHHHHHHHHHH
Confidence            1111111111    012221 11    11256677766652           26789999999999997 9999999999


Q ss_pred             CCCeEEEEeCC
Q 011136          403 KGARVVIANRT  413 (493)
Q Consensus       403 ~g~~i~v~~R~  413 (493)
                      .|+.|+++.+.
T Consensus       181 ~~atVt~~hs~  191 (285)
T PRK14189        181 AGATVTICHSK  191 (285)
T ss_pred             CCCEEEEecCC
Confidence            99999887653

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.83  E-value=0.034  Score=60.15  Aligned_cols=49  Identities=27%  Similarity=0.277  Sum_probs=38.6

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY-GESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~-~~a~~la~~~~  425 (493)
                      ..+++++|+|+|+|++|.+++..|.+.|++|+++++.. +....+.+.+.
T Consensus        12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~   61 (480)
T PRK01438         12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILE   61 (480)
T ss_pred             cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHH
Confidence            45678999999999999999999999999999998543 34444444443

>PRK07060 short chain dehydrogenase; Provisional

Probab=95.83  E-value=0.024  Score=54.72  Aligned_cols=49  Identities=33%  Similarity=0.384  Sum_probs=42.6

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .++++++++|.|+ |+.|+.++..|++.|++|++++|+.++.+++.+..+
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~   54 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETG   54 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC
Confidence            3467899999998 789999999999999999999999998888776543

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.82  E-value=0.024  Score=57.20  Aligned_cols=43  Identities=21%  Similarity=0.322  Sum_probs=38.8

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      ++|.|||+|-+|++++..|++.|++|++++|+.++.+++.+..
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~   44 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEI   44 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Confidence            4799999999999999999999999999999999988876543

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.80  E-value=0.024  Score=57.32  Aligned_cols=49  Identities=29%  Similarity=0.313  Sum_probs=43.4

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+.+++++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus        36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~   85 (293)
T PRK05866         36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRIT   85 (293)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            4467899999997 889999999999999999999999999888877664

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=95.80  E-value=0.25  Score=50.03  Aligned_cols=84  Identities=26%  Similarity=0.383  Sum_probs=59.0

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC----------CCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCC
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDG----------LKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQY   93 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~----------l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~   93 (493)
                      .+.++|.+.+.++...-++.+.+.|+|+||+-+-.          ..+.+. .+.++.+++..++|+.+-++..      
T Consensus        91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~------  164 (296)
T cd04740          91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN------  164 (296)
T ss_pred             cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC------
Confidence            36689999999999999988888899999995421          111110 2345566666689998877631      


Q ss_pred             CCCHHHHHHHHHHHHHhCCcEEEE
Q 011136           94 DGDENERVDVLRLAMELGADYIDV  117 (493)
Q Consensus        94 ~~~~~~~~~ll~~~l~~~~dyIDI  117 (493)
                         .++-.++.+.+.+.|+|+|++
T Consensus       165 ---~~~~~~~a~~~~~~G~d~i~~  185 (296)
T cd04740         165 ---VTDIVEIARAAEEAGADGLTL  185 (296)
T ss_pred             ---chhHHHHHHHHHHcCCCEEEE
Confidence               124556777788889999877

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.78  E-value=0.025  Score=56.15  Aligned_cols=49  Identities=29%  Similarity=0.396  Sum_probs=43.4

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus         6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   55 (278)
T PRK08277          6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIK   55 (278)
T ss_pred             eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            3567899999997 889999999999999999999999988888877664

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=95.77  E-value=0.051  Score=53.26  Aligned_cols=94  Identities=21%  Similarity=0.171  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEE-EEeC----------ChHHHHHHHH
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANR----------TYGESLTFLR  422 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~-v~~R----------~~~~a~~la~  422 (493)
                      +.|...+++..+..       ....+++++++|.|.|.+|+.++..|.+.|.+|+ |.+.          +.++..++.+
T Consensus        11 g~Gv~~~~~~~~~~-------~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~   83 (227)
T cd01076          11 GRGVAYATREALKK-------LGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKK   83 (227)
T ss_pred             hHHHHHHHHHHHHh-------cCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHH
Confidence            67777777765542       1246789999999999999999999999999766 8777          6666665555


Q ss_pred             HhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          423 LMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       423 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      ..+...    .++....+ +.++-|..+.+|++|+++
T Consensus        84 ~~g~l~----~~~~~~~~-~~~~i~~~~~Dvlip~a~  115 (227)
T cd01076          84 EHGSVL----GFPGAERI-TNEELLELDCDILIPAAL  115 (227)
T ss_pred             hcCCcc----cCCCceec-CCccceeecccEEEecCc
Confidence            433211    01111111 234556677889998873

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.77  E-value=0.0054  Score=64.50  Aligned_cols=74  Identities=19%  Similarity=0.124  Sum_probs=45.9

Q ss_pred             EEEEecchHHHHHHHHHHhCC-C-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          384 FVVIGAGGAGKALAYGAKAKG-A-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g-~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      |+|+|+|.+|++++..|.+.+ . +|+|.+|+.++++++++.+..........|. .=.+++.... .+.++++|+.|
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~l~~~~-~~~dvVin~~g   76 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDV-NDPESLAELL-RGCDVVINCAG   76 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--T-TTHHHHHHHH-TTSSEEEE-SS
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEec-CCHHHHHHHH-hcCCEEEECCc
Confidence            689999999999999999987 4 8999999999999998765322211111110 0001122222 56789999875

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.76  E-value=0.023  Score=55.44  Aligned_cols=49  Identities=29%  Similarity=0.371  Sum_probs=42.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++|++||.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+..
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~   55 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQ   55 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHh
Confidence            456899999997 7799999999999999999999999888888776643

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.75  E-value=0.056  Score=55.93  Aligned_cols=45  Identities=33%  Similarity=0.479  Sum_probs=39.3

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|++|+|+|+||.|..++..++..|++|+.+.|+.+|. ++|++++
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~-e~a~~lG  210 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL-ELAKKLG  210 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH-HHHHHhC
Confidence            48899999999999999998888999999999999886 4556655

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.75  E-value=0.027  Score=57.46  Aligned_cols=93  Identities=14%  Similarity=-0.028  Sum_probs=59.5

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      .+++.|||+|.+|.+++.+|.+.|.  +|++++|+.++.+.+.+ .+..         ..+..+.++ +..+.++++.+|
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~-~g~~---------~~~~~~~~~-~~~~aDvViiav   74 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE-LGLG---------DRVTTSAAE-AVKGADLVILCV   74 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-CCCC---------ceecCCHHH-HhcCCCEEEECC
Confidence            3689999999999999999999985  89999999887665432 2210         011122221 224567888888


Q ss_pred             ccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          459 HLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       459 plG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      |.+...+.+.    ......-++.+|+|-+
T Consensus        75 p~~~~~~v~~----~l~~~l~~~~iv~dvg  100 (307)
T PRK07502         75 PVGASGAVAA----EIAPHLKPGAIVTDVG  100 (307)
T ss_pred             CHHHHHHHHH----HHHhhCCCCCEEEeCc
Confidence            8766544332    1112223567888754

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=95.73  E-value=0.076  Score=53.40  Aligned_cols=52  Identities=35%  Similarity=0.384  Sum_probs=45.3

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      ..+.||.++|-|+ -|.|++++..|+++|++|+|.+|+.++.++.++.+....
T Consensus         4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~   56 (270)
T KOG0725|consen    4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLG   56 (270)
T ss_pred             ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence            4578999999987 679999999999999999999999999988887766543

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.72  E-value=0.025  Score=55.42  Aligned_cols=48  Identities=31%  Similarity=0.362  Sum_probs=42.9

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|+++.|+.++.+++++.+..
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~   53 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIAR   53 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            56899999997 7899999999999999999999999998888877653

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.72  E-value=0.025  Score=54.99  Aligned_cols=47  Identities=11%  Similarity=0.210  Sum_probs=41.7

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++|.++|.|+ +|.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~   50 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCS   50 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence            46889999998 669999999999999999999999999888877654

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.70  E-value=0.026  Score=54.63  Aligned_cols=47  Identities=34%  Similarity=0.484  Sum_probs=41.1

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++++++|.|+ |+.|++++..|.+.|++|+++.|+.++.+.+...+.
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~   50 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEIL   50 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence            45789999997 789999999999999999999999988887766554

>PRK06057 short chain dehydrogenase; Provisional

Probab=95.70  E-value=0.025  Score=55.34  Aligned_cols=47  Identities=30%  Similarity=0.363  Sum_probs=41.5

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++++++|.|+ ||.|++++..|++.|++|+++.|+..+.+++.+.+.
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~   52 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG   52 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC
Confidence            56899999999 889999999999999999999999888777766553

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=95.68  E-value=0.067  Score=51.61  Aligned_cols=41  Identities=27%  Similarity=0.408  Sum_probs=35.4

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      +++.|+|+|-+|.+++..|...|++|.|.+|+.+++.+.+.
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a   42 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAA   42 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHH
Confidence            47899999999999999999999999999887666665554

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=95.67  E-value=0.027  Score=55.40  Aligned_cols=46  Identities=28%  Similarity=0.458  Sum_probs=41.2

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++.+.+
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   50 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF   50 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            46889999997 78999999999999999999999999988887665

>PRK08265 short chain dehydrogenase; Provisional

Probab=95.66  E-value=0.027  Score=55.54  Aligned_cols=46  Identities=33%  Similarity=0.376  Sum_probs=41.3

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   50 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL   50 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            56889999997 88999999999999999999999998888887765

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.65  E-value=0.026  Score=58.15  Aligned_cols=41  Identities=29%  Similarity=0.340  Sum_probs=36.7

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++|.|||+|-||+.++..++..|++|++++++++..+.+.+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~   48 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRA   48 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence            68999999999999999999999999999999887666544

>PRK05717 oxidoreductase; Validated

Probab=95.65  E-value=0.03  Score=54.75  Aligned_cols=48  Identities=25%  Similarity=0.322  Sum_probs=42.1

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      ..++||+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+
T Consensus         6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~   54 (255)
T PRK05717          6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL   54 (255)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc
Confidence            5678999999997 78999999999999999999999988887776654

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.64  E-value=0.028  Score=54.86  Aligned_cols=48  Identities=31%  Similarity=0.416  Sum_probs=42.3

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|+++.|+.++.+++.+.+..
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~   52 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRA   52 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            45789999997 7899999999999999999999999998888776643

>PLN02780 ketoreductase/ oxidoreductase

Probab=95.62  E-value=0.025  Score=58.12  Aligned_cols=47  Identities=23%  Similarity=0.330  Sum_probs=42.5

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .|+.++|.|| ||.|++++..|++.|++|++++|+.++.+++++++..
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~   99 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQS   99 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Confidence            5789999997 7899999999999999999999999999998887653

>PRK06125 short chain dehydrogenase; Provisional

Probab=95.61  E-value=0.03  Score=54.89  Aligned_cols=48  Identities=27%  Similarity=0.328  Sum_probs=42.3

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~   52 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLR   52 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence            356899999998 789999999999999999999999998888776654

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=95.61  E-value=0.033  Score=57.28  Aligned_cols=91  Identities=18%  Similarity=0.201  Sum_probs=59.0

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+++|++.|||.|-+|++++..|...|++|++++|. .++.+.++..+...            .++++-+ ++.++++.
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~-~~s~~~A~~~G~~v------------~sl~Eaa-k~ADVV~l   77 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRP-GKSFEVAKADGFEV------------MSVSEAV-RTAQVVQM   77 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECc-chhhHHHHHcCCEE------------CCHHHHH-hcCCEEEE
Confidence            4578999999999999999999999999999999986 44444444333211            1333333 55677887


Q ss_pred             ccccCCchhhHhhhhh-HHHHhhccceEee
Q 011136          457 IIHLGNHLEWVTAAFN-LFFYLTCNSYVVM  485 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~-~~~~~~~~~~~~~  485 (493)
                      .+|.--+    ..-++ ..+..+-++.+++
T Consensus        78 lLPd~~t----~~V~~~eil~~MK~GaiL~  103 (335)
T PRK13403         78 LLPDEQQ----AHVYKAEVEENLREGQMLL  103 (335)
T ss_pred             eCCChHH----HHHHHHHHHhcCCCCCEEE
Confidence            7776322    22333 2344444455553

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.60  E-value=0.032  Score=54.13  Aligned_cols=47  Identities=30%  Similarity=0.417  Sum_probs=40.9

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+.+.+.+.
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~   51 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIV   51 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            56889999998 899999999999999999999999887777766543

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.60  E-value=0.049  Score=55.41  Aligned_cols=40  Identities=23%  Similarity=0.197  Sum_probs=37.1

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      +|.|||.|-||.+++..|.+.|.+|+++||++++.+++.+
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~   41 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE   41 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence            5889999999999999999999999999999999988754

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=95.59  E-value=0.042  Score=59.55  Aligned_cols=40  Identities=33%  Similarity=0.336  Sum_probs=37.7

Q ss_pred             EEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      +-|||.|-||.+++..|++.|++|+++||+.++++++.+.
T Consensus         2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~   41 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE   41 (467)
T ss_pred             EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh
Confidence            6789999999999999999999999999999999999875

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK09242 tropinone reductase; Provisional

Probab=95.59  E-value=0.031  Score=54.64  Aligned_cols=50  Identities=26%  Similarity=0.234  Sum_probs=43.9

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      +.+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++.+.+..
T Consensus         5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~   55 (257)
T PRK09242          5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAE   55 (257)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh
Confidence            4567899999997 7899999999999999999999999998888776643

>PRK07574 formate dehydrogenase; Provisional

Probab=95.57  E-value=0.028  Score=59.38  Aligned_cols=96  Identities=11%  Similarity=-0.018  Sum_probs=64.8

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|+..|++|..++|+.... ...+.++...           ..++++-+ ++.++++.
T Consensus       188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~-~~~~~~g~~~-----------~~~l~ell-~~aDvV~l  254 (385)
T PRK07574        188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPE-EVEQELGLTY-----------HVSFDSLV-SVCDVVTI  254 (385)
T ss_pred             eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCch-hhHhhcCcee-----------cCCHHHHh-hcCCEEEE
Confidence            45789999999999999999999999999999999986332 2222222111           12344434 56788888


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ..|+.-.-..+..  -..|..+-++.++.+-
T Consensus       255 ~lPlt~~T~~li~--~~~l~~mk~ga~lIN~  283 (385)
T PRK07574        255 HCPLHPETEHLFD--ADVLSRMKRGSYLVNT  283 (385)
T ss_pred             cCCCCHHHHHHhC--HHHHhcCCCCcEEEEC
Confidence            8888766555542  2445555566666653

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.56  E-value=0.047  Score=59.50  Aligned_cols=42  Identities=21%  Similarity=0.200  Sum_probs=39.2

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      .++-+||-|-||+.++..|.+.|++|+|+|||.++++++.+.
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~   48 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER   48 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHh
Confidence            368999999999999999999999999999999999999874

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=95.55  E-value=0.028  Score=57.15  Aligned_cols=40  Identities=15%  Similarity=0.226  Sum_probs=37.5

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++.|||.|-||.+++..|.+.|++|+++||+.++.+++.+
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~   42 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD   42 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH
Confidence            6899999999999999999999999999999999988765

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=95.53  E-value=0.76  Score=46.32  Aligned_cols=210  Identities=14%  Similarity=0.070  Sum_probs=122.4

Q ss_pred             HHHHHHHHHhhhhcCCCEEEEEecCC-------CCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 011136           35 VDKMVVDMGKANASGADLVEIRLDGL-------KNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVDVLRL  106 (493)
Q Consensus        35 ~~e~~~~~~~~~~~~aD~vElRlD~l-------~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~  106 (493)
                      .++.+.-++.+.+.|+|.+|+=.-.-       ...++.+.++.+++. .+.++...+|..+.-|....+.+-..+.++.
T Consensus        20 ~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~   99 (275)
T cd07937          20 TEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEK   99 (275)
T ss_pred             HHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHH
Confidence            34444445566678999999964320       122334556666643 3578888888765555444455556678888


Q ss_pred             HHHhCCcEEEEEccccc-chh-HHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CCHhH
Q 011136          107 AMELGADYIDVELQVAR-EFN-DSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTA--LDITD  181 (493)
Q Consensus       107 ~l~~~~dyIDIEl~~~~-~~~-~~l~~~~~~~~kiI~S~H~-f~~tp~~~el~~~~~~~~~~gaDIvKia~~a--~s~~D  181 (493)
                      +.+.|+++|-|-....+ +.+ +.+..++..+.++..+... +....+.+.+.+..+++.+.|+|.+-++=+.  -+|++
T Consensus       100 ~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~  179 (275)
T cd07937         100 AAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYA  179 (275)
T ss_pred             HHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHH
Confidence            99999999888554432 122 2222344556777765543 2222356789999999999999999888444  35788


Q ss_pred             HHHHHHHhccC-CCCEEEEecCC--cchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136          182 VARVFQITVHS-QVPIIGLVMGE--RGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (493)
Q Consensus       182 ~~~l~~~~~~~-~~PlIa~~MG~--~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~  245 (493)
                      +.++.+.+.+. +.|+-.-+=-.  ++...-+..-..|....-+++.+- .-..|+.+.+++...++
T Consensus       180 v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~Gl-G~~aGN~~~E~l~~~L~  245 (275)
T cd07937         180 AYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPL-SGGTSQPSTESMVAALR  245 (275)
T ss_pred             HHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccc-cCCcCChhHHHHHHHHH
Confidence            88888776542 44443322111  222222222223433322333321 23478888877665554

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.032  Score=53.92  Aligned_cols=48  Identities=27%  Similarity=0.365  Sum_probs=42.1

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++++++++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~   51 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIV   51 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHH
Confidence            356899999997 789999999999999999999999998888777654

>PRK06139 short chain dehydrogenase; Provisional

Probab=95.52  E-value=0.031  Score=57.74  Aligned_cols=49  Identities=31%  Similarity=0.377  Sum_probs=43.4

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++|.+||.|+ ||.|++++..|++.|++|+++.|+.++.+++++.+..
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~   53 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA   53 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence            356899999998 8899999999999999999999999999888876653

>PRK09186 flagellin modification protein A; Provisional

Probab=95.51  E-value=0.032  Score=54.28  Aligned_cols=46  Identities=26%  Similarity=0.321  Sum_probs=41.0

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++++.+.
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~   49 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLG   49 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHH
Confidence            4789999997 789999999999999999999999999888877653

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.51  E-value=0.034  Score=54.22  Aligned_cols=48  Identities=31%  Similarity=0.511  Sum_probs=41.8

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~   52 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIR   52 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence            356899999998 789999999999999999999999988877776554

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.49  E-value=0.034  Score=54.63  Aligned_cols=49  Identities=27%  Similarity=0.236  Sum_probs=42.8

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ++++|.++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+..
T Consensus         5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   54 (265)
T PRK07062          5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLRE   54 (265)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh
Confidence            467899999998 6799999999999999999999999888887766543

>PRK06196 oxidoreductase; Provisional

Probab=95.48  E-value=0.033  Score=56.63  Aligned_cols=48  Identities=25%  Similarity=0.331  Sum_probs=42.2

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++.+.
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~   71 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID   71 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh
Confidence            467899999998 789999999999999999999999998888776543

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=95.48  E-value=0.16  Score=48.56  Aligned_cols=130  Identities=19%  Similarity=0.153  Sum_probs=86.2

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDV  103 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (493)
                      ++||.+-..+.++...-++.+ ..|.|++|+-.-++..+- .+.++.+++.. +.+++++...- +.|       .+  .
T Consensus         1 ~l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d~~-------~~--~   68 (206)
T TIGR03128         1 KLQLALDLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-DAG-------EY--E   68 (206)
T ss_pred             CeEEEecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-cch-------HH--H
Confidence            478889999999999999887 889999999533332221 35677777653 56777776542 111       11  3


Q ss_pred             HHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          104 LRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       104 l~~~l~~~~dyIDIEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      .+.+.+.|+|+|-+-...+...+.++. ..++.+.++++..++.    .  +..+....+.++|+|++|+
T Consensus        69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~----~--t~~~~~~~~~~~g~d~v~~  132 (206)
T TIGR03128        69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINV----K--DKVKRAKELKELGADYIGV  132 (206)
T ss_pred             HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCC----C--ChHHHHHHHHHcCCCEEEE
Confidence            566788899999877665433233333 2345688999876542    1  2345556667789999987

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.47  E-value=0.028  Score=53.88  Aligned_cols=76  Identities=17%  Similarity=0.086  Sum_probs=52.9

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhhhcccccceEE
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLLLNTLLFDSVI  438 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~~~~~~~~~~~  438 (493)
                      +++++|+|+|+||.|..++..|+..|+ +|++++.+                   ..|++.+++.+...+..    -+++
T Consensus        19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~----v~i~   94 (197)
T cd01492          19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPR----VKVS   94 (197)
T ss_pred             HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCC----CEEE
Confidence            557899999999999999999999999 99998643                   24677777776665531    1222


Q ss_pred             EEee-----cccccCCceEEEEeccc
Q 011136          439 VIRI-----LLFTWHLKFFIAANIIH  459 (493)
Q Consensus       439 v~~~-----l~~~~~~~~~i~~n~tp  459 (493)
                      ....     ..+.| .++++++.++.
T Consensus        95 ~~~~~~~~~~~~~~-~~~dvVi~~~~  119 (197)
T cd01492          95 VDTDDISEKPEEFF-SQFDVVVATEL  119 (197)
T ss_pred             EEecCccccHHHHH-hCCCEEEECCC
Confidence            2221     11234 67888887764

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.47  E-value=0.022  Score=55.66  Aligned_cols=50  Identities=20%  Similarity=0.232  Sum_probs=40.8

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC-------------------ChHHHHHHHHHhhhhh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR-------------------TYGESLTFLRLMSWLL  428 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R-------------------~~~~a~~la~~~~~~~  428 (493)
                      +.+++|+|+|+||.|..++..|+..|+ ++++++.                   -..|++.+++.+...+
T Consensus        19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n   88 (228)
T cd00757          19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN   88 (228)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC
Confidence            557899999999999999999999999 9998842                   2457777777776655

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02928 oxidoreductase family protein

Probab=95.46  E-value=0.03  Score=58.41  Aligned_cols=105  Identities=15%  Similarity=0.040  Sum_probs=61.0

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.||++.|||.|.+|+.++..|..+|++|+.++|+..+.......+...... ...+...-..++++-+ ++.++++.
T Consensus       155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~ell-~~aDiVvl  232 (347)
T PLN02928        155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVD-DLVDEKGGHEDIYEFA-GEADIVVL  232 (347)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhcccccccc-ccccccCcccCHHHHH-hhCCEEEE
Confidence            357799999999999999999999999999999999854322110000000000 0000000113454444 56789999


Q ss_pred             ccccCCchhhHhhhhhHH-HHhhccceEeee
Q 011136          457 IIHLGNHLEWVTAAFNLF-FYLTCNSYVVME  486 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~-~~~~~~~~~~~~  486 (493)
                      ++|+.-.-..+.   +.. |..+-++.++.+
T Consensus       233 ~lPlt~~T~~li---~~~~l~~Mk~ga~lIN  260 (347)
T PLN02928        233 CCTLTKETAGIV---NDEFLSSMKKGALLVN  260 (347)
T ss_pred             CCCCChHhhccc---CHHHHhcCCCCeEEEE
Confidence            999875544443   333 333333555544

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=95.46  E-value=0.027  Score=56.84  Aligned_cols=40  Identities=15%  Similarity=0.142  Sum_probs=36.5

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++.|||.|-+|.+++..|++.|++|+++||+.++.+.+.+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~   40 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLA   40 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH
Confidence            3789999999999999999999999999999999888764

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.45  E-value=0.039  Score=56.74  Aligned_cols=42  Identities=31%  Similarity=0.258  Sum_probs=38.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      .++.|||+|.+|.+++..|.+.|.+|++++|+.++++.+.+.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~   46 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAE   46 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh
Confidence            479999999999999999999999999999999998888753

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=95.45  E-value=0.43  Score=46.62  Aligned_cols=133  Identities=19%  Similarity=0.209  Sum_probs=82.7

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEE--EEEecCCCCCCchhHHHHHH---hhCCCcEEEEeccCCCCCCC--CCCHHHHHHHH
Q 011136           32 GESVDKMVVDMGKANASGADLV--EIRLDGLKNFNPRENIKTLI---KESPVPTLFTYRPIWEGGQY--DGDENERVDVL  104 (493)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~aD~v--ElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~--~~~~~~~~~ll  104 (493)
                      .++......+++++.+.|+|.+  .+|.-.+......+.++.++   +...+|+|+....  +|...  ..+.++.....
T Consensus        72 ~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~--~g~~~~~~~~~~~i~~~~  149 (235)
T cd00958          72 DDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYP--RGPAVKNEKDPDLIAYAA  149 (235)
T ss_pred             CCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEec--cCCcccCccCHHHHHHHH
Confidence            4677777778888889999988  77765432111122344444   3468999987654  22221  12333333346


Q ss_pred             HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 011136          105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV  170 (493)
Q Consensus       105 ~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIv  170 (493)
                      +.+.+.|+|||=+-...+.+.++++...  ....|+++=..  +..+.++..+.++++.+.|++-+
T Consensus       150 ~~a~~~GaD~Ik~~~~~~~~~~~~i~~~--~~~pvv~~GG~--~~~~~~~~l~~~~~~~~~Ga~gv  211 (235)
T cd00958         150 RIGAELGADIVKTKYTGDAESFKEVVEG--CPVPVVIAGGP--KKDSEEEFLKMVYDAMEAGAAGV  211 (235)
T ss_pred             HHHHHHCCCEEEecCCCCHHHHHHHHhc--CCCCEEEeCCC--CCCCHHHHHHHHHHHHHcCCcEE
Confidence            6788899999999654444566666543  34456665221  22356678889999999999855

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=95.44  E-value=0.032  Score=54.85  Aligned_cols=45  Identities=27%  Similarity=0.429  Sum_probs=39.9

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~   48 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA   48 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh
Confidence            45789999997 7899999999999999999999999888887654

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.43  E-value=0.025  Score=55.34  Aligned_cols=75  Identities=13%  Similarity=0.057  Sum_probs=50.4

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCC---C-eEEEEeC-ChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKG---A-RVVIANR-TYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g---~-~i~v~~R-~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      ..++.|||+|.+|++++..|...|   . +|++++| +.++++++++.++...           ..+.++-. .+.++++
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~DiVi   71 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVST-----------TTDWKQHV-TSVDTIV   71 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEE-----------eCChHHHH-hcCCEEE
Confidence            468999999999999999998876   3 3888998 4788888887654211           12221112 3456777


Q ss_pred             eccccCCchhhH
Q 011136          456 NIIHLGNHLEWV  467 (493)
Q Consensus       456 n~tplG~~~~~~  467 (493)
                      .+||-..+.+.+
T Consensus        72 iavp~~~~~~v~   83 (245)
T PRK07634         72 LAMPPSAHEELL   83 (245)
T ss_pred             EecCHHHHHHHH
Confidence            777766554444

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.43  E-value=0.036  Score=54.03  Aligned_cols=47  Identities=38%  Similarity=0.450  Sum_probs=41.3

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +.+|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   50 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEID   50 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence            35789999997 789999999999999999999999988888877654

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.43  E-value=0.039  Score=53.89  Aligned_cols=49  Identities=24%  Similarity=0.356  Sum_probs=42.9

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus         7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~   56 (256)
T PRK06124          7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALR   56 (256)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH
Confidence            4577999999998 679999999999999999999999888888777654

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.42  E-value=0.038  Score=54.62  Aligned_cols=47  Identities=30%  Similarity=0.335  Sum_probs=41.2

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++++++|.|+ ||.|++++..|.+.|++|.++.|+.++.+++.+.+.
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~   50 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG   50 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc
Confidence            45789999998 889999999999999999999999999888776554

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.41  E-value=0.044  Score=58.36  Aligned_cols=48  Identities=31%  Similarity=0.418  Sum_probs=41.1

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+.|++|+|+|+|..|+.++..++..|++|+++++++.|++. |..++
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~-A~~~G  245 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQ-AAMEG  245 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHH-HHhcC
Confidence            4567999999999999999999999999999999999888654 44444

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK08507 prephenate dehydrogenase; Validated

Probab=95.40  E-value=0.065  Score=53.74  Aligned_cols=39  Identities=26%  Similarity=0.210  Sum_probs=34.5

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFL  421 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la  421 (493)
                      ++.|||.|.+|.+++..|.+.|.  +|++++|+.++.+.+.
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~   42 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL   42 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence            58999999999999999999985  7999999988877653

>PLN02688 pyrroline-5-carboxylate reductase

Probab=95.39  E-value=0.068  Score=53.09  Aligned_cols=40  Identities=30%  Similarity=0.358  Sum_probs=35.4

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC----eEEEE-eCChHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA----RVVIA-NRTYGESLTFLR  422 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~----~i~v~-~R~~~~a~~la~  422 (493)
                      ++.+||.|.||.+++..|.+.|+    +|+++ ||+.++++.+.+
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~   46 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS   46 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH
Confidence            58899999999999999999986    89999 999999877654

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.38  E-value=0.091  Score=53.92  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=37.2

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      ++.|||+|.+|.+++..|.+.|.+|++++|+.+.++.+.+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~   42 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK   42 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc
Confidence            58999999999999999999999999999999888877663

>PRK08328 hypothetical protein; Provisional

Probab=95.38  E-value=0.019  Score=56.32  Aligned_cols=37  Identities=30%  Similarity=0.525  Sum_probs=33.0

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChH
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYG  415 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~  415 (493)
                      +++++|+|+|+||.|..++..|+..|+ +|++++.+.-
T Consensus        25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v   62 (231)
T PRK08328         25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP   62 (231)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            557899999999999999999999999 9999986543

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=95.37  E-value=0.036  Score=56.06  Aligned_cols=41  Identities=20%  Similarity=0.215  Sum_probs=37.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .++.|||.|-+|.+++..|.+.|++|++++|+.++.+++.+
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~   43 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA   43 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH
Confidence            36899999999999999999999999999999998887654

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.37  E-value=0.05  Score=55.32  Aligned_cols=40  Identities=20%  Similarity=0.142  Sum_probs=36.7

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++.+||.|-||.+++..|.+.|.+|+++||+.++++.+.+
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~   41 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK   41 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence            5889999999999999999999999999999999888754

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=95.35  E-value=0.069  Score=45.99  Aligned_cols=88  Identities=15%  Similarity=0.035  Sum_probs=60.1

Q ss_pred             EEEEEecchHHHHHHHHHHhCC--Ce-EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccC-CceEEEEecc
Q 011136          383 LFVVIGAGGAGKALAYGAKAKG--AR-VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWH-LKFFIAANII  458 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g--~~-i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~i~~n~t  458 (493)
                      ++.|||+|..|+.-..++....  .+ +.|++++.++++..++.++...+           .++++-+. ++.++++-+|
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~-----------~~~~~ll~~~~~D~V~I~t   70 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVY-----------TDLEELLADEDVDAVIIAT   70 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEE-----------SSHHHHHHHTTESEEEEES
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccch-----------hHHHHHHHhhcCCEEEEec
Confidence            5899999999999988888773  35 45999999999999888775532           22221111 2566777778


Q ss_pred             ccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          459 HLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       459 plG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      |-..|.+.+.     .+.. ..-.|++||
T Consensus        71 p~~~h~~~~~-----~~l~-~g~~v~~EK   93 (120)
T PF01408_consen   71 PPSSHAEIAK-----KALE-AGKHVLVEK   93 (120)
T ss_dssp             SGGGHHHHHH-----HHHH-TTSEEEEES
T ss_pred             CCcchHHHHH-----HHHH-cCCEEEEEc
Confidence            7777766654     2222 333677776

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=95.34  E-value=0.045  Score=49.57  Aligned_cols=45  Identities=27%  Similarity=0.457  Sum_probs=39.2

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCC-eEEEEeCC--hHHHHHHHHHhhh
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRT--YGESLTFLRLMSW  426 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~-~i~v~~R~--~~~a~~la~~~~~  426 (493)
                      |.++|.|+ ||.|++++..|.+.|. .|+++.|+  .++.+++.+.+..
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~   49 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKA   49 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccc
Confidence            57899986 8899999999999987 99999999  8888888777763

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.34  E-value=0.062  Score=57.98  Aligned_cols=43  Identities=37%  Similarity=0.427  Sum_probs=39.2

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      ..+.||+++|+|.|.+|++++..|...|++|+++++++.++..
T Consensus       250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~  292 (476)
T PTZ00075        250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQ  292 (476)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHH
Confidence            5688999999999999999999999999999999999877643

>PRK07814 short chain dehydrogenase; Provisional

Probab=95.31  E-value=0.044  Score=53.99  Aligned_cols=48  Identities=33%  Similarity=0.386  Sum_probs=41.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++++++||.|+ ||.|++++..|.+.|++|+++.|+.++.+++.+.+.
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~   55 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIR   55 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            467899999998 569999999999999999999999988888877654

>PRK08589 short chain dehydrogenase; Validated

Probab=95.31  E-value=0.043  Score=54.51  Aligned_cols=46  Identities=26%  Similarity=0.325  Sum_probs=40.6

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++|++||.|+ ||.|++++..|++.|++|++++|+ ++.+++++.+.
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~   50 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIK   50 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHH
Confidence            56899999998 889999999999999999999999 77777777664

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.30  E-value=0.08  Score=54.03  Aligned_cols=46  Identities=26%  Similarity=0.312  Sum_probs=40.8

Q ss_pred             EEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhh
Q 011136          384 FVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLL  429 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~  429 (493)
                      +.|||+|++|.++++.|+..|.  +|++++++.++++.++.++.....
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~   48 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASA   48 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcc
Confidence            4689999999999999999994  899999999999999988876653

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=95.30  E-value=0.052  Score=55.45  Aligned_cols=46  Identities=20%  Similarity=0.310  Sum_probs=40.7

Q ss_pred             CCEEEEEecchHHHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~-g~-~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++.|+|+|.-|+.-+.++... .. +|.|+||+.++++++++.+..
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~  164 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSK  164 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHH
Confidence            57899999999999988888764 46 999999999999999988774

>PRK06823 ornithine cyclodeaminase; Validated

Probab=95.30  E-value=0.053  Score=55.76  Aligned_cols=46  Identities=9%  Similarity=0.024  Sum_probs=40.0

Q ss_pred             CCEEEEEecchHHHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~-g~-~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++.|+|+|..|+.-+.++... .. +|+|+||+.++++++++.+..
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~  175 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA  175 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh
Confidence            57899999999999999888764 35 999999999999999987653

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.29  E-value=0.06  Score=52.20  Aligned_cols=87  Identities=16%  Similarity=0.106  Sum_probs=58.0

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY-GESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~-~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      .+++||+|||+|+|.+|.-=+..|.+.|++|+|++-+. +.-..+++.....|..          ...+..+-.+..+++
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~----------~~~~~~~~~~~~lvi   77 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIE----------REFDAEDLDDAFLVI   77 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhh----------cccChhhhcCceEEE
Confidence            67889999999999999999999999999999999887 5555555554433322          111111112244444


Q ss_pred             eccccCCchhhHhhhhhHHHHhhccc
Q 011136          456 NIIHLGNHLEWVTAAFNLFFYLTCNS  481 (493)
Q Consensus       456 n~tplG~~~~~~~~~~~~~~~~~~~~  481 (493)
                      =||+        -...|..++..|+.
T Consensus        78 aAt~--------d~~ln~~i~~~a~~   95 (210)
T COG1648          78 AATD--------DEELNERIAKAARE   95 (210)
T ss_pred             EeCC--------CHHHHHHHHHHHHH
Confidence            3332        12457778888776

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.27  E-value=0.047  Score=52.78  Aligned_cols=47  Identities=23%  Similarity=0.314  Sum_probs=41.0

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++++++|.|+ ||.|++++..|.+.|++|+++.|+.++.+.+.+.+.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~   50 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECG   50 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            45789999998 999999999999999999999999988777766553

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.26  E-value=0.14  Score=51.77  Aligned_cols=121  Identities=20%  Similarity=0.258  Sum_probs=79.6

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec-----
Q 011136          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----  342 (493)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~-----  342 (493)
                      ...++++|++.....++-    +++.+.++.+ .+++..|.-|-+|....    +|+    -+.+.+++--.--+     
T Consensus        55 ~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~----i~~----~~i~~~I~p~KDVDGl~~~  126 (284)
T PRK14177         55 VKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQ----IDE----RAAFDRIALEKDVDGVTTL  126 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCH----HHHHhccCcccccccCChh
Confidence            567899999988766643    3677777777 45889999999997532    221    11222222221110     


Q ss_pred             cCCeE-EEE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeC
Q 011136          343 SDGKL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (493)
Q Consensus       343 ~~g~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R  412 (493)
                      +-|++ .|.    -.--.|++.-|+..           +.+++||+|+|+|-+. .|+-++.-|.+.|+.|+++..
T Consensus       127 n~g~l~~g~~~~~PcTp~avi~ll~~y-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs  191 (284)
T PRK14177        127 SFGKLSMGVETYLPCTPYGMVLLLKEY-----------GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHS  191 (284)
T ss_pred             hHHHHHcCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence            01222 111    11256777777653           2678999999999988 999999999999999999874

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.25  E-value=0.27  Score=49.75  Aligned_cols=137  Identities=16%  Similarity=0.234  Sum_probs=86.1

Q ss_pred             Eeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHH
Q 011136          257 GIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAK  330 (493)
Q Consensus       257 ~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~  330 (493)
                      -++| +|-+++.--.. -..++++|++.....++.    +++.+.++.+ .+++..|.-|-+|....+    ++    -+
T Consensus        37 I~vg~d~as~~Yv~~k-~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i----~~----~~  107 (282)
T PRK14180         37 IIVGNDPASKTYVASK-EKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHI----NK----NN  107 (282)
T ss_pred             EEeCCCHHHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCC----CH----HH
Confidence            3445 44444433223 456889999987766654    3677777777 567899999999975322    21    12


Q ss_pred             HhcceeeEEEec-----cCCeE-EEE-----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHH
Q 011136          331 SIGAVNCIIRRQ-----SDGKL-FGY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAY  398 (493)
Q Consensus       331 ~igAvNti~~~~-----~~g~l-~G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~  398 (493)
                      .+.+++...--+     .-|++ .|.     -.-..|++.-|+..           +.+++||+++|+|.+. .|+-++.
T Consensus       108 i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y-----------~i~l~Gk~vvViGrS~~VGkPla~  176 (282)
T PRK14180        108 VIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREY-----------GIKTEGAYAVVVGASNVVGKPVSQ  176 (282)
T ss_pred             HHhhcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHH
Confidence            222333222110     01222 221     11256777776653           2678999999999988 9999999


Q ss_pred             HHHhCCCeEEEEeCC
Q 011136          399 GAKAKGARVVIANRT  413 (493)
Q Consensus       399 ~L~~~g~~i~v~~R~  413 (493)
                      -|.+.|+.|+++.+.
T Consensus       177 lL~~~~ATVt~chs~  191 (282)
T PRK14180        177 LLLNAKATVTTCHRF  191 (282)
T ss_pred             HHHHCCCEEEEEcCC
Confidence            999999999998753

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.23  E-value=0.048  Score=53.17  Aligned_cols=48  Identities=33%  Similarity=0.374  Sum_probs=42.5

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      +++|++||.|+ |+.|++++..|++.|++|.++.|+.++.+++.+.+..
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~   53 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK   53 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh
Confidence            56889999998 8899999999999999999999999888888776643

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.23  E-value=0.027  Score=57.89  Aligned_cols=93  Identities=10%  Similarity=-0.035  Sum_probs=61.6

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|+|.|.+|+.++..|...|++|+.++|+.++........              -..++++-+ ++.++++.
T Consensus       132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~--------------~~~~l~e~l-~~aDvvv~  196 (312)
T PRK15469        132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFA--------------GREELSAFL-SQTRVLIN  196 (312)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeec--------------ccccHHHHH-hcCCEEEE
Confidence            356789999999999999999999999999999999765432111100              012333333 55678888


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      ..|+.-.-..+..  -..|..+-++.++++
T Consensus       197 ~lPlt~~T~~li~--~~~l~~mk~ga~lIN  224 (312)
T PRK15469        197 LLPNTPETVGIIN--QQLLEQLPDGAYLLN  224 (312)
T ss_pred             CCCCCHHHHHHhH--HHHHhcCCCCcEEEE
Confidence            8887766555542  234555445666655

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.23  E-value=0.045  Score=53.55  Aligned_cols=46  Identities=37%  Similarity=0.418  Sum_probs=41.0

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +.+|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~   50 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI   50 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh
Confidence            45789999997 88999999999999999999999999888887654

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.22  E-value=0.28  Score=46.62  Aligned_cols=121  Identities=21%  Similarity=0.175  Sum_probs=68.5

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (493)
Q Consensus        26 Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (493)
                      ++.-+...+.++....++.+.+.|+.++|+|..-..   ..+.++.+++..  |.+ ..    .+|.. ... ++   ++
T Consensus        14 ~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~---~~e~~~~~~~~~--~~~-~~----g~gtv-l~~-d~---~~   78 (187)
T PRK07455         14 AIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQ---PAELISQLREKL--PEC-II----GTGTI-LTL-ED---LE   78 (187)
T ss_pred             EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCC---HHHHHHHHHHhC--CCc-EE----eEEEE-EcH-HH---HH
Confidence            334589999999999999999999999999986432   233444444322  321 01    11221 121 33   44


Q ss_pred             HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec
Q 011136          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA  176 (493)
Q Consensus       106 ~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a  176 (493)
                      .+++.|+++|=+=- .+++..+ .... ++.-.+++ .|    ||+      .+.++.+.|||++|+ +++
T Consensus        79 ~A~~~gAdgv~~p~-~~~~~~~-~~~~-~~~~~i~G-~~----t~~------e~~~A~~~Gadyv~~-Fpt  134 (187)
T PRK07455         79 EAIAAGAQFCFTPH-VDPELIE-AAVA-QDIPIIPG-AL----TPT------EIVTAWQAGASCVKV-FPV  134 (187)
T ss_pred             HHHHcCCCEEECCC-CCHHHHH-HHHH-cCCCEEcC-cC----CHH------HHHHHHHCCCCEEEE-CcC
Confidence            67788999982211 1122221 1111 23334566 55    332      345566799999999 443

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=95.21  E-value=0.37  Score=45.71  Aligned_cols=118  Identities=22%  Similarity=0.248  Sum_probs=68.5

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (493)
Q Consensus        26 Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (493)
                      ++.-+...+.++...-++.+.+.|++++|+|..--   +..+.++.+++..+- +.+..      |..  ...+   -++
T Consensus         6 ~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~---~~~~~i~~l~~~~~~-~~iGa------g~v--~~~~---~~~   70 (190)
T cd00452           6 LVAVLRGDDAEDALALAEALIEGGIRAIEITLRTP---GALEAIRALRKEFPE-ALIGA------GTV--LTPE---QAD   70 (190)
T ss_pred             EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHHCCC-CEEEE------EeC--CCHH---HHH
Confidence            33458899999999999999999999999997632   223456666554431 22211      211  1112   234


Q ss_pred             HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       106 ~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      .++..|+++|=.- ..+.+..+   ..+..+.++|.-..    |  .    +...++.+.|||++|+
T Consensus        71 ~a~~~Ga~~i~~p-~~~~~~~~---~~~~~~~~~i~gv~----t--~----~e~~~A~~~Gad~i~~  123 (190)
T cd00452          71 AAIAAGAQFIVSP-GLDPEVVK---AANRAGIPLLPGVA----T--P----TEIMQALELGADIVKL  123 (190)
T ss_pred             HHHHcCCCEEEcC-CCCHHHHH---HHHHcCCcEECCcC----C--H----HHHHHHHHCCCCEEEE
Confidence            6677889988321 11222222   22234566666432    2  2    2345556799999998

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.20  E-value=0.043  Score=55.50  Aligned_cols=48  Identities=33%  Similarity=0.403  Sum_probs=41.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++++|+++|.|+ ||.|++++..|++.|++|+++.|+.+++++..+.+.
T Consensus        13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~   61 (306)
T PRK06197         13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARIT   61 (306)
T ss_pred             cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            467899999997 889999999999999999999999988877665543

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.19  E-value=0.22  Score=50.73  Aligned_cols=141  Identities=20%  Similarity=0.257  Sum_probs=86.5

Q ss_pred             EEeecC-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136          256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (493)
Q Consensus       256 ~~viG~-pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  329 (493)
                      .-++|+ |-+++.- ..-...++++|++.....++.    +++.+.++.+ .+++..|+-|-.|...    ++|+   . 
T Consensus        36 ii~vg~d~as~~Yv-~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~----~id~---~-  106 (295)
T PRK14174         36 VIIVGEDPASQVYV-RNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPK----QIDE---F-  106 (295)
T ss_pred             EEEeCCChHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-
Confidence            445663 3333333 233567899999988777764    3677777777 5678999999999752    2222   1 


Q ss_pred             HHhcceeeEEEec-----cCCeEE-EE--e----ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHH
Q 011136          330 KSIGAVNCIIRRQ-----SDGKLF-GY--N----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKAL  396 (493)
Q Consensus       330 ~~igAvNti~~~~-----~~g~l~-G~--N----TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~  396 (493)
                      +.+.+++.-.--+     .-|+++ |+  +    .-..|++.-|+..           +.+++||+|+|+|.+. .|+-+
T Consensus       107 ~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y-----------~i~l~Gk~vvViGrS~iVG~Pl  175 (295)
T PRK14174        107 AVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRY-----------NIETKGKHCVVVGRSNIVGKPM  175 (295)
T ss_pred             HHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHH
Confidence            1122222221110     012222 21  1    2245666666542           2678999999999988 89999


Q ss_pred             HHHHHh----CCCeEEEEeCChHH
Q 011136          397 AYGAKA----KGARVVIANRTYGE  416 (493)
Q Consensus       397 ~~~L~~----~g~~i~v~~R~~~~  416 (493)
                      +.-|.+    .|+.|++...+...
T Consensus       176 a~lL~~~~~~~~atVt~~hs~t~~  199 (295)
T PRK14174        176 ANLMLQKLKESNCTVTICHSATKD  199 (295)
T ss_pred             HHHHHhccccCCCEEEEEeCCchh
Confidence            988877    57788888765433

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.19  E-value=0.025  Score=54.37  Aligned_cols=36  Identities=19%  Similarity=0.404  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~  413 (493)
                      .++.++|+|+|+||+|..++..|+..|+ +|++++++
T Consensus        18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3567899999999999999999999999 89999887

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.18  E-value=0.039  Score=55.03  Aligned_cols=41  Identities=17%  Similarity=0.214  Sum_probs=35.4

Q ss_pred             cCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          379 LAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       379 l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      +++|.+||.|++   |.|++++.+|++.|++|+++.|+.+..+.
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~   48 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKR   48 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHH
Confidence            568999999997   89999999999999999999998644433

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.16  E-value=0.064  Score=54.78  Aligned_cols=41  Identities=22%  Similarity=0.175  Sum_probs=36.4

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++|.|||+|-+|.+++..|++.|++|++++|+.++.+...+
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~   43 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPA   43 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHH
Confidence            46999999999999999999999999999999887776543

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.16  E-value=0.05  Score=58.19  Aligned_cols=46  Identities=20%  Similarity=0.120  Sum_probs=37.3

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++|+++|+|.|++|++++..|++.|++|++.+++........+.+
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l   48 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQEL   48 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHH
Confidence            4588999999999999999999999999999998764443333333

>PRK07831 short chain dehydrogenase; Provisional

Probab=95.15  E-value=0.048  Score=53.54  Aligned_cols=48  Identities=38%  Similarity=0.406  Sum_probs=40.8

Q ss_pred             ccCCCEEEEEec-c-hHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-G-GAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-G-Gaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ | |.|++++..|++.|++|++.+|+.++.++..+.+.
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~   63 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELA   63 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence            356899999997 6 89999999999999999999999888777665543

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.14  E-value=0.052  Score=53.48  Aligned_cols=49  Identities=27%  Similarity=0.246  Sum_probs=42.6

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .++++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus         6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~   55 (265)
T PRK07097          6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYR   55 (265)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence            3567899999998 679999999999999999999999988888776654

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.14  E-value=0.4  Score=48.41  Aligned_cols=137  Identities=21%  Similarity=0.232  Sum_probs=85.3

Q ss_pred             EeecC-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHH
Q 011136          257 GIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAK  330 (493)
Q Consensus       257 ~viG~-pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~  330 (493)
                      -++|+ |-+++.-- .-...++++|++.....++-    +++.+.++.+ .+++..|.-|-+|....    +|+    -+
T Consensus        38 i~vg~d~as~~Yv~-~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~----~~~----~~  108 (278)
T PRK14172         38 ILVGNDGGSIYYMN-NQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKH----LDE----KK  108 (278)
T ss_pred             EEeCCCHHHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCH----HH
Confidence            35663 33333222 22467899999988777663    3577777777 46789999999997532    221    12


Q ss_pred             HhcceeeEEEec-----cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHH
Q 011136          331 SIGAVNCIIRRQ-----SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYG  399 (493)
Q Consensus       331 ~igAvNti~~~~-----~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~  399 (493)
                      .+.+++.-.--+     +-|+++ |.    -.--.|++.-|+..           +.+++||+|+|+|-+. .|+-++.-
T Consensus       109 i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~av~~lL~~~-----------~i~l~Gk~vvViGrS~~VGkPla~l  177 (278)
T PRK14172        109 ITNKIDANKDIDCLTFISVGKFYKGEKCFLPCTPNSVITLIKSL-----------NIDIEGKEVVVIGRSNIVGKPVAQL  177 (278)
T ss_pred             HHhccCcccccCccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHH
Confidence            223333322110     012211 11    11246666666652           2678999999999988 99999999


Q ss_pred             HHhCCCeEEEEeCC
Q 011136          400 AKAKGARVVIANRT  413 (493)
Q Consensus       400 L~~~g~~i~v~~R~  413 (493)
                      |.+.|+.|+++.+.
T Consensus       178 L~~~~AtVt~chs~  191 (278)
T PRK14172        178 LLNENATVTICHSK  191 (278)
T ss_pred             HHHCCCEEEEeCCC
Confidence            99999999999743

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.13  E-value=0.057  Score=52.45  Aligned_cols=50  Identities=24%  Similarity=0.333  Sum_probs=42.9

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ..+++|+++|.|+ |+.|.+++..|++.|++|++++|+.++.+++.+++..
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~   58 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEA   58 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHh
Confidence            3467899999987 6799999999999999999999999888887776543

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.12  E-value=0.056  Score=52.62  Aligned_cols=48  Identities=29%  Similarity=0.452  Sum_probs=42.4

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~   53 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIV   53 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            467899999997 779999999999999999999999988888877664

>PRK07326 short chain dehydrogenase; Provisional

Probab=95.10  E-value=0.054  Score=52.09  Aligned_cols=46  Identities=28%  Similarity=0.336  Sum_probs=40.3

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++++|.|+ |+.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~   51 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELN   51 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHh
Confidence            4689999997 779999999999999999999999988888776654

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.08  E-value=0.022  Score=66.91  Aligned_cols=85  Identities=13%  Similarity=0.096  Sum_probs=60.8

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCC-Ce-------------EEEEeCChHHHHHHHHHhhhhhhcccccceEEE-E---e
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKG-AR-------------VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIV-I---R  441 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g-~~-------------i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v-~---~  441 (493)
                      +.|+|+|||||.+|+.++..|++.. ++             |+|++++.++++++++.+....       .+.+ .   +
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~-------~v~lDv~D~e  640 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAE-------AVQLDVSDSE  640 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCc-------eEEeecCCHH
Confidence            4679999999999999999998764 24             9999999999999998763210       1111 1   1


Q ss_pred             ecccccCCceEEEEeccccCCchhhHhhhhh
Q 011136          442 ILLFTWHLKFFIAANIIHLGNHLEWVTAAFN  472 (493)
Q Consensus       442 ~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~  472 (493)
                      ++.... .+.+++++++|-..|.+...+...
T Consensus       641 ~L~~~v-~~~DaVIsalP~~~H~~VAkaAie  670 (1042)
T PLN02819        641 SLLKYV-SQVDVVISLLPASCHAVVAKACIE  670 (1042)
T ss_pred             HHHHhh-cCCCEEEECCCchhhHHHHHHHHH
Confidence            222212 347899999999888777665443

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.07  E-value=0.18  Score=51.05  Aligned_cols=139  Identities=19%  Similarity=0.312  Sum_probs=84.7

Q ss_pred             Eeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHH--hhhhhhhcHH
Q 011136          257 GIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTV  328 (493)
Q Consensus       257 ~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~  328 (493)
                      -++| +|-+.+.- ..-...++++|++.....++-    +++.+.++.+ .++...|+-|-+|....+  ...++.+++ 
T Consensus        37 I~vg~d~as~~Yv-~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p-  114 (285)
T PRK14191         37 ILVGKDPASQTYV-NMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDP-  114 (285)
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCc-
Confidence            3456 34333333 233557889999987666653    3677777777 467899999999975211  111222221 


Q ss_pred             HHHhcceeeEEEeccCCeEE-EEe----ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecc-hHHHHHHHHHHh
Q 011136          329 AKSIGAVNCIIRRQSDGKLF-GYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKA  402 (493)
Q Consensus       329 A~~igAvNti~~~~~~g~l~-G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaG-Gaara~~~~L~~  402 (493)
                      .+.+-..+..    +-|+++ |.+    .-..|++.-|+..           +.+++||+|+|+|.| -.|+-++.-|.+
T Consensus       115 ~KDVDGl~~~----n~g~l~~g~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvVvGrs~~VG~Pla~lL~~  179 (285)
T PRK14191        115 NKDVDGFHPL----NIGKLCSQLDGFVPATPMGVMRLLKHY-----------HIEIKGKDVVIIGASNIVGKPLAMLMLN  179 (285)
T ss_pred             cccccccChh----hHHHHhcCCCCCCCCcHHHHHHHHHHh-----------CCCCCCCEEEEECCCchhHHHHHHHHHH
Confidence            1111111111    012221 111    2256666666642           267899999999999 699999999999


Q ss_pred             CCCeEEEEeC
Q 011136          403 KGARVVIANR  412 (493)
Q Consensus       403 ~g~~i~v~~R  412 (493)
                      .|+.|+++..
T Consensus       180 ~gAtVtv~hs  189 (285)
T PRK14191        180 AGASVSVCHI  189 (285)
T ss_pred             CCCEEEEEeC
Confidence            9999988764

>PRK07589 ornithine cyclodeaminase; Validated

Probab=95.06  E-value=0.057  Score=56.27  Aligned_cols=46  Identities=17%  Similarity=0.235  Sum_probs=40.0

Q ss_pred             CCEEEEEecchHHHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~-g~-~i~v~~R~~~~a~~la~~~~~  426 (493)
                      -+++.|||+|.-|+.-+.++... .. +|+|+||+.++++++++.+..
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~  176 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG  176 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh
Confidence            46899999999999988877654 45 999999999999999998764

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.05  E-value=0.054  Score=54.85  Aligned_cols=43  Identities=21%  Similarity=0.191  Sum_probs=38.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      ++|.|||+|-||+.++..++..|++|++++++++..+...+.+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i   48 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRI   48 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence            4799999999999999999999999999999999887754443

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.04  E-value=0.097  Score=52.71  Aligned_cols=40  Identities=18%  Similarity=0.251  Sum_probs=36.1

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++.|+|+|.+|..++..|++.|++|+++.|+.++.+.+.+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~   41 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE   41 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH
Confidence            5899999999999999999999999999998888777654

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.03  E-value=0.13  Score=52.76  Aligned_cols=84  Identities=14%  Similarity=-0.023  Sum_probs=57.2

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      .+|.|||+|.+|.++++.|...|.  +|++++++.++++..+.++.....- .....++.-.+.++ . .+.+|++-+..
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~-~~~~~v~~~~dy~~-~-~~adivvitaG   80 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAF-LKNPKIEADKDYSV-T-ANSKVVIVTAG   80 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhcc-CCCCEEEECCCHHH-h-CCCCEEEECCC
Confidence            489999999999999999998885  8999999999998888887765511 11124443233322 2 55666665333


Q ss_pred             c----CCchhhHh
Q 011136          460 L----GNHLEWVT  468 (493)
Q Consensus       460 l----G~~~~~~~  468 (493)
                      .    ||+...+.
T Consensus        81 ~~~k~g~~R~dll   93 (312)
T cd05293          81 ARQNEGESRLDLV   93 (312)
T ss_pred             CCCCCCCCHHHHH
Confidence            2    56654443

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07109 short chain dehydrogenase; Provisional

Probab=95.02  E-value=0.059  Score=55.62  Aligned_cols=48  Identities=25%  Similarity=0.373  Sum_probs=42.6

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++++++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~   53 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIR   53 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            456889999998 889999999999999999999999998888877664

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.02  E-value=0.056  Score=51.69  Aligned_cols=46  Identities=35%  Similarity=0.452  Sum_probs=39.3

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++|++||.|+ |+.|++++..|.+.|++|++++|+.++..+..+.+
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~   51 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGV   51 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHH
Confidence            56899999998 77999999999999999999999988766655443

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.01  E-value=0.062  Score=53.11  Aligned_cols=48  Identities=27%  Similarity=0.371  Sum_probs=41.4

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|+..|++|++++|+.++.+++.+.+.
T Consensus         6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   54 (264)
T PRK07576          6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQ   54 (264)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            356899999998 789999999999999999999999888777765554

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.01  E-value=0.27  Score=49.83  Aligned_cols=139  Identities=19%  Similarity=0.283  Sum_probs=86.4

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  329 (493)
                      .-++| +|-+++.--.. ..+++++|++.....++.    +++.+.++.+ .++...|.-|-+|.-..    +|+    -
T Consensus        36 ii~vg~d~as~~Yv~~k-~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~----id~----~  106 (286)
T PRK14184         36 VILVGEDPASQVYVRNK-ERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKG----LDS----Q  106 (286)
T ss_pred             EEEeCCChhHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCC----CCH----H
Confidence            34556 44444433333 456889999987766653    4677777777 56789999999996432    222    1


Q ss_pred             HHhcceeeEEEec-----cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHH
Q 011136          330 KSIGAVNCIIRRQ-----SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAY  398 (493)
Q Consensus       330 ~~igAvNti~~~~-----~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~  398 (493)
                      +.+.+++.-.--+     +-|+++ |.    -.--.|++.-|+..           +.+++||+++|+|-+. .|+-++.
T Consensus       107 ~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~~-----------~i~l~Gk~vvViGrS~iVG~Pla~  175 (286)
T PRK14184        107 RCLELIDPAKDVDGFHPENMGRLALGLPGFRPCTPAGVMTLLERY-----------GLSPAGKKAVVVGRSNIVGKPLAL  175 (286)
T ss_pred             HHHhccCcccCcccCCHhhHHHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHH
Confidence            2233333322110     002221 11    11246777776653           2678999999999988 9999999


Q ss_pred             HHHh----CCCeEEEEeCCh
Q 011136          399 GAKA----KGARVVIANRTY  414 (493)
Q Consensus       399 ~L~~----~g~~i~v~~R~~  414 (493)
                      -|.+    .++.|+++..+.
T Consensus       176 lL~~~~~~~~AtVt~~hs~t  195 (286)
T PRK14184        176 MLGAPGKFANATVTVCHSRT  195 (286)
T ss_pred             HHhCCcccCCCEEEEEeCCc
Confidence            9988    778888887543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.01  E-value=0.063  Score=51.65  Aligned_cols=47  Identities=36%  Similarity=0.489  Sum_probs=40.5

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++++++|.|+ |+.|.+++..|.+.|++|+++.|+.++.+.+.+.+.
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   50 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLS   50 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            45789999998 669999999999999999999999988877765543

>PRK12939 short chain dehydrogenase; Provisional

Probab=95.01  E-value=0.062  Score=51.91  Aligned_cols=47  Identities=32%  Similarity=0.385  Sum_probs=41.5

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++++++|.|+ ||.|++++..|.+.|++|++++|+.++.+.+.+.+.
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~   52 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALE   52 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence            56899999997 889999999999999999999999998888777654

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=95.01  E-value=0.1  Score=54.08  Aligned_cols=41  Identities=20%  Similarity=0.198  Sum_probs=36.9

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+.+..
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~  182 (330)
T PRK12480        142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKD  182 (330)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHh
Confidence            45789999999999999999999999999999999987653

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.01  E-value=0.056  Score=52.75  Aligned_cols=45  Identities=31%  Similarity=0.379  Sum_probs=39.5

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++++.+.
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~   46 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIE   46 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            478999988 669999999999999999999999988888876654

>PRK06194 hypothetical protein; Provisional

Probab=95.00  E-value=0.06  Score=53.54  Aligned_cols=47  Identities=30%  Similarity=0.347  Sum_probs=40.8

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++++++||.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   51 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELR   51 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHH
Confidence            45789999997 789999999999999999999999888877776654

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.00  E-value=0.054  Score=54.78  Aligned_cols=41  Identities=27%  Similarity=0.254  Sum_probs=37.4

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++|.|||+|-+|.+++..|+..|.+|++++|+.++.+.+.+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~   45 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLA   45 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            67999999999999999999999999999999988877554

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=94.99  E-value=0.83  Score=43.49  Aligned_cols=108  Identities=26%  Similarity=0.324  Sum_probs=62.7

Q ss_pred             HHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHH---HhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 011136           36 DKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTL---IKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA  112 (493)
Q Consensus        36 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l---~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~  112 (493)
                      ++....++.+.+.|+|+|++|.-.+...+..+.++.+   .+..+.|++.+                  +.++.+.+.|+
T Consensus        21 ~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~~a~~~ga   82 (212)
T PRK00043         21 RDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVN------------------DRVDLALAVGA   82 (212)
T ss_pred             ccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe------------------ChHHHHHHcCC
Confidence            4466677777788999999997543311111222222   23346777753                  12456777899


Q ss_pred             cEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 011136          113 DYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (493)
Q Consensus       113 dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia  173 (493)
                      ++|-+......  ...+...+..+.++-+|.|    |  .++    ..++...|+|++++-
T Consensus        83 d~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~----t--~~e----~~~a~~~gaD~v~~~  131 (212)
T PRK00043         83 DGVHLGQDDLP--VADARALLGPDAIIGLSTH----T--LEE----AAAALAAGADYVGVG  131 (212)
T ss_pred             CEEecCcccCC--HHHHHHHcCCCCEEEEeCC----C--HHH----HHHHhHcCCCEEEEC
Confidence            99877543221  1222222345667788877    2  223    344557899999973

>PRK07454 short chain dehydrogenase; Provisional

Probab=94.99  E-value=0.061  Score=51.96  Aligned_cols=46  Identities=20%  Similarity=0.218  Sum_probs=40.3

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++|+++|.|+ ||.|++++..|.+.|.+|++++|+.++.+.+.+.+.
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   51 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELR   51 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            3678999997 889999999999999999999999988888776654

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.99  E-value=0.14  Score=50.91  Aligned_cols=44  Identities=18%  Similarity=0.284  Sum_probs=38.6

Q ss_pred             CEEEEEecchHHHHHHHHHHhCC---CeEEEEeCChHHHHHHHHHhh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKG---ARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g---~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .++.|||+|.+|.+++..|.+.|   .+|++++|+.++++.+.+.++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g   49 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYG   49 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcC
Confidence            36899999999999999999988   589999999999888877553

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.98  E-value=0.34  Score=49.09  Aligned_cols=124  Identities=15%  Similarity=0.281  Sum_probs=78.5

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHh--hhhhhhcHHHHHhcceeeEEEeccCC
Q 011136          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTVAKSIGAVNCIIRRQSDG  345 (493)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igAvNti~~~~~~g  345 (493)
                      ...++++|++.....++-    +++.+.++.+ .+++..|.-|-+|....+-  ..++.+++ .+.+-..+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p-~KDVDGl~~~n----~g  128 (284)
T PRK14190         54 KKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISP-EKDVDGFHPIN----VG  128 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCc-cccccccCHhh----HH
Confidence            567889999987766654    3677777777 5678999999999753211  11222221 11111111110    01


Q ss_pred             eEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeC
Q 011136          346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (493)
Q Consensus       346 ~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R  412 (493)
                      +++ |.    -.--.|++.-|+..           +.+++||+|+|+|.+. .|+-++.-|...|+.|+++..
T Consensus       129 ~l~~~~~~~~PcTp~av~~lL~~~-----------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs  190 (284)
T PRK14190        129 RMMLGQDTFLPCTPHGILELLKEY-----------NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHS  190 (284)
T ss_pred             HHhcCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeC
Confidence            111 11    11245666666542           2678999999999988 999999999999999998864

>PRK06138 short chain dehydrogenase; Provisional

Probab=94.96  E-value=0.059  Score=52.24  Aligned_cols=47  Identities=36%  Similarity=0.492  Sum_probs=40.7

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++|+++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++.+.+.
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~   50 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA   50 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh
Confidence            46889999998 789999999999999999999999888877766553

>PLN03139 formate dehydrogenase; Provisional

Probab=94.95  E-value=0.058  Score=57.02  Aligned_cols=96  Identities=14%  Similarity=0.008  Sum_probs=64.3

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.||++.|||.|.+|+.++..|...|++|..++|+....+. .+..+..           ...++++-+ ++.++++.
T Consensus       195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~-~~~~g~~-----------~~~~l~ell-~~sDvV~l  261 (386)
T PLN03139        195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPEL-EKETGAK-----------FEEDLDAML-PKCDVVVI  261 (386)
T ss_pred             cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhh-HhhcCce-----------ecCCHHHHH-hhCCEEEE
Confidence            4688999999999999999999999999999999998543322 2222111           112344333 55678888


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ..|+.-.-..+..  -..|..+-++.++++-
T Consensus       262 ~lPlt~~T~~li~--~~~l~~mk~ga~lIN~  290 (386)
T PLN03139        262 NTPLTEKTRGMFN--KERIAKMKKGVLIVNN  290 (386)
T ss_pred             eCCCCHHHHHHhC--HHHHhhCCCCeEEEEC
Confidence            8886665555542  2455565667777664

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=94.95  E-value=0.055  Score=54.93  Aligned_cols=84  Identities=27%  Similarity=0.216  Sum_probs=59.0

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEE-----------eeccccc-
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVI-----------RILLFTW-  447 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~-----------~~l~~~~-  447 (493)
                      |+-++|-|| .|.||+-+..|++.|.+|++++||++|.+++++++....--     .|+++           +.+.+.. 
T Consensus        49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~v-----ev~~i~~Dft~~~~~ye~i~~~l~  123 (312)
T KOG1014|consen   49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKV-----EVRIIAIDFTKGDEVYEKLLEKLA  123 (312)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCc-----EEEEEEEecCCCchhHHHHHHHhc
Confidence            467889998 67999999999999999999999999999999987755520     11111           1111000 


Q ss_pred             CCceEEEEeccccCC-chhhHhh
Q 011136          448 HLKFFIAANIIHLGN-HLEWVTA  469 (493)
Q Consensus       448 ~~~~~i~~n~tplG~-~~~~~~~  469 (493)
                      --+.-|++|.....- +|+.+..
T Consensus       124 ~~~VgILVNNvG~~~~~P~~f~~  146 (312)
T KOG1014|consen  124 GLDVGILVNNVGMSYDYPESFLK  146 (312)
T ss_pred             CCceEEEEecccccCCCcHHHHh
Confidence            124578999887776 4666543

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=94.94  E-value=0.06  Score=52.73  Aligned_cols=47  Identities=28%  Similarity=0.415  Sum_probs=39.3

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|+++.|+ ++.+++.+.+.
T Consensus        12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~   59 (258)
T PRK06935         12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIE   59 (258)
T ss_pred             cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHH
Confidence            467899999998 679999999999999999999998 56666655543

>PRK05876 short chain dehydrogenase; Provisional

Probab=94.94  E-value=0.062  Score=53.64  Aligned_cols=47  Identities=23%  Similarity=0.304  Sum_probs=41.4

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++|.++|.|+ ||.|++++..|++.|++|+++.|+.++.+++.+.+.
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~   51 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLR   51 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            56899999986 789999999999999999999999988888776664

>PRK06500 short chain dehydrogenase; Provisional

Probab=94.93  E-value=0.061  Score=52.02  Aligned_cols=46  Identities=30%  Similarity=0.325  Sum_probs=40.1

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++|+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++.+.+
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   50 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL   50 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh
Confidence            45789999998 88999999999999999999999988877776654

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=94.93  E-value=0.062  Score=54.78  Aligned_cols=46  Identities=22%  Similarity=0.285  Sum_probs=41.3

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+|+++|.|+ ||.|++++..|++.|++|++++|+.++++++.+.+.
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~   51 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELG   51 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh
Confidence            4789999987 889999999999999999999999999988877663

>cd00945 Aldolase_Class_I Class I aldolases

Probab=94.91  E-value=2.6  Score=39.16  Aligned_cols=152  Identities=16%  Similarity=0.147  Sum_probs=91.0

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC---CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh
Q 011136           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES---PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL  110 (493)
Q Consensus        34 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~---~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~  110 (493)
                      +.+.+...++.+.+.|+|.+++--         +.++.+++..   +.|+++.+-...  +.  ...++-.+..+.+.+.
T Consensus        11 d~~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~--~~--~~~~~~~~~a~~a~~~   77 (201)
T cd00945          11 TLEDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPT--GL--TTTEVKVAEVEEAIDL   77 (201)
T ss_pred             CHHHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCC--CC--CcHHHHHHHHHHHHHc
Confidence            777888888888888999999865         2344444332   588887765321  11  2246677888999999


Q ss_pred             CCcEEEEEcccc-------c---chhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC---
Q 011136          111 GADYIDVELQVA-------R---EFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL---  177 (493)
Q Consensus       111 ~~dyIDIEl~~~-------~---~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~---  177 (493)
                      |+|.+.+-....       +   +.++++...-+.+..+++ |+....+.+.+++.+..+.+...|+|.+|......   
T Consensus        78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~i-y~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~  156 (201)
T cd00945          78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKV-ILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGG  156 (201)
T ss_pred             CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEE-EEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC
Confidence            999999864431       1   223334332113455555 33322233455677776667789999999876422   


Q ss_pred             -CHhHHHHHHHHhccCCCCEEEEe
Q 011136          178 -DITDVARVFQITVHSQVPIIGLV  200 (493)
Q Consensus       178 -s~~D~~~l~~~~~~~~~PlIa~~  200 (493)
                       +.++...+.+..+ .+.|+++.+
T Consensus       157 ~~~~~~~~i~~~~~-~~~~v~~~g  179 (201)
T cd00945         157 ATVEDVKLMKEAVG-GRVGVKAAG  179 (201)
T ss_pred             CCHHHHHHHHHhcc-cCCcEEEEC
Confidence             4555544444322 134665543

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK08643 acetoin reductase; Validated

Probab=94.89  E-value=0.064  Score=52.35  Aligned_cols=45  Identities=27%  Similarity=0.283  Sum_probs=39.7

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|.++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~   47 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS   47 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            578999987 779999999999999999999999988888877654

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.89  E-value=0.16  Score=51.47  Aligned_cols=120  Identities=23%  Similarity=0.339  Sum_probs=77.8

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec-----
Q 011136          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----  342 (493)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~-----  342 (493)
                      ...++++|++.....++-    +++.+.++.+ .++...|.-|-.|.-..+    ++    -+.+.+++.-.--+     
T Consensus        54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i----~~----~~i~~~I~p~KDVDGl~~~  125 (284)
T PRK14179         54 ERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHI----NE----EKILLAIDPKKDVDGFHPM  125 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCC----CH----HHHHhccCccccccccCHh
Confidence            467899999988776663    3577777777 567899999999975322    21    11222222221110     


Q ss_pred             cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEe
Q 011136          343 SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN  411 (493)
Q Consensus       343 ~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~  411 (493)
                      +-|+++ |.    -.-..|++.-|+..           +.+++||+++|||. |-+|+.++..|.+.|+.|+++.
T Consensus       126 N~g~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~  189 (284)
T PRK14179        126 NTGHLWSGRPVMIPCTPAGIMEMFREY-----------NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH  189 (284)
T ss_pred             hHHHHhCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC
Confidence            012221 10    11245666666542           26789999999999 6699999999999999999984

>PLN02253 xanthoxin dehydrogenase

Probab=94.89  E-value=0.065  Score=53.20  Aligned_cols=48  Identities=23%  Similarity=0.310  Sum_probs=41.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~   63 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG   63 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Confidence            466899999987 789999999999999999999999888887776653

>PRK05875 short chain dehydrogenase; Provisional

Probab=94.88  E-value=0.068  Score=52.85  Aligned_cols=48  Identities=27%  Similarity=0.423  Sum_probs=41.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ |+.|++++..|.+.|++|++++|+.++.+.+.+.+.
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~   52 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIE   52 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence            356899999998 889999999999999999999999888877766543

>PRK12829 short chain dehydrogenase; Provisional

Probab=94.88  E-value=0.064  Score=52.38  Aligned_cols=48  Identities=25%  Similarity=0.338  Sum_probs=41.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++++++|.|+ |+.|++++..|.+.|++|+++.|+.+..+++.+...
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~   56 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP   56 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence            367899999998 779999999999999999999999888877766543

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=94.87  E-value=0.052  Score=55.77  Aligned_cols=75  Identities=16%  Similarity=0.026  Sum_probs=46.0

Q ss_pred             CCEEEEEecchHHHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~-~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      .+++.|+|+|.-|+.-+.++.. .+. +|.|++|+.++++++++.+....      ..+.+..+.++.. .+.+|++=+|
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~~v~~~~~~~~av-~~aDii~taT  200 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLG------VPVVAVDSAEEAV-RGADIIVTAT  200 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCC------TCEEEESSHHHHH-TTSSEEEE--
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcccc------ccceeccchhhhc-ccCCEEEEcc
Confidence            4689999999999999888865 567 99999999999999999888721      1333334443333 3445555555


Q ss_pred             ccCC
Q 011136          459 HLGN  462 (493)
Q Consensus       459 plG~  462 (493)
                      |-.-
T Consensus       201 ~s~~  204 (313)
T PF02423_consen  201 PSTT  204 (313)
T ss_dssp             --SS
T ss_pred             CCCC
Confidence            5444

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.87  E-value=0.057  Score=53.02  Aligned_cols=45  Identities=27%  Similarity=0.302  Sum_probs=36.6

Q ss_pred             ccCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          378 ALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       378 ~l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      .+++|.++|.|++   |.|++++..|++.|++|++..|+. +.++..++
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~   51 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQK   51 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHh
Confidence            3678999999985   999999999999999999999984 44443333

>PRK09072 short chain dehydrogenase; Provisional

Probab=94.86  E-value=0.071  Score=52.38  Aligned_cols=46  Identities=33%  Similarity=0.471  Sum_probs=40.3

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++++++|.|+ ||.|++++..|++.|++|++++|+.++.+++...+
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   49 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL   49 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            35789999996 88999999999999999999999998888776654

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=94.86  E-value=0.07  Score=51.64  Aligned_cols=46  Identities=22%  Similarity=0.265  Sum_probs=40.4

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++++||.|+ |+.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~   48 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIR   48 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHH
Confidence            5789999997 779999999999999999999999998888766553

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.86  E-value=0.28  Score=49.63  Aligned_cols=142  Identities=19%  Similarity=0.280  Sum_probs=87.1

Q ss_pred             EEeecC-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHh--hhhhhhcH
Q 011136          256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDT  327 (493)
Q Consensus       256 ~~viG~-pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~  327 (493)
                      .-++|+ |-+++.- ..-...++++|++.....++-    +++...++.+ .++++.|.-|-.|....+-  ..++.+++
T Consensus        35 ii~vg~d~as~~Yv-~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p  113 (282)
T PRK14169         35 VVLVGSDPASEVYV-RNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDP  113 (282)
T ss_pred             EEEeCCChhHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCc
Confidence            445563 3333332 344567899999987776654    3577777777 5678999999999763321  12222222


Q ss_pred             HHHHhcceeeEEEeccCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHH
Q 011136          328 VAKSIGAVNCIIRRQSDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK  401 (493)
Q Consensus       328 ~A~~igAvNti~~~~~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~  401 (493)
                       .+.+-..+..    +-|+++ |.    -.-..|++.-|+..           +.+++||+++|||-+. .|+-++.-|.
T Consensus       114 -~KDVDGl~~~----N~g~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~  177 (282)
T PRK14169        114 -DKDVDGFSPV----SVGRLWANEPTVVASTPYGIMALLDAY-----------DIDVAGKRVVIVGRSNIVGRPLAGLMV  177 (282)
T ss_pred             -ccCcccCChh----hhHHHhcCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHH
Confidence             1111111111    012221 10    12246666766653           2678999999999988 9999999999


Q ss_pred             hCCCeEEEEe-CCh
Q 011136          402 AKGARVVIAN-RTY  414 (493)
Q Consensus       402 ~~g~~i~v~~-R~~  414 (493)
                      ..|+.|+++. ||.
T Consensus       178 ~~~atVtichs~T~  191 (282)
T PRK14169        178 NHDATVTIAHSKTR  191 (282)
T ss_pred             HCCCEEEEECCCCC
Confidence            9999999985 554

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=94.85  E-value=0.036  Score=49.45  Aligned_cols=46  Identities=24%  Similarity=0.217  Sum_probs=36.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeE-EEEeCChHHHHHHHHHhhhh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARV-VIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i-~v~~R~~~~a~~la~~~~~~  427 (493)
                      -++-|||+|-+|.+++.+|.+.|++| -|++|+.+.++++++.+...
T Consensus        11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~   57 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAG   57 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccc
Confidence            47999999999999999999999954 57799999998888776643

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=94.82  E-value=0.085  Score=54.48  Aligned_cols=45  Identities=20%  Similarity=0.127  Sum_probs=38.8

Q ss_pred             CCEEEEEecchHHHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~-g~-~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++.|||+|.+|++-+.++... .. +|+|++|+.++++.+++.+.
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~  174 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS  174 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH
Confidence            47899999999999988777654 34 99999999999999998765

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.81  E-value=0.72  Score=46.78  Aligned_cols=137  Identities=20%  Similarity=0.252  Sum_probs=86.0

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  329 (493)
                      .-++| +|-+++.- ..-..+++++|++.....++.    +++.+.++.+ .+++..|.-|-.|.-..    +|+    -
T Consensus        31 iI~vg~d~as~~Yv-~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~----i~~----~  101 (287)
T PRK14181         31 VVLIGNDPASEVYV-GMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKH----LDA----Q  101 (287)
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----cCH----H
Confidence            34556 33333333 334567899999987776654    3677777777 56789999999997532    221    1


Q ss_pred             HHhcceeeEEEec-----cCCeEE-EE-----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHH
Q 011136          330 KSIGAVNCIIRRQ-----SDGKLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALA  397 (493)
Q Consensus       330 ~~igAvNti~~~~-----~~g~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~  397 (493)
                      +.+.+++.-.--+     +-|+++ |.     -.-..|++.-|+..           +.+++||+|+|+|-+. .|+-++
T Consensus       102 ~i~~~I~p~KDVDGl~p~n~g~l~~g~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla  170 (287)
T PRK14181        102 AILQAISPDKDVDGLHPVNMGKLLLGETDGFIPCTPAGIIELLKYY-----------EIPLHGRHVAIVGRSNIVGKPLA  170 (287)
T ss_pred             HHHhccCcccCcccCChhhHHHHhcCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHH
Confidence            2222332221110     012222 21     11246677776652           2678999999999988 999999


Q ss_pred             HHHHhC----CCeEEEEeC
Q 011136          398 YGAKAK----GARVVIANR  412 (493)
Q Consensus       398 ~~L~~~----g~~i~v~~R  412 (493)
                      .-|.+.    ++.|+++..
T Consensus       171 ~lL~~~~~~~~AtVtvchs  189 (287)
T PRK14181        171 ALLMQKHPDTNATVTLLHS  189 (287)
T ss_pred             HHHHhCcCCCCCEEEEeCC
Confidence            999888    679999874

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=94.81  E-value=3.5  Score=45.14  Aligned_cols=226  Identities=15%  Similarity=0.125  Sum_probs=138.4

Q ss_pred             ccccccCCCCCcE-EEEeecCCCHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEE
Q 011136           13 KLVSGGMRKNPTL-ICVPIMGESVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFT   83 (493)
Q Consensus        13 ~~~~~~~~~~~~~-Icv~l~~~~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T   83 (493)
                      +|..-++++..-- .++.+   +.++++.-++.+-+.|.+.+|.-    .|-   +..-++.+.++.+++.. +.|+-.-
T Consensus         6 ~i~DTTLRDG~QSl~atr~---~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL   82 (499)
T PRK12330          6 GVTELALRDAHQSLMATRM---AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQML   82 (499)
T ss_pred             EEEECCccchhhcccCccC---CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEE
Confidence            3444455544322 33444   44555555555556799999996    563   11225567788887654 6777777


Q ss_pred             eccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc-chhHHHh-hcCCCCcEE--EEEcccCCCCC--CHHHHHH
Q 011136           84 YRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR-EFNDSIR-GKKPEKCKV--IVSSHNYQYTP--SVEDLSN  157 (493)
Q Consensus        84 ~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~-~~~~~l~-~~~~~~~ki--I~S~H~f~~tp--~~~el~~  157 (493)
                      +|..+==|-..-+++.....++.+.+.|+|.+-|=....+ +.++... ..++.+..+  -++|-   ..|  +.+.+.+
T Consensus        83 ~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt---~sp~~t~e~~~~  159 (499)
T PRK12330         83 LRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYT---VSPIHTVEGFVE  159 (499)
T ss_pred             EcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEe---cCCCCCHHHHHH
Confidence            8866556666667777778899999999999887544332 2222221 222233333  33431   123  4567899


Q ss_pred             HHHHHHHcCCCEEEEEeec--CCHhHHHHHHHHhccC---CCCEEEEe--cCCcchhhhhhccccCCcccccccCCCcCC
Q 011136          158 LVARIQASGADIVKFATTA--LDITDVARVFQITVHS---QVPIIGLV--MGERGLISRILCAKFGGFLTFGTLENGIVS  230 (493)
Q Consensus       158 ~~~~~~~~gaDIvKia~~a--~s~~D~~~l~~~~~~~---~~PlIa~~--MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~s  230 (493)
                      ..+++.+.|||.+-|+=|+  -+|.+..++.+.+++.   +.|+-.-+  +--++..+-+..-.-|.-.-=+++.. -+-
T Consensus       160 ~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~G-lg~  238 (499)
T PRK12330        160 QAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISS-MSL  238 (499)
T ss_pred             HHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeeccc-ccc
Confidence            9999999999998888665  4578888888876543   46665443  22233344443434454433344443 245


Q ss_pred             CCCCCCHHhHHHHhh
Q 011136          231 APGQPTIKDLLDLYN  245 (493)
Q Consensus       231 APGQ~~i~~l~~~~~  245 (493)
                      .+||++.+++...++
T Consensus       239 ~aGn~atE~vv~~L~  253 (499)
T PRK12330        239 GPGHNPTESLVEMLE  253 (499)
T ss_pred             cccchhHHHHHHHHH
Confidence            789999998887776

>PRK06199 ornithine cyclodeaminase; Validated

Probab=94.77  E-value=0.077  Score=55.99  Aligned_cols=46  Identities=22%  Similarity=0.250  Sum_probs=40.7

Q ss_pred             CCEEEEEecchHHHHHHHHHHhC--CC-eEEEEeCChHHHHHHHHHhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAK--GA-RVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~--g~-~i~v~~R~~~~a~~la~~~~~  426 (493)
                      -+++.|+|+|..|+.-+.++...  .. +|+|+||+.++++++++.+..
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~  203 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAE  203 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHH
Confidence            47899999999999999998773  36 999999999999999988764

>PRK05993 short chain dehydrogenase; Provisional

Probab=94.77  E-value=0.064  Score=53.37  Aligned_cols=42  Identities=19%  Similarity=0.270  Sum_probs=37.8

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      +|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~   46 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA   46 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            578999998 889999999999999999999999988877654

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.76  E-value=0.47  Score=48.12  Aligned_cols=121  Identities=22%  Similarity=0.341  Sum_probs=78.8

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec-----
Q 011136          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----  342 (493)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~-----  342 (493)
                      -..++++|++.....++.    +++.+.++.+ .+++..|.-|-+|....    +|+    -+.+.+++.-.--+     
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~----id~----~~i~~~I~p~KDVDGl~~~  125 (288)
T PRK14171         54 IKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSS----IDK----NKILSAVSPSKDIDGFHPL  125 (288)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCC----CCH----HHHHhccCcccccccCCcc
Confidence            567889999987766653    3577777766 46789999999997532    221    12223333222110     


Q ss_pred             cCCeEE-EE-----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeC
Q 011136          343 SDGKLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (493)
Q Consensus       343 ~~g~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R  412 (493)
                      +-|++. |.     -.--.|++.-|+..           +.+++||+++|+|-+. .|+-++.-|.+.|+.|+++..
T Consensus       126 N~g~l~~g~~~~~~PcTp~av~~lL~~y-----------~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs  191 (288)
T PRK14171        126 NVGYLHSGISQGFIPCTALGCLAVIKKY-----------EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHS  191 (288)
T ss_pred             chhhhhcCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence            012322 11     11245666666543           2678999999999988 999999999999999998873

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=94.75  E-value=1.8  Score=41.50  Aligned_cols=145  Identities=17%  Similarity=0.124  Sum_probs=88.1

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 011136           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (493)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~  111 (493)
                      ..+.+++.+-++++.+.++|+|-+.--++.      ......+... ..+-+.-..+.|.   ...+....-.+.+++.|
T Consensus        13 ~~t~~~i~~~~~~a~~~~~~av~v~p~~v~------~~~~~l~~~~-~~v~~~~~fp~g~---~~~~~k~~eve~A~~~G   82 (203)
T cd00959          13 DATEEDIRKLCDEAKEYGFAAVCVNPCFVP------LAREALKGSG-VKVCTVIGFPLGA---TTTEVKVAEAREAIADG   82 (203)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEcHHHHH------HHHHHcCCCC-cEEEEEEecCCCC---CcHHHHHHHHHHHHHcC
Confidence            457888888888887778898877532211      1222222222 3344443334443   23456666688999999


Q ss_pred             CcEEEEEcccc-------cchhHH---Hhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE--e--ec
Q 011136          112 ADYIDVELQVA-------REFNDS---IRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA--T--TA  176 (493)
Q Consensus       112 ~dyIDIEl~~~-------~~~~~~---l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia--~--~a  176 (493)
                      +|-||+=++..       +...++   +.. .+.-..|+|.-....    +.+++....+-+.++|||++|..  .  ..
T Consensus        83 Adevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l----~~~~i~~a~ria~e~GaD~IKTsTG~~~~~  158 (203)
T cd00959          83 ADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL----TDEEIIKACEIAIEAGADFIKTSTGFGPGG  158 (203)
T ss_pred             CCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC----CHHHHHHHHHHHHHhCCCEEEcCCCCCCCC
Confidence            99999966653       112333   332 222234555543322    35678888888999999999987  3  34


Q ss_pred             CCHhHHHHHHHHhc
Q 011136          177 LDITDVARVFQITV  190 (493)
Q Consensus       177 ~s~~D~~~l~~~~~  190 (493)
                      -+++|+..+.+..+
T Consensus       159 at~~~v~~~~~~~~  172 (203)
T cd00959         159 ATVEDVKLMKEAVG  172 (203)
T ss_pred             CCHHHHHHHHHHhC
Confidence            56788877766654

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.72  E-value=0.36  Score=48.99  Aligned_cols=138  Identities=20%  Similarity=0.295  Sum_probs=85.4

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  329 (493)
                      .-++| +|-+.+.--.. -..++++|++.....++-    +++.+.++.+ .+++..|.-|-+|.-..    +|+.    
T Consensus        34 ii~vg~d~as~~Yv~~k-~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~----i~~~----  104 (287)
T PRK14173         34 VVRLGEDPASVSYVRLK-DRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPH----IDFQ----  104 (287)
T ss_pred             EEEeCCCHHHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCHH----
Confidence            44566 33333333223 456889999988777653    3577777777 45789999999997532    2211    


Q ss_pred             HHhcceeeEEEec-----cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHH
Q 011136          330 KSIGAVNCIIRRQ-----SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAY  398 (493)
Q Consensus       330 ~~igAvNti~~~~-----~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~  398 (493)
                      +.+.+++.-.--+     +-|+++ |.    -.-..|++.-|+..           +.+++||+|+|+|.+. .|+-++.
T Consensus       105 ~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~  173 (287)
T PRK14173        105 RVLEAIDPLKDVDGFHPLNVGRLWMGGEALEPCTPAGVVRLLKHY-----------GIPLAGKEVVVVGRSNIVGKPLAA  173 (287)
T ss_pred             HHHhccCccccccccChhhhHHHhcCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCCccHHHHHH
Confidence            2223333221110     012221 11    11245666666542           2678999999999988 9999999


Q ss_pred             HHHhCCCeEEEEeCC
Q 011136          399 GAKAKGARVVIANRT  413 (493)
Q Consensus       399 ~L~~~g~~i~v~~R~  413 (493)
                      -|...|+.|+++.+.
T Consensus       174 lL~~~~aTVtichs~  188 (287)
T PRK14173        174 LLLREDATVTLAHSK  188 (287)
T ss_pred             HHHHCCCEEEEeCCC
Confidence            999999999988653

>PTZ00117 malate dehydrogenase; Provisional

Probab=94.71  E-value=0.2  Score=51.60  Aligned_cols=77  Identities=17%  Similarity=0.080  Sum_probs=51.0

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEE--eecccccCCceEEEEe
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVI--RILLFTWHLKFFIAAN  456 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~--~~l~~~~~~~~~i~~n  456 (493)
                      +.+++.|+|+|.+|.++++.++..|. +|.+++++.++++..+-++....  .......+|.  .+.+ .. .+.++++.
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~--~~~~~~~~i~~~~d~~-~l-~~ADiVVi   79 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFS--TLVGSNINILGTNNYE-DI-KDSDVVVI   79 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhc--cccCCCeEEEeCCCHH-Hh-CCCCEEEE
Confidence            35689999999999999999999895 99999999888765554443322  1111122332  2322 33 56677777


Q ss_pred             cccc
Q 011136          457 IIHL  460 (493)
Q Consensus       457 ~tpl  460 (493)
                      +...
T Consensus        80 tag~   83 (319)
T PTZ00117         80 TAGV   83 (319)
T ss_pred             CCCC
Confidence            6643

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.70  E-value=0.15  Score=50.47  Aligned_cols=42  Identities=17%  Similarity=0.248  Sum_probs=37.5

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC---eEEEEeCChHHHHHHHHHh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA---RVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~---~i~v~~R~~~~a~~la~~~  424 (493)
                      ++.|||+|-+|++++.+|.+.|.   .+.+++|+.++++++++.+
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~   46 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERF   46 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHc
Confidence            58899999999999999998884   5789999999999988865

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.70  E-value=0.068  Score=53.11  Aligned_cols=45  Identities=18%  Similarity=0.267  Sum_probs=35.9

Q ss_pred             cCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++|.++|.|++   |.|++++..|++.|++|++..|+ ++.++.++.+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~-~~~~~~~~~~   51 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEF   51 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc-hhHHHHHHHH
Confidence            568999999986   89999999999999999999887 3433333433

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=94.69  E-value=0.085  Score=51.58  Aligned_cols=48  Identities=27%  Similarity=0.404  Sum_probs=42.1

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|.+.|++++++.|+.++.+++++.+.
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~   56 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ   56 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence            466899999987 779999999999999999999999988888877654

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=94.69  E-value=0.083  Score=51.93  Aligned_cols=49  Identities=22%  Similarity=0.406  Sum_probs=40.0

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEe-CChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~-R~~~~a~~la~~~~  425 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|+++. |+.++++.+++.+.
T Consensus         4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~   54 (260)
T PRK08416          4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLE   54 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            3567899999998 7899999999999999888775 56777777766554

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.65  E-value=0.074  Score=53.78  Aligned_cols=41  Identities=22%  Similarity=0.241  Sum_probs=36.9

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++|.|||+|-||.+++..|+..|++|++++|+.++.++..+
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~   44 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAME   44 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence            57999999999999999999999999999999988776544

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.65  E-value=0.091  Score=50.67  Aligned_cols=47  Identities=28%  Similarity=0.349  Sum_probs=40.5

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++++++|.|+ ||.|++++..|.+.|++|.+++|+.++.+++++.+.
T Consensus         5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~   52 (239)
T PRK07666          5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVE   52 (239)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            45789999997 679999999999999999999999988877766653

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.64  E-value=0.043  Score=54.22  Aligned_cols=35  Identities=23%  Similarity=0.360  Sum_probs=31.5

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~  413 (493)
                      +++++|+|+|+||.|..++..|+..|+ +|++++++
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            557899999999999999999999999 99997753

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=94.62  E-value=0.36  Score=49.25  Aligned_cols=122  Identities=18%  Similarity=0.230  Sum_probs=79.0

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec-----
Q 011136          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----  342 (493)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~-----  342 (493)
                      ...++++|++..-..++-    +++.+.++.+ .+++..|.-|-.|.-.    ++|+    -+.+.+++.-.--+     
T Consensus        61 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~----~id~----~~i~~~I~p~KDVDGl~~~  132 (299)
T PLN02516         61 RKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPK----HINE----EKILNEISLEKDVDGFHPL  132 (299)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCC----CcCH----HHHHhccCcccccCccCHh
Confidence            456889999876555542    4677777777 5688999999999642    2221    12223333221110     


Q ss_pred             cCCeEE-E--E----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeCC
Q 011136          343 SDGKLF-G--Y----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       343 ~~g~l~-G--~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R~  413 (493)
                      +-|++. |  .    -.-..|++.-|+..           +.+++||+|+|||-+. .|+-++.-|...|+.|+++...
T Consensus       133 n~g~l~~~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~  200 (299)
T PLN02516        133 NIGKLAMKGREPLFLPCTPKGCLELLSRS-----------GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR  200 (299)
T ss_pred             hHhhHhcCCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC
Confidence            013332 2  1    11245666666542           2678999999999988 9999999999999999998753

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=94.58  E-value=1.8  Score=41.87  Aligned_cols=118  Identities=19%  Similarity=0.155  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCC-CCCCCCHHHHHHHHHHHHHhCC
Q 011136           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEG-GQYDGDENERVDVLRLAMELGA  112 (493)
Q Consensus        34 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eG-G~~~~~~~~~~~ll~~~l~~~~  112 (493)
                      +.++...-++.+...|+-++++.  -      .+.++.+++.+.+|+|...|....+ -.+...   ..+.++.+.+.|+
T Consensus        21 ~~~~~~~~a~a~~~~G~~~~~~~--~------~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~---~~~~v~~a~~aGa   89 (221)
T PRK01130         21 SPEIMAAMALAAVQGGAVGIRAN--G------VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITP---TLKEVDALAAAGA   89 (221)
T ss_pred             CHHHHHHHHHHHHHCCCeEEEcC--C------HHHHHHHHHhCCCCEEEEEecCCCCCCceECC---CHHHHHHHHHcCC
Confidence            34445555555556788888862  1      3467777777899998776632111 122111   2234677888999


Q ss_pred             cEEEEEccc---cc-chhHHHh-hcCC-CCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          113 DYIDVELQV---AR-EFNDSIR-GKKP-EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       113 dyIDIEl~~---~~-~~~~~l~-~~~~-~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      |+|-+++..   +. +...++. ..++ .+..++...|      +.+++    .++.+.|+|++.+
T Consensus        90 d~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~------t~ee~----~~a~~~G~d~i~~  145 (221)
T PRK01130         90 DIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS------TLEEG----LAAQKLGFDFIGT  145 (221)
T ss_pred             CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC------CHHHH----HHHHHcCCCEEEc
Confidence            999887754   21 2223333 2344 6888888766      23333    5778899999876

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.57  E-value=0.1  Score=57.28  Aligned_cols=41  Identities=27%  Similarity=0.347  Sum_probs=37.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++|.|||+|-||+.++..|+..|++|++++|+.++.++..+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~   48 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARD   48 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence            68999999999999999999999999999999999887533

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=94.56  E-value=0.085  Score=50.92  Aligned_cols=47  Identities=30%  Similarity=0.482  Sum_probs=40.1

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +.+++++|.|+ |+.|++++..|.+.|++|+++.|+.++...+.+.+.
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~   51 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVE   51 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            45789999996 779999999999999999999999887777666544

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=94.56  E-value=0.76  Score=44.27  Aligned_cols=144  Identities=20%  Similarity=0.235  Sum_probs=79.8

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCC-CCCch-hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHH---HHHH
Q 011136           32 GESVDKMVVDMGKANASGADLVEIRLDGLK-NFNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVD---VLRL  106 (493)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~---ll~~  106 (493)
                      ..+++++.    .+.+.|||-|||.-++-. .+.|+ ..++.+++..++|+-+-+|+  .+|.|--++++...   -++.
T Consensus         7 v~s~~~a~----~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRp--r~gdF~Ys~~E~~~M~~dI~~   80 (201)
T PF03932_consen    7 VESLEDAL----AAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRP--RGGDFVYSDEEIEIMKEDIRM   80 (201)
T ss_dssp             ESSHHHHH----HHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--S--SSS-S---HHHHHHHHHHHHH
T ss_pred             eCCHHHHH----HHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECC--CCCCccCCHHHHHHHHHHHHH
Confidence            34555443    445779999999987643 34442 35666777789999999995  35666666655433   3556


Q ss_pred             HHHhCCcEEEE-----EcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHhH
Q 011136          107 AMELGADYIDV-----ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITD  181 (493)
Q Consensus       107 ~l~~~~dyIDI-----El~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~~D  181 (493)
                      +.++|++-+-+     +-..+.+..+.+... .++..+..+. .|+.+++   ..+-++++.++|.|-|==..-+.+..|
T Consensus        81 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~-a~~~~~tFHR-AfD~~~d---~~~al~~L~~lG~~rVLTSGg~~~a~~  155 (201)
T PF03932_consen   81 LRELGADGFVFGALTEDGEIDEEALEELIEA-AGGMPVTFHR-AFDEVPD---PEEALEQLIELGFDRVLTSGGAPTALE  155 (201)
T ss_dssp             HHHTT-SEEEE--BETTSSB-HHHHHHHHHH-HTTSEEEE-G-GGGGSST---HHHHHHHHHHHT-SEEEESTTSSSTTT
T ss_pred             HHHcCCCeeEEEeECCCCCcCHHHHHHHHHh-cCCCeEEEeC-cHHHhCC---HHHHHHHHHhcCCCEEECCCCCCCHHH
Confidence            66788887655     233445566677753 3577776633 3888887   455677777778764433333334444


Q ss_pred             HHHHH
Q 011136          182 VARVF  186 (493)
Q Consensus       182 ~~~l~  186 (493)
                      ....+
T Consensus       156 g~~~L  160 (201)
T PF03932_consen  156 GIENL  160 (201)
T ss_dssp             CHHHH
T ss_pred             HHHHH
Confidence            43333

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.56  E-value=0.071  Score=53.18  Aligned_cols=47  Identities=17%  Similarity=0.219  Sum_probs=37.7

Q ss_pred             ccCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCCh---HHHHHHHHHh
Q 011136          378 ALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY---GESLTFLRLM  424 (493)
Q Consensus       378 ~l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~---~~a~~la~~~  424 (493)
                      -+++|.++|.|+   +|.|++++..|++.|++|++..|+.   ++.+++++.+
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~   59 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAEL   59 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhc
Confidence            356899999998   5999999999999999999988873   4455555544

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.55  E-value=0.043  Score=48.94  Aligned_cols=32  Identities=28%  Similarity=0.595  Sum_probs=28.9

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R  412 (493)
                      .++|+|+|+||.|..++..|+..|+ +++|++.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~   34 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD   34 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence            4789999999999999999999999 9999874

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK08605 D-lactate dehydrogenase; Validated

Probab=94.54  E-value=0.081  Score=54.78  Aligned_cols=93  Identities=15%  Similarity=0.020  Sum_probs=58.7

Q ss_pred             cccCCCEEEEEecchHHHHHHHHH-HhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGA-KAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L-~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      ..+.|+++.|||.|.+|++++..| ...|++|+.++|+..+..  .....             ...++++-+ ++.++++
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~~~~~-------------~~~~l~ell-~~aDvIv  205 (332)
T PRK08605        142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--ATYVD-------------YKDTIEEAV-EGADIVT  205 (332)
T ss_pred             ceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--Hhhcc-------------ccCCHHHHH-HhCCEEE
Confidence            467899999999999999999998 456789999999865431  11100             012333333 4567777


Q ss_pred             eccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          456 NIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       456 n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      .++|+.-....+..  ...+..+-++.++.+-
T Consensus       206 l~lP~t~~t~~li~--~~~l~~mk~gailIN~  235 (332)
T PRK08605        206 LHMPATKYNHYLFN--ADLFKHFKKGAVFVNC  235 (332)
T ss_pred             EeCCCCcchhhhcC--HHHHhcCCCCcEEEEC
Confidence            77777665554432  1234444456666654

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=94.53  E-value=0.12  Score=52.56  Aligned_cols=76  Identities=20%  Similarity=0.137  Sum_probs=53.3

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhhhcccccceEE
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLLLNTLLFDSVI  438 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~~~~~~~~~~~  438 (493)
                      +.+.+|||+|+||.|..++..|+..|+ +|+|++-+                   ..||+..++.+...+.    .-+++
T Consensus        17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp----~V~V~   92 (286)
T cd01491          17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNP----YVPVT   92 (286)
T ss_pred             HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCC----CCEEE
Confidence            446799999999999999999999999 99998743                   3566666666665542    22444


Q ss_pred             EEee-cccccCCceEEEEecc
Q 011136          439 VIRI-LLFTWHLKFFIAANII  458 (493)
Q Consensus       439 v~~~-l~~~~~~~~~i~~n~t  458 (493)
                      +... +.+.+-.++++++.++
T Consensus        93 ~~~~~~~~~~l~~fdvVV~~~  113 (286)
T cd01491          93 VSTGPLTTDELLKFQVVVLTD  113 (286)
T ss_pred             EEeccCCHHHHhcCCEEEEec
Confidence            4432 2233446788888665

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=94.50  E-value=3.8  Score=45.82  Aligned_cols=210  Identities=14%  Similarity=0.140  Sum_probs=132.2

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136           34 SVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (493)
Q Consensus        34 ~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (493)
                      +.++.+.-++.+.+.|.+.+|.-    .|.   +..-++.+.++.+++. .+.++..-+|..+--|...-+++...+.++
T Consensus        19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~   98 (582)
T TIGR01108        19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVK   98 (582)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHH
Confidence            34555555666667799999995    442   1122456677777653 357777778866666655556666777889


Q ss_pred             HHHHhCCcEEEEEccccc--chhHHHhhcCCCCcEEEEEcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 011136          106 LAMELGADYIDVELQVAR--EFNDSIRGKKPEKCKVIVSSHNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--LDI  179 (493)
Q Consensus       106 ~~l~~~~dyIDIEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tp--~~~el~~~~~~~~~~gaDIvKia~~a--~s~  179 (493)
                      .+++.|+|.+-|=....+  .....+..++..+..+.++... ..+|  +.+.+.+..+++.+.|||.+-|+=|+  -++
T Consensus        99 ~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~-t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P  177 (582)
T TIGR01108        99 KAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISY-TTSPVHTLETYLDLAEELLEMGVDSICIKDMAGILTP  177 (582)
T ss_pred             HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEe-ccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCH
Confidence            999999998887654432  1222232334456666655221 2255  66789999999999999998887555  457


Q ss_pred             hHHHHHHHHhcc-CCCCEEE--EecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136          180 TDVARVFQITVH-SQVPIIG--LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (493)
Q Consensus       180 ~D~~~l~~~~~~-~~~PlIa--~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~  245 (493)
                      .++.++.+.+++ .+.|+-.  -++--+|..+-+..-.-|....=+++.. -.-..||++++++...++
T Consensus       178 ~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~G-lG~~tGn~~le~vv~~L~  245 (582)
T TIGR01108       178 KAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGADGIDTAISS-MSGGTSHPPTETMVAALR  245 (582)
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCEEEecccc-ccccccChhHHHHHHHHH
Confidence            888888877554 2455443  3444445455554444454433334332 234689999988777665

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=94.48  E-value=0.1  Score=51.13  Aligned_cols=48  Identities=31%  Similarity=0.371  Sum_probs=41.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|++||.|+ |+.|++++..|.+.|++|+++.|+.++.+.+.+.+.
T Consensus         9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~   57 (259)
T PRK08213          9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLE   57 (259)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence            456899999996 889999999999999999999999888777766554

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.47  E-value=0.14  Score=52.76  Aligned_cols=80  Identities=16%  Similarity=-0.012  Sum_probs=51.5

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      +.+++.|||||.+|.++++.++..|. +|+++++++++++.-+-++..........-+++.-.+. +.. .+.++++++.
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l-~~aDiVI~ta   82 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDI-AGSDVVIVTA   82 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHh-CCCCEEEECC
Confidence            34789999999999999999999996 99999999987654333322221000001133322333 233 6778888766


Q ss_pred             ccC
Q 011136          459 HLG  461 (493)
Q Consensus       459 plG  461 (493)
                      ..+
T Consensus        83 g~~   85 (321)
T PTZ00082         83 GLT   85 (321)
T ss_pred             CCC
Confidence            553

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=94.45  E-value=0.1  Score=50.71  Aligned_cols=46  Identities=30%  Similarity=0.429  Sum_probs=40.5

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++|+++|.|+ |+.|++++..|.+.|.+|+++.|+.++.+++.+.+.
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~   49 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQ   49 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence            4689999996 889999999999999999999999998888776553

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.45  E-value=0.084  Score=56.14  Aligned_cols=44  Identities=36%  Similarity=0.462  Sum_probs=39.0

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTF  420 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~l  420 (493)
                      ..+.|++|+|+|+|..|+.++..++..|++|+++++++.++...
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A  234 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA  234 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH
Confidence            34679999999999999999999999999999999998876443

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.45  E-value=0.5  Score=47.79  Aligned_cols=138  Identities=20%  Similarity=0.269  Sum_probs=86.9

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  329 (493)
                      .-++| +|-+.+.-- .-..+++++|++.....++.    +++.+.++.+ .++++.|.-|-.|....    +|+    -
T Consensus        35 iI~vg~d~as~~Yv~-~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~----i~~----~  105 (282)
T PRK14182         35 VVRVGDDPASAIYVR-GKRKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKH----VDE----R  105 (282)
T ss_pred             EEEeCCCHHHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH----H
Confidence            34555 333333332 23456899999987766653    3677777777 56789999999997532    221    1


Q ss_pred             HHhcceeeEEEec-----cCCeEE-EE-----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHH
Q 011136          330 KSIGAVNCIIRRQ-----SDGKLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALA  397 (493)
Q Consensus       330 ~~igAvNti~~~~-----~~g~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~  397 (493)
                      +.+.+++.-.--+     +-|+++ |.     -.-..|++.-|+..           +.+++||+++|+|-+. .|+-++
T Consensus       106 ~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~avi~ll~~~-----------~i~l~Gk~vvViGrS~iVGkPla  174 (282)
T PRK14182        106 AVLDAISPAKDADGFHPFNVGALSIGIAGVPRPCTPAGVMRMLDEA-----------RVDPKGKRALVVGRSNIVGKPMA  174 (282)
T ss_pred             HHHhccCcccCcCCCCHhHHHHHhCCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHH
Confidence            2333333322110     012221 11     12256777777653           2678999999999988 999999


Q ss_pred             HHHHhCCCeEEEEeCC
Q 011136          398 YGAKAKGARVVIANRT  413 (493)
Q Consensus       398 ~~L~~~g~~i~v~~R~  413 (493)
                      .-|.+.|+.|+++...
T Consensus       175 ~lL~~~~AtVtichs~  190 (282)
T PRK14182        175 MMLLERHATVTIAHSR  190 (282)
T ss_pred             HHHHHCCCEEEEeCCC
Confidence            9999999999988753

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.42  E-value=0.081  Score=47.67  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=34.1

Q ss_pred             EEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++|+|+|++|...++.|++.|++|+++.|.. +++.+.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~   38 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE   38 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh
Confidence            6899999999999999999999999999998 7777544

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.42  E-value=0.1  Score=50.24  Aligned_cols=47  Identities=38%  Similarity=0.541  Sum_probs=40.3

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~-~R~~~~a~~la~~~~  425 (493)
                      +.+|+++|.|+ |+.|+.++..|++.|++++++ .|+.++.+.+.+.+.
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~   51 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIK   51 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            55789999997 899999999999999988888 999888877776554

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.42  E-value=0.1  Score=57.00  Aligned_cols=41  Identities=17%  Similarity=0.065  Sum_probs=37.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++|.|||+|-||.+++..|+..|++|++++|++++.+.+.+
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~   45 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGE   45 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence            57999999999999999999999999999999999877654

>PLN02712 arogenate dehydrogenase

Probab=94.42  E-value=0.15  Score=57.84  Aligned_cols=39  Identities=21%  Similarity=0.208  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      ..++++++.|||.|.+|++++.+|.+.|.+|++++|+..
T Consensus       365 ~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~  403 (667)
T PLN02712        365 NDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY  403 (667)
T ss_pred             CCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH
Confidence            345678999999999999999999999999999999854

>PRK06720 hypothetical protein; Provisional

Probab=94.40  E-value=0.12  Score=48.33  Aligned_cols=48  Identities=27%  Similarity=0.459  Sum_probs=41.1

Q ss_pred             ccCCCEEEEEecc-hHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGaG-Gaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|.++|.|++ |.|++++..|.+.|++|++++|+.+..++.++.+.
T Consensus        13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~   61 (169)
T PRK06720         13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEIT   61 (169)
T ss_pred             ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            4678999999985 69999999999999999999999888777766554

>PRK12742 oxidoreductase; Provisional

Probab=94.39  E-value=0.1  Score=50.11  Aligned_cols=47  Identities=21%  Similarity=0.309  Sum_probs=38.0

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R-~~~~a~~la~~~~  425 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|+++.| +.++.+++.+.++
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~   52 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETG   52 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhC
Confidence            56899999997 88999999999999998877654 6677777766543

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=94.39  E-value=1.4  Score=44.82  Aligned_cols=85  Identities=22%  Similarity=0.286  Sum_probs=58.5

Q ss_pred             CCcEEEEeecCC-CHHHHHHHHHhhhhcCCCEEEEEecCCCC-----------CCc---hhHHHHHHhhCCCcEEEEecc
Q 011136           22 NPTLICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKN-----------FNP---RENIKTLIKESPVPTLFTYRP   86 (493)
Q Consensus        22 ~~~~Icv~l~~~-~~~e~~~~~~~~~~~~aD~vElRlD~l~~-----------~~~---~~~l~~l~~~~~~PiI~T~R~   86 (493)
                      ..|.| +++.++ +.++..+-++.+.+.|+|++||-+.+-..           .++   .+.++.+++..++|+.+-+|.
T Consensus        99 ~~p~i-~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~  177 (299)
T cd02940          99 DKILI-ASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTP  177 (299)
T ss_pred             CCeEE-EEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCC
Confidence            35555 688888 99999888888766799999998875321           011   123444555568999988874


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCcEEE
Q 011136           87 IWEGGQYDGDENERVDVLRLAMELGADYID  116 (493)
Q Consensus        87 ~~eGG~~~~~~~~~~~ll~~~l~~~~dyID  116 (493)
                      .         .....++.+.+.+.|++.|.
T Consensus       178 ~---------~~~~~~~a~~~~~~Gadgi~  198 (299)
T cd02940         178 N---------ITDIREIARAAKEGGADGVS  198 (299)
T ss_pred             C---------chhHHHHHHHHHHcCCCEEE
Confidence            1         12455677777888999885

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.37  E-value=0.79  Score=46.69  Aligned_cols=138  Identities=17%  Similarity=0.240  Sum_probs=86.0

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  329 (493)
                      .-++| +|-+++.-- .-...++++|++.....++.    +++.+.++.+ .+++..|.-|-.|...    ++|+    -
T Consensus        37 iI~vg~d~as~~Yv~-~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~----~i~~----~  107 (294)
T PRK14187         37 VILVGDDPASQLYVR-NKQRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPN----HIDK----N  107 (294)
T ss_pred             EEEeCCChhHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH----H
Confidence            44556 343333332 33567899999987766653    3576677777 5678999999999852    2221    1


Q ss_pred             HHhcceeeEEEec-----cCCeEE-EEe------ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHH
Q 011136          330 KSIGAVNCIIRRQ-----SDGKLF-GYN------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKAL  396 (493)
Q Consensus       330 ~~igAvNti~~~~-----~~g~l~-G~N------TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~  396 (493)
                      +.+.+++.-.--+     +-|+++ |.+      .-..|++.-|+..           +.+++||+++|+|.+. .|+-+
T Consensus       108 ~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPl  176 (294)
T PRK14187        108 LIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTI-----------TRNLSGSDAVVIGRSNIVGKPM  176 (294)
T ss_pred             HHHhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHH
Confidence            1222222221110     012221 221      1256666666652           2678999999999988 99999


Q ss_pred             HHHHHhCCCeEEEEeCC
Q 011136          397 AYGAKAKGARVVIANRT  413 (493)
Q Consensus       397 ~~~L~~~g~~i~v~~R~  413 (493)
                      +.-|.+.|+.|+++...
T Consensus       177 a~lL~~~~aTVt~chs~  193 (294)
T PRK14187        177 ACLLLGENCTVTTVHSA  193 (294)
T ss_pred             HHHHhhCCCEEEEeCCC
Confidence            99999999999988763

>PRK08251 short chain dehydrogenase; Provisional

Probab=94.37  E-value=0.11  Score=50.36  Aligned_cols=45  Identities=20%  Similarity=0.273  Sum_probs=39.6

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|+++|.|+ ||.|++++..|.+.|++|++..|+.++.+++.+.+.
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~   47 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELL   47 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence            578999985 889999999999999999999999998888876554

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.37  E-value=0.57  Score=47.37  Aligned_cols=140  Identities=20%  Similarity=0.305  Sum_probs=84.3

Q ss_pred             EEeecC-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHH--hhhhhhhcH
Q 011136          256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDT  327 (493)
Q Consensus       256 ~~viG~-pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~  327 (493)
                      .-++|+ |-+++.- ..-..+++++|++..-..++-    +++.+.++.+ .+++..|+-|-.|....+  -..++.+++
T Consensus        36 ii~vgdd~as~~Yv-~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p  114 (281)
T PRK14183         36 VILVGDDPASHTYV-KMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDP  114 (281)
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCc
Confidence            345563 3333333 233557889999876555533    3577777777 568899999999975222  111222222


Q ss_pred             HHHHhcceeeEEEeccCCeE-EEEe----ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHH
Q 011136          328 VAKSIGAVNCIIRRQSDGKL-FGYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK  401 (493)
Q Consensus       328 ~A~~igAvNti~~~~~~g~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~  401 (493)
                       .+.+-..+..-    -|++ .|.+    .-..|++.-|++.           +.+++||+++|+|-+. .|+-++.-|.
T Consensus       115 -~KDVDGl~~~n----~g~l~~g~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~~VG~Pla~lL~  178 (281)
T PRK14183        115 -KKDVDGFHPYN----VGRLVTGLDGFVPCTPLGVMELLEEY-----------EIDVKGKDVCVVGASNIVGKPMAALLL  178 (281)
T ss_pred             -hhcccccChhh----hhHHhcCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCCCcchHHHHHHHH
Confidence             11122221110    1222 1111    1156677766652           2678999999999985 9999999999


Q ss_pred             hCCCeEEEEeC
Q 011136          402 AKGARVVIANR  412 (493)
Q Consensus       402 ~~g~~i~v~~R  412 (493)
                      +.|+.|+++..
T Consensus       179 ~~~AtVti~hs  189 (281)
T PRK14183        179 NANATVDICHI  189 (281)
T ss_pred             HCCCEEEEeCC
Confidence            99999998874

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.36  E-value=0.11  Score=49.75  Aligned_cols=46  Identities=33%  Similarity=0.434  Sum_probs=39.9

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .++++||.|+ |+.|+.++..|.+.|.+|.+++|+.++.+.+...+.
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   50 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELR   50 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHH
Confidence            4688999997 889999999999999999999999988777766554

>PRK07074 short chain dehydrogenase; Provisional

Probab=94.36  E-value=0.1  Score=50.85  Aligned_cols=44  Identities=32%  Similarity=0.398  Sum_probs=39.4

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +|+++|.|+ ||.|++++..|++.|++|++++|+.++.+.+++.+
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~   46 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADAL   46 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            468999998 78999999999999999999999999988887755

>PRK08628 short chain dehydrogenase; Provisional

Probab=94.35  E-value=0.093  Score=51.25  Aligned_cols=47  Identities=28%  Similarity=0.417  Sum_probs=39.1

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      .++++++++|.|+ ||.|++++..|.+.|+++.++.|+.++. ++.+.+
T Consensus         3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~   50 (258)
T PRK08628          3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEEL   50 (258)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHH
Confidence            3577899999997 7799999999999999999999988766 554444

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.35  E-value=0.088  Score=51.96  Aligned_cols=47  Identities=23%  Similarity=0.336  Sum_probs=37.9

Q ss_pred             ccCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCC---hHHHHHHHHHh
Q 011136          378 ALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRT---YGESLTFLRLM  424 (493)
Q Consensus       378 ~l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~---~~~a~~la~~~  424 (493)
                      .+++|.++|.|+   +|.|++++..|++.|++|++.+|+   .++.+++++.+
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~   56 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL   56 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc
Confidence            356899999998   599999999999999999998765   34556665554

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=94.34  E-value=0.11  Score=53.78  Aligned_cols=48  Identities=17%  Similarity=0.167  Sum_probs=42.2

Q ss_pred             CCEEEEEecchHHHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHhhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~-g~-~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      -+...|||+|..|+.-+.++... ++ +|.|++|+++++++++..+....
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~  179 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRG  179 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhc
Confidence            46899999999999999999775 56 99999999999999998777654

>PRK08303 short chain dehydrogenase; Provisional

Probab=94.33  E-value=0.097  Score=53.34  Aligned_cols=48  Identities=33%  Similarity=0.454  Sum_probs=39.1

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh----------HHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY----------GESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~----------~~a~~la~~~~  425 (493)
                      .+++|.++|.|+ +|.|++++.+|++.|++|++++|+.          ++.+++++.+.
T Consensus         5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~   63 (305)
T PRK08303          5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVT   63 (305)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHH
Confidence            467899999998 6899999999999999999999973          45555555543

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=94.33  E-value=0.19  Score=51.69  Aligned_cols=36  Identities=33%  Similarity=0.522  Sum_probs=31.1

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      +++|++.|||+|-+|.+++..|.+.|.++++..|..
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~   36 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKG   36 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcC
Confidence            357899999999999999999999999877766654

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.33  E-value=0.092  Score=52.51  Aligned_cols=36  Identities=17%  Similarity=0.246  Sum_probs=32.5

Q ss_pred             cCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       379 l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      +++|.++|.|+   +|.|++++..|++.|++|++..|+.
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~   41 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNE   41 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCH
Confidence            45799999998   4999999999999999999999985

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=94.32  E-value=5.3  Score=39.28  Aligned_cols=196  Identities=15%  Similarity=0.163  Sum_probs=118.4

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCC-------CchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136           34 SVDKMVVDMGKANASGADLVEIRLDGLKNF-------NPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (493)
Q Consensus        34 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-------~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (493)
                      +.++.++-++.+.+.|+|.||+=.  ....       ++.+.++.+++.. +.++..-+|.    |         .+.++
T Consensus        17 s~e~~~~i~~~L~~~GV~~IEvg~--~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~----~---------~~~i~   81 (265)
T cd03174          17 STEDKLEIAEALDEAGVDSIEVGS--GASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN----R---------EKGIE   81 (265)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecc--CcCccccccCCCHHHHHHHHHhccCCcEEEEEccC----c---------hhhHH
Confidence            667777777777788999999943  2111       2234566665544 4566555653    1         34566


Q ss_pred             HHHHhCCcEEEEEcccc----------------cchhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCC
Q 011136          106 LAMELGADYIDVELQVA----------------REFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGAD  168 (493)
Q Consensus       106 ~~l~~~~dyIDIEl~~~----------------~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~el~~~~~~~~~~gaD  168 (493)
                      .+.+.|++.|-+=+...                +...+.+..+++.+..+.++.-+ +.+.-+.+++.+.++++.++|+|
T Consensus        82 ~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~  161 (265)
T cd03174          82 RALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGAD  161 (265)
T ss_pred             HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCC
Confidence            77788888888866554                11222333345678888888844 43212567899999999999999


Q ss_pred             EEEEEee--cCCHhHHHHHHHHhccC-C-CCEEEEecCCc--chhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHH
Q 011136          169 IVKFATT--ALDITDVARVFQITVHS-Q-VPIIGLVMGER--GLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLD  242 (493)
Q Consensus       169 IvKia~~--a~s~~D~~~l~~~~~~~-~-~PlIa~~MG~~--G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~  242 (493)
                      .+-++-+  .-+++++.++++.+.+. + .|+-.-+=-..  |...-+..-..|....=+++.+ -.-..|+++.+++..
T Consensus       162 ~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G-~G~~~Gn~~~e~~~~  240 (265)
T cd03174         162 EISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNG-LGERAGNAATEDLVA  240 (265)
T ss_pred             EEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEecccc-ccccccCccHHHHHH
Confidence            9988633  35688998888875543 2 44443332222  2222233323343332233332 234688998888776


Q ss_pred             Hhh
Q 011136          243 LYN  245 (493)
Q Consensus       243 ~~~  245 (493)
                      .++
T Consensus       241 ~l~  243 (265)
T cd03174         241 ALE  243 (265)
T ss_pred             HHH
Confidence            655

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>PRK06101 short chain dehydrogenase; Provisional

Probab=94.31  E-value=0.1  Score=50.69  Aligned_cols=42  Identities=24%  Similarity=0.305  Sum_probs=37.2

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      ++++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~   44 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ   44 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence            57899986 8899999999999999999999999888777654

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.31  E-value=0.093  Score=51.69  Aligned_cols=39  Identities=26%  Similarity=0.233  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          377 SALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       377 ~~l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      ..+++|.++|.|++   |.|++++..|++.|++|+++.|+.+
T Consensus         6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~   47 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDK   47 (258)
T ss_pred             cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChh
Confidence            45678999999975   8999999999999999999999854

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.29  E-value=0.16  Score=51.26  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=34.8

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      +++|+|+|.+|.+++..|++.|.+|+++.| .++.+.+.+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~   40 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRE   40 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHh
Confidence            589999999999999999999999999999 777776654

>PRK06914 short chain dehydrogenase; Provisional

Probab=94.29  E-value=0.11  Score=51.37  Aligned_cols=45  Identities=24%  Similarity=0.275  Sum_probs=39.0

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|.++|.|+ ||.|++++..|++.|++|+++.|+.++.+.+.+...
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   48 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQAT   48 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHH
Confidence            578999997 789999999999999999999999988877766543

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=94.29  E-value=7.4  Score=42.13  Aligned_cols=228  Identities=13%  Similarity=0.137  Sum_probs=136.2

Q ss_pred             ccccccCCCCCcEE-EEeecCCCHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhh-CCCcEEEE
Q 011136           13 KLVSGGMRKNPTLI-CVPIMGESVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKE-SPVPTLFT   83 (493)
Q Consensus        13 ~~~~~~~~~~~~~I-cv~l~~~~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T   83 (493)
                      +|..-++++..--. +..++   .++.+.-++.+.+.|.+.+|.-    .|.   +..-++.+.++.+++. .+.++..-
T Consensus         5 ~I~DtTlRDG~Qs~~~~~~~---t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l   81 (448)
T PRK12331          5 KITETVLRDGQQSLIATRMT---TEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQML   81 (448)
T ss_pred             EEEECCCCccccCcCCcccC---HHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEE
Confidence            34444444443332 33333   3444444555556799999994    442   1222456677777765 35666666


Q ss_pred             eccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc-chhHHHh-hcCCCCcEEE--EEcccCCCCCCHHHHHHHH
Q 011136           84 YRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR-EFNDSIR-GKKPEKCKVI--VSSHNYQYTPSVEDLSNLV  159 (493)
Q Consensus        84 ~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~-~~~~~l~-~~~~~~~kiI--~S~H~f~~tp~~~el~~~~  159 (493)
                      +|..+--|..+-+++...+.++.+++.|++.|-|=....+ +.+.+.+ .+++.+..+.  ++|-+ ..--+.+.+.+..
T Consensus        82 ~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~-~p~~~~~~~~~~a  160 (448)
T PRK12331         82 LRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTT-SPVHTIDYFVKLA  160 (448)
T ss_pred             eccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeec-CCCCCHHHHHHHH
Confidence            8876666766667777778899999999999888655432 1222222 2334455543  34432 2111556789999


Q ss_pred             HHHHHcCCCEEEEEeecC--CHhHHHHHHHHhcc-CCCCEEEE--ecCCcchhhhhhccccCCcccccccCCCcCCCCCC
Q 011136          160 ARIQASGADIVKFATTAL--DITDVARVFQITVH-SQVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQ  234 (493)
Q Consensus       160 ~~~~~~gaDIvKia~~a~--s~~D~~~l~~~~~~-~~~PlIa~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ  234 (493)
                      +++.+.|||.+-|+=|+-  +|.++.++.+.+++ .+.|+-.-  ++--+|..+-+..-.-|....=+++.. -+...||
T Consensus       161 ~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~g-lg~gaGN  239 (448)
T PRK12331        161 KEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISP-FAGGTSQ  239 (448)
T ss_pred             HHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccc-cCCCcCC
Confidence            999999999988886653  57888888877654 35665442  233344444444444454433344432 1234789


Q ss_pred             CCHHhHHHHhh
Q 011136          235 PTIKDLLDLYN  245 (493)
Q Consensus       235 ~~i~~l~~~~~  245 (493)
                      ++.+++...++
T Consensus       240 ~~tE~lv~~L~  250 (448)
T PRK12331        240 PATESMVAALQ  250 (448)
T ss_pred             HhHHHHHHHHH
Confidence            99988877665

>PRK07024 short chain dehydrogenase; Provisional

Probab=94.29  E-value=0.1  Score=51.08  Aligned_cols=45  Identities=24%  Similarity=0.301  Sum_probs=39.0

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~   47 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLP   47 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc
Confidence            468999985 889999999999999999999999988887776553

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=94.25  E-value=1.3  Score=44.78  Aligned_cols=140  Identities=20%  Similarity=0.268  Sum_probs=92.2

Q ss_pred             EEeecCCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHH
Q 011136          256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAK  330 (493)
Q Consensus       256 ~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~  330 (493)
                      .-++|+.-+....=.+-...+++.|+...+..++.    ++|.+.++.+ .++++.|.-|-.|.=.    ++|+-    +
T Consensus        35 vilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~----hld~~----~  106 (283)
T COG0190          35 VILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPK----HLDEQ----K  106 (283)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC----CCCHH----H
Confidence            34567554444444667888999999887776653    4677777777 6789999999998532    22210    1


Q ss_pred             HhcceeeEEEe----c-cCCeEE-E---E-eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHH
Q 011136          331 SIGAVNCIIRR----Q-SDGKLF-G---Y-NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYG  399 (493)
Q Consensus       331 ~igAvNti~~~----~-~~g~l~-G---~-NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~  399 (493)
                      .+.++.--.--    + .-|++. +   + -.--.|++.-|++.           +.+++||+++|+|.+. .||-++.-
T Consensus       107 il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~-----------~i~l~Gk~~vVVGrS~iVGkPla~l  175 (283)
T COG0190         107 LLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEY-----------GIDLRGKNVVVVGRSNIVGKPLALL  175 (283)
T ss_pred             HHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcCcHHHHHH
Confidence            11111111000    0 013433 2   0 12268888888763           2678999999999998 99999999


Q ss_pred             HHhCCCeEEEEeCCh
Q 011136          400 AKAKGARVVIANRTY  414 (493)
Q Consensus       400 L~~~g~~i~v~~R~~  414 (493)
                      |...++.|+|+...-
T Consensus       176 L~~~naTVtvcHs~T  190 (283)
T COG0190         176 LLNANATVTVCHSRT  190 (283)
T ss_pred             HHhCCCEEEEEcCCC
Confidence            999999999988643

>PRK08267 short chain dehydrogenase; Provisional

Probab=94.24  E-value=0.1  Score=51.04  Aligned_cols=44  Identities=25%  Similarity=0.223  Sum_probs=39.0

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      |++||.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   46 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG   46 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Confidence            57999987 789999999999999999999999998888877554

>PLN02494 adenosylhomocysteinase

Probab=94.23  E-value=0.12  Score=55.74  Aligned_cols=43  Identities=37%  Similarity=0.468  Sum_probs=38.4

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      ..+.|++++|+|.|..|+.++..+...|++|+++++++.++..
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~e  292 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQ  292 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHH
Confidence            4578999999999999999999999999999999999877543

>PRK08017 oxidoreductase; Provisional

Probab=94.20  E-value=0.099  Score=50.84  Aligned_cols=40  Identities=28%  Similarity=0.356  Sum_probs=35.7

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      |+++|.|+ ||.|++++..|++.|++|+++.|+.++.+.+.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~   43 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN   43 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH
Confidence            57999998 99999999999999999999999988876553

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.20  E-value=0.44  Score=48.20  Aligned_cols=141  Identities=20%  Similarity=0.321  Sum_probs=86.1

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhh--hhhhhcH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVK--CCDEVDT  327 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~--~~d~~~~  327 (493)
                      .-++| +|-+++.--.. ...++++|++.....++.    +++.+.++.+ .+++..|.-|-+|....+-.  .++.+++
T Consensus        35 ii~vg~d~as~~Yv~~k-~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p  113 (282)
T PRK14166         35 VILVGDNPASQTYVKSK-AKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIIS  113 (282)
T ss_pred             EEEeCCCHHHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence            44556 44444444333 446789999987666653    3577777776 56789999999997532211  1111211


Q ss_pred             HHHHhcceeeEEEeccCCeEE-EE-----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHH
Q 011136          328 VAKSIGAVNCIIRRQSDGKLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGA  400 (493)
Q Consensus       328 ~A~~igAvNti~~~~~~g~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L  400 (493)
                       .+.+-..+.+    +-|+++ |.     -.-..|++.-|+..           +.+++||+++|+|-+. .|+-++.-|
T Consensus       114 -~KDVDGl~~~----N~g~l~~g~~~~~~PcTp~avi~lL~~y-----------~i~l~Gk~vvVvGrS~iVGkPla~lL  177 (282)
T PRK14166        114 -SKDVDGFHPI----NVGYLNLGLESGFLPCTPLGVMKLLKAY-----------EIDLEGKDAVIIGASNIVGRPMATML  177 (282)
T ss_pred             -ccCcccCChh----hhHHHhcCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHH
Confidence             1111111111    012221 21     11256666666653           2678999999999988 999999999


Q ss_pred             HhCCCeEEEEeCC
Q 011136          401 KAKGARVVIANRT  413 (493)
Q Consensus       401 ~~~g~~i~v~~R~  413 (493)
                      .+.|+.|+++.+.
T Consensus       178 ~~~~atVt~chs~  190 (282)
T PRK14166        178 LNAGATVSVCHIK  190 (282)
T ss_pred             HHCCCEEEEeCCC
Confidence            9999999988764

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.19  E-value=0.1  Score=57.21  Aligned_cols=42  Identities=24%  Similarity=0.259  Sum_probs=37.6

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      -++|.|||+|-||+.++..|+..|++|++++|+.++.++..+
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~   46 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIA   46 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence            367999999999999999999999999999999998876533

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.17  E-value=0.11  Score=52.97  Aligned_cols=42  Identities=26%  Similarity=0.300  Sum_probs=38.3

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      ++|.|||+|-+|.+++..|+..|++|++++|+.++.+++.+.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~   46 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGV   46 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence            579999999999999999999999999999999888877654

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.17  E-value=0.1  Score=57.64  Aligned_cols=46  Identities=22%  Similarity=0.226  Sum_probs=41.2

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +||.++|.|+ |+.|++++..|++.|++|+++.|+.++++.+++.+.
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~  125 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVK  125 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhh
Confidence            5789999998 889999999999999999999999999988877554

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.15  E-value=0.23  Score=50.75  Aligned_cols=35  Identities=40%  Similarity=0.499  Sum_probs=32.3

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      +.++.|||+|-+|++++..|...|++|++++|+..
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            56899999999999999999999999999999853

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=94.15  E-value=0.12  Score=50.40  Aligned_cols=45  Identities=24%  Similarity=0.347  Sum_probs=38.9

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|+++|.|+ |+.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~   47 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEIN   47 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            578999998 679999999999999999999999888877776543

>PRK07904 short chain dehydrogenase; Provisional

Probab=94.12  E-value=0.12  Score=50.94  Aligned_cols=46  Identities=20%  Similarity=0.169  Sum_probs=38.7

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCC-CeEEEEeCChHH-HHHHHHHhhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKG-ARVVIANRTYGE-SLTFLRLMSW  426 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g-~~i~v~~R~~~~-a~~la~~~~~  426 (493)
                      +++++|.|+ ||.|++++..|++.| ++|+++.|+.++ .+++++++..
T Consensus         8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~   56 (253)
T PRK07904          8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKA   56 (253)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHh
Confidence            678999988 789999999999986 699999999886 7777766543

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.11  E-value=0.7  Score=46.81  Aligned_cols=122  Identities=24%  Similarity=0.340  Sum_probs=78.9

Q ss_pred             HHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec----
Q 011136          272 YNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ----  342 (493)
Q Consensus       272 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~----  342 (493)
                      -...++++|++.....++-    +++.+.++.+ .++...|.-|-.|.-..    +|+    -+.+.+++.-.--+    
T Consensus        52 k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~----i~~----~~i~~~I~p~KDVDGl~p  123 (284)
T PRK14170         52 KQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEH----ISE----EKVIDTISYDKDVDGFHP  123 (284)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCC----CCH----HHHHhccCcccCcccCCh
Confidence            3556889999887666654    3577777777 56789999999997532    221    12223333221110    


Q ss_pred             -cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeC
Q 011136          343 -SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR  412 (493)
Q Consensus       343 -~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R  412 (493)
                       +-|+++ |.    -.--.|++.-|+..           +.+++||+|+|+|-+. .|+-++.-|.+.|+.|+++..
T Consensus       124 ~N~g~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs  189 (284)
T PRK14170        124 VNVGNLFIGKDSFVPCTPAGIIELIKST-----------GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHS  189 (284)
T ss_pred             hhhhHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence             012221 11    11156677766642           2678999999999988 899999999999999988764

>PRK06182 short chain dehydrogenase; Validated

Probab=94.09  E-value=0.11  Score=51.27  Aligned_cols=41  Identities=34%  Similarity=0.323  Sum_probs=36.8

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      +++++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++.
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~   44 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA   44 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            678999997 88999999999999999999999988876664

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.08  E-value=0.6  Score=47.61  Aligned_cols=140  Identities=16%  Similarity=0.258  Sum_probs=85.4

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHH--hhhhhhhcH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDT  327 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~  327 (493)
                      .-++| +|-+++.- ..-...++++|++.....++-    +++.+.++.+ .+++..|.-|-+|....+  ...++.+++
T Consensus        36 iI~vg~d~as~~Yv-~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p  114 (297)
T PRK14167         36 TVLMSDDPASETYV-SMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDP  114 (297)
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCc
Confidence            34556 33333333 233567899999987766664    3677777777 567899999999975322  112222222


Q ss_pred             HHHHhcceeeEEEeccCCeEE-EEe----ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHH
Q 011136          328 VAKSIGAVNCIIRRQSDGKLF-GYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK  401 (493)
Q Consensus       328 ~A~~igAvNti~~~~~~g~l~-G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~  401 (493)
                      . +.+-..+..    +-|+++ |.+    .-..|++.-|+..           +.+++||+|+|+|.+. .|+-++.-|.
T Consensus       115 ~-KDVDGl~~~----n~g~l~~g~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~  178 (297)
T PRK14167        115 A-KDVDGFHPE----NVGRLVAGDARFKPCTPHGIQKLLAAA-----------GVDTEGADVVVVGRSDIVGKPMANLLI  178 (297)
T ss_pred             c-cCcccCChh----hhHHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCcccHHHHHHHHh
Confidence            1 111122111    012221 211    2256777776652           2678999999999988 8999999988


Q ss_pred             hC----CCeEEEEeC
Q 011136          402 AK----GARVVIANR  412 (493)
Q Consensus       402 ~~----g~~i~v~~R  412 (493)
                      +.    ++.|+++..
T Consensus       179 ~~~~~~~aTVtvchs  193 (297)
T PRK14167        179 QKADGGNATVTVCHS  193 (297)
T ss_pred             cCccCCCCEEEEeCC
Confidence            77    678888754

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=94.08  E-value=0.12  Score=50.65  Aligned_cols=43  Identities=30%  Similarity=0.319  Sum_probs=38.0

Q ss_pred             EEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       383 ~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~   45 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELK   45 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence            6899987 779999999999999999999999988888777654

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=94.07  E-value=2  Score=43.59  Aligned_cols=122  Identities=15%  Similarity=0.227  Sum_probs=78.3

Q ss_pred             HHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc------------------ccchhHHHh
Q 011136           69 IKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQV------------------AREFNDSIR  130 (493)
Q Consensus        69 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~------------------~~~~~~~l~  130 (493)
                      ++.+.+...+|+++...+    |   ++.....+..+..++.|+..|-||-..                  .++..+.+.
T Consensus        70 ~~~I~~a~~~Pv~~D~d~----G---g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~  142 (285)
T TIGR02320        70 VEFMFDVTTKPIILDGDT----G---GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIR  142 (285)
T ss_pred             HHHHHhhcCCCEEEecCC----C---CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHH
Confidence            444556678999998854    4   356667778888899999999997642                  122233343


Q ss_pred             h---cCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhcc--CCCCEE
Q 011136          131 G---KKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH--SQVPII  197 (493)
Q Consensus       131 ~---~~~~~~kiI~S~H~-f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~~D~~~l~~~~~~--~~~PlI  197 (493)
                      +   ++.+.--+|...-| +-..-..++.+++.+...+.|||++=+-....+.++..++.+-.+.  .+.|++
T Consensus       143 Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~  215 (285)
T TIGR02320       143 AGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV  215 (285)
T ss_pred             HHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE
Confidence            2   22222123434333 2222247788888999999999998776556888888777765542  245774

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=94.04  E-value=0.14  Score=49.34  Aligned_cols=46  Identities=28%  Similarity=0.364  Sum_probs=40.1

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++++++|.|+ |+.|++++..|.+.|+.|.+..|+.++.+++.+.+
T Consensus         4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~   50 (245)
T PRK12936          4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL   50 (245)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence            45789999996 88999999999999999999999998888877654

>PRK06940 short chain dehydrogenase; Provisional

Probab=94.04  E-value=0.12  Score=51.49  Aligned_cols=44  Identities=30%  Similarity=0.452  Sum_probs=38.1

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|.++|-|+||.|++++..|. .|++|++++|+.++.+++.+.+.
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~   45 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLR   45 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHH
Confidence            467899999999999999996 79999999999888877776654

>PRK07102 short chain dehydrogenase; Provisional

Probab=94.04  E-value=0.13  Score=49.77  Aligned_cols=44  Identities=27%  Similarity=0.299  Sum_probs=38.6

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      |+++|.|+ ||.|++++..|.+.|++|++++|+.++.+.+.+.+.
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~   46 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLR   46 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHH
Confidence            57999996 889999999999999999999999988887776543

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.01  E-value=0.19  Score=52.61  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=32.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESL  418 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~  418 (493)
                      +++.|||.|-+|.+++.+|.+.|.++.+++|+.++.+
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~   37 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQ   37 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHH
Confidence            3689999999999999999999998888998876643

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.99  E-value=0.45  Score=48.39  Aligned_cols=44  Identities=27%  Similarity=0.219  Sum_probs=37.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++.|+|+|-+|..+++.++..|. +|++++++.++++..+.++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~   47 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIA   47 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHH
Confidence            579999999999999999998876 99999999988776655443

>PRK06180 short chain dehydrogenase; Provisional

Probab=93.98  E-value=0.12  Score=51.30  Aligned_cols=43  Identities=37%  Similarity=0.453  Sum_probs=38.2

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      +++++|.|+ ||.|++++..|++.|++|+++.|+.++.+.+.+.
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~   47 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL   47 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh
Confidence            578999998 8899999999999999999999999888777654

>PRK06841 short chain dehydrogenase; Provisional

Probab=93.98  E-value=0.13  Score=49.94  Aligned_cols=40  Identities=43%  Similarity=0.567  Sum_probs=35.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      ++++|+++|.|+ ||.|++++..|++.|++|++++|+.+..
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~   52 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA   52 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            467899999997 8899999999999999999999987653

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=93.93  E-value=0.14  Score=51.92  Aligned_cols=38  Identities=29%  Similarity=0.279  Sum_probs=35.2

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      ++|.|||+|-||.+++..|+..|++|++++++.++.+.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   42 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSR   42 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence            67999999999999999999999999999999988764

>PRK09291 short chain dehydrogenase; Provisional

Probab=93.92  E-value=0.15  Score=49.69  Aligned_cols=45  Identities=20%  Similarity=0.289  Sum_probs=38.6

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++++||.|+ ||.|++++..|++.|++|+++.|+.++.+++.+...
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~   47 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAA   47 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            468999998 789999999999999999999999888877765443

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=93.92  E-value=0.32  Score=48.27  Aligned_cols=103  Identities=23%  Similarity=0.105  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEE--------EeCChHHHHHHHHHhh
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVI--------ANRTYGESLTFLRLMS  425 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v--------~~R~~~~a~~la~~~~  425 (493)
                      +.|...+++..+...+      ..++++++++|-|.|.+|..++..|.+.|++|+.        +|.+--..++|.+...
T Consensus        11 g~GV~~~~~~~~~~~~------~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~   84 (244)
T PF00208_consen   11 GYGVAYAIEAALEHLG------GDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKE   84 (244)
T ss_dssp             HHHHHHHHHHHHHHTT------CHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHH
Confidence            5677777766554211      1358899999999999999999999999986544        3555445555554322


Q ss_pred             hhh--hcccc---cceEEEEeecccccCCceEEEEeccccCCc
Q 011136          426 WLL--LNTLL---FDSVIVIRILLFTWHLKFFIAANIIHLGNH  463 (493)
Q Consensus       426 ~~~--~~~~~---~~~~~v~~~l~~~~~~~~~i~~n~tplG~~  463 (493)
                      ...  +....   .+....+++-++-|..+.+|++|| .++..
T Consensus        85 ~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~  126 (244)
T PF00208_consen   85 ERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNV  126 (244)
T ss_dssp             HHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTS
T ss_pred             HhCCcccccccccccceeEeccccccccccccEEEEc-CCCCe
Confidence            111  11111   112334443334566788999988 55444

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.91  E-value=0.52  Score=48.04  Aligned_cols=140  Identities=22%  Similarity=0.264  Sum_probs=84.4

Q ss_pred             EEeecC-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHH--hhhhhhhcH
Q 011136          256 FGIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDT  327 (493)
Q Consensus       256 ~~viG~-pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~  327 (493)
                      .-++|+ |-+++.- ..--.+++++|++..-..++.    +++.+.++.+ .+++..|.-|-.|.-..+  ...++.+++
T Consensus        37 iI~vgdd~as~~Yv-~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p  115 (297)
T PRK14186         37 VLRVGDDPASAVYV-RNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDP  115 (297)
T ss_pred             EEEeCCChHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence            345563 3333322 233556889999887555542    3677777777 567899999999974322  112222221


Q ss_pred             HHHHhcceeeEEEeccCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHH
Q 011136          328 VAKSIGAVNCIIRRQSDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK  401 (493)
Q Consensus       328 ~A~~igAvNti~~~~~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~  401 (493)
                      . +.+-..+..-    -|++. |.    -.-..|++.-|+..           +.+++||+|+|||-+. .|+-++.-|.
T Consensus       116 ~-KDVDGl~~~n----~g~l~~~~~~~~PcTp~aii~lL~~~-----------~i~l~Gk~vvVIGrS~iVGkPla~lL~  179 (297)
T PRK14186        116 D-KDADGLHPLN----LGRLVKGEPGLRSCTPAGVMRLLRSQ-----------QIDIAGKKAVVVGRSILVGKPLALMLL  179 (297)
T ss_pred             c-cCcccCChhh----HHHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHH
Confidence            1 1111111110    01111 11    12256777776652           2678999999999988 9999999999


Q ss_pred             hCCCeEEEEeC
Q 011136          402 AKGARVVIANR  412 (493)
Q Consensus       402 ~~g~~i~v~~R  412 (493)
                      +.|+.|+++..
T Consensus       180 ~~~atVtv~hs  190 (297)
T PRK14186        180 AANATVTIAHS  190 (297)
T ss_pred             HCCCEEEEeCC
Confidence            99999998854

>PRK05884 short chain dehydrogenase; Provisional

Probab=93.91  E-value=0.13  Score=49.55  Aligned_cols=42  Identities=17%  Similarity=0.288  Sum_probs=37.4

Q ss_pred             EEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       383 ~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++|.|+ ||.|++++..|.+.|++|++++|+.++.+++++.+
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~   44 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL   44 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc
Confidence            5889987 88999999999999999999999999888877654

>PRK07806 short chain dehydrogenase; Provisional

Probab=93.88  E-value=0.15  Score=49.49  Aligned_cols=46  Identities=28%  Similarity=0.327  Sum_probs=37.3

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY-GESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~-~~a~~la~~~  424 (493)
                      +.+++++|.|+ ||.|++++..|.+.|++|+++.|+. ++.+.+++.+
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l   51 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEI   51 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHH
Confidence            45789999997 8899999999999999999989975 3455555444

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.86  E-value=0.21  Score=53.07  Aligned_cols=40  Identities=23%  Similarity=0.132  Sum_probs=37.3

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++.|||.|-+|..++..|++.|++|++++|+.++.+.|.+
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~   41 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNK   41 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhc
Confidence            5889999999999999999999999999999999988764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=93.86  E-value=0.15  Score=52.10  Aligned_cols=45  Identities=22%  Similarity=0.288  Sum_probs=40.0

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKG-ARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g-~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|.++|.|+ +|.|++++..|++.| ++|+++.|+.++.+++++.+.
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~   49 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLG   49 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc
Confidence            578999998 789999999999999 799999999999888877654

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PLN02477 glutamate dehydrogenase

Probab=93.86  E-value=0.38  Score=51.25  Aligned_cols=53  Identities=30%  Similarity=0.397  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEE-EEeCC
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANRT  413 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~-v~~R~  413 (493)
                      +.|...+++..+..       .+.+++|++++|.|.|.+|+.++..|.+.|++|+ |.+.+
T Consensus       186 g~Gv~~~~~~~~~~-------~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~  239 (410)
T PLN02477        186 GRGVVFATEALLAE-------HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT  239 (410)
T ss_pred             hHHHHHHHHHHHHH-------cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence            77887777765542       1257889999999999999999999999999776 77776

>PRK06181 short chain dehydrogenase; Provisional

Probab=93.86  E-value=0.15  Score=49.90  Aligned_cols=44  Identities=30%  Similarity=0.471  Sum_probs=38.6

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~   46 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELA   46 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            57999998 889999999999999999999999888887766554

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.82  E-value=0.33  Score=51.82  Aligned_cols=40  Identities=20%  Similarity=0.125  Sum_probs=37.3

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      +++.|||.|-+|..++..|++.|++|+.++|+.++.+.+.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~   43 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN   43 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence            5799999999999999999999999999999999988764

>PRK06114 short chain dehydrogenase; Provisional

Probab=93.82  E-value=0.17  Score=49.53  Aligned_cols=48  Identities=25%  Similarity=0.347  Sum_probs=39.0

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG-ESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~-~a~~la~~~~  425 (493)
                      .+++|.++|.|+ ||.|++++..|++.|++|++..|+.+ ..+++.+.+.
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~   54 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIE   54 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHH
Confidence            467899999987 68999999999999999999998754 4466655554

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=93.79  E-value=0.15  Score=49.44  Aligned_cols=36  Identities=42%  Similarity=0.607  Sum_probs=32.9

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      +++|+++|.|+ ||.|++++..|.+.|++|++++|+.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~   39 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE   39 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence            56899999998 7899999999999999999999975

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07791 short chain dehydrogenase; Provisional

Probab=93.77  E-value=0.15  Score=51.14  Aligned_cols=47  Identities=34%  Similarity=0.550  Sum_probs=39.3

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh---------HHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY---------GESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~---------~~a~~la~~~~  425 (493)
                      +++|.++|.|+ +|.|++++..|++.|++|+++.|+.         ++.+++++.+.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~   60 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIV   60 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHH
Confidence            46889999988 7899999999999999999988876         66777766654

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.77  E-value=0.77  Score=46.55  Aligned_cols=123  Identities=17%  Similarity=0.270  Sum_probs=79.3

Q ss_pred             HHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec----
Q 011136          272 YNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ----  342 (493)
Q Consensus       272 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~----  342 (493)
                      --..++++|++.....++-    +++.+.++.+ .+++..|+-|-+|...    ++|+    -+.+.+++.-.--+    
T Consensus        53 k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~----~id~----~~i~~~I~p~KDVDGl~~  124 (284)
T PRK14193         53 KHRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPK----HLDE----NAVLERIDPAKDADGLHP  124 (284)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH----HHHHhcCCcccCccCCCh
Confidence            3567889999987666653    3577777777 5678999999999752    2221    12233333322110    


Q ss_pred             -cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHh--CCCeEEEEeCC
Q 011136          343 -SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKA--KGARVVIANRT  413 (493)
Q Consensus       343 -~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~--~g~~i~v~~R~  413 (493)
                       .-|+++ |.    -.-..|++.-|+..           +.+++||+++|+|.+. .|+-++.-|..  .++.|+++...
T Consensus       125 ~n~g~l~~~~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~  193 (284)
T PRK14193        125 TNLGRLVLNEPAPLPCTPRGIVHLLRRY-----------DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG  193 (284)
T ss_pred             hhhhHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC
Confidence             012221 11    12256677776642           2678999999999988 89999999987  67899998753

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.76  E-value=0.14  Score=49.98  Aligned_cols=86  Identities=15%  Similarity=0.102  Sum_probs=54.5

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHhhhhhhcccccceEEEE-eecccccCCceEEE
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG-ESLTFLRLMSWLLLNTLLFDSVIVI-RILLFTWHLKFFIA  454 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~-~a~~la~~~~~~~~~~~~~~~~~v~-~~l~~~~~~~~~i~  454 (493)
                      ..+++++|||+|+|.+|..=+..|.+.|++|+|++-+.. ..+.+++.-           .++.. ++.+..|-.++.++
T Consensus        21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~-----------~i~~~~r~~~~~dl~g~~LV   89 (223)
T PRK05562         21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYG-----------NLKLIKGNYDKEFIKDKHLI   89 (223)
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCC-----------CEEEEeCCCChHHhCCCcEE
Confidence            456789999999999998888899999999999988653 223333311           11111 22222333556677


Q ss_pred             EeccccCCchhhHhhhhhHHHHhhccc
Q 011136          455 ANIIHLGNHLEWVTAAFNLFFYLTCNS  481 (493)
Q Consensus       455 ~n~tplG~~~~~~~~~~~~~~~~~~~~  481 (493)
                      +-||.        -...|..++..|+.
T Consensus        90 iaATd--------D~~vN~~I~~~a~~  108 (223)
T PRK05562         90 VIATD--------DEKLNNKIRKHCDR  108 (223)
T ss_pred             EECCC--------CHHHHHHHHHHHHH
Confidence            76664        22456666666654

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.75  E-value=0.14  Score=50.51  Aligned_cols=46  Identities=24%  Similarity=0.266  Sum_probs=37.7

Q ss_pred             cCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCCh--HHHHHHHHHh
Q 011136          379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY--GESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~--~~a~~la~~~  424 (493)
                      +++|.++|.|+   +|.|++++..|++.|++|++++|+.  +..+++++.+
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~   55 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL   55 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc
Confidence            56899999996   7999999999999999999998764  4456665554

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=93.71  E-value=0.81  Score=46.08  Aligned_cols=89  Identities=21%  Similarity=0.300  Sum_probs=64.9

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC-----CC--Cc---hhHHHHHHhhCCCcEEEEeccCCCCC
Q 011136           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLK-----NF--NP---RENIKTLIKESPVPTLFTYRPIWEGG   91 (493)
Q Consensus        22 ~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-----~~--~~---~~~l~~l~~~~~~PiI~T~R~~~eGG   91 (493)
                      +.| +.++|.+++.++..+.++.+.+.|+|+||+-+..-.     .+  ++   .+.++.+++..++|+++-++..    
T Consensus        98 ~~p-vi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----  172 (289)
T cd02810          98 GQP-LIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY----  172 (289)
T ss_pred             CCe-EEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----
Confidence            345 557899999999999998888889999999765321     00  11   2345556666689999888852    


Q ss_pred             CCCCCHHHHHHHHHHHHHhCCcEEEEE
Q 011136           92 QYDGDENERVDVLRLAMELGADYIDVE  118 (493)
Q Consensus        92 ~~~~~~~~~~~ll~~~l~~~~dyIDIE  118 (493)
                         .+.++..++.+.+.+.|+|+|.+-
T Consensus       173 ---~~~~~~~~~a~~l~~~Gad~i~~~  196 (289)
T cd02810         173 ---FDLEDIVELAKAAERAGADGLTAI  196 (289)
T ss_pred             ---CCHHHHHHHHHHHHHcCCCEEEEE
Confidence               245567788888889999999885

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=93.71  E-value=4.8  Score=36.81  Aligned_cols=124  Identities=18%  Similarity=0.103  Sum_probs=74.1

Q ss_pred             HHHHHHHHhhhhcCCCEEEEEecCCCCCCc--h--hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 011136           36 DKMVVDMGKANASGADLVEIRLDGLKNFNP--R--ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (493)
Q Consensus        36 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~--~--~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~  111 (493)
                      +...+.++.+.+.|+|+++++.........  .  +.+..+++..+.|+++.......+       +......+.+.+.|
T Consensus        12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~g   84 (200)
T cd04722          12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA-------AAVDIAAAAARAAG   84 (200)
T ss_pred             HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCch-------hhhhHHHHHHHHcC
Confidence            566666777767799999999865443221  1  135556666789999887642211       11111134666778


Q ss_pred             CcEEEEEcccc------cchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEee
Q 011136          112 ADYIDVELQVA------REFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT  175 (493)
Q Consensus       112 ~dyIDIEl~~~------~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~  175 (493)
                      +|+|.+-....      .+.++.+...- ++..++...|......   +.     .+.+.|+|++.+...
T Consensus        85 ~d~v~l~~~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~---~~-----~~~~~g~d~i~~~~~  145 (200)
T cd04722          85 ADGVEIHGAVGYLAREDLELIRELREAV-PDVKVVVKLSPTGELA---AA-----AAEEAGVDEVGLGNG  145 (200)
T ss_pred             CCEEEEeccCCcHHHHHHHHHHHHHHhc-CCceEEEEECCCCccc---hh-----hHHHcCCCEEEEcCC
Confidence            99998876663      33444554321 3678888887532111   11     156779999887654

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.71  E-value=0.16  Score=50.09  Aligned_cols=37  Identities=27%  Similarity=0.259  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          378 ALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       378 ~l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .+++|.++|.|++   |.|++++..|++.|++|++..|+.
T Consensus         5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~   44 (260)
T PRK06603          5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE   44 (260)
T ss_pred             ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch
Confidence            3568999999996   799999999999999999988874

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=93.71  E-value=0.13  Score=52.21  Aligned_cols=46  Identities=20%  Similarity=0.246  Sum_probs=36.6

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLL  428 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~  428 (493)
                      +|+|+|+||.|..++..|+..|+ +|+|++-+                   ..||+.+++.+...+
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~n   66 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRV   66 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHC
Confidence            48999999999999999999999 99986621                   246776776666554

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=93.70  E-value=0.18  Score=49.52  Aligned_cols=48  Identities=31%  Similarity=0.428  Sum_probs=38.1

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-YGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~-~~~a~~la~~~~  425 (493)
                      ++++|+++|.|+ ||.|++++..|.+.|+++++..|+ .++.+.+.+.+.
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~   53 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIK   53 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            467899999997 679999999999999988888884 455555655543

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=93.67  E-value=0.29  Score=51.50  Aligned_cols=78  Identities=13%  Similarity=0.061  Sum_probs=53.2

Q ss_pred             CCEEEEEe-cchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          381 GKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       381 ~~~vlvlG-aGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      .+++.||| .|.+|.+++.+|.+.|++|++++|+...  ...+                       .. .+.++++-+||
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~~~~-----------------------~~-~~aDlVilavP  151 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--RAED-----------------------IL-ADAGMVIVSVP  151 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--hHHH-----------------------HH-hcCCEEEEeCc
Confidence            47899999 8999999999999999999999996320  0000                       00 23456776777


Q ss_pred             cCCchhhHhhhhhHHHHhhccceEeeeccc
Q 011136          460 LGNHLEWVTAAFNLFFYLTCNSYVVMEKTE  489 (493)
Q Consensus       460 lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (493)
                      .....+.+.     .......+.+|+|-|-
T Consensus       152 ~~~~~~~~~-----~l~~l~~~~iv~Dv~S  176 (374)
T PRK11199        152 IHLTEEVIA-----RLPPLPEDCILVDLTS  176 (374)
T ss_pred             HHHHHHHHH-----HHhCCCCCcEEEECCC
Confidence            665544442     2333456889999764

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=93.66  E-value=0.14  Score=52.40  Aligned_cols=48  Identities=25%  Similarity=0.281  Sum_probs=41.3

Q ss_pred             cccCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++||.+||-|+   .|.|++++..|++.|++|++ .|+.++.++++....
T Consensus         5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~   55 (303)
T PLN02730          5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLR   55 (303)
T ss_pred             cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhh
Confidence            4588999999999   99999999999999999988 788888777765443

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=93.65  E-value=0.17  Score=54.25  Aligned_cols=83  Identities=13%  Similarity=-0.051  Sum_probs=55.8

Q ss_pred             EEEEEecchHHHHHHH--HHH----hCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          383 LFVVIGAGGAGKALAY--GAK----AKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       383 ~vlvlGaGGaara~~~--~L~----~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ++.|||+|.+|.+.+.  .++    ..|.+|.++++++++++.................++.+-.++.+.. .+.+++++
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal-~~AD~Vi~   80 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREAL-DGADFVIN   80 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHh-cCCCEEEE
Confidence            6899999998887555  454    2345999999999999888776543321111123555555555555 67889999


Q ss_pred             ccccCCchhh
Q 011136          457 IIHLGNHLEW  466 (493)
Q Consensus       457 ~tplG~~~~~  466 (493)
                      ++|.|-.+..
T Consensus        81 ai~~~~~~~~   90 (423)
T cd05297          81 TIQVGGHEYT   90 (423)
T ss_pred             eeEecCccch
Confidence            9998766443

linked to 3D####ucture

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=93.61  E-value=0.17  Score=49.41  Aligned_cols=46  Identities=39%  Similarity=0.549  Sum_probs=37.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+. ..+++.+.+
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~   51 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE-LVHEVAAEL   51 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch-HHHHHHHHH
Confidence            467899999998 7799999999999999999999985 344555444

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=93.59  E-value=0.17  Score=49.24  Aligned_cols=42  Identities=19%  Similarity=0.323  Sum_probs=37.3

Q ss_pred             EEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       383 ~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++|.|+ ||.|++++..|.+.|++|++++|+.++++.+.+.+
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   44 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL   44 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence            6899997 88999999999999999999999999888876654

>PRK06198 short chain dehydrogenase; Provisional

Probab=93.56  E-value=0.16  Score=49.57  Aligned_cols=46  Identities=30%  Similarity=0.416  Sum_probs=39.5

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGAR-VVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~-i~v~~R~~~~a~~la~~~  424 (493)
                      +++|+++|.|+ ||.|+.++..|.+.|++ |++++|+.++.+.+.+.+
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l   51 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAEL   51 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHH
Confidence            56889999998 78999999999999996 999999988777666554

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=93.56  E-value=0.38  Score=47.91  Aligned_cols=75  Identities=16%  Similarity=0.053  Sum_probs=53.4

Q ss_pred             EEEEec-chHHHHHHHHHHhCC----CeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          384 FVVIGA-GGAGKALAYGAKAKG----ARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       384 vlvlGa-GGaara~~~~L~~~g----~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      +.|+|+ |.+|..+++.|+..|    .+|++++++.++++..+.++....... ..-+++.-.++++.. .+.++++.+.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~-~~aDiVv~t~   78 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAF-KDADVVIITA   78 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHh-CCCCEEEECC
Confidence            469999 779999999999888    389999999999888888766544222 122555444434444 6677777765


Q ss_pred             cc
Q 011136          459 HL  460 (493)
Q Consensus       459 pl  460 (493)
                      ..
T Consensus        79 ~~   80 (263)
T cd00650          79 GV   80 (263)
T ss_pred             CC
Confidence            54

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=93.55  E-value=0.17  Score=49.01  Aligned_cols=45  Identities=31%  Similarity=0.405  Sum_probs=39.0

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|++||.|+ |+.|++++..|.+.|++|+++.|+.++.+++.+.+.
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   46 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVAT   46 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            367999996 789999999999999999999999988888776553

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK07832 short chain dehydrogenase; Provisional

Probab=93.54  E-value=0.17  Score=50.01  Aligned_cols=44  Identities=27%  Similarity=0.319  Sum_probs=37.7

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~   45 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADAR   45 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            46899987 789999999999999999999999888777766554

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=93.53  E-value=0.42  Score=49.16  Aligned_cols=33  Identities=33%  Similarity=0.398  Sum_probs=30.6

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .++.|||+|.+|.+++..|.+.|++|++++|+.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            369999999999999999999999999999975

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.53  E-value=1.3  Score=44.99  Aligned_cols=122  Identities=20%  Similarity=0.314  Sum_probs=77.3

Q ss_pred             HHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec----
Q 011136          272 YNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ----  342 (493)
Q Consensus       272 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~----  342 (493)
                      -...++++|++.....++-    +++.+.++.+ .++...|+-|-.|....    +|+    -+.+.+++.-.--+    
T Consensus        52 k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~----i~~----~~i~~~I~p~KDVDGl~~  123 (293)
T PRK14185         52 KVKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKH----ISE----QKVIEAIDYRKDVDGFHP  123 (293)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCC----CCH----HHHHhccCcccCcCCCCH
Confidence            3567899999987655553    3577777777 56789999999997532    221    11222222221110    


Q ss_pred             -cCCeEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhC----CCeEEEEe
Q 011136          343 -SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAK----GARVVIAN  411 (493)
Q Consensus       343 -~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~----g~~i~v~~  411 (493)
                       +-|+++ |.    -.-..|++.-|+..           +.+++||+|+|||-+. .|+-++.-|.+.    ++.|+++.
T Consensus       124 ~N~g~l~~~~~~~~PcTp~av~~lL~~~-----------~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvch  192 (293)
T PRK14185        124 INVGRMSIGLPCFVSATPNGILELLKRY-----------HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCH  192 (293)
T ss_pred             hhHHHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEec
Confidence             012222 11    11256667766653           2678999999999988 999999999887    57899885


Q ss_pred             C
Q 011136          412 R  412 (493)
Q Consensus       412 R  412 (493)
                      .
T Consensus       193 s  193 (293)
T PRK14185        193 S  193 (293)
T ss_pred             C
Confidence            4

>PRK06398 aldose dehydrogenase; Validated

Probab=93.50  E-value=0.11  Score=51.07  Aligned_cols=39  Identities=28%  Similarity=0.384  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      ++++|++||.|+ ||.|++++..|.+.|++|++++|+.++
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~   42 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS   42 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc
Confidence            356899999997 789999999999999999999998654

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=93.49  E-value=2.8  Score=40.47  Aligned_cols=119  Identities=18%  Similarity=0.184  Sum_probs=69.3

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 011136           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGAD  113 (493)
Q Consensus        34 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~d  113 (493)
                      +..+...-.+.+.+.|+.++|+  +.      .+.++.+++...+|++.-+|..-++...-.+  .+.+.++.+.+.|++
T Consensus        25 ~~~~i~~~a~~~~~~G~~~~~~--~~------~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig--~~~~~~~~a~~aGad   94 (219)
T cd04729          25 SPEIMAAMALAAVQGGAVGIRA--NG------VEDIRAIRARVDLPIIGLIKRDYPDSEVYIT--PTIEEVDALAAAGAD   94 (219)
T ss_pred             cHHHHHHHHHHHHHCCCeEEEc--CC------HHHHHHHHHhCCCCEEEEEecCCCCCCceeC--CCHHHHHHHHHcCCC
Confidence            4445566666677789999885  22      2456667666789998766543222111111  134566888889999


Q ss_pred             EEEEEccc---cc-chhHHHh-hcCCC-CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          114 YIDVELQV---AR-EFNDSIR-GKKPE-KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       114 yIDIEl~~---~~-~~~~~l~-~~~~~-~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      +|=++...   ++ +....+. ..++. ...+++..|    |+  ++    ..++.+.|+|++++
T Consensus        95 ~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~----t~--~e----a~~a~~~G~d~i~~  149 (219)
T cd04729          95 IIALDATDRPRPDGETLAELIKRIHEEYNCLLMADIS----TL--EE----ALNAAKLGFDIIGT  149 (219)
T ss_pred             EEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECC----CH--HH----HHHHHHcCCCEEEc
Confidence            98776543   22 1222333 22222 367777655    22  23    36677789999875

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.48  E-value=0.42  Score=48.93  Aligned_cols=45  Identities=18%  Similarity=0.223  Sum_probs=38.7

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      ++.|||+|.+|.++++.|+..|.  +|.+++|+.++++..+.++...
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~   48 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG   48 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc
Confidence            58999999999999999999994  8999999999888766655543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=93.45  E-value=0.46  Score=46.57  Aligned_cols=145  Identities=19%  Similarity=0.144  Sum_probs=86.2

Q ss_pred             CCCCcEEEEeecCC----CHHHH-----HHHHHhhhhcCCCEEEEEecC---CCCCCc--hhHHHHHHh---hCCCcEEE
Q 011136           20 RKNPTLICVPIMGE----SVDKM-----VVDMGKANASGADLVEIRLDG---LKNFNP--RENIKTLIK---ESPVPTLF   82 (493)
Q Consensus        20 ~~~~~~Icv~l~~~----~~~e~-----~~~~~~~~~~~aD~vElRlD~---l~~~~~--~~~l~~l~~---~~~~PiI~   82 (493)
                      ....+.+|+.+..+    +.+.-     ..+++++.+.|||.|.+-+++   ..+...  .+.++.+.+   ...+|+|+
T Consensus        51 ~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIl  130 (236)
T PF01791_consen   51 AGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVIL  130 (236)
T ss_dssp             TTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred             hccccccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEE
Confidence            33344677666554    56666     788999999999999999987   322111  233444443   34788887


Q ss_pred             EeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcc-------cccchhHHHhhc--CCCCcEEEEEcccCCCCCCHH
Q 011136           83 TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQ-------VAREFNDSIRGK--KPEKCKVIVSSHNYQYTPSVE  153 (493)
Q Consensus        83 T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~-------~~~~~~~~l~~~--~~~~~kiI~S~H~f~~tp~~~  153 (493)
                      -.-...+.-.-...++.-....+.+.++|+|+|-.+..       .+.+.+.++...  .+++++|++|     +-++.+
T Consensus       131 E~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~s-----GGi~~~  205 (236)
T PF01791_consen  131 EPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKAS-----GGIDAE  205 (236)
T ss_dssp             EECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEE-----SSSSHH
T ss_pred             EEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEe-----CCCChH
Confidence            64432221110112233455677788899999999877       344455555531  2367888887     344566


Q ss_pred             HHHHHHHHHH---HcCCCE
Q 011136          154 DLSNLVARIQ---ASGADI  169 (493)
Q Consensus       154 el~~~~~~~~---~~gaDI  169 (493)
                      +....++.+.   +.|||.
T Consensus       206 ~~~~~l~~a~~~i~aGa~~  224 (236)
T PF01791_consen  206 DFLRTLEDALEFIEAGADR  224 (236)
T ss_dssp             HHHHSHHHHHHHHHTTHSE
T ss_pred             HHHHHHHHHHHHHHcCChh
Confidence            6666666655   888876

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PRK08223 hypothetical protein; Validated

Probab=93.43  E-value=0.092  Score=53.24  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=31.1

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R  412 (493)
                      +++++|+|+|+||.|..++.+|+..|+ +|++++.
T Consensus        25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~   59 (287)
T PRK08223         25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF   59 (287)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence            567899999999999999999999999 9998764

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.36  E-value=0.086  Score=47.37  Aligned_cols=31  Identities=19%  Similarity=0.492  Sum_probs=28.4

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC-eEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~  413 (493)
                      +|+|+|+||.|..++..|...|+ ++++++.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            48999999999999999999999 99998754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=93.35  E-value=0.42  Score=46.26  Aligned_cols=93  Identities=19%  Similarity=0.362  Sum_probs=62.5

Q ss_pred             cCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC---------CCCC---Cc---hhHHHHHHhhCCCcEEE
Q 011136           18 GMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDG---------LKNF---NP---RENIKTLIKESPVPTLF   82 (493)
Q Consensus        18 ~~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~---------l~~~---~~---~~~l~~l~~~~~~PiI~   82 (493)
                      .-..+.|.+ ++|.+.+.+++.+.++.+.+.|+|.|||-+-.         +...   ++   .+.++.+++....|+.+
T Consensus        50 ~~~~~~p~~-~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~v  128 (231)
T cd02801          50 RNPEERPLI-VQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTV  128 (231)
T ss_pred             cCccCCCEE-EEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEE
Confidence            345555555 79999999999999999878899999997643         1110   11   23455666555678777


Q ss_pred             EeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 011136           83 TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV  117 (493)
Q Consensus        83 T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDI  117 (493)
                      -+|...     ... ++-.++.+...+.|+++|.|
T Consensus       129 k~r~~~-----~~~-~~~~~~~~~l~~~Gvd~i~v  157 (231)
T cd02801         129 KIRLGW-----DDE-EETLELAKALEDAGASALTV  157 (231)
T ss_pred             EEeecc-----CCc-hHHHHHHHHHHHhCCCEEEE
Confidence            777421     111 35666777777789999977

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK05599 hypothetical protein; Provisional

Probab=93.34  E-value=0.18  Score=49.22  Aligned_cols=44  Identities=16%  Similarity=0.146  Sum_probs=38.0

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      +.++|.|+ +|.|++++..|++ |.+|++++|+.++++++++.+..
T Consensus         1 ~~vlItGas~GIG~aia~~l~~-g~~Vil~~r~~~~~~~~~~~l~~   45 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLCH-GEDVVLAARRPEAAQGLASDLRQ   45 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHh
Confidence            35889988 7799999999984 89999999999999999887754

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=93.31  E-value=0.13  Score=40.45  Aligned_cols=29  Identities=38%  Similarity=0.500  Sum_probs=26.4

Q ss_pred             EEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          386 VIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       386 vlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      |||+|-+|.++++.|++.|++|+|+.|..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence            79999999999999999999999999875

...

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=93.30  E-value=2.3  Score=40.26  Aligned_cols=109  Identities=17%  Similarity=0.210  Sum_probs=66.1

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC---CCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDG---LKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER  100 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~---l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~  100 (493)
                      +|..+|..-|..++..+++.+.+.|+|++++|+=-   .+.... .+.++.+++..+.|+.+++-..        +... 
T Consensus         1 ~~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~--------d~~~-   71 (211)
T cd00429           1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVE--------NPER-   71 (211)
T ss_pred             CceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeC--------CHHH-
Confidence            35678888999999999999988999999998622   121111 2456666654456765555432        1122 


Q ss_pred             HHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcc
Q 011136          101 VDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSH  144 (493)
Q Consensus       101 ~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H  144 (493)
                        .++.+.+.|+|+|-|=....+...+.+...++.+.+++++.|
T Consensus        72 --~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~  113 (211)
T cd00429          72 --YIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALN  113 (211)
T ss_pred             --HHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEec
Confidence              355666888998755222222222222222345778888876

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK08264 short chain dehydrogenase; Validated

Probab=93.30  E-value=0.15  Score=49.07  Aligned_cols=41  Identities=34%  Similarity=0.476  Sum_probs=36.1

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCC-eEEEEeCChHHHHH
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYGESLT  419 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~-~i~v~~R~~~~a~~  419 (493)
                      +.+++++|.|+ |+.|++++..|.+.|+ +|+++.|+.++.++
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~   46 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD   46 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh
Confidence            45789999996 8899999999999999 99999999877654

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=93.28  E-value=0.18  Score=55.49  Aligned_cols=93  Identities=16%  Similarity=0.042  Sum_probs=61.0

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.||++.|+|.|.+|+.++..|...|++|+.++|+.....  +..++..           . .++++-+ ++.++++.
T Consensus       136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~--~~~~g~~-----------~-~~l~ell-~~aDiV~l  200 (526)
T PRK13581        136 VELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPER--AAQLGVE-----------L-VSLDELL-ARADFITL  200 (526)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH--HHhcCCE-----------E-EcHHHHH-hhCCEEEE
Confidence            457799999999999999999999999999999999643221  1222111           1 1344444 55678888


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      .+|+.-.-..+..  -..|..+-++.++++
T Consensus       201 ~lP~t~~t~~li~--~~~l~~mk~ga~lIN  228 (526)
T PRK13581        201 HTPLTPETRGLIG--AEELAKMKPGVRIIN  228 (526)
T ss_pred             ccCCChHhhcCcC--HHHHhcCCCCeEEEE
Confidence            8887655444432  234455445666554

>PRK06436 glycerate dehydrogenase; Provisional

Probab=93.27  E-value=0.14  Score=52.33  Aligned_cols=38  Identities=34%  Similarity=0.496  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      ..+.||++.|||.|.+|++++..|+..|++|+.++|+.
T Consensus       118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~  155 (303)
T PRK06436        118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSY  155 (303)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            35789999999999999999998888899999999984

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.24  E-value=0.21  Score=48.41  Aligned_cols=46  Identities=24%  Similarity=0.362  Sum_probs=38.4

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEE-EeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v-~~R~~~~a~~la~~~~  425 (493)
                      .+++++|.|+ ||.|++++..|.+.|++|++ ..|+.++.+++++.+.
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~   50 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIE   50 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            4689999998 67999999999999997655 6888888888777654

>PRK12747 short chain dehydrogenase; Provisional

Probab=93.23  E-value=0.22  Score=48.48  Aligned_cols=46  Identities=30%  Similarity=0.353  Sum_probs=37.2

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEe-CChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~-R~~~~a~~la~~~~  425 (493)
                      ++|+++|.|+ ||.|++++..|++.|++|.+.. |+.++.++++..+.
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~   50 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQ   50 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHH
Confidence            4789999997 7899999999999999888864 66677776665543

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=93.22  E-value=0.41  Score=49.30  Aligned_cols=66  Identities=24%  Similarity=0.097  Sum_probs=48.4

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH-hhhhhhcc-cccceEEEEeeccccc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL-MSWLLLNT-LLFDSVIVIRILLFTW  447 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~-~~~~~~~~-~~~~~~~v~~~l~~~~  447 (493)
                      .++.|||+|.-|.|++..|++.|.+|.++.|+++-.+++-.. -+..+++. .-.++++.-.++.+-.
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~   69 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEAL   69 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHH
Confidence            479999999999999999999999999999999999888764 22223321 2223555555555444

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=93.22  E-value=0.33  Score=49.64  Aligned_cols=35  Identities=20%  Similarity=0.111  Sum_probs=32.0

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      ..+++|+|+|++|...+..|++.|++|+++.|+..
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~   39 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY   39 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            35799999999999999999999999999999863

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=93.18  E-value=0.16  Score=55.87  Aligned_cols=94  Identities=18%  Similarity=0.085  Sum_probs=60.2

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.||++.|+|.|.+|++++..|...|++|+.++|.....  .+..++...           ..++++-+ ++.++++.
T Consensus       134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~--~~~~~g~~~-----------~~~l~ell-~~aDvV~l  199 (525)
T TIGR01327       134 TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPE--RAEQLGVEL-----------VDDLDELL-ARADFITV  199 (525)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChh--HHHhcCCEE-----------cCCHHHHH-hhCCEEEE
Confidence            45789999999999999999999999999999999863221  112222111           12343333 45677777


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      .+|+.-.-..+..  -..|..+-++.++.+
T Consensus       200 ~lPlt~~T~~li~--~~~l~~mk~ga~lIN  227 (525)
T TIGR01327       200 HTPLTPETRGLIG--AEELAKMKKGVIIVN  227 (525)
T ss_pred             ccCCChhhccCcC--HHHHhcCCCCeEEEE
Confidence            7776655444432  234555455666655

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.17  E-value=0.22  Score=50.56  Aligned_cols=49  Identities=35%  Similarity=0.463  Sum_probs=40.2

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-YGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~-~~~a~~la~~~~  425 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++.+|. .++++++++.+.
T Consensus         8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~   58 (306)
T PRK07792          8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIR   58 (306)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHH
Confidence            4578999999998 679999999999999998888874 456667766554

>PRK07856 short chain dehydrogenase; Provisional

Probab=93.15  E-value=0.16  Score=49.59  Aligned_cols=39  Identities=36%  Similarity=0.549  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|+++.|+.++
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~   42 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE   42 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            356899999997 779999999999999999999998765

>PRK06523 short chain dehydrogenase; Provisional

Probab=93.14  E-value=0.16  Score=49.62  Aligned_cols=39  Identities=38%  Similarity=0.465  Sum_probs=34.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|+++.|+.++
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~   45 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD   45 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh
Confidence            467899999997 789999999999999999999998654

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=93.13  E-value=0.12  Score=49.56  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=31.5

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~  413 (493)
                      +++.+|+|+|+||.|..++..|+..|+ +|++++.+
T Consensus        17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            456899999999999999999999999 89998754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK06484 short chain dehydrogenase; Validated

Probab=93.12  E-value=0.2  Score=54.50  Aligned_cols=48  Identities=23%  Similarity=0.368  Sum_probs=42.2

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ...+|.++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.++
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~  314 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG  314 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC
Confidence            346899999987 779999999999999999999999999888887653

>TIGR02415 23BDH acetoin reductases

Probab=93.11  E-value=0.23  Score=48.19  Aligned_cols=44  Identities=23%  Similarity=0.289  Sum_probs=38.3

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      |+++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++.+.+.
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~   45 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEIN   45 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            47899996 889999999999999999999999888877776554

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=93.10  E-value=0.14  Score=48.00  Aligned_cols=39  Identities=28%  Similarity=0.474  Sum_probs=32.4

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      ..+++|+|+|||+|-+|--++..|++.|.+|+++-|++.
T Consensus       163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  163 EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            457899999999999999999999999999999999864

...

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=93.09  E-value=0.22  Score=46.29  Aligned_cols=45  Identities=29%  Similarity=0.293  Sum_probs=37.2

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .+...+++|+|+|-+|+.++..|..+|+++++.+...++.+++-.
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~   61 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLES   61 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhc
Confidence            355689999999999999999999999999999999888777644

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.08  E-value=0.2  Score=54.78  Aligned_cols=47  Identities=28%  Similarity=0.122  Sum_probs=40.3

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      .+.+|+|+|+|.+|.+++..++..|++|++++++.++.+ .++.++..
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle-~aeslGA~  210 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAE-QVESMGAE  210 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcCCe
Confidence            478999999999999999999999999999999988865 55556543

>PRK08324 short chain dehydrogenase; Validated

Probab=93.07  E-value=0.22  Score=56.49  Aligned_cols=49  Identities=39%  Similarity=0.442  Sum_probs=43.1

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+.||+++|.|+ ||.|++++..|.+.|++|++++|+.++.+.+++.+.
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~  467 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELG  467 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHh
Confidence            3467899999995 999999999999999999999999998888777654

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.06  E-value=0.2  Score=40.33  Aligned_cols=32  Identities=34%  Similarity=0.394  Sum_probs=29.6

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      +++|+|+|-.|--++..|++.|.+|+++.|..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD   32 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence            58999999999999999999999999999854

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=93.05  E-value=0.98  Score=47.18  Aligned_cols=122  Identities=25%  Similarity=0.302  Sum_probs=78.8

Q ss_pred             HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEec-----
Q 011136          273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----  342 (493)
Q Consensus       273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~-----  342 (493)
                      ...++++|++..-..++-    +++.+.++.+ .+++..|.-|-.|....    +|+    -+.+.+++.-.--+     
T Consensus       125 ~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~----id~----~~i~~aI~P~KDVDGl~p~  196 (364)
T PLN02616        125 KKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSH----MDE----QNILNAVSIEKDVDGFHPL  196 (364)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCC----CCH----HHHHhccCcccCcccCChh
Confidence            457889999875444443    3677777777 55789999999997532    221    12223333322110     


Q ss_pred             cCCeEE-EE-e-----ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeCC
Q 011136          343 SDGKLF-GY-N-----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       343 ~~g~l~-G~-N-----TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R~  413 (493)
                      .-|++. |. +     .--.|++.-|+..           +.+++||+|+|||-+. .|+-++.-|.+.|+.|+++...
T Consensus       197 N~G~L~~g~~~~~f~PCTp~avielL~~y-----------~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~  264 (364)
T PLN02616        197 NIGRLAMRGREPLFVPCTPKGCIELLHRY-----------NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  264 (364)
T ss_pred             hhHHHhcCCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC
Confidence            012232 11 1     1256777776653           2678999999999988 9999999999999999988753

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=93.04  E-value=0.64  Score=47.61  Aligned_cols=79  Identities=18%  Similarity=-0.015  Sum_probs=48.9

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      +++.|||+|-+|..+++.|+..|. +|++++++.+.++..+-++...........+++.-.+.++-=..|+.|++=+||-
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag~p~   81 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAGLPR   81 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCCCCC
Confidence            479999999999999999999887 9999999877665443322222111111123433233333223556666666665

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.04  E-value=0.25  Score=49.96  Aligned_cols=85  Identities=24%  Similarity=0.310  Sum_probs=62.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEe-ec------c-----
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIR-IL------L-----  444 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~-~l------~-----  444 (493)
                      .+.||.|+|=|| .|.|+++|+.|+..|++++++.|..++-+.+++++.......    +++++. ++      .     
T Consensus         9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~----~v~~~~~Dvs~~~~~~~~~~~   84 (282)
T KOG1205|consen    9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLE----KVLVLQLDVSDEESVKKFVEW   84 (282)
T ss_pred             HhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcC----ccEEEeCccCCHHHHHHHHHH
Confidence            456899999999 899999999999999999999998888888888777655321    344443 00      0     


Q ss_pred             --cccCCceEEEEeccccCCchhhHh
Q 011136          445 --FTWHLKFFIAANIIHLGNHLEWVT  468 (493)
Q Consensus       445 --~~~~~~~~i~~n~tplG~~~~~~~  468 (493)
                        .+. .+.++++|--+++. ...+.
T Consensus        85 ~~~~f-g~vDvLVNNAG~~~-~~~~~  108 (282)
T KOG1205|consen   85 AIRHF-GRVDVLVNNAGISL-VGFLE  108 (282)
T ss_pred             HHHhc-CCCCEEEecCcccc-ccccc
Confidence              233 56789999888877 44443

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=93.03  E-value=0.58  Score=50.34  Aligned_cols=96  Identities=17%  Similarity=0.155  Sum_probs=63.4

Q ss_pred             cHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEE-EEeCC----------hHHHHHHH
Q 011136          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANRT----------YGESLTFL  421 (493)
Q Consensus       353 D~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~-v~~R~----------~~~a~~la  421 (493)
                      .++|.+.+++..+..       .+.+++|++|+|-|.|-+|..++..|.+.|++|+ |.+.+          .++...+.
T Consensus       216 TG~Gv~~~~~~~l~~-------~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~  288 (454)
T PTZ00079        216 TGYGLVYFVLEVLKK-------LNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLM  288 (454)
T ss_pred             cHHHHHHHHHHHHHH-------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHH
Confidence            478888877766543       1367899999999999999999999999999766 87776          55554443


Q ss_pred             HHhhh-----hhhcccccceEEEEeecccccCCceEEEEec
Q 011136          422 RLMSW-----LLLNTLLFDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       422 ~~~~~-----~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                      +.-..     ..+... ......+ +-++.|.-+.+|++||
T Consensus       289 ~~k~~~~g~i~~~~~~-~~~a~~~-~~~~~~~~~cDI~iPc  327 (454)
T PTZ00079        289 DLKNVKRGRLKEYAKH-SSTAKYV-PGKKPWEVPCDIAFPC  327 (454)
T ss_pred             HHHhhcCCcHHhhhhc-cCCcEEe-CCcCcccCCccEEEec
Confidence            21110     111110 1112222 3457788888999965

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=93.00  E-value=3.8  Score=39.34  Aligned_cols=136  Identities=16%  Similarity=0.069  Sum_probs=86.9

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCC-HHHH
Q 011136           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGD-ENER  100 (493)
Q Consensus        22 ~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~-~~~~  100 (493)
                      +.+++|+.+-..|.+++++-+++. ....|+||.=.+++..+.+ +.++.+++..  ++++.+..      .... ...+
T Consensus         2 ~~~~l~~alD~~~~~~~~~~~~~~-~~~~~~vk~g~~l~~~~G~-~~v~~ir~~~--~i~~D~k~------~di~~~~~~   71 (215)
T PRK13813          2 KDSRIILALDVTDRERALKIAEEL-DDYVDAIKVGWPLVLASGL-GIIEELKRYA--PVIADLKV------ADIPNTNRL   71 (215)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHhc-cccCCEEEEcHHHHHhhCH-HHHHHHHhcC--CEEEEeec------cccHHHHHH
Confidence            568899999999999999988876 3447899999988765543 4577776544  56654442      1122 2222


Q ss_pred             HHHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCC-----CHHHHHHHHHHHHHcCCCEEE
Q 011136          101 VDVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTP-----SVEDLSNLVARIQASGADIVK  171 (493)
Q Consensus       101 ~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp-----~~~el~~~~~~~~~~gaDIvK  171 (493)
                        ..+.+.+.|+|++.+=.....+.+..+. ..++.+.++.+-.+- . ++     -.+.+........+.|++..|
T Consensus        72 --~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~-~-~~~~~~~~~~~~~~v~~m~~e~G~~g~~  144 (215)
T PRK13813         72 --ICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEM-S-HPGALEFIQPHADKLAKLAQEAGAFGVV  144 (215)
T ss_pred             --HHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeC-C-CCCCCCCHHHHHHHHHHHHHHhCCCeEE
Confidence              2266778899999997766544444443 334566777654332 1 22     123345555566678999887

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=92.99  E-value=0.54  Score=48.20  Aligned_cols=46  Identities=28%  Similarity=0.226  Sum_probs=40.7

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      |+.|||+|.+|.++++.|...|.  ++++++++.++++..+.++....
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~   48 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHAT   48 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhh
Confidence            47899999999999999998885  89999999999998888877644

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=92.96  E-value=0.21  Score=49.03  Aligned_cols=42  Identities=31%  Similarity=0.298  Sum_probs=36.6

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTF  420 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~l  420 (493)
                      .++++++|+|+ |+.|++++..|.+.|++|+.+.|+.++++.+
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~   57 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS   57 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence            45789999996 8899999999999999999999998876554

>PRK08226 short chain dehydrogenase; Provisional

Probab=92.90  E-value=0.24  Score=48.46  Aligned_cols=44  Identities=23%  Similarity=0.312  Sum_probs=35.9

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      +++|+++|.|+ ||.|++++..|.+.|++|++++|+.+ ..++++.
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~   48 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADE   48 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHH
Confidence            45789999986 78999999999999999999999875 3344333

>PRK12746 short chain dehydrogenase; Provisional

Probab=92.89  E-value=0.26  Score=47.86  Aligned_cols=46  Identities=35%  Similarity=0.452  Sum_probs=37.9

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEE-EeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v-~~R~~~~a~~la~~~  424 (493)
                      +++++++|.|+ ||.|++++..|.+.|++|.+ ..|+.++.+++.+.+
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~   51 (254)
T PRK12746          4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREI   51 (254)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            45789999996 78999999999999997766 589888777766654

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=92.89  E-value=2.1  Score=44.56  Aligned_cols=137  Identities=18%  Similarity=0.236  Sum_probs=85.5

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  329 (493)
                      .-++| +|-+.+.-- .-...++++|++..-..++-    +++.+.++.+ .+++..|.-|-.|....    +|+    -
T Consensus        91 iIlvGddpaS~~Yv~-~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~h----id~----~  161 (345)
T PLN02897         91 VVLVGQQRDSQTYVR-NKIKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQH----LDE----S  161 (345)
T ss_pred             EEEeCCChHHHHHHH-HHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH----H
Confidence            35566 444433332 23456889999887665553    3577777777 56889999999997532    221    1


Q ss_pred             HHhcceeeEEEec-----cCCeE-EEEe------ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHH
Q 011136          330 KSIGAVNCIIRRQ-----SDGKL-FGYN------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKAL  396 (493)
Q Consensus       330 ~~igAvNti~~~~-----~~g~l-~G~N------TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~  396 (493)
                      +.+.+++.-.--+     .-|++ .|.+      .--.|++.-|++.           +.+++||+++|||-+. .|+-+
T Consensus       162 ~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~-----------~i~l~GK~vvVIGRS~iVGkPl  230 (345)
T PLN02897        162 KILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRS-----------GVEIAGKNAVVIGRSNIVGLPM  230 (345)
T ss_pred             HHHhccCcccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccccHHH
Confidence            2233333322110     01222 1111      1246677766653           2678999999999988 89999


Q ss_pred             HHHHHhCCCeEEEEeC
Q 011136          397 AYGAKAKGARVVIANR  412 (493)
Q Consensus       397 ~~~L~~~g~~i~v~~R  412 (493)
                      +.-|.+.|+.|+++..
T Consensus       231 a~LL~~~~ATVTicHs  246 (345)
T PLN02897        231 SLLLQRHDATVSTVHA  246 (345)
T ss_pred             HHHHHHCCCEEEEEcC
Confidence            9999999999988875

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=92.87  E-value=0.18  Score=49.64  Aligned_cols=36  Identities=28%  Similarity=0.248  Sum_probs=31.0

Q ss_pred             cCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       379 l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      +++|.++|.|+   +|.|++++..|++.|++|++..|+.
T Consensus         4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~   42 (258)
T PRK07370          4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPD   42 (258)
T ss_pred             cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCc
Confidence            46899999997   4999999999999999998886543

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=92.85  E-value=11  Score=40.91  Aligned_cols=210  Identities=15%  Similarity=0.122  Sum_probs=125.5

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEE----EecC---CCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136           34 SVDKMVVDMGKANASGADLVEI----RLDG---LKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (493)
Q Consensus        34 ~~~e~~~~~~~~~~~~aD~vEl----RlD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (493)
                      +.++.+.-++.+.+.|.+.+|.    ..|.   +..-++.+.++.+++. .+.++-.-+|..+--|...-.++.....++
T Consensus        23 ~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~  102 (467)
T PRK14041         23 RTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVK  102 (467)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHH
Confidence            4455555566666779999999    3332   1112345677777664 356666667865555653445555666788


Q ss_pred             HHHHhCCcEEEEEccccc-chh-HHHhhcCCCCcEEEEEcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 011136          106 LAMELGADYIDVELQVAR-EFN-DSIRGKKPEKCKVIVSSHNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--LDI  179 (493)
Q Consensus       106 ~~l~~~~dyIDIEl~~~~-~~~-~~l~~~~~~~~kiI~S~H~f~~tp--~~~el~~~~~~~~~~gaDIvKia~~a--~s~  179 (493)
                      .+++.|++.+-|=....+ +.+ ..+..+++.+..+.+.... ...|  +.+.+.+..+++.+.|||.+-|+=|+  -+|
T Consensus       103 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~-t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P  181 (467)
T PRK14041        103 KVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISY-TVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTP  181 (467)
T ss_pred             HHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEe-ccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCH
Confidence            999999999888655543 112 2222334455566544432 1134  55678999999999999998887555  457


Q ss_pred             hHHHHHHHHhcc-CCCCEEEE--ecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136          180 TDVARVFQITVH-SQVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (493)
Q Consensus       180 ~D~~~l~~~~~~-~~~PlIa~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~  245 (493)
                      .++.++.+.+++ .+.|+-.-  ++--+|..+-+..-.-|.-..=+++.. -+...||++.+++...++
T Consensus       182 ~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~-~g~gagN~atE~lv~~L~  249 (467)
T PRK14041        182 KRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISP-FSMGTSQPPFESMYYAFR  249 (467)
T ss_pred             HHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccc-cCCCCCChhHHHHHHHHH
Confidence            888888877654 35565433  333334444444434444333233332 122346999988877665

>PRK05855 short chain dehydrogenase; Validated

Probab=92.85  E-value=0.24  Score=54.08  Aligned_cols=48  Identities=31%  Similarity=0.439  Sum_probs=42.6

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..++++++|+|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus       312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~  360 (582)
T PRK05855        312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIR  360 (582)
T ss_pred             cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            456789999997 899999999999999999999999999888887664

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=92.84  E-value=0.2  Score=46.19  Aligned_cols=36  Identities=31%  Similarity=0.371  Sum_probs=33.7

Q ss_pred             EEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          384 FVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       384 vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      |+|+|| |.+|+.++..|.+.|++|+++.|+.++.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~   37 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED   37 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence            689997 899999999999999999999999998876

...

>PLN02712 arogenate dehydrogenase

Probab=92.83  E-value=0.39  Score=54.40  Aligned_cols=37  Identities=24%  Similarity=0.302  Sum_probs=32.9

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      +.+++.|||.|.+|++++.+|.+.|++|++++|+..+
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~   87 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS   87 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            3468999999999999999999999999999998543

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.80  E-value=0.24  Score=47.91  Aligned_cols=46  Identities=24%  Similarity=0.394  Sum_probs=36.6

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~-~R~~~~a~~la~~~  424 (493)
                      +++|+++|.|+ ||.|++++..|.+.|++|++. .|+.++.+.+...+
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~   50 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL   50 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh
Confidence            45789999996 789999999999999987765 55677777766544

>PRK07201 short chain dehydrogenase; Provisional

Probab=92.79  E-value=0.24  Score=55.52  Aligned_cols=48  Identities=27%  Similarity=0.402  Sum_probs=42.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|+++.|+.++.+++++.+.
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~  416 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIR  416 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            467899999997 889999999999999999999999999888877664

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.79  E-value=0.23  Score=49.08  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=31.0

Q ss_pred             cCCCEEEEEe---cchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          379 LAGKLFVVIG---AGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       379 l~~~~vlvlG---aGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      +++|.++|-|   ++|.|++++..|++.|++|++..|+
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~   41 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVV   41 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence            5689999999   4699999999999999999888775

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=92.78  E-value=0.26  Score=55.96  Aligned_cols=49  Identities=29%  Similarity=0.405  Sum_probs=43.1

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .++.+|++||.|+ ||.|++++..|.+.|++|++++|+.++.+.+.+.+.
T Consensus       410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~  459 (676)
T TIGR02632       410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEIN  459 (676)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHH
Confidence            4578999999997 789999999999999999999999988888776654

>PLN02602 lactate dehydrogenase

Probab=92.76  E-value=0.68  Score=48.41  Aligned_cols=47  Identities=13%  Similarity=0.121  Sum_probs=42.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      +++.|||+|.+|.++++.|...|.  +|.+++++.++++..+.++....
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~   86 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA   86 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh
Confidence            699999999999999999998885  89999999999988888777654

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=92.74  E-value=2.6  Score=39.71  Aligned_cols=106  Identities=25%  Similarity=0.356  Sum_probs=61.3

Q ss_pred             HHHHHHHHhhhhcCCCEEEEEecCCCCCCchhH---HHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 011136           36 DKMVVDMGKANASGADLVEIRLDGLKNFNPREN---IKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA  112 (493)
Q Consensus        36 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~---l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~  112 (493)
                      ++....++.+.+.|+++|.+|.-.+.+.+-.+.   +..+.+..+.|++++-+                  .+.+.+.|+
T Consensus        13 ~~~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~~------------------~~la~~~g~   74 (196)
T TIGR00693        13 ADLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVNDR------------------VDLALALGA   74 (196)
T ss_pred             ccHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEECH------------------HHHHHHcCC
Confidence            346667777788999999999743221110112   23333445788887431                  245567787


Q ss_pred             cEEEEEcc-cccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          113 DYIDVELQ-VAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       113 dyIDIEl~-~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      +.|=+... .+....+.+   ...+..|-+|.|+.      ++    ..++.+.|+|++++
T Consensus        75 ~GvHl~~~~~~~~~~r~~---~~~~~~ig~s~h~~------~e----~~~a~~~g~dyi~~  122 (196)
T TIGR00693        75 DGVHLGQDDLPASEARAL---LGPDKIIGVSTHNL------EE----LAEAEAEGADYIGF  122 (196)
T ss_pred             CEEecCcccCCHHHHHHh---cCCCCEEEEeCCCH------HH----HHHHhHcCCCEEEE
Confidence            76655322 222222222   23456788999942      23    24566789999997

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.74  E-value=0.19  Score=49.58  Aligned_cols=46  Identities=22%  Similarity=0.275  Sum_probs=35.4

Q ss_pred             cCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCC---hHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRT---YGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~---~~~a~~la~~~  424 (493)
                      +++|.++|.|+   +|.|++++..|++.|++|++..|.   .++.+++.+.+
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~   55 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF   55 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhc
Confidence            45889999994   699999999999999999887653   44555554433

>PRK06924 short chain dehydrogenase; Provisional

Probab=92.71  E-value=0.23  Score=48.19  Aligned_cols=40  Identities=28%  Similarity=0.418  Sum_probs=33.2

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHH
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY-GESLTFL  421 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~-~~a~~la  421 (493)
                      |+++|.|+ ||.|++++..|++.|++|+++.|+. ++.+++.
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~   43 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLA   43 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHH
Confidence            57999996 8899999999999999999999986 4444443

>PRK08278 short chain dehydrogenase; Provisional

Probab=92.71  E-value=0.27  Score=48.88  Aligned_cols=38  Identities=42%  Similarity=0.602  Sum_probs=33.8

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|+++.|+.++
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   42 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEP   42 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeccccc
Confidence            46789999997 789999999999999999999998653

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=92.68  E-value=0.65  Score=48.41  Aligned_cols=82  Identities=12%  Similarity=0.059  Sum_probs=50.4

Q ss_pred             EEEEEecchHHHHHHHHHHhCC--------CeEEEEeC-----ChHHHHHHHHHhhhhh-hccc-ccceEEEEeeccccc
Q 011136          383 LFVVIGAGGAGKALAYGAKAKG--------ARVVIANR-----TYGESLTFLRLMSWLL-LNTL-LFDSVIVIRILLFTW  447 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g--------~~i~v~~R-----~~~~a~~la~~~~~~~-~~~~-~~~~~~v~~~l~~~~  447 (493)
                      ++.|||+|..|.|++..|++.|        .+|.++.|     +.+-.+.+.+...... ++.. ..+++++..++++..
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            4789999999999999999988        79999999     3333333333211111 1111 123566666665432


Q ss_pred             -CCceEEEEeccccCCchhhHhhh
Q 011136          448 -HLKFFIAANIIHLGNHLEWVTAA  470 (493)
Q Consensus       448 -~~~~~i~~n~tplG~~~~~~~~~  470 (493)
                       ..|..|++      ++...+.+-
T Consensus        81 ~~ADiIIlA------VPs~~i~~v   98 (342)
T TIGR03376        81 KGADILVFV------IPHQFLEGI   98 (342)
T ss_pred             hcCCEEEEE------CChHHHHHH
Confidence             23555666      666666543

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=92.67  E-value=0.17  Score=51.15  Aligned_cols=37  Identities=19%  Similarity=0.162  Sum_probs=34.2

Q ss_pred             EEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          386 VIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       386 vlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      +||.|-||.+++..|.+.|++|+++||+.++.+.+.+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~   37 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA   37 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence            5799999999999999999999999999999888765

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK05650 short chain dehydrogenase; Provisional

Probab=92.66  E-value=0.27  Score=48.47  Aligned_cols=44  Identities=25%  Similarity=0.379  Sum_probs=38.3

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++++|.|+ ||.|++++..|.+.|.+|+++.|+.++.+++.+.+.
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~   45 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLR   45 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            36899987 889999999999999999999999988888776554

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=92.63  E-value=0.14  Score=60.25  Aligned_cols=35  Identities=23%  Similarity=0.270  Sum_probs=32.5

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      ..||+|+|||+|.||.++|+.|++.|++|+|+.|.
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~  338 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAF  338 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Confidence            35899999999999999999999999999999875

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=92.63  E-value=0.17  Score=59.19  Aligned_cols=35  Identities=26%  Similarity=0.281  Sum_probs=32.6

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      ..+|+|+|||+|.+|.++|+.|+..|++|+|+.+.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            46899999999999999999999999999999974

>PRK07775 short chain dehydrogenase; Provisional

Probab=92.57  E-value=0.33  Score=48.18  Aligned_cols=46  Identities=24%  Similarity=0.273  Sum_probs=39.0

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      .+.|.++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++.+.+
T Consensus         8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~   54 (274)
T PRK07775          8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKI   54 (274)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45689999997 88999999999999999999999888777665544

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=92.56  E-value=4.6  Score=39.77  Aligned_cols=133  Identities=17%  Similarity=0.157  Sum_probs=84.0

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCC----------C--Cc---hhHHHHHHhhCCCcEEEEeccCCC
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN----------F--NP---RENIKTLIKESPVPTLFTYRPIWE   89 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~----------~--~~---~~~l~~l~~~~~~PiI~T~R~~~e   89 (493)
                      .+.+.+.+.|.++...-++.+ +.++|.||+-.-+=..          +  ++   .+.++.++ ...+|+.+-+|... 
T Consensus        69 ~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~-  145 (231)
T TIGR00736        69 LVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK-ELNKPIFVKIRGNC-  145 (231)
T ss_pred             CEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH-cCCCcEEEEeCCCC-
Confidence            466899999999999988876 5689999997654110          0  22   12334444 45789999999621 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc------chhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHH
Q 011136           90 GGQYDGDENERVDVLRLAMELGADYIDVELQVAR------EFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQ  163 (493)
Q Consensus        90 GG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~------~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~  163 (493)
                            ++....++.+.+.+.|+++|.|+-..+-      +.++++... -+...||++==-+    +.++..+.++   
T Consensus       146 ------~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~-~~~ipIIgNGgI~----s~eda~e~l~---  211 (231)
T TIGR00736       146 ------IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEE-FNDKIIIGNNSID----DIESAKEMLK---  211 (231)
T ss_pred             ------CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHh-cCCCcEEEECCcC----CHHHHHHHHH---
Confidence                  2245667777888899999999855432      234444332 1236678753212    3444444443   


Q ss_pred             HcCCCEEEEEee
Q 011136          164 ASGADIVKFATT  175 (493)
Q Consensus       164 ~~gaDIvKia~~  175 (493)
                       .|||-|=+++.
T Consensus       212 -~GAd~VmvgR~  222 (231)
T TIGR00736       212 -AGADFVSVARA  222 (231)
T ss_pred             -hCCCeEEEcHh
Confidence             59998877653

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=92.55  E-value=2.7  Score=45.06  Aligned_cols=134  Identities=17%  Similarity=0.168  Sum_probs=80.6

Q ss_pred             CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCc-EEEEeccCCCCCCCCCCHHHHH
Q 011136           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVP-TLFTYRPIWEGGQYDGDENERV  101 (493)
Q Consensus        23 ~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~P-iI~T~R~~~eGG~~~~~~~~~~  101 (493)
                      +|++++-+-..++++.+..++.+.+.|+|.+|.-..... ....+.++.+++....+ ++..+|.... |      ..  
T Consensus         3 ~~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~-~~~~~~i~~l~~~~~~~~ii~D~kl~d~-g------~~--   72 (430)
T PRK07028          3 RPILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIK-SEGMNAIRTLRKNFPDHTIVADMKTMDT-G------AI--   72 (430)
T ss_pred             CceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHH-HhhHHHHHHHHHHCCCCEEEEEeeeccc-h------HH--
Confidence            688889999999999999999988899999997221110 01134566666554444 5556776433 2      22  


Q ss_pred             HHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 011136          102 DVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (493)
Q Consensus       102 ~ll~~~l~~~~dyIDIEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia  173 (493)
                       .++.+.+.|+++|-+-...++.....+. ..++.+.+++.-..   .+++.   .+.++++.+.|+|++++.
T Consensus        73 -~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~---s~~t~---~e~~~~a~~~GaD~I~~~  138 (430)
T PRK07028         73 -EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLI---NVPDP---VKRAVELEELGVDYINVH  138 (430)
T ss_pred             -HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEec---CCCCH---HHHHHHHHhcCCCEEEEE
Confidence             4557788999998864322211122222 22335667765211   11121   234566777899999875

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=92.54  E-value=0.24  Score=48.52  Aligned_cols=37  Identities=30%  Similarity=0.488  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~   42 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE   42 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence            356899999987 7899999999999999999999864

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=92.52  E-value=1.4  Score=43.76  Aligned_cols=153  Identities=16%  Similarity=0.112  Sum_probs=85.2

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccC-CCCCCCCCCHHHHHHHHHHHHHh
Q 011136           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPI-WEGGQYDGDENERVDVLRLAMEL  110 (493)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~-~eGG~~~~~~~~~~~ll~~~l~~  110 (493)
                      ..+.+++..-++++.+.++|+|=+---++.      ..... ...+.++++++-.. +.|.  ...........+.+++.
T Consensus        32 ~~~~~~~~~~~~~a~~~~~~~v~~~p~~~~------~~~~~-~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~v~~al~~  102 (258)
T TIGR01949        32 IKGLVDIRKTVNEVAEGGADAVLLHKGIVR------RGHRG-YGKDVGLIIHLSASTSLSP--DPNDKRIVTTVEDAIRM  102 (258)
T ss_pred             CCCcCCHHHHHHHHHhcCCCEEEeCcchhh------hcccc-cCCCCcEEEEEcCCCCCCC--CCCcceeeeeHHHHHHC
Confidence            346677777777777778888876543322      11111 23467887766211 1221  11122344568889999


Q ss_pred             CCcEEEEEccccc----chh---HHHhh-cCCCCcEEEEEcc-----cCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Q 011136          111 GADYIDVELQVAR----EFN---DSIRG-KKPEKCKVIVSSH-----NYQYTPSVEDLSNLVARIQASGADIVKFATTAL  177 (493)
Q Consensus       111 ~~dyIDIEl~~~~----~~~---~~l~~-~~~~~~kiI~S~H-----~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~  177 (493)
                      |++.|++......    +..   .++.. .++.+..+|+-.+     ...  .+.+++.+..+.+.+.|||++|.-..  
T Consensus       103 Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~--~~~~~~~~~~~~a~~~GADyikt~~~--  178 (258)
T TIGR01949       103 GADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDD--RDPELVAHAARLGAELGADIVKTPYT--  178 (258)
T ss_pred             CCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCccccc--ccHHHHHHHHHHHHHHCCCEEeccCC--
Confidence            9999999876331    222   33332 2345666666322     211  22334444457777899999997532  


Q ss_pred             CHhHHHHHHHHhccCCCCEEEE
Q 011136          178 DITDVARVFQITVHSQVPIIGL  199 (493)
Q Consensus       178 s~~D~~~l~~~~~~~~~PlIa~  199 (493)
                        .|...+-++......|+.++
T Consensus       179 --~~~~~l~~~~~~~~iPVva~  198 (258)
T TIGR01949       179 --GDIDSFRDVVKGCPAPVVVA  198 (258)
T ss_pred             --CCHHHHHHHHHhCCCcEEEe
Confidence              23333344444457888765

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=92.49  E-value=0.32  Score=51.44  Aligned_cols=38  Identities=26%  Similarity=0.406  Sum_probs=35.1

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      ..+.||++.|||.|.+|+.++..|...|++|.++++..
T Consensus       112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~  149 (381)
T PRK00257        112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPR  149 (381)
T ss_pred             CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcc
Confidence            57889999999999999999999999999999999754

>PRK06484 short chain dehydrogenase; Validated

Probab=92.49  E-value=0.26  Score=53.63  Aligned_cols=46  Identities=26%  Similarity=0.411  Sum_probs=40.8

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++|.++|.|+ +|.|++++..|++.|++|+++.|+.++.+++++.++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   50 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLG   50 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC
Confidence            4789999987 779999999999999999999999999888877653

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=92.48  E-value=4  Score=42.08  Aligned_cols=89  Identities=19%  Similarity=0.375  Sum_probs=61.6

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC----C------C--Cc---hhHHHHHHhhCCCcEEEEeccCCC
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLK----N------F--NP---RENIKTLIKESPVPTLFTYRPIWE   89 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~----~------~--~~---~~~l~~l~~~~~~PiI~T~R~~~e   89 (493)
                      .+.+.|.+++.+++..-++.+.+.|+|.|||-.-.=.    .      +  ++   .+.++.+++..++|+.+-+|.   
T Consensus        66 ~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~---  142 (321)
T PRK10415         66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRT---  142 (321)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEc---
Confidence            3458999999999988887766789999999766411    0      0  12   233445555567898888883   


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCcEEEEE
Q 011136           90 GGQYDGDENERVDVLRLAMELGADYIDVE  118 (493)
Q Consensus        90 GG~~~~~~~~~~~ll~~~l~~~~dyIDIE  118 (493)
                       | +..+.++..++.+.+.+.|+++|.|.
T Consensus       143 -G-~~~~~~~~~~~a~~le~~G~d~i~vh  169 (321)
T PRK10415        143 -G-WAPEHRNCVEIAQLAEDCGIQALTIH  169 (321)
T ss_pred             -c-ccCCcchHHHHHHHHHHhCCCEEEEe
Confidence             3 33333456677778888899999885

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.48  E-value=0.35  Score=41.36  Aligned_cols=41  Identities=27%  Similarity=0.323  Sum_probs=35.4

Q ss_pred             EEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      ++|+|.|..|+.++..|.+.+.+++++.+++++.+++.+..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~   41 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG   41 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc
Confidence            68999999999999999995559999999999998887643

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=92.47  E-value=0.27  Score=49.43  Aligned_cols=76  Identities=17%  Similarity=0.052  Sum_probs=52.3

Q ss_pred             CCEEEEEecchHHHHHHHHHHhC--CCeE-EEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAK--GARV-VIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~--g~~i-~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                      ..++-|||.|.+|+..+..|...  ++++ .|++|+.++++++++.++....          ..++++-. .+.++++.+
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~----------~~~~eell-~~~D~Vvi~   74 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPP----------VVPLDQLA-THADIVVEA   74 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcc----------cCCHHHHh-cCCCEEEEC
Confidence            46899999999999999999863  5665 4899999999999887663210          01121111 334677878


Q ss_pred             cccCCchhhH
Q 011136          458 IHLGNHLEWV  467 (493)
Q Consensus       458 tplG~~~~~~  467 (493)
                      +|-..+.+..
T Consensus        75 tp~~~h~e~~   84 (271)
T PRK13302         75 APASVLRAIV   84 (271)
T ss_pred             CCcHHHHHHH
Confidence            8876664444

>cd00945 Aldolase_Class_I Class I aldolases

Probab=92.47  E-value=4.6  Score=37.43  Aligned_cols=92  Identities=18%  Similarity=0.176  Sum_probs=61.9

Q ss_pred             cEEEEeecCCC----HHHHHHHHHhhhhcCCCEEEEEecCCCCCC--c---hhHHHHHHhh--CCCcEEEEeccCCCCCC
Q 011136           24 TLICVPIMGES----VDKMVVDMGKANASGADLVEIRLDGLKNFN--P---RENIKTLIKE--SPVPTLFTYRPIWEGGQ   92 (493)
Q Consensus        24 ~~Icv~l~~~~----~~e~~~~~~~~~~~~aD~vElRlD~l~~~~--~---~~~l~~l~~~--~~~PiI~T~R~~~eGG~   92 (493)
                      ..+.+-+...+    .++..+.++.+.+.|+|++.+-..+....+  .   .+.++.+++.  .++|+++..+....   
T Consensus        49 ~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~---  125 (201)
T cd00945          49 VPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL---  125 (201)
T ss_pred             CeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC---
Confidence            33445677777    899999999999999999999876543222  1   2345556665  48999988875322   


Q ss_pred             CCCCHHHHHHHHHHHHHhCCcEEEEEcc
Q 011136           93 YDGDENERVDVLRLAMELGADYIDVELQ  120 (493)
Q Consensus        93 ~~~~~~~~~~ll~~~l~~~~dyIDIEl~  120 (493)
                        .+.+.-.++.+.+...|+++|..-..
T Consensus       126 --~~~~~~~~~~~~~~~~g~~~iK~~~~  151 (201)
T cd00945         126 --KTADEIAKAARIAAEAGADFIKTSTG  151 (201)
T ss_pred             --CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence              34455555555556678999876544

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=92.46  E-value=9.2  Score=39.71  Aligned_cols=164  Identities=15%  Similarity=0.132  Sum_probs=96.3

Q ss_pred             cccccCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEE---------ecC-CCCCCchhHHHHHHhhC-CCcEEE
Q 011136           14 LVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIR---------LDG-LKNFNPRENIKTLIKES-PVPTLF   82 (493)
Q Consensus        14 ~~~~~~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElR---------lD~-l~~~~~~~~l~~l~~~~-~~PiI~   82 (493)
                      |..-++++..-.+...++.   ++.+.-++.+.+.|+|.||+=         +++ +...++.+.++.+++.. +..+..
T Consensus         5 i~D~TLRDG~q~~~~~f~~---~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~   81 (333)
T TIGR03217         5 ITDVTLRDGMHAIRHQFTI---EQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAV   81 (333)
T ss_pred             EEECCCCCCCcCCCCcCCH---HHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEE
Confidence            3334455555444444444   444444445556799999993         332 23233445566665443 233332


Q ss_pred             EeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc-chhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHH
Q 011136           83 TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR-EFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVA  160 (493)
Q Consensus        83 T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~  160 (493)
                      -++.    |..  .    .+-++.+.+.|++.|-|=....+ +...+.. .++..+..+.++.-+.... +.+++.+..+
T Consensus        82 ll~p----g~~--~----~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~-~~e~l~~~a~  150 (333)
T TIGR03217        82 LLLP----GIG--T----VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMT-PPEKLAEQAK  150 (333)
T ss_pred             Eecc----Ccc--C----HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCC-CHHHHHHHHH
Confidence            3332    211  1    23467888999999887655443 2223332 3445677777665442222 4568999999


Q ss_pred             HHHHcCCCEEEEEeec--CCHhHHHHHHHHhcc
Q 011136          161 RIQASGADIVKFATTA--LDITDVARVFQITVH  191 (493)
Q Consensus       161 ~~~~~gaDIvKia~~a--~s~~D~~~l~~~~~~  191 (493)
                      ++.+.|||.+-++=+.  -+|+|+.++.+.+++
T Consensus       151 ~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~  183 (333)
T TIGR03217       151 LMESYGADCVYIVDSAGAMLPDDVRDRVRALKA  183 (333)
T ss_pred             HHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHH
Confidence            9999999998877444  458999888887654

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=92.46  E-value=0.7  Score=46.98  Aligned_cols=86  Identities=20%  Similarity=0.325  Sum_probs=59.5

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcC-CCEEEEEecCC--------CCCCc---hhHHHHHHhhCCCcEEEEeccCCC
Q 011136           22 NPTLICVPIMGESVDKMVVDMGKANASG-ADLVEIRLDGL--------KNFNP---RENIKTLIKESPVPTLFTYRPIWE   89 (493)
Q Consensus        22 ~~~~Icv~l~~~~~~e~~~~~~~~~~~~-aD~vElRlD~l--------~~~~~---~~~l~~l~~~~~~PiI~T~R~~~e   89 (493)
                      +.| +.++|.+.+.++...-++.+.+.| +|+|||=+-.-        ...++   .+.++.+++..+.|+.+-++.   
T Consensus        91 ~~p-~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~---  166 (301)
T PRK07259         91 DTP-IIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP---  166 (301)
T ss_pred             CCc-EEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC---
Confidence            345 557999999999999999888888 99999954110        00011   234555666568899887763   


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 011136           90 GGQYDGDENERVDVLRLAMELGADYIDV  117 (493)
Q Consensus        90 GG~~~~~~~~~~~ll~~~l~~~~dyIDI  117 (493)
                            +.++..++.+.+.+.|+|+|++
T Consensus       167 ------~~~~~~~~a~~l~~~G~d~i~~  188 (301)
T PRK07259        167 ------NVTDIVEIAKAAEEAGADGLSL  188 (301)
T ss_pred             ------CchhHHHHHHHHHHcCCCEEEE
Confidence                  1134566777778889999976

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=92.44  E-value=0.41  Score=50.63  Aligned_cols=55  Identities=29%  Similarity=0.404  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      +.|...+.+..+..       .+.+++|++|.|-|.|-+|+-++..|.+.|++|+.++-+..
T Consensus       187 g~Gv~~~~~~a~~~-------~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g  241 (411)
T COG0334         187 GYGVFYAIREALKA-------LGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG  241 (411)
T ss_pred             ceehHHHHHHHHHH-------cCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            55665555533221       12448999999999999999999999999998887775554

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=92.44  E-value=0.46  Score=54.40  Aligned_cols=39  Identities=28%  Similarity=0.301  Sum_probs=34.8

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTF  420 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~l  420 (493)
                      +++.|||+|.+|.+++..|...|.  +|++++|+.++.+..
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a   44 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELA   44 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHH
Confidence            679999999999999999999993  899999998886654

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=92.43  E-value=12  Score=41.87  Aligned_cols=210  Identities=15%  Similarity=0.144  Sum_probs=127.8

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136           34 SVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (493)
Q Consensus        34 ~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (493)
                      +.++.+.-++.+.+.|.+.+|.-    .|.   +..-++.+.++.+++.. +.++-.-+|..+--|..+-+++...+.++
T Consensus        24 ~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~  103 (592)
T PRK09282         24 RTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVE  103 (592)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHH
Confidence            34455555556667799999995    553   11224566777777653 57777778865555655556677778899


Q ss_pred             HHHHhCCcEEEEEcccccc--hhHHHhhcCCCCcEEEEEcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 011136          106 LAMELGADYIDVELQVARE--FNDSIRGKKPEKCKVIVSSHNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--LDI  179 (493)
Q Consensus       106 ~~l~~~~dyIDIEl~~~~~--~~~~l~~~~~~~~kiI~S~H~f~~tp--~~~el~~~~~~~~~~gaDIvKia~~a--~s~  179 (493)
                      .+.+.|++.+-|=....+-  ....+..+++.+..+-+... +...|  +.+.+.+..+++.+.|||.+-|+=|+  -++
T Consensus       104 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~-~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P  182 (592)
T PRK09282        104 KAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTIS-YTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTP  182 (592)
T ss_pred             HHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEE-eccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCH
Confidence            9999999988876544331  22222223344555543332 22234  56779999999999999998887665  357


Q ss_pred             hHHHHHHHHhcc-CCCCEEE--EecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136          180 TDVARVFQITVH-SQVPIIG--LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (493)
Q Consensus       180 ~D~~~l~~~~~~-~~~PlIa--~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~  245 (493)
                      .+..++.+.+++ .+.|+=.  -++.-++..+-+..-..|....=+++..- ..-.||++.+++...++
T Consensus       183 ~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~-g~~agn~~~e~vv~~L~  250 (592)
T PRK09282        183 YAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPL-AFGTSQPPTESMVAALK  250 (592)
T ss_pred             HHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeecccc-CCCcCCHhHHHHHHHHH
Confidence            888888877554 2455432  34444454554444444543332333321 22347888887776665

>PRK05693 short chain dehydrogenase; Provisional

Probab=92.42  E-value=0.29  Score=48.45  Aligned_cols=40  Identities=28%  Similarity=0.375  Sum_probs=35.3

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      |++||.|+ ||.|++++..|.+.|++|+++.|+.++.+.+.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   42 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA   42 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            57899987 88999999999999999999999988776654

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=92.41  E-value=0.37  Score=49.83  Aligned_cols=92  Identities=18%  Similarity=0.098  Sum_probs=63.0

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.||+|.|+|.|..|++++.-|...|+.|.-.+|+..+.+...+.... .            .+.++-| .+.++++=
T Consensus       158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~------------~d~~~~~-~~sD~ivv  223 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-F------------VDIEELL-ANSDVIVV  223 (336)
T ss_pred             ccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-c------------cCHHHHH-hhCCEEEE
Confidence            56789999999999999999999999998888888987766555443332 1            2233334 44556665


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEee
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVM  485 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~  485 (493)
                      +-||.-+-..+   +|..+.-.||..+|.
T Consensus       224 ~~pLt~~T~~l---iNk~~~~~mk~g~vl  249 (336)
T KOG0069|consen  224 NCPLTKETRHL---INKKFIEKMKDGAVL  249 (336)
T ss_pred             ecCCCHHHHHH---hhHHHHHhcCCCeEE
Confidence            66666555544   466666666665553

>PRK06482 short chain dehydrogenase; Provisional

Probab=92.41  E-value=0.31  Score=48.16  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=37.0

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      |++||.|+ ||.|++++..|.+.|++|+++.|+.++.+.+.+.
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~   45 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKAR   45 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence            67999996 8899999999999999999999998887777554

>PRK06153 hypothetical protein; Provisional

Probab=92.40  E-value=0.13  Score=54.13  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=30.6

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R  412 (493)
                      +++++|+|+|+||.|..++..|++.|+ +|++++-
T Consensus       174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~  208 (393)
T PRK06153        174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG  208 (393)
T ss_pred             HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence            457899999999999999999999999 9998663

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.40  E-value=0.29  Score=47.81  Aligned_cols=35  Identities=31%  Similarity=0.445  Sum_probs=31.6

Q ss_pred             cCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCC
Q 011136          379 LAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       379 l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~  413 (493)
                      +++|+++|.|++   |.|++++..|++.|++|+++.|+
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~   40 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS   40 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence            467899999994   79999999999999999999887

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=92.37  E-value=3.5  Score=40.85  Aligned_cols=121  Identities=18%  Similarity=0.262  Sum_probs=75.1

Q ss_pred             HHHHHHhhCC-CcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccC
Q 011136           68 NIKTLIKESP-VPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNY  146 (493)
Q Consensus        68 ~l~~l~~~~~-~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f  146 (493)
                      .++.+++..+ .|+|.-.-+    |... +.+.-.+..+..++.|++.|-||-..  +..+.+...+..+.-||+. -+.
T Consensus        63 ~~~~I~r~~~~~pviaD~~~----G~g~-~~~~~~~~~~~l~~aGa~gv~iED~~--~~~~~i~ai~~a~i~ViaR-td~  134 (240)
T cd06556          63 HVRAVRRGAPLALIVADLPF----GAYG-APTAAFELAKTFMRAGAAGVKIEGGE--WHIETLQMLTAAAVPVIAH-TGL  134 (240)
T ss_pred             HHHHHHhhCCCCCEEEeCCC----CCCc-CHHHHHHHHHHHHHcCCcEEEEcCcH--HHHHHHHHHHHcCCeEEEE-eCC
Confidence            3555666664 699987743    5433 54566677788888999999999753  2333333322334555542 222


Q ss_pred             CCCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEecCC
Q 011136          147 QYTP-----------------SVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGE  203 (493)
Q Consensus       147 ~~tp-----------------~~~el~~~~~~~~~~gaDIvKia~~a~s~~D~~~l~~~~~~~~~PlIa~~MG~  203 (493)
                        +|                 ..++.++......+.|||.+=+-..  +.++..   ++.+..+.|++.+++|.
T Consensus       135 --~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~~e~~~---~i~~~~~~P~~~~gag~  201 (240)
T cd06556         135 --TPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--PVELAK---QITEALAIPLAGIGAGS  201 (240)
T ss_pred             --chhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHH---HHHHhCCCCEEEEecCc
Confidence              22                 2345566666667899999766533  555554   44555688999998887

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>PRK07985 oxidoreductase; Provisional

Probab=92.32  E-value=0.3  Score=49.21  Aligned_cols=47  Identities=23%  Similarity=0.345  Sum_probs=37.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC--hHHHHHHHHHh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT--YGESLTFLRLM  424 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~--~~~a~~la~~~  424 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++..|+  .++.+++.+.+
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~   95 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKII   95 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHH
Confidence            367899999998 789999999999999999888764  34555665544

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=92.26  E-value=2.2  Score=41.70  Aligned_cols=144  Identities=22%  Similarity=0.135  Sum_probs=87.5

Q ss_pred             HHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH-----HHHHHHHHHhC
Q 011136           37 KMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER-----VDVLRLAMELG  111 (493)
Q Consensus        37 e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~-----~~ll~~~l~~~  111 (493)
                      +....++++.+.++++|=+.--++.      ..+.....++..+-+.++- +.|+.   ..+.+     ..-.+.+++.|
T Consensus        20 ~~~~~~~~a~~~~~~av~v~p~~~~------~~~~~~~~~~~~~~~vi~f-p~g~~---~~~~k~~~~~~~~ve~A~~~G   89 (236)
T PF01791_consen   20 DIKKLCREAIEYGFDAVCVTPGYVK------PAAELLAGSGVKVGLVIGF-PFGTS---TTEPKGYDQIVAEVEEAIRLG   89 (236)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEGGGHH------HHHHHSTTSTSEEEEEEST-TTSSS---THHHHTCEEEHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHhCCCEEEECHHHHH------HHHHHhhccccccceEEEe-CCCCC---ccccccccchHHHHHHHHHcC
Confidence            6777777887889999877654432      2333333222223333432 23332   33455     67788999999


Q ss_pred             CcEEEEEccc---cc-------chhHHHh-hcCCCCcEEEEEcccCCCCCCHH---------HHHHHHHHHHHcCCCEEE
Q 011136          112 ADYIDVELQV---AR-------EFNDSIR-GKKPEKCKVIVSSHNYQYTPSVE---------DLSNLVARIQASGADIVK  171 (493)
Q Consensus       112 ~dyIDIEl~~---~~-------~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~---------el~~~~~~~~~~gaDIvK  171 (493)
                      +|-||+=++.   ..       +.+.++. ..++.+.++|+- -.    |..+         .+....+-+.++|+|++|
T Consensus        90 Ad~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~----l~~~~~~~~~~~~~I~~a~ria~e~GaD~vK  164 (236)
T PF01791_consen   90 ADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PY----LRGEEVADEKKPDLIARAARIAAELGADFVK  164 (236)
T ss_dssp             -SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-EC----ECHHHBSSTTHHHHHHHHHHHHHHTT-SEEE
T ss_pred             CceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-Ee----cCchhhcccccHHHHHHHHHHHHHhCCCEEE
Confidence            9999997766   21       1233333 345788999986 32    2222         256666667889999999


Q ss_pred             EEee---cCCHhHHHHHHHHhccCCCC
Q 011136          172 FATT---ALDITDVARVFQITVHSQVP  195 (493)
Q Consensus       172 ia~~---a~s~~D~~~l~~~~~~~~~P  195 (493)
                      ..+.   ..+.+|+..+.+.......|
T Consensus       165 t~tg~~~~~t~~~~~~~~~~~~~~~~p  191 (236)
T PF01791_consen  165 TSTGKPVGATPEDVELMRKAVEAAPVP  191 (236)
T ss_dssp             EE-SSSSCSHHHHHHHHHHHHHTHSST
T ss_pred             ecCCccccccHHHHHHHHHHHHhcCCC
Confidence            9887   45567777777777766777

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=92.25  E-value=0.28  Score=47.97  Aligned_cols=40  Identities=30%  Similarity=0.503  Sum_probs=36.9

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      ++++|+|+|-.|+.+|..|.+.|.+|+++.++.+++++.+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~   40 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFL   40 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHh
Confidence            4689999999999999999999999999999999988843

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.25  E-value=0.17  Score=57.12  Aligned_cols=35  Identities=34%  Similarity=0.383  Sum_probs=32.6

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .+++|+|||+|.+|.++++.|++.|++|+|+.|..
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~  360 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP  360 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            58899999999999999999999999999999863

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=92.21  E-value=0.19  Score=50.79  Aligned_cols=33  Identities=33%  Similarity=0.398  Sum_probs=28.3

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      .|+|||+|.+|.++|.+|++.|+++.|+.|...
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~   35 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence            589999999999999999999999999998543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08263 short chain dehydrogenase; Provisional

Probab=92.18  E-value=0.36  Score=47.83  Aligned_cols=44  Identities=27%  Similarity=0.389  Sum_probs=38.0

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +|+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+.+.+.+
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~   47 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY   47 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc
Confidence            578999986 88999999999999999999999988877766543

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=92.17  E-value=0.63  Score=49.30  Aligned_cols=121  Identities=24%  Similarity=0.368  Sum_probs=74.2

Q ss_pred             eecCCccccccHHHHHHHHHHcCCCceeecccc---ccHHHHHHHhcCCCCCeEEEc---cCchHHHhhhhhhhcHHHHH
Q 011136          258 IIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV---DDIAKFFQTYSSNDFAGFSCT---IPHKEAAVKCCDEVDTVAKS  331 (493)
Q Consensus       258 viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~---~~l~~~~~~l~~~~~~G~~VT---~P~K~~v~~~~d~~~~~A~~  331 (493)
                      +-|-||.--+. .+|.++   -|++..=..+++   +.+.++++.+ .+.|.|.|+-   -|.+..+-..+.+.      
T Consensus        97 ~ag~pVmeGKa-~Lfk~f---aGid~~pI~ld~~~~~ei~~~Vkal-~p~FgginLedi~ap~cf~ie~~lr~~------  165 (432)
T COG0281          97 LAGKPVMEGKA-VLFKAF---AGIDVLPIELDVGTNNEIIEFVKAL-EPTFGGINLEDIDAPRCFAIEERLRYR------  165 (432)
T ss_pred             ccCcchhhhHH-HHHHHh---cCCCceeeEeeCCChHHHHHHHHHh-hhcCCCcceeecccchhhHHHHHHhhc------
Confidence            34455555554 222321   356744444444   3566666666 5789999863   35444443333221      


Q ss_pred             hcceeeEEEeccCCeEEEEecc--H------HHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhC
Q 011136          332 IGAVNCIIRRQSDGKLFGYNTD--Y------VGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAK  403 (493)
Q Consensus       332 igAvNti~~~~~~g~l~G~NTD--~------~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~  403 (493)
                         .          .+--+|-|  |      -|++++++-           .+..++..++++.|||.+|-+++..|...
T Consensus       166 ---~----------~IPvFhDDqqGTaiv~lA~llnalk~-----------~gk~l~d~kiv~~GAGAAgiaia~~l~~~  221 (432)
T COG0281         166 ---M----------NIPVFHDDQQGTAIVTLAALLNALKL-----------TGKKLKDQKIVINGAGAAGIAIADLLVAA  221 (432)
T ss_pred             ---C----------CCCcccccccHHHHHHHHHHHHHHHH-----------hCCCccceEEEEeCCcHHHHHHHHHHHHh
Confidence               1          13334444  3      334455542           23678889999999999999999999999


Q ss_pred             CC---eEEEEeCC
Q 011136          404 GA---RVVIANRT  413 (493)
Q Consensus       404 g~---~i~v~~R~  413 (493)
                      |+   +|++++|.
T Consensus       222 g~~~~~i~~~D~~  234 (432)
T COG0281         222 GVKEENIFVVDRK  234 (432)
T ss_pred             CCCcccEEEEecC
Confidence            97   79999873

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=92.17  E-value=0.18  Score=49.70  Aligned_cols=30  Identities=23%  Similarity=0.407  Sum_probs=27.7

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~-~i~v~~R  412 (493)
                      +|+|+|+||.|..++..|+..|+ +++|++.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~   31 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDM   31 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            48999999999999999999999 9999775

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=92.17  E-value=0.8  Score=42.50  Aligned_cols=53  Identities=32%  Similarity=0.335  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      ..|++..|+..           +.+++||+++|+|.+. .|+-++.-|.+.|+.|+++...-...
T Consensus        20 p~aii~lL~~~-----------~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l   73 (160)
T PF02882_consen   20 PLAIIELLEYY-----------GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNL   73 (160)
T ss_dssp             HHHHHHHHHHT-----------T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSH
T ss_pred             HHHHHHHHHhc-----------CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcc
Confidence            35667777652           2578999999999997 99999999999999999988764333

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK06483 dihydromonapterin reductase; Provisional

Probab=92.14  E-value=0.33  Score=46.71  Aligned_cols=37  Identities=30%  Similarity=0.363  Sum_probs=32.7

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      +|++||.|+ ||.|++++..|++.|++|++++|+.++.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~   39 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPA   39 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhH
Confidence            478999997 7799999999999999999999987653

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=92.12  E-value=0.31  Score=50.34  Aligned_cols=88  Identities=19%  Similarity=0.069  Sum_probs=56.0

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      .++.||++-|||.|..|++++.-++-.|++|..++|...  .+..+.++..+.            ++++-+ .+.++++-
T Consensus       142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~~~~y~------------~l~ell-~~sDii~l  206 (324)
T COG1052         142 FDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKELGARYV------------DLDELL-AESDIISL  206 (324)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhcCceec------------cHHHHH-HhCCEEEE
Confidence            568899999999999999999999977889999999864  222222222221            122222 44566666


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccce
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSY  482 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~  482 (493)
                      ..|+.-....+   +|......+|..
T Consensus       207 ~~Plt~~T~hL---in~~~l~~mk~g  229 (324)
T COG1052         207 HCPLTPETRHL---INAEELAKMKPG  229 (324)
T ss_pred             eCCCChHHhhh---cCHHHHHhCCCC
Confidence            66666654444   344444444443

>PRK08177 short chain dehydrogenase; Provisional

Probab=92.10  E-value=0.27  Score=47.10  Aligned_cols=40  Identities=23%  Similarity=0.277  Sum_probs=34.8

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      ++++|.|+ ||.|++++..|++.|++|+++.|+.++.+.+.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~   42 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ   42 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH
Confidence            57899985 88999999999999999999999988766553

>PRK12743 oxidoreductase; Provisional

Probab=92.09  E-value=0.38  Score=47.06  Aligned_cols=45  Identities=18%  Similarity=0.138  Sum_probs=36.3

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEe-CChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~-R~~~~a~~la~~~~  425 (493)
                      +|+++|.|+ ||.|++++..|++.|++|+++. |+.++++.+.+.+.
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~   48 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVR   48 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHH
Confidence            578999998 7799999999999999887764 56777777666543

>PRK09135 pteridine reductase; Provisional

Probab=92.09  E-value=0.4  Score=46.13  Aligned_cols=45  Identities=24%  Similarity=0.296  Sum_probs=36.3

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-YGESLTFLRLM  424 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~-~~~a~~la~~~  424 (493)
                      .++++||.|+ |+.|+.++..|.+.|++|+++.|+ .++.+.+.+.+
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~   51 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAEL   51 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4688999998 779999999999999999988885 45555555544

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=92.07  E-value=2.7  Score=42.14  Aligned_cols=126  Identities=20%  Similarity=0.227  Sum_probs=75.9

Q ss_pred             HHHHHHHHhhhhcCCCEEEEEecCCCCCCc--hhHHHHHH---hhCCCcEEEEeccCCCCCCC--CCCHHHHHHHHHHHH
Q 011136           36 DKMVVDMGKANASGADLVEIRLDGLKNFNP--RENIKTLI---KESPVPTLFTYRPIWEGGQY--DGDENERVDVLRLAM  108 (493)
Q Consensus        36 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~--~~~l~~l~---~~~~~PiI~T~R~~~eGG~~--~~~~~~~~~ll~~~l  108 (493)
                      +....+++++++.|+|.+-+|+..-.....  .+.++.+.   +...+|+++-...  .|...  ..+.+......+.+.
T Consensus        93 ~~~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~--~g~~~e~~~~~~~i~~a~~~a~  170 (267)
T PRK07226         93 KVLVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYP--RGPGIKNEYDPEVVAHAARVAA  170 (267)
T ss_pred             ceeeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEec--CCCccCCCccHHHHHHHHHHHH
Confidence            445666778888999999999865432111  22333444   3357898875432  22211  113344455567888


Q ss_pred             HhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCC-CHHHHHHHHHHHHHcCCC
Q 011136          109 ELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP-SVEDLSNLVARIQASGAD  168 (493)
Q Consensus       109 ~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp-~~~el~~~~~~~~~~gaD  168 (493)
                      +.|+|||-..+.-+.+.++++...  ...+|++|=   .-+. +.++..+.+.++.+.||+
T Consensus       171 e~GAD~vKt~~~~~~~~l~~~~~~--~~ipV~a~G---Gi~~~~~~~~l~~v~~~~~aGA~  226 (267)
T PRK07226        171 ELGADIVKTNYTGDPESFREVVEG--CPVPVVIAG---GPKTDTDREFLEMVRDAMEAGAA  226 (267)
T ss_pred             HHCCCEEeeCCCCCHHHHHHHHHh--CCCCEEEEe---CCCCCCHHHHHHHHHHHHHcCCc
Confidence            899999988754434556666532  235555541   1111 456788888888889987

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.07  E-value=0.98  Score=46.30  Aligned_cols=46  Identities=24%  Similarity=0.247  Sum_probs=38.1

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .|.+++|.|+|+++.+++..++..|++|+++.++.+|. ++++.++.
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~-~~a~~~Ga  210 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAAR-RLALALGA  210 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHHhCC
Confidence            37899999999999998887788899888889988874 56676664

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=92.03  E-value=6.3  Score=39.53  Aligned_cols=149  Identities=16%  Similarity=0.153  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc-----------hhHHHHHHhhC--CCcEEEEeccCCCCCCCCCCHHHH
Q 011136           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNP-----------RENIKTLIKES--PVPTLFTYRPIWEGGQYDGDENER  100 (493)
Q Consensus        34 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~-----------~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~  100 (493)
                      +.++.+.-++.+.+.|+|.||+   -+.....           .+.++.+++..  +.++...+|...          .-
T Consensus        18 ~~~~~~~ia~~L~~~GVd~IEv---G~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~   84 (266)
T cd07944          18 GDEFVKAIYRALAAAGIDYVEI---GYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN----------DD   84 (266)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEe---ecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC----------CC


Q ss_pred             HHHHHHHHHhCCcE--EEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE--eec
Q 011136          101 VDVLRLAMELGADY--IDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA--TTA  176 (493)
Q Consensus       101 ~~ll~~~l~~~~dy--IDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia--~~a  176 (493)
                      .+.++.+.+.|+++  |-+..+.-+...+.+..++..+.+|.++.-+...++ .+.+.+.++++.+.|+|.+-++  +=.
T Consensus        85 ~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~-~~~~~~~~~~~~~~g~~~i~l~DT~G~  163 (266)
T cd07944          85 IDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYS-DEELLELLELVNEIKPDVFYIVDSFGS  163 (266)
T ss_pred             HHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCC-HHHHHHHHHHHHhCCCCEEEEecCCCC


Q ss_pred             CCHhHHHHHHHHhccC-C--CCE
Q 011136          177 LDITDVARVFQITVHS-Q--VPI  196 (493)
Q Consensus       177 ~s~~D~~~l~~~~~~~-~--~Pl  196 (493)
                      -+|+++.++.+.+.+. +  .|+
T Consensus       164 ~~P~~v~~lv~~l~~~~~~~~~i  186 (266)
T cd07944         164 MYPEDIKRIISLLRSNLDKDIKL  186 (266)
T ss_pred             CCHHHHHHHHHHHHHhcCCCceE

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=92.00  E-value=5.1  Score=41.52  Aligned_cols=91  Identities=14%  Similarity=0.190  Sum_probs=63.4

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCC----------C--Cc---hhHHHHHHhhCCCcEEEEeccCCC
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN----------F--NP---RENIKTLIKESPVPTLFTYRPIWE   89 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~----------~--~~---~~~l~~l~~~~~~PiI~T~R~~~e   89 (493)
                      -+.+.|.+++.+++..-++.+.+.|+|.|||=...-..          +  ++   .+.++.+++....|+-+-+|-..+
T Consensus        66 p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~  145 (333)
T PRK11815         66 PVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGID  145 (333)
T ss_pred             cEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeC
Confidence            36689999999999998888878899999997664210          0  11   134555655567888777775333


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCcEEEEE
Q 011136           90 GGQYDGDENERVDVLRLAMELGADYIDVE  118 (493)
Q Consensus        90 GG~~~~~~~~~~~ll~~~l~~~~dyIDIE  118 (493)
                      +.   .+.++..++.+.+.+.|++++.|-
T Consensus       146 ~~---~t~~~~~~~~~~l~~aG~d~i~vh  171 (333)
T PRK11815        146 DQ---DSYEFLCDFVDTVAEAGCDTFIVH  171 (333)
T ss_pred             CC---cCHHHHHHHHHHHHHhCCCEEEEc
Confidence            32   233456677778888899999875

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=91.96  E-value=0.18  Score=53.54  Aligned_cols=34  Identities=32%  Similarity=0.388  Sum_probs=30.7

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R  412 (493)
                      +++.+|+|+|+||.|..++..|+..|+ +|+|++.
T Consensus        40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~   74 (392)
T PRK07878         40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEF   74 (392)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            456799999999999999999999999 9998774

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=91.96  E-value=2.2  Score=42.73  Aligned_cols=154  Identities=17%  Similarity=0.115  Sum_probs=85.4

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHh--hCCCcEEEEeccC-CCCCCCCCCHHHHHHHHHHHH
Q 011136           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK--ESPVPTLFTYRPI-WEGGQYDGDENERVDVLRLAM  108 (493)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~--~~~~PiI~T~R~~-~eGG~~~~~~~~~~~ll~~~l  108 (493)
                      ..+++++..-++++.+.++|+|=+---+         +....+  ..+.|+++++=+. .-| .. +..+....-.+.++
T Consensus        35 ~~~~~d~~~~~~~a~~~~~~av~v~~~~---------~~~~~~~~~~~~~l~~~i~~~~~~~-~~-~~~~~~~~~ve~A~  103 (267)
T PRK07226         35 IDGLVDIRDTVNKVAEGGADAVLMHKGL---------ARHGHRGYGRDVGLIVHLSASTSLS-PD-PNDKVLVGTVEEAI  103 (267)
T ss_pred             CcCcCCHHHHHHHHHhcCCCEEEeCHhH---------HhhhccccCCCCcEEEEEcCCCCCC-CC-CCcceeeecHHHHH
Confidence            3466677777777777788888664322         221111  2467888765421 111 00 11134555677899


Q ss_pred             HhCCcEEEEEccccc----c---hhHHHhh-cCCCCcEEEEE-ccc---CCCCCCHHHHHHHHHHHHHcCCCEEEEEeec
Q 011136          109 ELGADYIDVELQVAR----E---FNDSIRG-KKPEKCKVIVS-SHN---YQYTPSVEDLSNLVARIQASGADIVKFATTA  176 (493)
Q Consensus       109 ~~~~dyIDIEl~~~~----~---~~~~l~~-~~~~~~kiI~S-~H~---f~~tp~~~el~~~~~~~~~~gaDIvKia~~a  176 (493)
                      +.|++.+|+=+....    +   .+.++.. .++.+..+|+. |-+   .+...+.+++....+.+.+.|||++|.-...
T Consensus       104 ~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~  183 (267)
T PRK07226        104 KLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG  183 (267)
T ss_pred             HcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC
Confidence            999999998765432    1   2233332 23456666663 211   1122233456666677888999999997432


Q ss_pred             CCHhHHHHHHHHhccCCCCEEEEe
Q 011136          177 LDITDVARVFQITVHSQVPIIGLV  200 (493)
Q Consensus       177 ~s~~D~~~l~~~~~~~~~PlIa~~  200 (493)
                          |...+-+.....++|+.+.+
T Consensus       184 ----~~~~l~~~~~~~~ipV~a~G  203 (267)
T PRK07226        184 ----DPESFREVVEGCPVPVVIAG  203 (267)
T ss_pred             ----CHHHHHHHHHhCCCCEEEEe
Confidence                33333344444568886664

>PRK06701 short chain dehydrogenase; Provisional

Probab=91.95  E-value=0.41  Score=48.20  Aligned_cols=48  Identities=23%  Similarity=0.311  Sum_probs=38.1

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG-ESLTFLRLM  424 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~-~a~~la~~~  424 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.+ ..+.+.+.+
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~   91 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRV   91 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHH
Confidence            3567899999997 77999999999999999999999753 344444444

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=91.87  E-value=0.28  Score=50.10  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=36.0

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .+++|+|+|++|.-+++.|++.|++|+++.|..++.+.+.+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~   43 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ   43 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh
Confidence            36999999999999999999999999999998777766654

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=91.83  E-value=0.37  Score=51.38  Aligned_cols=42  Identities=33%  Similarity=0.421  Sum_probs=36.4

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+.
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~  217 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITL  217 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            457899999998 889999999999999999999998766543

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=91.83  E-value=0.4  Score=46.29  Aligned_cols=45  Identities=20%  Similarity=0.353  Sum_probs=34.6

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEE-EeCChHHHHHHHHHh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYGESLTFLRLM  424 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v-~~R~~~~a~~la~~~  424 (493)
                      ++|.++|.|+ ||.|++++..|++.|+++++ ..|+..+.++..+.+
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~   48 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQ   48 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHH
Confidence            4688999987 88999999999999997766 455555555555443

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=91.83  E-value=4.1  Score=40.55  Aligned_cols=139  Identities=19%  Similarity=0.207  Sum_probs=82.5

Q ss_pred             CcEEEEeecC--CC-----HHHHHHHHHhhhhcCCCEEEEEecCCCCCCchh---HHHHHH---hhCCCcEEEEeccCCC
Q 011136           23 PTLICVPIMG--ES-----VDKMVVDMGKANASGADLVEIRLDGLKNFNPRE---NIKTLI---KESPVPTLFTYRPIWE   89 (493)
Q Consensus        23 ~~~Icv~l~~--~~-----~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~---~l~~l~---~~~~~PiI~T~R~~~e   89 (493)
                      ...+|+++..  +.     .+.....++++++.|+|.|-+|...... ...+   .++.+.   +..++|+++-.-  ..
T Consensus        70 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~-~~~~~~~~~~~i~~~~~~~g~~liv~~~--~~  146 (258)
T TIGR01949        70 DVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSD-TEWEQIRDLGMIAEICDDWGVPLLAMMY--PR  146 (258)
T ss_pred             CCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCc-hHHHHHHHHHHHHHHHHHcCCCEEEEEe--cc
Confidence            3446777722  21     1134556778888999999999875432 1112   233333   335789887322  23


Q ss_pred             CCCCC-CCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC
Q 011136           90 GGQYD-GDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD  168 (493)
Q Consensus        90 GG~~~-~~~~~~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaD  168 (493)
                      |.... .+.+...+..+.+.+.|+|||=+....+.+.++++...  ...+|+++=-  -.+.+.++..+.++++.+.||+
T Consensus       147 Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~~~~~~l~~~~~~--~~iPVva~GG--i~~~~~~~~~~~i~~~~~aGa~  222 (258)
T TIGR01949       147 GPHIDDRDPELVAHAARLGAELGADIVKTPYTGDIDSFRDVVKG--CPAPVVVAGG--PKTNSDREFLQMIKDAMEAGAA  222 (258)
T ss_pred             CcccccccHHHHHHHHHHHHHHCCCEEeccCCCCHHHHHHHHHh--CCCcEEEecC--CCCCCHHHHHHHHHHHHHcCCc
Confidence            32211 23333334457778899999998866445666666542  3455655411  1222467888999999999998

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=91.80  E-value=1.8  Score=45.23  Aligned_cols=90  Identities=18%  Similarity=0.229  Sum_probs=54.5

Q ss_pred             ecCCCHHHHHHHHH----hhhhcCCCEEEEEecC-------CCC---C---------Cc-----hhHHHHHHhhCC----
Q 011136           30 IMGESVDKMVVDMG----KANASGADLVEIRLDG-------LKN---F---------NP-----RENIKTLIKESP----   77 (493)
Q Consensus        30 l~~~~~~e~~~~~~----~~~~~~aD~vElRlD~-------l~~---~---------~~-----~~~l~~l~~~~~----   77 (493)
                      ++..+++++.++..    ++.+.|.|.|||=.-.       |..   .         ++     .+.++.+|+...    
T Consensus       134 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~  213 (353)
T cd04735         134 LTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHAD  213 (353)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccC
Confidence            45555565555533    4456899999996532       111   0         11     134555666554    


Q ss_pred             CcEEEEeccCCCCCC-CCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 011136           78 VPTLFTYRPIWEGGQ-YDGDENERVDVLRLAMELGADYIDVEL  119 (493)
Q Consensus        78 ~PiI~T~R~~~eGG~-~~~~~~~~~~ll~~~l~~~~dyIDIEl  119 (493)
                      .++.+-+|-..+... ...+.++..++++.+.+.|+|||+|-.
T Consensus       214 ~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~  256 (353)
T cd04735         214 KDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISL  256 (353)
T ss_pred             CCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEecc
Confidence            567788886532211 112457778888888889999999854

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=91.79  E-value=3.5  Score=38.23  Aligned_cols=107  Identities=24%  Similarity=0.275  Sum_probs=61.6

Q ss_pred             HHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHh---hCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 011136           36 DKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK---ESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA  112 (493)
Q Consensus        36 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~  112 (493)
                      .+....++++.+.|++.|++|.-........+.++.+++   ..+.++++.-               +   ++.+.+.|+
T Consensus        12 ~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~---------------~---~~~a~~~g~   73 (196)
T cd00564          12 EDLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIIND---------------R---VDLALAVGA   73 (196)
T ss_pred             chHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeC---------------h---HHHHHHcCC
Confidence            456667777778899999999743321111122333332   2356766421               1   345677899


Q ss_pred             cEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          113 DYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       113 dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      +.+-++.....  ...+...+..+.++-+|.|    ++      +...++...|+|++.+
T Consensus        74 ~~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~----t~------~~~~~~~~~g~d~i~~  121 (196)
T cd00564          74 DGVHLGQDDLP--VAEARALLGPDLIIGVSTH----SL------EEALRAEELGADYVGF  121 (196)
T ss_pred             CEEecCcccCC--HHHHHHHcCCCCEEEeeCC----CH------HHHHHHhhcCCCEEEE
Confidence            98877753221  1222222344677888877    22      2345566789999876

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=91.79  E-value=4.6  Score=38.65  Aligned_cols=110  Identities=15%  Similarity=0.198  Sum_probs=67.0

Q ss_pred             cEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe---cCCCCCC-chhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHH
Q 011136           24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRL---DGLKNFN-PRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENE   99 (493)
Q Consensus        24 ~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl---D~l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~   99 (493)
                      ..|.++|...|......+++.+.+.|+|+|++|+   .+.+++. ..+.++.+++..+.|+-+++...        +.+.
T Consensus         4 ~~~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~--------d~~~   75 (220)
T PRK05581          4 VLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE--------NPDR   75 (220)
T ss_pred             cEEEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--------CHHH
Confidence            4588999999999999999999999999999986   2222221 13456666654445554555542        2333


Q ss_pred             HHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcc
Q 011136          100 RVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSH  144 (493)
Q Consensus       100 ~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H  144 (493)
                      +.   +.+.+.|+++|-+=....+.....+...+..+.+++.+.+
T Consensus        76 ~i---~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~  117 (220)
T PRK05581         76 YV---PDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLN  117 (220)
T ss_pred             HH---HHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEEC
Confidence            44   3445778888655433332222222222345677777764

>PRK06128 oxidoreductase; Provisional

Probab=91.79  E-value=0.38  Score=48.47  Aligned_cols=48  Identities=23%  Similarity=0.405  Sum_probs=36.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH--HHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG--ESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~--~a~~la~~~~  425 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++..|+.+  +.+++.+.+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~  102 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQ  102 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHH
Confidence            356899999997 88999999999999999888776533  3445554443

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=91.78  E-value=0.2  Score=55.96  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=31.1

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R  412 (493)
                      +++.+|+|+|+||.|..++..|+..|+ +|++++.
T Consensus       336 L~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~  370 (664)
T TIGR01381       336 YSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN  370 (664)
T ss_pred             HhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence            567899999999999999999999999 9998773

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK06953 short chain dehydrogenase; Provisional

Probab=91.77  E-value=0.34  Score=46.26  Aligned_cols=41  Identities=24%  Similarity=0.404  Sum_probs=35.5

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++..
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~   43 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQA   43 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHh
Confidence            47889985 889999999999999999999999888777653

>PRK14031 glutamate dehydrogenase; Provisional

Probab=91.74  E-value=1  Score=48.56  Aligned_cols=51  Identities=25%  Similarity=0.337  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEE-Ee
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVI-AN  411 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v-~~  411 (493)
                      +.|...+++..+..       .+.+++|++|+|.|.|-+|..++..|.+.|++|+. .+
T Consensus       208 g~Gv~~~~~~~~~~-------~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD  259 (444)
T PRK14031        208 GYGNIYFLMEMLKT-------KGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD  259 (444)
T ss_pred             HHHHHHHHHHHHHh-------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            78888887776543       13578999999999999999999999999997765 44

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.73  E-value=2.1  Score=43.73  Aligned_cols=140  Identities=20%  Similarity=0.317  Sum_probs=83.1

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHH--hhhhhhhcH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDT  327 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~  327 (493)
                      .-++| +|-+++.- ..-...++++|++.....++-    +++.+.++.+ .+++..|.-|-+|.-..+  -..++.+++
T Consensus        38 iI~vg~d~as~~Yv-~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p  116 (297)
T PRK14168         38 TILVGESPASLSYV-TLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDP  116 (297)
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence            34555 33333333 233567889999876554432    4677777777 567899999999963211  111111211


Q ss_pred             HHHHhcceeeEEEeccCCeE-EEE------eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHH
Q 011136          328 VAKSIGAVNCIIRRQSDGKL-FGY------NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYG  399 (493)
Q Consensus       328 ~A~~igAvNti~~~~~~g~l-~G~------NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~  399 (493)
                       .+.+-..+..-    -|++ .|.      -.-..|++.-|+..           +.+++||+|+|+|.+. .|+-++.-
T Consensus       117 -~KDVDGl~~~n----~g~l~~~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~l  180 (297)
T PRK14168        117 -DKDVDGFHPVN----VGRLMIGGDEVKFLPCTPAGIQEMLVRS-----------GVETSGAEVVVVGRSNIVGKPIANM  180 (297)
T ss_pred             -cccccccChhh----HHHHhcCCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcccHHHHHH
Confidence             11122222110    1222 121      11256677766642           2678999999999988 99999999


Q ss_pred             HHhC----CCeEEEEeC
Q 011136          400 AKAK----GARVVIANR  412 (493)
Q Consensus       400 L~~~----g~~i~v~~R  412 (493)
                      |.+.    ++.|+++.+
T Consensus       181 L~~~~~~~~atVtv~hs  197 (297)
T PRK14168        181 MTQKGPGANATVTIVHT  197 (297)
T ss_pred             HHhcccCCCCEEEEecC
Confidence            9887    578998864

>PRK06847 hypothetical protein; Provisional

Probab=91.71  E-value=0.22  Score=51.64  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=31.2

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .++|+|||+|.+|.+++..|++.|++|+|+.|+.
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~   37 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP   37 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            4679999999999999999999999999999864

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.71  E-value=0.42  Score=48.04  Aligned_cols=38  Identities=26%  Similarity=0.295  Sum_probs=34.9

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      +++.|||+|-||.+++..|+..|++|++++++.++.++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~   41 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDR   41 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHH
Confidence            47999999999999999999999999999999988753

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=91.70  E-value=0.48  Score=45.36  Aligned_cols=46  Identities=35%  Similarity=0.471  Sum_probs=35.5

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG-ESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~-~a~~la~~~  424 (493)
                      +++++++|.|+ |+.|++++..|.+.|++|++..|+.+ +.+.+.+.+
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~   50 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEI   50 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHH
Confidence            35789999997 78999999999999999878777654 344444433

>PRK14030 glutamate dehydrogenase; Provisional

Probab=91.66  E-value=1.4  Score=47.36  Aligned_cols=96  Identities=21%  Similarity=0.129  Sum_probs=61.5

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEE--------Ee---CChHHHHHHHH
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVI--------AN---RTYGESLTFLR  422 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v--------~~---R~~~~a~~la~  422 (493)
                      +.|...+++..+..       .+.+++|++|+|-|.|-+|..++..|.+.|++|+.        +|   -+.++...|.+
T Consensus       208 g~Gv~~~~~~~~~~-------~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~  280 (445)
T PRK14030        208 GFGALYFVHQMLET-------KGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLE  280 (445)
T ss_pred             HHHHHHHHHHHHHH-------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHH
Confidence            77887777765543       13578999999999999999999999999998776        67   55655433332


Q ss_pred             Hhhhhh-h---cccccceEEEEeecccccCCceEEEEec
Q 011136          423 LMSWLL-L---NTLLFDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       423 ~~~~~~-~---~~~~~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                      .-.... .   ....++....+ +.++.|..+.+|++||
T Consensus       281 ~k~~~~~~~~~~~~~~~ga~~i-~~~~~~~~~cDVliPc  318 (445)
T PRK14030        281 LRASGNDIVAPYAEKFPGSTFF-AGKKPWEQKVDIALPC  318 (445)
T ss_pred             HHHhcCccHHHHHhcCCCCEEc-CCccceeccccEEeec
Confidence            211100 0   00011122222 3456788888999854

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=91.66  E-value=14  Score=41.45  Aligned_cols=226  Identities=13%  Similarity=0.124  Sum_probs=128.4

Q ss_pred             ccccccCCCCCcEE-EEeecCCCHHHHHHHHHhhhhcCCCEEEE----EecC-CC--CCCchhHHHHHHhhC-CCcEEEE
Q 011136           13 KLVSGGMRKNPTLI-CVPIMGESVDKMVVDMGKANASGADLVEI----RLDG-LK--NFNPRENIKTLIKES-PVPTLFT   83 (493)
Q Consensus        13 ~~~~~~~~~~~~~I-cv~l~~~~~~e~~~~~~~~~~~~aD~vEl----RlD~-l~--~~~~~~~l~~l~~~~-~~PiI~T   83 (493)
                      +|..-++++..--+ ++.+   +.++.+.-++.+.+.|.+.+|.    ..|- +.  .-++.+.++.+++.. +.|+-.-
T Consensus         6 ~i~DtTLRDG~Qs~~~tr~---~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml   82 (593)
T PRK14040          6 AITDVVLRDAHQSLFATRL---RLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQML   82 (593)
T ss_pred             EEEECCccccccccccccc---CHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEE
Confidence            34444555443332 4333   3445555555555679999999    2442 11  224566788777654 5777666


Q ss_pred             eccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc-c-hhHHHhhcCCCCcEE--EEEcccCCCCC--CHHHHHH
Q 011136           84 YRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR-E-FNDSIRGKKPEKCKV--IVSSHNYQYTP--SVEDLSN  157 (493)
Q Consensus        84 ~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~-~-~~~~l~~~~~~~~ki--I~S~H~f~~tp--~~~el~~  157 (493)
                      +|..+==|-.+-+++...+.++.+.+.|++++-|=....+ + ....+..+++.+..+  -++|-   ..|  +.+.+.+
T Consensus        83 ~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt---~~p~~~~~~~~~  159 (593)
T PRK14040         83 LRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYT---TSPVHTLQTWVD  159 (593)
T ss_pred             ecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEe---eCCccCHHHHHH
Confidence            7743333433445666777899999999999888644332 1 112233333344443  23432   233  4567899


Q ss_pred             HHHHHHHcCCCEEEEEeec--CCHhHHHHHHHHhcc-CCCCEEEEe--cCCcchhhhhhccccCCcccccccCCCcCCCC
Q 011136          158 LVARIQASGADIVKFATTA--LDITDVARVFQITVH-SQVPIIGLV--MGERGLISRILCAKFGGFLTFGTLENGIVSAP  232 (493)
Q Consensus       158 ~~~~~~~~gaDIvKia~~a--~s~~D~~~l~~~~~~-~~~PlIa~~--MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAP  232 (493)
                      ..+++.+.|||.+-|+=|+  -+++++.++.+.+++ .+.|+=.-+  .--++..+-+..-.-|....=+++..- ....
T Consensus       160 ~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~gl-G~~~  238 (593)
T PRK14040        160 LAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSM-SMTY  238 (593)
T ss_pred             HHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccc-cccc
Confidence            9999999999998888665  457888888876554 355554332  222333333333333433322333221 2245


Q ss_pred             CCCCHHhHHHHhh
Q 011136          233 GQPTIKDLLDLYN  245 (493)
Q Consensus       233 GQ~~i~~l~~~~~  245 (493)
                      ||++++++...++
T Consensus       239 Gn~~le~vv~~L~  251 (593)
T PRK14040        239 GHSATETLVATLE  251 (593)
T ss_pred             cchhHHHHHHHHH
Confidence            8888888776665

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.65  E-value=0.43  Score=46.79  Aligned_cols=35  Identities=29%  Similarity=0.412  Sum_probs=30.7

Q ss_pred             ccCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeC
Q 011136          378 ALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANR  412 (493)
Q Consensus       378 ~l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R  412 (493)
                      .+++|+++|.|++   |.|++++..|++.|++|++++|
T Consensus         3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~   40 (256)
T PRK12859          3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYW   40 (256)
T ss_pred             CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEec
Confidence            3678999999994   8999999999999999888754

>PRK08309 short chain dehydrogenase; Provisional

Probab=91.58  E-value=0.52  Score=44.35  Aligned_cols=42  Identities=24%  Similarity=0.131  Sum_probs=36.9

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++|.|+.|.+.+++..|.+.|++|.+..|+.++++.+...+
T Consensus         2 ~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l   43 (177)
T PRK08309          2 HALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKRES   43 (177)
T ss_pred             EEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHh
Confidence            589999989999999999999999999999998888876544

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=91.54  E-value=0.35  Score=48.40  Aligned_cols=69  Identities=6%  Similarity=-0.030  Sum_probs=48.4

Q ss_pred             EEEEEecchHHHHHHHHHHhCC--Ce-EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          383 LFVVIGAGGAGKALAYGAKAKG--AR-VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g--~~-i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      ++.|||.|.+|+.++.++.+.+  ++ +.+++|+.++++++++.++..           +..++++-. ++.++++.++|
T Consensus         3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~-----------~~~~~~ell-~~~DvVvi~a~   70 (265)
T PRK13304          3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAK-----------ACLSIDELV-EDVDLVVECAS   70 (265)
T ss_pred             EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCe-----------eECCHHHHh-cCCCEEEEcCC
Confidence            6899999999999999988764  54 778999999999888754421           223333222 45677777775


Q ss_pred             cCCc
Q 011136          460 LGNH  463 (493)
Q Consensus       460 lG~~  463 (493)
                      -..+
T Consensus        71 ~~~~   74 (265)
T PRK13304         71 VNAV   74 (265)
T ss_pred             hHHH
Confidence            4333

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=91.53  E-value=0.26  Score=53.39  Aligned_cols=36  Identities=33%  Similarity=0.469  Sum_probs=32.5

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      ...++|+|||||.+|.+++.+|.+.|.+++|+.|+.
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~   43 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREK   43 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence            346889999999999999999999999999998864

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.52  E-value=0.44  Score=51.44  Aligned_cols=36  Identities=22%  Similarity=0.233  Sum_probs=33.0

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      +.+++++|+|.|++|++++..|.+.|++|++++++.
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            457899999999999999999999999999999864

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=91.50  E-value=0.68  Score=47.30  Aligned_cols=95  Identities=18%  Similarity=0.086  Sum_probs=70.3

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEee----cccccCCceEEE
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRI----LLFTWHLKFFIA  454 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~----l~~~~~~~~~i~  454 (493)
                      ....+|+|||.|-++.-++.-...+|++|+|.+++.+|.+.|-..|..         +++++.|    +++.. .+++++
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~---------rv~~~~st~~~iee~v-~~aDlv  235 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG---------RVHTLYSTPSNIEEAV-KKADLV  235 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc---------eeEEEEcCHHHHHHHh-hhccEE
Confidence            345679999999999999998888999999999999999988776664         3333332    23444 668999


Q ss_pred             EeccccCCc--hhhHhhhhhHHHHhhccceEeee
Q 011136          455 ANIIHLGNH--LEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       455 ~n~tplG~~--~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      ++|+=++-.  |..++   .+....+-++-|++|
T Consensus       236 IgaVLIpgakaPkLvt---~e~vk~MkpGsVivD  266 (371)
T COG0686         236 IGAVLIPGAKAPKLVT---REMVKQMKPGSVIVD  266 (371)
T ss_pred             EEEEEecCCCCceehh---HHHHHhcCCCcEEEE
Confidence            999877654  55554   333555678888887

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.49  E-value=0.38  Score=52.44  Aligned_cols=40  Identities=28%  Similarity=0.346  Sum_probs=34.9

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESL  418 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~  418 (493)
                      +.+++++|+|.|+.|++++..|...|++|+++++..++.+
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~   49 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALR   49 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            3578999999999999999999999999999998765543

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.43  E-value=0.28  Score=47.09  Aligned_cols=37  Identities=30%  Similarity=0.335  Sum_probs=32.9

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+..
T Consensus         3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~   40 (235)
T PRK06550          3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDK   40 (235)
T ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            56789999997 77999999999999999999999754

>PRK07411 hypothetical protein; Validated

Probab=91.40  E-value=0.22  Score=52.76  Aligned_cols=34  Identities=32%  Similarity=0.455  Sum_probs=30.7

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R  412 (493)
                      ++..+|+|+|+||.|..++..|+..|+ +|++++.
T Consensus        36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~   70 (390)
T PRK07411         36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDF   70 (390)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            456899999999999999999999999 9998764

>cd08230 glucose_DH Glucose dehydrogenase

Probab=91.38  E-value=0.43  Score=49.25  Aligned_cols=47  Identities=21%  Similarity=0.248  Sum_probs=37.7

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHHhhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANR---TYGESLTFLRLMSWL  427 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R---~~~~a~~la~~~~~~  427 (493)
                      .|++|+|+|+|++|..++..++..|++|++++|   +.+|. ++++.++..
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~-~~~~~~Ga~  221 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKA-DIVEELGAT  221 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCCE
Confidence            478999999999999999988889999999998   45554 466666543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=91.36  E-value=10  Score=36.86  Aligned_cols=145  Identities=17%  Similarity=0.140  Sum_probs=86.3

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 011136           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (493)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~  111 (493)
                      ..|.+++..-++++.+.+..+|=+.--+.      +..+..++.+++. +.|+=.-+.|..   +.+.+..-.+.+++.|
T Consensus        14 ~~t~~~i~~lc~~A~~~~~~avcv~p~~v------~~a~~~l~~~~v~-v~tVigFP~G~~---~~~~K~~E~~~Av~~G   83 (211)
T TIGR00126        14 DTTEEDIITLCAQAKTYKFAAVCVNPSYV------PLAKELLKGTEVR-ICTVVGFPLGAS---TTDVKLYETKEAIKYG   83 (211)
T ss_pred             CCCHHHHHHHHHHHHhhCCcEEEeCHHHH------HHHHHHcCCCCCe-EEEEeCCCCCCC---cHHHHHHHHHHHHHcC
Confidence            34566777777776666555544322111      1222223333433 445545555543   3456666678899999


Q ss_pred             CcEEEEEcccc-------cc---hhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE----eec
Q 011136          112 ADYIDVELQVA-------RE---FNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA----TTA  176 (493)
Q Consensus       112 ~dyIDIEl~~~-------~~---~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia----~~a  176 (493)
                      +|-||+=++..       +.   .+.++.. .+..-.|+|+-...    .+.+++....+-+.+.|||++|-.    ...
T Consensus        84 AdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~----L~~~ei~~a~~ia~eaGADfvKTsTGf~~~g  159 (211)
T TIGR00126        84 ADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL----LTDEEIRKACEICIDAGADFVKTSTGFGAGG  159 (211)
T ss_pred             CCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC----CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC
Confidence            99999977654       11   2333332 22233677765432    245678888888889999999987    244


Q ss_pred             CCHhHHHHHHHHhc
Q 011136          177 LDITDVARVFQITV  190 (493)
Q Consensus       177 ~s~~D~~~l~~~~~  190 (493)
                      -+++|+..+.+...
T Consensus       160 at~~dv~~m~~~v~  173 (211)
T TIGR00126       160 ATVEDVRLMRNTVG  173 (211)
T ss_pred             CCHHHHHHHHHHhc
Confidence            67788877776654

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=91.33  E-value=8.2  Score=38.76  Aligned_cols=126  Identities=10%  Similarity=0.168  Sum_probs=72.6

Q ss_pred             EEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch---------------------hHHHHHHhhCCCc-EEEEe
Q 011136           27 CVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR---------------------ENIKTLIKESPVP-TLFTY   84 (493)
Q Consensus        27 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---------------------~~l~~l~~~~~~P-iI~T~   84 (493)
                      =++.-.++.+...+-++.+.+.|+|++||=+=+-+...+.                     +.++.+|+....| ++.|+
T Consensus        20 yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y   99 (263)
T CHL00200         20 FITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTY   99 (263)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEec
Confidence            3467788999999989888899999999977443222110                     1233344444567 33333


Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHH
Q 011136           85 RPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA  164 (493)
Q Consensus        85 R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~  164 (493)
                      =..    .+.-.   .-++++.+.+.|+|                        .+|+  ||.    ..+|..+.++.+++
T Consensus       100 ~N~----i~~~G---~e~F~~~~~~aGvd------------------------gvii--pDL----P~ee~~~~~~~~~~  142 (263)
T CHL00200        100 YNP----VLHYG---INKFIKKISQAGVK------------------------GLII--PDL----PYEESDYLISVCNL  142 (263)
T ss_pred             ccH----HHHhC---HHHHHHHHHHcCCe------------------------EEEe--cCC----CHHHHHHHHHHHHH
Confidence            210    00000   01233333333333                        3344  443    13577788888888


Q ss_pred             cCCCEEEEEeecCCHhHHHHHHHHh
Q 011136          165 SGADIVKFATTALDITDVARVFQIT  189 (493)
Q Consensus       165 ~gaDIvKia~~a~s~~D~~~l~~~~  189 (493)
                      .|-+.+=++.+..+.+....+.+..
T Consensus       143 ~gi~~I~lv~PtT~~eri~~i~~~a  167 (263)
T CHL00200        143 YNIELILLIAPTSSKSRIQKIARAA  167 (263)
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHhC
Confidence            8888888877776666665555543

>PLN02334 ribulose-phosphate 3-epimerase

Probab=91.29  E-value=6.7  Score=38.22  Aligned_cols=113  Identities=16%  Similarity=0.156  Sum_probs=70.7

Q ss_pred             CCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc----hhHHHHHHhhCCCcEEEEeccCCCCCCCCCC
Q 011136           21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP----RENIKTLIKESPVPTLFTYRPIWEGGQYDGD   96 (493)
Q Consensus        21 ~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~----~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~   96 (493)
                      ++.-.|+.++...+...+..+++++.+.|+|.+-+|+--..-...    .+.++.+++.++.|+-+++-..        +
T Consensus         5 ~~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~--------~   76 (229)
T PLN02334          5 KNDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVT--------N   76 (229)
T ss_pred             cCCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccC--------C
Confidence            344467778777787888889999888899999998754321111    1456677766677777776542        3


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEccc-ccch-hHHHhhcCCCCcEEEEEcc
Q 011136           97 ENERVDVLRLAMELGADYIDVELQV-AREF-NDSIRGKKPEKCKVIVSSH  144 (493)
Q Consensus        97 ~~~~~~ll~~~l~~~~dyIDIEl~~-~~~~-~~~l~~~~~~~~kiI~S~H  144 (493)
                      ++.|.+   .+.+.|+|+|.+=+.. ..+. ...+...+..+.++-+|.|
T Consensus        77 p~d~~~---~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~  123 (229)
T PLN02334         77 PEDYVP---DFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLN  123 (229)
T ss_pred             HHHHHH---HHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEEC
Confidence            445555   4467899999544331 1122 2222222345678888877

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=91.28  E-value=0.25  Score=58.29  Aligned_cols=34  Identities=29%  Similarity=0.411  Sum_probs=31.5

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      .+++|+|||+|.+|.++|+.|++.|++|+|+.+.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~  569 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKK  569 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4689999999999999999999999999999865

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK08163 salicylate hydroxylase; Provisional

Probab=91.27  E-value=0.26  Score=51.51  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=31.9

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      ..+|+|||+|-+|.++|.+|++.|++|+|+.|..+
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            36899999999999999999999999999998753

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.26  E-value=0.53  Score=49.47  Aligned_cols=87  Identities=15%  Similarity=0.096  Sum_probs=54.7

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCC-------CeEEEEeCChH-HHHHHHHHhhhh-----hhcc-cccceEEEEeecccc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKG-------ARVVIANRTYG-ESLTFLRLMSWL-----LLNT-LLFDSVIVIRILLFT  446 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g-------~~i~v~~R~~~-~a~~la~~~~~~-----~~~~-~~~~~~~v~~~l~~~  446 (493)
                      ..++.|||+|..|.|++..|++.|       .+|.++.|+.+ ..+++++.++..     +++. ...+++++-.++.+.
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea   90 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA   90 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence            358999999999999999999987       58999999976 233344444322     2221 122366666655432


Q ss_pred             c-CCceEEEEeccccCCchhhHhhhhhH
Q 011136          447 W-HLKFFIAANIIHLGNHLEWVTAAFNL  473 (493)
Q Consensus       447 ~-~~~~~i~~n~tplG~~~~~~~~~~~~  473 (493)
                      . -.|..+++      +++..+.+-...
T Consensus        91 v~~aDiIvlA------VPsq~l~~vl~~  112 (365)
T PTZ00345         91 VEDADLLIFV------IPHQFLESVLSQ  112 (365)
T ss_pred             HhcCCEEEEE------cChHHHHHHHHH
Confidence            2 13455555      777776644333

>PRK12367 short chain dehydrogenase; Provisional

Probab=91.26  E-value=0.39  Score=47.26  Aligned_cols=37  Identities=38%  Similarity=0.511  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.
T Consensus        11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~   48 (245)
T PRK12367         11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK   48 (245)
T ss_pred             hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence            467899999998 7899999999999999999999986

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=91.26  E-value=1.3  Score=44.51  Aligned_cols=41  Identities=10%  Similarity=0.080  Sum_probs=32.8

Q ss_pred             EEEEEecchHHHHHHHHHHhCC----CeEEEEeCCh-HHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKG----ARVVIANRTY-GESLTFLRL  423 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g----~~i~v~~R~~-~~a~~la~~  423 (493)
                      ++.|||+|-+|.+++..|.+.|    .+|++++|+. ++.+.+...
T Consensus         3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~   48 (277)
T PRK06928          3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDK   48 (277)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHH
Confidence            5899999999999999999988    4899999864 445555443

>PRK09414 glutamate dehydrogenase; Provisional

Probab=91.25  E-value=1.3  Score=47.69  Aligned_cols=96  Identities=18%  Similarity=0.099  Sum_probs=61.5

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEE-e----------CChHHHHHHHH
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA-N----------RTYGESLTFLR  422 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~-~----------R~~~~a~~la~  422 (493)
                      +.|...+++..+..       .+.+++|++|+|.|-|.+|+.++..|.+.|++|+.+ +          -+.+...+..+
T Consensus       212 g~Gv~~~~~~~~~~-------~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~  284 (445)
T PRK09414        212 GYGLVYFAEEMLKA-------RGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKE  284 (445)
T ss_pred             cHHHHHHHHHHHHh-------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHH
Confidence            67777777665542       135788999999999999999999999999976655 5          35554444433


Q ss_pred             Hh--hhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          423 LM--SWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       423 ~~--~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      .-  ....++...  .... .+.++.|..+.+|++||..
T Consensus       285 ~~~~~l~~~~~~~--~~~~-i~~~~i~~~d~DVliPaAl  320 (445)
T PRK09414        285 VRRGRISEYAEEF--GAEY-LEGGSPWSVPCDIALPCAT  320 (445)
T ss_pred             hcCCchhhhhhhc--CCee-cCCccccccCCcEEEecCC
Confidence            22  111111000  0111 2344667778899998874

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=91.23  E-value=0.4  Score=49.97  Aligned_cols=42  Identities=31%  Similarity=0.355  Sum_probs=36.0

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRL  423 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~  423 (493)
                      +.+|+|+|+|.+|..++..++..|+ +|++++++.+|. ++|++
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl-~~A~~  211 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERL-ELAKE  211 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-HHHHH
Confidence            3389999999999999888899998 999999999887 45544

>PRK12827 short chain dehydrogenase; Provisional

Probab=91.20  E-value=0.49  Score=45.47  Aligned_cols=46  Identities=26%  Similarity=0.410  Sum_probs=35.2

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC----ChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR----TYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R----~~~~a~~la~~~  424 (493)
                      +++++++|.|+ ||.|++++..|.+.|++++++.|    +.++.+++.+.+
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~   54 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGI   54 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHH
Confidence            45789999997 88999999999999998888665    444445454443

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.18  E-value=0.48  Score=46.25  Aligned_cols=44  Identities=25%  Similarity=0.410  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHH
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYGESLTFL  421 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R-~~~~a~~la  421 (493)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++..| +.+.++++.
T Consensus         4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~   49 (255)
T PRK06463          4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELR   49 (255)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH
Confidence            356899999997 88999999999999998877655 444444443

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=91.17  E-value=0.71  Score=46.95  Aligned_cols=41  Identities=27%  Similarity=0.223  Sum_probs=34.1

Q ss_pred             EEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHh
Q 011136          384 FVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~  424 (493)
                      +.|||+|-+|..+++.|+..|. +|+++++++++++..+.++
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl   42 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDI   42 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHH
Confidence            4699999999999999998876 9999999988776555433

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=91.15  E-value=0.31  Score=47.85  Aligned_cols=40  Identities=38%  Similarity=0.534  Sum_probs=34.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      .+++|.++|.|+ ||.|++++..|++.|++|++.+|+.++.
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~   46 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDG   46 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            467899999996 7899999999999999999999886553

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.14  E-value=1.2  Score=46.35  Aligned_cols=40  Identities=20%  Similarity=0.189  Sum_probs=35.7

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .++.|||+|.+|.+++..|++.| .++++.|+.+..+.+.+
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~   47 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDIND   47 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHh
Confidence            47999999999999999999998 67888899988888765

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=91.12  E-value=0.85  Score=46.80  Aligned_cols=61  Identities=21%  Similarity=0.377  Sum_probs=46.3

Q ss_pred             CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 011136          136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIG  198 (493)
Q Consensus       136 ~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~~D~~~l~~~~~~~~~PlIa  198 (493)
                      +..|.+-.-..+.|-+.+.-.+++.++.+.|||||+++++  +.+|...+-...++.+.|+|+
T Consensus        19 daPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~--~~e~A~A~~~Ik~~~~vPLVa   79 (361)
T COG0821          19 DAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVP--DMEAAEALKEIKQRLNVPLVA   79 (361)
T ss_pred             CCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhCCCCEEE
Confidence            3344433333445556777889999999999999999998  788887777777778999986

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=91.10  E-value=0.26  Score=54.38  Aligned_cols=33  Identities=33%  Similarity=0.366  Sum_probs=27.2

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      |+|+|||||.+|.++++.|.+.|.+++++.|+.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~   34 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD   34 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence            789999999999999999999999999998864

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=91.09  E-value=7.6  Score=40.04  Aligned_cols=96  Identities=11%  Similarity=0.148  Sum_probs=65.9

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCC----------C--Cc---hhHHHHHHhhCCCcEEEEecc
Q 011136           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN----------F--NP---RENIKTLIKESPVPTLFTYRP   86 (493)
Q Consensus        22 ~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~----------~--~~---~~~l~~l~~~~~~PiI~T~R~   86 (493)
                      ..| +.+.|.+++.+++.+-++.+.+.|+|.|||-...=..          +  ++   .+.++.+++..+.|+-+-+|.
T Consensus        54 e~p-~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~  132 (318)
T TIGR00742        54 ESP-VALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRI  132 (318)
T ss_pred             CCc-EEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            444 5589999999999998888777899999997765210          0  11   233555556668899888886


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc
Q 011136           87 IWEGGQYDGDENERVDVLRLAMELGADYIDVELQV  121 (493)
Q Consensus        87 ~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~  121 (493)
                      -.+-.   .+.+...++.+.+.+.|++.|+|--+.
T Consensus       133 g~~~~---~~~~~~~~~~~~l~~~G~~~itvHgRt  164 (318)
T TIGR00742       133 GIDPL---DSYEFLCDFVEIVSGKGCQNFIVHARK  164 (318)
T ss_pred             CCCCc---chHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            32111   122455677788888899999987654

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.03  E-value=1  Score=47.50  Aligned_cols=46  Identities=26%  Similarity=0.304  Sum_probs=40.8

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      ++|||+|+|.+|--+|.-+.+.+. +|-++||+-.|++.+.+.+...
T Consensus         2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~   48 (429)
T PF10100_consen    2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARS   48 (429)
T ss_pred             CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhC
Confidence            369999999999999999988876 9999999999999998877753

>PRK10637 cysG siroheme synthase; Provisional

Probab=90.99  E-value=0.46  Score=51.43  Aligned_cols=39  Identities=18%  Similarity=0.259  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      .+++||+|||+|+|.+|.-=+..|.+.|++|+|++....
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~   46 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFI   46 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            568899999999999998888899999999999987653

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=90.99  E-value=3.7  Score=39.85  Aligned_cols=118  Identities=21%  Similarity=0.204  Sum_probs=71.7

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (493)
Q Consensus        26 Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (493)
                      +..-+...+.++...-++.+.+.|.+++|+.++.   .+..+.++.+++..+- +++=.-|       -.++    +-.+
T Consensus        17 ~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~---~~~~~~I~~l~~~~p~-~~IGAGT-------Vl~~----~~a~   81 (212)
T PRK05718         17 VVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRT---PAALEAIRLIAKEVPE-ALIGAGT-------VLNP----EQLA   81 (212)
T ss_pred             EEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCC---ccHHHHHHHHHHHCCC-CEEEEee-------ccCH----HHHH
Confidence            3345889999999999999888899999999532   1223556677655432 2221111       1122    3466


Q ss_pred             HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       106 ~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      .+++.|++|+-. -...++.++.-   ++.+.-.|=..    .||+     + ..++.++|||++|+
T Consensus        82 ~a~~aGA~Fivs-P~~~~~vi~~a---~~~~i~~iPG~----~Tpt-----E-i~~a~~~Ga~~vKl  134 (212)
T PRK05718         82 QAIEAGAQFIVS-PGLTPPLLKAA---QEGPIPLIPGV----STPS-----E-LMLGMELGLRTFKF  134 (212)
T ss_pred             HHHHcCCCEEEC-CCCCHHHHHHH---HHcCCCEeCCC----CCHH-----H-HHHHHHCCCCEEEE
Confidence            788899999843 33334444332   23343334111    1443     3 56688899999999

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=90.98  E-value=0.5  Score=48.40  Aligned_cols=45  Identities=18%  Similarity=0.244  Sum_probs=36.7

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKG--ARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g--~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++++||.|+ |+.|++++..|.+.|  ++|++++|+..+...+.+.+
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~   50 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF   50 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh
Confidence            5789999997 889999999999886  48999999877665555443

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	493
2gpt_A	523	Crystal Structure Of Arabidopsis Dehydroquinate Deh		1e-165
2o7q_A	523	Crystal Structure Of The A. Thaliana Dhq-Dehydroshi		1e-164
3js3_A	258	Crystal Structure Of Type I 3-Dehydroquinate Dehydr		8e-22
1nvt_A	287	Crystal Structure Of Shikimate Dehydrogenase (Aroe		4e-19
3l2i_A	276	1.85 Angstrom Crystal Structure Of The 3-Dehydroqui		6e-19
3m7w_A	255	Crystal Structure Of Type I 3-Dehydroquinate Dehydr		8e-19
4guf_A	276	1.5 Angstrom Crystal Structure Of The Salmonella En		3e-18
3nnt_A	276	Crystal Structure Of K170m Mutant Of Type I 3-Dehyd		3e-18
3o1n_A	276	1.03 Angstrom Crystal Structure Of Q236a Mutant Typ		4e-18
1qfe_A	252	The Structure Of Type I 3-Dehydroquinate Dehydratas		5e-18
2egg_A	297	Crystal Structure Of Shikimate 5-Dehydrogenase (Aro		1e-17
3don_A	277	Crystal Structure Of Shikimate Dehydrogenase From S		4e-17
2hk7_A	269	Crystal Structure Of Shikimate Dehydrogenase From A		1e-15
2hk9_A	275	Crystal Structure Of Shikimate Dehydrogenase From A		1e-15
2ox1_A	196	Archaeal Dehydroquinase Length = 196		2e-14
2yr1_A	257	Crystal Structure Of 3-Dehydroquinate Dehydratase F		4e-14
1wxd_A	263	Crystal Structure Of Shikimate 5-dehydrogenase (aro		8e-13
1sfl_A	238	1.9a Crystal Structure Of Staphylococcus Aureus Typ		2e-12
1sfj_A	238	2.4a Crystal Structure Of Staphylococcus Aureus Typ		3e-12
3u62_A	253	Crystal Structure Of Shikimate Dehydrogenase From T		3e-12
2egz_A	219	Crystal Structure Of The 3-Dehydroquinate Dehydrata		2e-11
4fq8_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		3e-11
4fpx_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		3e-11
4fos_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		3e-11
4foo_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		3e-11
4fr5_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		3e-11
3phg_A	269	Crystal Structure Of The Shikimate 5-Dehydrogenase		3e-11
4fsh_A	271	Crystal Structure Of Shikimate Dehydrogenase (aroe)		3e-11
3toz_A	315	2.2 Angstrom Crystal Structure Of Shikimate 5-Dehyd		4e-11
1nyt_A	271	Shikimate Dehydrogenase Aroe Complexed With Nadp+ L		8e-11
3t4e_A	312	1.95 Angstrom Crystal Structure Of Shikimate 5-Dehy		8e-11
3l9c_A	259	The Crystal Structure Of Smu.777 From Streptococcus		9e-10
3fbt_A	282	Crystal Structure Of A Chorismate MutaseSHIKIMATE 5		3e-09
1npd_A	288	X-Ray Structure Of Shikimate Dehydrogenase Complexe		4e-09
1vi2_A	300	Crystal Structure Of Shikimate-5-Dehydrogenase With		5e-09
3tum_B	269	2.15 Angstrom Resolution Crystal Structure Of A Shi		5e-08
2ocz_A	231	The Structure Of A Putative 3-dehydroquinate Dehydr		2e-06
3o8q_A	281	1.45 Angstrom Resolution Crystal Structure Of Shiki		6e-06
3pgj_A	302	2.49 Angstrom Resolution Crystal Structure Of Shiki		6e-06
3o8q_B	275	1.45 Angstrom Resolution Crystal Structure Of Shiki		8e-06
1p74_A	272	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		1e-05
3jyo_A	283	Quinate Dehydrogenase From Corynebacterium Glutamic		2e-05
2nlo_A	302	Crystal Structure Of The Quinate Dehydrogenase From		3e-05
3pwz_A	272	Crystal Structure Of An Ael1 Enzyme From Pseudomona		4e-05
1npy_A	271	Structure Of Shikimate 5-Dehydrogenase-Like Protein		2e-04

>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate Dehydratase- Shikimate Dehydrogenase In Complex With Tartrate And Shikimate Length = 523

Iteration: 1
 Score =  576 bits (1485), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 286/400 (71%), Positives = 329/400 (82%), Gaps = 2/400 (0%)
Query: 21  KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
           KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRLD LK+FNP E++KT+IK+SP+PT
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 81  LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
           LFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF  SI GKKP K KVI
Sbjct: 62  LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLV 200
           VSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+DI DVAR+F IT  +QVP IGLV
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG 260
           MGERGL+SRILC+KFGG+LTFGTL++  VSAPGQPTIKDLLDLYNFR++GPDTKV+GIIG
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVK 320
           KPV HSKSPI++N+AFKSV FNGV+VHLLVD++  F Q YSS+DFAGFSCTIPHKEAA++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR--GRLNVSGGVSSA 378
           CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+ISAIEDGLR  G  +     SS 
Sbjct: 302 CCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 379 LAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYGESL 418
           LA K  VVI                  +VVIANRTY  +L
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERAL 401

>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H) Length = 523

Iteration: 1
 Score =  573 bits (1477), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 285/400 (71%), Positives = 328/400 (82%), Gaps = 2/400 (0%)
Query: 21  KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
           KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRLD LK+FNP E++KT+IK+SP+PT
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 81  LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
           LFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF  SI GKKP K KVI
Sbjct: 62  LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLV 200
           VSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+DI DVAR+F IT  +QVP IGLV
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG 260
           MGERGL+SRILC+KFGG+LTFGTL++  VSAPGQPTIKDLLDLYNFR++GPDTKV+GIIG
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVK 320
           KPV HSKSPI++N+AFKSV FNGV+VHLLVD++  F Q YSS+DFAGFSCTIPHKEAA++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR--GRLNVSGGVSSA 378
            CDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+ISAIEDGLR  G  +     SS 
Sbjct: 302 XCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDXIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 379 LAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYGESL 418
           LA K  VVI                  +VVIANRTY  +L
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERAL 401

>pdb|3JS3|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase (Arod) From Clostridium Difficile With Covalent Reaction Intermediate Length = 258

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 122/233 (52%), Gaps = 14/233 (6%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPVPT 80
           ICVPI+G++   ++ +  +   +  D++E R+D  +N    + +K ++ E       +P 
Sbjct: 22  ICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPL 81
Query: 81  LFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCK 138
           LFT+R + EGG+     +    + +     G  D IDVEL +  E  D +      ++ K
Sbjct: 82  LFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVK 141
Query: 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VHSQ 193
           VI+S+H++  TP  E++ + + R+Q  GAD+ K A    +  DV  + + T     +++ 
Sbjct: 142 VIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYAD 201
Query: 194 VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
            PII + M   G+ISR+    FG  LTFG  ++  VSAPGQ + K+L  + N 
Sbjct: 202 RPIITMSMSGMGVISRLCGEIFGSALTFGAAKS--VSAPGQISFKELNSVLNL 252

>pdb|1NVT|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or Mj1084) In Complex With Nadp+ Length = 287

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFV--HLLVDDIAKFFQTYSSNDFAGFSC 310
           TKV G+IG PV HS SPI++N AFK  G N V+V   +L +++        +    GF+ 
Sbjct: 11  TKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNV 70
Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRL 369
           TIPHK   +K  DE+D  A+ IGAVN I  +  DGK  GYNTD +GA  A+E+ + GR+
Sbjct: 71  TIPHKIEIMKYLDEIDKDAQLIGAVNTI--KIEDGKAIGYNTDGIGARMALEEEI-GRV 126

>pdb|3L2I|A Chain A, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2. Length = 276

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 18/229 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
           I V +MG+++  +  +      +  D++E R+D   N    E+       I+ +I + P+
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
             LFT+R   EGG+      + +D+ R A++ G  D ID+EL     E   ++       
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV-- 194
             VI+S+H++  TP+ E++   + ++Q  GADI K A       DV  +   TV  Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 195 ---PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPGQ ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 266

>pdb|3M7W|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2 In Covalent Complex With Dehydroquinate Length = 255

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 18/229 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
           I V +MG+++  +  +      +  D++E R+D   N    E+       I+ +I + P+
Sbjct: 21  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 80
Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
             LFT+R   EGG+      + +D+ R A++ G  D ID+EL     E   ++       
Sbjct: 81  --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 138
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV-- 194
             VI+S+H++  TP+ E++   + ++Q  GADI K A       DV  +   TV  Q   
Sbjct: 139 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 198
Query: 195 ---PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPGQ ++ DL
Sbjct: 199 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 245

>pdb|4GUF|A Chain A, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica 3- Dehydroquinate Dehydratase (arod) E86a Mutant Length = 276

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 18/229 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
           I V +MG+++  +  +      +  D++E R+D   N    E+       I+ +I + P+
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
             LFT+R    GG+      + +D+ R A++ G  D ID+EL     E   ++       
Sbjct: 102 --LFTFRSAKAGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV-- 194
             VI+S+H++  TP+ E++   + ++Q  GADI K A       DV  +   TV  Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 195 ---PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPGQ ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 266

>pdb|3NNT|A Chain A, Crystal Structure Of K170m Mutant Of Type I 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2 In Non-Covalent Complex With Dehydroquinate. Length = 276

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 18/229 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
           I V +MG+++  +  +      +  D++E R+D   N    E+       I+ +I + P+
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
             LFT+R   EGG+      + +D+ R A++ G  D ID+EL     E   ++       
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV-- 194
             VI+S+H++  TP+ E++   + ++Q  GADI   A       DV  +   TV  Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPMIAVMPQTKADVLTLLTATVEMQERY 219
Query: 195 ---PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPGQ ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 266

>pdb|3O1N|A Chain A, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Length = 276

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 18/229 (7%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
           I V +MG+++  +  +      +  D++E R+D   N    E+       I+ +I + P+
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
             LFT+R   EGG+      + +D+ R A++ G  D ID+EL     E   ++       
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV-- 194
             VI+S+H++  TP+ E++   + ++Q  GADI K A       DV  +   TV  Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 195 ---PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
              PII + M + G+ISR+    FG   TFG ++    SAPG  ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGAISVADL 266

>pdb|1QFE|A Chain A, The Structure Of Type I 3-Dehydroquinate Dehydratase From Salmonella Typhi Length = 252

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 18/239 (7%)
Query: 14  LVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKT-- 71
           ++  GM K    I V +MG  ++ +  +      +  D++E R+D   +    +++ T  
Sbjct: 10  IIGEGMPK----IIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAA 65
Query: 72  -LIKES--PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVA-REFN 126
            +I+++   +P LFT+R   EGG+        + + R A++ G  D ID+EL     +  
Sbjct: 66  RVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVK 125
Query: 127 DSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVF 186
            ++         V++S+H++  TPS E++ + + ++QA GADI K A       DV  + 
Sbjct: 126 ATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLL 185
Query: 187 QITVHSQV-----PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
             T+  Q      P+I + M + G+ISR+    FG   TFG ++    SAPGQ  + DL
Sbjct: 186 TATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQA--SAPGQIAVNDL 242

>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From Geobacillus Kaustophilus Length = 297

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 245 NFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSS 302
           N    G   KV+G+IG PV HS SP+++N+AF  +G    +    V+   +        +
Sbjct: 15  NLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRA 74
Query: 303 NDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
              AG + TIPHK A +   DEVD  A+ IGAVN II   +DG+L GYNTD +G + A+E
Sbjct: 75  LGIAGVNVTIPHKLAVIPFLDEVDEHARRIGAVNTII--NNDGRLVGYNTDGLGYVQALE 132
Query: 363 D 363
           +
Sbjct: 133 E 133

>pdb|3DON|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Staphylococcus Epidermidis Length = 277

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 78/140 (55%), Gaps = 10/140 (7%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVF--VHLLVDDIAKFFQTYSSNDFAGFSCTIP 313
           F +IG P+ HS SP++++  F+S+     +  +++ V+      +  S     GF+ TIP
Sbjct: 3   FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62
Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTD---YVGAISAIEDGLRGRLN 370
           HKE  +   D+++  AKS+GAVN ++ +  DGK  GYNTD   YV  +  I +G+     
Sbjct: 63  HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEGIEDAYI 120
Query: 371 V---SGGVSSALAGKLFVVI 387
           +   +GG S  +A +L+ ++
Sbjct: 121 LILGAGGASKGIANELYKIV 140

>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex Aeolicus In Complex With Mercury At 2.5 Angstrom Resolution Length = 269

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFS 309
            T+++G+IG PV HS SP+  N   +  G N V++   +  +++ K F+ + +    G +
Sbjct: 5   QTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGIN 64
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
            T+P KE  +   D V+  AK IGAVN +  +  +GK +GYNTD++G + +++
Sbjct: 65  VTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLK 115

>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex Aeolicus In Complex With Shikimate And Nadp+ At 2.2 Angstrom Resolution Length = 275

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFS 309
            T+++G+IG PV HS SP+  N   +  G N V++   +  +++ K F+ + +    G +
Sbjct: 11  QTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGIN 70
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
            T+P KE  +   D V+  AK IGAVN +  +  +GK +GYNTD++G + +++
Sbjct: 71  VTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLK 121

>pdb|2OX1|A Chain A, Archaeal Dehydroquinase Length = 196

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 29/197 (14%)
Query: 47  ASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRL 106
           A  AD+VE+R+D       R + + ++         T R + +GG+++GDE ER++ ++ 
Sbjct: 16  AEKADVVELRIDLFDFSGARVDKEKIL---------TCRRVSDGGKFEGDERERIEKMKR 66
Query: 107 AME-LGADYIDVELQV---AREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARI 162
           A + L  DY+D+E  +   A +FN          C++I S HN+  TP   D S L   +
Sbjct: 67  AFDSLNPDYVDLESDLPDSAFDFN----------CRIIESYHNFIRTP---DYSELKGIV 113
Query: 163 QASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFG 222
           +    D+VK AT      DV  + +I  +    ++  +MGER   +R+L A  G    + 
Sbjct: 114 EGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGERFSFTRVLAAYLGSPFIYC 172
Query: 223 TLENGIVSAPGQPTIKD 239
            +  G   APGQ ++ D
Sbjct: 173 YV--GSPKAPGQISLDD 187

>pdb|2YR1|A Chain A, Crystal Structure Of 3-Dehydroquinate Dehydratase From Geobacillus Kaustophilus Hta426 Length = 257

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 107/238 (44%), Gaps = 21/238 (8%)
Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENI-------KTLIKESPV 78
           IC P++GE   K++ +  +      DL+E R D  +  + +E +       + +  E  +
Sbjct: 22  ICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGE--I 79
Query: 79  PTLFTYRPIWEGGQ-YDGDENERVDVLRLAMELGA-DYIDVELQVAREFNDSIRGKKPEK 136
           P LFT R   EGGQ    +E E   ++      GA D +D EL       D  R    E+
Sbjct: 80  PILFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVRR--MTEE 137
Query: 137 CKV--IVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ- 193
           C V  +VS H +  TP  E L   + + +  GADI K A       DV  + Q T  ++ 
Sbjct: 138 CSVWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARR 197
Query: 194 ---VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ 248
              +P+I + MG  G I+R+    FG  +TF        SAPGQ  I D+  + +  Q
Sbjct: 198 ELAIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQS--SAPGQIPIDDVRTVLSILQ 253

>pdb|1WXD|A Chain A, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From Thermus Thermophilus Hb8 Length = 263

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 13/115 (11%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVF------VHLLVDDIAKFFQTYSSNDFAGFS 309
           F ++G PV HS SP ++  A +S+G  G +      +  L   + +  +      F G +
Sbjct: 4   FAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-----FRGVN 58
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
            T+P KEAA+   D V   A+ IGAVN ++  Q +G+LFG+NTD  G + A++ G
Sbjct: 59  LTLPLKEAALAHLDWVSPEAQRIGAVNTVL--QVEGRLFGFNTDAPGFLEALKAG 111

>pdb|1SFL|A Chain A, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3- Dehydroquinase, Apo Form Length = 238

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 16/220 (7%)
Query: 34  SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK----ESPVPTLFTYRPIWE 89
           S+++ ++          D++E+R+D  +N    +  + + K    +     L TYR   +
Sbjct: 15  SIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQ 74
Query: 90  GG--QYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIR---GKKPEKCKVIVSSH 144
           GG  Q+  D    + +  LA   G D ID+E Q   +     R     +    +VI+S H
Sbjct: 75  GGYGQFTNDSYLNL-ISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHH 133
Query: 145 NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQ-ITVHSQV---PIIGLV 200
           N++ TP +++L  +  ++Q    + VK A    +  DV  + Q ++  S      ++G+ 
Sbjct: 134 NFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGIS 193
Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
           M + GLISR     FGG LT+G +  G   APGQ  + DL
Sbjct: 194 MSKLGLISRTAQGVFGGALTYGCI--GEPQAPGQIDVTDL 231

>pdb|1SFJ|A Chain A, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3- Dehydroquinase, With 3-Dehydroquinate Bound Length = 238

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 51  DLVEIRLDGLKNFNPRENIKTLIK----ESPVPTLFTYRPIWEGG--QYDGDENERVDVL 104
           D++E+R+D  +N    +  + + K    +     L TYR   +GG  Q+  D    + + 
Sbjct: 32  DVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNL-IS 90
Query: 105 RLAMELGADYIDVELQVAREFNDSIR---GKKPEKCKVIVSSHNYQYTPSVEDLSNLVAR 161
            LA   G D ID+E Q   +     R     +    +VI+S HN++ TP +++L  +  +
Sbjct: 91  DLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFK 150
Query: 162 IQASGADIVKFATTALDITDVARVFQ-ITVHSQV---PIIGLVMGERGLISRILCAKFGG 217
           +Q    + VK A    +  DV  + Q ++  S      ++G+ M + GLISR     FGG
Sbjct: 151 MQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGG 210
Query: 218 FLTFGTLENGIVSAPGQPTIKDL 240
            LT+G +  G   APGQ  + DL
Sbjct: 211 ALTYGCI--GEPQAPGQIDVTDL 231

>pdb|3U62|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Thermotoga Maritima Length = 253

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 59/112 (52%), Gaps = 18/112 (16%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVF------VHLLVDDIAKFFQTYSSNDFAGFS 309
           F IIG PV HS SP LYNE FK  G N  +            +I +  + Y      GF+
Sbjct: 3   FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILEEYD-----GFN 57
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAI 361
            TIPHKE  ++  +  +  A+ I AVNC+ R    GK  GYNTD+VG + ++
Sbjct: 58  ATIPHKERVMRYVEPSED-AQRIKAVNCVFR----GK--GYNTDWVGVVKSL 102

>pdb|2EGZ|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From Aquifex Aeolicus Vf5 Length = 219

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 22/226 (9%)
Query: 25  LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFN---PRENIKTLIKESPVPTL 81
           LI VP+   +  +   ++ KA   GAD+VE+R+D   + +    +E ++  +    + T+
Sbjct: 2   LIAVPLDDTNFSE---NLKKAKEKGADIVELRVDQFSDTSLNYVKEKLEE-VHSQGLKTI 57
Query: 82  FTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQ----VAREFNDSIRGKKPEKC 137
            T R   EGG+   +  E  + L       +DY D+EL     + + +N +    K    
Sbjct: 58  LTIRSPEEGGREVKNREELFEELSPL----SDYTDIELSSRGLLVKLYNITKEAGK---- 109
Query: 138 KVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPII 197
           K+I+S HN++ TP    +  ++      G  I K A  A    DVAR+  I+   +   I
Sbjct: 110 KLIISYHNFELTPPNWIIREVLREGYRYGG-IPKIAVKANSYEDVARLLCISRQVEGEKI 168
Query: 198 GLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDL 243
            + MG+ G ISR+    FG  +T+ +LE     APGQ  ++++++L
Sbjct: 169 LISMGDYGKISRLAGYVFGSVITYCSLEKAF--APGQIPLEEMVEL 212

>pdb|4FQ8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|4FPX|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n Mutant From Helicobacter Pylori Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|4FOS|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237a Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|4FOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k Mutant From Helicobacter Pylori Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|4FR5|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|3PHG|A Chain A, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori Length = 269

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
           K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
            T+P KE A + CD++  +A   GAVN ++    +  L GYNTD +G  +S  +   +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKL 383
           L + +GG + ALA +L
Sbjct: 122 LILGAGGSAKALACEL 137

>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe) Clinical Variant V2356 From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 18/138 (13%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDF---- 305
           K FG+ G P+ HSKSP+++N  F    K +GF G +  +L+       +++  N+F    
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKKLGFLGHYRPILLP-----LESHIKNEFLHLG 58
Query: 306 -AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIED 363
            +G + T+P KE A + CD++  +A    ++N ++    +  L GYNTD +G  +S    
Sbjct: 59  LSGANVTLPFKERAFQVCDKIKGIALECASINTLVLENDE--LVGYNTDALGFYLSLKHQ 116
Query: 364 GLRGRLNV-SGGVSSALA 380
             +  L + SGG + ALA
Sbjct: 117 NYQNALILGSGGSAKALA 134

>pdb|3TOZ|A Chain A, 2.2 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenase From Listeria Monocytogenes In Complex With Nad. Length = 315

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 75/135 (55%), Gaps = 10/135 (7%)
Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSC 310
           T++ G+I  P+ HS SP ++NEAF  +G + V++   V D  +    Q + + +  G++ 
Sbjct: 37  TELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNV 96
Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED------G 364
           ++P+K    K  D++   A+ +GAVN ++    DG L G+ TD  G + A+++      G
Sbjct: 97  SMPNKTNIHKYLDKLSPAAELVGAVNTVV--NDDGVLTGHITDGTGYMRALKEAGHDIIG 154
Query: 365 LRGRLNVSGGVSSAL 379
            +  +  +GG ++A+
Sbjct: 155 KKMTICGAGGAATAI 169

>pdb|1NYT|A Chain A, Shikimate Dehydrogenase Aroe Complexed With Nadp+ Length = 271

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL--VDDIAKFFQTYSSNDFAGFSCT 311
           + + + G P+ HSKSP ++ +  + +     +  +L  ++D       + S    G + T
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE------DGL 365
           +P KE A    DE+   A   GAVN ++R + DG+L G NTD VG +S +E       GL
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLERLSFIRPGL 120
Query: 366 RGRLNVSGGVS 376
           R  L  +GG S
Sbjct: 121 RILLIGAGGAS 131

>pdb|3T4E|A Chain A, 1.95 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium In Complex With Nad Length = 312

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
           ++ G++  P+ HS SP + N+A +  G    ++   VD+   A   +   +    G   +
Sbjct: 32  ELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVS 91
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGR 368
           +P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    +RG+
Sbjct: 92  MPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDMRGK 149
Query: 369 LNV 371
             V
Sbjct: 150 TMV 152

>pdb|3L9C|A Chain A, The Crystal Structure Of Smu.777 From Streptococcus Mutans Ua159 Length = 259

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 121/251 (48%), Gaps = 32/251 (12%)
Query: 7   LVASGSKLVS--GG--MRKNPTLICVPIMGESVDKM-VVDMGKANASGADLVEIRLDGLK 61
           LV  GS + S  GG  M +    I VP+M +++++   +D+ + +++  D++E R D L 
Sbjct: 14  LVPRGSHMASMTGGQQMGRGSMKIVVPVMPQNIEEANQLDLTRIDST--DIIEWRADYLV 71
Query: 62  NFNPRENIKTLI-----KESPVPTLFTYRPIWEGGQYDGDENERVDVLR-LAMELGADYI 115
               +++I T+      K S    +FT R   EGG       + + ++R +A     DYI
Sbjct: 72  ----KDDILTVAPAIFEKFSGHEVIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYI 127
Query: 116 DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT 175
           D E    R+  + +     +   +I+S HN++ TP  E+L  + + + A    +VK A  
Sbjct: 128 DFEYFSYRDVLEEMY----DFSNLILSYHNFEETP--ENLMEVFSELTALAPRVVKIAVM 181
Query: 176 ------ALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIV 229
                  LD+ +  R F+ T++     + + M + G ISR+     G   TF +LE    
Sbjct: 182 PKNEQDVLDLMNYTRGFK-TLNPNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQE-- 238
Query: 230 SAPGQPTIKDL 240
           SAPGQ ++ D+
Sbjct: 239 SAPGQISLADM 249

>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5- Dehydrogenase Fusion Protein From Clostridium Acetobutylicum Length = 282

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           M  +T ++G+IG+ +GHS S  ++   F+ VG  G++    V  + + +   T+      
Sbjct: 1   MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG 356
           G + TIP+K   +K   E+   A+ IGAVN +  + S   + G+NTDY+G
Sbjct: 61  GLNVTIPYKVEVMKELYEISEKARKIGAVNTL--KFSREGISGFNTDYIG 108

>pdb|1NPD|A Chain A, X-Ray Structure Of Shikimate Dehydrogenase Complexed With Nad+ From E.Coli (Ydib) Northeast Structural Genomics Research Consortium (Nesg) Target Er24 Length = 288

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
           ++ G+   P+ HS SP   N+A +  G    +    VD+       +   +    G   +
Sbjct: 8   ELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXRGTGVS 67
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGR 368
            P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+
Sbjct: 68  XPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGK 125
Query: 369 LNV---SGGVSSALAGK 382
             V   +GG S+A+  +
Sbjct: 126 TXVLLGAGGASTAIGAQ 142

>pdb|1VI2|A Chain A, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad Length = 300

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
           ++ G+   P+ HS SP   N+A +  G    +    VD+       +   +    G   +
Sbjct: 10  ELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXRGTGVS 69
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGR 368
            P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+
Sbjct: 70  XPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGK 127
Query: 369 LNV---SGGVSSALAGK 382
             V   +GG S+A+  +
Sbjct: 128 TXVLLGAGGASTAIGAQ 144

>pdb|2OCZ|A Chain A, The Structure Of A Putative 3-dehydroquinate Dehydratase From Streptococcus Pyogenes Length = 231

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 28/231 (12%)
Query: 22  NPTLICVPIMGESVDK-MVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLI-----KE 75
           N   I  P+     D+   +D+ K      +L+E R D    F P++ I  +      K 
Sbjct: 2   NAXRIVAPVXPRHFDEAQAIDISKY--EDVNLIEWRAD----FLPKDEIVAVAPAIFEKF 55
Query: 76  SPVPTLFTYRPIWEGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFNDSIRGKKP 134
           +    +FT R + EGG       E VD+++ +      DYID E    +    S+  +  
Sbjct: 56  AGKEIIFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHK----SVFQEXL 111
Query: 135 EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA------LDITDVARVFQI 188
           +   +I+S HN++ TP  E+L    +        +VK A         LD+ +  R F+ 
Sbjct: 112 DFPNLILSYHNFEETP--ENLXEAFSEXTKLAPRVVKIAVXPQSEQDVLDLXNYTRGFK- 168
Query: 189 TVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD 239
           T++ +     +  G+ G +SR      G   T+ +L++  VS PGQ T+ D
Sbjct: 169 TLNPEQEFATISXGKLGRLSRFAGDVIGSSWTYVSLDH--VSGPGQVTLND 217

>pdb|3O8Q|A Chain A, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae Length = 281

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVH--LLVDDIAKFFQTYSSNDFA 306
           M      + + G P+ HSKSP ++    +    + ++    + VD   +  + + +    
Sbjct: 4   MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 63
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAIS 359
           G + T+P KE A +  D +   A+  GAVN  +++  DG++ G NTD  G + 
Sbjct: 64  GCNVTVPFKEEAYRFADRLTERARLAGAVN-TLKKLDDGEILGDNTDGEGLVQ 115

>pdb|3PGJ|A Chain A, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Shikimate Length = 302

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVH--LLVDDIAKFFQTYSSNDFA 306
           M      + + G P+ HSKSP ++    +    + ++    + VD   +  + + +    
Sbjct: 25  MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 84
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAIS 359
           G + T+P KE A +  D +   A+  GAVN  +++  DG++ G NTD  G + 
Sbjct: 85  GCNVTVPFKEEAYRFADRLTERARLAGAVN-TLKKLDDGEILGDNTDGEGLVQ 136

>pdb|3O8Q|B Chain B, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae Length = 275

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVH--LLVDDIAKFFQTYSSNDFAGFSCTIP 313
           + + G P+ HSKSP ++    +    + ++    + VD   +  + + +    G + T+P
Sbjct: 5   YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVP 64
Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAIS 359
            KE A +  D +   A+  GAVN  +++  DG++ G NTD  G + 
Sbjct: 65  FKEEAYRFADRLTERARLAGAVN-TLKKLDDGEILGDNTDGEGLVQ 109

>pdb|1P74|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) From Haemophilus Influenzae Length = 272

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 255 VFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL--VDDIAKFFQTYSSNDFAGFSCTI 312
           ++ + G P+  SKSP++ N+          ++  L  +D   +    +      G + T 
Sbjct: 3   LYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITS 62
Query: 313 PHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
           P KE A +  DE    AK   A N + ++  DGKL+  NTD +G ++ ++     RLN
Sbjct: 63  PFKERAYQLADEYSQRAKLAEACNTL-KKLDDGKLYADNTDGIGLVTDLQ-----RLN 114

>pdb|3JYO|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In Complex With Nad Length = 283

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSND 304
           D+ + G+IG+ +  S++P ++     + G   V+  +          D+           
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62
Query: 305 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
           F G + T P+K+A +   DEV   A  +GAVN ++   + G   G+NTD  G    +E+G
Sbjct: 63  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVV-IDATGHTTGHNTDVSGFGRGMEEG 121
Query: 365 L 365
           L
Sbjct: 122 L 122

>pdb|2NLO|A Chain A, Crystal Structure Of The Quinate Dehydrogenase From Corynebacterium Glutamicum Length = 302

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSND 304
           D+ + G+IG+ +  S++P ++     + G   V+  +          D+           
Sbjct: 22  DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 81
Query: 305 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
           F G + T P+K+A +   DEV   A  +GAVN ++   + G   G+NTD  G    +E+G
Sbjct: 82  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVV-IDATGHTTGHNTDVSGFGRGMEEG 140
Query: 365 L 365
           L
Sbjct: 141 L 141

>pdb|3PWZ|A Chain A, Crystal Structure Of An Ael1 Enzyme From Pseudomonas Putida Length = 272

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 78/202 (38%), Gaps = 39/202 (19%)
Query: 256 FGIIGKPVGHSKSPILY-------NEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGF 308
           + +IG+P+ H+KSP+++       N+  +     G      +DD       + S    G 
Sbjct: 5   YAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGS-----LDDFEAQVLQFRSEGGKGM 59
Query: 309 SCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---- 364
           + T P K  A +  D     A+   A N +  +  DG++   N D +G +  IE+     
Sbjct: 60  NITAPFKLRAFELADRRSERAQLARAANAL--KFEDGRIVAENFDGIGLLRDIEENLGEP 117
Query: 365 LRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYGESLTF---- 420
           LR R  +  G   A+ G L   +                   +VIANR   ++L      
Sbjct: 118 LRNRRVLLLGAGGAVRGALLPFL-------------QAGPSELVIANRDMAKALALRNEL 164
Query: 421 ----LRLMSWLLLNTLLFDSVI 438
               LR+  +  L    FD V+
Sbjct: 165 DHSRLRISRYEALEGQSFDIVV 186

>pdb|1NPY|A Chain A, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607 Length = 271

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 271 LYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAK 330
            +N  +  +G N ++      DI    +   +    G + ++P KE  +   DE+   A+
Sbjct: 23  FHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHPSAQ 82
Query: 331 SIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
           +I +VN I+    +G L  YNTDY+  +  IE
Sbjct: 83  AIESVNTIV--NDNGFLRAYNTDYIAIVKLIE 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	493
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	0.0
2egz_A	219	3-dehydroquinate dehydratase; aquifex aeolicus VF5	6e-71
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	2e-70
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	3e-70
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	6e-68
3js3_A	258	3-dehydroquinate dehydratase; AROD, covalent react	7e-67
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	1e-66
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	4e-66
3l9c_A	259	3-dehydroquinate dehydratase; AROD, amino-acid bio	2e-65
2ox1_A	196	3-dehydroquinate dehydratase; (beta-alpha)8 barrel	7e-61
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	9e-61
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	5e-60
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	9e-60
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	4e-58
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	1e-56
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	4e-55
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	1e-54
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	4e-54
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	3e-52
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	2e-50
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	4e-46
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	1e-44
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	6e-44
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	6e-44
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	7e-43
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* Length = 523

 Score =  539 bits (1390), Expect = 0.0
 Identities = 302/396 (76%), Positives = 344/396 (86%), Gaps = 2/396 (0%)

Query: 21  KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
           KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRLD LK+FNP E++KT+IK+SP+PT
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61

Query: 81  LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
           LFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF  SI GKKP K KVI
Sbjct: 62  LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121

Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLV 200
           VSSHNYQ TPSVEDL  LVARIQ +GADIVK ATTA+DI DVAR+F IT  +QVP IGLV
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181

Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG 260
           MGERGL+SRILC+KFGG+LTFGTL++  VSAPGQPTIKDLLDLYNFR++GPDTKV+GIIG
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241

Query: 261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVK 320
           KPV HSKSPI++N+AFKSV FNGV+VHLLVD++  F Q YSS+DFAGFSCTIPHKEAA++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301

Query: 321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR--GRLNVSGGVSSA 378
           CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+ISAIEDGLR  G  +     SS 
Sbjct: 302 CCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSP 361

Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414
           LA K  VVIGAGGAGKALAYGAK KGA+VVIANRTY
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTY 397

>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A Length = 219

 Score =  224 bits (571), Expect = 6e-71
 Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 12/223 (5%)

Query: 25  LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTL--IKESPVPTLF 82
           LI VP+   +  + +    KA   GAD+VE+R+D   + +     + L  +    + T+ 
Sbjct: 2   LIAVPLDDTNFSENLK---KAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTIL 58

Query: 83  TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVS 142
           T R   EGG+   +  E  +     +   +DY D+EL             K    K+I+S
Sbjct: 59  TIRSPEEGGREVKNREELFE----ELSPLSDYTDIELSSRGLLVKLYNITKEAGKKLIIS 114

Query: 143 SHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMG 202
            HN++ TP    +  ++      G  I K A  A    DVAR+  I+   +   I + MG
Sbjct: 115 YHNFELTPPNWIIREVLREGYRYG-GIPKIAVKANSYEDVARLLCISRQVEGEKILISMG 173

Query: 203 ERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
           + G ISR+    FG  +T+ +LE     APGQ  ++++++L  
Sbjct: 174 DYGKISRLAGYVFGSVITYCSLEKA--FAPGQIPLEEMVELRK 214

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  224 bits (572), Expect = 2e-70
 Identities = 67/239 (28%), Positives = 102/239 (42%), Gaps = 13/239 (5%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
             IC P++GE   K++ +  +      DL+E R D  +  + +E +             +
Sbjct: 20  PCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEI 79

Query: 79  PTLFTYRPIWEGGQY-DGDENERVDVLRLAMELGA-DYIDVELQVAREFNDSIRGKKPEK 136
           P LFT R   EGGQ    +E E   ++      GA D +D EL       D  R  +   
Sbjct: 80  PILFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVRRMTEECS 139

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ--- 193
             ++VS H +  TP  E L   + + +  GADI K A       DV  + Q T  ++   
Sbjct: 140 VWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARREL 199

Query: 194 -VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGP 251
            +P+I + MG  G I+R+    FG  +TF        SAPGQ  I D+  + +  Q   
Sbjct: 200 AIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQ--SSAPGQIPIDDVRTVLSILQTYS 256

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* Length = 238

 Score =  222 bits (568), Expect = 3e-70
 Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 17/240 (7%)

Query: 19  MRKNPTLICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK--- 74
           M      +   I  + S+++ ++          D++E+R+D  +N    +  + + K   
Sbjct: 1   MTH--VEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKV 58

Query: 75  -ESPVPTLFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREFNDS---I 129
            +     L TYR   +GG      +  ++++  LA   G D ID+E Q   +       I
Sbjct: 59  MQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRII 118

Query: 130 RGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT 189
              +    +VI+S HN++ TP +++L  +  ++Q    + VK A    +  DV  + Q  
Sbjct: 119 THLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAM 178

Query: 190 V----HSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
                     ++G+ M + GLISR     FGG LT+G +      APGQ  + DL     
Sbjct: 179 STFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGE--PQAPGQIDVTDLKAQVT 236

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* Length = 312

 Score =  219 bits (560), Expect = 6e-68
 Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 16/187 (8%)

Query: 230 SAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL 289
           S+      ++L    N   +    ++ G++  P+ HS SP + N+A +  G    ++   
Sbjct: 8   SSGVDLGTENLYFQSNAMDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFE 67

Query: 290 V--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKL 347
           V     A   +   +    G   ++P+K+ A +  DE+   AK +GA+N I+    DG L
Sbjct: 68  VDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYL 125

Query: 348 FGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R 406
            GYNTD  G I AI++               + GK  V++GAGGA  A+   A  +G   
Sbjct: 126 RGYNTDGTGHIRAIKESGFD-----------MRGKTMVLLGAGGAATAIGAQAAIEGIKE 174

Query: 407 VVIANRT 413
           + + NR 
Sbjct: 175 IKLFNRK 181

>3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate, amino-acid biosynthesis, aromatic amino acid biosynthesis, lyase; HET: DHS; 2.20A {Clostridium difficile} Length = 258

 Score =  214 bits (547), Expect = 7e-67
 Identities = 71/235 (30%), Positives = 122/235 (51%), Gaps = 14/235 (5%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
             ICVPI+G++   ++ +  +   +  D++E R+D  +N    + +K ++ E       +
Sbjct: 20  PKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDI 79

Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRGK-KPEK 136
           P LFT+R + EGG+     +    + +     G  D IDVEL +  E  D +      ++
Sbjct: 80  PLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKE 139

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VH 191
            KVI+S+H++  TP  E++ + + R+Q  GAD+ K A    +  DV  + + T     ++
Sbjct: 140 VKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIY 199

Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
           +  PII + M   G+ISR+    FG  LTFG  ++  VSAPGQ + K+L  + N 
Sbjct: 200 ADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKS--VSAPGQISFKELNSVLNL 252

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1} Length = 231

 Score =  213 bits (543), Expect = 1e-66
 Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 16/237 (6%)

Query: 22  NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPT 80
           N   I  P+M    D+    +  +     +L+E R D L           + ++ +    
Sbjct: 2   NAMRIVAPVMPRHFDEAQ-AIDISKYEDVNLIEWRADFLPKDEIVAVAPAIFEKFAGKEI 60

Query: 81  LFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKV 139
           +FT R + EGG       E VD++  +      DYID E    +     +     +   +
Sbjct: 61  IFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHKSVFQEML----DFPNL 116

Query: 140 IVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VHSQV 194
           I+S HN++ TP  E+L    + +      +VK A       DV  +   T     ++ + 
Sbjct: 117 ILSYHNFEETP--ENLMEAFSEMTKLAPRVVKIAVMPQSEQDVLDLMNYTRGFKTLNPEQ 174

Query: 195 PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGP 251
               + MG+ G +SR      G   T+ +L++  VS PGQ T+ D+  +    +M  
Sbjct: 175 EFATISMGKLGRLSRFAGDVIGSSWTYVSLDH--VSGPGQVTLNDMKRIIEVLEMDI 229

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 3nnt_A* 3oex_A 3m7w_A 1gqn_A 1l9w_A* 1qfe_A* Length = 276

 Score =  213 bits (543), Expect = 4e-66
 Identities = 64/237 (27%), Positives = 111/237 (46%), Gaps = 14/237 (5%)

Query: 21  KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE----- 75
           +    I V +MG+++  +  +      +  D++E R+D   N    E++           
Sbjct: 37  EGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREII 96

Query: 76  SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDS-IRGKK 133
           +  P LFT+R   EGG+      + +D+ R A++ G  D ID+EL    +   + +    
Sbjct: 97  TDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAH 156

Query: 134 PEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITV--- 190
                VI+S+H++  TP+ E++   + ++Q  GADI K A       DV  +   TV   
Sbjct: 157 QHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQ 216

Query: 191 --HSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
             ++  PII + M + G+ISR+    FG   TFG ++    SAPG  ++ DL  +  
Sbjct: 217 ERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGAISVADLRTVLT 271

>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans} Length = 259

 Score =  211 bits (538), Expect = 2e-65
 Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 16/234 (6%)

Query: 19  MRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SP 77
           M +    I VP+M +++++    +        D++E R D L   +       + ++ S 
Sbjct: 30  MGRGSMKIVVPVMPQNIEEAN-QLDLTRIDSTDIIEWRADYLVKDDILTVAPAIFEKFSG 88

Query: 78  VPTLFTYRPIWEGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFNDSIRGKKPEK 136
              +FT R   EGG       + + ++R +A     DYID E    R+  + +     + 
Sbjct: 89  HEVIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMY----DF 144

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VH 191
             +I+S HN++ TP  E+L  + + + A    +VK A    +  DV  +   T     ++
Sbjct: 145 SNLILSYHNFEETP--ENLMEVFSELTALAPRVVKIAVMPKNEQDVLDLMNYTRGFKTLN 202

Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
                + + M + G ISR+     G   TF +LE    SAPGQ ++ D+  +  
Sbjct: 203 PNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQE--SAPGQISLADMRKIKE 254

>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus} Length = 196

 Score =  197 bits (501), Expect = 7e-61
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 31/221 (14%)

Query: 26  ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYR 85
           +   +      ++        A  AD+VE+R+D       R +            + T R
Sbjct: 3   LVATLSSPEELEL--------AEKADVVELRIDLFDFSGARVDK---------EKILTCR 45

Query: 86  PIWEGGQYDGDENERVDVLRLAME-LGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSH 144
            + +GG+++GDE ER++ ++ A + L  DY+D+E  +     D         C++I S H
Sbjct: 46  RVSDGGKFEGDERERIEKMKRAFDSLNPDYVDLESDLPDSAFDF-------NCRIIESYH 98

Query: 145 NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGER 204
           N+  TP   +L      ++    D+VK AT      DV  + +I  +    ++  +MGER
Sbjct: 99  NFIRTPDYSEL---KGIVEGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGER 154

Query: 205 GLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
              +R+L A  G    +  + +    APGQ ++ D  ++ +
Sbjct: 155 FSFTRVLAAYLGSPFIYCYVGS--PKAPGQISLDDAREIIS 193

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* Length = 315

 Score =  200 bits (512), Expect = 9e-61
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 17/191 (8%)

Query: 227 GIVSAPGQPTIKDLLDLYNFRQM-GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVF 285
           G+         +         +     T++ G+I  P+ HS SP ++NEAF  +G + V+
Sbjct: 10  GVDLGTENLYFQSNAMTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVY 69

Query: 286 VHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQS 343
           +   V   ++    Q + + +  G++ ++P+K    K  D++   A+ +GAVN ++    
Sbjct: 70  LAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVND-- 127

Query: 344 DGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAK 403
           DG L G+ TD  G + A+++               + GK   + GAGGA  A+   A   
Sbjct: 128 DGVLTGHITDGTGYMRALKEAGHD-----------IIGKKMTICGAGGAATAICIQAALD 176

Query: 404 GA-RVVIANRT 413
           G   + I NR 
Sbjct: 177 GVKEISIFNRK 187

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Length = 275

 Score =  197 bits (504), Expect = 5e-60
 Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 18/203 (8%)

Query: 243 LYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTY 300
            ++   +   T+++G+IG PV HS SP+  N   +  G N V++   +  +++ K F+ +
Sbjct: 2   HHHHHMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGF 61

Query: 301 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISA 360
            +    G + T+P KE  +   D V+  AK IGAVN +     +GK +GYNTD++G + +
Sbjct: 62  KALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKS 119

Query: 361 IEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY--GESL 418
           ++  +             +  K  +V+GAGGA +A+ Y    +GA+V + NRT      L
Sbjct: 120 LKSLIPE-----------VKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKL 168

Query: 419 -TFLRLMSWLLLNTLLFDSVIVI 440
                L        ++    +++
Sbjct: 169 AQKFPLEVVNSPEEVIDKVQVIV 191

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 Length = 287

 Score =  197 bits (503), Expect = 9e-60
 Identities = 75/206 (36%), Positives = 104/206 (50%), Gaps = 28/206 (13%)

Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           +   TKV G+IG PV HS SPI++N AFK  G N V+V   V  +++        +    
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66

Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
           GF+ TIPHK   +K  DE+D  A+ IGAVN I     DGK  GYNTD +GA  A+E+ + 
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEEI- 123

Query: 367 GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY--GESL------ 418
                       +  K  V+ GAGGA +A+A+   AK   ++IANRT    E+L      
Sbjct: 124 ----------GRVKDKNIVIYGAGGAARAVAFEL-AKDNNIIIANRTVEKAEALAKEIAE 172

Query: 419 ----TFLRLMSWLLLNTLLFDSVIVI 440
                F   + +  L+  L    I+I
Sbjct: 173 KLNKKFGEEVKFSGLDVDLDGVDIII 198

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} Length = 297

 Score =  193 bits (492), Expect = 4e-58
 Identities = 71/207 (34%), Positives = 99/207 (47%), Gaps = 23/207 (11%)

Query: 245 NFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSS 302
           N    G   KV+G+IG PV HS SP+++N+AF  +G    +    V    +        +
Sbjct: 15  NLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRA 74

Query: 303 NDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
              AG + TIPHK A +   DEVD  A+ IGAVN II    DG+L GYNTD +G + A+E
Sbjct: 75  LGIAGVNVTIPHKLAVIPFLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALE 132

Query: 363 DGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY--GESL- 418
           + +             L GK  +VIGAGG  + + +   +  A R+ +ANRT    E L 
Sbjct: 133 EEMNI----------TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLV 182

Query: 419 -----TFLRLMSWLLLNTLLFDSVIVI 440
                      S     T L +  I+I
Sbjct: 183 REGDERRSAYFSLAEAETRLAEYDIII 209

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* Length = 269

 Score =  188 bits (480), Expect = 1e-56
 Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 23/192 (11%)

Query: 253 TKVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGF 308
            K FG+ G P+ HSKSP+++N  F    K + F G +  +L+   +     +     +G 
Sbjct: 3   LKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGA 62

Query: 309 SCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGR 368
           + T+P KE A + CD++  +A   GAVN ++    + +L GYNTD +G   +++      
Sbjct: 63  NVTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQ----- 115

Query: 369 LNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG--ESLTFLRLMSW 426
                        +  +++GAGG+ KALA   K +G +V + NR+    +    L    +
Sbjct: 116 ----------KNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF 165

Query: 427 LLLNTLLFDSVI 438
           +      FD +I
Sbjct: 166 MEPPKSAFDLII 177

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 Length = 271

 Score =  184 bits (470), Expect = 4e-55
 Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 18/168 (10%)

Query: 249 MGPDTKV-FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAG 307
           +  DT++   + G+P   +     +N  +  +G N ++      DI    +   +    G
Sbjct: 2   INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59

Query: 308 FSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRG 367
            + ++P KE  +   DE+   A++I +VN I+    +G L  YNTDY+  +  IE     
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKYHLN 117

Query: 368 RLNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTY 414
           +                +V G+GG  KA+      +   ++ I  R  
Sbjct: 118 K------------NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV 153

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} Length = 282

 Score =  183 bits (468), Expect = 1e-54
 Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 19/196 (9%)

Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           M  +T ++G+IG+ +GHS S  ++   F+ VG  G++    V  + + +   T+      
Sbjct: 1   MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60

Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
           G + TIP+K   +K   E+   A+ IGAVN +        + G+NTDY+G    +     
Sbjct: 61  GLNVTIPYKVEVMKELYEISEKARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSK--- 115

Query: 367 GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTY--GESL-TFLR 422
               V       +   + VV+G+GGA +A+    K   A+ + +  R       +    +
Sbjct: 116 --FRVE------IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFK 167

Query: 423 LMSWLLLNTLLFDSVI 438
           ++S+  L+ L  D +I
Sbjct: 168 VISYDELSNLKGDVII 183

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A Length = 283

 Score =  182 bits (464), Expect = 4e-54
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 20/171 (11%)

Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSND 304
           D+ + G+IG+ +  S++P ++     + G   V+  +          D+           
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62

Query: 305 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
           F G + T P+K+A +   DEV   A  +GAVN ++     G   G+NTD  G    +E+G
Sbjct: 63  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG 121

Query: 365 LRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY 414
           L                   V +GAGG G A+AY     G  ++ +A+   
Sbjct: 122 LPN-----------AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* Length = 263

 Score =  176 bits (449), Expect = 3e-52
 Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 17/163 (10%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
             F ++G PV HS SP ++  A +S+G  G +       + +    +      F G + T
Sbjct: 2   LRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-FRGVNLT 60

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
           +P KEAA+   D V   A+ IGAVN +++   +G+LFG+NTD  G + A++ G       
Sbjct: 61  LPLKEAALAHLDWVSPEAQRIGAVNTVLQV--EGRLFGFNTDAPGFLEALKAGG------ 112

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414
                  L G   +V+GAGGAG+A+A+  +  G  V + NRT 
Sbjct: 113 -----IPLKGPA-LVLGAGGAGRAVAFALREAGLEVWVWNRTP 149

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* Length = 277

 Score =  172 bits (439), Expect = 2e-50
 Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 19/191 (9%)

Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIP 313
           F +IG P+ HS SP++++  F+S+     +  + V  +      +  S     GF+ TIP
Sbjct: 3   FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62

Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSG 373
           HKE  +   D+++  AKS+GAVN ++ +  DGK  GYNTD +G ++ ++    G      
Sbjct: 63  HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEG------ 114

Query: 374 GVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTY--GESL-TFLRLMSWLLL 429
                +     +++GAGGA K +A    K     + +ANRT     +    +  ++    
Sbjct: 115 -----IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHA 169

Query: 430 NTLLFDSVIVI 440
            + L +  I+I
Sbjct: 170 ESHLDEFDIII 180

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} Length = 253

 Score =  160 bits (407), Expect = 4e-46
 Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 28/191 (14%)

Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIP 313
           F IIG PV HS SP LYNE FK  G N  +    +  +      +     ++ GF+ TIP
Sbjct: 3   FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRI-LEEYDGFNATIP 61

Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSG 373
           HKE  ++  +  +  A+ I AVNC+ R +      GYNTD+VG + ++E           
Sbjct: 62  HKERVMRYVEPSED-AQRIKAVNCVFRGK------GYNTDWVGVVKSLEG---------- 104

Query: 374 GVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTY--GESLTF-LRLMSWLLL 429
                   +  VV+GAGGA +A+ Y   +     + + NRT    ++L F +++ S   L
Sbjct: 105 ----VEVKEPVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQL 160

Query: 430 NTLLFDSVIVI 440
           + ++  +  + 
Sbjct: 161 DEVVKKAKSLF 171

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 Length = 271

 Score =  156 bits (398), Expect = 1e-44
 Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 14/162 (8%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
           + + + G P+ HSKSP ++ +  + +     +  +L   +D       + S    G + T
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
           +P KE A    DE+   A   GAVN ++R + DG+L G NTD VG +S +E     RL+ 
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLE-----RLSF 115

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413
                    G   ++IGAGGA + +     +    V I NRT
Sbjct: 116 I------RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT 151

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* Length = 272

 Score =  154 bits (393), Expect = 6e-44
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 14/162 (8%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
            ++ + G P+  SKSP++ N+          ++  L   D   +    +      G + T
Sbjct: 2   DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
            P KE A +  DE    AK   A N + +   DGKL+  NTD +G ++ ++     RLN 
Sbjct: 62  SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNTDGIGLVTDLQ-----RLNW 115

Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413
                     +  +++GAGGA K +          +V+ANRT
Sbjct: 116 L------RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT 151

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* Length = 281

 Score =  155 bits (394), Expect = 6e-44
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 15/169 (8%)

Query: 248 QMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDF 305
            M      + + G P+ HSKSP ++    +    + ++    V  D   +  + + +   
Sbjct: 3   AMASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGG 62

Query: 306 AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL 365
            G + T+P KE A +  D +   A+  GAVN + +   DG++ G NTD  G +  +    
Sbjct: 63  RGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLL--- 118

Query: 366 RGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRT 413
                V       L G   ++IGAGGA + +       + A + + NRT
Sbjct: 119 --AQQVL------LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRT 159

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} Length = 272

 Score =  152 bits (386), Expect = 7e-43
 Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 23/197 (11%)

Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSC 310
           +  + +IG+P+ H+KSP+++    ++      +  +    DD       + S    G + 
Sbjct: 2   SDRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNI 61

Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
           T P K  A +  D     A+   A N +     DG++   N D +G +  IE+     L 
Sbjct: 62  TAPFKLRAFELADRRSERAQLARAANALKFE--DGRIVAENFDGIGLLRDIEE----NLG 115

Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYG--ESL------TFL 421
                   L  +  +++GAGGA +       +A  + +VIANR      +L      + L
Sbjct: 116 EP------LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRL 169

Query: 422 RLMSWLLLNTLLFDSVI 438
           R+  +  L    FD V+
Sbjct: 170 RISRYEALEGQSFDIVV 186

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 36/256 (14%), Positives = 72/256 (28%), Gaps = 47/256 (18%)

Query: 237 IKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKF 296
            KD+ D+   + +    ++  II      S +  L+     S     V          KF
Sbjct: 35  CKDVQDM--PKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEMV---------QKF 82

Query: 297 FQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFG-YNTDYV 355
            +     ++  F  +    E              +   +    R  +D ++F  YN   +
Sbjct: 83  VEEVLRINY-KFLMSPIKTEQ-------RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 356 GAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGK-ALAYGAKAKGARVVIANRTY 414
                +   L   L  +  V         ++ G  G+GK  +A         V     +Y
Sbjct: 135 QPYLKLRQALL-ELRPAKNV---------LIDGVLGSGKTWVA-------LDVC---LSY 174

Query: 415 GESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGN---HLEWVTAAF 471
                    + WL L        ++  +    + +     +   H  N    +  + A  
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 472 NLFFYLT--CNSYVVM 485
                     N  +V+
Sbjct: 235 RRLLKSKPYENCLLVL 250

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 65/407 (15%), Positives = 118/407 (28%), Gaps = 131/407 (32%)

Query: 3   SPNLLV----ASG-SKLVSGGMRKNPTLICVPIMGESVDKMV-VDMGKANASGADLVEI- 55
           + N+L+     SG + +             +        K+  +++   N S   ++E+ 
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD------FKIFWLNLKNCN-SPETVLEML 202

Query: 56  -----RLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL 110
                ++D   N+  R +  + IK          R + +   Y       + VL      
Sbjct: 203 QKLLYQID--PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCLLVLL----- 251

Query: 111 GADYIDV-ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADI 169
                +V   +    FN          CK+++++   Q T                    
Sbjct: 252 -----NVQNAKAWNAFN--------LSCKILLTTRFKQVT-------------------- 278

Query: 170 VKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIV 229
                   D    A    I++        L   E     + L  K+        L+    
Sbjct: 279 --------DFLSAATTTHISLDHHSM--TLTPDE----VKSLLLKY--------LDCRPQ 316

Query: 230 SAPGQ-----P--------TIKDLLDLY-NFRQMGPDTKVFGIIGKPVGHSKSPILYNEA 275
             P +     P        +I+D L  + N++ +  D K+  II   +   + P  Y + 
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLE-PAEYRKM 374

Query: 276 FKSVGFNGVF---VH----LL-----------VDDIAKFFQTYS--SNDFAGFSCTIP-- 313
           F  +    VF    H    LL           V  +      YS         + +IP  
Sbjct: 375 FDRL---SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG----KLFGYNTDYVG 356
           + E  VK  +E       +   N      SD      L  Y   ++G
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	493
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	100.0
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	100.0
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	100.0
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	100.0
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	100.0
3l9c_A	259	3-dehydroquinate dehydratase; AROD, amino-acid bio	100.0
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	100.0
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	100.0
2egz_A	219	3-dehydroquinate dehydratase; aquifex aeolicus VF5	100.0
2ox1_A	196	3-dehydroquinate dehydratase; (beta-alpha)8 barrel	100.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	100.0
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	100.0
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	100.0
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	100.0
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	100.0
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	100.0
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	100.0
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	100.0
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	100.0
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	100.0
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	100.0
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	100.0
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	100.0
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	100.0
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	100.0
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	100.0
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.93
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	99.92
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.59
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.94
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.92
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.87
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.85
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.31
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.25
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.11
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	98.08
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.04
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.8
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.79
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.77
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.76
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.74
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	97.72
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.63
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.57
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.39
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.34
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.32
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.28
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.21
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	97.2
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.2
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	97.18
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.15
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.14
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.14
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	97.14
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.1
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.04
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.04
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.03
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	97.02
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.0
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	96.96
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.92
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.84
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.82
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.82
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.76
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.76
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.73
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.73
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.71
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.69
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.67
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.65
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.62
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.61
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.6
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.59
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.58
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.58
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.58
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.57
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.55
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.53
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.52
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.52
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.51
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.5
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.48
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.48
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.46
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.43
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.42
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.41
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.41
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.4
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.39
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	96.39
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.38
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	96.37
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.36
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.36
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	96.35
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.35
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.33
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.33
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.33
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.32
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.32
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.32
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.31
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	96.31
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.31
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.31
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.3
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.3
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.29
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.28
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.27
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.27
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.27
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.27
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.27
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.25
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.25
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.25
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.25
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.24
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.23
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.23
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.22
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.22
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.22
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.21
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.21
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.21
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	96.21
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.19
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.18
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.18
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.17
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.17
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.16
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.16
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	96.16
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.16
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.15
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.15
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.15
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.14
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.14
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.12
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.11
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.11
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.11
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.1
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.1
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.09
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.09
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.09
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.09
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.09
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.09
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.09
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.08
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.08
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.07
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.07
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.06
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.06
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	96.06
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.06
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.05
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.05
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.05
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.04
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.03
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.02
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.02
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	96.02
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.02
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.02
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	96.02
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.02
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.01
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	96.01
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.01
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.0
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.0
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.0
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	95.99
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	95.99
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.99
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	95.99
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	95.99
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	95.98
3rih_A	293	Short chain dehydrogenase or reductase; structural	95.97
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.96
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	95.95
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	95.95
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.94
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	95.94
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	95.94
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	95.94
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	95.93
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.93
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	95.93
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	95.92
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	95.91
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	95.91
3cxt_A	291	Dehydrogenase with different specificities; rossma	95.91
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	95.89
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	95.89
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	95.87
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	95.87
1xkq_A	280	Short-chain reductase family member (5D234); parra	95.86
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	95.86
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	95.85
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	95.84
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.84
1spx_A	278	Short-chain reductase family member (5L265); paral	95.83
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	95.83
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	95.82
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	95.82
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	95.81
1xq1_A	266	Putative tropinone reducatse; structural genomics,	95.81
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	95.8
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	95.8
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	95.79
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	95.78
1xhl_A	297	Short-chain dehydrogenase/reductase family member	95.76
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	95.74
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	95.74
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.73
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.73
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.71
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	95.71
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	95.71
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.7
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	95.67
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.67
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	95.67
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	95.66
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	95.66
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.65
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	95.65
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.65
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.63
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	95.63
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.63
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	95.62
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	95.62
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	95.61
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.61
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.6
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.6
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	95.6
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	95.59
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	95.59
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	95.59
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.59
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	95.59
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.58
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	95.57
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.56
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.55
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	95.54
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.54
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	95.53
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	95.52
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	95.52
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.52
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	95.52
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.51
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	95.5
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	95.5
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	95.49
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	95.48
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.47
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	95.46
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	95.45
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	95.44
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	95.44
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	95.44
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	95.44
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.44
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	95.43
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	95.43
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.43
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	95.42
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.42
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	95.42
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.41
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.41
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.41
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	95.39
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.39
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	95.37
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.36
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	95.36
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.35
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	95.34
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	95.34
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	95.33
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	95.32
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	95.31
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	95.3
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	95.3
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.3
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	95.3
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	95.29
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	95.28
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	95.27
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	95.27
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.26
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	95.25
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.24
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.24
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.22
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.22
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	95.22
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	95.22
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	95.22
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	95.21
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	95.21
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	95.19
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	95.17
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	95.17
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	95.16
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.15
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.14
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.14
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.13
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	95.13
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	95.11
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.1
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.1
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	95.09
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.09
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.06
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	95.05
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	95.05
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	95.05
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	95.02
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	95.02
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	95.01
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	95.01
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	95.01
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.99
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	94.98
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	94.97
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	94.97
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	94.96
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	94.96
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	94.95
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.94
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	94.94
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	94.93
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	94.92
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.92
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	94.88
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	94.87
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.86
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.86
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	94.85
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	94.83
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	94.83
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	94.81
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	94.81
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.81
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	94.8
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	94.79
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	94.79
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	94.78
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	94.78
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	94.77
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	94.77
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	94.75
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	94.75
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	94.75
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.75
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	94.75
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	94.73
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	94.73
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	94.73
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.72
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	94.71
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.71
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	94.7
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	94.69
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	94.68
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	94.65
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	94.65
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	94.65
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.64
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	94.63
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	94.62
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	94.61
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	94.59
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	94.59
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	94.58
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.57
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	94.55
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	94.55
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	94.51
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.51
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	94.49
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	94.49
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	94.48
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	94.47
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	94.47
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	94.46
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	94.45
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	94.45
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	94.42
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	94.41
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.41
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	94.39
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	94.36
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	94.36
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.35
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	94.33
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	94.33
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.33
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	94.31
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.31
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	94.31
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.28
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	94.27
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	94.26
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	94.26
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	94.26
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.23
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	94.22
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	94.2
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	94.17
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	94.17
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	94.15
4had_A	350	Probable oxidoreductase protein; structural genomi	94.14
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	94.13
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	94.08
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.08
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.06
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.05
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	94.03
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	94.01
1ydw_A	362	AX110P-like protein; structural genomics, protein	93.98
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	93.98
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	93.98
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	93.97
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	93.9
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	93.87
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	93.86
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	93.85
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.85
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	93.83
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	93.82
4hb9_A	412	Similarities with probable monooxygenase; flavin,	93.78
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	93.73
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	93.73
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	93.72
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	93.69
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	93.67
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.64
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	93.64
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	93.63
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	93.61
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	93.6
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	93.57
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	93.55
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	93.52
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	93.52
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	93.52
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	93.51
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	93.5
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.49
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	93.49
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.46
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	93.44
1xq6_A	253	Unknown protein; structural genomics, protein stru	93.43
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	93.43
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	93.38
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	93.34
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	93.33
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.31
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	93.29
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	93.27
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	93.26
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	93.22
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	93.22
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.18
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.18
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	93.16
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	93.09
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	93.06
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	93.05
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	93.04

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=100.00  E-value=3e-96  Score=794.98  Aligned_cols=435  Identities=71%  Similarity=1.082  Sum_probs=382.9

Q ss_pred             CCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 011136           21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER  100 (493)
Q Consensus        21 ~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~  100 (493)
                      +++|+|||||+++|+++++.++++..+.|+|+||||+|+|.++++.++++.+++...+|+|||+|+++|||.++.++++|
T Consensus         2 ~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRvD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   81 (523)
T 2o7s_A            2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENER   81 (523)
T ss_dssp             CSCCEEEEEECCSSHHHHHHHHHHHHHHTCSEEEEEGGGCSSCCHHHHHHHHHHHCSSCEEEECCBGGGTSSBCSCHHHH
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHHhhhcCCCEEEEEEecccccChHHHHHHHHhcCCCcEEEEecccccCCCCCCCHHHH
Confidence            57999999999999999999999877889999999999998876667898888888999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHh
Q 011136          101 VDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDIT  180 (493)
Q Consensus       101 ~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~~  180 (493)
                      +++|++++++||||||||++.+++.++.+...+..++|||+|||||++||++++|.++|++|.++||||||+|+||++.+
T Consensus        82 ~~ll~~~~~~~~~yiDvEl~~~~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~~~~~~~~~~~~gaDivKia~~a~~~~  161 (523)
T 2o7s_A           82 RDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIA  161 (523)
T ss_dssp             HHHHHHHHHHTCSEEEEEHHHHHHHHHHTTTCCCTTCEEEEEEECSSCCCCHHHHHHHHHHHHTTTCSEEEEEEECSSGG
T ss_pred             HHHHHHHHHhCCCEEEEECCCchHHHHHHHHhccCCCEEEEEcccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHH
Confidence            99999999999999999999999888887765556899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhhccccCCCceEEEeec
Q 011136          181 DVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG  260 (493)
Q Consensus       181 D~~~l~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~~~~~~~~~~~~~viG  260 (493)
                      |++++++++.+.+.|+|+||||+.|++||+++++|||++||++++...++||||+++++++++|++.+++++|++|||+|
T Consensus       162 D~~~l~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lt~~~l~~~~~sApGQ~~~~~l~~~~~~~~~~~~~~~~~viG  241 (523)
T 2o7s_A          162 DVARMFHITSKAQVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG  241 (523)
T ss_dssp             GHHHHHHHHHHCSSCEEEEEESGGGTHHHHCTTTTTCSEEECBSSTTCCSSTTCCBHHHHHHTSCGGGCCTTCEEEEEEE
T ss_pred             HHHHHHHHHhhcCCCEEEEEcCCCCchhhhhhhhcCCceeecCCCccccCCCCCCcHHHHHHHHhhhhccccceEEEEEC
Confidence            99999999888889999999999999999999999999999999865558999999999999999999999999999999


Q ss_pred             CCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEE
Q 011136          261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIR  340 (493)
Q Consensus       261 ~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~  340 (493)
                      +||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|.|+|||||||++|++++|++++.|+.+||||||++
T Consensus       242 ~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~i~~~ld~~~~~A~~iGAvNti~~  321 (523)
T 2o7s_A          242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILR  321 (523)
T ss_dssp             SSCTTCCHHHHHHHHHHHTTCSEEEEEEECSCHHHHHHHTCSTTEEEEEECTTCHHHHHHHCSEECHHHHHHTCCSEEEE
T ss_pred             CCccCCccHHHHHHHHHHcCCCcEEEeEEcchHHHHHHHHhcCCCCEEEECCCCHHHHHHHhcccCHHHHHhCCCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eccCCeEEEEeccHHHHHHHHHhhhcccCCCCC--CcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 011136          341 RQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSG--GVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESL  418 (493)
Q Consensus       341 ~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~--~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~  418 (493)
                      +..+|+++|+||||.||+.+|++.+...++...  .....+++|+++|+|+||+|++++++|++.|++|+|+||+.++++
T Consensus       322 ~~~~gk~~g~nTD~~G~~~~l~~~~~~~~~~~~~~~~~~~l~~k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~~a~  401 (523)
T 2o7s_A          322 RKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERAL  401 (523)
T ss_dssp             CTTTCCEEEECCHHHHHHHHHHHHC-------------------CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHHHHH
T ss_pred             ecCCCeEEEEcCCHHHHHHHHHHhhhhccccccccccccccCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            622789999999999999999875321000000  001246788999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCch
Q 011136          419 TFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHL  464 (493)
Q Consensus       419 ~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~  464 (493)
                      ++++.++...         ..+.+++...+.+.++++|+||+|+.|
T Consensus       402 ~la~~~~~~~---------~~~~dl~~~~~~~~DilVN~agvg~~~  438 (523)
T 2o7s_A          402 ELAEAIGGKA---------LSLTDLDNYHPEDGMVLANTTSMGMQP  438 (523)
T ss_dssp             HHHHHTTC-C---------EETTTTTTC--CCSEEEEECSSTTCTT
T ss_pred             HHHHHcCCce---------eeHHHhhhccccCceEEEECCCCCCCC
Confidence            9998874211         111222221124579999999999975

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=3.1e-55  Score=433.07  Aligned_cols=233  Identities=28%  Similarity=0.363  Sum_probs=211.8

Q ss_pred             cccccccCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc----hhHHHHHHhhC-CCcEEEEecc
Q 011136           12 SKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP----RENIKTLIKES-PVPTLFTYRP   86 (493)
Q Consensus        12 ~~~~~~~~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~----~~~l~~l~~~~-~~PiI~T~R~   86 (493)
                      .|++..++.+++|+|||||+++|+++++.+++++.+.|+|+||||+|+|.+.++    .++++.+|+.. ++|+|||+|+
T Consensus         8 ~~v~~~~~g~~~p~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt   87 (257)
T 2yr1_A            8 IKVRNIWIGGTEPCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEIPILFTIRS   87 (257)
T ss_dssp             EEETTEEESSSSCEEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHSSSCCEEEECCC
T ss_pred             EEEeeeeeCCCCcEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeecccccCcHHHHHHHHHHHHHhccCCCEEEEEee
Confidence            467777888999999999999999999999999888899999999999987654    23566777776 8999999999


Q ss_pred             CCCCCCC-CCCHHHHHHHHHHHHHhC-CcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHH
Q 011136           87 IWEGGQY-DGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQ  163 (493)
Q Consensus        87 ~~eGG~~-~~~~~~~~~ll~~~l~~~-~dyIDIEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~  163 (493)
                      ++|||.+ ..++++|++++++++++| |||||||+..++ .++++.. ++++++|||+|||||++||+.++|.++|++|+
T Consensus        88 ~~eGG~~~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~~-~~~~l~~~~~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~  166 (257)
T 2yr1_A           88 EREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGE-RIADVRRMTEECSVWLVVSRHYFDGTPRKETLLADMRQAE  166 (257)
T ss_dssp             TTTTCCCCSSCHHHHHHHHHHHHHHTCCSEEEEEGGGTT-HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEECCCCh-hHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHHHHHH
Confidence            9999999 999999999999999999 999999999887 6666663 45789999999999999999999999999999


Q ss_pred             HcCCCEEEEEeecCCHhHHHHHHHHhcc----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHh
Q 011136          164 ASGADIVKFATTALDITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD  239 (493)
Q Consensus       164 ~~gaDIvKia~~a~s~~D~~~l~~~~~~----~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~  239 (493)
                      ++||||+|+|+||++.+|++++++++.+    .+.|+|+||||+.|++||+++++|||++||+++++  ++||||+++++
T Consensus       167 ~~gaDivKia~~a~s~~D~l~ll~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~Tf~~l~~--~sAPGQl~~~e  244 (257)
T 2yr1_A          167 RYGADIAKVAVMPKSPEDVLVLLQATEEARRELAIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQ--SSAPGQIPIDD  244 (257)
T ss_dssp             HTTCSEEEEEECCSSHHHHHHHHHHHHHHHHHCSSCEEEEECTTTTHHHHHHGGGGTBCEEECBSSS--CSSTTCCBHHH
T ss_pred             hcCCCEEEEEeccCCHHHHHHHHHHHHHHhccCCCCEEEEECCCCcchHHHHHHHhCCceEecCCCC--CCCCCCCCHHH
Confidence            9999999999999999999999998754    36899999999999999999999999999999985  59999999999


Q ss_pred             HHHHhhcc
Q 011136          240 LLDLYNFR  247 (493)
Q Consensus       240 l~~~~~~~  247 (493)
                      ++++++..
T Consensus       245 l~~~l~~l  252 (257)
T 2yr1_A          245 VRTVLSIL  252 (257)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998843

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=100.00  E-value=1.5e-55  Score=438.87  Aligned_cols=234  Identities=28%  Similarity=0.427  Sum_probs=213.3

Q ss_pred             cccccccCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc----hhHHHHHHhhC-CCcEEEEecc
Q 011136           12 SKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP----RENIKTLIKES-PVPTLFTYRP   86 (493)
Q Consensus        12 ~~~~~~~~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~----~~~l~~l~~~~-~~PiI~T~R~   86 (493)
                      .|+..-++...+|+|||||+++|+++++.+++++...|+|+||||+|+|.+.++    .++++.+|+.. .+|+|||+|+
T Consensus        28 v~v~~~~~g~g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt  107 (276)
T 3o1n_A           28 VTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRS  107 (276)
T ss_dssp             EEETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCCSSCEEEECCB
T ss_pred             EEECCEEeCCCCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccccCcHHHHHHHHHHHHHhcCCCCEEEEEEE
Confidence            346666777889999999999999999999999866899999999999997654    24566677766 8999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHH
Q 011136           87 IWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA  164 (493)
Q Consensus        87 ~~eGG~~~~~~~~~~~ll~~~l~~~-~dyIDIEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~  164 (493)
                      ++|||.++.++++|+++++.++++| |||||||+..+++.++++.. ++++++|||+|||||++||+.++|.++|++|++
T Consensus       108 ~~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~  187 (276)
T 3o1n_A          108 AKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQE  187 (276)
T ss_dssp             GGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHH
T ss_pred             hhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECcCCHHHHHHHHHHHHhCCCEEEEEeecCCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999 99999999999988888874 457899999999999999999999999999999


Q ss_pred             cCCCEEEEEeecCCHhHHHHHHHHhcc-----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHh
Q 011136          165 SGADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD  239 (493)
Q Consensus       165 ~gaDIvKia~~a~s~~D~~~l~~~~~~-----~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~  239 (493)
                      +||||+|||+||++.+||++|++++.+     .+.|+|+||||+.|++||+++++|||++||+++++  ++||||+++++
T Consensus       188 ~GaDIvKia~~a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~GS~vTf~~l~~--~sAPGQl~~~~  265 (276)
T 3o1n_A          188 LGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKK--ASAPGAISVAD  265 (276)
T ss_dssp             TTCSEEEEEECCSSHHHHHHHHHHHHHHHHHTCCSCCEEEECSGGGTHHHHCHHHHTCCEEECBSSC--CSSTTCCBHHH
T ss_pred             cCCCEEEEEecCCChHHHHHHHHHHHHHHhcCCCCCEEEEECCCchhhHHHHHHHhCCceEecCCCC--CCCCCCCCHHH
Confidence            999999999999999999999998654     57899999999999999999999999999999976  59999999999


Q ss_pred             HHHHhhcc
Q 011136          240 LLDLYNFR  247 (493)
Q Consensus       240 l~~~~~~~  247 (493)
                      ++++++..
T Consensus       266 l~~~l~~l  273 (276)
T 3o1n_A          266 LRTVLTIL  273 (276)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998753

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=100.00  E-value=2.6e-55  Score=433.81  Aligned_cols=235  Identities=30%  Similarity=0.467  Sum_probs=209.5

Q ss_pred             cccccccCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch----hHHHHHHhhC-CCcEEEEecc
Q 011136           12 SKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR----ENIKTLIKES-PVPTLFTYRP   86 (493)
Q Consensus        12 ~~~~~~~~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~----~~l~~l~~~~-~~PiI~T~R~   86 (493)
                      .|+..-+++..+|+|||||+++|.++++.+++++...|+|+||||+|+|.+.++.    +++..+++.. ++|+|||+|+
T Consensus         8 v~v~~~~ig~g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt   87 (258)
T 4h3d_A            8 VQVKNITIGEGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPLLFTFRS   87 (258)
T ss_dssp             EEETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCTTSCEEEECCC
T ss_pred             EEEcCEEeCCCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccccccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            3455556667799999999999999999999998889999999999999887543    3445555544 7999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHH
Q 011136           87 IWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA  164 (493)
Q Consensus        87 ~~eGG~~~~~~~~~~~ll~~~l~~~-~dyIDIEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~  164 (493)
                      ++|||.++.++++|+++++.+++.+ +||||||+..+++.++++.. ++++++|||+|||||++||+++++.+++.+|.+
T Consensus        88 ~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI~S~Hdf~~TP~~~el~~~~~~~~~  167 (258)
T 4h3d_A           88 VVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQE  167 (258)
T ss_dssp             GGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHH
T ss_pred             hhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999988 99999999999998888874 467899999999999999999999999999999


Q ss_pred             cCCCEEEEEeecCCHhHHHHHHHHhcc-----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHh
Q 011136          165 SGADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD  239 (493)
Q Consensus       165 ~gaDIvKia~~a~s~~D~~~l~~~~~~-----~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~  239 (493)
                      +||||+|+|+||++.+|+++|++++.+     .+.|+|+||||+.|++||+++++|||++||+++++  ++||||+++++
T Consensus       168 ~gaDIvKia~~~~~~~D~l~Ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~fGS~lTf~~~~~--~sAPGQl~~~e  245 (258)
T 4h3d_A          168 LGADLPKIAVMPQNEKDVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKS--VSAPGQISFKE  245 (258)
T ss_dssp             TTCSEEEEEECCSSHHHHHHHHHHHHHHHHHTCSSCBEEEECTGGGGGGGTCHHHHCBCEEECBCC-----CTTCCBHHH
T ss_pred             hCCCEEEEEEccCCHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChHHHHHHHHhCCceEeccCCC--CCCCCCCCHHH
Confidence            999999999999999999999998643     37899999999999999999999999999999986  49999999999


Q ss_pred             HHHHhhccc
Q 011136          240 LLDLYNFRQ  248 (493)
Q Consensus       240 l~~~~~~~~  248 (493)
                      +++++++.+
T Consensus       246 l~~~l~lL~  254 (258)
T 4h3d_A          246 LNSVLNLLH  254 (258)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998643

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=100.00  E-value=8.7e-55  Score=425.56  Aligned_cols=223  Identities=26%  Similarity=0.396  Sum_probs=197.4

Q ss_pred             CCcEEEEeecC-CCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc---hhHHHHHHhhC-CCcEEEEeccCCCCCCCCCC
Q 011136           22 NPTLICVPIMG-ESVDKMVVDMGKANASGADLVEIRLDGLKNFNP---RENIKTLIKES-PVPTLFTYRPIWEGGQYDGD   96 (493)
Q Consensus        22 ~~~~Icv~l~~-~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~---~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~   96 (493)
                      .+|+||+||++ +|.++++.+++.+.+.|+|+||||+|+|.+.+.   .++++.+|+.. ++|+|||+|+++|||.++.+
T Consensus         2 ~~p~Icvpi~~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~   81 (238)
T 1sfl_A            2 THVEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFT   81 (238)
T ss_dssp             -CCEEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTTSTTCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCC
T ss_pred             CCCeEEEEecCCCCHHHHHHHHHHhhhcCCCEEEEEecccccCCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCC
Confidence            47899999999 999999999999888899999999999987643   23455566655 79999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-CCcEEEEEccc--ccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136           97 ENERVDVLRLAMEL-GADYIDVELQV--AREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus        97 ~~~~~~ll~~~l~~-~~dyIDIEl~~--~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      +++|++++++++++ +|||||||+..  +++..+++.. ++++++|||+|||||++||+.++|.++|++|+++||||+|+
T Consensus        82 ~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~~~el~~~~~~~~~~gaDivKi  161 (238)
T 1sfl_A           82 NDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKL  161 (238)
T ss_dssp             HHHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEccCCCChHHHHHHHHHHHhcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence            99999999999998 59999999999  8877777763 45789999999999999999999999999999999999999


Q ss_pred             EeecCCHhHHHHHHHHhcc----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhhc
Q 011136          173 ATTALDITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (493)
Q Consensus       173 a~~a~s~~D~~~l~~~~~~----~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~~  246 (493)
                      |+||++.+||+++++++.+    .+.|+|+||||+.|++||+++++|||++||+++++  ++||||++++++++++++
T Consensus       162 a~~a~~~~D~l~ll~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tf~~l~~--~sAPGQl~~~el~~~l~~  237 (238)
T 1sfl_A          162 AVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGE--PQAPGQIDVTDLKAQVTL  237 (238)
T ss_dssp             EECCSSHHHHHHHHHHHHHHHHHCSSEEEEEECTGGGHHHHHTGGGGTBCEEEEBSSC--CSSTTCCBHHHHHHHHTT
T ss_pred             EecCCCHHHHHHHHHHHHHHhhcCCCCEEEEECCCCchHHHHHHHHhCCCeeecCCCC--CCCCCCCCHHHHHHHHHh
Confidence            9999999999999998754    47899999999999999999999999999999986  499999999999999863

>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans}

Probab=100.00  E-value=3.5e-53  Score=417.50  Aligned_cols=232  Identities=25%  Similarity=0.374  Sum_probs=188.5

Q ss_pred             cccccccccc----ccCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHh-hCCCcEE
Q 011136            7 LVASGSKLVS----GGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK-ESPVPTL   81 (493)
Q Consensus         7 ~~~~~~~~~~----~~~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~-~~~~PiI   81 (493)
                      ||.-|+...|    -++.+++|+|||||+++|.+|++ ++......|+|+||||+|+|.+.+..+....+++ ..++|+|
T Consensus        14 ~~~~~~~~~~~~~~~~~g~g~pkIcvpl~~~t~~e~~-~~~~~~~~gaD~VElRvD~l~~~~~~~v~~~l~~~~~~~PiI   92 (259)
T 3l9c_A           14 LVPRGSHMASMTGGQQMGRGSMKIVVPVMPQNIEEAN-QLDLTRIDSTDIIEWRADYLVKDDILTVAPAIFEKFSGHEVI   92 (259)
T ss_dssp             SSCC----------------CCEEEEEECCSSHHHHH-HCCCTTCCTTCEEEEEGGGSCGGGHHHHHHHHHHHTTTSEEE
T ss_pred             cCcCcchhhhhcCCcEECCCCcEEEEEecCCCHHHHH-HHHHhhccCCCEEEEEeccccchhHHHHHHHHHHhcCCCcEE
Confidence            4555555444    35778899999999999999997 5555556799999999999985332333344554 3589999


Q ss_pred             EEeccCCCCCCCCCCHHHHHHHHHHHHH-hCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHH
Q 011136           82 FTYRPIWEGGQYDGDENERVDVLRLAME-LGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVA  160 (493)
Q Consensus        82 ~T~R~~~eGG~~~~~~~~~~~ll~~~l~-~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~  160 (493)
                      ||+|+++|||.++.++++|+++|+.+++ .+|||||||+..+++.++++.    +.+|||+|||||++||+  +|.++|+
T Consensus        93 ~T~Rt~~EGG~~~~~~~~y~~ll~~~~~~~~~dyIDVEl~~~~~~~~~l~----~~~kiI~S~Hdf~~tp~--el~~~~~  166 (259)
T 3l9c_A           93 FTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMY----DFSNLILSYHNFEETPE--NLMEVFS  166 (259)
T ss_dssp             EECCBGGGTCSBCCCHHHHHHHHHHHHHHHCCSEEEEEHHHHGGGGGGGT----TCSSEEEEEEESSCCCT--THHHHHH
T ss_pred             EEEeehhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECcCCHHHHHHHH----hcCeEEEEeccCCCCHH--HHHHHHH
Confidence            9999999999999999999999999998 789999999999988887774    45599999999999998  8999999


Q ss_pred             HHHHcCCCEEEEEeecCCHhHHHHHHHHhcc-----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCC
Q 011136          161 RIQASGADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQP  235 (493)
Q Consensus       161 ~~~~~gaDIvKia~~a~s~~D~~~l~~~~~~-----~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~  235 (493)
                      +|+++||||+|||+||++.+||++|++++.+     .+.|+|+||||+.|++||+++++|||++||+++++  ++||||+
T Consensus       167 ~~~~~GaDIvKia~~a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~GS~lTf~~l~~--~sAPGQl  244 (259)
T 3l9c_A          167 ELTALAPRVVKIAVMPKNEQDVLDLMNYTRGFKTLNPNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQ--ESAPGQI  244 (259)
T ss_dssp             HHHHTCCSEEEEEECCSSHHHHHHHHHHHHHHHHHCTTSEEEEEECTGGGHHHHHTHHHHTBSEEECBC---------CC
T ss_pred             HHHHcCCCEEEEEecCCCHHHHHHHHHHHHHHHhccCCCCEEEEECCCCcccHHHHHHHhCCccccccCCC--CCCCCCC
Confidence            9999999999999999999999999999753     36899999999999999999999999999999986  4999999


Q ss_pred             CHHhHHHHhhcc
Q 011136          236 TIKDLLDLYNFR  247 (493)
Q Consensus       236 ~i~~l~~~~~~~  247 (493)
                      ++++++++++..
T Consensus       245 ~~~el~~~l~~l  256 (259)
T 3l9c_A          245 SLADMRKIKEVL  256 (259)
T ss_dssp             BHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999999854

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1}

Probab=100.00  E-value=4.8e-53  Score=411.23  Aligned_cols=218  Identities=25%  Similarity=0.334  Sum_probs=186.8

Q ss_pred             CCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-CC-CcEEEEeccCCCCCCCCCCHH
Q 011136           21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SP-VPTLFTYRPIWEGGQYDGDEN   98 (493)
Q Consensus        21 ~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~~-~PiI~T~R~~~eGG~~~~~~~   98 (493)
                      .|+|+|||||+++|.++++.+++++ ..++|+||||+|+|.+.+ .+.+...++. .. +|+|||+|+++|||.++.+++
T Consensus         1 ~~~~~Icvpi~~~t~~e~~~~~~~~-~~~~D~vElRvD~l~~~~-~~~v~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~   78 (231)
T 2ocz_A            1 SNAMRIVAPVMPRHFDEAQAIDISK-YEDVNLIEWRADFLPKDE-IVAVAPAIFEKFAGKEIIFTLRTVQEGGNITLSSQ   78 (231)
T ss_dssp             --CCEEEEEECCSSHHHHHTCCGGG-GTTCSEEEEEGGGSCGGG-HHHHHHHHHHHTTTSEEEEECCBGGGTCSBCCCHH
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHHHh-ccCCCEEEEEeccccccC-HHHHHHHHHHHcCCCcEEEEEeecccCCCCCCCHH
Confidence            3789999999999999999999886 458999999999998654 3334433222 33 899999999999999999999


Q ss_pred             HHHHHHHHHHHhC-CcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Q 011136           99 ERVDVLRLAMELG-ADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL  177 (493)
Q Consensus        99 ~~~~ll~~~l~~~-~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~  177 (493)
                      +|++++++++++| |||||||+..++++++.+   + +.+|||+|||||++||  ++|.++|++|+++||||+|+|+||+
T Consensus        79 ~~~~ll~~~~~~g~~d~iDvEl~~~~~~i~~~---~-~~~kvI~S~Hdf~~tp--~el~~~~~~~~~~gaDivKia~~a~  152 (231)
T 2ocz_A           79 EYVDIIKEINAIYNPDYIDFEYFTHKSVFQEM---L-DFPNLILSYHNFEETP--ENLMEAFSEMTKLAPRVVKIAVMPQ  152 (231)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEETTTTGGGGGGG---T-TCSSEEEEEEESSCCC--TTHHHHHHHHHHTCCSEEEEEECCS
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCCCHHHHHHh---h-cCCeEEEEecCCCCCH--HHHHHHHHHHHHcCCCEEEEEeecC
Confidence            9999999999999 999999999987765443   3 3499999999999999  8999999999999999999999999


Q ss_pred             CHhHHHHHHHHhcc-----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhhccc
Q 011136          178 DITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ  248 (493)
Q Consensus       178 s~~D~~~l~~~~~~-----~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~~~~  248 (493)
                      +.+|++++++++.+     .+.|+|+||||+.|++||+++++|||++||++++.  ++||||++++++++++++.+
T Consensus       153 ~~~D~l~ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~Tf~~l~~--~sAPGQl~~~el~~~l~~l~  226 (231)
T 2ocz_A          153 SEQDVLDLMNYTRGFKTLNPEQEFATISMGKLGRLSRFAGDVIGSSWTYVSLDH--VSGPGQVTLNDMKRIIEVLE  226 (231)
T ss_dssp             SHHHHHHHHHHHHHHHHHCTTCEEEEEECHHHHGGGGGCHHHHTCCEEECBC--------CCCBHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCchhHHHHHHHhCCceEeccCCC--CCCCCCCCHHHHHHHHHHhh
Confidence            99999999998653     36799999999999999999999999999999976  49999999999999988554

>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A

Probab=100.00  E-value=8.6e-51  Score=392.48  Aligned_cols=210  Identities=29%  Similarity=0.415  Sum_probs=183.9

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch---hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHH
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERV  101 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~  101 (493)
                      +||+||+++|.++++.+++.   .|+|+||||+|+|.+.+..   ++++.+|+. .+|+|||+|+++|||.   ++++|+
T Consensus         2 ~icv~l~~~~~~~~~~~~~~---~~~D~vElRvD~l~~~~~~~v~~~~~~lr~~-~~PiI~T~R~~~eGG~---~~~~~~   74 (219)
T 2egz_A            2 LIAVPLDDTNFSENLKKAKE---KGADIVELRVDQFSDTSLNYVKEKLEEVHSQ-GLKTILTIRSPEEGGR---EVKNRE   74 (219)
T ss_dssp             EEEEEECSTTHHHHHHHHHH---HTCSEEEEEGGGCSCCCHHHHHHHHHHHHHT-TCEEEEECCCGGGTCC---CCTTHH
T ss_pred             EEEEEeCCCCHHHHHHHHHH---cCCCEEEEEeccccccCHHHHHHHHHHHHhc-CCcEEEEEeehhccCC---CHHHHH
Confidence            59999999999999888765   3899999999999876542   456666665 7999999999999998   678899


Q ss_pred             HHHHHHHHhCCcEEEEEccccc--chhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 011136          102 DVLRLAMELGADYIDVELQVAR--EFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI  179 (493)
Q Consensus       102 ~ll~~~l~~~~dyIDIEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~  179 (493)
                      +++++++++ +||||||+..++  +.+.++.  +..++|||+|||||++||+.++|.++|++|+++|| |+|+|+||++.
T Consensus        75 ~ll~~~~~~-~d~iDvEl~~~~~~~~l~~~~--~~~g~kvI~S~Hdf~~tp~~~el~~~~~~~~~~ga-ivKia~~a~~~  150 (219)
T 2egz_A           75 ELFEELSPL-SDYTDIELSSRGLLVKLYNIT--KEAGKKLIISYHNFELTPPNWIIREVLREGYRYGG-IPKIAVKANSY  150 (219)
T ss_dssp             HHHHHHTTT-SSEEEEETTCHHHHHHHHHHH--HHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTS-EEEEEEECSSH
T ss_pred             HHHHHHHhc-CCEEEEEccCCccHHHHHHHH--HHcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCC-EEEEEEccCCH
Confidence            999999999 999999999851  2222222  34568999999999999999999999999999998 99999999999


Q ss_pred             hHHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhhcc
Q 011136          180 TDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR  247 (493)
Q Consensus       180 ~D~~~l~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~~~  247 (493)
                      +|++++++++.+.+.|+|+||||+.|++||++|++|||++||+++++  ++||||+++++++++++..
T Consensus       151 ~D~l~ll~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tf~~l~~--~sAPGQl~~~el~~~l~~l  216 (219)
T 2egz_A          151 EDVARLLCISRQVEGEKILISMGDYGKISRLAGYVFGSVITYCSLEK--AFAPGQIPLEEMVELRKKF  216 (219)
T ss_dssp             HHHHHHHHHHTTSCSCBEEEEESSGGGGHHHHGGGGTBCEEECBCC-----CTTCCBHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCCcchhHHHHHHHhCCceEecCCCC--CCCCCCCCHHHHHHHHHHh
Confidence            99999999998888999999999999999999999999999999975  5999999999999999854

>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus}

Probab=100.00  E-value=9.3e-49  Score=371.79  Aligned_cols=192  Identities=28%  Similarity=0.439  Sum_probs=176.4

Q ss_pred             EEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 011136           27 CVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRL  106 (493)
Q Consensus        27 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~  106 (493)
                      +|||+++|.++ +++++.     +|+||||+|+|.+.        +| ...+|+|||+|+++|||.++.++++|++++++
T Consensus         2 ~vpl~~~t~~~-~~~~~~-----aD~vElRvD~l~~~--------lr-~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   66 (196)
T 2ox1_A            2 KLVATLSSPEE-LELAEK-----ADVVELRIDLFDFS--------GA-RVDKEKILTCRRVSDGGKFEGDERERIEKMKR   66 (196)
T ss_dssp             EEEEEECSHHH-HHHTTT-----CSEEEEETTTSCCT--------TS-CCCSEEEEECCBGGGTSSBCSCHHHHHHHHHH
T ss_pred             eeeEcCCCHHH-HHHHhc-----CCEEEEEEchhhhh--------HH-hcCCcEEEEEeecccCCCCCCCHHHHHHHHHH
Confidence            69999999999 877653     89999999999753        33 56799999999999999999999999999999


Q ss_pred             HHHhCC-cEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHH
Q 011136          107 AMELGA-DYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARV  185 (493)
Q Consensus       107 ~l~~~~-dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~~D~~~l  185 (493)
                      ++++|+ ||||||+..+++.+       ++++|||+|||||++||+++++.++|+  +++| ||+|+|+||++.+|++++
T Consensus        67 ~~~~g~~d~iDvEl~~~~~~i-------~~~~kvI~S~Hdf~~tp~~~~l~~~~~--~~~g-DivKia~~a~~~~D~l~l  136 (196)
T 2ox1_A           67 AFDSLNPDYVDLESDLPDSAF-------DFNCRIIESYHNFIRTPDYSELKGIVE--GRRG-DLVKIATMGKSKRDVETI  136 (196)
T ss_dssp             HHHHHCCSEEEEETTSCGGGC-------CCSSEEEEEEEESSCCCCHHHHHHHHH--TCCS-SEEEEEEECCSHHHHHHH
T ss_pred             HHHhCCCcEEEEECCCCHhHH-------hCCCEEEEEecCCCCCcCHHHHHHHHH--HHcC-CEEEEEEcCCCHHHHHHH
Confidence            999997 99999999887753       278999999999999999999999999  8899 999999999999999999


Q ss_pred             HHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhhc
Q 011136          186 FQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (493)
Q Consensus       186 ~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~~  246 (493)
                      ++++.+.+ |+|+||||+.|++||+++++|||++||+++++  ++||||+++++++++++.
T Consensus       137 l~~~~~~~-p~I~~~MG~~G~~SRi~~~~~gs~~t~~~~~~--~sAPGQl~~~el~~~l~~  194 (196)
T 2ox1_A          137 VRILTNYD-DVVAFLMGERFSFTRVLAAYLGSPFIYCYVGS--PKAPGQISLDDAREIISR  194 (196)
T ss_dssp             HHHHHHCS-SEEEEEESGGGTHHHHHHHHTTCSEEEEESSS--CSSTTCCBHHHHHHHHHH
T ss_pred             HHHHhhCC-CeEEEEcCCCchhHHHhHhhhCCceEeccCCC--CCCCCCCCHHHHHHHHHH
Confidence            99987765 99999999999999999999999999999965  499999999999999874

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=100.00  E-value=8.2e-49  Score=397.15  Aligned_cols=221  Identities=26%  Similarity=0.341  Sum_probs=180.1

Q ss_pred             cccCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhh
Q 011136          247 RQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDE  324 (493)
Q Consensus       247 ~~~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~  324 (493)
                      ..++++|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++|+++++.++.++|+|+|||||||++|++++|+
T Consensus        25 ~~i~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~  104 (312)
T 3t4e_A           25 MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDE  104 (312)
T ss_dssp             -----CCEEEEEEESCCTTCSHHHHHHHHHHHHTCSEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTSHHHHGGGCSE
T ss_pred             cccCCCceEEEEECCCccccccHHHHHHHHHHcCCCcEEEeEecCHHHHHHHHHHHhhCCCCEEEECchhHHHHHHHhhh
Confidence            35678899999999999999999999999999999999999998  4899999999999999999999999999999999


Q ss_pred             hcHHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCC
Q 011136          325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG  404 (493)
Q Consensus       325 ~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g  404 (493)
                      +|+.|+.+||||||+++  +|+|+||||||.||+.+|++.           +.++++|+++|+|+||+||+++++|++.|
T Consensus       105 ls~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-----------~~~l~gk~~lVlGAGGaaraia~~L~~~G  171 (312)
T 3t4e_A          105 LTPAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-----------GFDMRGKTMVLLGAGGAATAIGAQAAIEG  171 (312)
T ss_dssp             ECHHHHHHTCCSEEEEE--TTEEEEECHHHHHHHHHHHHT-----------TCCCTTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             cCHHHHHhCceeEEEec--CCEEEEeCCcHHHHHHHHHhc-----------CCCcCCCEEEEECcCHHHHHHHHHHHHcC
Confidence            99999999999999987  999999999999999999763           15678999999999999999999999999


Q ss_pred             C-eEEEEeCC---hHHHHHHHHHhhhhhhcccccceEEEEeeccccc----CCceEEEEeccccCCchhhHhhhhhHHHH
Q 011136          405 A-RVVIANRT---YGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTW----HLKFFIAANIIHLGNHLEWVTAAFNLFFY  476 (493)
Q Consensus       405 ~-~i~v~~R~---~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~----~~~~~i~~n~tplG~~~~~~~~~~~~~~~  476 (493)
                      + +|+|+||+   .+++++|++.+....-     ..+.+....+..|    ..+++|++|+||+||.|..- .+......
T Consensus       172 ~~~v~v~nRt~~~~~~a~~la~~~~~~~~-----~~v~~~~~~~l~~~~~~l~~~DiIINaTp~Gm~~~~~-~~~~~~~~  245 (312)
T 3t4e_A          172 IKEIKLFNRKDDFFEKAVAFAKRVNENTD-----CVVTVTDLADQHAFTEALASADILTNGTKVGMKPLEN-ESLIGDVS  245 (312)
T ss_dssp             CSEEEEEECSSTHHHHHHHHHHHHHHHSS-----CEEEEEETTCHHHHHHHHHHCSEEEECSSTTSTTSTT-CCSCCCGG
T ss_pred             CCEEEEEECCCchHHHHHHHHHHhhhccC-----cceEEechHhhhhhHhhccCceEEEECCcCCCCCCCC-CcccCCHH
Confidence            9 99999999   9999999998875321     1223322111101    14679999999999976431 11100111


Q ss_pred             hhccceEeee
Q 011136          477 LTCNSYVVME  486 (493)
Q Consensus       477 ~~~~~~~~~~  486 (493)
                      .+-++.+|+|
T Consensus       246 ~l~~~~~v~D  255 (312)
T 3t4e_A          246 LLRPELLVTE  255 (312)
T ss_dssp             GSCTTCEEEE
T ss_pred             HcCCCCEEEE
Confidence            2235678887

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=1.4e-48  Score=390.29  Aligned_cols=208  Identities=23%  Similarity=0.303  Sum_probs=178.5

Q ss_pred             CCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcH
Q 011136          250 GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDT  327 (493)
Q Consensus       250 ~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~  327 (493)
                      +++|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++|.++++.++.++|.|+|||||||+++++++|++|+
T Consensus         2 s~~t~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~v~~l~~~~~~G~nVTiP~K~~v~~~ld~ls~   81 (282)
T 3fbt_A            2 SLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCGGLNVTIPYKVEVMKELYEISE   81 (282)
T ss_dssp             -CCCEEEEEEESSCCCCHHHHHHHHHHHHHTCCEEEEEEECCGGGHHHHHHHHHHTTCCEEEECTTCTTGGGGGCSEECH
T ss_pred             CCcceEEEEECCCccccchHHHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhcCH
Confidence            56799999999999999999999999999999999999998  5899999999889999999999999999999999999


Q ss_pred             HHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-e
Q 011136          328 VAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R  406 (493)
Q Consensus       328 ~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~  406 (493)
                      .|+.+||||||+++  +|+|+||||||.||+.+|++.           +.++++++++|+|+||+||+++++|.+.|+ +
T Consensus        82 ~A~~iGAVNTv~~~--~g~l~G~NTD~~G~~~~L~~~-----------~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~  148 (282)
T 3fbt_A           82 KARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSKF-----------RVEIKNNICVVLGSGGAARAVLQYLKDNFAKD  148 (282)
T ss_dssp             HHHHHTCCCEEEEC--SSCEEEECCHHHHHHHHHHHT-----------TCCCTTSEEEEECSSTTHHHHHHHHHHTTCSE
T ss_pred             HHHHcCCcceEEee--CCEEEeeCCcHHHHHHHHHHc-----------CCCccCCEEEEECCcHHHHHHHHHHHHcCCCE
Confidence            99999999999988  899999999999999999763           146789999999999999999999999999 9


Q ss_pred             EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136          407 VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       407 i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      |+|+|||.+|+++|++.+....           +.++.+ .  +++|++|+||+||.|+.-.+++...+  +-++.+|+|
T Consensus       149 v~v~nRt~~ka~~La~~~~~~~-----------~~~l~~-l--~~DivInaTp~Gm~~~~~~~pi~~~~--l~~~~~v~D  212 (282)
T 3fbt_A          149 IYVVTRNPEKTSEIYGEFKVIS-----------YDELSN-L--KGDVIINCTPKGMYPKEGESPVDKEV--VAKFSSAVD  212 (282)
T ss_dssp             EEEEESCHHHHHHHCTTSEEEE-----------HHHHTT-C--CCSEEEECSSTTSTTSTTCCSSCHHH--HTTCSEEEE
T ss_pred             EEEEeCCHHHHHHHHHhcCccc-----------HHHHHh-c--cCCEEEECCccCccCCCccCCCCHHH--cCCCCEEEE
Confidence            9999999999999988663211           123333 2  68999999999998763112222222  235678887

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=100.00  E-value=3.8e-48  Score=387.91  Aligned_cols=215  Identities=23%  Similarity=0.293  Sum_probs=180.4

Q ss_pred             CceEEEeecCCccccccHHHHHHHHHHcCCCceeeccc-------cccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhh
Q 011136          252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL-------VDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDE  324 (493)
Q Consensus       252 ~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~-------~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~  324 (493)
                      +|++|||||+||+||+||.|||++|+++|+|+.|.+++       .++|+++++.++.++|.|+|||||||+++++++|+
T Consensus         3 ~t~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~   82 (283)
T 3jyo_A            3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE   82 (283)
T ss_dssp             CCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEETTSTTTTTCCHHHHHHHHHHTTCCEEEECTTCTTTTGGGSSE
T ss_pred             CceEEEEECCCccccccHHHHHHHHHHcCCCeEEEEEEccccCCCHHHHHHHHHHHhhCCCCEEEECcccHHHHHHHhhh
Confidence            58999999999999999999999999999999999994       35899999999999999999999999999999999


Q ss_pred             hcHHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCC
Q 011136          325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG  404 (493)
Q Consensus       325 ~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g  404 (493)
                      +|+.|+.+||||||++++ +|+|+||||||.||+.+|++..           ..+++|+++|+|+||+|++++++|++.|
T Consensus        83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~~-----------~~l~~k~vlVlGaGG~g~aia~~L~~~G  150 (283)
T 3jyo_A           83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEGL-----------PNAKLDSVVQVGAGGVGNAVAYALVTHG  150 (283)
T ss_dssp             ECHHHHHHTCCCEEEECT-TSCEEEECHHHHHHHHHHHHHC-----------TTCCCSEEEEECCSHHHHHHHHHHHHTT
T ss_pred             CCHHHHHhCcceEEEECC-CCeEEEecCCHHHHHHHHHHhC-----------cCcCCCEEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999999863 7899999999999999998642           4578999999999999999999999999


Q ss_pred             C-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEe--ecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccc
Q 011136          405 A-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIR--ILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNS  481 (493)
Q Consensus       405 ~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~--~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~  481 (493)
                      + +|+|+||+.++++++++.+......    ..+.+..  ++.+.. .+++|++|+||+||.++. ..++.  ...+-++
T Consensus       151 ~~~v~i~~R~~~~a~~la~~~~~~~~~----~~i~~~~~~~l~~~l-~~~DiVInaTp~Gm~~~~-~~pi~--~~~l~~~  222 (283)
T 3jyo_A          151 VQKLQVADLDTSRAQALADVINNAVGR----EAVVGVDARGIEDVI-AAADGVVNATPMGMPAHP-GTAFD--VSCLTKD  222 (283)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHHHTS----CCEEEECSTTHHHHH-HHSSEEEECSSTTSTTSC-SCSSC--GGGCCTT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhhcCC----ceEEEcCHHHHHHHH-hcCCEEEECCCCCCCCCC-CCCCC--HHHhCCC
Confidence            9 8999999999999999988754311    1233332  332222 468999999999999762 11221  1222456


Q ss_pred             eEeee
Q 011136          482 YVVME  486 (493)
Q Consensus       482 ~~~~~  486 (493)
                      .+|+|
T Consensus       223 ~~v~D  227 (283)
T 3jyo_A          223 HWVGD  227 (283)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            78877

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=100.00  E-value=5.8e-47  Score=378.91  Aligned_cols=213  Identities=21%  Similarity=0.311  Sum_probs=177.0

Q ss_pred             CCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcH
Q 011136          250 GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDT  327 (493)
Q Consensus       250 ~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~  327 (493)
                      ..++++|+|||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|+|+|||||||+++++++|++++
T Consensus         5 ~~~m~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~ld~l~~   84 (281)
T 3o8q_A            5 ASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTE   84 (281)
T ss_dssp             ---CEEEEEECCSSSCCCHHHHHHHHHHHTTCCEEEEEECCCTTCHHHHHHHHHHTTCCEEEECTTSHHHHHHHCSEECH
T ss_pred             cccccEEEEECCCCCccCcHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECCccHHHHHHHHhhcCH
Confidence            45578999999999999999999999999999999999998  5899999999889999999999999999999999999


Q ss_pred             HHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-e
Q 011136          328 VAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R  406 (493)
Q Consensus       328 ~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~  406 (493)
                      .|+.+||||||++++ +|+|+||||||.||+.+|++.           +.++++++++|+|+||+|++++++|.+.|+ +
T Consensus        85 ~A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~L~~~-----------~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~  152 (281)
T 3o8q_A           85 RARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLLAQ-----------QVLLKGATILLIGAGGAARGVLKPLLDQQPAS  152 (281)
T ss_dssp             HHHHHTCCSEEEECT-TSCEEEECCHHHHHHHHHHHT-----------TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSE
T ss_pred             HHHhhCeeeEEEEcC-CCcEEEEecHHHHHHHHHHHh-----------CCCccCCEEEEECchHHHHHHHHHHHhcCCCe
Confidence            999999999999742 899999999999999999752           156789999999999999999999999998 9


Q ss_pred             EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136          407 VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       407 i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      |+|+||+.++++++++.+....       .+.+. +++ .++.+++|++|+||.||.++..  .+.  ...+-++.+|+|
T Consensus       153 v~v~~R~~~~a~~la~~~~~~~-------~~~~~-~~~-~l~~~aDiIInaTp~gm~~~~~--~l~--~~~l~~~~~V~D  219 (281)
T 3o8q_A          153 ITVTNRTFAKAEQLAELVAAYG-------EVKAQ-AFE-QLKQSYDVIINSTSASLDGELP--AID--PVIFSSRSVCYD  219 (281)
T ss_dssp             EEEEESSHHHHHHHHHHHGGGS-------CEEEE-EGG-GCCSCEEEEEECSCCCC----C--SCC--GGGEEEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHhhccC-------CeeEe-eHH-HhcCCCCEEEEcCcCCCCCCCC--CCC--HHHhCcCCEEEE
Confidence            9999999999999999887432       12222 222 2337899999999999986531  111  122346778887


Q ss_pred             c
Q 011136          487 K  487 (493)
Q Consensus       487 ~  487 (493)
                      -
T Consensus       220 l  220 (281)
T 3o8q_A          220 M  220 (281)
T ss_dssp             S
T ss_pred             e
Confidence            4

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=100.00  E-value=1.8e-47  Score=387.86  Aligned_cols=219  Identities=24%  Similarity=0.357  Sum_probs=182.8

Q ss_pred             ccCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhh
Q 011136          248 QMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEV  325 (493)
Q Consensus       248 ~~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~  325 (493)
                      .++++|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++|+++++.++.++|.|+|||||||+++++++|++
T Consensus        32 ~i~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~Gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~l  111 (315)
T 3tnl_A           32 RITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKL  111 (315)
T ss_dssp             CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCCEEEEEEECCHHHHHHHHHHHHHTTCCEEEECTTSTTTGGGGCSEE
T ss_pred             hcCCcccEEEEECCCccccccHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHhc
Confidence            4678899999999999999999999999999999999999988  48999999999899999999999999999999999


Q ss_pred             cHHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC
Q 011136          326 DTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA  405 (493)
Q Consensus       326 ~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~  405 (493)
                      |+.|+.+||||||+++  +|+|+||||||.||+++|++.           +..+++|+++|+|+||+|++++++|++.|+
T Consensus       112 s~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-----------~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga  178 (315)
T 3tnl_A          112 SPAAELVGAVNTVVND--DGVLTGHITDGTGYMRALKEA-----------GHDIIGKKMTICGAGGAATAICIQAALDGV  178 (315)
T ss_dssp             CHHHHHHTCCSEEEEE--TTEEEEECCHHHHHHHHHHHT-----------TCCCTTSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CHHHHHhCccceEEec--CCEEEEeCCCHHHHHHHHHHc-----------CCCccCCEEEEECCChHHHHHHHHHHHCCC
Confidence            9999999999999987  999999999999999999762           156789999999999999999999999999


Q ss_pred             -eEEEEeCC---hHHHHHHHHHhhhhhhcccccceEEEEeeccc--cc---CCceEEEEeccccCCchhhHhhhhhHHHH
Q 011136          406 -RVVIANRT---YGESLTFLRLMSWLLLNTLLFDSVIVIRILLF--TW---HLKFFIAANIIHLGNHLEWVTAAFNLFFY  476 (493)
Q Consensus       406 -~i~v~~R~---~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~--~~---~~~~~i~~n~tplG~~~~~~~~~~~~~~~  476 (493)
                       +|+|+||+   .++++++++.+.....     ..+.+. ++++  .|   ..+++|++|+||+||.|+.-..+.. ...
T Consensus       179 ~~V~i~nR~~~~~~~a~~la~~~~~~~~-----~~~~~~-~~~~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~-~~~  251 (315)
T 3tnl_A          179 KEISIFNRKDDFYANAEKTVEKINSKTD-----CKAQLF-DIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLP-SAD  251 (315)
T ss_dssp             SEEEEEECSSTTHHHHHHHHHHHHHHSS-----CEEEEE-ETTCHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCC-CGG
T ss_pred             CEEEEEECCCchHHHHHHHHHHhhhhcC-----CceEEe-ccchHHHHHhhhcCCCEEEECccCCCCCCCCCCCCC-cHH
Confidence             99999999   9999999998765321     122322 1111  11   1468999999999999762111110 111


Q ss_pred             hhccceEeee
Q 011136          477 LTCNSYVVME  486 (493)
Q Consensus       477 ~~~~~~~~~~  486 (493)
                      .+-++.+|+|
T Consensus       252 ~l~~~~~V~D  261 (315)
T 3tnl_A          252 MLRPELIVSD  261 (315)
T ss_dssp             GCCTTCEEEE
T ss_pred             HcCCCCEEEE
Confidence            2235678877

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=100.00  E-value=4.9e-47  Score=377.78  Aligned_cols=207  Identities=20%  Similarity=0.253  Sum_probs=176.0

Q ss_pred             eEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHH
Q 011136          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (493)
Q Consensus       254 ~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  331 (493)
                      .+|+|||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|+|+|||||||+++++++|++|+.|+.
T Consensus         3 ~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~   82 (272)
T 3pwz_A            3 DRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNITAPFKLRAFELADRRSERAQL   82 (272)
T ss_dssp             EEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             cEEEEECCCcCCcccHHHHHHHHHHcCCCcEEEEEEcCHHHHHHHHHHHhhCCCCEEEECchhHHHHHHHHhhCCHHHHH
Confidence            4899999999999999999999999999999999988  58999999998899999999999999999999999999999


Q ss_pred             hcceeeEEEeccCCeEEEEeccHHHHHHH-HHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eEEE
Q 011136          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISA-IEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVI  409 (493)
Q Consensus       332 igAvNti~~~~~~g~l~G~NTD~~G~~~~-l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v  409 (493)
                      +||||||+++  +|+|+||||||.||+++ |++.           +.++++|+++|+|+||+|++++++|.+.|+ +|+|
T Consensus        83 iGAvNTv~~~--~g~l~G~NTD~~G~~~~lL~~~-----------~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i  149 (272)
T 3pwz_A           83 ARAANALKFE--DGRIVAENFDGIGLLRDIEENL-----------GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVI  149 (272)
T ss_dssp             HTCCSEEEEE--TTEEEEECCHHHHHHHHHHTTS-----------CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEE
T ss_pred             hCccceEEcc--CCeEEEecCCHHHHHHHHHHHc-----------CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEE
Confidence            9999999887  89999999999999999 7541           256789999999999999999999999998 9999


Q ss_pred             EeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccC-CceEEEEeccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          410 ANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWH-LKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       410 ~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      +||+.+++++|++.+.. .       .+.+. +.+ .++ .+++|++|+||.||+++..  .+.  ...+-++.+|+|-
T Consensus       150 ~~R~~~~a~~la~~~~~-~-------~~~~~-~~~-~l~~~~~DivInaTp~gm~~~~~--~i~--~~~l~~~~~V~Dl  214 (272)
T 3pwz_A          150 ANRDMAKALALRNELDH-S-------RLRIS-RYE-ALEGQSFDIVVNATSASLTADLP--PLP--ADVLGEAALAYEL  214 (272)
T ss_dssp             ECSCHHHHHHHHHHHCC-T-------TEEEE-CSG-GGTTCCCSEEEECSSGGGGTCCC--CCC--GGGGTTCSEEEES
T ss_pred             EeCCHHHHHHHHHHhcc-C-------CeeEe-eHH-HhcccCCCEEEECCCCCCCCCCC--CCC--HHHhCcCCEEEEe
Confidence            99999999999998764 1       12221 111 122 5789999999999986531  111  1122467788883

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=100.00  E-value=1.3e-47  Score=380.36  Aligned_cols=201  Identities=27%  Similarity=0.385  Sum_probs=172.4

Q ss_pred             CceEEEeecCCccccccHHHHHHHH----HHcCCCceeeccccccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcH
Q 011136          252 DTKVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDT  327 (493)
Q Consensus       252 ~~~~~~viG~pi~hS~SP~ihn~~f----~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~  327 (493)
                      +|++|+|||+||+||+||.|||++|    +++|+|+.|.++++++++++++.++.++|.|+|||||||+++++++|++|+
T Consensus         2 k~~~~~viG~Pi~hS~SP~~hn~~f~~~~~~~gl~~~Y~~~~v~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~   81 (269)
T 3phh_A            2 KLKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCDKIKG   81 (269)
T ss_dssp             CEEEEEEEESSCTTCCHHHHHHHHHHHHHHHHSSEEEEEEEECCSSSCHHHHHHHTTEEEEEECTTCHHHHHHHSSEECG
T ss_pred             CceEEEEECCCccccccHHHHHHHHHHHHHHcCCCCEEeeEEhhhHHHHHHHHhhCCCCEEEEccccHHHHHHHHhhcCH
Confidence            5789999999999999999999999    999999999999999999999999889999999999999999999999999


Q ss_pred             HHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeE
Q 011136          328 VAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARV  407 (493)
Q Consensus       328 ~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i  407 (493)
                      .|+.+||||||+++  +|+|+||||||.||+.+|++ .            .  +++++|||+||+||+++++|.+.|.+|
T Consensus        82 ~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~-~------------~--~k~vlvlGaGGaaraia~~L~~~G~~v  144 (269)
T 3phh_A           82 IALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQ-K------------N--YQNALILGAGGSAKALACELKKQGLQV  144 (269)
T ss_dssp             GGGGTTCCCEEEEE--TTEEEEECCHHHHHHHHCC------------------CCEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred             HHHHhCceeEEEee--CCEEEEecChHHHHHHHHHH-c------------C--CCEEEEECCCHHHHHHHHHHHHCCCEE
Confidence            99999999999987  99999999999999999753 1            1  789999999999999999999999999


Q ss_pred             EEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHH--HHhhccceEee
Q 011136          408 VIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLF--FYLTCNSYVVM  485 (493)
Q Consensus       408 ~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~--~~~~~~~~~~~  485 (493)
                      +|+||+.+|+++|+ .++...            .+. +.++ +++|++|+||.||+++.   .+...  ...+-++.+|.
T Consensus       145 ~V~nRt~~ka~~la-~~~~~~------------~~~-~~l~-~~DiVInaTp~Gm~~~~---~l~~~~l~~~l~~~~~v~  206 (269)
T 3phh_A          145 SVLNRSSRGLDFFQ-RLGCDC------------FME-PPKS-AFDLIINATSASLHNEL---PLNKEVLKGYFKEGKLAY  206 (269)
T ss_dssp             EEECSSCTTHHHHH-HHTCEE------------ESS-CCSS-CCSEEEECCTTCCCCSC---SSCHHHHHHHHHHCSEEE
T ss_pred             EEEeCCHHHHHHHH-HCCCeE------------ecH-HHhc-cCCEEEEcccCCCCCCC---CCChHHHHhhCCCCCEEE
Confidence            99999999999999 665211            111 2232 78999999999998762   12211  11223577888


Q ss_pred             ec
Q 011136          486 EK  487 (493)
Q Consensus       486 ~~  487 (493)
                      |-
T Consensus       207 D~  208 (269)
T 3phh_A          207 DL  208 (269)
T ss_dssp             ES
T ss_pred             Ee
Confidence            83

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=100.00  E-value=8.7e-48  Score=383.90  Aligned_cols=205  Identities=26%  Similarity=0.409  Sum_probs=168.6

Q ss_pred             EEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHHh
Q 011136          255 VFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSI  332 (493)
Q Consensus       255 ~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~i  332 (493)
                      .|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|+|+|||||||+++++++|++|+.|+.+
T Consensus         2 ~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~i   81 (277)
T 3don_A            2 KFAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIPHKERIIPYLDDINEQAKSV   81 (277)
T ss_dssp             EEEEEESSCTTCCHHHHHHHHHHHTTCCCEEEEEECCGGGGGGHHHHHHHTTCSEEEECTTCTTTTGGGCSEECHHHHHH
T ss_pred             EEEEECCCccccccHHHHHHHHHHcCcCcEEEEEEcCHHHHHHHHHHHhhCCCCEEEECcCCHHHHHHHhhhCCHHHHHh
Confidence            599999999999999999999999999999999998  589999999998999999999999999999999999999999


Q ss_pred             cceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEe
Q 011136          333 GAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIAN  411 (493)
Q Consensus       333 gAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~  411 (493)
                      ||||||+++  +|+|+||||||.||+++|++..           .++++++++|+|+||+|++++++|.+.|+ +|+|+|
T Consensus        82 GAVNTv~~~--~g~l~G~NTD~~G~~~~L~~~~-----------~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~  148 (277)
T 3don_A           82 GAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIY-----------EGIEDAYILILGAGGASKGIANELYKIVRPTLTVAN  148 (277)
T ss_dssp             TCCCEEEEE--TTEEEEECCHHHHHHHHHHHHS-----------TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEEC
T ss_pred             CceeEEEec--CCEEEEECChHHHHHHHHHHhC-----------CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            999999998  9999999999999999998631           45778999999999999999999999999 999999


Q ss_pred             CChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          412 RTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       412 R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      |+.++++++++.+....           +.++. .+..+++|++|+||.||.++.-. .+  ....+-++.+|+|-
T Consensus       149 R~~~~a~~la~~~~~~~-----------~~~~~-~~~~~aDiVInaTp~Gm~~~~~~-~l--~~~~l~~~~~V~D~  209 (277)
T 3don_A          149 RTMSRFNNWSLNINKIN-----------LSHAE-SHLDEFDIIINTTPAGMNGNTDS-VI--SLNRLASHTLVSDI  209 (277)
T ss_dssp             SCGGGGTTCCSCCEEEC-----------HHHHH-HTGGGCSEEEECCC-------CC-SS--CCTTCCSSCEEEES
T ss_pred             CCHHHHHHHHHhccccc-----------HhhHH-HHhcCCCEEEECccCCCCCCCcC-CC--CHHHcCCCCEEEEe
Confidence            99999998875322111           12222 22367899999999999876311 11  12223467788884

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=2.2e-45  Score=365.72  Aligned_cols=187  Identities=24%  Similarity=0.376  Sum_probs=167.3

Q ss_pred             cCCCceE-EEeecCCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcH
Q 011136          249 MGPDTKV-FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDT  327 (493)
Q Consensus       249 ~~~~~~~-~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~  327 (493)
                      ++++|++ |+|||+|  ||+||.|||++|+++|+|+.|.+++.++++++++.++..+|.|+|||||||++|++++|++++
T Consensus         2 i~~~t~~~~~viG~P--hS~SP~~hn~~~~~~gl~~~Y~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~i~~~~d~~~~   79 (271)
T 1npy_A            2 INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHP   79 (271)
T ss_dssp             CCTTCEEEEEECSSC--CSHHHHHHHHHHHHHTCCEEEEEECCSCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEECH
T ss_pred             cCCCceEEEEEECCC--CcccHHHHHHHHHHcCCCcEEEeechhhHHHHHHHhccCCCCeEEECcCCHHHHHHHHHHhhH
Confidence            5678899 9999999  999999999999999999999999988999999999888999999999999999999999999


Q ss_pred             HHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-e
Q 011136          328 VAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R  406 (493)
Q Consensus       328 ~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~  406 (493)
                      .|+.+||||||+++  +|+|+||||||.||..+|++. .          .. .+++++|||+||+||+++++|.+.|+ +
T Consensus        80 ~A~~iGAvNTi~~~--~g~l~g~NTD~~G~~~~l~~~-~----------~~-~~~~vlvlGaGgaarav~~~L~~~G~~~  145 (271)
T 1npy_A           80 SAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKY-H----------LN-KNAKVIVHGSGGMAKAVVAAFKNSGFEK  145 (271)
T ss_dssp             HHHTTTCCCEEEEE--TTEEEEECHHHHHHHHHHHHT-T----------CC-TTSCEEEECSSTTHHHHHHHHHHTTCCC
T ss_pred             HHHHhCCCCceECc--CCEEEeecCCHHHHHHHHHHh-C----------CC-CCCEEEEECCcHHHHHHHHHHHHCCCCE
Confidence            99999999999987  999999999999999999762 1          22 46899999999999999999999998 9


Q ss_pred             EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchh
Q 011136          407 VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLE  465 (493)
Q Consensus       407 i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~  465 (493)
                      |+|+|||.+|+++|++.++..+.           .++.   ..+++|++|+||.||.++
T Consensus       146 i~v~nRt~~ka~~la~~~~~~~~-----------~~~~---~~~~DivInaTp~gm~~~  190 (271)
T 1npy_A          146 LKIYARNVKTGQYLAALYGYAYI-----------NSLE---NQQADILVNVTSIGMKGG  190 (271)
T ss_dssp             EEEECSCHHHHHHHHHHHTCEEE-----------SCCT---TCCCSEEEECSSTTCTTS
T ss_pred             EEEEeCCHHHHHHHHHHcCCccc-----------hhhh---cccCCEEEECCCCCccCc
Confidence            99999999999999988753110           1111   146899999999999764

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=100.00  E-value=9.3e-46  Score=364.96  Aligned_cols=195  Identities=31%  Similarity=0.418  Sum_probs=165.0

Q ss_pred             eEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHH
Q 011136          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (493)
Q Consensus       254 ~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  331 (493)
                      ++|+|||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++ ++|+|+|||||||+++++++|+ |+.|+.
T Consensus         1 ~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~Y~~~~v~~~~l~~~~~~~~-~~~~G~nVT~P~K~~v~~~~d~-~~~A~~   78 (253)
T 3u62_A            1 MKFCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRIL-EEYDGFNATIPHKERVMRYVEP-SEDAQR   78 (253)
T ss_dssp             CEEEEEESSCTTCSHHHHHHHHHHHHTCCCEEEEEECCGGGHHHHHHHHH-HHCSEEEECTTCTTGGGGGSEE-CHHHHH
T ss_pred             CEEEEECCCccccccHHHHHHHHHHcCCCCEEEeEecCHHHHHHHHHHHh-hCCCceeecCChHHHHHHHhCC-CHHHHH
Confidence            3699999999999999999999999999999999998  48999999999 9999999999999999999999 999999


Q ss_pred             hcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEE
Q 011136          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIA  410 (493)
Q Consensus       332 igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~  410 (493)
                      +||||||++   +   +||||||.||+++|++.             .+++ +++|||+||||++++++|.+.|+ +|+|+
T Consensus        79 iGAvNTi~~---~---~G~NTD~~G~~~~l~~~-------------~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~  138 (253)
T 3u62_A           79 IKAVNCVFR---G---KGYNTDWVGVVKSLEGV-------------EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVV  138 (253)
T ss_dssp             HTCCCEEET---T---EEECCHHHHHHHHTTTC-------------CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred             cCcceEeec---C---EEEcchHHHHHHHHHhc-------------CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEE
Confidence            999999975   2   89999999999998541             3467 89999999999999999999999 99999


Q ss_pred             eCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136          411 NRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       411 ~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      ||+.+++++|++.++...           +.++.+.. .+.+|++|+||.||+|+.  ..+..  ..+-++.+|+|
T Consensus       139 nR~~~ka~~la~~~~~~~-----------~~~~~~~~-~~aDiVInatp~gm~p~~--~~i~~--~~l~~~~~V~D  198 (253)
T 3u62_A          139 NRTIERAKALDFPVKIFS-----------LDQLDEVV-KKAKSLFNTTSVGMKGEE--LPVSD--DSLKNLSLVYD  198 (253)
T ss_dssp             ESCHHHHHTCCSSCEEEE-----------GGGHHHHH-HTCSEEEECSSTTTTSCC--CSCCH--HHHTTCSEEEE
T ss_pred             eCCHHHHHHHHHHcccCC-----------HHHHHhhh-cCCCEEEECCCCCCCCCC--CCCCH--HHhCcCCEEEE
Confidence            999999999987654211           12222222 567999999999999862  22221  12246778887

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=100.00  E-value=3.1e-43  Score=350.37  Aligned_cols=209  Identities=20%  Similarity=0.258  Sum_probs=170.7

Q ss_pred             eEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHH
Q 011136          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (493)
Q Consensus       254 ~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  331 (493)
                      ++|+|||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.+++++|.|+|||||||+++++++|++|+.|+.
T Consensus         2 ~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~~~~~~l~~~i~~~~~~~~~G~nVT~P~K~~v~~~ld~~~~~A~~   81 (272)
T 1p77_A            2 DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAKL   81 (272)
T ss_dssp             EEEEEEESSCTTCCHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             cEEEEECCCcccccCHHHHHHHHHHCCcCeEEEEEEcCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHHhhcCHHHHH
Confidence            5899999999999999999999999999999999998  58999999999899999999999999999999999999999


Q ss_pred             hcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEe
Q 011136          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN  411 (493)
Q Consensus       332 igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~  411 (493)
                      +||||||+++ ++|+|+||||||.||+.+|++.           +.++++++++|+|+||+|++++++|.+.|.+|+|+|
T Consensus        82 igavNti~~~-~~g~l~g~NTD~~G~~~~L~~~-----------~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~  149 (272)
T 1p77_A           82 AEACNTLKKL-DDGKLYADNTDGIGLVTDLQRL-----------NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLAN  149 (272)
T ss_dssp             HTCCSEEEEC-TTSCEEEECCHHHHHHHHHHHT-----------TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEE
T ss_pred             hCCceEEEEc-cCCEEEEecCCHHHHHHHHHHh-----------CCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence            9999999983 2899999999999999999762           145778999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhhhhhhcccccceEEEEeecccccC-CceEEEEeccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          412 RTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWH-LKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       412 R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      |+.++++++++.++...       .+.+ .+++ ... .+.+|++|+||.|+.++..  +....  ..-++.+|+|-
T Consensus       150 R~~~~a~~l~~~~~~~~-------~~~~-~~~~-~~~~~~~DivIn~t~~~~~~~~~--~i~~~--~l~~~~~v~D~  213 (272)
T 1p77_A          150 RTFSKTKELAERFQPYG-------NIQA-VSMD-SIPLQTYDLVINATSAGLSGGTA--SVDAE--ILKLGSAFYDM  213 (272)
T ss_dssp             SSHHHHHHHHHHHGGGS-------CEEE-EEGG-GCCCSCCSEEEECCCC---------CCCHH--HHHHCSCEEES
T ss_pred             CCHHHHHHHHHHccccC-------CeEE-eeHH-HhccCCCCEEEECCCCCCCCCCC--CCCHH--HcCCCCEEEEe
Confidence            99999999998876421       1111 1221 222 3689999999999986421  11111  11346677774

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.8e-42  Score=349.16  Aligned_cols=224  Identities=31%  Similarity=0.439  Sum_probs=180.4

Q ss_pred             HhhccccCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhh
Q 011136          243 LYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVK  320 (493)
Q Consensus       243 ~~~~~~~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~  320 (493)
                      -|++.+++..|++|+|+|+|++||+||.|||++|+++|+|+.|.++++  +++.++++.+++.++.|+|||||||++|++
T Consensus        13 ~~~~~~~~~~t~~~~viG~pi~hS~Sp~~hn~~~~~~Gl~~~Y~~~~~~~~~l~~~v~~l~~~~~~G~nVTiP~K~~i~~   92 (297)
T 2egg_A           13 GENLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVTIPHKLAVIP   92 (297)
T ss_dssp             -------CCCCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCTTCHHHHHHHHHHHTCCEEEECTTCTTTTGG
T ss_pred             cccceecCCceeEEEEECCCcccccCHHHHHHHHHHcCcCcEEEEEEcCHHHHHHHHHHHhhCCCCeEEECCcCHHHHHH
Confidence            477889999999999999999999999999999999999999999998  589999999988899999999999999999


Q ss_pred             hhhhhcHHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHH
Q 011136          321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGA  400 (493)
Q Consensus       321 ~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L  400 (493)
                      ++|++++.|+.+|||||++++  +|+|+|+|||+.||..+|++..          ...+++++++|+|+||+|++++++|
T Consensus        93 ~ld~~~~~A~~iGavNti~~~--~g~l~g~nTd~~G~~~~l~~~~----------~~~l~~~~vlVlGaGg~g~aia~~L  160 (297)
T 2egg_A           93 FLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALEEEM----------NITLDGKRILVIGAGGGARGIYFSL  160 (297)
T ss_dssp             GCSEECHHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHHT----------TCCCTTCEEEEECCSHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhCCCCeEECc--CCeEeeccCCHHHHHHHHHHhC----------CCCCCCCEEEEECcHHHHHHHHHHH
Confidence            999999999999999999987  8999999999999999997631          0346789999999999999999999


Q ss_pred             HhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhc
Q 011136          401 KAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTC  479 (493)
Q Consensus       401 ~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~  479 (493)
                      .+.|+ +|+|+||+.++++++++.++...      ..+..+.++.+.. .+.+|++|+||.|+.++.-...+.  ...+-
T Consensus       161 ~~~G~~~V~v~nR~~~ka~~la~~~~~~~------~~~~~~~~~~~~~-~~aDivIn~t~~~~~~~~~~~~i~--~~~l~  231 (297)
T 2egg_A          161 LSTAAERIDMANRTVEKAERLVREGDERR------SAYFSLAEAETRL-AEYDIIINTTSVGMHPRVEVQPLS--LERLR  231 (297)
T ss_dssp             HTTTCSEEEEECSSHHHHHHHHHHSCSSS------CCEECHHHHHHTG-GGCSEEEECSCTTCSSCCSCCSSC--CTTCC
T ss_pred             HHCCCCEEEEEeCCHHHHHHHHHHhhhcc------CceeeHHHHHhhh-ccCCEEEECCCCCCCCCCCCCCCC--HHHcC
Confidence            99998 99999999999999998875311      0111112333333 568999999999998642000000  11123


Q ss_pred             cceEeeec
Q 011136          480 NSYVVMEK  487 (493)
Q Consensus       480 ~~~~~~~~  487 (493)
                      ++.+|+|-
T Consensus       232 ~~~~v~D~  239 (297)
T 2egg_A          232 PGVIVSDI  239 (297)
T ss_dssp             TTCEEEEC
T ss_pred             CCCEEEEc
Confidence            57788874

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=1.1e-41  Score=338.89  Aligned_cols=191  Identities=27%  Similarity=0.389  Sum_probs=167.0

Q ss_pred             eEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHH
Q 011136          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (493)
Q Consensus       254 ~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  331 (493)
                      ++|+|||+||+||+||.|||++|+++|+++.|.++++  ++|.++++.+++++|.|+|||||||+++++++|++|+.|+.
T Consensus         2 ~~~~viG~pi~hS~Sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nVT~P~K~~~~~~ld~~~~~A~~   81 (271)
T 1nyt_A            2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAAL   81 (271)
T ss_dssp             CSEEEEESSCTTCSHHHHHHHHHHHHTCCCCEEEEECCTTCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             CEEEEECCCcccccCHHHHHHHHHHCCCCcEEEEEEcCHHHHHHHHHHHHhCCCCeEEEccCCHHHHHHHHhhcCHHHHH
Confidence            5799999999999999999999999999999999998  58999999999899999999999999999999999999999


Q ss_pred             hcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEe
Q 011136          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN  411 (493)
Q Consensus       332 igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~  411 (493)
                      +|||||++++ .+|+|+||||||.||+.+|++. .          .++++++++|+|+||+|++++++|.+.|++|+|+|
T Consensus        82 igavNti~~~-~~g~l~G~ntD~~G~~~~L~~~-~----------~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~  149 (271)
T 1nyt_A           82 AGAVNTLMRL-EDGRLLGDNTDGVGLLSDLERL-S----------FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITN  149 (271)
T ss_dssp             HTCCSEEEEC-TTSCEEEECCHHHHHHHHHHHH-T----------CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             hCCceEEEEc-CCCeEEEeCCCHHHHHHHHHhc-C----------cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEE
Confidence            9999999983 2899999999999999999763 1          45678999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhhhhhhcccccceEEEEeecccccC-CceEEEEeccccCCchh
Q 011136          412 RTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWH-LKFFIAANIIHLGNHLE  465 (493)
Q Consensus       412 R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~i~~n~tplG~~~~  465 (493)
                      |+.++++++++.++...       .+.+ .+. +... .+.+|++|+||.|+.++
T Consensus       150 R~~~~~~~la~~~~~~~-------~~~~-~~~-~~~~~~~~DivVn~t~~~~~~~  195 (271)
T 1nyt_A          150 RTVSRAEELAKLFAHTG-------SIQA-LSM-DELEGHEFDLIINATSSGISGD  195 (271)
T ss_dssp             SSHHHHHHHHHHTGGGS-------SEEE-CCS-GGGTTCCCSEEEECCSCGGGTC
T ss_pred             CCHHHHHHHHHHhhccC-------CeeE-ecH-HHhccCCCCEEEECCCCCCCCC
Confidence            99999999998876421       1111 111 1121 46899999999999853

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=7.1e-40  Score=328.35  Aligned_cols=200  Identities=36%  Similarity=0.491  Sum_probs=172.0

Q ss_pred             cCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhc
Q 011136          249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (493)
Q Consensus       249 ~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  326 (493)
                      ++++|++|+|+|+|++||+||.|||++|+++|+++.|.++++  ++|.++++.++.++|.|+|||||||+++++++|+++
T Consensus         7 ~~~~~~~~~viG~pi~hS~Sp~~h~~~~~~~gi~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nVtiP~k~~i~~~~d~~~   86 (287)
T 1nvt_A            7 INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEID   86 (287)
T ss_dssp             CCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSEEC
T ss_pred             hcCCccEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEEcCHHHHHHHHHHHHhCCCCEEEEccCCHHHHHHHHHhcC
Confidence            567789999999999999999999999999999999999998  689999999988899999999999999999999999


Q ss_pred             HHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCe
Q 011136          327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR  406 (493)
Q Consensus       327 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~  406 (493)
                      +.|+.+|||||++++  +|+|+|+|||+.||+.+|++..           .++++++++|+|+||+|++++++|++.| +
T Consensus        87 ~~a~~igavnt~~~~--~g~l~g~nTd~~G~~~~L~~~~-----------~~l~~k~vlV~GaGgiG~aia~~L~~~G-~  152 (287)
T 1nvt_A           87 KDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEEI-----------GRVKDKNIVIYGAGGAARAVAFELAKDN-N  152 (287)
T ss_dssp             HHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHHH-----------CCCCSCEEEEECCSHHHHHHHHHHTSSS-E
T ss_pred             HHHHHhCceeeEEee--CCEEEEecCCHHHHHHHHHHhC-----------CCcCCCEEEEECchHHHHHHHHHHHHCC-C
Confidence            999999999999987  8999999999999999998631           4577899999999999999999999999 9


Q ss_pred             EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchh
Q 011136          407 VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLE  465 (493)
Q Consensus       407 i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~  465 (493)
                      |+++||+.++++++++.+........ .-.+.+ .++.+.+ .+.+|++|+||.|+.++
T Consensus       153 V~v~~r~~~~~~~l~~~~~~~~~~~~-~~~~d~-~~~~~~~-~~~DilVn~ag~~~~~~  208 (287)
T 1nvt_A          153 IIIANRTVEKAEALAKEIAEKLNKKF-GEEVKF-SGLDVDL-DGVDIIINATPIGMYPN  208 (287)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHTCCH-HHHEEE-ECTTCCC-TTCCEEEECSCTTCTTC
T ss_pred             EEEEECCHHHHHHHHHHHhhhccccc-ceeEEE-eeHHHhh-CCCCEEEECCCCCCCCC
Confidence            99999999999999988764210000 001111 1223333 67899999999999864

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=100.00  E-value=2e-39  Score=323.34  Aligned_cols=213  Identities=29%  Similarity=0.489  Sum_probs=180.1

Q ss_pred             cccCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhh
Q 011136          247 RQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDE  324 (493)
Q Consensus       247 ~~~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~  324 (493)
                      .+++.+|++||++|+|++||+||.|||++|+++|+++.|.++++  ++|.++++.++.++|.|+|||+|||+++++++|+
T Consensus         6 ~~~~~~t~~~~liG~pi~hs~sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nvtiP~k~~i~~~ld~   85 (275)
T 2hk9_A            6 HMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGINVTVPFKEEIIPLLDY   85 (275)
T ss_dssp             -CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCSEEEEEEECCGGGHHHHHHHHHHHTCCEEEECTTSTTTTGGGCSE
T ss_pred             ccccCCceEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999987  5899999999888999999999999999999999


Q ss_pred             hcHHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCC
Q 011136          325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG  404 (493)
Q Consensus       325 ~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g  404 (493)
                      +++.|+.+|||||++++  +|+++|+|||+.||+.+|++..           .++++++++|||+|++|++++++|.+.|
T Consensus        86 l~~~A~~~gavnti~~~--~g~~~g~nTd~~G~~~~l~~~~-----------~~~~~~~v~iiGaG~~g~aia~~L~~~g  152 (275)
T 2hk9_A           86 VEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKSLKSLI-----------PEVKEKSILVLGAGGASRAVIYALVKEG  152 (275)
T ss_dssp             ECHHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHHC-----------TTGGGSEEEEECCSHHHHHHHHHHHHHT
T ss_pred             hhHHHHHhCCcceEEee--CCEEEeecCCHHHHHHHHHHhC-----------CCcCCCEEEEECchHHHHHHHHHHHHcC
Confidence            99999999999999987  8999999999999999997631           3567899999999999999999999999


Q ss_pred             CeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEe
Q 011136          405 ARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVV  484 (493)
Q Consensus       405 ~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~  484 (493)
                      ++|+++||+.++++++++.++.           .+..++.+.. .+.+|++|+||.|+.++... .+  ....+-++.+|
T Consensus       153 ~~V~v~~r~~~~~~~l~~~~g~-----------~~~~~~~~~~-~~aDiVi~atp~~~~~~~~~-~i--~~~~l~~g~~v  217 (275)
T 2hk9_A          153 AKVFLWNRTKEKAIKLAQKFPL-----------EVVNSPEEVI-DKVQVIVNTTSVGLKDEDPE-IF--NYDLIKKDHVV  217 (275)
T ss_dssp             CEEEEECSSHHHHHHHTTTSCE-----------EECSCGGGTG-GGCSEEEECSSTTSSTTCCC-SS--CGGGCCTTSEE
T ss_pred             CEEEEEECCHHHHHHHHHHcCC-----------eeehhHHhhh-cCCCEEEEeCCCCCCCCCCC-CC--CHHHcCCCCEE
Confidence            9999999999999998876531           1222343333 57899999999999764211 11  11223457788


Q ss_pred             eec
Q 011136          485 MEK  487 (493)
Q Consensus       485 ~~~  487 (493)
                      +|-
T Consensus       218 iDv  220 (275)
T 2hk9_A          218 VDI  220 (275)
T ss_dssp             EES
T ss_pred             EEc
Confidence            774

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=100.00  E-value=4.4e-36  Score=296.83  Aligned_cols=202  Identities=29%  Similarity=0.411  Sum_probs=171.6

Q ss_pred             eEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHH
Q 011136          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (493)
Q Consensus       254 ~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  331 (493)
                      ++|+|+|+|++||+||.|||++|+++|+++.|.++++  +++.++++.++.. +.|+|||+|||+++++++|++++.|+.
T Consensus         2 ~~~~~~G~pi~hs~sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~-~~G~~vt~P~k~~i~~~~~~l~~~a~~   80 (263)
T 2d5c_A            2 LRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-FRGVNLTLPLKEAALAHLDWVSPEAQR   80 (263)
T ss_dssp             EEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGHHHHHHHHHHH-CSEEEECTTCTTGGGGGCSEECHHHHH
T ss_pred             eEEEEECCCcccccCHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHhcccc-CceEEEcccCHHHHHHHHHHHhHHHHH
Confidence            6899999999999999999999999999999999976  5799999998776 999999999999999999999999999


Q ss_pred             hcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEe
Q 011136          332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN  411 (493)
Q Consensus       332 igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~  411 (493)
                      +|++||++++  +|++.|+|||+.|++.+|++.           +.++++ +++|||+|++|++++..|.+.|++|+++|
T Consensus        81 ~gavn~i~~~--~g~~~g~ntd~~g~~~~l~~~-----------~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~  146 (263)
T 2d5c_A           81 IGAVNTVLQV--EGRLFGFNTDAPGFLEALKAG-----------GIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWN  146 (263)
T ss_dssp             HTCCCEEEEE--TTEEEEECCHHHHHHHHHHHT-----------TCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             hCCCCcEEcc--CCeEEEeCCCHHHHHHHHHHh-----------CCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence            9999999987  899999999999999999763           145778 99999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          412 RTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       412 R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      |+.++++++++.++..            ..++.+ . .+.+|++++||.+++++.- ..+.  ...+-++.+|+|-
T Consensus       147 r~~~~~~~l~~~~~~~------------~~~~~~-~-~~~Divi~~tp~~~~~~~~-~~l~--~~~l~~g~~viD~  205 (263)
T 2d5c_A          147 RTPQRALALAEEFGLR------------AVPLEK-A-REARLLVNATRVGLEDPSA-SPLP--AELFPEEGAAVDL  205 (263)
T ss_dssp             SSHHHHHHHHHHHTCE------------ECCGGG-G-GGCSEEEECSSTTTTCTTC-CSSC--GGGSCSSSEEEES
T ss_pred             CCHHHHHHHHHHhccc------------hhhHhh-c-cCCCEEEEccCCCCCCCCC-CCCC--HHHcCCCCEEEEe
Confidence            9999999999876532            133333 3 5789999999999976321 0111  1222457788774

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.93  E-value=3.2e-27  Score=236.14  Aligned_cols=184  Identities=15%  Similarity=0.085  Sum_probs=147.1

Q ss_pred             CCccccccHHHHHHHHH-----HcCCCceeecccc--ccHHHHHHHh-cCCCCCeEEEccCchH-HHhhhhhhhcHHHHH
Q 011136          261 KPVGHSKSPILYNEAFK-----SVGFNGVFVHLLV--DDIAKFFQTY-SSNDFAGFSCTIPHKE-AAVKCCDEVDTVAKS  331 (493)
Q Consensus       261 ~pi~hS~SP~ihn~~f~-----~~gl~~~y~~~~~--~~l~~~~~~l-~~~~~~G~~VT~P~K~-~v~~~~d~~~~~A~~  331 (493)
                      .||.||+||.|||.+|+     .+|+++.|.++++  ++++++++.+ ...+.+|+|+|.|||. ..+..++++.+.++.
T Consensus         2 ~~i~hs~sp~~h~~~~~~~~~~~~g~~~~y~~~~v~~~~~~~~~~~~~~~~~~~g~~~t~~~~~G~~~~~~~~~~~~~~~   81 (287)
T 1lu9_A            2 KKLLFQFDTDATPSVFDVVVGYDGGADHITGYGNVTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKK   81 (287)
T ss_dssp             CCEEEEEESSSSCCHHHHHHHHHTTCSEEEEESSCCTTTHHHHHHHHHSSCCGGGGGGEEEEEECSCHHHHHHHHHHHHH
T ss_pred             CceEEEccCCCCCCchhhheeeccCcceEeccCCcCHHHHHhhhcceEEecCccccccceEEEccchHHHHHHHHHHHHH
Confidence            69999999999999999     5999999999988  6899999985 6788999999999976 455566666666665


Q ss_pred             --hcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEe-cchHHHHHHHHHHhCCCeEE
Q 011136          332 --IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIG-AGGAGKALAYGAKAKGARVV  408 (493)
Q Consensus       332 --igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlG-aGGaara~~~~L~~~g~~i~  408 (493)
                        +||+||++..  +  +.|+|||+.||+.+|++.+.          ..+++|+++|+| +||+|++++++|++.|++|+
T Consensus        82 ~~~gavnt~~~~--~--~~G~nTd~~g~~~~l~~~~~----------~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~  147 (287)
T 1lu9_A           82 RFFGPFRVSCML--D--SNGSNTTAAAGVALVVKAAG----------GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVV  147 (287)
T ss_dssp             HCBTTBCCEEEE--C--STTHHHHHHHHHHHHHHHTT----------SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEE
T ss_pred             hcCCCeEEEEec--C--CCcCCchHHHHHHHHHHhhc----------cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEE
Confidence              4999999876  5  36999999999999976311          346789999999 89999999999999999999


Q ss_pred             EEeCChHHHHHHHHHhhhhhhcccccceEEEEe-----ecccccCCceEEEEeccccCCch
Q 011136          409 IANRTYGESLTFLRLMSWLLLNTLLFDSVIVIR-----ILLFTWHLKFFIAANIIHLGNHL  464 (493)
Q Consensus       409 v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~-----~l~~~~~~~~~i~~n~tplG~~~  464 (493)
                      +++|+.++++++++.+.... . .   .+....     ++.... .+.++++|++|+|+.+
T Consensus       148 i~~R~~~~~~~l~~~~~~~~-~-~---~~~~~D~~~~~~~~~~~-~~~DvlVn~ag~g~~~  202 (287)
T 1lu9_A          148 LCGRKLDKAQAAADSVNKRF-K-V---NVTAAETADDASRAEAV-KGAHFVFTAGAIGLEL  202 (287)
T ss_dssp             EEESSHHHHHHHHHHHHHHH-T-C---CCEEEECCSHHHHHHHT-TTCSEEEECCCTTCCS
T ss_pred             EEECCHHHHHHHHHHHHhcC-C-c---EEEEecCCCHHHHHHHH-HhCCEEEECCCccccC
Confidence            99999999999998775421 0 0   011100     111112 4578999999999875

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=99.92  E-value=1.7e-26  Score=242.60  Aligned_cols=201  Identities=13%  Similarity=0.132  Sum_probs=151.5

Q ss_pred             cccCCCceEEE--eecCCccccccHHHHHHH--HHHc-CCCceeeccccc---cHHHHHHHhcCCCCCeEEE---ccCch
Q 011136          247 RQMGPDTKVFG--IIGKPVGHSKSPILYNEA--FKSV-GFNGVFVHLLVD---DIAKFFQTYSSNDFAGFSC---TIPHK  315 (493)
Q Consensus       247 ~~~~~~~~~~~--viG~pi~hS~SP~ihn~~--f~~~-gl~~~y~~~~~~---~l~~~~~~l~~~~~~G~~V---T~P~K  315 (493)
                      .-++..++++|  ++|.   ||.||.|||++  |+++ |+|+.|.+++++   +|.++++.++ ++|.|+||   |+|||
T Consensus        67 ~vvtdgt~ilGlG~iG~---hS~sPvmh~ka~lf~~~gGid~~yi~ldv~d~de~~~~v~~l~-~~f~GinvED~T~P~k  142 (439)
T 2dvm_A           67 AVVSDGSRILGLGNIGP---LAGLPVMEGKALLFKRFGGVDAFPIMIKEQEPNKFIDIVKAIA-PTFGGINLEDIASPKC  142 (439)
T ss_dssp             EEEECSTTBTTTBCCCH---HHHHHHHHHHHHHHHHHHCCEEEEEECSCCSHHHHHHHHHHTG-GGCSEEEECSCCTTHH
T ss_pred             EEEECCCeEecccceec---cccCHHHHHHHHHHHHhCCCCCeeeeeecCCHHHHHHHHHHhC-ccCcEEEEEeCCCchH
Confidence            34455677777  8998   99999999966  9999 899999999993   5666666666 89999999   99999


Q ss_pred             HHHhhhhhhhcHHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHH
Q 011136          316 EAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKA  395 (493)
Q Consensus       316 ~~v~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara  395 (493)
                      +++++++++         ||||+++++ |+++.| |||+.||+++|+..           +..+++++++|+||||||++
T Consensus       143 ~~il~~l~~---------avNt~vf~d-D~~gtg-ntd~aG~~~AL~~~-----------g~~l~~~rvlvlGAGgAg~a  200 (439)
T 2dvm_A          143 FYILERLRE---------ELDIPVFHD-DQQGTA-AVVLAGLLNALKVV-----------GKKISEITLALFGAGAAGFA  200 (439)
T ss_dssp             HHHHHHHHH---------HCSSCEEEH-HHHHHH-HHHHHHHHHHHHHH-----------TCCTTTCCEEEECCSHHHHH
T ss_pred             HHHHHHHHH---------hcCEEEEeC-CCcEEe-ehHHHHHHHHHHHh-----------CCCccCCEEEEECccHHHHH
Confidence            999999976         999999863 778899 99999999999753           14577899999999999999


Q ss_pred             HHHHHHhCCC---eEEEEe----CC--hHHHHH---HHH---HhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          396 LAYGAKAKGA---RVVIAN----RT--YGESLT---FLR---LMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       396 ~~~~L~~~g~---~i~v~~----R~--~~~a~~---la~---~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      +++.|.+.|+   +|+|+|    |+  ..++++   |.+   .+.... . .   . ....++.+.. .+.+|++|+||.
T Consensus       201 ia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~-~-~---~-~~~~~L~e~l-~~aDVlInaT~~  273 (439)
T 2dvm_A          201 TLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKT-N-G---E-NIEGGPQEAL-KDADVLISFTRP  273 (439)
T ss_dssp             HHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTS-C-T---T-CCCSSHHHHH-TTCSEEEECSCC
T ss_pred             HHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhcc-c-c---c-cccccHHHHh-ccCCEEEEcCCC
Confidence            9999999998   799999    98  444433   321   111100 0 0   0 0012333333 457999999999


Q ss_pred             --CCchhhHhhhhhHHHHhhccceEeeec
Q 011136          461 --GNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       461 --G~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                        ||.++..       ...+.+..+|+|-
T Consensus       274 ~~G~~~~e~-------v~~m~~~~iVfDL  295 (439)
T 2dvm_A          274 GPGVIKPQW-------IEKMNEDAIVFPL  295 (439)
T ss_dssp             CSSSSCHHH-------HTTSCTTCEEEEC
T ss_pred             ccCCCChHH-------HHhcCCCCEEEEC
Confidence              9976421       2233466788873

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.59  E-value=1.2e-16  Score=164.80  Aligned_cols=165  Identities=15%  Similarity=0.130  Sum_probs=126.8

Q ss_pred             CccccccHHHHHHHHHHcCC-CceeeccccccHHHHHHHhcCCCCCeEEE-ccCchHHHhhhhhhhcHHHHHh----cce
Q 011136          262 PVGHSKSPILYNEAFKSVGF-NGVFVHLLVDDIAKFFQTYSSNDFAGFSC-TIPHKEAAVKCCDEVDTVAKSI----GAV  335 (493)
Q Consensus       262 pi~hS~SP~ihn~~f~~~gl-~~~y~~~~~~~l~~~~~~l~~~~~~G~~V-T~P~K~~v~~~~d~~~~~A~~i----gAv  335 (493)
                      .|-+++||.+||.+|.+.|+ .+.|..+.++  .++++.++..++.|+|+ |+|||.+++++++.+++.|..+    ||+
T Consensus        69 ~i~~vksP~~~~~~~~~~g~~~~~y~~~~~~--~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~  146 (361)
T 1pjc_A           69 MVVKVKEPLPAEYDLMQKDQLLFTYLHLAAA--RELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGAR  146 (361)
T ss_dssp             EEECSSCCCGGGGGGCCTTCEEEECCCGGGC--HHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCHHHHHhhcCCCEEEEEeccccC--HHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHH
Confidence            34478899999999999997 8889988875  24566666679999998 9999999999999999999988    999


Q ss_pred             eeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          336 NCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       336 Nti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      ||++..  +|+  |+.         +. .+           ..+++++|+|+|+||+|++++..++..|++|++++|+.+
T Consensus       147 nt~~~~--~g~--G~~---------l~-~l-----------~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~  201 (361)
T 1pjc_A          147 FLERQQ--GGR--GVL---------LG-GV-----------PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE  201 (361)
T ss_dssp             HTSGGG--TSC--CCC---------TT-CB-----------TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             HHhhcc--CCC--cee---------cc-CC-----------CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            999765  554  332         10 01           124568999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhcccccceEEEE----eecccccCCceEEEEeccccCCc
Q 011136          416 ESLTFLRLMSWLLLNTLLFDSVIVI----RILLFTWHLKFFIAANIIHLGNH  463 (493)
Q Consensus       416 ~a~~la~~~~~~~~~~~~~~~~~v~----~~l~~~~~~~~~i~~n~tplG~~  463 (493)
                      +++.+.+.+...         +.++    .++.+.. .+.++++|+|+.+..
T Consensus       202 r~~~~~~~~~~~---------~~~~~~~~~~~~~~~-~~~DvVI~~~~~~~~  243 (361)
T 1pjc_A          202 RLSYLETLFGSR---------VELLYSNSAEIETAV-AEADLLIGAVLVPGR  243 (361)
T ss_dssp             HHHHHHHHHGGG---------SEEEECCHHHHHHHH-HTCSEEEECCCCTTS
T ss_pred             HHHHHHHhhCce---------eEeeeCCHHHHHHHH-cCCCEEEECCCcCCC
Confidence            998887654321         1111    1111222 367999999998763

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.94  E-value=6.2e-10  Score=110.27  Aligned_cols=181  Identities=14%  Similarity=0.131  Sum_probs=127.9

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCch-----HHHhhhhhh
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHK-----EAAVKCCDE  324 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K-----~~v~~~~d~  324 (493)
                      .-++| +|-+++-- .+-...++++|++..+..++-    ++|.+.++.+ .++++.|+.|.+|++     ..++..++.
T Consensus        39 vilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p  117 (285)
T 3l07_A           39 AIIVGNDPASKTYV-ASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKP  117 (285)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCG
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCc
Confidence            44567 45444443 344567899999999888753    4677777777 467999999999997     566666654


Q ss_pred             hcHHHHHhcceeeEEEeccCCe-EEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHh
Q 011136          325 VDTVAKSIGAVNCIIRRQSDGK-LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKA  402 (493)
Q Consensus       325 ~~~~A~~igAvNti~~~~~~g~-l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~  402 (493)
                       +..+.-+..+|+-...  .|. -...+++..|++..|++..           .+++||+++|+|+|+ +|+.++..|..
T Consensus       118 -~KDVDG~~~~N~G~l~--~g~~~~~~PcTp~gv~~lL~~~~-----------i~l~Gk~vvVIG~s~iVG~p~A~lL~~  183 (285)
T 3l07_A          118 -EKDVDGFHPTNVGRLQ--LRDKKCLESCTPKGIMTMLREYG-----------IKTEGAYAVVVGASNVVGKPVSQLLLN  183 (285)
T ss_dssp             -GGBTTCCSHHHHHHHH--HTCTTCCCCHHHHHHHHHHHHTT-----------CCCTTCEEEEECCCTTTHHHHHHHHHH
T ss_pred             -ccccccCChhheeehh--cCCCCCCCCCCHHHHHHHHHHhC-----------CCCCCCEEEEECCCchhHHHHHHHHHH
Confidence             4445556777765322  122 2457889999999988642           578999999999999 79999999999


Q ss_pred             CCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccce
Q 011136          403 KGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSY  482 (493)
Q Consensus       403 ~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~  482 (493)
                      .|+.|++++|+..   .|.+..                        .+.+|+++|||   .|+.+..+|.      -.+.
T Consensus       184 ~gAtVtv~hs~t~---~L~~~~------------------------~~ADIVI~Avg---~p~~I~~~~v------k~Ga  227 (285)
T 3l07_A          184 AKATVTTCHRFTT---DLKSHT------------------------TKADILIVAVG---KPNFITADMV------KEGA  227 (285)
T ss_dssp             TTCEEEEECTTCS---SHHHHH------------------------TTCSEEEECCC---CTTCBCGGGS------CTTC
T ss_pred             CCCeEEEEeCCch---hHHHhc------------------------ccCCEEEECCC---CCCCCCHHHc------CCCc
Confidence            9999999998532   222211                        34578888887   3555665554      3567


Q ss_pred             Eeeec
Q 011136          483 VVMEK  487 (493)
Q Consensus       483 ~~~~~  487 (493)
                      ||+|-
T Consensus       228 vVIDv  232 (285)
T 3l07_A          228 VVIDV  232 (285)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            77774

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.92  E-value=9.8e-10  Score=108.88  Aligned_cols=181  Identities=14%  Similarity=0.187  Sum_probs=125.6

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCch-----HHHhhhhhh
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHK-----EAAVKCCDE  324 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K-----~~v~~~~d~  324 (493)
                      .-++| +|-+++-- ..-...++++|++..+..++.    ++|.+.++.+ .++++.|+.|.+|++     ..++..++-
T Consensus        38 vilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p  116 (285)
T 3p2o_A           38 VILVGDNPASQTYV-KSKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIIS  116 (285)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCG
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCc
Confidence            44667 45444443 334567899999999888773    4677777777 467999999999998     455555443


Q ss_pred             hcHHHHHhcceeeEEEeccCCeEEE-EeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHh
Q 011136          325 VDTVAKSIGAVNCIIRRQSDGKLFG-YNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKA  402 (493)
Q Consensus       325 ~~~~A~~igAvNti~~~~~~g~l~G-~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~  402 (493)
                       +..+.-+..+|+-...  .|...| .+++..|++..|++.           +.+++||+++|+|+|+ +|+.++..|..
T Consensus       117 -~KDVDg~~~~N~g~l~--~g~~~g~~PcTp~gv~~lL~~~-----------~i~l~Gk~vvVvGrs~iVG~p~A~lL~~  182 (285)
T 3p2o_A          117 -SKDVDGFHPINVGYLN--LGLESGFLPCTPLGVMKLLKAY-----------EIDLEGKDAVIIGASNIVGRPMATMLLN  182 (285)
T ss_dssp             -GGCTTCCSHHHHHHHH--TTCCSSCCCHHHHHHHHHHHHT-----------TCCCTTCEEEEECCCTTTHHHHHHHHHH
T ss_pred             -ccccccCCHhhhhhhh--cCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCchHHHHHHHHHHH
Confidence             3334445666654222  232232 788899999998864           2678999999999999 79999999999


Q ss_pred             CCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccce
Q 011136          403 KGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSY  482 (493)
Q Consensus       403 ~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~  482 (493)
                      .|+.|++++|+...   |.+..                        .+.+|+++|||   .|+.+.++|.      -.+.
T Consensus       183 ~gAtVtv~h~~t~~---L~~~~------------------------~~ADIVI~Avg---~p~~I~~~~v------k~Ga  226 (285)
T 3p2o_A          183 AGATVSVCHIKTKD---LSLYT------------------------RQADLIIVAAG---CVNLLRSDMV------KEGV  226 (285)
T ss_dssp             TTCEEEEECTTCSC---HHHHH------------------------TTCSEEEECSS---CTTCBCGGGS------CTTE
T ss_pred             CCCeEEEEeCCchh---HHHHh------------------------hcCCEEEECCC---CCCcCCHHHc------CCCe
Confidence            99999999986422   22211                        34578888887   3555665554      3567


Q ss_pred             Eeeec
Q 011136          483 VVMEK  487 (493)
Q Consensus       483 ~~~~~  487 (493)
                      ||+|-
T Consensus       227 vVIDV  231 (285)
T 3p2o_A          227 IVVDV  231 (285)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            77774

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.87  E-value=1.8e-09  Score=106.98  Aligned_cols=181  Identities=14%  Similarity=0.156  Sum_probs=125.6

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchH-----HHhhhhhh
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKE-----AAVKCCDE  324 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~-----~v~~~~d~  324 (493)
                      .-++| +|-+++.- ..-...++++|++..+..++.    ++|.+.++.+ .++++.|+.|.+|++.     .++..++-
T Consensus        40 vilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p  118 (286)
T 4a5o_A           40 VILVGTDPASQVYV-AHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHP  118 (286)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCG
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCc
Confidence            45667 55555443 334567899999998888753    4677777777 4679999999999987     55555543


Q ss_pred             hcHHHHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhC
Q 011136          325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAK  403 (493)
Q Consensus       325 ~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~  403 (493)
                       +..+.-+..+|+-...  .|.....+++..|++..|++.           +.+++||+++|+|+|+ +|+.++..|...
T Consensus       119 -~KDVDG~~~~N~g~l~--~g~~~~~PcTp~gv~~lL~~~-----------~i~l~Gk~vvVvGrs~iVG~plA~lL~~~  184 (286)
T 4a5o_A          119 -DKDVDGFHPYNIGRLA--QRMPLLRPCTPKGIMTLLAST-----------GADLYGMDAVVVGASNIVGRPMALELLLG  184 (286)
T ss_dssp             -GGCTTCCSHHHHHHHH--TTCCSSCCHHHHHHHHHHHHT-----------TCCCTTCEEEEECTTSTTHHHHHHHHHHT
T ss_pred             -ccccccCChhhhHHHh--cCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCchhHHHHHHHHHHC
Confidence             3444555666764222  233345788899999998864           2678999999999998 899999999999


Q ss_pred             CCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceE
Q 011136          404 GARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYV  483 (493)
Q Consensus       404 g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~  483 (493)
                      |+.|++++|...   .|.+..                        .+.+|+++|||   .|+.+.++|.      -.+.|
T Consensus       185 gAtVtv~hs~T~---~L~~~~------------------------~~ADIVI~Avg---~p~~I~~~~v------k~Gav  228 (286)
T 4a5o_A          185 GCTVTVTHRFTR---DLADHV------------------------SRADLVVVAAG---KPGLVKGEWI------KEGAI  228 (286)
T ss_dssp             TCEEEEECTTCS---CHHHHH------------------------HTCSEEEECCC---CTTCBCGGGS------CTTCE
T ss_pred             CCeEEEEeCCCc---CHHHHh------------------------ccCCEEEECCC---CCCCCCHHHc------CCCeE
Confidence            999999987332   222211                        23468888886   3555665554      35677


Q ss_pred             eeec
Q 011136          484 VMEK  487 (493)
Q Consensus       484 ~~~~  487 (493)
                      |+|-
T Consensus       229 VIDv  232 (286)
T 4a5o_A          229 VIDV  232 (286)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            7774

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.85  E-value=3.4e-09  Score=105.75  Aligned_cols=184  Identities=16%  Similarity=0.119  Sum_probs=126.7

Q ss_pred             EEEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCch-----HHHhhhhh
Q 011136          255 VFGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHK-----EAAVKCCD  323 (493)
Q Consensus       255 ~~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K-----~~v~~~~d  323 (493)
                      ..-++| +|-+++.-- .-..+++++|++..+..++-    ++|.+.++.+ .++++.|+.|.+|++     ..++..++
T Consensus        41 avilvg~dpaS~~Yv~-~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~  119 (300)
T 4a26_A           41 ASIIVGQRMDSKKYVQ-LKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIH  119 (300)
T ss_dssp             EEEEESCCHHHHHHHH-HHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSC
T ss_pred             EEEEeCCCHHHHHHHH-HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCC
Confidence            345667 555555443 34567899999998888743    4677778777 467999999999998     56666655


Q ss_pred             hhcHHHHHhcceeeEEEeccCC--eEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHH
Q 011136          324 EVDTVAKSIGAVNCIIRRQSDG--KLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGA  400 (493)
Q Consensus       324 ~~~~~A~~igAvNti~~~~~~g--~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L  400 (493)
                      - +..+.-+..+|+-...  .|  .-.-.+++..|++..|++..           .+++||+++|||+|+ +|+.++..|
T Consensus       120 p-~KDVDG~~~~N~G~l~--~g~~~~~~~PcTp~gv~~lL~~~~-----------i~l~Gk~vvVIG~s~iVG~p~A~lL  185 (300)
T 4a26_A          120 P-HKDADALLPVNVGLLH--YKGREPPFTPCTAKGVIVLLKRCG-----------IEMAGKRAVVLGRSNIVGAPVAALL  185 (300)
T ss_dssp             G-GGCTTCCSHHHHHHHH--CTTCCCSCCCHHHHHHHHHHHHHT-----------CCCTTCEEEEECCCTTTHHHHHHHH
T ss_pred             c-ccccccCCcceEEEee--cCCCcCCCCCCCHHHHHHHHHHcC-----------CCCCCCEEEEECCCchHHHHHHHHH
Confidence            4 4445556677764322  11  11126788999999998742           678999999999999 799999999


Q ss_pred             HhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhcc
Q 011136          401 KAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCN  480 (493)
Q Consensus       401 ~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~  480 (493)
                      ...|++|++++|.....+ +.+..                        .+.+|+++|||.   |+.+.+.|.      -.
T Consensus       186 ~~~gAtVtv~~~~T~~l~-l~~~~------------------------~~ADIVI~Avg~---p~~I~~~~v------k~  231 (300)
T 4a26_A          186 MKENATVTIVHSGTSTED-MIDYL------------------------RTADIVIAAMGQ---PGYVKGEWI------KE  231 (300)
T ss_dssp             HHTTCEEEEECTTSCHHH-HHHHH------------------------HTCSEEEECSCC---TTCBCGGGS------CT
T ss_pred             HHCCCeEEEEeCCCCCch-hhhhh------------------------ccCCEEEECCCC---CCCCcHHhc------CC
Confidence            999999999998322111 00111                        235788888884   555665553      35


Q ss_pred             ceEeeec
Q 011136          481 SYVVMEK  487 (493)
Q Consensus       481 ~~~~~~~  487 (493)
                      +.||+|-
T Consensus       232 GavVIDv  238 (300)
T 4a26_A          232 GAAVVDV  238 (300)
T ss_dssp             TCEEEEC
T ss_pred             CcEEEEE
Confidence            6777774

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.31  E-value=3.1e-07  Score=94.10  Aligned_cols=100  Identities=10%  Similarity=-0.030  Sum_probs=74.9

Q ss_pred             CCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHh-CCC-eEEEEeCChHHHHHHH
Q 011136          344 DGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYGESLTFL  421 (493)
Q Consensus       344 ~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~-~g~-~i~v~~R~~~~a~~la  421 (493)
                      ++.+.|+|||+.|++.+..  +.           ..+.+++.|||+|++|++.+.+|.. .+. +|+|+||+.+++++++
T Consensus       105 ~~~lT~~RTaa~s~laa~~--la-----------~~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la  171 (350)
T 1x7d_A          105 LTIATALRTAATSLMAAQA--LA-----------RPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLI  171 (350)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--HS-----------CTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHH
T ss_pred             CCEEEeehhhHHHHHHHHH--hc-----------cccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Confidence            4557889999999998863  42           1246899999999999999988754 566 9999999999999999


Q ss_pred             HHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCC
Q 011136          422 RLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGN  462 (493)
Q Consensus       422 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~  462 (493)
                      +.+....     ...+.+..++++.. .+.+|++++||-+.
T Consensus       172 ~~~~~~~-----g~~~~~~~~~~eav-~~aDiVi~aTps~~  206 (350)
T 1x7d_A          172 ANLKEYS-----GLTIRRASSVAEAV-KGVDIITTVTADKA  206 (350)
T ss_dssp             HHHTTCT-----TCEEEECSSHHHHH-TTCSEEEECCCCSS
T ss_pred             HHHHhcc-----CceEEEeCCHHHHH-hcCCEEEEeccCCC
Confidence            9875310     01234444554444 46789999999884

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.25  E-value=9.6e-07  Score=89.31  Aligned_cols=97  Identities=12%  Similarity=-0.017  Sum_probs=73.3

Q ss_pred             CeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHh-CCC-eEEEEeCChHHHHHHHH
Q 011136          345 GKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYGESLTFLR  422 (493)
Q Consensus       345 g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~-~g~-~i~v~~R~~~~a~~la~  422 (493)
                      +.+.++||++.|.+.+..  +.+           .+.++++|||+|++|++.+.+|.. .+. +|+|+||+.++++++++
T Consensus       102 ~~lt~~RTaa~s~laa~~--la~-----------~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~  168 (322)
T 1omo_A          102 TYTTSLRTGAAGGIAAKY--LAR-----------KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVS  168 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HSC-----------TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHh--ccC-----------CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHH
Confidence            346779999999888753  421           246799999999999999999987 456 99999999999999999


Q ss_pred             HhhhhhhcccccceEEEEeecccccCCceEEEEeccccCCc
Q 011136          423 LMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGNH  463 (493)
Q Consensus       423 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~  463 (493)
                      .++....      .+. ..++++..  +.+|++++||-+.+
T Consensus       169 ~~~~~~~------~~~-~~~~~e~v--~aDvVi~aTp~~~p  200 (322)
T 1omo_A          169 YCEDRGI------SAS-VQPAEEAS--RCDVLVTTTPSRKP  200 (322)
T ss_dssp             HHHHTTC------CEE-ECCHHHHT--SSSEEEECCCCSSC
T ss_pred             HHHhcCc------eEE-ECCHHHHh--CCCEEEEeeCCCCc
Confidence            8764211      223 34444444  57899999997653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.11  E-value=2e-06  Score=76.14  Aligned_cols=90  Identities=11%  Similarity=0.068  Sum_probs=64.9

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      +++++|+|+|++|++++..|...|++|++++|+.++++++++.++..         +....++.+.. .+.++++++||-
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~---------~~~~~~~~~~~-~~~Divi~at~~   90 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYE---------YVLINDIDSLI-KNNDVIITATSS   90 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCE---------EEECSCHHHHH-HTCSEEEECSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCc---------eEeecCHHHHh-cCCCEEEEeCCC
Confidence            78999999999999999999999989999999999999999887621         12223333222 467899999998


Q ss_pred             CCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          461 GNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       461 G~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      +-+.  +..      ..+.++.+|+|-.
T Consensus        91 ~~~~--~~~------~~l~~g~~vid~~  110 (144)
T 3oj0_A           91 KTPI--VEE------RSLMPGKLFIDLG  110 (144)
T ss_dssp             SSCS--BCG------GGCCTTCEEEECC
T ss_pred             CCcE--eeH------HHcCCCCEEEEcc
Confidence            7321  111      1123577777753

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=98.08  E-value=2.5e-06  Score=92.41  Aligned_cols=85  Identities=14%  Similarity=0.184  Sum_probs=63.6

Q ss_pred             cCCeEEEEeccHHHHHHHHHh-------hhc--ccCCCCCCcc-cccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEE-
Q 011136          343 SDGKLFGYNTDYVGAISAIED-------GLR--GRLNVSGGVS-SALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIA-  410 (493)
Q Consensus       343 ~~g~l~G~NTD~~G~~~~l~~-------~l~--~~~~~~~~~~-~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~-  410 (493)
                      .+|++.|+|||+.|++..++-       +++  +-. .....+ ..+++++|+|+|+||.|..++.+|+..|+ +|+|+ 
T Consensus       280 ~~Gkl~g~~tD~~g~l~~~~la~~~~~lnL~lmrwr-ll~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD  358 (598)
T 3vh1_A          280 VQGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWR-ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVD  358 (598)
T ss_dssp             TTSSSSCEEEECHHHHCHHHHHHHHHHHHHHHHHHH-HCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             CCCCCcceeecchhccCHHHHHHHHHhhhhhhhhhh-ccchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            379999999999999888761       000  000 000001 34678899999999999999999999999 99999 


Q ss_pred             ---------eCCh---------HHHHHHHHHhhhhh
Q 011136          411 ---------NRTY---------GESLTFLRLMSWLL  428 (493)
Q Consensus       411 ---------~R~~---------~~a~~la~~~~~~~  428 (493)
                               +|..         .||+.+++.+...+
T Consensus       359 ~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iN  394 (598)
T 3vh1_A          359 NGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF  394 (598)
T ss_dssp             CSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHC
T ss_pred             CCcccccccccccccchhhcCcHHHHHHHHHHHhHC
Confidence                     4543         79999999888765

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.04  E-value=2e-06  Score=86.50  Aligned_cols=93  Identities=17%  Similarity=0.064  Sum_probs=68.4

Q ss_pred             CeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhC-CC-eEEEEeCChHHHHHHHH
Q 011136          345 GKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYGESLTFLR  422 (493)
Q Consensus       345 g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~-g~-~i~v~~R~~~~a~~la~  422 (493)
                      +.+.++||+..|++.+.  .+.           ..+.+++.|||+|.+|++++.+|.+. |+ +|+|+||+.++++++++
T Consensus       112 ~~lt~~rT~a~~~la~~--~la-----------~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~  178 (312)
T 2i99_A          112 NVITAKRTAAVSAIATK--FLK-----------PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFAD  178 (312)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHS-----------CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHH--HhC-----------CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence            45778999999998873  242           23467999999999999999999876 87 99999999999999998


Q ss_pred             HhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          423 LMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       423 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      .++.         .+.+..++++.. .+.+|++.+||-
T Consensus       179 ~~~~---------~~~~~~~~~e~v-~~aDiVi~atp~  206 (312)
T 2i99_A          179 TVQG---------EVRVCSSVQEAV-AGADVIITVTLA  206 (312)
T ss_dssp             HSSS---------CCEECSSHHHHH-TTCSEEEECCCC
T ss_pred             HhhC---------CeEEeCCHHHHH-hcCCEEEEEeCC
Confidence            7652         122223333222 345778888874

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.80  E-value=1.8e-05  Score=82.40  Aligned_cols=77  Identities=23%  Similarity=0.311  Sum_probs=59.9

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      .+.|++++|+|+|++|++++..|...|+ +|+++||+.++++++++.++....+         ..++.+.. .+.+++++
T Consensus       164 ~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~---------~~~l~~~l-~~aDvVi~  233 (404)
T 1gpj_A          164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVR---------FDELVDHL-ARSDVVVS  233 (404)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECC---------GGGHHHHH-HTCSEEEE
T ss_pred             cccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceec---------HHhHHHHh-cCCCEEEE
Confidence            3578999999999999999999999999 9999999999999999877632110         01222222 46789999


Q ss_pred             ccccCCch
Q 011136          457 IIHLGNHL  464 (493)
Q Consensus       457 ~tplG~~~  464 (493)
                      +||-+.+.
T Consensus       234 at~~~~~~  241 (404)
T 1gpj_A          234 ATAAPHPV  241 (404)
T ss_dssp             CCSSSSCC
T ss_pred             ccCCCCce
Confidence            99887764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.79  E-value=4.7e-05  Score=75.82  Aligned_cols=93  Identities=17%  Similarity=0.118  Sum_probs=66.0

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.+++++|||+|++|++++..|...|++|++++|+.++.+.+.+ ++..         +.-..++++.. .+.+++++
T Consensus       153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~---------~~~~~~l~~~l-~~aDvVi~  221 (300)
T 2rir_A          153 YTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITE-MGLV---------PFHTDELKEHV-KDIDICIN  221 (300)
T ss_dssp             SCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCE---------EEEGGGHHHHS-TTCSEEEE
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-CCCe---------EEchhhHHHHh-hCCCEEEE
Confidence            4678999999999999999999999999999999999988766543 2211         00012333333 56899999


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|.++-.+.       .+..+-++.+++|-
T Consensus       222 ~~p~~~i~~~-------~~~~mk~g~~lin~  245 (300)
T 2rir_A          222 TIPSMILNQT-------VLSSMTPKTLILDL  245 (300)
T ss_dssp             CCSSCCBCHH-------HHTTSCTTCEEEEC
T ss_pred             CCChhhhCHH-------HHHhCCCCCEEEEE
Confidence            9999765432       23444456777764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.77  E-value=6e-05  Score=74.80  Aligned_cols=93  Identities=17%  Similarity=0.064  Sum_probs=65.4

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|++++|+|+|++|++++..|...|++|++++|+.++.+.+. .++....         -..++++.. .+.+++++
T Consensus       151 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~---------~~~~l~~~l-~~aDvVi~  219 (293)
T 3d4o_A          151 FTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA-EMGMEPF---------HISKAAQEL-RDVDVCIN  219 (293)
T ss_dssp             SCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTSEEE---------EGGGHHHHT-TTCSEEEE
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HCCCeec---------ChhhHHHHh-cCCCEEEE
Confidence            457899999999999999999999999999999999998766553 2321110         012333333 56889999


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|+++-.+.       .+..+-++.+++|-
T Consensus       220 ~~p~~~i~~~-------~l~~mk~~~~lin~  243 (293)
T 3d4o_A          220 TIPALVVTAN-------VLAEMPSHTFVIDL  243 (293)
T ss_dssp             CCSSCCBCHH-------HHHHSCTTCEEEEC
T ss_pred             CCChHHhCHH-------HHHhcCCCCEEEEe
Confidence            9999775432       23444456777764

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.76  E-value=7.9e-06  Score=86.73  Aligned_cols=84  Identities=17%  Similarity=0.118  Sum_probs=56.2

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g-~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      ..+++++|+|+|+||+|++++.+|.+.| ++|+|++|+.++++++++..+...   ...| +.-..++.+.. .+.++++
T Consensus        19 ~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~---~~~D-~~d~~~l~~~l-~~~DvVI   93 (467)
T 2axq_A           19 GRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKA---ISLD-VTDDSALDKVL-ADNDVVI   93 (467)
T ss_dssp             ----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEE---EECC-TTCHHHHHHHH-HTSSEEE
T ss_pred             cCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcE---EEEe-cCCHHHHHHHH-cCCCEEE
Confidence            4567889999999999999999999984 599999999999999886411000   0000 00001121112 3578999


Q ss_pred             eccccCCchh
Q 011136          456 NIIHLGNHLE  465 (493)
Q Consensus       456 n~tplG~~~~  465 (493)
                      |+||.+++++
T Consensus        94 n~tp~~~~~~  103 (467)
T 2axq_A           94 SLIPYTFHPN  103 (467)
T ss_dssp             ECSCGGGHHH
T ss_pred             ECCchhhhHH
Confidence            9999998765

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.74  E-value=0.00014  Score=71.68  Aligned_cols=133  Identities=14%  Similarity=0.126  Sum_probs=85.2

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  329 (493)
                      .-++| +|-+++.-- .-....++.|+ .....++-    +++.+.++.+ .+++..|.-|-.|.-..    +|+    -
T Consensus        32 vilvg~dpaS~~Yv~-~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~----id~----~  101 (276)
T 3ngx_A           32 LIQIGDNEAASIYAR-AKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKG----FDY----Y  101 (276)
T ss_dssp             EEEESCCHHHHHHHH-HHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHHHCTTCCEEEECSCCCTT----CCH----H
T ss_pred             EEEeCCCHHHHHHHH-HHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCH----H
Confidence            34566 555555443 33456788999 66554442    3676667666 57899999999996432    221    1


Q ss_pred             HHhcceeeEEEeccCCeEEEEe-------------ccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHH
Q 011136          330 KSIGAVNCIIRRQSDGKLFGYN-------------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKA  395 (493)
Q Consensus       330 ~~igAvNti~~~~~~g~l~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara  395 (493)
                      +.+.+++.-.--  || ++-+|             .--.|++..|++.            . ++||+++|+|+|+ +|+.
T Consensus       102 ~v~~~I~p~KDV--DG-~~p~n~G~l~~g~~~~~PcTp~gv~~lL~~~------------~-l~Gk~vvVvG~s~iVG~p  165 (276)
T 3ngx_A          102 EIVRNIPYYKDV--DA-LSPYNQGLIALNREFLVPATPRAVIDIMDYY------------G-YHENTVTIVNRSPVVGRP  165 (276)
T ss_dssp             HHHTTSCGGGBT--TC-CSHHHHHHHHTTCCSSCCHHHHHHHHHHHHH------------T-CCSCEEEEECCCTTTHHH
T ss_pred             HHHhhCCCCCcc--cC-CCccchhhhhcCCCCCCCCcHHHHHHHHHHh------------C-cCCCEEEEEcCChHHHHH
Confidence            223333322111  21 11111             1136888887753            2 7899999999998 8999


Q ss_pred             HHHHHHhCCCeEEEEeCCh
Q 011136          396 LAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       396 ~~~~L~~~g~~i~v~~R~~  414 (493)
                      ++..|...|++|++++|+.
T Consensus       166 lA~lL~~~gAtVtv~~~~t  184 (276)
T 3ngx_A          166 LSMMLLNRNYTVSVCHSKT  184 (276)
T ss_dssp             HHHHHHHTTCEEEEECTTC
T ss_pred             HHHHHHHCCCeEEEEeCCc
Confidence            9999999999999998853

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=97.72  E-value=1.3e-06  Score=91.88  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=73.9

Q ss_pred             HHHhcceeeEEEeccCCeEEEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eE
Q 011136          329 AKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RV  407 (493)
Q Consensus       329 A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i  407 (493)
                      .+.+|++|||+.+  +|++.|     .||...++.. .          ..+++++|+|+|+||.|..++..|+..|+ +|
T Consensus         6 ~~r~~~vntl~~~--~g~~~g-----~gf~~g~e~~-~----------~~L~~~~VlvvG~GGlGs~va~~La~aGvg~i   67 (434)
T 1tt5_B            6 EGRWNHVKKFLER--SGPFTH-----PDFEPSTESL-Q----------FLLDTCKVLVIGAGGLGCELLKNLALSGFRQI   67 (434)
T ss_dssp             TTTTHHHHHHHHS--CCSSCC-----TTCCCCSSHH-H----------HHHHTCCEEEECSSTHHHHHHHHHHHTTCCCE
T ss_pred             hhhhccceEEEcC--CCcccc-----cccccCHHHH-H----------HHhcCCEEEEECcCHHHHHHHHHHHHcCCCEE
Confidence            3568999999987  888766     5554433221 0          12356799999999999999999999999 99


Q ss_pred             EEE----------eCCh---------HHHHHHHHHhhhhhhcccccceEEEEee-cc---cccCCceEEEEecc
Q 011136          408 VIA----------NRTY---------GESLTFLRLMSWLLLNTLLFDSVIVIRI-LL---FTWHLKFFIAANII  458 (493)
Q Consensus       408 ~v~----------~R~~---------~~a~~la~~~~~~~~~~~~~~~~~v~~~-l~---~~~~~~~~i~~n~t  458 (493)
                      +|+          +|..         .||+.+++.+...+..    -++..... +.   ..+-.+++++++++
T Consensus        68 ~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~----v~v~~~~~~i~~~~~~~~~~~DlVi~~~  137 (434)
T 1tt5_B           68 HVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN----CNVVPHFNKIQDFNDTFYRQFHIIVCGL  137 (434)
T ss_dssp             EEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTT----CCCEEEESCGGGBCHHHHTTCSEEEECC
T ss_pred             EEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCC----CEEEEEecccchhhHHHhcCCCEEEECC
Confidence            999          5553         6888888887765521    12222211 11   12226688999875

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.63  E-value=3.7e-05  Score=74.76  Aligned_cols=76  Identities=11%  Similarity=0.094  Sum_probs=57.2

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh-------------------HHHHHHHHHhhhhhhcccccceEE
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY-------------------GESLTFLRLMSWLLLNTLLFDSVI  438 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~-------------------~~a~~la~~~~~~~~~~~~~~~~~  438 (493)
                      +++++|+|+|+||.|..++.+|+..|+ +|+|++++.                   .|++.+++.+...+..    -.+.
T Consensus        29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~----~~v~  104 (249)
T 1jw9_B           29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH----IAIT  104 (249)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT----SEEE
T ss_pred             HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCC----cEEE
Confidence            456899999999999999999999998 999999998                   8999999888765421    1222


Q ss_pred             EEe------ecccccCCceEEEEeccc
Q 011136          439 VIR------ILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       439 v~~------~l~~~~~~~~~i~~n~tp  459 (493)
                      .+.      ++.+.+ .++++++++|+
T Consensus       105 ~~~~~~~~~~~~~~~-~~~DvVi~~~d  130 (249)
T 1jw9_B          105 PVNALLDDAELAALI-AEHDLVLDCTD  130 (249)
T ss_dssp             EECSCCCHHHHHHHH-HTSSEEEECCS
T ss_pred             EEeccCCHhHHHHHH-hCCCEEEEeCC
Confidence            221      111222 46899999985

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.39  E-value=0.00046  Score=70.80  Aligned_cols=68  Identities=19%  Similarity=0.118  Sum_probs=54.6

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                      +++||+|+|+|+|.+|+.++..|.+.|++|+++||+.++++++++.++...            .+.++.|..+.+|++++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~------------v~~~~ll~~~~DIvip~  237 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADA------------VAPNAIYGVTCDIFAPC  237 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEE------------CCGGGTTTCCCSEEEEC
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEE------------EChHHHhccCCcEeecc
Confidence            688999999999999999999999999999999999999999988764221            12234454466777765

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.34  E-value=6.7e-05  Score=79.19  Aligned_cols=81  Identities=17%  Similarity=0.087  Sum_probs=55.1

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      +++++|+|+|++|++++.+|.+.|++|++++|+.++++++++.++....  ...| +.-..++.+.. .+.++++|++|.
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~--~~~D-v~d~~~l~~~l-~~~DvVIn~a~~   78 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTP--ISLD-VNDDAALDAEV-AKHDLVISLIPY   78 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEE--EECC-TTCHHHHHHHH-TTSSEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceE--EEee-cCCHHHHHHHH-cCCcEEEECCcc
Confidence            5789999999999999999999999999999999999888765431100  0000 00001111112 357899999999


Q ss_pred             CCchh
Q 011136          461 GNHLE  465 (493)
Q Consensus       461 G~~~~  465 (493)
                      +++++
T Consensus        79 ~~~~~   83 (450)
T 1ff9_A           79 TFHAT   83 (450)
T ss_dssp             -CHHH
T ss_pred             ccchH
Confidence            98865

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.32  E-value=0.00019  Score=69.74  Aligned_cols=76  Identities=18%  Similarity=0.196  Sum_probs=55.6

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEe----------CCh---------HHHHHHHHHhhhhhhcccccceEE
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIAN----------RTY---------GESLTFLRLMSWLLLNTLLFDSVI  438 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~----------R~~---------~~a~~la~~~~~~~~~~~~~~~~~  438 (493)
                      +++++|+|+|+||+|..++.+|+..|+ +|+|++          |..         .|++.+++.+...+..    -++.
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~----~~v~  101 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPD----IQLT  101 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTT----SEEE
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCC----CEEE
Confidence            457899999999999999999999999 999994          443         8999999988765421    1233


Q ss_pred             EEee------cccccCCceEEEEeccc
Q 011136          439 VIRI------LLFTWHLKFFIAANIIH  459 (493)
Q Consensus       439 v~~~------l~~~~~~~~~i~~n~tp  459 (493)
                      ....      +.+.+ .++++++++|.
T Consensus       102 ~~~~~~~~~~~~~~~-~~~DvVi~~~d  127 (251)
T 1zud_1          102 ALQQRLTGEALKDAV-ARADVVLDCTD  127 (251)
T ss_dssp             EECSCCCHHHHHHHH-HHCSEEEECCS
T ss_pred             EEeccCCHHHHHHHH-hcCCEEEECCC
Confidence            3221      11122 45789999986

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.28  E-value=0.00088  Score=65.29  Aligned_cols=52  Identities=21%  Similarity=0.230  Sum_probs=46.7

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      .+|+||.++|-|+ +|.|++++..|++.|++|++++|+.++++++++++....
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g   55 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG   55 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            3688999999987 789999999999999999999999999999999886543

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.21  E-value=0.00061  Score=68.59  Aligned_cols=144  Identities=16%  Similarity=0.102  Sum_probs=86.3

Q ss_pred             Eeec-CCccccccHHHHHHHHHHcCCCceeeccccc-cHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHHHHhc
Q 011136          257 GIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLVD-DIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIG  333 (493)
Q Consensus       257 ~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~-~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~ig  333 (493)
                      -++| +|-+++-- .+-....++.|+......++-+ ++.+.++.+ .++++.|.-|-.|.-..+    |   +. +.+.
T Consensus        42 ilvg~dpas~~Yv-~~k~k~~~~~Gi~~~~~~l~~~~~l~~~i~~lN~d~~v~GIlvqlPlp~~~----~---~~-~i~~  112 (320)
T 1edz_A           42 FLANNDPAAKMYA-TWTQKTSESMGFRYDLRVIEDKDFLEEAIIQANGDDSVNGIMVYFPVFGNA----Q---DQ-YLQQ  112 (320)
T ss_dssp             EECCCCHHHHHHH-HHHHHHHHHHTCEEEEEECSSGGGHHHHHHHHHHCTTCCEEEECSCSSSSH----H---HH-HHTT
T ss_pred             EEECCchhHHHHH-HHHHHHHHHcCCEEEEEECCChHHHHHHHHHHcCCCCCCEEEEeCCCCCCC----C---HH-HHHh
Confidence            3556 34333332 2335568899998776666543 488888877 678999999999974321    1   11 2222


Q ss_pred             ceeeEEEeccCC-------eEE-------------EE-eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchH
Q 011136          334 AVNCIIRRQSDG-------KLF-------------GY-NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGA  392 (493)
Q Consensus       334 AvNti~~~~~~g-------~l~-------------G~-NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGa  392 (493)
                      +++--.--  ||       +++             ++ -.-..|.+..+++. . ..+.-.+.+.+++|++++|||+|.+
T Consensus       113 ~I~p~KDV--DG~~~~n~g~l~~~~~~l~~~~~~~~~~PcTp~a~v~ll~~~-~-~~~~~~~~g~~l~gk~vvVIG~G~i  188 (320)
T 1edz_A          113 VVCKEKDV--EGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFL-K-IYNNLLPEGNRLYGKKCIVINRSEI  188 (320)
T ss_dssp             TSCTTTBT--TCCSHHHHHHHHTTCCBSSSSSCSBCCCCHHHHHHHHHHHHT-T-CSCTTSCTTCTTTTCEEEEECCCTT
T ss_pred             ccCccccc--CcCChhhhHHHhcCCccccccccCCCcCCCcHHHHHHHHHhh-c-ccccccccCCCCCCCEEEEECCCcc
Confidence            22211000  11       110             00 01146667777652 0 0000000125788999999999985


Q ss_pred             -HHHHHHHHHhCCCeEEEEeCC
Q 011136          393 -GKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       393 -ara~~~~L~~~g~~i~v~~R~  413 (493)
                       |+.++..|...|++|+|+||+
T Consensus       189 VG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          189 VGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             THHHHHHHHHTTSCEEEEECSS
T ss_pred             hHHHHHHHHHHCCCEEEEEeCc
Confidence             999999999999999999998

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=97.20  E-value=0.00029  Score=70.13  Aligned_cols=139  Identities=18%  Similarity=0.262  Sum_probs=86.4

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  329 (493)
                      .-++| +|-+++.-- +-....++.|+......++-    ++|.+.++.+ .++++.|.-|-.|.-..- + +|   + -
T Consensus        40 vilvG~dpaS~~Yv~-~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~-~-id---~-~  112 (301)
T 1a4i_A           40 ILQVGNRDDSNLYIN-VKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSEN-S-IN---T-E  112 (301)
T ss_dssp             EEEESCCHHHHHHHH-HHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSS-C-CC---H-H
T ss_pred             EEEeCCChhHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCC-c-cC---H-H
Confidence            34667 454444432 33456788999877655543    3677777777 678999999999863210 0 11   1 1


Q ss_pred             HHhcceeeEEEeccC-------CeEE-EE------eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHH
Q 011136          330 KSIGAVNCIIRRQSD-------GKLF-GY------NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGK  394 (493)
Q Consensus       330 ~~igAvNti~~~~~~-------g~l~-G~------NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aar  394 (493)
                      +.+.+++--.--  |       |+++ |.      -.-..|++..|++.           +.+++|++|+|||+|. +|+
T Consensus       113 ~i~~~I~p~KDV--DG~hp~N~G~l~~g~~~~~~~PcTp~gi~~ll~~~-----------~i~l~gk~vvVIG~s~iVG~  179 (301)
T 1a4i_A          113 EVINAIAPEKDV--DGLTSINAGRLARGDLNDCFIPCTPKGCLELIKET-----------GVPIAGRHAVVVGRSKIVGA  179 (301)
T ss_dssp             HHHHTSCGGGBT--TCCSHHHHHHHHTTCCSSCCCCHHHHHHHHHHHTT-----------TCCCTTCEEEEECCCTTTHH
T ss_pred             HHHhccCCCCCc--cCCChhhHHHHhcCCCCCCccCchHHHHHHHHHHc-----------CCCCCCCEEEEECCCchHHH
Confidence            112222111000  1       1111 11      11367777777653           2578999999999997 799


Q ss_pred             HHHHHHHhCCCeEEEEeCCh
Q 011136          395 ALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       395 a~~~~L~~~g~~i~v~~R~~  414 (493)
                      .++..|...|++|++++++.
T Consensus       180 p~A~lL~~~gAtVtv~hs~t  199 (301)
T 1a4i_A          180 PMHDLLLWNNATVTTCHSKT  199 (301)
T ss_dssp             HHHHHHHHTTCEEEEECTTC
T ss_pred             HHHHHHHhCCCeEEEEECCc
Confidence            99999999999999998653

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.20  E-value=0.00059  Score=67.91  Aligned_cols=51  Identities=12%  Similarity=0.154  Sum_probs=45.4

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh------------------HHHHHHHHHhhhhh
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY------------------GESLTFLRLMSWLL  428 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~------------------~~a~~la~~~~~~~  428 (493)
                      .+++++|+|+|+||.|..++.+|+..|+ +|+|++++.                  .|++.+++.+...+
T Consensus        33 kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iN  102 (292)
T 3h8v_A           33 KIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNIN  102 (292)
T ss_dssp             GGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHC
T ss_pred             HHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhC
Confidence            3567899999999999999999999999 999999887                  78888888877665

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=97.18  E-value=0.00038  Score=70.71  Aligned_cols=50  Identities=12%  Similarity=0.195  Sum_probs=44.2

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh-------------------HHHHHHHHHhhhhh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY-------------------GESLTFLRLMSWLL  428 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~-------------------~~a~~la~~~~~~~  428 (493)
                      +++++|+|+|+||.|..++.+|+..|+ +|+|++++.                   .|++.+++.+...+
T Consensus        32 L~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~in  101 (340)
T 3rui_A           32 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF  101 (340)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred             HhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhC
Confidence            568899999999999999999999999 999998764                   78888888777665

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.15  E-value=0.00047  Score=70.98  Aligned_cols=79  Identities=18%  Similarity=0.050  Sum_probs=55.1

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                      .+.+++|+|+|+|++|++++..++..|++|++++|+.++.+.+.+.++....... .+    ..++.+.. .+.++++++
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~-~~----~~~l~~~l-~~aDvVi~~  238 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRY-SS----AYELEGAV-KRADLVIGA  238 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEE-CC----HHHHHHHH-HHCSEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEecc-CC----HHHHHHHH-cCCCEEEEC
Confidence            4668999999999999999999999999999999999988777665542210000 00    01122222 457889998


Q ss_pred             cccCC
Q 011136          458 IHLGN  462 (493)
Q Consensus       458 tplG~  462 (493)
                      ++...
T Consensus       239 ~~~p~  243 (377)
T 2vhw_A          239 VLVPG  243 (377)
T ss_dssp             CCCTT
T ss_pred             CCcCC
Confidence            86554

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.14  E-value=0.00089  Score=64.42  Aligned_cols=40  Identities=25%  Similarity=0.363  Sum_probs=34.8

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      ..+.++++.|||+|.+|.+++..|++.|++|++++|+.++
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~   54 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKA   54 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            4567889999999999999999999999999999999987

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.14  E-value=0.00095  Score=62.18  Aligned_cols=96  Identities=15%  Similarity=0.033  Sum_probs=62.7

Q ss_pred             EEEEEe-cchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccC
Q 011136          383 LFVVIG-AGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLG  461 (493)
Q Consensus       383 ~vlvlG-aGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG  461 (493)
                      +++|+| +|.+|++++..|.+.|++|++++|+.++++++.+.++. ...   ...+. ..++.+.. .+.++++.++|-.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~---~~~~~-~~~~~~~~-~~~D~Vi~~~~~~   75 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR-IAG---DASIT-GMKNEDAA-EACDIAVLTIPWE   75 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH-HHS---SCCEE-EEEHHHHH-HHCSEEEECSCHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-ccc---cCCCC-hhhHHHHH-hcCCEEEEeCChh
Confidence            689999 99999999999999999999999999999888765442 111   01122 13333333 4567888888744


Q ss_pred             CchhhHhhhhhHHHHhhccceEeeeccc
Q 011136          462 NHLEWVTAAFNLFFYLTCNSYVVMEKTE  489 (493)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (493)
                      ...+.+    . .+...+++.+|+|-+.
T Consensus        76 ~~~~~~----~-~l~~~~~~~~vi~~~~   98 (212)
T 1jay_A           76 HAIDTA----R-DLKNILREKIVVSPLV   98 (212)
T ss_dssp             HHHHHH----H-HTHHHHTTSEEEECCC
T ss_pred             hHHHHH----H-HHHHHcCCCEEEEcCC
Confidence            333222    2 2222236778887653

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=97.14  E-value=0.00072  Score=66.91  Aligned_cols=137  Identities=20%  Similarity=0.272  Sum_probs=86.4

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  329 (493)
                      .-++| +|-+++.-- .-....++.|+......++-    +++.+.++.+ .++++.|.-|-.|.-..    +|+    -
T Consensus        38 vilvG~dpaS~~Yv~-~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~----id~----~  108 (288)
T 1b0a_A           38 VVLVGSNPASQIYVA-SKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAG----IDN----V  108 (288)
T ss_dssp             EEEESCCHHHHHHHH-HHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTT----SCH----H
T ss_pred             EEEeCCChhHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCC----CCH----H
Confidence            44566 454444433 33456788999876555532    4677777777 57899999999996322    211    1


Q ss_pred             HHhcceeeEEEeccCC-------eEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHH
Q 011136          330 KSIGAVNCIIRRQSDG-------KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKAL  396 (493)
Q Consensus       330 ~~igAvNti~~~~~~g-------~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~  396 (493)
                      +.+.+++--.--  ||       +++ |.    -.-..|++..|++.           +.+++|++++|||+|+ .|+.+
T Consensus       109 ~i~~~I~p~KDV--DG~~p~n~g~l~~g~~~~~PcTp~gi~~ll~~~-----------~i~l~gk~vvVIG~s~iVG~p~  175 (288)
T 1b0a_A          109 KVLERIHPDKDV--DGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERY-----------NIDTFGLNAVVIGASNIVGRPM  175 (288)
T ss_dssp             HHHTTSCTTTCT--TCCSHHHHHHHHTTCCSSCCHHHHHHHHHHHHT-----------TCCCTTCEEEEECCCTTTHHHH
T ss_pred             HHHhccCCccCc--ccCCccchhHHhCCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCChHHHHHH
Confidence            122222211000  11       111 10    01246777777653           2578999999999998 69999


Q ss_pred             HHHHHhCCCeEEEEeCCh
Q 011136          397 AYGAKAKGARVVIANRTY  414 (493)
Q Consensus       397 ~~~L~~~g~~i~v~~R~~  414 (493)
                      +..|...|++|++++++.
T Consensus       176 A~lL~~~gAtVtv~hs~t  193 (288)
T 1b0a_A          176 SMELLLAGCTTTVTHRFT  193 (288)
T ss_dssp             HHHHHTTTCEEEEECSSC
T ss_pred             HHHHHHCCCeEEEEeCCc
Confidence            999999999999998765

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.10  E-value=0.0017  Score=63.73  Aligned_cols=43  Identities=16%  Similarity=0.171  Sum_probs=39.7

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      ++|.|||+|.+|++++..|+..|++|++++|+.++++++.+.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i   47 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRF   47 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Confidence            6899999999999999999999999999999999998887654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.04  E-value=0.00091  Score=55.64  Aligned_cols=41  Identities=22%  Similarity=0.232  Sum_probs=37.7

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCC-CeEEEEeCChHHHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYGESLTFL  421 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g-~~i~v~~R~~~~a~~la  421 (493)
                      +++++|+|+|++|++++..|...| ++|++++|+.++.+.+.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~   46 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLN   46 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence            578999999999999999999999 59999999999988776

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.04  E-value=0.00066  Score=68.19  Aligned_cols=73  Identities=12%  Similarity=-0.008  Sum_probs=54.3

Q ss_pred             CCCEEEEEecchHHHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~-~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                      ..++++|||+|++|++.+.+|.. .+. +|+|+||+  +++++++.+....-     -.+.+. ++++.. .+.+|++.+
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g-----~~~~~~-~~~eav-~~aDIVi~a  190 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCG-----VPARMA-APADIA-AQADIVVTA  190 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHT-----SCEEEC-CHHHHH-HHCSEEEEC
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcC-----CeEEEe-CHHHHH-hhCCEEEEc
Confidence            36899999999999999999987 456 99999999  99999987764320     123333 444333 457888888


Q ss_pred             cccC
Q 011136          458 IHLG  461 (493)
Q Consensus       458 tplG  461 (493)
                      ||-+
T Consensus       191 T~s~  194 (313)
T 3hdj_A          191 TRST  194 (313)
T ss_dssp             CCCS
T ss_pred             cCCC
Confidence            8876

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.03  E-value=0.002  Score=65.80  Aligned_cols=64  Identities=25%  Similarity=0.362  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhhhcccCCCCCCccc-ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSS-ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~-~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +.|.+.+++..+...       +. +++||++.|+|.|.+|+.++..|...|++|++++++.++ ++.++.++
T Consensus       154 g~Gv~~~~~~~~~~~-------G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~-~~~a~~~g  218 (355)
T 1c1d_A          154 AVGVFEAMKATVAHR-------GLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER-VAHAVALG  218 (355)
T ss_dssp             HHHHHHHHHHHHHHT-------TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHHHTT
T ss_pred             HHHHHHHHHHHHHhc-------CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHhcC
Confidence            677777777655431       24 688999999999999999999999999999999999876 55665553

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=97.02  E-value=0.0012  Score=67.30  Aligned_cols=74  Identities=18%  Similarity=0.132  Sum_probs=55.7

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh-------------------HHHHHHHHHhhhhhhcccccceEE
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY-------------------GESLTFLRLMSWLLLNTLLFDSVI  438 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~-------------------~~a~~la~~~~~~~~~~~~~~~~~  438 (493)
                      +++++|+|+|+||.|..++.+|+..|+ +|+|++++.                   .|++.+++.+...+..    -++.
T Consensus       116 L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~----v~v~  191 (353)
T 3h5n_A          116 LKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSE----ISVS  191 (353)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT----SEEE
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCC----CeEE
Confidence            457899999999999999999999999 999999863                   5888888877765521    1233


Q ss_pred             EEee-------cccccCCceEEEEecc
Q 011136          439 VIRI-------LLFTWHLKFFIAANII  458 (493)
Q Consensus       439 v~~~-------l~~~~~~~~~i~~n~t  458 (493)
                      .+..       +.+ + .++++++++|
T Consensus       192 ~~~~~i~~~~~~~~-~-~~~DlVvd~~  216 (353)
T 3h5n_A          192 EIALNINDYTDLHK-V-PEADIWVVSA  216 (353)
T ss_dssp             EEECCCCSGGGGGG-S-CCCSEEEECC
T ss_pred             EeecccCchhhhhH-h-ccCCEEEEec
Confidence            3221       223 4 6788999887

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.00  E-value=0.00087  Score=63.44  Aligned_cols=45  Identities=24%  Similarity=0.271  Sum_probs=40.9

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEE-EeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVI-ANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v-~~R~~~~a~~la~~~~  425 (493)
                      -.++.|||+|.+|.+++..|.+.|++|++ ++|+.++++++++.++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g   68 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFG   68 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhC
Confidence            35799999999999999999999998888 9999999999988765

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=96.96  E-value=0.0095  Score=55.71  Aligned_cols=122  Identities=17%  Similarity=0.155  Sum_probs=77.0

Q ss_pred             CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 011136           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVD  102 (493)
Q Consensus        23 ~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (493)
                      ...|+.+|...+.+++...++.+.+.|+|++|+|.-.   .+..+.++.+.+..+.|+++-.     |+.  .+. +   
T Consensus         6 ~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~---~~~~~~i~~i~~~~~~~l~vg~-----g~~--~~~-~---   71 (212)
T 2v82_A            6 KLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNS---PQWEQSIPAIVDAYGDKALIGA-----GTV--LKP-E---   71 (212)
T ss_dssp             SSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTS---TTHHHHHHHHHHHHTTTSEEEE-----ECC--CSH-H---
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCC---hhHHHHHHHHHHhCCCCeEEEe-----ccc--cCH-H---
Confidence            4556678999999999999999888999999998542   1223455566555567777621     111  122 2   


Q ss_pred             HHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          103 VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       103 ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      .++.+++.|+|+|-+.- .+.+..+...   .-+.+++.+.|    +  .+++    .++.+.|+|++++
T Consensus        72 ~i~~a~~~Gad~V~~~~-~~~~~~~~~~---~~g~~~~~g~~----t--~~e~----~~a~~~G~d~v~v  127 (212)
T 2v82_A           72 QVDALARMGCQLIVTPN-IHSEVIRRAV---GYGMTVCPGCA----T--ATEA----FTALEAGAQALKI  127 (212)
T ss_dssp             HHHHHHHTTCCEEECSS-CCHHHHHHHH---HTTCEEECEEC----S--HHHH----HHHHHTTCSEEEE
T ss_pred             HHHHHHHcCCCEEEeCC-CCHHHHHHHH---HcCCCEEeecC----C--HHHH----HHHHHCCCCEEEE
Confidence            35677888999995332 1223333222   23567776655    2  2333    4556789999996

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.92  E-value=0.0013  Score=64.66  Aligned_cols=41  Identities=29%  Similarity=0.321  Sum_probs=38.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      +++.|||+|.+|++++..|.+.|++|++++|+.++++.+.+
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~   42 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAA   42 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH
Confidence            57999999999999999999999999999999999988876

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.84  E-value=0.0015  Score=61.64  Aligned_cols=89  Identities=10%  Similarity=0.065  Sum_probs=59.6

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      ..++.|||+|.+|++++..|.+.|++|++++|+.++++++.+.    .        +.+. ++.+.. .+.++++.++|-
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~----g--------~~~~-~~~~~~-~~~DvVi~av~~   93 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPS----A--------AQVT-FQEEAV-SSPEVIFVAVFR   93 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBT----T--------SEEE-EHHHHT-TSCSEEEECSCG
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C--------Ccee-cHHHHH-hCCCEEEECCCh
Confidence            4689999999999999999999999999999999888766432    1        1111 333333 456788888885


Q ss_pred             CCchhhHhhhhhHHHHhhccceEeeeccc
Q 011136          461 GNHLEWVTAAFNLFFYLTCNSYVVMEKTE  489 (493)
Q Consensus       461 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (493)
                      ....+.+ .     +....++.+|.|-+.
T Consensus        94 ~~~~~v~-~-----l~~~~~~~~vv~~s~  116 (215)
T 2vns_A           94 EHYSSLC-S-----LSDQLAGKILVDVSN  116 (215)
T ss_dssp             GGSGGGG-G-----GHHHHTTCEEEECCC
T ss_pred             HHHHHHH-H-----HHHhcCCCEEEEeCC
Confidence            4322222 1     222347788887653

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.82  E-value=0.002  Score=62.31  Aligned_cols=50  Identities=22%  Similarity=0.306  Sum_probs=44.4

Q ss_pred             ccCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          378 ALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       378 ~l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      +++||.+||-|++   |.|++++..|++.|++|++.+|+.+..+++++.+...
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~   55 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQL   55 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc
Confidence            4789999999974   8999999999999999999999998888888776643

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.82  E-value=0.0014  Score=65.64  Aligned_cols=94  Identities=13%  Similarity=0.088  Sum_probs=61.0

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      ..+++.|||+|.+|++++..|++.|++|++++|++++++++++. +           +++..++++-. .+.++++-++|
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~-g-----------~~~~~~~~e~~-~~aDvVi~~vp   96 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAAL-G-----------ATIHEQARAAA-RDADIVVSMLE   96 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT-T-----------CEEESSHHHHH-TTCSEEEECCS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHC-C-----------CEeeCCHHHHH-hcCCEEEEECC
Confidence            35689999999999999999999999999999999999888653 1           11223332222 23445554554


Q ss_pred             cCCchhhHhhhhh--HHHHhhccceEeeeccc
Q 011136          460 LGNHLEWVTAAFN--LFFYLTCNSYVVMEKTE  489 (493)
Q Consensus       460 lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  489 (493)
                      -.   ..+...+.  .....+.++.+|+|.+-
T Consensus        97 ~~---~~~~~v~~~~~~~~~l~~~~~vi~~st  125 (320)
T 4dll_A           97 NG---AVVQDVLFAQGVAAAMKPGSLFLDMAS  125 (320)
T ss_dssp             SH---HHHHHHHTTTCHHHHCCTTCEEEECSC
T ss_pred             CH---HHHHHHHcchhHHhhCCCCCEEEecCC
Confidence            32   22322222  22334467788887654

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.76  E-value=0.005  Score=63.32  Aligned_cols=116  Identities=16%  Similarity=0.170  Sum_probs=72.5

Q ss_pred             cCCCceeeccccccHHHHHHHhc--CCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEeccCCeEEEEeccHHH
Q 011136          279 VGFNGVFVHLLVDDIAKFFQTYS--SNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG  356 (493)
Q Consensus       279 ~gl~~~y~~~~~~~l~~~~~~l~--~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G  356 (493)
                      -|+|..=..+++.+.++|++.++  .+.|.|++.-==-..+.+..++++-..    .            .+--+|-|-.|
T Consensus       107 agid~~pi~ldv~~~dE~v~~vk~~~p~f~~i~lED~~~p~af~il~r~r~~----~------------~Ipvf~DDiqG  170 (388)
T 1vl6_A          107 ADIDAFPICLSESEEEKIISIVKSLEPSFGGINLEDIGAPKCFRILQRLSEE----M------------NIPVFHDDQQG  170 (388)
T ss_dssp             HCCEEEEEECSCCCHHHHHHHHHHTGGGCSEEEECSCCTTHHHHHHHHHHHH----C------------SSCEEEHHHHH
T ss_pred             cCCceEeEEeCCCCHHHHHHHHHHcCCcceEeCHhhcCCHHHHHHHHHhhhh----c------------Ccceecccccc
Confidence            36775555566677888877774  367888866431233445544443332    1            12234445322


Q ss_pred             --H--HHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC----hHHH
Q 011136          357 --A--ISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT----YGES  417 (493)
Q Consensus       357 --~--~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~----~~~a  417 (493)
                        .  .+++...++-       .+.++++.+++|+|||.+|.+++..|...|+ +|+++||+    .+|+
T Consensus       171 TasV~lAal~~A~~i-------~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~  233 (388)
T 1vl6_A          171 TAVVVSAAFLNALKL-------TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDP  233 (388)
T ss_dssp             HHHHHHHHHHHHHHH-------HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSG
T ss_pred             HHHHHHHHHHHHHHH-------hCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCc
Confidence              2  1222211110       1246788999999999999999999999999 99999998    7664

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.76  E-value=0.0016  Score=67.13  Aligned_cols=47  Identities=21%  Similarity=0.191  Sum_probs=41.1

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+.+++|+|+|+|++|++++..+..+|++|++++|+.++.+.+.+ ++
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~-~G  215 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES-LG  215 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH-TT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC
Confidence            456899999999999999999999999999999999988776644 44

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.73  E-value=0.0038  Score=60.29  Aligned_cols=46  Identities=28%  Similarity=0.325  Sum_probs=40.7

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~-i~v~~R~~~~a~~la~~~~  425 (493)
                      .+.++.|||+|.+|++++..|.+.|++ |++++|+.++++++++.++
T Consensus         9 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g   55 (266)
T 3d1l_A            9 EDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVE   55 (266)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTT
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC
Confidence            346799999999999999999999996 9999999999998887654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.73  E-value=0.0042  Score=62.36  Aligned_cols=42  Identities=24%  Similarity=0.218  Sum_probs=39.3

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      -++.|||+|.+|.+++..|.+.|.+|++++|+.++++.+.+.
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~   56 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVS   56 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHh
Confidence            479999999999999999999999999999999999988775

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.71  E-value=0.0015  Score=70.86  Aligned_cols=51  Identities=12%  Similarity=0.186  Sum_probs=45.3

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh-------------------HHHHHHHHHhhhhh
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY-------------------GESLTFLRLMSWLL  428 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~-------------------~~a~~la~~~~~~~  428 (493)
                      .+++++|+|+|+||.|..++.+|+..|+ +|+|++++.                   .|++.+++.+...+
T Consensus       323 kL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iN  393 (615)
T 4gsl_A          323 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF  393 (615)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhC
Confidence            3678899999999999999999999999 999999865                   68988888887665

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.65  E-value=0.007  Score=60.55  Aligned_cols=94  Identities=9%  Similarity=-0.007  Sum_probs=62.2

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccc-ccCCceEEEEec
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLF-TWHLKFFIAANI  457 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~-~~~~~~~i~~n~  457 (493)
                      .+++.|||+|.+|.+++..|.+.|+  +|++++|+.++.+.+.+ .+...         ....++++ .. .+.++++-+
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~-~G~~~---------~~~~~~~~~~~-~~aDvVila  101 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-LGIID---------EGTTSIAKVED-FSPDFVMLS  101 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-TTSCS---------EEESCTTGGGG-GCCSEEEEC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-CCCcc---------hhcCCHHHHhh-ccCCEEEEe
Confidence            3689999999999999999999998  99999999988776543 22110         11233332 22 456677777


Q ss_pred             cccCCchhhHhhhhhHHHHhhccceEeeeccc
Q 011136          458 IHLGNHLEWVTAAFNLFFYLTCNSYVVMEKTE  489 (493)
Q Consensus       458 tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (493)
                      +|.....+.    +......+-++.+|+|-+-
T Consensus       102 vp~~~~~~v----l~~l~~~l~~~~iv~d~~S  129 (314)
T 3ggo_A          102 SPVRTFREI----AKKLSYILSEDATVTDQGS  129 (314)
T ss_dssp             SCGGGHHHH----HHHHHHHSCTTCEEEECCS
T ss_pred             CCHHHHHHH----HHHHhhccCCCcEEEECCC
Confidence            776543332    2222333457889999653

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.62  E-value=0.0032  Score=61.96  Aligned_cols=83  Identities=22%  Similarity=0.121  Sum_probs=58.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccc-----eE-EEEeecccccCCc
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFD-----SV-IVIRILLFTWHLK  450 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~-----~~-~v~~~l~~~~~~~  450 (493)
                      .|+||.+||-|+ +|.|++++..|++.|++|++++|+.++.++++++++..... ...|     .+ .+++...+.| ..
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~-~~~Dv~~~~~v~~~~~~~~~~~-G~  103 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVG-IQADSANLAELDRLYEKVKAEA-GR  103 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEE-EECCTTCHHHHHHHHHHHHHHH-SC
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEE-EEecCCCHHHHHHHHHHHHHHc-CC
Confidence            478999999987 78999999999999999999999999999998887543210 0001     00 0111122445 56


Q ss_pred             eEEEEeccccCC
Q 011136          451 FFIAANIIHLGN  462 (493)
Q Consensus       451 ~~i~~n~tplG~  462 (493)
                      .+|++|.-..+.
T Consensus       104 iDiLVNNAG~~~  115 (273)
T 4fgs_A          104 IDVLFVNAGGGS  115 (273)
T ss_dssp             EEEEEECCCCCC
T ss_pred             CCEEEECCCCCC
Confidence            789988776543

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.61  E-value=0.0052  Score=64.11  Aligned_cols=43  Identities=30%  Similarity=0.308  Sum_probs=39.1

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      ..+.|++++|+|+|.+|++++..|...|++|++++|++.++..
T Consensus       216 ~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~  258 (435)
T 3gvp_A          216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQ  258 (435)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             ceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHH
Confidence            4678999999999999999999999999999999999877654

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.60  E-value=0.004  Score=66.10  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=40.9

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      ..+++.|||+|-||.+++..|++.|++|+++||+.++++++.+..
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~   58 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAEN   58 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHS
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhC
Confidence            456899999999999999999999999999999999999988754

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.59  E-value=0.0028  Score=62.74  Aligned_cols=43  Identities=16%  Similarity=0.091  Sum_probs=39.5

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      .+++.|||+|.+|.+++..|.+.|++|++++|+.++++.+.+.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~   49 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc
Confidence            4689999999999999999999999999999999999888763

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.58  E-value=0.0023  Score=62.38  Aligned_cols=85  Identities=24%  Similarity=0.215  Sum_probs=59.6

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcc--cccc-----eE-EEEeeccccc
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNT--LLFD-----SV-IVIRILLFTW  447 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~--~~~~-----~~-~v~~~l~~~~  447 (493)
                      .+|+||.++|-|+ +|.|++++..|++.|++|++.+|+.++.++.++.+.......  ...|     .+ ..++...+.|
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            4688999999987 779999999999999999999999999999988876543210  0001     00 0011112445


Q ss_pred             CCceEEEEeccccCC
Q 011136          448 HLKFFIAANIIHLGN  462 (493)
Q Consensus       448 ~~~~~i~~n~tplG~  462 (493)
                       ...+|++|.-.+..
T Consensus        85 -G~iDiLVNNAG~~~   98 (255)
T 4g81_D           85 -IHVDILINNAGIQY   98 (255)
T ss_dssp             -CCCCEEEECCCCCC
T ss_pred             -CCCcEEEECCCCCC
Confidence             56789998776544

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.58  E-value=0.0048  Score=59.12  Aligned_cols=51  Identities=22%  Similarity=0.276  Sum_probs=45.2

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      ..+++|.++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+...
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   59 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEE   59 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence            4578999999988 78999999999999999999999999999988876543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.58  E-value=0.0059  Score=60.67  Aligned_cols=76  Identities=16%  Similarity=0.063  Sum_probs=53.5

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      .-|+|.|||+|-||.+++..|+ .|++|+++||++++++++.+.+...     ....++.-.++++ . .+.++++.++|
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~-----~~~~i~~~~~~~~-~-~~aDlVieavp   82 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEE-----LLSKIEFTTTLEK-V-KDCDIVMEAVF   82 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGG-----GGGGEEEESSCTT-G-GGCSEEEECCC
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHH-----HhCCeEEeCCHHH-H-cCCCEEEEcCc
Confidence            3589999999999999999999 9999999999999998887763111     1112333344432 2 45566666666


Q ss_pred             cCCc
Q 011136          460 LGNH  463 (493)
Q Consensus       460 lG~~  463 (493)
                      -...
T Consensus        83 e~~~   86 (293)
T 1zej_A           83 EDLN   86 (293)
T ss_dssp             SCHH
T ss_pred             CCHH
Confidence            5553

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.57  E-value=0.0027  Score=64.95  Aligned_cols=44  Identities=16%  Similarity=0.237  Sum_probs=39.4

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .++.++.|||.|-||.+++..|.+.|++|+++||+.++++.+.+
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~   63 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALER   63 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence            34678999999999999999999999999999999999988865

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.55  E-value=0.0022  Score=61.76  Aligned_cols=44  Identities=18%  Similarity=0.274  Sum_probs=40.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .++.|||+|.+|++++..|.+.|.+|.+++|+.++++++++.++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g   47 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLA   47 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcC
Confidence            47999999999999999999999999999999999999887654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.53  E-value=0.0026  Score=62.84  Aligned_cols=41  Identities=15%  Similarity=0.106  Sum_probs=38.3

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      +++.|||.|-+|++++..|++.|++|++++|+.++++.+.+
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~   56 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAE   56 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            57999999999999999999999999999999999988875

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.52  E-value=0.0045  Score=52.91  Aligned_cols=44  Identities=20%  Similarity=0.281  Sum_probs=39.0

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +.+++|+|+|.+|+.++..|.+.|++|++++|+.++.+.+.+.+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~   47 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI   47 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc
Confidence            46899999999999999999999999999999999988877643

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.52  E-value=0.0059  Score=59.96  Aligned_cols=45  Identities=22%  Similarity=0.352  Sum_probs=40.6

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC---eEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA---RVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~---~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++.|||+|-||.+++..|.+.|+   +|++++|+.++++++++.++
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~g   50 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCG   50 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTC
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcC
Confidence            3579999999999999999999997   89999999999999987653

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.51  E-value=0.006  Score=64.70  Aligned_cols=46  Identities=35%  Similarity=0.382  Sum_probs=41.8

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ..+.||+|+|+|+|++|++++..|+..|++|++++|+..++++.+.
T Consensus       261 ~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~  306 (488)
T 3ond_A          261 VMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATM  306 (488)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            4578999999999999999999999999999999999988776654

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.50  E-value=0.0045  Score=59.28  Aligned_cols=49  Identities=29%  Similarity=0.412  Sum_probs=44.1

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.++
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   54 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIG   54 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC
Confidence            4577999999997 789999999999999999999999999999888664

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.48  E-value=0.0095  Score=58.36  Aligned_cols=42  Identities=17%  Similarity=0.190  Sum_probs=38.6

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      .++.|||+|.+|.+++..|.+.|++|++++|+.++.+.+.+.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~   45 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN   45 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC
Confidence            479999999999999999999999999999999998888764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.48  E-value=0.0014  Score=64.25  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=38.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      +++.|||+|.+|.+++..|.+.|++|++++|+.++++.+.+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~   43 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVAL   43 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHH
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC
Confidence            368999999999999999999999999999999999888763

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.46  E-value=0.0047  Score=61.07  Aligned_cols=41  Identities=32%  Similarity=0.323  Sum_probs=37.6

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++|.|||+|.||.+++..|++.|++|++++|+.++++++.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~   56 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKK   56 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence            68999999999999999999999999999999998887644

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.43  E-value=0.0055  Score=58.41  Aligned_cols=50  Identities=26%  Similarity=0.339  Sum_probs=44.9

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   55 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVA   55 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            4577999999998 8899999999999999999999999999998887754

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.42  E-value=0.0025  Score=63.45  Aligned_cols=43  Identities=23%  Similarity=0.266  Sum_probs=39.5

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      +..++.|||+|-+|.+++..|++.|++|+++||+.++++.+.+
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   62 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVE   62 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            3468999999999999999999999999999999999988874

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.41  E-value=0.0037  Score=64.39  Aligned_cols=45  Identities=20%  Similarity=0.096  Sum_probs=40.7

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .+.+++|+|+|+|.+|+.++..+..+|++|++++|+.++.+.+.+
T Consensus       181 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~  225 (381)
T 3p2y_A          181 TVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS  225 (381)
T ss_dssp             EECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            356889999999999999999999999999999999998877755

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.41  E-value=0.0044  Score=61.93  Aligned_cols=94  Identities=16%  Similarity=0.067  Sum_probs=62.1

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++ + .+...+...            .++++-. .+.++++.
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~-~~~~~g~~~------------~~l~ell-~~aDvV~l  202 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-E-RAKEVNGKF------------VDLETLL-KESDVVTI  202 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-H-HHHHTTCEE------------CCHHHHH-HHCSEEEE
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-h-hHhhcCccc------------cCHHHHH-hhCCEEEE
Confidence            4678999999999999999999999999999999999876 2 333332111            1232222 45678888


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|+.-.-..+..  ...|..+-++.+++|-
T Consensus       203 ~~p~~~~t~~li~--~~~l~~mk~ga~lin~  231 (307)
T 1wwk_A          203 HVPLVESTYHLIN--EERLKLMKKTAILINT  231 (307)
T ss_dssp             CCCCSTTTTTCBC--HHHHHHSCTTCEEEEC
T ss_pred             ecCCChHHhhhcC--HHHHhcCCCCeEEEEC
Confidence            8887654333321  1234444456676664

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.40  E-value=0.006  Score=60.11  Aligned_cols=137  Identities=20%  Similarity=0.292  Sum_probs=85.6

Q ss_pred             EEeec-CCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136          256 FGIIG-KPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (493)
Q Consensus       256 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  329 (493)
                      .-++| +|-+++.-- .-....++.|+......++-    ++|.+.++.+ .++++.|.-|-.|.-..    +|+    -
T Consensus        37 vilvg~dpas~~Yv~-~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~----id~----~  107 (281)
T 2c2x_A           37 TILVGDDPGSQAYVR-GKHADCAKVGITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKH----LDE----N  107 (281)
T ss_dssp             EEEESCCHHHHHHHH-HHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTT----SCH----H
T ss_pred             EEEeCCChhhHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCC----CCH----H
Confidence            34566 444444332 33456788999877655542    3677777777 67899999999996322    221    1


Q ss_pred             HHhcceeeEEEeccCC-------eEE-EE----eccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchH-HHHH
Q 011136          330 KSIGAVNCIIRRQSDG-------KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGA-GKAL  396 (493)
Q Consensus       330 ~~igAvNti~~~~~~g-------~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGa-ara~  396 (493)
                      +.+.+++--.--  ||       +++ |.    -.-..|++..|++.           +.+++||+++|+|+|.+ |+.+
T Consensus       108 ~i~~~I~p~KDV--DG~~p~n~g~l~~g~~~~~PcTp~gi~~ll~~~-----------~i~l~gk~vvVvG~s~iVG~p~  174 (281)
T 2c2x_A          108 AALERVDPAKDA--DGLHPTNLGRLVLGTPAPLPCTPRGIVHLLRRY-----------DISIAGAHVVVIGRGVTVGRPL  174 (281)
T ss_dssp             HHHHHSCGGGBT--TSCCHHHHHHHHHTCCCCCCHHHHHHHHHHHHT-----------TCCCTTCEEEEECCCTTTHHHH
T ss_pred             HHHhhcCccCCc--cCCChhhHHHHhCCCCCCCCChHHHHHHHHHHc-----------CCCCCCCEEEEECCCcHHHHHH
Confidence            112222111000  11       111 10    11256777777653           25789999999999985 9999


Q ss_pred             HHHHHhC--CCeEEEEeCCh
Q 011136          397 AYGAKAK--GARVVIANRTY  414 (493)
Q Consensus       397 ~~~L~~~--g~~i~v~~R~~  414 (493)
                      +..|...  |++|++++|+.
T Consensus       175 A~lL~~~g~~atVtv~h~~t  194 (281)
T 2c2x_A          175 GLLLTRRSENATVTLCHTGT  194 (281)
T ss_dssp             HHHHTSTTTCCEEEEECTTC
T ss_pred             HHHHhcCCCCCEEEEEECch
Confidence            9999999  78999998865

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.39  E-value=0.0047  Score=53.54  Aligned_cols=42  Identities=21%  Similarity=0.306  Sum_probs=38.8

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .++++|+|+|..|++++..|.+.|++|++++|++++.+.+.+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~   47 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLED   47 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence            468999999999999999999999999999999999888765

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=96.39  E-value=0.0075  Score=63.93  Aligned_cols=99  Identities=18%  Similarity=0.178  Sum_probs=60.9

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccC--CceEEEEecccc
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWH--LKFFIAANIIHL  460 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~--~~~~i~~n~tpl  460 (493)
                      ++.|||+|.||.+++..|++.|++|+++||+.++++++.+..+...    ....+....++++-..  ++.++++-++|-
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~----~~~~i~~~~~~~e~v~~l~~aDvVilaVp~   78 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAP----FAGNLKAFETMEAFAASLKKPRKALILVQA   78 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTST----TGGGEEECSCHHHHHHHBCSSCEEEECCCC
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCC----CCCCeEEECCHHHHHhcccCCCEEEEecCC
Confidence            5889999999999999999999999999999999999987644210    0112333334332221  023455545554


Q ss_pred             CCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          461 GNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       461 G~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      +-+   +.+........+-++.+|+|.+
T Consensus        79 ~~~---v~~vl~~l~~~l~~g~iIId~s  103 (478)
T 1pgj_A           79 GAA---TDSTIEQLKKVFEKGDILVDTG  103 (478)
T ss_dssp             SHH---HHHHHHHHHHHCCTTCEEEECC
T ss_pred             hHH---HHHHHHHHHhhCCCCCEEEECC
Confidence            432   2222222222233577888764

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.38  E-value=0.0049  Score=59.18  Aligned_cols=50  Identities=20%  Similarity=0.147  Sum_probs=44.0

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+...
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   54 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA   54 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            456899999997 78999999999999999999999999999998877543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=96.37  E-value=0.0062  Score=58.56  Aligned_cols=48  Identities=25%  Similarity=0.302  Sum_probs=43.3

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++.+.++
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   53 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG   53 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC
Confidence            467899999987 789999999999999999999999999998887764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.36  E-value=0.005  Score=57.96  Aligned_cols=78  Identities=15%  Similarity=0.105  Sum_probs=52.5

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh-hhhcccccceEEEEeecccccCCceEEE
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW-LLLNTLLFDSVIVIRILLFTWHLKFFIA  454 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~-~~~~~~~~~~~~v~~~l~~~~~~~~~i~  454 (493)
                      ..+++++++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++.+. +. ..   ...| +.  .++.+.+ .+.+++
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~-~~~~~---~~~D-l~--~~~~~~~-~~~D~v   88 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER-GASDI---VVAN-LE--EDFSHAF-ASIDAV   88 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT-TCSEE---EECC-TT--SCCGGGG-TTCSEE
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC-CCceE---EEcc-cH--HHHHHHH-cCCCEE
Confidence            4578999999998 8999999999999999999999999998877542 11 11   0111 00  3333344 466778


Q ss_pred             EeccccCC
Q 011136          455 ANIIHLGN  462 (493)
Q Consensus       455 ~n~tplG~  462 (493)
                      +|..+..-
T Consensus        89 i~~ag~~~   96 (236)
T 3e8x_A           89 VFAAGSGP   96 (236)
T ss_dssp             EECCCCCT
T ss_pred             EECCCCCC
Confidence            87776553

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.36  E-value=0.0047  Score=62.42  Aligned_cols=94  Identities=19%  Similarity=0.118  Sum_probs=59.7

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.++++.|||.|.+|++++..|+..|++|++++|+.++ + .+..++.           .. .++++-. .+.++++.
T Consensus       146 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~-~~~~~g~-----------~~-~~l~~~l-~~aDvVil  210 (334)
T 2dbq_A          146 YDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-E-VERELNA-----------EF-KPLEDLL-RESDFVVL  210 (334)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-H-HHHHHCC-----------EE-CCHHHHH-HHCSEEEE
T ss_pred             cCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-h-hHhhcCc-----------cc-CCHHHHH-hhCCEEEE
Confidence            4678999999999999999999999999999999999876 3 2222221           00 1222222 34567777


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|....-..+..  ...+..+-++.++++-
T Consensus       211 ~vp~~~~t~~~i~--~~~~~~mk~~ailIn~  239 (334)
T 2dbq_A          211 AVPLTRETYHLIN--EERLKLMKKTAILINI  239 (334)
T ss_dssp             CCCCCTTTTTCBC--HHHHHHSCTTCEEEEC
T ss_pred             CCCCChHHHHhhC--HHHHhcCCCCcEEEEC
Confidence            7777654322221  1223333346666654

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=96.35  E-value=0.0039  Score=63.38  Aligned_cols=75  Identities=15%  Similarity=0.062  Sum_probs=54.8

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEE----------eCC---------hHHHHHHHHHhhhhhhcccccceEE
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIA----------NRT---------YGESLTFLRLMSWLLLNTLLFDSVI  438 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~----------~R~---------~~~a~~la~~~~~~~~~~~~~~~~~  438 (493)
                      +++++|+|+|+||.|..++..|+..|+ +|+|+          ||.         ..||+.+++.+...+..    -++.
T Consensus        34 L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~----v~v~  109 (346)
T 1y8q_A           34 LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPM----VDVK  109 (346)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTT----SEEE
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCC----eEEE
Confidence            457899999999999999999999999 99999          554         46899999888866521    1233


Q ss_pred             EEee-c----ccccCCceEEEEecc
Q 011136          439 VIRI-L----LFTWHLKFFIAANII  458 (493)
Q Consensus       439 v~~~-l----~~~~~~~~~i~~n~t  458 (493)
                      +... +    .+.+ .+++++++++
T Consensus       110 ~~~~~~~~~~~~~~-~~~dvVv~~~  133 (346)
T 1y8q_A          110 VDTEDIEKKPESFF-TQFDAVCLTC  133 (346)
T ss_dssp             EECSCGGGCCHHHH-TTCSEEEEES
T ss_pred             EEecccCcchHHHh-cCCCEEEEcC
Confidence            3321 1    1223 5678888775

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.35  E-value=0.0037  Score=59.76  Aligned_cols=47  Identities=21%  Similarity=0.282  Sum_probs=39.5

Q ss_pred             ccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHH
Q 011136          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG-ESLTFLR  422 (493)
Q Consensus       376 ~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~-~a~~la~  422 (493)
                      ..+++|++|||+|+|.+|...+..|.+.|++|+|++++.. ..+.|++
T Consensus        26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~   73 (223)
T 3dfz_A           26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEA   73 (223)
T ss_dssp             EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHH
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Confidence            3578999999999999999999999999999999998754 3445554

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.33  E-value=0.0065  Score=58.87  Aligned_cols=48  Identities=29%  Similarity=0.437  Sum_probs=43.2

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      ..+++|.+||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+
T Consensus        17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l   65 (267)
T 1vl8_A           17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKL   65 (267)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            5678999999987 78999999999999999999999999888887766

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.33  E-value=0.018  Score=55.73  Aligned_cols=39  Identities=21%  Similarity=0.240  Sum_probs=36.2

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      ++.|||+|.+|.+++..|.+.|++|++++|+.++++.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~   40 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV   40 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            689999999999999999999999999999999988764

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.33  E-value=0.0055  Score=58.08  Aligned_cols=51  Identities=31%  Similarity=0.365  Sum_probs=45.4

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+...
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   61 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSA   61 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc
Confidence            3578999999998 78999999999999999999999999999988877644

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.32  E-value=0.0057  Score=59.42  Aligned_cols=49  Identities=27%  Similarity=0.356  Sum_probs=44.1

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.++
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~   75 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELG   75 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC
Confidence            3577899999988 789999999999999999999999999999888764

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.32  E-value=0.0048  Score=61.81  Aligned_cols=94  Identities=15%  Similarity=0.078  Sum_probs=61.9

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++..  +...+...            .++++-. ++.++++.
T Consensus       138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~--~~~~g~~~------------~~l~ell-~~aDvVvl  202 (313)
T 2ekl_A          138 LELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK--AEKINAKA------------VSLEELL-KNSDVISL  202 (313)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH--HHHTTCEE------------CCHHHHH-HHCSEEEE
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH--HHhcCcee------------cCHHHHH-hhCCEEEE
Confidence            467899999999999999999999999999999999987642  33332111            1232222 45677887


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|+.-.-..+..  ...+..+-++.+++|-
T Consensus       203 ~~P~~~~t~~li~--~~~l~~mk~ga~lIn~  231 (313)
T 2ekl_A          203 HVTVSKDAKPIID--YPQFELMKDNVIIVNT  231 (313)
T ss_dssp             CCCCCTTSCCSBC--HHHHHHSCTTEEEEES
T ss_pred             eccCChHHHHhhC--HHHHhcCCCCCEEEEC
Confidence            8887654322221  1234444557777664

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.32  E-value=0.007  Score=57.79  Aligned_cols=48  Identities=35%  Similarity=0.445  Sum_probs=42.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~   52 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELT   52 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            356899999987 789999999999999999999999999888887764

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.31  E-value=0.0037  Score=62.15  Aligned_cols=45  Identities=29%  Similarity=0.310  Sum_probs=40.7

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      ...+++.|||.|-+|.+++..|.+.|++|+++||+.++++++++.
T Consensus         7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~   51 (306)
T 3l6d_A            7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAA   51 (306)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC
Confidence            345689999999999999999999999999999999999988764

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=96.31  E-value=0.052  Score=51.31  Aligned_cols=118  Identities=17%  Similarity=0.169  Sum_probs=70.7

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (493)
Q Consensus        26 Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (493)
                      +...+...+.++....++.+.+.|++++|+|...   ....+.++.+++..+-.++ -.      |.. .+. +   -.+
T Consensus        18 ~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~---~~~~~~i~~l~~~~~~~~v-ga------gtv-i~~-d---~~~   82 (214)
T 1wbh_A           18 VVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRT---ECAVDAIRAIAKEVPEAIV-GA------GTV-LNP-Q---QLA   82 (214)
T ss_dssp             EEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCS---TTHHHHHHHHHHHCTTSEE-EE------ESC-CSH-H---HHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCC---hhHHHHHHHHHHHCcCCEE-ee------CEE-EEH-H---HHH
Confidence            3345778899999999999989999999999532   2224456656665542222 11      222 222 2   345


Q ss_pred             HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       106 ~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      .+++.|+|+|-.- ..+.+..+.-   +..+..+|...|    ||+  |    ..++.+.|+|++|+
T Consensus        83 ~A~~aGAd~v~~p-~~d~~v~~~~---~~~g~~~i~G~~----t~~--e----~~~A~~~Gad~v~~  135 (214)
T 1wbh_A           83 EVTEAGAQFAISP-GLTEPLLKAA---TEGTIPLIPGIS----TVS--E----LMLGMDYGLKEFKF  135 (214)
T ss_dssp             HHHHHTCSCEEES-SCCHHHHHHH---HHSSSCEEEEES----SHH--H----HHHHHHTTCCEEEE
T ss_pred             HHHHcCCCEEEcC-CCCHHHHHHH---HHhCCCEEEecC----CHH--H----HHHHHHCCCCEEEE
Confidence            6788899999543 2222222222   223455555555    332  3    45667899999999

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.31  E-value=0.014  Score=58.33  Aligned_cols=44  Identities=16%  Similarity=0.179  Sum_probs=37.5

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      ....++.|||+|.+|.+++..|++.|.+|+++ |+.++.+.+.+.
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~   60 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEAT   60 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHH
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhC
Confidence            34578999999999999999999999999999 888888888753

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.31  E-value=0.0028  Score=54.40  Aligned_cols=43  Identities=21%  Similarity=0.318  Sum_probs=36.8

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      +++++++|+|+|++|+.++..|.+.|++|++++|+.++.+.+.
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~   46 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA   46 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            3467899999999999999999999999999999988776553

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.30  E-value=0.0069  Score=58.49  Aligned_cols=50  Identities=22%  Similarity=0.127  Sum_probs=44.7

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ..+++|.+||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~   54 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQ   54 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            3577999999987 7899999999999999999999999999988887654

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.30  E-value=0.0036  Score=60.00  Aligned_cols=44  Identities=18%  Similarity=0.205  Sum_probs=40.2

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC----eEEEEeCChHHHHHHHHHhh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA----RVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~----~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++.|||+|.+|.+++..|.+.|+    +|++++|+.++++++++.++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g   50 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYG   50 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHC
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhC
Confidence            469999999999999999999997    99999999999999987654

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.29  E-value=0.0089  Score=63.24  Aligned_cols=43  Identities=30%  Similarity=0.390  Sum_probs=39.9

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      .++.|||+|.||++++..|++.|++|+++||+.++++++.+..
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~   48 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEH   48 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhC
Confidence            4699999999999999999999999999999999999998765

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.28  E-value=0.0035  Score=55.60  Aligned_cols=44  Identities=23%  Similarity=0.291  Sum_probs=38.6

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      ...+++++|+|+|.+|+.++..|...|++|++++|++++.+.+.
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~   59 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLN   59 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSC
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence            34578999999999999999999999999999999998876554

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.27  E-value=0.0069  Score=57.91  Aligned_cols=48  Identities=33%  Similarity=0.405  Sum_probs=43.3

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.++
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   51 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIG   51 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC
Confidence            467899999987 789999999999999999999999999998887763

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.27  E-value=0.0068  Score=61.94  Aligned_cols=48  Identities=23%  Similarity=0.234  Sum_probs=42.4

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++++|+|+|+|++|++++..++..|++|++++|+.++.+.+.+.++
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g  210 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFG  210 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcC
Confidence            466899999999999999999999999999999999998877765443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.27  E-value=0.0052  Score=59.13  Aligned_cols=48  Identities=31%  Similarity=0.337  Sum_probs=43.9

Q ss_pred             ccCCCEEEEEec-c-hHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-G-GAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-G-Gaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|++||.|+ | |.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~   68 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLA   68 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHH
Confidence            478999999999 8 89999999999999999999999999988888764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.27  E-value=0.023  Score=55.22  Aligned_cols=40  Identities=13%  Similarity=0.159  Sum_probs=36.0

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFL  421 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la  421 (493)
                      +++.|||+|.+|.+++..|.+.|+  +|++++|+.++.+.+.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~   43 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV   43 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Confidence            479999999999999999999997  8999999998887654

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.27  E-value=0.017  Score=56.50  Aligned_cols=41  Identities=12%  Similarity=0.144  Sum_probs=38.0

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .++.|||+ |.+|++++..|.+.|++|++++|+.++++.+.+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~   53 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG   53 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh
Confidence            48999999 999999999999999999999999999888765

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.25  E-value=0.0075  Score=57.93  Aligned_cols=48  Identities=27%  Similarity=0.338  Sum_probs=43.2

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.++
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   53 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG   53 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC
Confidence            467899999987 789999999999999999999999999999888764

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.25  E-value=0.0056  Score=59.10  Aligned_cols=50  Identities=26%  Similarity=0.335  Sum_probs=44.6

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~   56 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQ   56 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            3578999999987 7899999999999999999999999999998887654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.25  E-value=0.0064  Score=59.32  Aligned_cols=50  Identities=28%  Similarity=0.334  Sum_probs=44.9

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .++++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~   78 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAG   78 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            3578999999997 7899999999999999999999999999998887754

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.25  E-value=0.016  Score=59.11  Aligned_cols=43  Identities=23%  Similarity=0.224  Sum_probs=39.5

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      ..++.|||+|.+|.+++..|++.|.+|++++|++++++.+.+.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~   71 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAE   71 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc
Confidence            3579999999999999999999999999999999999888764

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.24  E-value=0.006  Score=63.23  Aligned_cols=45  Identities=22%  Similarity=0.335  Sum_probs=41.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhCC---CeEEEEeCChHHHHHHHHHhhh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKG---ARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g---~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ++++|+|+|++|++++..|++.|   .+|++++|+.++++++++.+..
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~   49 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKA   49 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhh
Confidence            47999999999999999999998   3899999999999999988764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.23  E-value=0.027  Score=56.20  Aligned_cols=80  Identities=15%  Similarity=0.027  Sum_probs=53.1

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      ..++.|||+|.+|.+++..|+..|. +|++++|+.++++..+..+...........++..-.++ +.. .+.++++.+++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~-~~aDiVi~avg   81 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADI-SGSDVVIITAS   81 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGG-TTCSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHh-CCCCEEEEeCC
Confidence            3589999999999999999999998 99999999988887644333221100011234433333 222 45677777775


Q ss_pred             cCC
Q 011136          460 LGN  462 (493)
Q Consensus       460 lG~  462 (493)
                      .+-
T Consensus        82 ~p~   84 (317)
T 2ewd_A           82 IPG   84 (317)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            444

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.23  E-value=0.0065  Score=58.27  Aligned_cols=50  Identities=24%  Similarity=0.277  Sum_probs=43.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      .+++|.+||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+...
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   54 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRS   54 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh
Confidence            356899999998 78999999999999999999999999999998876543

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.22  E-value=0.0058  Score=58.75  Aligned_cols=49  Identities=31%  Similarity=0.378  Sum_probs=43.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   52 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ   52 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            467899999987 7899999999999999999999999999998887653

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.22  E-value=0.0077  Score=58.09  Aligned_cols=51  Identities=25%  Similarity=0.307  Sum_probs=45.0

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+...
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   58 (264)
T 3ucx_A            7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT   58 (264)
T ss_dssp             CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc
Confidence            3467999999998 67999999999999999999999999999998877543

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.22  E-value=0.0094  Score=57.20  Aligned_cols=49  Identities=24%  Similarity=0.219  Sum_probs=43.3

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus         5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   54 (260)
T 2ae2_A            5 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR   54 (260)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            3567899999987 789999999999999999999999998888877664

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.21  E-value=0.0063  Score=57.85  Aligned_cols=49  Identities=24%  Similarity=0.342  Sum_probs=44.1

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   59 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK   59 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc
Confidence            4578999999997 789999999999999999999999999998887664

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.21  E-value=0.008  Score=58.45  Aligned_cols=51  Identities=27%  Similarity=0.408  Sum_probs=44.7

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+...
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~   58 (281)
T 3svt_A            7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEAL   58 (281)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT
T ss_pred             cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            3577999999987 78999999999999999999999999999988877543

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.21  E-value=0.0086  Score=57.52  Aligned_cols=48  Identities=29%  Similarity=0.475  Sum_probs=42.6

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~   52 (263)
T 3ai3_A            4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLK   52 (263)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence            467899999987 789999999999999999999999998888877664

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=96.21  E-value=0.067  Score=50.92  Aligned_cols=118  Identities=19%  Similarity=0.182  Sum_probs=68.8

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (493)
Q Consensus        26 Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (493)
                      |..-+...+.+++...++.+.+.|++++|+|..   +.+..+.++.+++..+ .++.-.      |. .... +   -.+
T Consensus        19 ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k---~~~~~~~i~~l~~~~~-~l~vga------Gt-vl~~-d---~~~   83 (224)
T 1vhc_A           19 IVPVIALDNADDILPLADTLAKNGLSVAEITFR---SEAAADAIRLLRANRP-DFLIAA------GT-VLTA-E---QVV   83 (224)
T ss_dssp             EEEEECCSSGGGHHHHHHHHHHTTCCEEEEETT---STTHHHHHHHHHHHCT-TCEEEE------ES-CCSH-H---HHH
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHcCCCEEEEecc---CchHHHHHHHHHHhCc-CcEEee------Cc-EeeH-H---HHH
Confidence            434568889999999999998999999999953   2223445666666553 233222      11 1222 2   345


Q ss_pred             HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       106 ~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      .+++.|+|+|=.- ..+.+..+....  .+...+++ .|    ||  .|    ..++.+.|+|++|+
T Consensus        84 ~A~~aGAd~v~~p-~~d~~v~~~ar~--~g~~~i~G-v~----t~--~e----~~~A~~~Gad~vk~  136 (224)
T 1vhc_A           84 LAKSSGADFVVTP-GLNPKIVKLCQD--LNFPITPG-VN----NP--MA----IEIALEMGISAVKF  136 (224)
T ss_dssp             HHHHHTCSEEECS-SCCHHHHHHHHH--TTCCEECE-EC----SH--HH----HHHHHHTTCCEEEE
T ss_pred             HHHHCCCCEEEEC-CCCHHHHHHHHH--hCCCEEec-cC----CH--HH----HHHHHHCCCCEEEE
Confidence            6788899999221 222222222221  23334444 44    33  23    45577899999999

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.19  E-value=0.007  Score=57.91  Aligned_cols=49  Identities=29%  Similarity=0.353  Sum_probs=43.8

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus         6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   55 (248)
T 3op4_A            6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD   55 (248)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc
Confidence            467899999987 7899999999999999999999999999998887653

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.18  E-value=0.0057  Score=62.17  Aligned_cols=96  Identities=13%  Similarity=0.036  Sum_probs=60.8

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHH-hCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAK-AKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~-~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      ..+.|+++.|||.|.+|++++..|. ..|++|++++|+.++.+... .++..           ...++++-. .+.++++
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~-~~g~~-----------~~~~l~ell-~~aDvVi  225 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEK-ALGAE-----------RVDSLEELA-RRSDCVS  225 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHH-HHTCE-----------ECSSHHHHH-HHCSEEE
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHh-hcCcE-----------EeCCHHHHh-ccCCEEE
Confidence            4678999999999999999999999 99999999999876654432 22211           111232222 3456777


Q ss_pred             eccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          456 NIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       456 n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      .++|+.-.-..+...  ..+..+-++.++++-
T Consensus       226 l~vp~~~~t~~li~~--~~l~~mk~gailin~  255 (348)
T 2w2k_A          226 VSVPYMKLTHHLIDE--AFFAAMKPGSRIVNT  255 (348)
T ss_dssp             ECCCCSGGGTTCBCH--HHHHHSCTTEEEEEC
T ss_pred             EeCCCChHHHHHhhH--HHHhcCCCCCEEEEC
Confidence            777776543333211  223333346666664

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.18  E-value=0.0066  Score=58.97  Aligned_cols=48  Identities=21%  Similarity=0.358  Sum_probs=42.9

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      .+|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+...
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~   51 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA   51 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc
Confidence            4789999997 78999999999999999999999999999998877543

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.17  E-value=0.009  Score=56.68  Aligned_cols=47  Identities=26%  Similarity=0.337  Sum_probs=42.1

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+
T Consensus         8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   55 (254)
T 2wsb_A            8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL   55 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            467899999987 78999999999999999999999999888877765

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.17  E-value=0.0089  Score=57.63  Aligned_cols=50  Identities=16%  Similarity=0.241  Sum_probs=43.2

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus         9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   59 (267)
T 1iy8_A            9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLE   59 (267)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            3467899999987 7899999999999999999999999988888776643

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.16  E-value=0.0084  Score=60.69  Aligned_cols=94  Identities=14%  Similarity=0.062  Sum_probs=62.0

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.  .+..++...            .++++-. .+.++++.
T Consensus       161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~g~~~------------~~l~ell-~~aDvV~l  225 (335)
T 2g76_A          161 TELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE--VSASFGVQQ------------LPLEEIW-PLCDFITV  225 (335)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH--HHHHTTCEE------------CCHHHHG-GGCSEEEE
T ss_pred             cCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh--hhhhcCcee------------CCHHHHH-hcCCEEEE
Confidence            46789999999999999999999999999999999987653  233332111            1333222 45678888


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|+.-.-..+..  ...|..+-++.+++|-
T Consensus       226 ~~P~t~~t~~li~--~~~l~~mk~gailIN~  254 (335)
T 2g76_A          226 HTPLLPSTTGLLN--DNTFAQCKKGVRVVNC  254 (335)
T ss_dssp             CCCCCTTTTTSBC--HHHHTTSCTTEEEEEC
T ss_pred             ecCCCHHHHHhhC--HHHHhhCCCCcEEEEC
Confidence            8887654333321  1234444456676664

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.16  E-value=0.0089  Score=63.50  Aligned_cols=42  Identities=26%  Similarity=0.261  Sum_probs=39.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      .++.|||.|-||.+++..|++.|++|+++||+.++++++.+.
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~   46 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN   46 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc
Confidence            479999999999999999999999999999999999988764

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=96.16  E-value=0.0091  Score=56.36  Aligned_cols=47  Identities=36%  Similarity=0.487  Sum_probs=41.8

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC   51 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc
Confidence            467899999998 88999999999999999999999998888877654

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.16  E-value=0.0076  Score=57.80  Aligned_cols=46  Identities=37%  Similarity=0.463  Sum_probs=41.5

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   49 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL   49 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            56899999987 88999999999999999999999999888887765

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.15  E-value=0.0094  Score=57.25  Aligned_cols=43  Identities=26%  Similarity=0.327  Sum_probs=39.2

Q ss_pred             EEEEEecchHHHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g-~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++.|||+|.+|.+++..|.+.| .+|++++|+.++++++.+.++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g   45 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELG   45 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcC
Confidence            6899999999999999999999 799999999999999887643

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.15  E-value=0.0032  Score=62.74  Aligned_cols=42  Identities=17%  Similarity=0.161  Sum_probs=39.4

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      ++|-+||-|-||..++..|.+.|++|+++||+.++++.|++.
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~   45 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAA   45 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHc
Confidence            589999999999999999999999999999999999998763

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.15  E-value=0.0073  Score=58.15  Aligned_cols=49  Identities=35%  Similarity=0.426  Sum_probs=43.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+..
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   75 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVA   75 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
Confidence            467899999987 8899999999999999999999999999998887654

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.14  E-value=0.0092  Score=57.28  Aligned_cols=48  Identities=27%  Similarity=0.330  Sum_probs=42.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   52 (260)
T 2z1n_A            4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIA   52 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            356899999987 789999999999999999999999999888877664

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.14  E-value=0.0089  Score=58.99  Aligned_cols=50  Identities=24%  Similarity=0.264  Sum_probs=44.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+...
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~   78 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ   78 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc
Confidence            367899999997 78999999999999999999999999999988877543

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.12  E-value=0.0099  Score=57.61  Aligned_cols=49  Identities=29%  Similarity=0.306  Sum_probs=43.3

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   66 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWR   66 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            3467899999987 789999999999999999999999998888877664

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.11  E-value=0.016  Score=57.85  Aligned_cols=93  Identities=12%  Similarity=0.000  Sum_probs=57.0

Q ss_pred             CEEEEEecchHHHHHHHHHHhCC-CeEEEEeCCh---HHHHHHHHHhhhhhhcccccceEEEEe-ecccccCCceEEEEe
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTY---GESLTFLRLMSWLLLNTLLFDSVIVIR-ILLFTWHLKFFIAAN  456 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g-~~i~v~~R~~---~~a~~la~~~~~~~~~~~~~~~~~v~~-~l~~~~~~~~~i~~n  456 (493)
                      .++.|||+|-+|.+++..|++.| ++|++++|+.   +++++..+.+.....          .. ++.+-. .+.++++=
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~----------~~~s~~e~~-~~aDvVi~   93 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV----------EPLDDVAGI-ACADVVLS   93 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC----------EEESSGGGG-GGCSEEEE
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC----------CCCCHHHHH-hcCCEEEE
Confidence            57999999999999999999999 8999999997   445444444332221          12 232222 33445554


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeeccc
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKTE  489 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (493)
                      ++|-....+.+    ......+.++.+|+|.+-
T Consensus        94 avp~~~~~~~~----~~i~~~l~~~~ivv~~st  122 (317)
T 4ezb_A           94 LVVGAATKAVA----ASAAPHLSDEAVFIDLNS  122 (317)
T ss_dssp             CCCGGGHHHHH----HHHGGGCCTTCEEEECCS
T ss_pred             ecCCHHHHHHH----HHHHhhcCCCCEEEECCC
Confidence            44444333322    222233346788888764

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.11  E-value=0.0078  Score=57.71  Aligned_cols=49  Identities=24%  Similarity=0.327  Sum_probs=43.0

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~   59 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQ   59 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            3467899999987 789999999999999999999999998888777664

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.11  E-value=0.0066  Score=58.34  Aligned_cols=50  Identities=24%  Similarity=0.270  Sum_probs=44.8

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   58 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQ   58 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            4578999999987 7899999999999999999999999999998887654

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.10  E-value=0.01  Score=55.77  Aligned_cols=45  Identities=22%  Similarity=0.296  Sum_probs=41.1

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|++||.|+ ||.|++++..|++.|++|+++.|+.++.+++++.+.
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   47 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELM   47 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            688999997 789999999999999999999999999998887765

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.10  E-value=0.01  Score=57.13  Aligned_cols=48  Identities=21%  Similarity=0.259  Sum_probs=42.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   52 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR   52 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            356899999987 789999999999999999999999999888877664

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.09  E-value=0.0095  Score=58.12  Aligned_cols=47  Identities=26%  Similarity=0.386  Sum_probs=42.0

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++.+.++
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~   50 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG   50 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTB
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcC
Confidence            56899999987 789999999999999999999999999988877653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.09  E-value=0.018  Score=60.60  Aligned_cols=41  Identities=20%  Similarity=0.092  Sum_probs=38.7

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .++.|||+|-+|.+++..|++.|++|++++|+.++++.+.+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~   43 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNS   43 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHc
Confidence            47999999999999999999999999999999999999876

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.09  E-value=0.0074  Score=58.35  Aligned_cols=49  Identities=33%  Similarity=0.401  Sum_probs=43.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~   66 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGE   66 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            477899999987 7899999999999999999999999999988877654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.09  E-value=0.007  Score=54.94  Aligned_cols=45  Identities=11%  Similarity=0.083  Sum_probs=40.0

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAK-GARVVIANRTYGESLTFLR  422 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~-g~~i~v~~R~~~~a~~la~  422 (493)
                      +..+.+++|+|+|.+|+.++..|.+. |++|++++|++++.+.+.+
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~   81 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS   81 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH
Confidence            35567899999999999999999998 9999999999999887654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.09  E-value=0.021  Score=55.52  Aligned_cols=50  Identities=22%  Similarity=0.290  Sum_probs=42.0

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC----------------hHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT----------------YGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~----------------~~~a~~la~~~~~  426 (493)
                      ..+++|.+||.|+ ||.|++++..|++.|++|++++|+                .++.+++++.+..
T Consensus         7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (286)
T 3uve_A            7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKG   73 (286)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHT
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhh
Confidence            3577999999998 789999999999999999999887                6777777766543

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.09  E-value=0.0096  Score=58.07  Aligned_cols=49  Identities=24%  Similarity=0.321  Sum_probs=43.7

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|.+||.|+ ||.|++++..|++.|++|++++|+.++++++++.++
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   72 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIG   72 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC
Confidence            4577899999987 789999999999999999999999999998887653

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.09  E-value=0.0065  Score=59.43  Aligned_cols=50  Identities=24%  Similarity=0.283  Sum_probs=41.2

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ..++||.+||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~   79 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGG   79 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence            3567999999987 7899999999999999999999999999988887654

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.08  E-value=0.011  Score=56.38  Aligned_cols=48  Identities=23%  Similarity=0.281  Sum_probs=42.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~   58 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLR   58 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            467899999987 789999999999999999999999988888777664

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.08  E-value=0.0049  Score=60.49  Aligned_cols=41  Identities=20%  Similarity=0.208  Sum_probs=37.8

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .++.|||+|.+|++++..|.+.|++|++++|+.++++.+.+
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~   45 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVA   45 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHT
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            57999999999999999999999999999999999888765

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.07  E-value=0.0095  Score=57.94  Aligned_cols=48  Identities=29%  Similarity=0.347  Sum_probs=43.1

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|.+||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   72 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLA   72 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            478999999988 689999999999999999999999999888877664

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.07  E-value=0.0076  Score=58.25  Aligned_cols=51  Identities=31%  Similarity=0.376  Sum_probs=44.9

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+...
T Consensus         6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~   57 (267)
T 3t4x_A            6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQ   57 (267)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence            3567899999987 78999999999999999999999999998888876543

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.06  E-value=0.01  Score=57.86  Aligned_cols=48  Identities=33%  Similarity=0.479  Sum_probs=43.0

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~   74 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLS   74 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            467899999987 789999999999999999999999999888877664

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.06  E-value=0.011  Score=57.02  Aligned_cols=48  Identities=27%  Similarity=0.365  Sum_probs=42.4

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   52 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA   52 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh
Confidence            366899999987 789999999999999999999999999888877654

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=96.06  E-value=0.011  Score=57.30  Aligned_cols=49  Identities=31%  Similarity=0.350  Sum_probs=43.3

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   78 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKS   78 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHh
Confidence            467899999987 7899999999999999999999999998888776653

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.06  E-value=0.0061  Score=59.28  Aligned_cols=50  Identities=26%  Similarity=0.380  Sum_probs=44.8

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++||++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~   72 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRN   72 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            4578999999987 7899999999999999999999999999998887754

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.01  Score=63.33  Aligned_cols=42  Identities=31%  Similarity=0.332  Sum_probs=39.3

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ..++.|||+|-||.+++..|++.|++|+++||+.++++++.+
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~   51 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLA   51 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHc
Confidence            457999999999999999999999999999999999998876

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.05  E-value=0.0087  Score=56.75  Aligned_cols=49  Identities=31%  Similarity=0.294  Sum_probs=43.3

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+...
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~   52 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK   52 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            46889999987 78999999999999999999999999999888876543

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.05  E-value=0.0075  Score=59.00  Aligned_cols=48  Identities=29%  Similarity=0.389  Sum_probs=43.0

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      .+++||+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+
T Consensus        12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~   60 (291)
T 3rd5_A           12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM   60 (291)
T ss_dssp             CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence            3578999999987 88999999999999999999999999998887655

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.04  E-value=0.0074  Score=60.99  Aligned_cols=40  Identities=28%  Similarity=0.337  Sum_probs=36.9

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~  181 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV  181 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch
Confidence            3578999999999999999999999999999999999876

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.03  E-value=0.011  Score=57.44  Aligned_cols=48  Identities=25%  Similarity=0.305  Sum_probs=42.6

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~   67 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELR   67 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            367899999987 789999999999999999999999998888877664

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.02  E-value=0.007  Score=59.23  Aligned_cols=49  Identities=31%  Similarity=0.399  Sum_probs=43.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++|.+||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~   54 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAG   54 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence            367899999987 7899999999999999999999999999999887753

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.02  E-value=0.0055  Score=61.77  Aligned_cols=95  Identities=15%  Similarity=0.030  Sum_probs=60.1

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|+..|++|++++|+.++.+... .++           +... ++++-. .+.++++.
T Consensus       151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g-----------~~~~-~l~e~l-~~aDvVi~  216 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAA-EFQ-----------AEFV-STPELA-AQSDFIVV  216 (330)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHH-TTT-----------CEEC-CHHHHH-HHCSEEEE
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHH-hcC-----------ceeC-CHHHHH-hhCCEEEE
Confidence            467899999999999999999999999999999999877655432 111           1111 232222 34577777


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|....-..+..  ...+..+-++.++++-
T Consensus       217 ~vp~~~~t~~~i~--~~~~~~mk~gailIn~  245 (330)
T 2gcg_A          217 ACSLTPATEGLCN--KDFFQKMKETAVFINI  245 (330)
T ss_dssp             CCCCCTTTTTCBS--HHHHHHSCTTCEEEEC
T ss_pred             eCCCChHHHHhhC--HHHHhcCCCCcEEEEC
Confidence            7777644333321  1223333345666654

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=96.02  E-value=0.013  Score=62.02  Aligned_cols=41  Identities=27%  Similarity=0.292  Sum_probs=38.2

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .++.|||+|.||.+++..|++.|++|+++||+.++++++.+
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~   43 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA   43 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh
Confidence            36899999999999999999999999999999999998876

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.02  E-value=0.026  Score=56.80  Aligned_cols=77  Identities=16%  Similarity=-0.040  Sum_probs=52.0

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      ..++.|||+|.+|.++++.|+..|. +|++++++.++++..+..+...........+++.-.++++.. .+.++++.+.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~-~~aDiVi~a~   86 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAAL-TGADCVIVTA   86 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHH-TTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHh-CCCCEEEEcc
Confidence            3589999999999999999999998 999999999988886655543321111122444434444232 4455566555

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.02  E-value=0.0089  Score=57.97  Aligned_cols=49  Identities=29%  Similarity=0.325  Sum_probs=43.4

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++.+|+.++.+++++.++
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~   72 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG   72 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC
Confidence            3577999999987 789999999999999999999999999988877653

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=96.02  E-value=0.077  Score=49.06  Aligned_cols=117  Identities=21%  Similarity=0.216  Sum_probs=75.9

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC--CCcEEE-EeccCCCCCCCCCCHHHHH
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES--PVPTLF-TYRPIWEGGQYDGDENERV  101 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~--~~PiI~-T~R~~~eGG~~~~~~~~~~  101 (493)
                      .+...+...+.++....++.+.+.|+|++|+-+.. +  ...+.++.+++..  +.++-. |+.          +.++  
T Consensus        11 ~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~-~--~~~~~i~~ir~~~~~~~~ig~~~v~----------~~~~--   75 (205)
T 1wa3_A           11 KIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTV-P--DADTVIKELSFLKEKGAIIGAGTVT----------SVEQ--   75 (205)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTS-T--THHHHHHHTHHHHHTTCEEEEESCC----------SHHH--
T ss_pred             CEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCC-h--hHHHHHHHHHHHCCCCcEEEecccC----------CHHH--
Confidence            35567889999999999998888899999985542 1  2233466666543  233333 222          2222  


Q ss_pred             HHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       102 ~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                        .+.+.+.|+||| +--....+.++...   +.+..+|.-.|    ||  .+    ..++.++|+|++|+
T Consensus        76 --~~~a~~~Gad~i-v~~~~~~~~~~~~~---~~g~~vi~g~~----t~--~e----~~~a~~~Gad~vk~  130 (205)
T 1wa3_A           76 --CRKAVESGAEFI-VSPHLDEEISQFCK---EKGVFYMPGVM----TP--TE----LVKAMKLGHTILKL  130 (205)
T ss_dssp             --HHHHHHHTCSEE-ECSSCCHHHHHHHH---HHTCEEECEEC----SH--HH----HHHHHHTTCCEEEE
T ss_pred             --HHHHHHcCCCEE-EcCCCCHHHHHHHH---HcCCcEECCcC----CH--HH----HHHHHHcCCCEEEE
Confidence              456677899999 76665555554433   34778887544    33  22    55678899999997

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.02  E-value=0.01  Score=56.63  Aligned_cols=46  Identities=26%  Similarity=0.279  Sum_probs=40.9

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   49 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV   49 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc
Confidence            45789999997 78999999999999999999999999888877654

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.01  E-value=0.011  Score=55.99  Aligned_cols=45  Identities=29%  Similarity=0.415  Sum_probs=41.0

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.++
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   48 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG   48 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc
Confidence            678999997 789999999999999999999999999998887763

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=96.01  E-value=0.015  Score=60.83  Aligned_cols=43  Identities=35%  Similarity=0.389  Sum_probs=39.2

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      ..+.||+++|+|.|.+|++++..|...|++|++++|++.++.+
T Consensus       243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~  285 (464)
T 3n58_A          243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQ  285 (464)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHH
T ss_pred             CcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhH
Confidence            5688999999999999999999999999999999999877544

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.01  E-value=0.01  Score=57.76  Aligned_cols=48  Identities=21%  Similarity=0.126  Sum_probs=41.4

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      +++|.+||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~   70 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRA   70 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            56889999997 7899999999999999999999999999998887754

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.00  E-value=0.01  Score=59.87  Aligned_cols=47  Identities=26%  Similarity=0.365  Sum_probs=40.2

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++++++.|||+|-+|.+++..|...|++|++++|+.+++.+.+...+
T Consensus        14 l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G   60 (338)
T 1np3_A           14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHG   60 (338)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTT
T ss_pred             hcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCC
Confidence            45788999999999999999999999999999999887666665443

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.00  E-value=0.0085  Score=58.42  Aligned_cols=50  Identities=18%  Similarity=0.190  Sum_probs=42.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|+++.|+.++.+++++.+...
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~   59 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS   59 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            456899999997 88999999999999999999999999998888876543

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.00  E-value=0.0078  Score=58.80  Aligned_cols=48  Identities=29%  Similarity=0.342  Sum_probs=42.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|.+||.|+ ||.|++++..|++.|++|++++|+.++.+++++.++
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~   74 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIG   74 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC
Confidence            467899999987 789999999999999999999999999998887763

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.99  E-value=0.0095  Score=57.60  Aligned_cols=47  Identities=28%  Similarity=0.323  Sum_probs=41.7

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   51 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE   51 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence            56899999987 789999999999999999999999998888876553

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=95.99  E-value=0.0083  Score=60.24  Aligned_cols=95  Identities=13%  Similarity=-0.044  Sum_probs=59.9

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANR-TYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R-~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|++++| +.++.  .+..++...           ..++++-. .+.++++
T Consensus       142 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~--~~~~~g~~~-----------~~~l~ell-~~aDvVi  207 (320)
T 1gdh_A          142 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS--DEASYQATF-----------HDSLDSLL-SVSQFFS  207 (320)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH--HHHHHTCEE-----------CSSHHHHH-HHCSEEE
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh--hhhhcCcEE-----------cCCHHHHH-hhCCEEE
Confidence            467899999999999999999999999999999999 87653  233332211           11332222 4456777


Q ss_pred             eccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          456 NIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       456 n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      .++|+.-.-..+..  ...+..+-++.+++|-
T Consensus       208 l~~p~~~~t~~~i~--~~~l~~mk~gailIn~  237 (320)
T 1gdh_A          208 LNAPSTPETRYFFN--KATIKSLPQGAIVVNT  237 (320)
T ss_dssp             ECCCCCTTTTTCBS--HHHHTTSCTTEEEEEC
T ss_pred             EeccCchHHHhhcC--HHHHhhCCCCcEEEEC
Confidence            77777643222221  1223333456666654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.99  E-value=0.011  Score=51.58  Aligned_cols=41  Identities=15%  Similarity=0.161  Sum_probs=38.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++++|+|+|.+|+.++..|.+.|++|++++|++++.+.+.+
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~   48 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE   48 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence            47999999999999999999999999999999999988765

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=95.99  E-value=0.012  Score=57.68  Aligned_cols=49  Identities=24%  Similarity=0.234  Sum_probs=42.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++|.+||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~   74 (283)
T 3v8b_A           25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVG   74 (283)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            456899999987 7899999999999999999999999999999887754

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=95.99  E-value=0.0097  Score=57.13  Aligned_cols=47  Identities=28%  Similarity=0.372  Sum_probs=41.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   56 (263)
T 3ak4_A            9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL   56 (263)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            467899999987 78999999999999999999999998888877654

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=95.98  E-value=0.0088  Score=58.13  Aligned_cols=51  Identities=24%  Similarity=0.259  Sum_probs=44.7

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      ..+++|.+||.|+ ||.|++++..|++.|++|++++|+.++++++++.+...
T Consensus        24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~   75 (270)
T 3ftp_A           24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA   75 (270)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            3477899999987 78999999999999999999999999999888876543

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=95.97  E-value=0.0074  Score=59.53  Aligned_cols=50  Identities=24%  Similarity=0.275  Sum_probs=44.6

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~   87 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGE   87 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTT
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence            3578899999987 7899999999999999999999999999998887754

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.96  E-value=0.018  Score=55.98  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=36.8

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      ++.|||+|.+|++++..|.. |++|++++|+.++++.+.+.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~   42 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE   42 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC
Confidence            58999999999999999999 99999999999999888764

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=95.95  E-value=0.01  Score=56.93  Aligned_cols=47  Identities=28%  Similarity=0.385  Sum_probs=41.8

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++|.+||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   50 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQ   50 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            46889999987 789999999999999999999999999888877664

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=95.95  E-value=0.013  Score=55.19  Aligned_cols=47  Identities=28%  Similarity=0.408  Sum_probs=41.6

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+..
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC   51 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc
Confidence            467899999998 88999999999999999999999998888777643

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.94  E-value=0.0068  Score=59.41  Aligned_cols=42  Identities=19%  Similarity=0.221  Sum_probs=38.2

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      .++.|||+|.+|++++..|...|++|++++|+.++++.+.+.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~   47 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA   47 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC
Confidence            379999999999999999999999999999999998887653

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=95.94  E-value=0.012  Score=58.72  Aligned_cols=49  Identities=24%  Similarity=0.291  Sum_probs=44.0

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+.+|++||.|+ ||.|++++..|++.|++|+++.|+.++.+++.+.+..
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~   54 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEA   54 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence            467899999997 7899999999999999999999999999998887654

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=95.94  E-value=0.098  Score=49.05  Aligned_cols=117  Identities=21%  Similarity=0.202  Sum_probs=68.9

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (493)
                      .|...+...+.++....++.+.+.|++++|+|...   .+..+.++.+++ .+  +.+-.      |.. .. .   +-+
T Consensus        14 ~ii~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k~---~~~~~~i~~~~~-~~--~~~ga------g~v-l~-~---d~~   76 (207)
T 2yw3_A           14 RLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRT---EKGLEALKALRK-SG--LLLGA------GTV-RS-P---KEA   76 (207)
T ss_dssp             CEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECSS---THHHHHHHHHTT-SS--CEEEE------ESC-CS-H---HHH
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCC---hHHHHHHHHHhC-CC--CEEEe------CeE-ee-H---HHH
Confidence            34456778888888888888888899999999532   122334555544 22  22211      221 22 2   344


Q ss_pred             HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       105 ~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      +.+++.|++++-.- ..+.+..+....   .+..+|...|    ||  .|    ..++.+.|+|++|+
T Consensus        77 ~~A~~~GAd~v~~~-~~d~~v~~~~~~---~g~~~i~G~~----t~--~e----~~~A~~~Gad~v~~  130 (207)
T 2yw3_A           77 EAALEAGAAFLVSP-GLLEEVAALAQA---RGVPYLPGVL----TP--TE----VERALALGLSALKF  130 (207)
T ss_dssp             HHHHHHTCSEEEES-SCCHHHHHHHHH---HTCCEEEEEC----SH--HH----HHHHHHTTCCEEEE
T ss_pred             HHHHHcCCCEEEcC-CCCHHHHHHHHH---hCCCEEecCC----CH--HH----HHHHHHCCCCEEEE
Confidence            56788899999543 233333333322   3445565555    32  23    45566789999999

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=95.94  E-value=0.012  Score=57.04  Aligned_cols=48  Identities=29%  Similarity=0.434  Sum_probs=42.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus         6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   54 (270)
T 1yde_A            6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP   54 (270)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence            467899999987 789999999999999999999999998888877653

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=95.93  E-value=0.0092  Score=57.10  Aligned_cols=47  Identities=21%  Similarity=0.314  Sum_probs=42.0

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   50 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL   50 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc
Confidence            356899999987 78999999999999999999999999988887765

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.93  E-value=0.042  Score=55.36  Aligned_cols=47  Identities=17%  Similarity=0.223  Sum_probs=42.0

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      ..++.|+|+|.+|.++++.|+..|.  +|++++++.++++..+.++...
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~   53 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHG   53 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhc
Confidence            4689999999999999999999886  8999999999999988777754

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=95.93  E-value=0.18  Score=48.12  Aligned_cols=118  Identities=16%  Similarity=0.122  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcE
Q 011136           35 VDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADY  114 (493)
Q Consensus        35 ~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dy  114 (493)
                      ..++.+-++.+.+.|+.+++.  .      ..+.++.+++..++|+|--+|..-.|-.+-.++  +.+-++.+.+.|+|+
T Consensus        35 ~~~~~~~A~a~~~~Ga~~i~~--~------~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~--~~~~i~~~~~aGad~  104 (229)
T 3q58_A           35 PEIVAAMAQAAASAGAVAVRI--E------GIENLRTVRPHLSVPIIGIIKRDLTGSPVRITP--YLQDVDALAQAGADI  104 (229)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEE--E------SHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSC--SHHHHHHHHHHTCSE
T ss_pred             cchHHHHHHHHHHCCCcEEEE--C------CHHHHHHHHHhcCCCEEEEEeecCCCCceEeCc--cHHHHHHHHHcCCCE
Confidence            566677777777789999876  1      235788888889999987666422221121222  223345567889999


Q ss_pred             EEEEccc--ccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          115 IDVELQV--AREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       115 IDIEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      |-+....  .++.++++. ..++.+..++++.|+          .+..+++.+.|+|++-+
T Consensus       105 I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t----------~eea~~a~~~Gad~Ig~  155 (229)
T 3q58_A          105 IAFDASFRSRPVDIDSLLTRIRLHGLLAMADCST----------VNEGISCHQKGIEFIGT  155 (229)
T ss_dssp             EEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSS----------HHHHHHHHHTTCSEEEC
T ss_pred             EEECccccCChHHHHHHHHHHHHCCCEEEEecCC----------HHHHHHHHhCCCCEEEe
Confidence            9887653  223333333 233457889998883          23346777899999853

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=95.92  E-value=0.013  Score=56.55  Aligned_cols=50  Identities=16%  Similarity=0.203  Sum_probs=43.8

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+..
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~   77 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG   77 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHh
Confidence            4577899999987 7899999999999999999999999988888776643

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=95.91  E-value=0.007  Score=59.02  Aligned_cols=49  Identities=27%  Similarity=0.403  Sum_probs=43.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ++++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~   79 (275)
T 4imr_A           30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIA   79 (275)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            477999999987 7899999999999999999999999999888887654

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=95.91  E-value=0.0098  Score=56.35  Aligned_cols=49  Identities=27%  Similarity=0.381  Sum_probs=43.1

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|++||.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus         7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   56 (255)
T 1fmc_A            7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ   56 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence            3467899999987 789999999999999999999999998888877654

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=95.89  E-value=0.01  Score=57.49  Aligned_cols=49  Identities=27%  Similarity=0.327  Sum_probs=43.7

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.++
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   56 (271)
T 3tzq_B            7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVG   56 (271)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC
Confidence            3577999999997 889999999999999999999999999888887663

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=95.89  E-value=0.014  Score=59.49  Aligned_cols=96  Identities=16%  Similarity=0.064  Sum_probs=63.6

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+....+.. ...+...           ..++++-. .+.++++.
T Consensus       160 ~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~-----------~~~l~ell-~~aDvV~l  226 (351)
T 3jtm_A          160 YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELE-KETGAKF-----------VEDLNEML-PKCDVIVI  226 (351)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHH-HHHCCEE-----------CSCHHHHG-GGCSEEEE
T ss_pred             ccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHH-HhCCCeE-----------cCCHHHHH-hcCCEEEE
Confidence            46889999999999999999999999999999999986544333 2222111           12343333 55788888


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|+.-.-..+..  ...|..+-++.+++|-
T Consensus       227 ~~Plt~~t~~li~--~~~l~~mk~gailIN~  255 (351)
T 3jtm_A          227 NMPLTEKTRGMFN--KELIGKLKKGVLIVNN  255 (351)
T ss_dssp             CSCCCTTTTTCBS--HHHHHHSCTTEEEEEC
T ss_pred             CCCCCHHHHHhhc--HHHHhcCCCCCEEEEC
Confidence            8888644333321  1234444456677664

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=95.87  E-value=0.014  Score=56.04  Aligned_cols=47  Identities=28%  Similarity=0.429  Sum_probs=41.4

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~   52 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALH   52 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            56889999987 789999999999999999999999988887776654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=95.87  E-value=0.014  Score=57.11  Aligned_cols=50  Identities=28%  Similarity=0.346  Sum_probs=43.8

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus        14 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~   64 (303)
T 1yxm_A           14 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQA   64 (303)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            3467899999987 7899999999999999999999999998888876643

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.86  E-value=0.011  Score=57.51  Aligned_cols=47  Identities=21%  Similarity=0.328  Sum_probs=41.9

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   51 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIIL   51 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            56889999987 789999999999999999999999999888877664

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=95.86  E-value=0.011  Score=55.95  Aligned_cols=48  Identities=27%  Similarity=0.362  Sum_probs=41.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   51 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG   51 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh
Confidence            356899999987 789999999999999999999999988888776653

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=95.85  E-value=0.015  Score=56.84  Aligned_cols=50  Identities=26%  Similarity=0.332  Sum_probs=43.6

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus        22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~   72 (302)
T 1w6u_A           22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISS   72 (302)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            3477899999987 7899999999999999999999999988888776643

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=95.84  E-value=0.012  Score=56.14  Aligned_cols=48  Identities=27%  Similarity=0.407  Sum_probs=41.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   52 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLG   52 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC-
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHH
Confidence            456899999987 789999999999999999999999998888776553

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.84  E-value=0.026  Score=52.77  Aligned_cols=39  Identities=18%  Similarity=0.261  Sum_probs=32.4

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      ..+..+++.|||+|.+|.+++..|.+.|.+|++++|+.+
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            346678999999999999999999999999999999876

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.83  E-value=0.011  Score=57.18  Aligned_cols=46  Identities=26%  Similarity=0.334  Sum_probs=41.5

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   50 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI   50 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56889999987 88999999999999999999999999988887766

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=95.83  E-value=0.01  Score=60.44  Aligned_cols=96  Identities=14%  Similarity=0.090  Sum_probs=63.3

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+... + .+...+..           ...++++-+ .+.++++.
T Consensus       156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~-~~~~~g~~-----------~~~~l~ell-~~aDiV~l  221 (352)
T 3gg9_A          156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-E-RARADGFA-----------VAESKDALF-EQSDVLSV  221 (352)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-H-HHHHTTCE-----------ECSSHHHHH-HHCSEEEE
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-H-HHHhcCce-----------EeCCHHHHH-hhCCEEEE
Confidence            5678999999999999999999999999999999998533 2 22222211           112444333 45678888


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      ++|+.-.-..+..  ...|..+-++.+++|-.
T Consensus       222 ~~Plt~~t~~li~--~~~l~~mk~gailIN~a  251 (352)
T 3gg9_A          222 HLRLNDETRSIIT--VADLTRMKPTALFVNTS  251 (352)
T ss_dssp             CCCCSTTTTTCBC--HHHHTTSCTTCEEEECS
T ss_pred             eccCcHHHHHhhC--HHHHhhCCCCcEEEECC
Confidence            8887754443321  13344444567776643

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=95.82  E-value=0.012  Score=55.97  Aligned_cols=48  Identities=29%  Similarity=0.403  Sum_probs=41.4

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYGESLTFLRLMSW  426 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R-~~~~a~~la~~~~~  426 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|+++.| +.++.+++++.+..
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   51 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKK   51 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence            45789999987 78999999999999999999999 88888888776643

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=95.82  E-value=0.012  Score=55.51  Aligned_cols=48  Identities=25%  Similarity=0.398  Sum_probs=42.1

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus         4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   52 (248)
T 2pnf_A            4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIA   52 (248)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHH
Confidence            466899999987 789999999999999999999999998888877654

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=95.81  E-value=0.0054  Score=60.04  Aligned_cols=40  Identities=20%  Similarity=0.229  Sum_probs=37.0

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++.|||+|.+|++++..|.+.|++|++++|+.++++.+.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~   41 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQD   41 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHT
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            5889999999999999999999999999999999888765

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=95.81  E-value=0.013  Score=56.03  Aligned_cols=49  Identities=24%  Similarity=0.196  Sum_probs=43.1

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus        10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   59 (266)
T 1xq1_A           10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQ   59 (266)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            4567899999987 789999999999999999999999998888877654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=95.80  E-value=0.011  Score=57.57  Aligned_cols=47  Identities=26%  Similarity=0.335  Sum_probs=41.1

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +.+|.+||.|+ ||.|++++..|++.|++|++++|+.++.+++++.++
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~   73 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG   73 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC
Confidence            56788999987 789999999999999999999999999999888764

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=95.80  E-value=0.013  Score=57.12  Aligned_cols=48  Identities=31%  Similarity=0.447  Sum_probs=43.0

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   73 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCL   73 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            467899999998 889999999999999999999999999888877654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=95.79  E-value=0.003  Score=63.77  Aligned_cols=95  Identities=20%  Similarity=0.206  Sum_probs=62.6

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+.++.+.+..              .....++++-. .+.++++.
T Consensus       133 ~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--------------~~~~~~l~ell-~~aDvV~l  197 (324)
T 3evt_A          133 STLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE--------------TVAFTATADAL-ATANFIVN  197 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--------------EEEGGGCHHHH-HHCSEEEE
T ss_pred             ccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--------------ccccCCHHHHH-hhCCEEEE
Confidence            5678999999999999999999999999999999998765332211              11112333333 45678888


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      ++|+.-.-..+..  ...|..+-++.+++|-.
T Consensus       198 ~lPlt~~t~~li~--~~~l~~mk~gailIN~a  227 (324)
T 3evt_A          198 ALPLTPTTHHLFS--TELFQQTKQQPMLINIG  227 (324)
T ss_dssp             CCCCCGGGTTCBS--HHHHHTCCSCCEEEECS
T ss_pred             cCCCchHHHHhcC--HHHHhcCCCCCEEEEcC
Confidence            8887654333321  23344445566776643

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=95.78  E-value=0.009  Score=57.24  Aligned_cols=47  Identities=23%  Similarity=0.262  Sum_probs=35.2

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      .+++|.+||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL   51 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC---------
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh
Confidence            467899999998 78999999999999999999999999888877665

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.76  E-value=0.012  Score=57.99  Aligned_cols=47  Identities=23%  Similarity=0.338  Sum_probs=42.2

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~   71 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQIL   71 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            67899999987 789999999999999999999999999888877664

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=95.74  E-value=0.068  Score=50.67  Aligned_cols=113  Identities=14%  Similarity=0.143  Sum_probs=74.1

Q ss_pred             CCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEec---CCCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCC
Q 011136           21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLD---GLKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGD   96 (493)
Q Consensus        21 ~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD---~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~   96 (493)
                      -..++|+-+|..-|+.++.++++.+.+.|+|++++|+=   +.+++.. .+.++.+++.++.|+.+++-...        
T Consensus         4 ~~~~~i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d--------   75 (228)
T 1h1y_A            4 AAAAKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTN--------   75 (228)
T ss_dssp             --CCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSC--------
T ss_pred             ccCCeEEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEecC--------
Confidence            35688999999999999999999988889999999962   2222211 35677787766778888876521        


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEcccccch-hHHHhhcCCCCcEEEEEcc
Q 011136           97 ENERVDVLRLAMELGADYIDVELQVAREF-NDSIRGKKPEKCKVIVSSH  144 (493)
Q Consensus        97 ~~~~~~ll~~~l~~~~dyIDIEl~~~~~~-~~~l~~~~~~~~kiI~S~H  144 (493)
                      ++.+   ++.+++.|+|+|-+=....++. .+.+...+..+.+++++.+
T Consensus        76 ~~~~---i~~~~~agad~v~vH~~~~~~~~~~~~~~i~~~g~~igv~~~  121 (228)
T 1h1y_A           76 PSDY---VEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLR  121 (228)
T ss_dssp             GGGG---HHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHHH---HHHHHHcCCCEEEECCCCcccHHHHHHHHHHHcCCCEEEEEe
Confidence            1223   4556667899987755544433 2112222234677777774

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=95.74  E-value=0.018  Score=55.29  Aligned_cols=49  Identities=27%  Similarity=0.335  Sum_probs=42.5

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+.
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   61 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIG   61 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhC
Confidence            3467899999987 789999999999999999999999988887776653

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.73  E-value=0.062  Score=56.62  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=35.2

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      ++|.|||+|-||.+++..|++.|++|++++|+.+++.+
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~   92 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQ   92 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHH
Confidence            68999999999999999999999999999999986654

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.73  E-value=0.0079  Score=59.62  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=38.0

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .++.|||+|.+|++++..|...|++|++++|+.++++.+.+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~   71 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ   71 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHH
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence            57999999999999999999999999999999999888765

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.71  E-value=0.0089  Score=60.79  Aligned_cols=95  Identities=17%  Similarity=0.173  Sum_probs=58.8

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.  .+..++...           ..++++-. .+.++++.
T Consensus       164 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~g~~~-----------~~~l~ell-~~aDvV~l  229 (347)
T 1mx3_A          164 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG--VERALGLQR-----------VSTLQDLL-FHSDCVTL  229 (347)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT--HHHHHTCEE-----------CSSHHHHH-HHCSEEEE
T ss_pred             cCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh--hHhhcCCee-----------cCCHHHHH-hcCCEEEE
Confidence            35789999999999999999999999999999999986642  223322111           01222222 34567777


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|+.-.-..+..  ...|..+-++.++++-
T Consensus       230 ~~P~t~~t~~li~--~~~l~~mk~gailIN~  258 (347)
T 1mx3_A          230 HCGLNEHNHHLIN--DFTVKQMRQGAFLVNT  258 (347)
T ss_dssp             CCCCCTTCTTSBS--HHHHTTSCTTEEEEEC
T ss_pred             cCCCCHHHHHHhH--HHHHhcCCCCCEEEEC
Confidence            7776543232321  1223333445666654

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.71  E-value=0.016  Score=55.43  Aligned_cols=45  Identities=27%  Similarity=0.350  Sum_probs=39.6

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++ +++++.+
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~   49 (256)
T 2d1y_A            4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAI   49 (256)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHh
Confidence            56899999987 789999999999999999999999888 7766655

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=95.71  E-value=0.014  Score=55.66  Aligned_cols=47  Identities=21%  Similarity=0.276  Sum_probs=41.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+
T Consensus         9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   56 (265)
T 2o23_A            9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL   56 (265)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh
Confidence            467899999987 78999999999999999999999998888877765

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.70  E-value=0.027  Score=55.92  Aligned_cols=77  Identities=16%  Similarity=0.053  Sum_probs=53.2

Q ss_pred             CEEEEEecchHHHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhhhhhhcccccceEEE-EeecccccCCceEEEEecc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKG--ARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIV-IRILLFTWHLKFFIAANII  458 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g--~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v-~~~l~~~~~~~~~i~~n~t  458 (493)
                      .++.|||+|.+|.++++.|+..|  .+|++++|+.++++.++..+..... .. ...+++ ..+. +.. .+.++++-++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~-~~-~~~~~~~~~d~-~~~-~~aDvViiav   77 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA-NL-EAHGNIVINDW-AAL-ADADVVISTL   77 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GS-SSCCEEEESCG-GGG-TTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhh-hc-CCCeEEEeCCH-HHh-CCCCEEEEec
Confidence            37999999999999999999988  4899999999999998876543221 00 112333 2333 222 4567777777


Q ss_pred             ccCC
Q 011136          459 HLGN  462 (493)
Q Consensus       459 plG~  462 (493)
                      |-.-
T Consensus        78 ~~~~   81 (309)
T 1hyh_A           78 GNIK   81 (309)
T ss_dssp             SCGG
T ss_pred             CCcc
Confidence            6543

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=95.67  E-value=0.018  Score=54.99  Aligned_cols=45  Identities=29%  Similarity=0.332  Sum_probs=40.3

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   47 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN   47 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            578999987 789999999999999999999999999888877664

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.67  E-value=0.026  Score=57.14  Aligned_cols=41  Identities=27%  Similarity=0.175  Sum_probs=38.3

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      ++.|||+|.+|.+++..|++.|++|++++|+.++++.+.+.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~   57 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK   57 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc
Confidence            79999999999999999999999999999999999888765

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=95.67  E-value=0.019  Score=54.18  Aligned_cols=44  Identities=27%  Similarity=0.295  Sum_probs=39.6

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   46 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTH   46 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            578999987 78999999999999999999999999888887765

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=95.66  E-value=0.013  Score=56.04  Aligned_cols=49  Identities=22%  Similarity=0.270  Sum_probs=42.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHh---CCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKA---KGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~---~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++|+++|.|+ ||.|++++..|++   .|++|++++|+.++.+++++.+..
T Consensus         3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~   55 (259)
T 1oaa_A            3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGA   55 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHh
Confidence            467889999987 7899999999999   899999999999999888877643

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=95.66  E-value=0.009  Score=60.42  Aligned_cols=91  Identities=15%  Similarity=0.064  Sum_probs=58.9

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.+      +.           ....++++-. .+.++++.
T Consensus       160 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~------g~-----------~~~~~l~ell-~~aDvVil  221 (333)
T 3ba1_A          160 TKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT------NY-----------TYYGSVVELA-SNSDILVV  221 (333)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC------CS-----------EEESCHHHHH-HTCSEEEE
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc------Cc-----------eecCCHHHHH-hcCCEEEE
Confidence            467899999999999999999999999999999999876532      10           1112333222 44577777


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|+.-.-..+..  ...+..+-++.++++-
T Consensus       222 ~vP~~~~t~~li~--~~~l~~mk~gailIn~  250 (333)
T 3ba1_A          222 ACPLTPETTHIIN--REVIDALGPKGVLINI  250 (333)
T ss_dssp             CSCCCGGGTTCBC--HHHHHHHCTTCEEEEC
T ss_pred             ecCCChHHHHHhh--HHHHhcCCCCCEEEEC
Confidence            7877543222221  1233333346666664

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.65  E-value=0.021  Score=59.72  Aligned_cols=107  Identities=10%  Similarity=-0.115  Sum_probs=65.3

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh---hhcc---cccceEEEEeecccccCCceEEE
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL---LLNT---LLFDSVIVIRILLFTWHLKFFIA  454 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~---~~~~---~~~~~~~v~~~l~~~~~~~~~i~  454 (493)
                      -.++.|||+|-+|.+++..|++ |++|++++|++++.+.+.+.....   .+..   ....+++.-.++.+.. .+.+++
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~-~~aDvV  113 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAY-RNADYV  113 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH-TTCSEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHH-hCCCEE
Confidence            3589999999999999999998 999999999999999887621100   0000   0011344444443222 233444


Q ss_pred             EeccccCCch-------hhHhhhhhHHHHhhccceEeeecccc
Q 011136          455 ANIIHLGNHL-------EWVTAAFNLFFYLTCNSYVVMEKTEI  490 (493)
Q Consensus       455 ~n~tplG~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (493)
                      +=++|-...+       ..+.+....... +.++.+|++++-+
T Consensus       114 iiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv  155 (432)
T 3pid_A          114 IIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTI  155 (432)
T ss_dssp             EECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCC
T ss_pred             EEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCC
Confidence            4455544322       245555444444 5678888887643

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=95.65  E-value=0.022  Score=56.59  Aligned_cols=88  Identities=14%  Similarity=-0.022  Sum_probs=59.5

Q ss_pred             EEEEEecchHHHHH-HHHHHhCCCe-EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccC-CceEEEEeccc
Q 011136          383 LFVVIGAGGAGKAL-AYGAKAKGAR-VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWH-LKFFIAANIIH  459 (493)
Q Consensus       383 ~vlvlGaGGaara~-~~~L~~~g~~-i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~i~~n~tp  459 (493)
                      ++.|||+|++|+.. +.+|.+.|++ +.|++|+.++++++++.++....          ..+.++-.. ++.++++.+||
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~----------~~~~~~~l~~~~~D~V~i~tp   71 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKS----------VTSVEELVGDPDVDAVYVSTT   71 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCC----------BSCHHHHHTCTTCCEEEECSC
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcc----------cCCHHHHhcCCCCCEEEEeCC
Confidence            58999999999997 7788776675 55999999999999987764210          012221111 35678888898


Q ss_pred             cCCchhhHhhhhhHHHHhhccce-Eeeec
Q 011136          460 LGNHLEWVTAAFNLFFYLTCNSY-VVMEK  487 (493)
Q Consensus       460 lG~~~~~~~~~~~~~~~~~~~~~-~~~~~  487 (493)
                      -..+.+.+..     ..  -+++ |++||
T Consensus        72 ~~~h~~~~~~-----al--~~Gk~v~~ek   93 (332)
T 2glx_A           72 NELHREQTLA-----AI--RAGKHVLCEK   93 (332)
T ss_dssp             GGGHHHHHHH-----HH--HTTCEEEECS
T ss_pred             hhHhHHHHHH-----HH--HCCCeEEEeC
Confidence            7777665542     21  2344 77777

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.65  E-value=0.063  Score=53.88  Aligned_cols=47  Identities=26%  Similarity=0.145  Sum_probs=41.5

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      .+++.|+|+|.+|.++++.|+..|. +|++++++.++++..+.++...
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~   52 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQT   52 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhh
Confidence            4689999999999999999999887 9999999999998777766644

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.63  E-value=0.055  Score=54.42  Aligned_cols=78  Identities=15%  Similarity=-0.092  Sum_probs=53.2

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      +..++.|+|+|.+|.++++.|+..|. +|++++++.++++..+.++...........+++.-.+. +.. .+.++++.+.
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~-~~aDiVIiaa   83 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAI-EGADVVIVTA   83 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGG-TTCSEEEECC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHH-CCCCEEEEcc
Confidence            45789999999999999999999998 99999999999887776665543211111233322233 222 5566666665


Q ss_pred             c
Q 011136          459 H  459 (493)
Q Consensus       459 p  459 (493)
                      +
T Consensus        84 g   84 (324)
T 3gvi_A           84 G   84 (324)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=95.63  E-value=0.019  Score=58.27  Aligned_cols=41  Identities=20%  Similarity=0.219  Sum_probs=36.9

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      .+++.|||.|-+|.+++..|...|++|++++|+.++.+.+.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~   48 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAV   48 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            35799999999999999999999999999999998877653

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.63  E-value=0.026  Score=56.68  Aligned_cols=42  Identities=19%  Similarity=0.199  Sum_probs=36.4

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .++|.|||||-||+.++..++..|++|++++++++..++..+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~   47 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALE   47 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence            358999999999999999999999999999999877665443

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=95.62  E-value=0.016  Score=55.29  Aligned_cols=48  Identities=31%  Similarity=0.478  Sum_probs=41.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R-~~~~a~~la~~~~  425 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|+++.| +.++.+++.+.+.
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~   53 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIK   53 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHH
Confidence            356899999987 78999999999999999999999 8888888777654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=95.62  E-value=0.0075  Score=60.36  Aligned_cols=41  Identities=37%  Similarity=0.374  Sum_probs=37.4

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.
T Consensus       140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~  180 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPL  180 (311)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCccc
Confidence            46789999999999999999999999999999999987654

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=95.61  E-value=0.0087  Score=60.44  Aligned_cols=96  Identities=11%  Similarity=0.026  Sum_probs=62.2

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+..+.+.. ..++...            .++++-. .+.++++.
T Consensus       141 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~------------~~l~ell-~~aDvV~l  206 (330)
T 4e5n_A          141 TGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTE-QRLGLRQ------------VACSELF-ASSDFILL  206 (330)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHH-HHHTEEE------------CCHHHHH-HHCSEEEE
T ss_pred             CccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHH-HhcCcee------------CCHHHHH-hhCCEEEE
Confidence            46789999999999999999999999999999999987443322 2222111            1233222 44677888


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      ++|+.-.-..+..  ...|..+-++.+++|-.
T Consensus       207 ~~P~t~~t~~li~--~~~l~~mk~gailIN~a  236 (330)
T 4e5n_A          207 ALPLNADTLHLVN--AELLALVRPGALLVNPC  236 (330)
T ss_dssp             CCCCSTTTTTCBC--HHHHTTSCTTEEEEECS
T ss_pred             cCCCCHHHHHHhC--HHHHhhCCCCcEEEECC
Confidence            8887644333321  13344445577777643

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.61  E-value=0.062  Score=57.00  Aligned_cols=43  Identities=21%  Similarity=0.281  Sum_probs=39.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      ++|.|||+|-||.+++..|++.|++|++++|+.++++++.+.+
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i   48 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGI   48 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH
Confidence            5799999999999999999999999999999999998887653

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.60  E-value=0.074  Score=52.92  Aligned_cols=80  Identities=15%  Similarity=-0.101  Sum_probs=52.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      .+|.|+|+|.+|.++++.|+..|. +|++++++.++++..+.++...........+++.-.+. +.. .+.++++.+.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~-~~aD~Vi~a~g~   80 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADT-ANSDVIVVTSGA   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGG-TTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHH-CCCCEEEEcCCC
Confidence            479999999999999999999997 99999999988887766555422110111233332333 233 556677766654


Q ss_pred             CCc
Q 011136          461 GNH  463 (493)
Q Consensus       461 G~~  463 (493)
                      +..
T Consensus        81 p~~   83 (309)
T 1ur5_A           81 PRK   83 (309)
T ss_dssp             ---
T ss_pred             CCC
Confidence            433

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.60  E-value=0.016  Score=58.59  Aligned_cols=93  Identities=10%  Similarity=-0.011  Sum_probs=60.4

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.  + +.+  ....          .++++-. .+.++++.
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~--~~~~----------~~l~ell-~~aDvV~l  205 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EKK--GYYV----------DSLDDLY-KQADVISL  205 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HHT--TCBC----------SCHHHHH-HHCSEEEE
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hhh--Ceec----------CCHHHHH-hhCCEEEE
Confidence            46789999999999999999999999999999999988664  2 221  1100          1232222 45677888


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|+.-.-..+..  ...|..+-++.++++-
T Consensus       206 ~~p~~~~t~~li~--~~~l~~mk~ga~lIn~  234 (333)
T 1j4a_A          206 HVPDVPANVHMIN--DESIAKMKQDVVIVNV  234 (333)
T ss_dssp             CSCCCGGGTTCBS--HHHHHHSCTTEEEEEC
T ss_pred             cCCCcHHHHHHHh--HHHHhhCCCCcEEEEC
Confidence            8887643222221  1234444556777664

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=95.59  E-value=0.014  Score=55.97  Aligned_cols=47  Identities=28%  Similarity=0.341  Sum_probs=40.7

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH-HHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE-SLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~-a~~la~~~~  425 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++ .+++++.+.
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   50 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLA   50 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHH
Confidence            35789999987 789999999999999999999999888 777776654

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=95.59  E-value=0.0073  Score=61.47  Aligned_cols=76  Identities=16%  Similarity=0.155  Sum_probs=50.8

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      ..||+|||||.+|+.++..|++ ..+|++++|+.++++++.+.......+..  |    ..++.+.. .+.++++|++|=
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~--d----~~~l~~~~-~~~DvVi~~~p~   87 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDAS--N----FDKLVEVM-KEFELVIGALPG   87 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTT--C----HHHHHHHH-TTCSEEEECCCG
T ss_pred             ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecC--C----HHHHHHHH-hCCCEEEEecCC
Confidence            3479999999999999999875 35999999999998877543322111100  0    01222222 567899999985


Q ss_pred             CCch
Q 011136          461 GNHL  464 (493)
Q Consensus       461 G~~~  464 (493)
                      -.++
T Consensus        88 ~~~~   91 (365)
T 3abi_A           88 FLGF   91 (365)
T ss_dssp             GGHH
T ss_pred             cccc
Confidence            5443

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.59  E-value=0.022  Score=55.28  Aligned_cols=49  Identities=24%  Similarity=0.354  Sum_probs=42.3

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC-------------ChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-------------TYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R-------------~~~~a~~la~~~~~  426 (493)
                      .+++|.+||.|+ ||.|++++..|++.|++|++++|             +.++.+++++.+..
T Consensus        12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (280)
T 3pgx_A           12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVED   74 (280)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHT
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHh
Confidence            578999999987 78999999999999999999988             67888887776653

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.59  E-value=0.1  Score=52.41  Aligned_cols=75  Identities=13%  Similarity=-0.050  Sum_probs=51.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      +++.|+|+|.+|.++++.|+..|. +|++++++.++++..+..+...........+++.-.++ +.. .+.++++.++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al-~~aD~VI~av   90 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYL-QNSDVVIITA   90 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGG-TTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHH-CCCCEEEEcC
Confidence            589999999999999999999998 99999999999887665444332111112244443344 223 4556666665

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=95.59  E-value=0.03  Score=55.58  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=37.2

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeC--ChHHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANR--TYGESLTFLRL  423 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R--~~~~a~~la~~  423 (493)
                      ++.|||+|.+|.+++..|.+.|++|++++|  +.++.+.+.+.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~   44 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAG   44 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTT
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHh
Confidence            689999999999999999999999999999  98888877653

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.58  E-value=0.016  Score=60.08  Aligned_cols=43  Identities=28%  Similarity=0.183  Sum_probs=39.2

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTF  420 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~l  420 (493)
                      .+.+++|+|+|+|++|++++..+..+|++|++++|+.++.+.+
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          169 KVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            3568899999999999999999999999999999999887766

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=95.57  E-value=0.015  Score=56.11  Aligned_cols=49  Identities=22%  Similarity=0.295  Sum_probs=41.0

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R-~~~~a~~la~~~~~  426 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++| +.++.+++++.+..
T Consensus         8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   58 (276)
T 1mxh_A            8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNA   58 (276)
T ss_dssp             ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHH
Confidence            356889999987 78999999999999999999999 99988888877643

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.56  E-value=0.078  Score=53.07  Aligned_cols=47  Identities=26%  Similarity=0.124  Sum_probs=40.6

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC--hHHHHHHHHHhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT--YGESLTFLRLMSW  426 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~--~~~a~~la~~~~~  426 (493)
                      +.+++.|+|+|.+|.++++.|+..|. +|++++++  .++++..+.++..
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~   56 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLE   56 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHH
Confidence            35789999999999999999999999 99999999  7778777765543

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=95.54  E-value=0.014  Score=55.31  Aligned_cols=48  Identities=27%  Similarity=0.275  Sum_probs=41.8

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-YGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~-~~~a~~la~~~~  425 (493)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+ .++.+++.+.+.
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   53 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMR   53 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHH
Confidence            356899999987 889999999999999999999999 888888777654

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.54  E-value=0.1  Score=52.35  Aligned_cols=75  Identities=13%  Similarity=-0.086  Sum_probs=52.3

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      .++.|+|+|.+|.++++.|+..|. +|++++++.++++..+..+...........+++.-.+. +.. .+.++++.+.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al-~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDL-AGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGG-TTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHh-CCCCEEEEeC
Confidence            589999999999999999999998 99999999999887776665432111111234433344 222 5566677665

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=95.53  E-value=0.022  Score=55.57  Aligned_cols=49  Identities=24%  Similarity=0.259  Sum_probs=42.1

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R-~~~~a~~la~~~~~  426 (493)
                      .+.+|++||.|+ ||.|++++..|++.|++|++++| +.++.+++++.+..
T Consensus        22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~   72 (281)
T 3v2h_A           22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAG   72 (281)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHT
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhh
Confidence            467899999987 78999999999999999999999 67777887776643

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=95.52  E-value=0.012  Score=57.30  Aligned_cols=49  Identities=27%  Similarity=0.333  Sum_probs=41.3

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY-GESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~-~~a~~la~~~~  425 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|+++.|+. ++.+++++.+.
T Consensus        19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~   69 (288)
T 2x9g_A           19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELN   69 (288)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHH
Confidence            3467899999987 7899999999999999999999998 88888877664

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=95.52  E-value=0.016  Score=56.70  Aligned_cols=48  Identities=25%  Similarity=0.317  Sum_probs=41.4

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEe-CChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~-R~~~~a~~la~~~~  425 (493)
                      .+++|.+||.|+ ||.|++++..|++.|++|+++. |+.++.+++++.+.
T Consensus         6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~   55 (291)
T 1e7w_A            6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLN   55 (291)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHh
Confidence            356889999987 7899999999999999999999 99999888887764

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.52  E-value=0.011  Score=54.11  Aligned_cols=32  Identities=28%  Similarity=0.396  Sum_probs=29.7

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .|+|||||.+|.++|+.|++.|++|+|+.|..
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            49999999999999999999999999999753

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=95.52  E-value=0.05  Score=52.99  Aligned_cols=41  Identities=29%  Similarity=0.295  Sum_probs=36.4

Q ss_pred             CEEEEEecchHHHHHHHHHHhCC--CeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKG--ARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g--~~i~v~~R~~~~a~~la~  422 (493)
                      +++.|||+|.+|.+++..|.+.|  .+|++++|+.++.+.+.+
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~   49 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE   49 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH
Confidence            58999999999999999999874  599999999998887654

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.51  E-value=0.087  Score=53.14  Aligned_cols=86  Identities=9%  Similarity=-0.004  Sum_probs=58.7

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhh-hcccccceEEEEeecccccCCceEEEE
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLL-LNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~-~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      ...+++.|+|+|.+|.++++.|+..|.  +|++++++.++++..+.++.... +.  ....+..-.+.+ . -.+.+|++
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~--~~~~i~~~~d~~-~-~~~aDiVv   92 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFL--KTPKIVSSKDYS-V-TANSKLVI   92 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGC--SCCEEEECSSGG-G-GTTEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhcc--CCCeEEEcCCHH-H-hCCCCEEE
Confidence            346799999999999999999999886  89999999999999988877543 11  111222212222 2 26677777


Q ss_pred             ecccc----CCchhhHh
Q 011136          456 NIIHL----GNHLEWVT  468 (493)
Q Consensus       456 n~tpl----G~~~~~~~  468 (493)
                      .+-+.    ||....+.
T Consensus        93 i~aG~~~kpG~tR~dL~  109 (331)
T 4aj2_A           93 ITAGARQQEGESRLNLV  109 (331)
T ss_dssp             ECCSCCCCTTCCGGGGH
T ss_pred             EccCCCCCCCccHHHHH
Confidence            65332    55554444

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=95.50  E-value=0.017  Score=58.53  Aligned_cols=91  Identities=21%  Similarity=0.160  Sum_probs=55.2

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++..      ..           ....++++-. .+.++++.
T Consensus       167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~------~~-----------~~~~sl~ell-~~aDvVil  228 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGV------DW-----------IAHQSPVDLA-RDSDVLAV  228 (340)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTTS------CC-----------EECSSHHHHH-HTCSEEEE
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccccc------Cc-----------eecCCHHHHH-hcCCEEEE
Confidence            467899999999999999999999999999999999876521      10           1112333333 45677887


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|+.-.-..+..  ...+..+-++.+++|-
T Consensus       229 ~vP~t~~t~~li~--~~~l~~mk~gailIN~  257 (340)
T 4dgs_A          229 CVAASAATQNIVD--ASLLQALGPEGIVVNV  257 (340)
T ss_dssp             CC----------C--HHHHHHTTTTCEEEEC
T ss_pred             eCCCCHHHHHHhh--HHHHhcCCCCCEEEEC
Confidence            8887654444431  1233444456666654

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=95.50  E-value=0.018  Score=55.02  Aligned_cols=42  Identities=29%  Similarity=0.293  Sum_probs=36.5

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESL  418 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~  418 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.+..+
T Consensus        15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~   57 (249)
T 1o5i_A           15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK   57 (249)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            5678999999998 78999999999999999999999975443

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=95.49  E-value=0.014  Score=59.26  Aligned_cols=95  Identities=18%  Similarity=0.015  Sum_probs=62.9

Q ss_pred             ccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       376 ~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      +..+.|+++.|||.|.+|++++..|...|++|..++|+..+.+...   +...           ..++++-. .+.++++
T Consensus       168 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---g~~~-----------~~~l~ell-~~sDvV~  232 (345)
T 4g2n_A          168 GMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE---GAIY-----------HDTLDSLL-GASDIFL  232 (345)
T ss_dssp             BCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT---TCEE-----------CSSHHHHH-HTCSEEE
T ss_pred             ccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc---CCeE-----------eCCHHHHH-hhCCEEE
Confidence            3568899999999999999999999999999999999864433211   1111           12343333 4567888


Q ss_pred             eccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          456 NIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       456 n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ..+|+.-.-..+..  ...|..+-++.+++|-
T Consensus       233 l~~Plt~~T~~li~--~~~l~~mk~gailIN~  262 (345)
T 4g2n_A          233 IAAPGRPELKGFLD--HDRIAKIPEGAVVINI  262 (345)
T ss_dssp             ECSCCCGGGTTCBC--HHHHHHSCTTEEEEEC
T ss_pred             EecCCCHHHHHHhC--HHHHhhCCCCcEEEEC
Confidence            88887654333321  2334444556777664

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=95.48  E-value=0.11  Score=51.84  Aligned_cols=81  Identities=14%  Similarity=0.040  Sum_probs=57.4

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      .+++.|+|+|.+|.++++.|+..|.  +|++++++.++++..+..+.... . .....+++..+..+.. .+.++++.++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~-~-~~~~~~~i~~~~~~al-~~aDvViia~   82 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGK-V-FAPKPVDIWHGDYDDC-RDADLVVICA   82 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHT-T-SSSSCCEEEECCGGGT-TTCSEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHh-h-hcCCCeEEEcCcHHHh-CCCCEEEEcC
Confidence            3689999999999999999988774  89999999988887766655432 1 1111333333333344 6778888888


Q ss_pred             ccCCch
Q 011136          459 HLGNHL  464 (493)
Q Consensus       459 plG~~~  464 (493)
                      |.+..|
T Consensus        83 ~~~~~~   88 (316)
T 1ldn_A           83 GANQKP   88 (316)
T ss_dssp             SCCCCT
T ss_pred             CCCCCC
Confidence            877655

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.47  E-value=0.097  Score=55.08  Aligned_cols=43  Identities=19%  Similarity=0.181  Sum_probs=38.6

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      -++|.|||+|-||.+++..|+..|++|++++|+.++++...+.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~   79 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKI   79 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence            4689999999999999999999999999999999888776553

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=95.46  E-value=0.017  Score=59.74  Aligned_cols=96  Identities=9%  Similarity=-0.052  Sum_probs=60.9

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+..+.+ .+..++....           .++++-. .+.++++.
T Consensus       187 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-~~~~~G~~~~-----------~~l~ell-~~aDvV~l  253 (393)
T 2nac_A          187 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES-VEKELNLTWH-----------ATREDMY-PVCDVVTL  253 (393)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH-HHHHHTCEEC-----------SSHHHHG-GGCSEEEE
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchh-hHhhcCceec-----------CCHHHHH-hcCCEEEE
Confidence            467899999999999999999999999999999999865543 2233322110           1232222 45677887


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|+.-.-..+..  ...|..+-++.++++-
T Consensus       254 ~~Plt~~t~~li~--~~~l~~mk~gailIN~  282 (393)
T 2nac_A          254 NCPLHPETEHMIN--DETLKLFKRGAYIVNT  282 (393)
T ss_dssp             CSCCCTTTTTCBS--HHHHTTSCTTEEEEEC
T ss_pred             ecCCchHHHHHhh--HHHHhhCCCCCEEEEC
Confidence            8887643333321  1234444456666653

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=95.45  E-value=0.0068  Score=60.14  Aligned_cols=90  Identities=19%  Similarity=0.173  Sum_probs=59.7

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                      .+.|+++.|||.|.+|++++..|...|++|+.++|+.++.+.    .             ....++++-. .+.++++.+
T Consensus       119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~----~-------------~~~~~l~ell-~~aDiV~l~  180 (290)
T 3gvx_A          119 LLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV----D-------------VISESPADLF-RQSDFVLIA  180 (290)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC----S-------------EECSSHHHHH-HHCSEEEEC
T ss_pred             eeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc----c-------------cccCChHHHh-hccCeEEEE
Confidence            477999999999999999999999999999999998755322    0             0112333333 456777777


Q ss_pred             cccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          458 IHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       458 tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      +|+.-.-..+..  ...|..+-++.+++|-
T Consensus       181 ~P~t~~t~~li~--~~~l~~mk~gailIN~  208 (290)
T 3gvx_A          181 IPLTDKTRGMVN--SRLLANARKNLTIVNV  208 (290)
T ss_dssp             CCCCTTTTTCBS--HHHHTTCCTTCEEEEC
T ss_pred             eeccccchhhhh--HHHHhhhhcCceEEEe
Confidence            877554333321  1234444456676664

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=95.44  E-value=0.021  Score=55.63  Aligned_cols=49  Identities=20%  Similarity=0.207  Sum_probs=42.8

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|+++.|+.++.+++.+.+.
T Consensus        40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~   89 (285)
T 2c07_A           40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK   89 (285)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHH
Confidence            3467899999987 789999999999999999999999998888877664

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=95.44  E-value=0.025  Score=57.13  Aligned_cols=90  Identities=17%  Similarity=0.058  Sum_probs=62.3

Q ss_pred             CEEEEEecchHHH-HHHHHHHhC-CCeE-EEEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccccc-CCceEEEEec
Q 011136          382 KLFVVIGAGGAGK-ALAYGAKAK-GARV-VIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTW-HLKFFIAANI  457 (493)
Q Consensus       382 ~~vlvlGaGGaar-a~~~~L~~~-g~~i-~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~i~~n~  457 (493)
                      .++.|||+|.+|+ ..+.+|... +++| .|++|+.++++++++.++....           .+.++-. .++.++++-+
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~-----------~~~~~ll~~~~~D~V~i~   96 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPV-----------EGYPALLERDDVDAVYVP   96 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEE-----------ESHHHHHTCTTCSEEEEC
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCc-----------CCHHHHhcCCCCCEEEEC
Confidence            4799999999998 788888887 5665 5999999999999988764321           2322221 1356778878


Q ss_pred             cccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          458 IHLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       458 tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      ||-..|.+....     ... ..-.|++||.
T Consensus        97 tp~~~h~~~~~~-----al~-aGk~Vl~EKP  121 (350)
T 3rc1_A           97 LPAVLHAEWIDR-----ALR-AGKHVLAEKP  121 (350)
T ss_dssp             CCGGGHHHHHHH-----HHH-TTCEEEEESS
T ss_pred             CCcHHHHHHHHH-----HHH-CCCcEEEeCC
Confidence            888888776642     222 3334777774

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=95.44  E-value=0.71  Score=42.93  Aligned_cols=117  Identities=15%  Similarity=0.168  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCC-CCCCCCHHHHHHHHHHHHHhCC
Q 011136           34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEG-GQYDGDENERVDVLRLAMELGA  112 (493)
Q Consensus        34 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eG-G~~~~~~~~~~~ll~~~l~~~~  112 (493)
                      +.+...+.++.+.+.|++.+++  |      ..+.++.+++.+++|++-.+|..-.| +..-....++   ++.+++.|+
T Consensus        21 ~~~~~~~~a~~~~~~Ga~~i~~--~------~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~---i~~~~~~Ga   89 (223)
T 1y0e_A           21 SSFIMSKMALAAYEGGAVGIRA--N------TKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKE---VDELIESQC   89 (223)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEE--E------SHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHH---HHHHHHHTC
T ss_pred             CCccHHHHHHHHHHCCCeeecc--C------CHHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHH---HHHHHhCCC
Confidence            5556666666666789999976  3      13568888888899997655543323 3322222223   445677899


Q ss_pred             cEEEEEccc---c----cchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          113 DYIDVELQV---A----REFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       113 dyIDIEl~~---~----~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      |+|-+....   +    .++++.+... -++..++.+.|+      .++    ..++.+.|+|++.+
T Consensus        90 d~v~l~~~~~~~p~~~~~~~i~~~~~~-~~~~~v~~~~~t------~~e----~~~~~~~G~d~i~~  145 (223)
T 1y0e_A           90 EVIALDATLQQRPKETLDELVSYIRTH-APNVEIMADIAT------VEE----AKNAARLGFDYIGT  145 (223)
T ss_dssp             SEEEEECSCSCCSSSCHHHHHHHHHHH-CTTSEEEEECSS------HHH----HHHHHHTTCSEEEC
T ss_pred             CEEEEeeecccCcccCHHHHHHHHHHh-CCCceEEecCCC------HHH----HHHHHHcCCCEEEe
Confidence            998876543   1    1334444432 236777777662      223    34577889999865

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=95.44  E-value=0.029  Score=54.25  Aligned_cols=50  Identities=28%  Similarity=0.379  Sum_probs=41.8

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC------------hHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT------------YGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~------------~~~a~~la~~~~~  426 (493)
                      .++++|++||.|+ ||.|++++..|++.|++|++++|+            .++.+++++.+..
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVED   71 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHh
Confidence            4578999999987 789999999999999999999987            6777766665543

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.44  E-value=0.028  Score=56.38  Aligned_cols=90  Identities=16%  Similarity=0.032  Sum_probs=62.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccC-CceEEEEecc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAK-GARVV-IANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWH-LKFFIAANII  458 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~-g~~i~-v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~i~~n~t  458 (493)
                      .++.|||+|.+|+..+.+|.+. +++|+ |++|+.++++++++.++..           +..+.++-.. ++.++++-+|
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~-----------~~~~~~~~l~~~~~D~V~i~t   73 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAE-----------AVASPDEVFARDDIDGIVIGS   73 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCE-----------EESSHHHHTTCSCCCEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCc-----------eeCCHHHHhcCCCCCEEEEeC
Confidence            4799999999999999999887 45654 9999999999998876521           1123322221 3567888888


Q ss_pred             ccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          459 HLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       459 plG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      |-..|.+.....     . ...-.|++||.
T Consensus        74 p~~~h~~~~~~a-----l-~~gk~v~~EKP   97 (344)
T 3euw_A           74 PTSTHVDLITRA-----V-ERGIPALCEKP   97 (344)
T ss_dssp             CGGGHHHHHHHH-----H-HTTCCEEECSC
T ss_pred             CchhhHHHHHHH-----H-HcCCcEEEECC
Confidence            888887666422     1 13344777774

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=95.43  E-value=0.026  Score=56.08  Aligned_cols=41  Identities=22%  Similarity=0.175  Sum_probs=35.0

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC--hHHHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT--YGESLTFL  421 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~--~~~a~~la  421 (493)
                      ..++.|||+|-+|.+++..|.+.|+ +|++++|+  .++.+.+.
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~   67 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAE   67 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHH
Confidence            4689999999999999999999999 99999997  46655544

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=95.43  E-value=0.03  Score=55.89  Aligned_cols=41  Identities=24%  Similarity=0.263  Sum_probs=36.3

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCC----CeEEEEeCChH--HHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKG----ARVVIANRTYG--ESLTFL  421 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g----~~i~v~~R~~~--~a~~la  421 (493)
                      ..++.|||+|.||.+++..|.+.|    .+|++++|+.+  +++.+.
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~   68 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR   68 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH
Confidence            347999999999999999999999    68999999986  777775

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.43  E-value=0.086  Score=52.24  Aligned_cols=46  Identities=11%  Similarity=0.094  Sum_probs=39.0

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      ++.|+|+|.+|.++++.|+..|.  +|+++++++++++..+.++....
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~   49 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAA   49 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhh
Confidence            68999999999999999999886  89999999999886665554433

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=95.42  E-value=0.013  Score=59.91  Aligned_cols=96  Identities=9%  Similarity=-0.059  Sum_probs=60.9

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~-i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      ..+.|+++.|||.|.+|++++..|...|++ |++++|+..+.+. +..++...           ..++++-. .+.++++
T Consensus       160 ~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~-~~~~g~~~-----------~~~l~ell-~~aDvV~  226 (364)
T 2j6i_A          160 YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDA-EEKVGARR-----------VENIEELV-AQADIVT  226 (364)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHH-HHHTTEEE-----------CSSHHHHH-HTCSEEE
T ss_pred             ccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhH-HHhcCcEe-----------cCCHHHHH-hcCCEEE
Confidence            468899999999999999999999999996 9999998755443 23332111           12333322 4567888


Q ss_pred             eccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          456 NIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       456 n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      .++|+.-.-..+..  ...|..+-++.++++-
T Consensus       227 l~~P~t~~t~~li~--~~~l~~mk~ga~lIn~  256 (364)
T 2j6i_A          227 VNAPLHAGTKGLIN--KELLSKFKKGAWLVNT  256 (364)
T ss_dssp             ECCCCSTTTTTCBC--HHHHTTSCTTEEEEEC
T ss_pred             ECCCCChHHHHHhC--HHHHhhCCCCCEEEEC
Confidence            88887533222221  1223444456666553

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.42  E-value=0.027  Score=49.60  Aligned_cols=44  Identities=11%  Similarity=0.133  Sum_probs=37.9

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT-YGESLTFLRLM  424 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~-~~~a~~la~~~  424 (493)
                      .++++|+|+|..|+.++..|.+.|++|++++|+ .++.+.+.+.+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~   47 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL   47 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh
Confidence            457999999999999999999999999999997 57777776543

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=95.42  E-value=0.33  Score=46.26  Aligned_cols=117  Identities=15%  Similarity=0.063  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCC-CCCCHHHHHHHHHHHHHhCCc
Q 011136           35 VDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQ-YDGDENERVDVLRLAMELGAD  113 (493)
Q Consensus        35 ~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~-~~~~~~~~~~ll~~~l~~~~d  113 (493)
                      ..++..-++.+.+.|+.+++.  .      ..+.++.+++..++|+|--+|. .-||. +-.++  +++-.+.+...|+|
T Consensus        35 ~~~~~~~A~a~~~~Ga~~i~~--~------~~~~i~~ir~~v~~Pvig~~k~-d~~~~~~~I~~--~~~~i~~~~~~Gad  103 (232)
T 3igs_A           35 PEIVAAMALAAEQAGAVAVRI--E------GIDNLRMTRSLVSVPIIGIIKR-DLDESPVRITP--FLDDVDALAQAGAA  103 (232)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEE--E------SHHHHHHHHTTCCSCEEEECBC-CCSSCCCCBSC--SHHHHHHHHHHTCS
T ss_pred             cchHHHHHHHHHHCCCeEEEE--C------CHHHHHHHHHhcCCCEEEEEee-cCCCcceEeCc--cHHHHHHHHHcCCC
Confidence            566677777777889999876  1      2357888888889999755554 22441 21221  22334556788999


Q ss_pred             EEEEEccc--ccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          114 YIDVELQV--AREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       114 yIDIEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      +|-+....  .++.++++. ..++.+..++++.|+          .+..+++.+.|+|++-+
T Consensus       104 ~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t----------~eea~~a~~~Gad~Ig~  155 (232)
T 3igs_A          104 IIAVDGTARQRPVAVEALLARIHHHHLLTMADCSS----------VDDGLACQRLGADIIGT  155 (232)
T ss_dssp             EEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCS----------HHHHHHHHHTTCSEEEC
T ss_pred             EEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCC----------HHHHHHHHhCCCCEEEE
Confidence            99887653  223333333 233457889998883          23456777899999853

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.41  E-value=0.1  Score=52.21  Aligned_cols=79  Identities=10%  Similarity=0.002  Sum_probs=55.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      .++.|+|+|.+|.++++.|+..+.  +|.+++++.++++..+.++.... ...  ..+++.....+.. .+.++++.+.+
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~-~~~--~~~~v~~~~~~a~-~~aDvVii~ag   81 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ-AFT--APKKIYSGEYSDC-KDADLVVITAG   81 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG-GGS--CCCEEEECCGGGG-TTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH-Hhc--CCeEEEECCHHHh-CCCCEEEECCC
Confidence            589999999999999999988775  89999999999998888776543 111  2333333333444 56778887776


Q ss_pred             cCCch
Q 011136          460 LGNHL  464 (493)
Q Consensus       460 lG~~~  464 (493)
                      ..-.|
T Consensus        82 ~~~~~   86 (318)
T 1ez4_A           82 APQKP   86 (318)
T ss_dssp             C----
T ss_pred             CCCCC
Confidence            65444

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.41  E-value=0.049  Score=54.87  Aligned_cols=49  Identities=16%  Similarity=0.202  Sum_probs=43.3

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      .++++.|+|+|.+|.++++.|+..|.  +|++++++.++++..+.++....
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~   58 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL   58 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh
Confidence            46799999999999999999999886  89999999999998888777543

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=95.41  E-value=0.029  Score=55.77  Aligned_cols=75  Identities=11%  Similarity=-0.090  Sum_probs=52.6

Q ss_pred             EEEEEecchHHH-HHHHHHHhC-CCeEEEEeCChHHHHHHHHHhhhhh-hcccccceEEEEeecccccCCceEEEEeccc
Q 011136          383 LFVVIGAGGAGK-ALAYGAKAK-GARVVIANRTYGESLTFLRLMSWLL-LNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       383 ~vlvlGaGGaar-a~~~~L~~~-g~~i~v~~R~~~~a~~la~~~~~~~-~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      ++.|||+|.+|+ +.+.+|... +++|+|++|+.++++++++.++... ..           +..+...++.++++-+||
T Consensus         4 ~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~-----------~~~~~l~~~~D~V~i~tp   72 (323)
T 1xea_A            4 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCT-----------DYRDVLQYGVDAVMIHAA   72 (323)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCS-----------STTGGGGGCCSEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCcccc-----------CHHHHhhcCCCEEEEECC
Confidence            689999999998 588888775 5677799999999999998876421 10           001111145677887888


Q ss_pred             cCCchhhHh
Q 011136          460 LGNHLEWVT  468 (493)
Q Consensus       460 lG~~~~~~~  468 (493)
                      -..+.+.+.
T Consensus        73 ~~~h~~~~~   81 (323)
T 1xea_A           73 TDVHSTLAA   81 (323)
T ss_dssp             GGGHHHHHH
T ss_pred             chhHHHHHH
Confidence            776666554

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=95.39  E-value=0.023  Score=56.13  Aligned_cols=89  Identities=10%  Similarity=-0.085  Sum_probs=61.3

Q ss_pred             CEEEEEecchHHHH-HHHHHHhC-CCeEE-EEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          382 KLFVVIGAGGAGKA-LAYGAKAK-GARVV-IANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       382 ~~vlvlGaGGaara-~~~~L~~~-g~~i~-v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      .++.|||+|.+|+. .+.+|.+. +++++ |++|+.++++++++.++....           .+.++-. .+.++++-+|
T Consensus         7 ~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~-----------~~~~~ll-~~~D~V~i~t   74 (308)
T 3uuw_A            7 IKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPF-----------DSIESLA-KKCDCIFLHS   74 (308)
T ss_dssp             CEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBC-----------SCHHHHH-TTCSEEEECC
T ss_pred             CcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCc-----------CCHHHHH-hcCCEEEEeC
Confidence            58999999999996 77878774 56655 999999999999988764321           2222222 2567777788


Q ss_pred             ccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          459 HLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       459 plG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      |-..|.+.+..     ... ..-.|++||-
T Consensus        75 p~~~h~~~~~~-----al~-~gk~vl~EKP   98 (308)
T 3uuw_A           75 STETHYEIIKI-----LLN-LGVHVYVDKP   98 (308)
T ss_dssp             CGGGHHHHHHH-----HHH-TTCEEEECSS
T ss_pred             CcHhHHHHHHH-----HHH-CCCcEEEcCC
Confidence            88888776642     222 3334777763

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=95.39  E-value=0.021  Score=55.22  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=39.1

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +|+|||-|+ +|.|++++..|++.|++|++++|+.++.++++++.
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~   46 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKER   46 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc
Confidence            478999886 78999999999999999999999999988887654

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=95.37  E-value=0.022  Score=53.40  Aligned_cols=45  Identities=27%  Similarity=0.257  Sum_probs=39.6

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   50 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELE   50 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh
Confidence            678999987 789999999999999999999999988888876553

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.36  E-value=0.077  Score=55.54  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .+++|+++|||.|++|.+++..|.+.|++|+++++..
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            4678999999999999999999999999999999865

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=95.36  E-value=0.022  Score=54.26  Aligned_cols=47  Identities=17%  Similarity=0.174  Sum_probs=41.2

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHhhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKA-KGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~-~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ++|++||.|+ ||.|++++..|++ .|++|+++.|+.++.+++.+.+..
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~   51 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA   51 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHh
Confidence            4689999987 8899999999999 999999999999988888776643

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.35  E-value=0.029  Score=54.28  Aligned_cols=48  Identities=17%  Similarity=0.218  Sum_probs=40.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC------------hHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT------------YGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~------------~~~a~~la~~~~  425 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+            .++.+++.+.+.
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVE   67 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHH
Confidence            478999999997 789999999999999999999987            666666666554

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=95.34  E-value=0.021  Score=54.88  Aligned_cols=47  Identities=28%  Similarity=0.317  Sum_probs=41.1

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHhhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYGESLTFLRLMSW  426 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~-~R~~~~a~~la~~~~~  426 (493)
                      ++|++||.|+ ||.|++++..|++.|++|++. +|+.++.+++++.+..
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~   51 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEK   51 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence            3788999987 789999999999999988885 9999999998887654

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=95.34  E-value=0.023  Score=60.37  Aligned_cols=41  Identities=32%  Similarity=0.352  Sum_probs=38.1

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+..++
T Consensus       273 ~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~  313 (494)
T 3d64_A          273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICA  313 (494)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHH
T ss_pred             cccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhH
Confidence            45789999999999999999999999999999999998875

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=95.33  E-value=0.022  Score=54.44  Aligned_cols=49  Identities=27%  Similarity=0.399  Sum_probs=42.0

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R-~~~~a~~la~~~~  425 (493)
                      ..+++|++||.|+ ||.|++++..|.+.|++|+++.| +.++.+++.+.+.
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~   67 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELK   67 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHH
Confidence            3467899999987 78999999999999999999999 8888877776654

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=95.32  E-value=0.023  Score=54.88  Aligned_cols=50  Identities=22%  Similarity=0.252  Sum_probs=41.6

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R-~~~~a~~la~~~~~  426 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|+++.| +.+..+.+.+.+..
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   76 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEE   76 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence            4578999999987 78999999999999999999999 56666666665543

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=95.31  E-value=0.028  Score=53.98  Aligned_cols=49  Identities=27%  Similarity=0.302  Sum_probs=41.4

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~-~R~~~~a~~la~~~~~  426 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|+++ .|+.++.+++.+.+..
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~   55 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEK   55 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence            467899999987 789999999999999988887 7788888777776643

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=95.30  E-value=0.12  Score=51.46  Aligned_cols=78  Identities=9%  Similarity=-0.059  Sum_probs=53.9

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      ++.|||+|.+|.+++..|+..|.  +|++++|+.++++.++..+..... -....++.. .+. +.. .+.++++-++|-
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~-~~~~~~i~~-~d~-~~~-~~aDvViiav~~   77 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FTRRANIYA-GDY-ADL-KGSDVVIVAAGV   77 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GSCCCEEEE-CCG-GGG-TTCSEEEECCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh-hcCCcEEEe-CCH-HHh-CCCCEEEEccCC
Confidence            68999999999999999999997  999999999999887765543211 011112332 222 222 567788888887


Q ss_pred             CCch
Q 011136          461 GNHL  464 (493)
Q Consensus       461 G~~~  464 (493)
                      +-.|
T Consensus        78 ~~~~   81 (319)
T 1a5z_A           78 PQKP   81 (319)
T ss_dssp             CCCS
T ss_pred             CCCC
Confidence            5543

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=95.30  E-value=0.076  Score=49.12  Aligned_cols=131  Identities=17%  Similarity=0.118  Sum_probs=83.5

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDV  103 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (493)
                      ++++.+-..++++.+..++.+.. ++|++|+-..++...- .+.++.+++.. +.|+++++-..      +. .+.   .
T Consensus         2 ~li~a~d~~~~~~~~~~~~~~~~-~v~~iev~~~~~~~~g-~~~i~~l~~~~~~~~i~~~l~~~------di-~~~---~   69 (207)
T 3ajx_A            2 KLQVAIDLLSTEAALELAGKVAE-YVDIIELGTPLIKAEG-LSVITAVKKAHPDKIVFADMKTM------DA-GEL---E   69 (207)
T ss_dssp             EEEEEECCSCHHHHHHHHHHHGG-GCSEEEECHHHHHHHC-THHHHHHHHHSTTSEEEEEEEEC------SC-HHH---H
T ss_pred             eEEEEeCCCCHHHHHHHHHHhhc-cCCEEEECcHHHHhhC-HHHHHHHHHhCCCCeEEEEEEec------Cc-cHH---H
Confidence            57888999999999999988755 8999999766431111 24577777766 78999887642      11 232   3


Q ss_pred             HHHHHHhCCcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 011136          104 LRLAMELGADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (493)
Q Consensus       104 l~~~l~~~~dyIDIEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia  173 (493)
                      .+.+.+.|+|+|.+-....++.++.+.. .++.+.++-+|.|.. .+|  .+   ..+.+.+.|+|+||+.
T Consensus        70 ~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~s~-~~p--~~---~~~~~~~~g~d~v~~~  134 (207)
T 3ajx_A           70 ADIAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGI-EDK--AT---RAQEVRALGAKFVEMH  134 (207)
T ss_dssp             HHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTC-SSH--HH---HHHHHHHTTCSEEEEE
T ss_pred             HHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCceEEEEecC-CCh--HH---HHHHHHHhCCCEEEEE
Confidence            4677889999998866554333333332 222355666777621 122  23   2334445689999875

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.30  E-value=0.021  Score=53.41  Aligned_cols=43  Identities=21%  Similarity=0.230  Sum_probs=39.4

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +++|+|+|.+|+.++..|.+.|++|++++|++++++.+++..+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~   44 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLK   44 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcC
Confidence            5899999999999999999999999999999999999887543

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=95.30  E-value=0.032  Score=54.02  Aligned_cols=49  Identities=27%  Similarity=0.405  Sum_probs=41.6

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC-------------ChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-------------TYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R-------------~~~~a~~la~~~~~  426 (493)
                      .+++|.+||.|+ ||.|++++..|++.|++|++++|             +.++.+++++.+..
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEA   70 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHh
Confidence            577999999997 78999999999999999999988             67777777665543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=95.29  E-value=0.031  Score=54.16  Aligned_cols=48  Identities=23%  Similarity=0.399  Sum_probs=39.8

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC------------hHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT------------YGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~------------~~~a~~la~~~~  425 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+            .++.+++.+.+.
T Consensus         7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~   67 (281)
T 3s55_A            7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVE   67 (281)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHH
Confidence            477999999986 789999999999999999999997            555665555443

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=95.28  E-value=0.023  Score=54.98  Aligned_cols=50  Identities=26%  Similarity=0.401  Sum_probs=42.1

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R-~~~~a~~la~~~~~  426 (493)
                      .++++|.+||.|+ ||.|++++..|++.|++|++..| +.++.+++++.+..
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~   75 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAA   75 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHh
Confidence            3567899999987 78999999999999999988887 77778877776654

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=95.27  E-value=0.019  Score=53.93  Aligned_cols=43  Identities=28%  Similarity=0.357  Sum_probs=38.3

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      |++||.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   45 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL   45 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            46899987 78999999999999999999999999998888765

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.26  E-value=0.029  Score=55.15  Aligned_cols=46  Identities=22%  Similarity=0.157  Sum_probs=39.1

Q ss_pred             cccCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          377 SALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       377 ~~l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ..+++|++||.|++   |.|++++..|++.|++|++++|+.+..+.+.+
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~   74 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDP   74 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence            34779999999985   99999999999999999999999765555544

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=95.25  E-value=0.023  Score=57.25  Aligned_cols=90  Identities=12%  Similarity=-0.048  Sum_probs=62.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhC--CCe-EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccC-CceEEEEec
Q 011136          382 KLFVVIGAGGAGKALAYGAKAK--GAR-VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWH-LKFFIAANI  457 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~--g~~-i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~i~~n~  457 (493)
                      .++.|||+|.+|+..+.+|.+.  +++ +.|++|+.++++++++.++..           +..+.++-.. ++.++++-+
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~-----------~~~~~~~ll~~~~~D~V~i~   82 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGAR-----------GHASLTDMLAQTDADIVILT   82 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCE-----------EESCHHHHHHHCCCSEEEEC
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCc-----------eeCCHHHHhcCCCCCEEEEC
Confidence            4899999999999999999887  566 559999999999999877632           1223322221 356788888


Q ss_pred             cccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          458 IHLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       458 tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      ||-..|.+.....     .. ..-.|+.||.
T Consensus        83 tp~~~h~~~~~~a-----l~-~gk~v~~EKP  107 (354)
T 3q2i_A           83 TPSGLHPTQSIEC-----SE-AGFHVMTEKP  107 (354)
T ss_dssp             SCGGGHHHHHHHH-----HH-TTCEEEECSS
T ss_pred             CCcHHHHHHHHHH-----HH-CCCCEEEeCC
Confidence            8888877665422     11 3345666664

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.24  E-value=0.048  Score=54.69  Aligned_cols=69  Identities=20%  Similarity=0.061  Sum_probs=50.0

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      .|.+|||+|+|++|.+++..++..|++|+++.++.++.+. ++.++...          ++ +-.+.+..++++++|+++
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~-~~~lGa~~----------v~-~~~~~~~~~~D~vid~~g  243 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQD-ALSMGVKH----------FY-TDPKQCKEELDFIISTIP  243 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHH-HHHTTCSE----------EE-SSGGGCCSCEEEEEECCC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHH-HHhcCCCe----------ec-CCHHHHhcCCCEEEECCC
Confidence            4789999999999999999999999999999999888764 44454221          11 112333346788887766


Q ss_pred             c
Q 011136          460 L  460 (493)
Q Consensus       460 l  460 (493)
                      -
T Consensus       244 ~  244 (348)
T 3two_A          244 T  244 (348)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.24  E-value=0.031  Score=54.25  Aligned_cols=50  Identities=26%  Similarity=0.315  Sum_probs=41.3

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEe-CChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~-R~~~~a~~la~~~~~  426 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|+++. |+.++.+++++.+..
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~   78 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQ   78 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence            3578999999997 7899999999999999988874 556778887776653

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.22  E-value=0.021  Score=54.40  Aligned_cols=48  Identities=23%  Similarity=0.382  Sum_probs=39.7

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.++..+.+
T Consensus        10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l   58 (265)
T 1h5q_A           10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKV   58 (265)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHH
Confidence            3467899999987 78999999999999999999999776665554444

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.22  E-value=0.13  Score=51.63  Aligned_cols=80  Identities=11%  Similarity=0.017  Sum_probs=55.4

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      ..++.|+|+|.+|.++++.|+..+.  +|.+++++.++++..+.++.... ...  ..+++..+..+.. .+.++++.+.
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~-~~~--~~~~i~~~~~~a~-~~aDvVii~a   84 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNAL-PFT--SPKKIYSAEYSDA-KDADLVVITA   84 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG-GGS--CCCEEEECCGGGG-GGCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHH-Hhc--CCeEEEECCHHHh-CCCCEEEEcC
Confidence            4689999999999999999988775  89999999999998887776543 111  2333333333444 5677777777


Q ss_pred             ccCCch
Q 011136          459 HLGNHL  464 (493)
Q Consensus       459 plG~~~  464 (493)
                      +..-.|
T Consensus        85 g~~~k~   90 (326)
T 2zqz_A           85 GAPQKP   90 (326)
T ss_dssp             CCC---
T ss_pred             CCCCCC
Confidence            654443

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=95.22  E-value=0.034  Score=54.13  Aligned_cols=49  Identities=20%  Similarity=0.206  Sum_probs=42.0

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R-~~~~a~~la~~~~~  426 (493)
                      .+++|.+||.|+ ||.|++++..|++.|++|++++| +.++.+++++.+..
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~   76 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSG   76 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHh
Confidence            467899999987 78999999999999999999885 88888888777654

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=95.22  E-value=0.036  Score=54.48  Aligned_cols=50  Identities=20%  Similarity=0.311  Sum_probs=41.8

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC------------hHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT------------YGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~------------~~~a~~la~~~~~  426 (493)
                      ..+++|.+||.|+ ||.|++++..|++.|++|++++|+            .++.+++++.+..
T Consensus        24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (299)
T 3t7c_A           24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEA   86 (299)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHh
Confidence            3578999999997 789999999999999999999887            6777777665543

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=95.22  E-value=0.023  Score=56.86  Aligned_cols=47  Identities=23%  Similarity=0.306  Sum_probs=41.5

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEe-CChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~-R~~~~a~~la~~~~  425 (493)
                      +++|.+||.|+ ||.|++++..|++.|++|+++. |+.++.+++++.+.
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~   92 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLN   92 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            67899999987 7899999999999999999999 99999988887664

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=95.21  E-value=0.02  Score=56.25  Aligned_cols=49  Identities=24%  Similarity=0.329  Sum_probs=43.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCC---eEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGA---RVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~---~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++|++||.|+ ||.|++++..|++.|+   +|++++|+.++.+++++.+..
T Consensus        30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~   82 (287)
T 3rku_A           30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQ   82 (287)
T ss_dssp             HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHh
Confidence            467899999987 7899999999999886   999999999999999887754

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=95.21  E-value=0.063  Score=56.10  Aligned_cols=107  Identities=13%  Similarity=0.042  Sum_probs=66.5

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcc--------cccceEEEEeecccccCCce
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNT--------LLFDSVIVIRILLFTWHLKF  451 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~--------~~~~~~~v~~~l~~~~~~~~  451 (493)
                      .|.+..|||.|-+|...+..|++.|++|++++|++++.+.|.+.-.....+.        ....+++.-.+.+   ..+.
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~---~aDv   86 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPE---ASDV   86 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCC---CCSE
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchh---hCCE
Confidence            4778999999999999999999999999999999999999976211100000        0011233322222   2566


Q ss_pred             EEEEeccccCC----c--hhhHhhhhhHHHHhhccceEeeeccc
Q 011136          452 FIAANIIHLGN----H--LEWVTAAFNLFFYLTCNSYVVMEKTE  489 (493)
Q Consensus       452 ~i~~n~tplG~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (493)
                      .|++=.||...    .  ...+.+....-...+-++.+|.+++-
T Consensus        87 vii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~ST  130 (431)
T 3ojo_A           87 FIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVEST  130 (431)
T ss_dssp             EEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSC
T ss_pred             EEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecC
Confidence            66665666521    1  22455544444444557788888754

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=95.19  E-value=0.014  Score=55.40  Aligned_cols=43  Identities=26%  Similarity=0.397  Sum_probs=38.2

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++.++++
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   47 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE   47 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            56899999998 78999999999999999999999988776654

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=95.17  E-value=0.023  Score=55.20  Aligned_cols=44  Identities=23%  Similarity=0.300  Sum_probs=38.2

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTF  420 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~l  420 (493)
                      .+|+||.++|-|+ +|.|++++..|++.|++|++++|+.++.+.+
T Consensus         3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~   47 (258)
T 4gkb_A            3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFL   47 (258)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHH
Confidence            4588999999988 7899999999999999999999987765443

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=95.17  E-value=0.016  Score=57.78  Aligned_cols=89  Identities=20%  Similarity=0.170  Sum_probs=59.3

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                      .+.|+++.|||.|.+|++++..|...|++|++++|+.+ ..      ....           ..++++-. .+.++++.+
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~------~~~~-----------~~~l~ell-~~aDvV~l~  181 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG------PWRF-----------TNSLEEAL-REARAAVCA  181 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS------SSCC-----------BSCSHHHH-TTCSEEEEC
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-cc------Cccc-----------CCCHHHHH-hhCCEEEEe
Confidence            57899999999999999999999999999999999875 11      1100           02232222 456778888


Q ss_pred             cccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          458 IHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       458 tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      +|+.-.-..+..  ...|..+-++.+++|-
T Consensus       182 ~P~~~~t~~~i~--~~~l~~mk~gailin~  209 (303)
T 1qp8_A          182 LPLNKHTRGLVK--YQHLALMAEDAVFVNV  209 (303)
T ss_dssp             CCCSTTTTTCBC--HHHHTTSCTTCEEEEC
T ss_pred             CcCchHHHHHhC--HHHHhhCCCCCEEEEC
Confidence            887754333321  1334444456777664

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=95.16  E-value=0.025  Score=54.14  Aligned_cols=45  Identities=22%  Similarity=0.402  Sum_probs=39.2

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH--HHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE--SLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~--a~~la~~~~  425 (493)
                      +|+++|.|+ ||.|++++..|++.|++|+++.|+.++  .+++++.+.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~   49 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIE   49 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHH
Confidence            578999987 789999999999999999999999887  777776654

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.15  E-value=0.039  Score=57.53  Aligned_cols=40  Identities=18%  Similarity=0.134  Sum_probs=37.5

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++.|||+|.+|.+++..|++.|++|++++|+.++.+.+.+
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~   41 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQ   41 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhC
Confidence            6899999999999999999999999999999999988865

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.14  E-value=0.022  Score=58.26  Aligned_cols=95  Identities=15%  Similarity=-0.005  Sum_probs=61.3

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+... +. +...+...            .++++-. .+.++++.
T Consensus       172 ~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~-~~~~g~~~------------~~l~ell-~~aDvV~l  236 (365)
T 4hy3_A          172 RLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SM-LEENGVEP------------ASLEDVL-TKSDFIFV  236 (365)
T ss_dssp             CCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HH-HHHTTCEE------------CCHHHHH-HSCSEEEE
T ss_pred             cccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HH-HhhcCeee------------CCHHHHH-hcCCEEEE
Confidence            5678999999999999999999999999999999998533 22 22222111            2333333 45678888


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      ++|+.-.-..+..  ...|..+-++.++.|-.
T Consensus       237 ~~Plt~~T~~li~--~~~l~~mk~gailIN~a  266 (365)
T 4hy3_A          237 VAAVTSENKRFLG--AEAFSSMRRGAAFILLS  266 (365)
T ss_dssp             CSCSSCC---CCC--HHHHHTSCTTCEEEECS
T ss_pred             cCcCCHHHHhhcC--HHHHhcCCCCcEEEECc
Confidence            8888755444431  23344445566776643

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.14  E-value=0.17  Score=50.51  Aligned_cols=81  Identities=14%  Similarity=0.028  Sum_probs=55.2

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      ..++.|+|+|.+|.++++.|+..|.  +|.+++++.++++..+.++.... ... ...+++..+..+.. .+.++++.+.
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~-~~~-~~~~~v~~~~~~a~-~~aDvVvi~a   82 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT-PYS-PTTVRVKAGEYSDC-HDADLVVICA   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG-GGS-SSCCEEEECCGGGG-TTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh-hhc-CCCeEEEeCCHHHh-CCCCEEEECC
Confidence            3589999999999999999988884  89999999988887766665432 111 11223322333333 5677777777


Q ss_pred             ccCCch
Q 011136          459 HLGNHL  464 (493)
Q Consensus       459 plG~~~  464 (493)
                      +.+-.|
T Consensus        83 g~~~~~   88 (317)
T 3d0o_A           83 GAAQKP   88 (317)
T ss_dssp             CCCCCT
T ss_pred             CCCCCC
Confidence            665443

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.13  E-value=0.017  Score=57.66  Aligned_cols=46  Identities=26%  Similarity=0.317  Sum_probs=40.8

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|++|||.|+ ||.|.+++..++..|++|+++.|+.++.+.+++.++
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g  195 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELG  195 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC
Confidence            4789999999 999999999999999999999999999887756554

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=95.13  E-value=0.021  Score=55.46  Aligned_cols=47  Identities=21%  Similarity=0.268  Sum_probs=40.4

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .++ |++||.|+ ||.|++++..|++.|++|++++|+.++.+++++.+.
T Consensus        19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~   66 (272)
T 2nwq_A           19 HMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELS   66 (272)
T ss_dssp             --C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT
T ss_pred             CcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh
Confidence            355 88999987 679999999999999999999999999888887664

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=95.11  E-value=0.025  Score=60.69  Aligned_cols=94  Identities=16%  Similarity=0.058  Sum_probs=61.4

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|-+|++++..|...|++|++++|+....+  +..++...            .++++-. .+.++++.
T Consensus       138 ~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~g~~~------------~~l~e~~-~~aDvV~l  202 (529)
T 1ygy_A          138 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPAR--AAQLGIEL------------LSLDDLL-ARADFISV  202 (529)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHH--HHHHTCEE------------CCHHHHH-HHCSEEEE
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCChhH--HHhcCcEE------------cCHHHHH-hcCCEEEE
Confidence            467899999999999999999999999999999999874322  33322111            1333222 45678888


Q ss_pred             ccccCC-chhhHhhhhhHHHHhhccceEeeecc
Q 011136          457 IIHLGN-HLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       457 ~tplG~-~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      ++|+.- ..+.+..   ..+..+-++.+|+|-.
T Consensus       203 ~~P~~~~t~~~i~~---~~~~~~k~g~ilin~a  232 (529)
T 1ygy_A          203 HLPKTPETAGLIDK---EALAKTKPGVIIVNAA  232 (529)
T ss_dssp             CCCCSTTTTTCBCH---HHHTTSCTTEEEEECS
T ss_pred             CCCCchHHHHHhCH---HHHhCCCCCCEEEECC
Confidence            888873 3333321   1334444577777743

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.10  E-value=0.076  Score=55.22  Aligned_cols=89  Identities=25%  Similarity=0.192  Sum_probs=64.5

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEE-EEeC----------ChHHHHHHHH
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANR----------TYGESLTFLR  422 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~-v~~R----------~~~~a~~la~  422 (493)
                      +.|.+.+++..+..       .+.+++|++|+|.|.|.+|+.++..|.+.|++|+ |.++          +.+...++.+
T Consensus       198 g~Gv~~~~~~~~~~-------~g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~  270 (419)
T 3aoe_E          198 GLGALLVLEALAKR-------RGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYE  270 (419)
T ss_dssp             HHHHHHHHHHHHHH-------HTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-------cCCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHH
Confidence            67777777665542       1257889999999999999999999999999766 9888          8888888877


Q ss_pred             HhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          423 LMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       423 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      ..+...    .+    . -+-++.|..+.+|++|+.
T Consensus       271 ~~g~v~----~~----~-~~~~e~~~~~~DVliP~A  297 (419)
T 3aoe_E          271 ATGSLP----RL----D-LAPEEVFGLEAEVLVLAA  297 (419)
T ss_dssp             HHSSCS----CC----C-BCTTTGGGSSCSEEEECS
T ss_pred             hhCCcc----ee----e-ccchhhhccCceEEEecc
Confidence            643110    00    0 122345777889999875

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.10  E-value=0.24  Score=49.21  Aligned_cols=77  Identities=13%  Similarity=-0.043  Sum_probs=54.9

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      ++.|+|+|.+|.++++.|+..+.  +|.+++++.++++..+.++.... .-...-+++.  .-.+.. .+.++++.+.+.
T Consensus         2 KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~-~~~~~~~v~~--~~~~a~-~~aD~Vii~ag~   77 (310)
T 2xxj_A            2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHAT-PFAHPVWVWA--GSYGDL-EGARAVVLAAGV   77 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTG-GGSCCCEEEE--CCGGGG-TTEEEEEECCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhH-hhcCCeEEEE--CCHHHh-CCCCEEEECCCC
Confidence            79999999999999999998884  89999999999998887776543 1111113332  223333 677888877765


Q ss_pred             CCc
Q 011136          461 GNH  463 (493)
Q Consensus       461 G~~  463 (493)
                      .-.
T Consensus        78 ~~~   80 (310)
T 2xxj_A           78 AQR   80 (310)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            544

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=95.09  E-value=0.02  Score=55.24  Aligned_cols=46  Identities=33%  Similarity=0.367  Sum_probs=36.6

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++..+..+
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   69 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELR   69 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence            3467899999987 889999999999999999999999877644443

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.09  E-value=0.16  Score=50.48  Aligned_cols=76  Identities=20%  Similarity=-0.006  Sum_probs=50.2

Q ss_pred             EEEEEecchHHHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          383 LFVVIGAGGAGKALAYGAKAK--GARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~--g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      ++.|+|+|.+|.+++..|+..  |.+|++++|+.++++.++..+...........+++.-.+.++ . .+.++++.++|.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l-~~aDvViiav~~   79 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-T-ANSDIVIITAGL   79 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-G-TTCSEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-H-CCCCEEEEeCCC
Confidence            689999999999999999985  569999999999988776544322110011123443334433 2 556666666654

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.06  E-value=0.037  Score=54.20  Aligned_cols=42  Identities=26%  Similarity=0.404  Sum_probs=36.4

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESL  418 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~  418 (493)
                      ..++||++||.|+ ||.|++++..|++.|++|+++.|+.++..
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~   85 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDA   85 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHH
Confidence            3468999999997 78999999999999999999999876433

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=95.05  E-value=0.029  Score=59.41  Aligned_cols=43  Identities=33%  Similarity=0.406  Sum_probs=39.1

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+..++.+
T Consensus       253 ~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~  295 (479)
T 1v8b_A          253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQ  295 (479)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHH
Confidence            4678999999999999999999999999999999999887643

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=95.05  E-value=0.045  Score=54.54  Aligned_cols=89  Identities=18%  Similarity=0.165  Sum_probs=62.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccccc-CCceEEEEecc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAK-GARVV-IANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTW-HLKFFIAANII  458 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~-g~~i~-v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~i~~n~t  458 (493)
                      .++.|||+|.+|+..+.+|.+. +++|+ |++|+.++++++++.++.. .           .+.++-. .++.++++-+|
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~-----------~~~~~~l~~~~~D~V~i~t   71 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-V-----------RTIDAIEAAADIDAVVICT   71 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-E-----------CCHHHHHHCTTCCEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-c-----------CCHHHHhcCCCCCEEEEeC
Confidence            3799999999999999999886 56654 8999999999999887533 1           2222111 13567888888


Q ss_pred             ccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          459 HLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       459 plG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      |-..|.+....     .. ...-.|+.||.
T Consensus        72 p~~~h~~~~~~-----al-~~gk~v~~EKP   95 (331)
T 4hkt_A           72 PTDTHADLIER-----FA-RAGKAIFCEKP   95 (331)
T ss_dssp             CGGGHHHHHHH-----HH-HTTCEEEECSC
T ss_pred             CchhHHHHHHH-----HH-HcCCcEEEecC
Confidence            88888776642     22 23345777774

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=95.05  E-value=0.0058  Score=61.38  Aligned_cols=94  Identities=12%  Similarity=-0.034  Sum_probs=58.9

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+.++.+.+.....              ..++++-. .+.++++.
T Consensus       135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~--------------~~~l~ell-~~aDiV~l  199 (315)
T 3pp8_A          135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVG--------------REELRAFL-NQTRVLIN  199 (315)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEES--------------HHHHHHHH-HTCSEEEE
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcc--------------cCCHHHHH-hhCCEEEE
Confidence            4577999999999999999999999999999999998764321100000              01222222 34567777


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|+.-.-..+..  ...|..+-++.++++-
T Consensus       200 ~~Plt~~t~~li~--~~~l~~mk~gailIN~  228 (315)
T 3pp8_A          200 LLPNTAQTVGIIN--SELLDQLPDGAYVLNL  228 (315)
T ss_dssp             CCCCCGGGTTCBS--HHHHTTSCTTEEEEEC
T ss_pred             ecCCchhhhhhcc--HHHHhhCCCCCEEEEC
Confidence            7776644333321  1234444446666654

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=95.02  E-value=0.027  Score=53.03  Aligned_cols=47  Identities=28%  Similarity=0.361  Sum_probs=39.8

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~-~R~~~~a~~la~~~~  425 (493)
                      +++|+++|.|+ ||.|++++..|.+.|++|+++ .|+.++.+++.+.+.
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~   51 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFK   51 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHH
Confidence            45789999987 789999999999999999888 788888777776654

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=95.02  E-value=0.034  Score=55.14  Aligned_cols=89  Identities=13%  Similarity=0.016  Sum_probs=59.7

Q ss_pred             CEEEEEecchHHHH-HHHHHHhC-CCeEE-EEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          382 KLFVVIGAGGAGKA-LAYGAKAK-GARVV-IANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       382 ~~vlvlGaGGaara-~~~~L~~~-g~~i~-v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      .++.|||+|.+|+. .+.+|.+. +++++ |++|+.++++++++.++....           .+.++ ..++.++++-+|
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~-----------~~~~~-l~~~~D~V~i~t   73 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYA-----------DSLSS-LAASCDAVFVHS   73 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBC-----------SSHHH-HHTTCSEEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCcc-----------CcHHH-hhcCCCEEEEeC
Confidence            47999999999996 88888765 56655 999999999999987753211           11111 124567888888


Q ss_pred             ccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          459 HLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       459 plG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      |-..+.+....     ... ..-.|+.||.
T Consensus        74 p~~~h~~~~~~-----al~-~G~~v~~eKP   97 (319)
T 1tlt_A           74 STASHFDVVST-----LLN-AGVHVCVDKP   97 (319)
T ss_dssp             CTTHHHHHHHH-----HHH-TTCEEEEESS
T ss_pred             CchhHHHHHHH-----HHH-cCCeEEEeCC
Confidence            87777665542     222 2224777873

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=95.01  E-value=0.033  Score=53.94  Aligned_cols=39  Identities=38%  Similarity=0.541  Sum_probs=35.1

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      .+++|.+||.|+ ||.|++++..|++.|++|++++|+.++
T Consensus         3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   42 (274)
T 3e03_A            3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVA   42 (274)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSC
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchh
Confidence            467899999997 789999999999999999999998764

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=95.01  E-value=0.023  Score=54.96  Aligned_cols=43  Identities=26%  Similarity=0.372  Sum_probs=37.0

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTF  420 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~l  420 (493)
                      .+.+|++||.|+ ||.|++++..|++.|++|++++|+.++.+++
T Consensus        13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   56 (266)
T 3p19_A           13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKAL   56 (266)
T ss_dssp             --CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHh
Confidence            466899999988 7899999999999999999999998877654

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=95.01  E-value=0.041  Score=52.34  Aligned_cols=42  Identities=33%  Similarity=0.438  Sum_probs=36.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh-HHHHH
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY-GESLT  419 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~-~~a~~  419 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+. ++.++
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   47 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA   47 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH
Confidence            356899999987 7899999999999999999999998 76654

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.99  E-value=0.047  Score=54.32  Aligned_cols=39  Identities=23%  Similarity=0.198  Sum_probs=33.8

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .+++|||+|.+|.+++..|++.|.+|++++|+. . +.+.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~-~~i~~   41 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD-Y-ETVKA   41 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT-H-HHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh-H-HHHHh
Confidence            479999999999999999999999999999986 2 45544

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=94.98  E-value=0.043  Score=55.22  Aligned_cols=90  Identities=13%  Similarity=0.025  Sum_probs=63.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhC-CCe-EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccccc-CCceEEEEecc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAK-GAR-VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTW-HLKFFIAANII  458 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~-g~~-i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~i~~n~t  458 (493)
                      .++.|||+|.+|+..+.+|.+. +++ +.|++|+.++++++++.++....           .+.++-. .++.++++-+|
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~-----------~~~~~~l~~~~~D~V~i~t   74 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGD-----------ATMEALLAREDVEMVIITV   74 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCC-----------SSHHHHHHCSSCCEEEECS
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCc-----------CCHHHHhcCCCCCEEEEeC
Confidence            4799999999999999999887 566 55999999999999988754321           1221111 14567888889


Q ss_pred             ccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          459 HLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       459 plG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      |-..|.+.....      +...-.|+.||.
T Consensus        75 p~~~h~~~~~~a------l~~gk~vl~EKP   98 (354)
T 3db2_A           75 PNDKHAEVIEQC------ARSGKHIYVEKP   98 (354)
T ss_dssp             CTTSHHHHHHHH------HHTTCEEEEESS
T ss_pred             ChHHHHHHHHHH------HHcCCEEEEccC
Confidence            988887766422      113344777774

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=94.97  E-value=0.033  Score=54.32  Aligned_cols=49  Identities=27%  Similarity=0.371  Sum_probs=40.0

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH-------HHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG-------ESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~-------~a~~la~~~~  425 (493)
                      ..+++|.+||.|+ ||.|++++..|++.|++|++++|+.+       +.+++++.+.
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~   61 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIE   61 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHH
Confidence            4577999999987 78999999999999999999999977       3455555544

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=94.97  E-value=0.046  Score=54.82  Aligned_cols=41  Identities=20%  Similarity=0.159  Sum_probs=37.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhCC-------CeEEEEeCChH-----HHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKG-------ARVVIANRTYG-----ESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g-------~~i~v~~R~~~-----~a~~la~  422 (493)
                      .++.|||+|.+|.+++..|++.|       .+|++++|+.+     +++.+.+
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~   61 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINT   61 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHh
Confidence            58999999999999999999998       79999999988     7777765

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=94.96  E-value=0.095  Score=52.44  Aligned_cols=45  Identities=24%  Similarity=0.186  Sum_probs=39.5

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      ++.|+|+|.+|.++++.|+..|.  +|++++++.++++..+.++...
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~   48 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRES   48 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhcc
Confidence            68999999999999999998885  8999999999988877766643

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=94.96  E-value=0.041  Score=55.95  Aligned_cols=42  Identities=12%  Similarity=-0.012  Sum_probs=37.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCC-------CeEEEEeCChH-----HHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKG-------ARVVIANRTYG-----ESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g-------~~i~v~~R~~~-----~a~~la~~  423 (493)
                      .++.|||+|.+|.+++..|++.|       .+|++++|+.+     +++.+.+.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~   75 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNK   75 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhc
Confidence            47999999999999999999999       89999999988     88877653

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=94.95  E-value=0.041  Score=53.41  Aligned_cols=48  Identities=35%  Similarity=0.439  Sum_probs=39.6

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+ ++.+++++.+.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~   75 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIA   75 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHH
Confidence            4578999999987 789999999999999999999987 45556665554

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.94  E-value=0.056  Score=57.21  Aligned_cols=43  Identities=14%  Similarity=0.087  Sum_probs=39.5

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      .-++.|||+|-+|..++..|++.|++|++++|+.++.+.+.+.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~   50 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNG   50 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCC
Confidence            3589999999999999999999999999999999999988763

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=94.94  E-value=0.067  Score=55.87  Aligned_cols=44  Identities=34%  Similarity=0.385  Sum_probs=39.6

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTF  420 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~l  420 (493)
                      ..+.|++++|+|.|.+|++++..|...|++|++++|++.++...
T Consensus       207 ~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A  250 (436)
T 3h9u_A          207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQA  250 (436)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHH
Confidence            56789999999999999999999999999999999998776543

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=94.93  E-value=0.01  Score=59.84  Aligned_cols=93  Identities=14%  Similarity=-0.045  Sum_probs=59.9

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.  + +..  ..           ..++++-. .+.++++.
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~--~~-----------~~~l~ell-~~aDvV~~  204 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDY--CT-----------QVSLDEVL-EKSDIITI  204 (331)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTT--CE-----------ECCHHHHH-HHCSEEEE
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhc--cc-----------cCCHHHHH-hhCCEEEE
Confidence            45789999999999999999999999999999999987653  1 110  00           01333222 45677777


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      ++|+.-.-..+..  ...|..+-++.+++|-+
T Consensus       205 ~~p~t~~t~~li~--~~~l~~mk~ga~lin~s  234 (331)
T 1xdw_A          205 HAPYIKENGAVVT--RDFLKKMKDGAILVNCA  234 (331)
T ss_dssp             CCCCCTTTCCSBC--HHHHHTSCTTEEEEECS
T ss_pred             ecCCchHHHHHhC--HHHHhhCCCCcEEEECC
Confidence            7777543333321  12344444566766643

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=94.92  E-value=0.026  Score=54.63  Aligned_cols=45  Identities=29%  Similarity=0.385  Sum_probs=40.4

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      .+|++||.|+ ||.|++++..|++.|++|+++.|+.++.+++.+.+
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   49 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY   49 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc
Confidence            4789999987 88999999999999999999999999988887755

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.92  E-value=0.064  Score=53.38  Aligned_cols=45  Identities=24%  Similarity=0.303  Sum_probs=38.9

Q ss_pred             CCCEEEEEe-cchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlG-aGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|++|||+| +||+|.+++..++..|++|+++.|+.++.+ +++.++
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~~g  193 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLK-IAKEYG  193 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcC
Confidence            478999999 799999999999999999999999988876 555554

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=94.88  E-value=0.03  Score=52.56  Aligned_cols=45  Identities=18%  Similarity=0.234  Sum_probs=39.0

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~-~R~~~~a~~la~~~~  425 (493)
                      +|+++|.|+ ||.|++++..|++.|++|+++ +|+.++.+++.+.+.
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~   47 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEAR   47 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            367999987 789999999999999998887 999999888877654

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=94.87  E-value=0.04  Score=53.28  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=34.0

Q ss_pred             cCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       379 l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      +++|+++|.|+   ||.|++++..|++.|++|++++|+.+
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   43 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            56899999998   69999999999999999999999876

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.86  E-value=0.11  Score=53.42  Aligned_cols=111  Identities=18%  Similarity=0.241  Sum_probs=70.1

Q ss_pred             CCCceeeccccccHHHHHHHhc--CCCCCeEEEccCchHHHhhhhhhhcHHHHHhcceeeEEEeccCCeEEEEecc--HH
Q 011136          280 GFNGVFVHLLVDDIAKFFQTYS--SNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTD--YV  355 (493)
Q Consensus       280 gl~~~y~~~~~~~l~~~~~~l~--~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD--~~  355 (493)
                      |+|..=..+++.+.++|++.++  .+.|.|++.-==-..+.+..++++...                +.+--+|-|  |.
T Consensus       104 gid~~pi~Ldv~~~dEfv~~v~~~~p~F~~I~lED~~~p~~f~il~~~r~~----------------~~ipvf~DDiqGT  167 (398)
T 2a9f_A          104 GVDAIPIVLDTKDTEEIISIVKALAPTFGGINLEDISAPRCFEIEQRLIKE----------------CHIPVFHDDQHGT  167 (398)
T ss_dssp             SCEEEEEECCCCCHHHHHHHHHHHGGGCSEEEECSCCTTHHHHHHHHHHHH----------------CSSCEEEHHHHHH
T ss_pred             CCceeeeEeCCCCHHHHHHHHHHcCCceeEeccccCCChHHHHHHHHhhhc----------------CCcceecchhhhH
Confidence            5664444455567888877764  378999887532234455555544432                112344545  33


Q ss_pred             HH--HHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC
Q 011136          356 GA--ISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (493)
Q Consensus       356 G~--~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~  413 (493)
                      +.  ++++-..++-       .+..++..+++|+|+|-+|.+++.-+...|+ +|++++|+
T Consensus       168 a~V~lAall~al~l-------~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          168 AIVVLAAIFNSLKL-------LKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             HHHHHHHHHHHHHT-------TTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHHHHHHH-------hCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            22  2222221210       1256778899999999999999999999999 99999986

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.86  E-value=0.071  Score=52.53  Aligned_cols=36  Identities=25%  Similarity=0.266  Sum_probs=32.6

Q ss_pred             CCEEEEEe-cchHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          381 GKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       381 ~~~vlvlG-aGGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      .+++.||| +|-+|.+++..|.+.|++|++++|+.+.
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~   57 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA   57 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc
Confidence            45899999 9999999999999999999999998753

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=94.85  E-value=0.13  Score=49.06  Aligned_cols=118  Identities=15%  Similarity=0.167  Sum_probs=68.4

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (493)
Q Consensus        26 Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (493)
                      |..-+...+.++....++.+.+.|++++|+|...   ....+.++.+++..+ .++.-.      |. ..+.    +-.+
T Consensus        28 ii~V~r~~~~~~~~~~~~al~~gGv~~iel~~k~---~~~~~~i~~l~~~~~-~~~iga------gt-vl~~----d~~~   92 (225)
T 1mxs_A           28 ILPVITIAREEDILPLADALAAGGIRTLEVTLRS---QHGLKAIQVLREQRP-ELCVGA------GT-VLDR----SMFA   92 (225)
T ss_dssp             EEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSS---THHHHHHHHHHHHCT-TSEEEE------EC-CCSH----HHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEecCC---ccHHHHHHHHHHhCc-ccEEee------Ce-EeeH----HHHH
Confidence            3344677899999999999989999999999532   122344555555542 222211      22 1222    2345


Q ss_pred             HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       106 ~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      .+++.|+|+|-.- ..+.+..+   ..+..+..+|...|    ||  .|    ..++.+.|+|++|+
T Consensus        93 ~A~~aGAd~v~~p-~~d~~v~~---~~~~~g~~~i~G~~----t~--~e----~~~A~~~Gad~vk~  145 (225)
T 1mxs_A           93 AVEAAGAQFVVTP-GITEDILE---AGVDSEIPLLPGIS----TP--SE----IMMGYALGYRRFKL  145 (225)
T ss_dssp             HHHHHTCSSEECS-SCCHHHHH---HHHHCSSCEECEEC----SH--HH----HHHHHTTTCCEEEE
T ss_pred             HHHHCCCCEEEeC-CCCHHHHH---HHHHhCCCEEEeeC----CH--HH----HHHHHHCCCCEEEE
Confidence            6788899998432 12222221   11223445554444    33  23    45667899999999

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=94.83  E-value=0.089  Score=55.01  Aligned_cols=94  Identities=16%  Similarity=0.152  Sum_probs=65.3

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEE-EEeC----------ChHHHHHHHH
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANR----------TYGESLTFLR  422 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~-v~~R----------~~~~a~~la~  422 (493)
                      +.|.+.+++..+..       .+.+++|++|+|.|.|.+|+.++..|.+.|++|+ |.++          +.+...++.+
T Consensus       215 g~Gv~~~~~~~~~~-------~g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~  287 (440)
T 3aog_A          215 GRGVFITAAAAAEK-------IGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQ  287 (440)
T ss_dssp             HHHHHHHHHHHHHH-------HTCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-------cCCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHH
Confidence            67777777665542       1256889999999999999999999999999655 8877          6777777776


Q ss_pred             HhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          423 LMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       423 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      ..+...    .++....+ +.++.|..+.+|++|+..
T Consensus       288 ~~g~i~----~y~~a~~i-~~~ei~~~~~DIlvPcA~  319 (440)
T 3aog_A          288 EFGGVR----GYPKAEPL-PAADFWGLPVEFLVPAAL  319 (440)
T ss_dssp             HTSSST----TCTTSEEC-CHHHHTTCCCSEEEECSS
T ss_pred             hcCCcc----cCCCceEc-CchhhhcCCCcEEEecCC
Confidence            543111    11111222 223558778899998865

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=94.83  E-value=0.28  Score=46.91  Aligned_cols=118  Identities=16%  Similarity=0.131  Sum_probs=75.2

Q ss_pred             EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136           26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (493)
Q Consensus        26 Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (493)
                      |.-.+...+.+++..-++.+.+.|++++|+++.--   +..+.++.+++..+-.+|= .     |..  .+.    +-.+
T Consensus        36 vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~---~a~e~I~~l~~~~~~~~iG-a-----GTV--lt~----~~a~  100 (232)
T 4e38_A           36 VIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSD---AAVEAIRLLRQAQPEMLIG-A-----GTI--LNG----EQAL  100 (232)
T ss_dssp             EEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTST---THHHHHHHHHHHCTTCEEE-E-----ECC--CSH----HHHH
T ss_pred             EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCC---CHHHHHHHHHHhCCCCEEe-E-----CCc--CCH----HHHH
Confidence            55568889999999999999999999999988632   2245666676655444442 1     222  122    2345


Q ss_pred             HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       106 ~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      .+++.|+++|=. =..+++.++..   ++.+..+|.-..    ||+      -..++.++|||++|+
T Consensus       101 ~Ai~AGA~fIvs-P~~~~~vi~~~---~~~gi~~ipGv~----Tpt------Ei~~A~~~Gad~vK~  153 (232)
T 4e38_A          101 AAKEAGATFVVS-PGFNPNTVRAC---QEIGIDIVPGVN----NPS------TVEAALEMGLTTLKF  153 (232)
T ss_dssp             HHHHHTCSEEEC-SSCCHHHHHHH---HHHTCEEECEEC----SHH------HHHHHHHTTCCEEEE
T ss_pred             HHHHcCCCEEEe-CCCCHHHHHHH---HHcCCCEEcCCC----CHH------HHHHHHHcCCCEEEE
Confidence            678889999821 12233333332   334777777644    543      345567899999998

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=94.81  E-value=0.035  Score=52.22  Aligned_cols=45  Identities=20%  Similarity=0.289  Sum_probs=40.0

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCC-------eEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGA-------RVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~-------~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|++||.|+ ||.|++++..|++.|+       +|++++|+.++.+++.+.+.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~   54 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECR   54 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHH
Confidence            578999987 8899999999999998       89999999998888877664

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=94.81  E-value=0.24  Score=47.10  Aligned_cols=108  Identities=11%  Similarity=0.129  Sum_probs=70.7

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEec---CCCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLD---GLKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER  100 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD---~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~  100 (493)
                      +|+-+|..-|+..+.++++.+.+.|+|++|+|+=   +.+++.. .+.++.+++.++.|+.+++-.. +       ++.|
T Consensus         6 ~i~psila~D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~-d-------p~~~   77 (230)
T 1tqj_A            6 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIV-E-------PEKY   77 (230)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESS-S-------GGGT
T ss_pred             EEEEEeeecCHhHHHHHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEcc-C-------HHHH
Confidence            5899999999999999999988889999999982   1122221 3567788877788999888752 1       1223


Q ss_pred             HHHHHHHHHhCCcEEEEEcc--cccchhHHHhhcCCCCcEEEEEc
Q 011136          101 VDVLRLAMELGADYIDVELQ--VAREFNDSIRGKKPEKCKVIVSS  143 (493)
Q Consensus       101 ~~ll~~~l~~~~dyIDIEl~--~~~~~~~~l~~~~~~~~kiI~S~  143 (493)
                         ++.+++.|+|+|.+=..  ..+...+.+...+..+.++.+|.
T Consensus        78 ---i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~  119 (230)
T 1tqj_A           78 ---VEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVL  119 (230)
T ss_dssp             ---HHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEE
T ss_pred             ---HHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEE
Confidence               45667778988866544  22221111222223456666665

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.81  E-value=0.049  Score=57.19  Aligned_cols=108  Identities=15%  Similarity=0.007  Sum_probs=66.4

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhccc--------ccceEEEEeeccccc-CCceE
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTL--------LFDSVIVIRILLFTW-HLKFF  452 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~--------~~~~~~v~~~l~~~~-~~~~~  452 (493)
                      -++.|||.|-+|.+++..|++.|++|++++|++++.+.|.+.......+..        ...+++.-.++.+.. ..+..
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv   88 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV   88 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence            479999999999999999999999999999999999988763111100000        012344444443222 13455


Q ss_pred             EEEeccccC---Cchh--hHhhhhhHHHHhhccceEeeeccc
Q 011136          453 IAANIIHLG---NHLE--WVTAAFNLFFYLTCNSYVVMEKTE  489 (493)
Q Consensus       453 i~~n~tplG---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  489 (493)
                      |++=.||..   ..||  .+.+........+-++.+|.+++-
T Consensus        89 ii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~ST  130 (446)
T 4a7p_A           89 FIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKST  130 (446)
T ss_dssp             EECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSC
T ss_pred             EEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            555335541   1121  455555444444457788888764

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=94.80  E-value=0.056  Score=54.19  Aligned_cols=91  Identities=18%  Similarity=0.078  Sum_probs=61.9

Q ss_pred             EEEEEecchHHHHHHHHHH-hC-CCeE-EEEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccccc-CCceEEEEecc
Q 011136          383 LFVVIGAGGAGKALAYGAK-AK-GARV-VIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTW-HLKFFIAANII  458 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~-~~-g~~i-~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~i~~n~t  458 (493)
                      ++.|||+|.+|+..+.+|. .. +++| .|++|+.++++++++.++..         +.+..+.++-. .++.++++-+|
T Consensus         4 rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~---------~~~~~~~~~ll~~~~~D~V~i~t   74 (344)
T 3mz0_A            4 RIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLN---------ATVYPNDDSLLADENVDAVLVTS   74 (344)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCC---------CEEESSHHHHHHCTTCCEEEECS
T ss_pred             EEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCC---------CeeeCCHHHHhcCCCCCEEEECC
Confidence            7899999999999999998 54 5664 58999999999999987620         11122322211 13567888889


Q ss_pred             ccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          459 HLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       459 plG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      |-..|.+.....      +...-.|++||-
T Consensus        75 p~~~h~~~~~~a------l~~Gk~vl~EKP   98 (344)
T 3mz0_A           75 WGPAHESSVLKA------IKAQKYVFCEKP   98 (344)
T ss_dssp             CGGGHHHHHHHH------HHTTCEEEECSC
T ss_pred             CchhHHHHHHHH------HHCCCcEEEcCC
Confidence            888887766522      223335777774

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=94.79  E-value=0.23  Score=49.15  Aligned_cols=76  Identities=12%  Similarity=0.022  Sum_probs=50.4

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      ++.|+|+|.+|.++++.|+..|.  +|++++++.++++..+..+.... .-....+++. .+. +.. .+.++++.+++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~-~~~~~~~i~~-~~~-~a~-~~aDvVIi~~~~   77 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAA-PVSHGTRVWH-GGH-SEL-ADAQVVILTAGA   77 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSC-CTTSCCEEEE-ECG-GGG-TTCSEEEECC--
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhh-hhcCCeEEEE-CCH-HHh-CCCCEEEEcCCC
Confidence            68999999999999999999997  89999999988877666554332 1011113332 222 233 567778877754


Q ss_pred             CC
Q 011136          461 GN  462 (493)
Q Consensus       461 G~  462 (493)
                      .-
T Consensus        78 ~~   79 (304)
T 2v6b_A           78 NQ   79 (304)
T ss_dssp             --
T ss_pred             CC
Confidence            33

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=94.79  E-value=0.049  Score=53.50  Aligned_cols=47  Identities=19%  Similarity=0.177  Sum_probs=41.3

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      ..+++++||.|+ |+.|++++..|.+.|++|+++.|+.++.+.+.+.+
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~   55 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRW   55 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHh
Confidence            356889999998 88999999999999999999999998887776654

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=94.78  E-value=0.026  Score=54.42  Aligned_cols=46  Identities=22%  Similarity=0.223  Sum_probs=38.8

Q ss_pred             cCCCEEEEEe---cchHHHHHHHHHHhCCCeEEEEeCChHHH-HHHHHHh
Q 011136          379 LAGKLFVVIG---AGGAGKALAYGAKAKGARVVIANRTYGES-LTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlG---aGGaara~~~~L~~~g~~i~v~~R~~~~a-~~la~~~  424 (493)
                      +++|+++|.|   +||.|++++..|++.|++|++++|+.++. +++++.+
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   54 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL   54 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc
Confidence            5689999999   48999999999999999999999998763 5555443

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=94.78  E-value=0.02  Score=55.22  Aligned_cols=48  Identities=31%  Similarity=0.320  Sum_probs=40.8

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      ++++|++||.|+ ||.|++++..|++.|++|+++.|+.++.+++.+.+.
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~   79 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQK   79 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            367899999987 779999999999999999999999887777765543

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=94.77  E-value=0.03  Score=53.48  Aligned_cols=44  Identities=18%  Similarity=0.301  Sum_probs=38.7

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      |+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   45 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG   45 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence            46888886 789999999999999999999999999888877654

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=94.77  E-value=0.041  Score=52.74  Aligned_cols=38  Identities=32%  Similarity=0.403  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          378 ALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       378 ~l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      .+++|++||.|+   ||.|++++..|++.|++|++++|+.+
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~   45 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            467899999998   69999999999999999999999975

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=94.75  E-value=0.031  Score=55.50  Aligned_cols=49  Identities=31%  Similarity=0.493  Sum_probs=42.4

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC----------hHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT----------YGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~----------~~~a~~la~~~~~  426 (493)
                      .+++|.+||.|+ ||.|++++..|++.|++|++++|+          .++.+++++.+..
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~   83 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITA   83 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHh
Confidence            467899999987 789999999999999999999998          7788888777654

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=94.75  E-value=0.023  Score=54.87  Aligned_cols=40  Identities=30%  Similarity=0.346  Sum_probs=36.2

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESL  418 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~  418 (493)
                      ++||.+||-|+ +|.|++++..|++.|++|++.+|+.++.+
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~   49 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVH   49 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHh
Confidence            58999999988 78999999999999999999999987654

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=94.75  E-value=0.061  Score=53.89  Aligned_cols=90  Identities=18%  Similarity=0.015  Sum_probs=61.6

Q ss_pred             EEEEEecchHHHHHHHHHHhC-CCeE-EEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccC-CceEEEEeccc
Q 011136          383 LFVVIGAGGAGKALAYGAKAK-GARV-VIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWH-LKFFIAANIIH  459 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~-g~~i-~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~i~~n~tp  459 (493)
                      ++.|||+|.+|+..+.+|.+. ++++ .|++|+.++++++++.++...          +..+.++-.. ++.++++-+||
T Consensus         4 rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~----------~~~~~~~ll~~~~~D~V~i~tp   73 (344)
T 3ezy_A            4 RIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEK----------AYKDPHELIEDPNVDAVLVCSS   73 (344)
T ss_dssp             EEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSE----------EESSHHHHHHCTTCCEEEECSC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCc----------eeCCHHHHhcCCCCCEEEEcCC
Confidence            689999999999999998876 4565 589999999999998876421          1122222111 35678888888


Q ss_pred             cCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          460 LGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       460 lG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      -..|.+.....     . ...-.|++||.
T Consensus        74 ~~~h~~~~~~a-----l-~~gk~v~~EKP   96 (344)
T 3ezy_A           74 TNTHSELVIAC-----A-KAKKHVFCEKP   96 (344)
T ss_dssp             GGGHHHHHHHH-----H-HTTCEEEEESC
T ss_pred             CcchHHHHHHH-----H-hcCCeEEEECC
Confidence            88776665421     1 13334777774

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.75  E-value=0.043  Score=54.85  Aligned_cols=43  Identities=23%  Similarity=0.217  Sum_probs=39.4

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      .++.|||+|.+|.+++..|++.|++|++++|+.++++.+.+..
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~   47 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG   47 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcC
Confidence            5799999999999999999999999999999999998887653

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=94.75  E-value=0.036  Score=52.07  Aligned_cols=45  Identities=27%  Similarity=0.408  Sum_probs=38.5

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEE-EeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v-~~R~~~~a~~la~~~~  425 (493)
                      ||+++|.|+ ||.|++++..|++.|++|++ ..|+.++.+++.+.+.
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~   47 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIE   47 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            468899986 78999999999999998888 5899988888877654

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=94.73  E-value=0.041  Score=58.27  Aligned_cols=97  Identities=19%  Similarity=0.086  Sum_probs=62.2

Q ss_pred             ccCC-CEEEEEecchHHHHHHHHHHhC------CCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCc
Q 011136          378 ALAG-KLFVVIGAGGAGKALAYGAKAK------GARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLK  450 (493)
Q Consensus       378 ~l~~-~~vlvlGaGGaara~~~~L~~~------g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~  450 (493)
                      .++| +++.|||.|-+|.+++..|.+.      |.+|++.+|+.+++.+.+...+....+..       ..+..+-. ++
T Consensus        50 ~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~t-------a~s~aEAa-~~  121 (525)
T 3fr7_A           50 AFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGT-------LGDIWETV-SG  121 (525)
T ss_dssp             HTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTC-------EEEHHHHH-HH
T ss_pred             HhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCC-------CCCHHHHH-hc
Confidence            4678 9999999999999999999998      88999888887777777776654321000       01222222 34


Q ss_pred             eEEEEeccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136          451 FFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       451 ~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      .+|++-++|.+.+.+.    +.+....+-++.+|+.
T Consensus       122 ADVVILaVP~~~~~eV----l~eI~p~LK~GaILs~  153 (525)
T 3fr7_A          122 SDLVLLLISDAAQADN----YEKIFSHMKPNSILGL  153 (525)
T ss_dssp             CSEEEECSCHHHHHHH----HHHHHHHSCTTCEEEE
T ss_pred             CCEEEECCChHHHHHH----HHHHHHhcCCCCeEEE
Confidence            5667766666555443    3333344445666654

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=94.73  E-value=0.049  Score=51.79  Aligned_cols=44  Identities=20%  Similarity=0.266  Sum_probs=35.9

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCe-EEEEeCCh--HHHHHHHH
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGAR-VVIANRTY--GESLTFLR  422 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~-i~v~~R~~--~~a~~la~  422 (493)
                      +++|+++|.|+ ||.|++++..|++.|++ |++++|+.  +..+++.+
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~   50 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKA   50 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHH
Confidence            46889999987 78999999999999995 99999986  34444443

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=94.73  E-value=0.031  Score=52.95  Aligned_cols=43  Identities=26%  Similarity=0.276  Sum_probs=36.2

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      +++|++||.|+ ||.|++++..|++ |.+|++++|+.++.+++++
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~   46 (245)
T 3e9n_A            3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE   46 (245)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh
Confidence            45789999988 7899999999987 8899999999999888765

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=94.72  E-value=0.039  Score=53.41  Aligned_cols=48  Identities=25%  Similarity=0.252  Sum_probs=39.6

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYGESLTFLRLMSW  426 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~-~R~~~~a~~la~~~~~  426 (493)
                      +++|.+||.|+ ||.|++++..|++.|++|++. .|+.++.+++++.+..
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~   74 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEA   74 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence            46889999987 789999999999999988776 7788888888876654

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=94.71  E-value=0.032  Score=57.39  Aligned_cols=92  Identities=12%  Similarity=0.040  Sum_probs=60.5

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|.+++|+.+...      ....           ..++++-+ .+.++++.
T Consensus       115 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~------~~~~-----------~~sl~ell-~~aDiV~l  176 (381)
T 3oet_A          115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG------DEGD-----------FRTLDELV-QEADVLTF  176 (381)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT------CCSC-----------BCCHHHHH-HHCSEEEE
T ss_pred             CccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc------cCcc-----------cCCHHHHH-hhCCEEEE
Confidence            568899999999999999999999999999999998543321      0000           12333333 45678888


Q ss_pred             ccccCCc----hhhHhhhhhHHHHhhccceEeeecc
Q 011136          457 IIHLGNH----LEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       457 ~tplG~~----~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      .+|+.-.    -..+..  ...|..+-++.+++|-.
T Consensus       177 ~~Plt~~g~~~T~~li~--~~~l~~mk~gailIN~a  210 (381)
T 3oet_A          177 HTPLYKDGPYKTLHLAD--ETLIRRLKPGAILINAC  210 (381)
T ss_dssp             CCCCCCSSTTCCTTSBC--HHHHHHSCTTEEEEECS
T ss_pred             cCcCCccccccchhhcC--HHHHhcCCCCcEEEECC
Confidence            8887654    233321  13344445577777643

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=94.71  E-value=0.042  Score=52.15  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=39.3

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHhhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR-TYGESLTFLRLMSW  426 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R-~~~~a~~la~~~~~  426 (493)
                      .+|++||-|+ ||.|++++..|++.|++|++..| +.++.+++++.+..
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~   51 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKA   51 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence            4688999987 78999999999999998887765 67888888877654

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=94.70  E-value=0.035  Score=53.41  Aligned_cols=50  Identities=14%  Similarity=0.127  Sum_probs=40.7

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC---hHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT---YGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~---~~~a~~la~~~~~  426 (493)
                      ..+++|.+||.|+ ||.|++++..|++.|++|+++.|+   .++++++++.+..
T Consensus         7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~   60 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELED   60 (262)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHT
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHh
Confidence            4578999999987 789999999999999999998664   5566677666543

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=94.69  E-value=0.043  Score=52.01  Aligned_cols=49  Identities=31%  Similarity=0.334  Sum_probs=41.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEE-EeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v-~~R~~~~a~~la~~~~~  426 (493)
                      .+++|+++|.|+ ||.|++++..|++.|++|++ ..|+.++.+++.+.+..
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~   54 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQS   54 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHh
Confidence            467899999987 78999999999999998777 58888888888776653

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=94.68  E-value=0.044  Score=53.17  Aligned_cols=49  Identities=24%  Similarity=0.452  Sum_probs=39.4

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH-HHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE-SLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~-a~~la~~~~  425 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|+++.|+.++ .+.+++.+.
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   75 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK   75 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHH
Confidence            3467899999987 789999999999999999999998654 455555443

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=94.65  E-value=0.045  Score=52.80  Aligned_cols=50  Identities=26%  Similarity=0.354  Sum_probs=41.1

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEe-CChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~-R~~~~a~~la~~~~~  426 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++.. |+.++.+++++.+..
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~   65 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKA   65 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence            4578999999987 6899999999999999888865 567777777776654

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=94.65  E-value=0.017  Score=57.22  Aligned_cols=41  Identities=22%  Similarity=0.305  Sum_probs=31.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      +||-+||-|-||..++..|.+.|++|+++||+.++++++++
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~   46 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTK   46 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTT
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            57999999999999999999999999999999999987754

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=94.65  E-value=0.052  Score=53.18  Aligned_cols=48  Identities=25%  Similarity=0.315  Sum_probs=39.1

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC--hHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT--YGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~--~~~a~~la~~~~  425 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|+++.|+  .++.+++.+.+.
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~   96 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIE   96 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHH
Confidence            467899999997 789999999999999999999886  345556655443

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.64  E-value=0.033  Score=55.84  Aligned_cols=40  Identities=18%  Similarity=0.271  Sum_probs=34.7

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .++.|||+|.+|.+++..|++.|.+|++++|+ ++.+.+.+
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~   43 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQT   43 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHH
Confidence            57999999999999999999999999999996 56655543

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=94.63  E-value=0.038  Score=56.81  Aligned_cols=91  Identities=13%  Similarity=0.043  Sum_probs=58.5

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.+..     ..+. .           ..++++-. .+.++++.
T Consensus       112 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-----~~g~-~-----------~~~l~ell-~~aDvV~l  173 (380)
T 2o4c_A          112 ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR-----EPDG-E-----------FVSLERLL-AEADVISL  173 (380)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH-----STTS-C-----------CCCHHHHH-HHCSEEEE
T ss_pred             cccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh-----ccCc-c-----------cCCHHHHH-HhCCEEEE
Confidence            46789999999999999999999999999999999875432     0110 0           02333222 35677887


Q ss_pred             ccccCCc----hhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNH----LEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~----~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      .+|+.-.    -..+..  ...|..+-++.+++|-
T Consensus       174 ~~Plt~~g~~~T~~li~--~~~l~~mk~gailIN~  206 (380)
T 2o4c_A          174 HTPLNRDGEHPTRHLLD--EPRLAALRPGTWLVNA  206 (380)
T ss_dssp             CCCCCSSSSSCCTTSBC--HHHHHTSCTTEEEEEC
T ss_pred             eccCccccccchhhhcC--HHHHhhCCCCcEEEEC
Confidence            7887654    222221  1234444456677664

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=94.62  E-value=0.22  Score=50.17  Aligned_cols=48  Identities=15%  Similarity=0.050  Sum_probs=42.4

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      ..+++.|+|+|.+|.++++.|+..|.  +|.+++++.++++..+.++...
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~   69 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHG   69 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhh
Confidence            35789999999999999999999886  8999999999999888777654

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=94.61  E-value=0.025  Score=53.71  Aligned_cols=79  Identities=15%  Similarity=-0.087  Sum_probs=51.6

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEE-e--CChHHHHHHHHHhhhhhhcccccceE-EEEeecccccCCceEEEE
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIA-N--RTYGESLTFLRLMSWLLLNTLLFDSV-IVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~-~--R~~~~a~~la~~~~~~~~~~~~~~~~-~v~~~l~~~~~~~~~i~~  455 (493)
                      +|+++|.|+ ||.|++++..|++.|++|+++ +  |+.++.+++++.+  ...+....+.+ ..+....+.+ ...++++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~-g~iD~lv   77 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN--PGTIALAEQKPERLVDATLQHG-EAIDTIV   77 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS--TTEEECCCCCGGGHHHHHGGGS-SCEEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHHc-CCCCEEE
Confidence            468899987 789999999999999999999 7  9999988887766  11100000000 0111112333 4578888


Q ss_pred             eccccCC
Q 011136          456 NIIHLGN  462 (493)
Q Consensus       456 n~tplG~  462 (493)
                      |...++.
T Consensus        78 ~~Ag~~~   84 (244)
T 1zmo_A           78 SNDYIPR   84 (244)
T ss_dssp             ECCCCCT
T ss_pred             ECCCcCC
Confidence            8876653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=94.59  E-value=0.048  Score=50.02  Aligned_cols=39  Identities=31%  Similarity=0.354  Sum_probs=35.1

Q ss_pred             EEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       383 ~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      +++|.|+ |+.|++++..|.+.|++|+++.|+.++.+.+.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~   41 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH   41 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc
Confidence            6999996 88999999999999999999999998876653

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=94.59  E-value=0.037  Score=60.58  Aligned_cols=76  Identities=16%  Similarity=0.235  Sum_probs=52.9

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh-------------------HHHHHHHHHhhhhhhcccccceEE
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY-------------------GESLTFLRLMSWLLLNTLLFDSVI  438 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~-------------------~~a~~la~~~~~~~~~~~~~~~~~  438 (493)
                      +.+.+|+|+|+||.|..++..|+..|+ +|+|++.+.                   .||+.+++.+...+.    .-++.
T Consensus        15 L~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP----~v~V~   90 (640)
T 1y8q_B           15 VAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYP----KANIV   90 (640)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCT----TCEEE
T ss_pred             HhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCC----CCeEE
Confidence            346799999999999999999999999 999988543                   577777777665542    11333


Q ss_pred             EEee-c-----ccccCCceEEEEecc
Q 011136          439 VIRI-L-----LFTWHLKFFIAANII  458 (493)
Q Consensus       439 v~~~-l-----~~~~~~~~~i~~n~t  458 (493)
                      .... +     .+.+-.+++++++|+
T Consensus        91 a~~~~i~~~~~~~~~~~~~DlVvda~  116 (640)
T 1y8q_B           91 AYHDSIMNPDYNVEFFRQFILVMNAL  116 (640)
T ss_dssp             EEESCTTSTTSCHHHHTTCSEEEECC
T ss_pred             EEecccchhhhhHhhhcCCCEEEECC
Confidence            3221 1     112226688999875

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=94.58  E-value=0.037  Score=52.80  Aligned_cols=44  Identities=27%  Similarity=0.309  Sum_probs=36.5

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +++|++||.|+ ||.|++++..|++.|++|++++|+.+  +++++.+
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l   46 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEI   46 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHH
Confidence            45789999998 88999999999999999999999876  3444444

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.57  E-value=0.03  Score=51.26  Aligned_cols=41  Identities=24%  Similarity=0.319  Sum_probs=36.2

Q ss_pred             CCCEEEEEe-cchHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 011136          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYGESLTF  420 (493)
Q Consensus       380 ~~~~vlvlG-aGGaara~~~~L~~~g~~i~v~~R~~~~a~~l  420 (493)
                      .|++++|.| +||.|++++..++..|++|+++.|+.++.+.+
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~   79 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML   79 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            578999999 59999999999999999999999998877554

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=94.55  E-value=0.07  Score=53.94  Aligned_cols=92  Identities=16%  Similarity=0.074  Sum_probs=61.8

Q ss_pred             CEEEEEecchHHHHHHHHHH-hC-CCeE-EEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccC-CceEEEEec
Q 011136          382 KLFVVIGAGGAGKALAYGAK-AK-GARV-VIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWH-LKFFIAANI  457 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~-~~-g~~i-~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~i~~n~  457 (493)
                      -++.|||+|.+|+..+.+|. .. ++++ .|++|+.++++++++.++..         +.+..++++-.. ++.++++-+
T Consensus        24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~---------~~~~~~~~~ll~~~~~D~V~i~   94 (357)
T 3ec7_A           24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIE---------AKDYNDYHDLINDKDVEVVIIT   94 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCC---------CEEESSHHHHHHCTTCCEEEEC
T ss_pred             eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCC---------CeeeCCHHHHhcCCCCCEEEEc
Confidence            47999999999999999998 44 5664 59999999999999987620         111122222111 356788888


Q ss_pred             cccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          458 IHLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       458 tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      ||-..|.+.....     . ...-.|+.||-
T Consensus        95 tp~~~h~~~~~~a-----l-~aGk~Vl~EKP  119 (357)
T 3ec7_A           95 ASNEAHADVAVAA-----L-NANKYVFCEKP  119 (357)
T ss_dssp             SCGGGHHHHHHHH-----H-HTTCEEEEESS
T ss_pred             CCcHHHHHHHHHH-----H-HCCCCEEeecC
Confidence            8888887766422     1 13345667763

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=94.55  E-value=0.05  Score=52.20  Aligned_cols=36  Identities=22%  Similarity=0.319  Sum_probs=33.3

Q ss_pred             cCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       379 l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      +++|++||.|+   ||.|++++..|++.|++|++++|+.
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   45 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   45 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH
Confidence            56899999998   6999999999999999999999987

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=94.51  E-value=0.055  Score=57.51  Aligned_cols=43  Identities=30%  Similarity=0.410  Sum_probs=39.0

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTF  420 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~l  420 (493)
                      .+.|++|+|+|+|++|+.++..++..|++|++++|+..+++..
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A  313 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQA  313 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4679999999999999999999999999999999999887543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.51  E-value=0.066  Score=51.24  Aligned_cols=45  Identities=20%  Similarity=0.269  Sum_probs=37.3

Q ss_pred             ccCCCEEEEEecc-h--HHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          378 ALAGKLFVVIGAG-G--AGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       378 ~l~~~~vlvlGaG-G--aara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .+++|++||.|++ +  .|++++..|++.|++|+++.|+....+.+.+
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   51 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHE   51 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHH
Confidence            4678999999984 3  9999999999999999999998755554444

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=94.49  E-value=0.028  Score=54.73  Aligned_cols=38  Identities=29%  Similarity=0.295  Sum_probs=34.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      +|+||.+||-|+ +|.|++++..|++.|++|++.+|+.+
T Consensus         8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (261)
T 4h15_A            8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARP   46 (261)
T ss_dssp             CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCch
Confidence            688999999987 78999999999999999999999754

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=94.49  E-value=0.042  Score=53.14  Aligned_cols=39  Identities=44%  Similarity=0.553  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      .+|+||.++|-|+ +|.|++++..|++.|++|++.+|+.+
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~   44 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP   44 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH
Confidence            4688999999987 68999999999999999999999853

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=94.48  E-value=0.052  Score=52.73  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=34.1

Q ss_pred             cCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          379 LAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       379 l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      +++|++||.|+   ||.|++++..|++.|++|++++|+.+
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~   58 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK   58 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            67899999998   59999999999999999999999875

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=94.47  E-value=0.017  Score=58.35  Aligned_cols=92  Identities=14%  Similarity=0.011  Sum_probs=59.9

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.  + +..  .          . ..++++-. .+.++++.
T Consensus       141 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~--~----------~-~~~l~ell-~~aDvV~~  203 (333)
T 1dxy_A          141 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPD--F----------D-YVSLEDLF-KQSDVIDL  203 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTT--C----------E-ECCHHHHH-HHCSEEEE
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhc--c----------c-cCCHHHHH-hcCCEEEE
Confidence            46789999999999999999999999999999999987543  1 100  0          0 01333222 45678888


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ++|+.-.-..+..  ...|..+-++.++++-
T Consensus       204 ~~P~~~~t~~li~--~~~l~~mk~ga~lIn~  232 (333)
T 1dxy_A          204 HVPGIEQNTHIIN--EAAFNLMKPGAIVINT  232 (333)
T ss_dssp             CCCCCGGGTTSBC--HHHHHHSCTTEEEEEC
T ss_pred             cCCCchhHHHHhC--HHHHhhCCCCcEEEEC
Confidence            8887654333321  1234444456666654

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=94.47  E-value=0.14  Score=48.76  Aligned_cols=39  Identities=18%  Similarity=0.177  Sum_probs=33.4

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      .-+|++||.|+ ||.|++++..|++.|++|++++|+.++.
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~   59 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPN   59 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            34789999997 7899999999999999999999987653

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=94.46  E-value=0.054  Score=53.77  Aligned_cols=48  Identities=29%  Similarity=0.384  Sum_probs=39.6

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC------------hHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT------------YGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~------------~~~a~~la~~~~  425 (493)
                      .+++|.+||.|+ ||.|++++..|++.|++|++++|+            .++.+++++.+.
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVE  103 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHH
Confidence            467899999987 789999999999999999999876            666666665544

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=94.45  E-value=0.89  Score=43.94  Aligned_cols=162  Identities=20%  Similarity=0.199  Sum_probs=97.0

Q ss_pred             ecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC-CCCch-hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHH---HH
Q 011136           30 IMGESVDKMVVDMGKANASGADLVEIRLDGLK-NFNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVD---VL  104 (493)
Q Consensus        30 l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~---ll  104 (493)
                      +...+++++.    .+.+.|||-|||.-++-. .+.|+ -.++.+++...+|+.+-+|+  .||-|--++++...   -+
T Consensus         6 vc~~s~~~a~----~A~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRP--R~GdF~Ys~~E~~~M~~Di   79 (256)
T 1twd_A            6 ICCYSMECAL----TAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRP--RGGDFCYSDGEFAAILEDV   79 (256)
T ss_dssp             EEESSHHHHH----HHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCS--SSSCSCCCHHHHHHHHHHH
T ss_pred             EEeCCHHHHH----HHHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHHcCCceEEEECC--CCCCCcCCHHHHHHHHHHH
Confidence            3345665554    344679999999987643 34442 34566677789999999995  45656666655433   34


Q ss_pred             HHHHHhCCcEEEE-----EcccccchhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCC
Q 011136          105 RLAMELGADYIDV-----ELQVAREFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTALD  178 (493)
Q Consensus       105 ~~~l~~~~dyIDI-----El~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s  178 (493)
                      +.+.++|++-|=+     |-..+.+..+++... .++..  +.+|- |+.+++.   .+-++.+.++|+|=|==..-+.+
T Consensus        80 ~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~-a~~~~--vTFHRAfD~~~d~---~~ale~L~~lG~~rILTSG~~~~  153 (256)
T 1twd_A           80 RTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAA-AGPLA--VTFHRAFDMCANP---LYTLNNLAELGIARVLTSGQKSD  153 (256)
T ss_dssp             HHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHH-HTTSE--EEECGGGGGCSCH---HHHHHHHHHHTCCEEEECTTSSS
T ss_pred             HHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHH-hCCCc--EEEECchhccCCH---HHHHHHHHHcCCCEEECCCCCCC
Confidence            5667788887755     233445566777743 24555  45565 8877654   55577777789764433223455


Q ss_pred             HhHHHHHHHHh-ccCCCCEEEEecCC
Q 011136          179 ITDVARVFQIT-VHSQVPIIGLVMGE  203 (493)
Q Consensus       179 ~~D~~~l~~~~-~~~~~PlIa~~MG~  203 (493)
                      ..|.+.+++-+ ...+.+.|..+-|-
T Consensus       154 a~~g~~~L~~Lv~~a~~i~Im~GgGv  179 (256)
T 1twd_A          154 ALQGLSKIMELIAHRDAPIIMAGAGV  179 (256)
T ss_dssp             TTTTHHHHHHHHTSSSCCEEEEESSC
T ss_pred             HHHHHHHHHHHHHhhCCcEEEecCCc
Confidence            66666655543 32233344444443

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=94.45  E-value=0.38  Score=45.10  Aligned_cols=132  Identities=14%  Similarity=0.103  Sum_probs=80.9

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHH
Q 011136           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENER  100 (493)
Q Consensus        22 ~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~  100 (493)
                      +++++++.+-.+++++.+..++++ ..++|.+|+-.-+.-..- .+.++.+++. .+.|+++.+..- +      ..+. 
T Consensus         5 ~~~~lilalD~~~~~~~~~~~~~~-~~~vd~ie~g~~~~~~~G-~~~i~~lr~~~~~~~i~ld~~l~-d------~p~~-   74 (218)
T 3jr2_A            5 TKPMIQIALDQTNLTDAVAVASNV-ASYVDVIEVGTILAFAEG-MKAVSTLRHNHPNHILVCDMKTT-D------GGAI-   74 (218)
T ss_dssp             CCCEEEEEECCSSHHHHHHHHHHH-GGGCSEEEECHHHHHHHT-THHHHHHHHHCTTSEEEEEEEEC-S------CHHH-
T ss_pred             CCCCeEEEeCCCCHHHHHHHHHHh-cCCceEEEeCcHHHHhcC-HHHHHHHHHhCCCCcEEEEEeec-c------cHHH-
Confidence            368899999999999999999885 668999998643211111 2457778776 467887766432 1      1222 


Q ss_pred             HHHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          101 VDVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       101 ~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                        ..+.+.+.|+|+|.+-....++.++++. ..++.+.+.++-.   -+.++.++    ..++.+.|+|.+++
T Consensus        75 --~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~---l~~~T~~~----~~~~~~~g~d~v~~  138 (218)
T 3jr2_A           75 --LSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEI---YGNWTMQD----AKAWVDLGITQAIY  138 (218)
T ss_dssp             --HHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEEC---CSSCCHHH----HHHHHHTTCCEEEE
T ss_pred             --HHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccceee---eecCCHHH----HHHHHHcCccceee
Confidence              4477788999999997665443333332 2223456665411   11122223    33334559998876

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=94.42  E-value=0.0085  Score=60.40  Aligned_cols=40  Identities=28%  Similarity=0.495  Sum_probs=36.5

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+...
T Consensus       136 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  175 (324)
T 3hg7_A          136 QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRE  175 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHH
Confidence            4678999999999999999999999999999999998743

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=94.41  E-value=0.69  Score=43.42  Aligned_cols=88  Identities=14%  Similarity=0.230  Sum_probs=59.9

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe-c--CCCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCH
Q 011136           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRL-D--GLKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGDE   97 (493)
Q Consensus        22 ~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl-D--~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~   97 (493)
                      +..+|+-.+..-|..++.+.++.+.+.|+|++|+++ |  +.++... .+.++.+++.++.|+.+++--.        +.
T Consensus         9 ~~~~i~p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~~~~~~v~l~vn--------d~   80 (230)
T 1rpx_A            9 SDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIV--------EP   80 (230)
T ss_dssp             TSCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESS--------SH
T ss_pred             CceEEEEEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhccCCcEEEEEEec--------CH
Confidence            334588888999999999999988888999999997 3  2232221 3567777776677888776421        12


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEcc
Q 011136           98 NERVDVLRLAMELGADYIDVELQ  120 (493)
Q Consensus        98 ~~~~~ll~~~l~~~~dyIDIEl~  120 (493)
                      +   +.++.+.+.|+|+|-+=..
T Consensus        81 ~---~~v~~~~~~Gad~v~vh~~  100 (230)
T 1rpx_A           81 D---QRVPDFIKAGADIVSVHCE  100 (230)
T ss_dssp             H---HHHHHHHHTTCSEEEEECS
T ss_pred             H---HHHHHHHHcCCCEEEEEec
Confidence            3   3444556778888765444

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.41  E-value=0.052  Score=56.23  Aligned_cols=44  Identities=23%  Similarity=0.197  Sum_probs=39.8

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      +.+.+|+|+|+|.+|..++..+..+|++|++++|+.++.+.+.+
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~  231 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS  231 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            56789999999999999999999999999999999988776654

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=94.39  E-value=0.47  Score=44.68  Aligned_cols=112  Identities=13%  Similarity=0.125  Sum_probs=68.8

Q ss_pred             HHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCC-CCCCCCCCHHHHHHHHHHHHHhCCcEE
Q 011136           37 KMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIW-EGGQYDGDENERVDVLRLAMELGADYI  115 (493)
Q Consensus        37 e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~-eGG~~~~~~~~~~~ll~~~l~~~~dyI  115 (493)
                      ++.+.++.+.+.|++.++++       . .+.++.+++.+++|++--+|..- +++..-...   .+.++.+++.|+|+|
T Consensus        37 ~~~~~a~~~~~~G~~~i~~~-------~-~~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~---~~~i~~~~~~Gad~V  105 (234)
T 1yxy_A           37 IMPLMAKAAQEAGAVGIRAN-------S-VRDIKEIQAITDLPIIGIIKKDYPPQEPFITAT---MTEVDQLAALNIAVI  105 (234)
T ss_dssp             SHHHHHHHHHHHTCSEEEEE-------S-HHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCS---HHHHHHHHTTTCSEE
T ss_pred             hHHHHHHHHHHCCCcEeecC-------C-HHHHHHHHHhCCCCEEeeEcCCCCccccccCCh---HHHHHHHHHcCCCEE
Confidence            44555555567799999874       1 24677888878999965555332 333322222   233556778899999


Q ss_pred             EEEcccc--------cchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 011136          116 DVELQVA--------REFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV  170 (493)
Q Consensus       116 DIEl~~~--------~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIv  170 (493)
                      .+.....        .+.++.+... .++..++++.|.    +  ++    ..++.+.|+|++
T Consensus       106 ~l~~~~~~~~~~~~~~~~i~~i~~~-~~~~~v~~~~~t----~--~e----a~~a~~~Gad~i  157 (234)
T 1yxy_A          106 AMDCTKRDRHDGLDIASFIRQVKEK-YPNQLLMADIST----F--DE----GLVAHQAGIDFV  157 (234)
T ss_dssp             EEECCSSCCTTCCCHHHHHHHHHHH-CTTCEEEEECSS----H--HH----HHHHHHTTCSEE
T ss_pred             EEcccccCCCCCccHHHHHHHHHHh-CCCCeEEEeCCC----H--HH----HHHHHHcCCCEE
Confidence            8876532        2344444433 236778887762    2  22    566778899997

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=94.36  E-value=0.058  Score=54.50  Aligned_cols=40  Identities=43%  Similarity=0.559  Sum_probs=36.3

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      ..++||++||.|+ ||.|++++..|++.|++|+++.|+.++
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~   81 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQP   81 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            4578999999987 889999999999999999999999775

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=94.36  E-value=0.058  Score=49.77  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=34.7

Q ss_pred             EEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 011136          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTF  420 (493)
Q Consensus       383 ~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~l  420 (493)
                      ++||.|+ |+.|++++..|.+.|++|+++.|+.++.+.+
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~   40 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR   40 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc
Confidence            5899998 8899999999999999999999998887655

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.35  E-value=0.057  Score=53.50  Aligned_cols=40  Identities=20%  Similarity=0.210  Sum_probs=36.7

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .+++|||+|.+|.+++..|+ .|.+|++++|+.++.+.+.+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~   42 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQS   42 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHh
Confidence            47999999999999999999 88899999999988888865

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=94.33  E-value=0.03  Score=56.81  Aligned_cols=94  Identities=18%  Similarity=0.072  Sum_probs=62.3

Q ss_pred             ccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       376 ~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      +..+.|+++.|||.|.+|++++..|...|++|+.++|+.++.  .    .. .        +.. .++++-. .+.++++
T Consensus       143 ~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~----~~-~--------~~~-~~l~ell-~~aDvV~  205 (343)
T 2yq5_A          143 SNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE--F----EP-F--------LTY-TDFDTVL-KEADIVS  205 (343)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG--G----TT-T--------CEE-CCHHHHH-HHCSEEE
T ss_pred             ccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh--h----hc-c--------ccc-cCHHHHH-hcCCEEE
Confidence            346789999999999999999999999999999999987541  1    00 0        000 1333333 4568888


Q ss_pred             eccccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          456 NIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       456 n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      .++|+.-.-..+..  ...|..+-++.++.|-.
T Consensus       206 l~~Plt~~t~~li~--~~~l~~mk~gailIN~a  236 (343)
T 2yq5_A          206 LHTPLFPSTENMIG--EKQLKEMKKSAYLINCA  236 (343)
T ss_dssp             ECCCCCTTTTTCBC--HHHHHHSCTTCEEEECS
T ss_pred             EcCCCCHHHHHHhh--HHHHhhCCCCcEEEECC
Confidence            88887654333321  23344445567776643

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=94.33  E-value=0.046  Score=54.60  Aligned_cols=91  Identities=12%  Similarity=0.002  Sum_probs=61.8

Q ss_pred             CEEEEEecchHHHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccccc-CCceEEEEecc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAK-GARVV-IANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTW-HLKFFIAANII  458 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~-g~~i~-v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~i~~n~t  458 (493)
                      .++.|||+|.+|+..+.+|.+. +++|+ |++|+.++++++++.++....          ..+.++-. .++.++++-+|
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~----------~~~~~~ll~~~~~D~V~i~t   75 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVA----------YGSYEELCKDETIDIIYIPT   75 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCC----------BSSHHHHHHCTTCSEEEECC
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCce----------eCCHHHHhcCCCCCEEEEcC
Confidence            4799999999999999999886 45654 899999999999998764210          01121111 13567788888


Q ss_pred             ccCCchhhHhhhhhHHHHhhccceEeeecc
Q 011136          459 HLGNHLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       459 plG~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      |-..|.+....     ... ..-.|++||.
T Consensus        76 p~~~h~~~~~~-----al~-~gk~vl~EKP   99 (330)
T 3e9m_A           76 YNQGHYSAAKL-----ALS-QGKPVLLEKP   99 (330)
T ss_dssp             CGGGHHHHHHH-----HHH-TTCCEEECSS
T ss_pred             CCHHHHHHHHH-----HHH-CCCeEEEeCC
Confidence            88887766542     222 2334777775

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.33  E-value=0.39  Score=47.28  Aligned_cols=40  Identities=28%  Similarity=0.436  Sum_probs=35.5

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTF  420 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~l  420 (493)
                      ..++.|||+|.+|.++++.|+..|.  +|++++|+.++++..
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~   48 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAE   48 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHH
Confidence            3589999999999999999999997  999999998877643

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=94.31  E-value=0.051  Score=52.33  Aligned_cols=47  Identities=19%  Similarity=0.208  Sum_probs=39.9

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHhhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYGESLTFLRLMSW  426 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~-~R~~~~a~~la~~~~~  426 (493)
                      ++|.+||.|+ ||.|++++..|++.|++|++. .|+.++.+++.+.+..
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~   73 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITE   73 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHh
Confidence            4678999987 789999999999999988775 8999988888776653

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.31  E-value=0.13  Score=54.55  Aligned_cols=42  Identities=21%  Similarity=0.047  Sum_probs=38.5

Q ss_pred             CCEEEEEecchHHHHHHHHHHhC-CC-eEEEEeCChH----HHHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYG----ESLTFLR  422 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~-g~-~i~v~~R~~~----~a~~la~  422 (493)
                      -.++.|||+|-+|..++..|++. |+ +|++++|+.+    +.+.|.+
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~   65 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNR   65 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHh
Confidence            35899999999999999999999 99 9999999999    8887765

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=94.31  E-value=0.68  Score=44.61  Aligned_cols=113  Identities=13%  Similarity=0.070  Sum_probs=77.9

Q ss_pred             CCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC---CCCCCc-hhHHHHHHhhC-CCcEEEEeccCCCCCCCCC
Q 011136           21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDG---LKNFNP-RENIKTLIKES-PVPTLFTYRPIWEGGQYDG   95 (493)
Q Consensus        21 ~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~---l~~~~~-~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~   95 (493)
                      +++++|+-+|..-|...+.++++.+.+.|+|.+.+++=.   -+++.- .+.++.+|+.+ ++|+-+++-..        
T Consensus        25 m~~~~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~--------   96 (246)
T 3inp_A           25 MKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVK--------   96 (246)
T ss_dssp             --CCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECS--------
T ss_pred             ccCCeeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeC--------
Confidence            445889999999999999999999888899999997631   122221 35688888888 89999998742        


Q ss_pred             CHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcc
Q 011136           96 DENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSH  144 (493)
Q Consensus        96 ~~~~~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H  144 (493)
                      +.+.|   ++.+.+.|+|+|.+=....++..+.+...++.+.|+.++.+
T Consensus        97 ~p~~~---i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvaln  142 (246)
T 3inp_A           97 PVDAL---IESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALN  142 (246)
T ss_dssp             SCHHH---HHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEEC
T ss_pred             CHHHH---HHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEec
Confidence            11334   45667889999998655444333333333456777777765

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=94.28  E-value=0.074  Score=52.12  Aligned_cols=44  Identities=18%  Similarity=0.208  Sum_probs=36.4

Q ss_pred             ccCCCEEEEEecc-h--HHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          378 ALAGKLFVVIGAG-G--AGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       378 ~l~~~~vlvlGaG-G--aara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      .+++|++||.|++ +  .|++++..|++.|++|+++.|+.+..+.+.
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   74 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVE   74 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            4779999999983 4  999999999999999999999965444433

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.27  E-value=0.037  Score=51.86  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=37.1

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCC--CeEEEEeCChHHHHHHH
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKG--ARVVIANRTYGESLTFL  421 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g--~~i~v~~R~~~~a~~la  421 (493)
                      ++|+++|.|+ ||.|++++..|++.|  ++|+++.|+.++.+++.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~   46 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK   46 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHH
Confidence            3688999987 789999999999999  89999999988877664

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=94.26  E-value=0.043  Score=50.83  Aligned_cols=40  Identities=13%  Similarity=0.171  Sum_probs=35.8

Q ss_pred             CEEEEEec-chHHHHHHHHHH-hCCCeEEEEeCChH-HHHHHH
Q 011136          382 KLFVVIGA-GGAGKALAYGAK-AKGARVVIANRTYG-ESLTFL  421 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~-~~g~~i~v~~R~~~-~a~~la  421 (493)
                      |+++|.|+ |+.|++++..|. +.|++|+++.|+.+ ++++++
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~   48 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI   48 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc
Confidence            67999996 889999999999 89999999999988 777665

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=94.26  E-value=0.017  Score=54.97  Aligned_cols=42  Identities=26%  Similarity=0.434  Sum_probs=36.4

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESL  418 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~  418 (493)
                      ..+++|+++|.|+ ||.|++++..|++.|++|+++.|+.++.+
T Consensus        11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~   53 (247)
T 1uzm_A           11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK   53 (247)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence            4577899999987 78999999999999999999999876543

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=94.26  E-value=0.093  Score=55.58  Aligned_cols=80  Identities=15%  Similarity=0.001  Sum_probs=52.3

Q ss_pred             CEEEEEecchH--HHHHHHHHHhC----CCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136          382 KLFVVIGAGGA--GKALAYGAKAK----GARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       382 ~~vlvlGaGGa--ara~~~~L~~~----g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      .++.|||||.+  |.+++..|+..    |.+|++++|+.++++.................+++.-.++.+.. .+.++++
T Consensus         4 ~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal-~dAD~VI   82 (480)
T 1obb_A            4 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVI-IDADFVI   82 (480)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH-TTCSEEE
T ss_pred             CEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHh-CCCCEEE
Confidence            58999999986  56667788754    55999999999998886554322211111123555544443334 6778899


Q ss_pred             eccccCC
Q 011136          456 NIIHLGN  462 (493)
Q Consensus       456 n~tplG~  462 (493)
                      .++|.|-
T Consensus        83 iaagv~~   89 (480)
T 1obb_A           83 NTAMVGG   89 (480)
T ss_dssp             ECCCTTH
T ss_pred             ECCCccc
Confidence            8888644

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=94.23  E-value=0.055  Score=51.92  Aligned_cols=49  Identities=22%  Similarity=0.270  Sum_probs=39.8

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEE-EeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v-~~R~~~~a~~la~~~~~  426 (493)
                      .+.+|++||.|+ ||.|++++..|++.|++|++ ..|+.++.+++.+.+..
T Consensus        23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~   73 (267)
T 4iiu_A           23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVA   73 (267)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh
Confidence            467889999988 78999999999999997755 67888888888776654

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=94.22  E-value=0.3  Score=48.38  Aligned_cols=46  Identities=11%  Similarity=0.094  Sum_probs=40.6

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      ||.|||||+.|.++++.|+..+.  ++.+++.+.++++..+.++....
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~   49 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAA   49 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhccc
Confidence            68999999999999999988884  99999999999988888877643

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=94.20  E-value=3.9  Score=42.95  Aligned_cols=210  Identities=12%  Similarity=0.050  Sum_probs=130.2

Q ss_pred             HHHHHHHHHhhhhcCCCEEEEE----ec----CCCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136           35 VDKMVVDMGKANASGADLVEIR----LD----GLKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (493)
Q Consensus        35 ~~e~~~~~~~~~~~~aD~vElR----lD----~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (493)
                      .++.+.-++.+.+.|.+.+|.-    .|    ++ .-++.+.++.+++. .+.++..-+|..+--|.....++.....++
T Consensus        29 ~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~-~~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~~v~  107 (464)
T 2nx9_A           29 IDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFL-GEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFVE  107 (464)
T ss_dssp             GGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTT-CCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEeCcCccccchhhcc-CCCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHHHHH
Confidence            3344444455556799999995    22    12 22445667777664 355666667765555654445555566788


Q ss_pred             HHHHhCCcEEEEEccccc-chhHHH-hhcCCCCcEEEEEcccCCCCC-CHHHHHHHHHHHHHcCCCEEEEEeec--CCHh
Q 011136          106 LAMELGADYIDVELQVAR-EFNDSI-RGKKPEKCKVIVSSHNYQYTP-SVEDLSNLVARIQASGADIVKFATTA--LDIT  180 (493)
Q Consensus       106 ~~l~~~~dyIDIEl~~~~-~~~~~l-~~~~~~~~kiI~S~H~f~~tp-~~~el~~~~~~~~~~gaDIvKia~~a--~s~~  180 (493)
                      .+++.|++.|-|=....+ +.+... ..+++.+.++.++.|.+..++ +.+.+.+..+++.+.|||++-|+=+.  -+|.
T Consensus       108 ~a~~~Gvd~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~  187 (464)
T 2nx9_A          108 RAVKNGMDVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIALKDMAGILTPY  187 (464)
T ss_dssp             HHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHH
T ss_pred             HHHhCCcCEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCcCHH
Confidence            999999999887433322 222222 233456778888887666666 66779999999999999999988554  4688


Q ss_pred             HHHHHHHHhcc-CCCCEEEE--ecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhhc
Q 011136          181 DVARVFQITVH-SQVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF  246 (493)
Q Consensus       181 D~~~l~~~~~~-~~~PlIa~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~~  246 (493)
                      ++.++.+.+.+ .+.|+-.-  +..-++...-+..-.-|....=+++..- ....||++++++.-.++.
T Consensus       188 ~v~~lv~~l~~~~~~~i~~H~Hnd~GlAvAN~laAv~AGa~~VD~ti~g~-gertGN~~lE~lv~~L~~  255 (464)
T 2nx9_A          188 AAEELVSTLKKQVDVELHLHCHSTAGLADMTLLKAIEAGVDRVDTAISSM-SGTYGHPATESLVATLQG  255 (464)
T ss_dssp             HHHHHHHHHHHHCCSCEEEEECCTTSCHHHHHHHHHHTTCSEEEEBCGGG-CSTTSCCBHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccc-CCCCcCHHHHHHHHHHHh
Confidence            88888876543 35665543  3333444444444444443332333321 234799999888776663

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=94.17  E-value=0.07  Score=61.47  Aligned_cols=77  Identities=13%  Similarity=0.096  Sum_probs=56.7

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhhhcccccceEE
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLLLNTLLFDSVI  438 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~~~~~~~~~~~  438 (493)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++.+                   ..||+.+++.+...+.    .-.+.
T Consensus        25 L~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP----~v~v~  100 (1015)
T 3cmm_A           25 MQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNA----YVPVN  100 (1015)
T ss_dssp             HTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCT----TSCEE
T ss_pred             HhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHCC----CCeEE
Confidence            567899999999999999999999999 99999854                   3588888887776552    11333


Q ss_pred             EEe-ecccccCCceEEEEeccc
Q 011136          439 VIR-ILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       439 v~~-~l~~~~~~~~~i~~n~tp  459 (493)
                      +.. .+...+-.+++++++++.
T Consensus       101 ~~~~~l~~~~l~~~DvVv~~~d  122 (1015)
T 3cmm_A          101 VLDSLDDVTQLSQFQVVVATDT  122 (1015)
T ss_dssp             ECCCCCCSTTGGGCSEEEECTT
T ss_pred             EecCCCCHHHHhcCCEEEEcCC
Confidence            322 222334467899998764

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=94.17  E-value=0.041  Score=53.20  Aligned_cols=41  Identities=24%  Similarity=0.311  Sum_probs=35.3

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~   51 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD   51 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc
Confidence            4678999999998 7899999999999999999999987654

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=94.15  E-value=1.1  Score=45.15  Aligned_cols=93  Identities=17%  Similarity=0.163  Sum_probs=64.4

Q ss_pred             cEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC---------CCC-C--Cc---hhHHHHHHhhCCCcEEEEeccCC
Q 011136           24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDG---------LKN-F--NP---RENIKTLIKESPVPTLFTYRPIW   88 (493)
Q Consensus        24 ~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~---------l~~-~--~~---~~~l~~l~~~~~~PiI~T~R~~~   88 (493)
                      ..+++.|.+++.+++..-++.+.+.|+|.||+-...         +.. +  ++   .+.++.+++...+|+.+-+|...
T Consensus        58 ~p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~  137 (350)
T 3b0p_A           58 HPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGL  137 (350)
T ss_dssp             CSEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCB
T ss_pred             CeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCc
Confidence            346789999999999888888878899999998742         110 1  11   13345555667899988888522


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 011136           89 EGGQYDGDENERVDVLRLAMELGADYIDVEL  119 (493)
Q Consensus        89 eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl  119 (493)
                      +   -..+.++..++.+.+.+.|+++|.|.-
T Consensus       138 ~---~~~~~~~~~~~a~~l~~aG~d~I~V~~  165 (350)
T 3b0p_A          138 E---GKETYRGLAQSVEAMAEAGVKVFVVHA  165 (350)
T ss_dssp             T---TCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             C---ccccHHHHHHHHHHHHHcCCCEEEEec
Confidence            1   112334567778888889999999854

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=94.14  E-value=0.14  Score=51.23  Aligned_cols=77  Identities=14%  Similarity=0.100  Sum_probs=54.9

Q ss_pred             EEEEEecchHHHH-HHHHHHhC-CCeE-EEEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccccc-CCceEEEEecc
Q 011136          383 LFVVIGAGGAGKA-LAYGAKAK-GARV-VIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTW-HLKFFIAANII  458 (493)
Q Consensus       383 ~vlvlGaGGaara-~~~~L~~~-g~~i-~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~i~~n~t  458 (493)
                      |+-|||+|.+|+. .+.++... +++| .|++|+.++++++++.++...          +..+.++-. .++.++++-+|
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~----------~y~d~~ell~~~~iDaV~I~t   94 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPH----------AFGSYEEMLASDVIDAVYIPL   94 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSE----------EESSHHHHHHCSSCSEEEECS
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCe----------eeCCHHHHhcCCCCCEEEEeC
Confidence            7999999999975 56777776 4565 599999999999999887532          112222111 14567888889


Q ss_pred             ccCCchhhHhh
Q 011136          459 HLGNHLEWVTA  469 (493)
Q Consensus       459 plG~~~~~~~~  469 (493)
                      |-..|.+....
T Consensus        95 P~~~H~~~~~~  105 (350)
T 4had_A           95 PTSQHIEWSIK  105 (350)
T ss_dssp             CGGGHHHHHHH
T ss_pred             CCchhHHHHHH
Confidence            98888776653

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=94.13  E-value=0.038  Score=52.74  Aligned_cols=45  Identities=11%  Similarity=0.095  Sum_probs=37.0

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCC---CeEEEEeCChHHHHHHH
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKG---ARVVIANRTYGESLTFL  421 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g---~~i~v~~R~~~~a~~la  421 (493)
                      ..+++|++||.|+ ||.|++++..|++.|   ++|+++.|+.++.+.+.
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~   65 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE   65 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHH
Confidence            4577899999987 789999999999999   89999999987766553

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=94.08  E-value=0.052  Score=54.09  Aligned_cols=50  Identities=26%  Similarity=0.432  Sum_probs=41.8

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEE---------eCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA---------NRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~---------~R~~~~a~~la~~~~~  426 (493)
                      ..+++|.+||.|+ ||.|++++..|++.|++|++.         .|+.++++++++.+..
T Consensus         5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~   64 (319)
T 1gz6_A            5 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR   64 (319)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHh
Confidence            3467899999987 789999999999999999986         5678888888776653

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.08  E-value=0.083  Score=52.50  Aligned_cols=45  Identities=27%  Similarity=0.331  Sum_probs=39.3

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|++++|.|+ ||.|++++..++..|++|+++.|+.++.+.+ +.++
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~g  190 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQIG  190 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTT
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HhcC
Confidence            5789999998 9999999999999999999999998887766 5543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.06  E-value=0.059  Score=51.79  Aligned_cols=42  Identities=14%  Similarity=0.208  Sum_probs=37.7

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .++++|.|||..|++++..|.+.|++|+++.|+.++.+.+..
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~   46 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA   46 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh
Confidence            368999999999999999999999999999999988876653

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=94.05  E-value=0.078  Score=50.57  Aligned_cols=44  Identities=18%  Similarity=0.167  Sum_probs=36.7

Q ss_pred             cccCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 011136          377 SALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTYGESLTF  420 (493)
Q Consensus       377 ~~l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~~~a~~l  420 (493)
                      ..+++|++||.|+   ||.|++++..|++.|++|+++.|+....+.+
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~   56 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRI   56 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHH
Confidence            4578999999996   5899999999999999999999985443333

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=94.03  E-value=1.2  Score=42.22  Aligned_cols=152  Identities=20%  Similarity=0.213  Sum_probs=94.8

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 011136           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (493)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~  111 (493)
                      ..+.+++..-++++.+.++++|=+.--+.      +.....++.++++ +.|+=.-+.|..   +.+.+..-.+.+++.|
T Consensus        15 ~~t~~~i~~l~~~a~~~~~~aVcv~p~~v------~~~~~~l~~~~v~-v~~vigFP~G~~---~~~~k~~e~~~Ai~~G   84 (220)
T 1ub3_A           15 TATLEEVAKAAEEALEYGFYGLCIPPSYV------AWVRARYPHAPFR-LVTVVGFPLGYQ---EKEVKALEAALACARG   84 (220)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEECCGGGH------HHHHHHCTTCSSE-EEEEESTTTCCS---CHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhCCCEEEECHHHH------HHHHHHhCCCCce-EEEEecCCCCCC---chHHHHHHHHHHHHcC
Confidence            45688888888888888888875432221      1222222333444 444434444432   4466777788999999


Q ss_pred             CcEEEEEccccc----------chhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe----ec
Q 011136          112 ADYIDVELQVAR----------EFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT----TA  176 (493)
Q Consensus       112 ~dyIDIEl~~~~----------~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~----~a  176 (493)
                      +|-||+=++...          +.+.++.. .+....|+|+-...    ++.+++...-+-+.++|||+||--+    -.
T Consensus        85 Adevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~----l~~e~i~~a~~ia~eaGADfVKTsTGf~~~g  160 (220)
T 1ub3_A           85 ADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGY----FSPEEIARLAEAAIRGGADFLKTSTGFGPRG  160 (220)
T ss_dssp             CSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGG----SCHHHHHHHHHHHHHHTCSEEECCCSSSSCC
T ss_pred             CCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCC----CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC
Confidence            999999776541          12333333 33457888885543    3567788888888899999999884    23


Q ss_pred             CCHhHHHHHHHHhccCCCCEEE
Q 011136          177 LDITDVARVFQITVHSQVPIIG  198 (493)
Q Consensus       177 ~s~~D~~~l~~~~~~~~~PlIa  198 (493)
                      -+.+|+..+.+.. ..+.|+-+
T Consensus       161 at~~dv~~m~~~v-g~~v~Vka  181 (220)
T 1ub3_A          161 ASLEDVALLVRVA-QGRAQVKA  181 (220)
T ss_dssp             CCHHHHHHHHHHH-TTSSEEEE
T ss_pred             CCHHHHHHHHHhh-CCCCeEEE
Confidence            3778887666553 23344433

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=94.01  E-value=0.35  Score=44.68  Aligned_cols=130  Identities=18%  Similarity=0.203  Sum_probs=85.3

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC-CCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHH
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDG-LKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVD  102 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~-l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (493)
                      ++++.+-.+++++.+..++.+ ..++|++|+=.-+ +.. - .+.++.+++. .+.|+.++.-.. .      .. ++  
T Consensus         2 ~li~a~D~~~~~~~~~~~~~~-~~~~diie~G~p~~~~~-g-~~~i~~ir~~~~~~~i~~~~~~~-~------~~-~~--   68 (211)
T 3f4w_A            2 KLQLALDELTLPEAMVFMDKV-VDDVDIIEVGTPFLIRE-G-VNAIKAIKEKYPHKEVLADAKIM-D------GG-HF--   68 (211)
T ss_dssp             EEEEEECSCCHHHHHHHHHHH-GGGCSEEEECHHHHHHH-T-THHHHHHHHHCTTSEEEEEEEEC-S------CH-HH--
T ss_pred             cEEEEeCCCCHHHHHHHHHHh-hcCccEEEeCcHHHHhc-c-HHHHHHHHHhCCCCEEEEEEEec-c------ch-HH--
Confidence            578889999999999999887 4689999986532 110 1 2467788876 588988776542 1      11 22  


Q ss_pred             HHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 011136          103 VLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (493)
Q Consensus       103 ll~~~l~~~~dyIDIEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia  173 (493)
                      +++.+.+.|+|+|-+=....++.++.+. ..++.+.++++..++    |.  +..+.++++.+.|+|++.+-
T Consensus        69 ~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~----~~--t~~~~~~~~~~~g~d~i~v~  134 (211)
T 3f4w_A           69 ESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMIC----VD--DLPARVRLLEEAGADMLAVH  134 (211)
T ss_dssp             HHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTT----CS--SHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecC----CC--CHHHHHHHHHHcCCCEEEEc
Confidence            3678888999999986544323333333 223347788876432    21  23566777888899998653

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=93.98  E-value=0.11  Score=52.43  Aligned_cols=93  Identities=13%  Similarity=0.083  Sum_probs=61.3

Q ss_pred             CEEEEEecchHHHHHHHHHHhCC-Ce-EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccccc-CCceEEEEecc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKG-AR-VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTW-HLKFFIAANII  458 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g-~~-i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~i~~n~t  458 (493)
                      -++.|||+|.+|+..+.+|.... ++ +.|++|+.++++++++.++...       .+.+..+.++-. .++.++++-+|
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~-------~~~~~~~~~~ll~~~~~D~V~i~t   79 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPE-------STKIHGSYESLLEDPEIDALYVPL   79 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCT-------TCEEESSHHHHHHCTTCCEEEECC
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCC-------CCeeeCCHHHHhcCCCCCEEEEcC
Confidence            47999999999999999998764 55 5699999999999998876310       112223332221 13567888888


Q ss_pred             ccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          459 HLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       459 plG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      |=..|.+....     ... ..-.|++||
T Consensus        80 p~~~h~~~~~~-----al~-aGk~V~~EK  102 (362)
T 1ydw_A           80 PTSLHVEWAIK-----AAE-KGKHILLEK  102 (362)
T ss_dssp             CGGGHHHHHHH-----HHT-TTCEEEECS
T ss_pred             ChHHHHHHHHH-----HHH-CCCeEEEec
Confidence            87777665542     211 222377777

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=93.98  E-value=0.053  Score=51.73  Aligned_cols=40  Identities=25%  Similarity=0.292  Sum_probs=31.7

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      ..+++|.+||.|+ ||.|++++..|++.|++|++++|+.++
T Consensus         5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   45 (257)
T 3tl3_A            5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGED   45 (257)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHH
T ss_pred             ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHH
Confidence            4567899999987 789999999999999999999996544

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=93.98  E-value=0.1  Score=52.43  Aligned_cols=45  Identities=24%  Similarity=0.226  Sum_probs=38.4

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|.+|||+|+|++|.+++..++..|+ +|++++++.+|.+ +++.++
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~-~~~~lG  211 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCD-IALEYG  211 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHH-HHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH-HHHHhC
Confidence            47889999999999999998899999 8999999988764 555555

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=93.97  E-value=0.079  Score=53.06  Aligned_cols=48  Identities=15%  Similarity=0.257  Sum_probs=42.3

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAK-GA-RVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~-g~-~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+++++|||.|+ |+.|++++..|.+. |+ +|++++|+..+.+.+.+.+.
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~   68 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN   68 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc
Confidence            367899999996 88999999999998 98 99999999999888877654

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=93.90  E-value=0.24  Score=51.46  Aligned_cols=94  Identities=14%  Similarity=0.035  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHh-CCCeEE-EEeC----------ChHHHHHHH
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA-KGARVV-IANR----------TYGESLTFL  421 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~-~g~~i~-v~~R----------~~~~a~~la  421 (493)
                      +.|.+.++++.+...       +.++++++++|.|.|.+|+.++..|.+ .|++|+ |.++          +.+...++.
T Consensus       189 g~Gv~~~~~~~~~~~-------g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~  261 (415)
T 2tmg_A          189 GRGVKVCAGLAMDVL-------GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYK  261 (415)
T ss_dssp             HHHHHHHHHHHHHHT-------TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-------CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHH
Confidence            677777777665431       257889999999999999999999998 999655 7777          777777777


Q ss_pred             HHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          422 RLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       422 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      +..+..    ..++....+ +.++-|..+.+|++|+..
T Consensus       262 ~~~g~l----~~y~~a~~~-~~~eil~~~~DIliP~A~  294 (415)
T 2tmg_A          262 KEHGTV----VTYPKGERI-TNEELLELDVDILVPAAL  294 (415)
T ss_dssp             HHSSCS----TTCSSSEEE-CHHHHTTCSCSEEEECSS
T ss_pred             HhhCCc----ccCCCceEc-CchhhhcCCCcEEEecCC
Confidence            653311    111112222 233567788899998874

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=93.87  E-value=0.1  Score=52.07  Aligned_cols=77  Identities=12%  Similarity=-0.092  Sum_probs=53.6

Q ss_pred             CEEEEEecchHHHHHHHHHH-hC-CCe-EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccC-CceEEEEec
Q 011136          382 KLFVVIGAGGAGKALAYGAK-AK-GAR-VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWH-LKFFIAANI  457 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~-~~-g~~-i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~i~~n~  457 (493)
                      .++.|||+|.+|+..+.+|. .. |++ +.|++|+.++++++++.++..          .+..+.++-.. ++.++++-+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~----------~~~~~~~~~l~~~~~D~V~i~   78 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVE----------TTYTNYKDMIDTENIDAIFIV   78 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCS----------EEESCHHHHHTTSCCSEEEEC
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCC----------cccCCHHHHhcCCCCCEEEEe
Confidence            48999999999999999988 54 566 578999999999988876531          11122222111 356788888


Q ss_pred             cccCCchhhHh
Q 011136          458 IHLGNHLEWVT  468 (493)
Q Consensus       458 tplG~~~~~~~  468 (493)
                      ||-..+.+...
T Consensus        79 tp~~~h~~~~~   89 (346)
T 3cea_A           79 APTPFHPEMTI   89 (346)
T ss_dssp             SCGGGHHHHHH
T ss_pred             CChHhHHHHHH
Confidence            88776655553

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=93.86  E-value=0.061  Score=57.75  Aligned_cols=50  Identities=14%  Similarity=0.161  Sum_probs=41.1

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh-------------------HHHHHHHHHhhhhh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY-------------------GESLTFLRLMSWLL  428 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~-------------------~~a~~la~~~~~~~  428 (493)
                      +++.+|+|+|+||.|..++..|+..|+ +|+|++.+.                   .||+.+++.+...+
T Consensus        30 L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lN   99 (531)
T 1tt5_A           30 LESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN   99 (531)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTC
T ss_pred             HhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhC
Confidence            446799999999999999999999999 999998543                   46777777666554

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=93.85  E-value=0.069  Score=53.97  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=38.2

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh---HHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY---GESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~---~~a~~la~~~~  425 (493)
                      +|++|+|+|+||+|.+++..++..|++|++++|+.   ++. ++++.++
T Consensus       180 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~-~~~~~~g  227 (366)
T 2cdc_A          180 NCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQ-TVIEETK  227 (366)
T ss_dssp             TTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHH-HHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHH-HHHHHhC
Confidence            38999999999999999999999999999999998   776 4445554

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.85  E-value=0.1  Score=53.49  Aligned_cols=45  Identities=22%  Similarity=0.325  Sum_probs=38.7

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|.+|||+|+|++|.+++..++..|+ +|+++.++.+|.+ +++.++
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~-~~~~lG  258 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRN-LAKELG  258 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHH-HHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH-HHHHcC
Confidence            47899999999999999999999999 9999999988864 556665

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=93.83  E-value=0.078  Score=47.91  Aligned_cols=37  Identities=24%  Similarity=0.246  Sum_probs=33.5

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      +++++|.|+ |+.|++++..|.+.|++|+++.|+.++.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~   40 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL   40 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhc
Confidence            368999998 9999999999999999999999997664

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=93.82  E-value=0.84  Score=44.89  Aligned_cols=148  Identities=18%  Similarity=0.220  Sum_probs=92.4

Q ss_pred             EeecCCCHHHHHHHHHhhhhcCCCEEEEEecCC-CCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH---HH
Q 011136           28 VPIMGESVDKMVVDMGKANASGADLVEIRLDGL-KNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER---VD  102 (493)
Q Consensus        28 v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l-~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~---~~  102 (493)
                      +=+...+++++..    +.+.|||.|||+-++. ..+.| ...++.+++...+|+-+-+|+  .||.|--++++.   .+
T Consensus        42 lEvc~~s~~~a~~----A~~gGAdRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRP--RgGdF~Ys~~E~~~M~~  115 (287)
T 3iwp_A           42 MEVCVDSVESAVN----AERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRP--RGGDFLYSDREIEVMKA  115 (287)
T ss_dssp             EEEEESSHHHHHH----HHHHTCSEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCS--SSSCSCCCHHHHHHHHH
T ss_pred             EEEEeCCHHHHHH----HHHhCCCEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEec--CCCCcccCHHHHHHHHH
Confidence            3445566766554    3467999999995443 23344 235666777778999999996  456666665443   34


Q ss_pred             HHHHHHHhCCcEEEEEc-----ccccchhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeec
Q 011136          103 VLRLAMELGADYIDVEL-----QVAREFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTA  176 (493)
Q Consensus       103 ll~~~l~~~~dyIDIEl-----~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~el~~~~~~~~~~gaDIvKia~~a  176 (493)
                      -++.+.+.|+|.|-+=.     ..+.+..++++.. .++..  +++|- |+.+++   ..+-++.+.++|+|-|=-....
T Consensus       116 dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~-a~~l~--vTFHRAFD~~~d---~~~Ale~Li~lGvdrILTSG~~  189 (287)
T 3iwp_A          116 DIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAI-CRPLP--VTFHRAFDMVHD---PMAALETLLTLGFERVLTSGCD  189 (287)
T ss_dssp             HHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHH-HTTSC--EEECGGGGGCSC---HHHHHHHHHHHTCSEEEECTTS
T ss_pred             HHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHH-cCCCc--EEEECchhccCC---HHHHHHHHHHcCCCEEECCCCC
Confidence            46677788999887742     2344456666643 23344  46676 777775   3556667777788876555544


Q ss_pred             CCHhHHHHHHH
Q 011136          177 LDITDVARVFQ  187 (493)
Q Consensus       177 ~s~~D~~~l~~  187 (493)
                      .+..+.+..++
T Consensus       190 ~~a~~Gl~~Lk  200 (287)
T 3iwp_A          190 SSALEGLPLIK  200 (287)
T ss_dssp             SSTTTTHHHHH
T ss_pred             CChHHhHHHHH
Confidence            44455555444

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=93.78  E-value=0.049  Score=54.77  Aligned_cols=32  Identities=38%  Similarity=0.534  Sum_probs=29.9

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      +|+|||+|.+|.++|..|++.|++|+|+.|+.
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~   34 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS   34 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            79999999999999999999999999998753

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=93.73  E-value=0.4  Score=45.65  Aligned_cols=112  Identities=12%  Similarity=0.170  Sum_probs=70.9

Q ss_pred             CCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe-cC--CCCCCc-hhHHHHHHhhC-CCcEEEEeccCCCCCCC
Q 011136           19 MRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRL-DG--LKNFNP-RENIKTLIKES-PVPTLFTYRPIWEGGQY   93 (493)
Q Consensus        19 ~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl-D~--l~~~~~-~~~l~~l~~~~-~~PiI~T~R~~~eGG~~   93 (493)
                      |...+++|+-+|..-|..++.++++.+.+.|+|.+.+++ |-  -+++.- .+.++.+|+.+ +.|+.+++-...     
T Consensus         1 ~~~~~~~i~pSila~D~~~l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G~~~v~~lr~~~p~~~~dvhLmv~d-----   75 (227)
T 1tqx_A            1 MGTLKAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEY-----   75 (227)
T ss_dssp             ---CCCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSC-----
T ss_pred             CCCCCCeEEeehhcCChhhHHHHHHHHHHcCCCEEEEEEEeCCcCcchhcCHHHHHHHHHhCCCCcEEEEEEEcC-----
Confidence            456678999999999999999999998888999999987 31  123322 35788888877 899999987632     


Q ss_pred             CCCHHHHHHHHHHHHHhCCcEEEEEccccc-chhHHHh---hcCCCCcEEEEEc
Q 011136           94 DGDENERVDVLRLAMELGADYIDVELQVAR-EFNDSIR---GKKPEKCKVIVSS  143 (493)
Q Consensus        94 ~~~~~~~~~ll~~~l~~~~dyIDIEl~~~~-~~~~~l~---~~~~~~~kiI~S~  143 (493)
                         ++.|.+.   ..+  +|++.+=..... ...+.+.   ..++.+.|+-++.
T Consensus        76 ---p~~~i~~---~~~--Ad~itvH~ea~~~~~~~~i~~~~~i~~~G~k~gval  121 (227)
T 1tqx_A           76 ---PEKYVPL---LKT--SNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISI  121 (227)
T ss_dssp             ---GGGGGGG---CTT--SSEEEEEGGGGTTCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             ---HHHHHHH---HHh--CCEEEEeecCCccCHHHHHHHHHHHHHcCCeEEEEe
Confidence               2223221   122  677766554443 2222222   2234556666665

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=93.73  E-value=0.073  Score=51.58  Aligned_cols=46  Identities=17%  Similarity=0.180  Sum_probs=37.8

Q ss_pred             ccCCCEEEEEec---chHHHHHHHHHHhCCCeEEEEeCCh--HHHHHHHHH
Q 011136          378 ALAGKLFVVIGA---GGAGKALAYGAKAKGARVVIANRTY--GESLTFLRL  423 (493)
Q Consensus       378 ~l~~~~vlvlGa---GGaara~~~~L~~~g~~i~v~~R~~--~~a~~la~~  423 (493)
                      .+++|+++|.|+   +|.|++++..|++.|++|+++.|+.  +..+++.+.
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~   73 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAE   73 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGG
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHh
Confidence            467899999995   3599999999999999999999987  555555443

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=93.72  E-value=0.086  Score=49.68  Aligned_cols=36  Identities=39%  Similarity=0.517  Sum_probs=33.0

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      +|+++|.|+ ||.|++++..|++.|++|++++|+.++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~   38 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE   38 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            578999987 789999999999999999999999876

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=93.69  E-value=0.056  Score=51.79  Aligned_cols=41  Identities=24%  Similarity=0.329  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      ..+.+|+++|.|+ ||.|++++..|++.|++|+++.|+.++.
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~   58 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP   58 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh
Confidence            4567899999988 7899999999999999999999986543

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=93.67  E-value=0.26  Score=48.94  Aligned_cols=78  Identities=15%  Similarity=0.046  Sum_probs=51.7

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLG  461 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG  461 (493)
                      ++.|+|+|.+|.++++.|+..|. +|++++++.++++..+.++...........+++.-.+. +.. .+.++++.+.+..
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~-~~aD~Vi~~ag~~   78 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDM-RGSDIVLVTAGIG   78 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGG-TTCSEEEECCSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHh-CCCCEEEEeCCCC
Confidence            47899999999999999988787 89999999999988777665432111111133331222 223 5566777665544


Q ss_pred             C
Q 011136          462 N  462 (493)
Q Consensus       462 ~  462 (493)
                      .
T Consensus        79 ~   79 (308)
T 2d4a_B           79 R   79 (308)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.64  E-value=0.097  Score=51.79  Aligned_cols=33  Identities=21%  Similarity=0.205  Sum_probs=30.4

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .+++|||+|.+|.+++..|++.|.+|++++|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            469999999999999999999999999999986

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=93.64  E-value=0.094  Score=54.56  Aligned_cols=96  Identities=18%  Similarity=0.143  Sum_probs=62.0

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEE-EEeC----------ChHHHHHHHH
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANR----------TYGESLTFLR  422 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~-v~~R----------~~~~a~~la~  422 (493)
                      +.|.+.++++.+..       .+.+++|++++|.|.|.+|..++..|.+.|++|+ |.++          +.+...++.+
T Consensus       190 g~Gv~~~~~~~~~~-------~g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~  262 (421)
T 1v9l_A          190 GFGVAVATREMAKK-------LWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKG  262 (421)
T ss_dssp             HHHHHHHHHHHHHH-------HHSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTT
T ss_pred             HHHHHHHHHHHHHh-------cCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHH
Confidence            57777777665543       1257889999999999999999999999999665 8877          5676666654


Q ss_pred             Hhhh---hhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          423 LMSW---LLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       423 ~~~~---~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      ..+.   ..++.. .. -..+.+.++.|..+.+|++||-
T Consensus       263 ~~g~~~v~~y~~~-~~-~~~~~~~~~~~~~~~Dil~P~A  299 (421)
T 1v9l_A          263 LTGPALVELFTTK-DN-AEFVKNPDAIFKLDVDIFVPAA  299 (421)
T ss_dssp             SCHHHHHHHHHHT-SC-CCCCSSTTGGGGCCCSEEEECS
T ss_pred             hhCCccccccccc-cC-ceEeCCchhhhcCCccEEEecC
Confidence            3221   111100 00 0111122456777888998765

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=93.63  E-value=0.061  Score=51.77  Aligned_cols=39  Identities=28%  Similarity=0.348  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   44 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG   44 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc
Confidence            467899999987 789999999999999999999998654

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=93.61  E-value=0.086  Score=50.28  Aligned_cols=45  Identities=20%  Similarity=0.187  Sum_probs=39.2

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKG--ARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g--~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|.++|.|+ ||.|++++..|++.|  +.|++++|+.++.+++++.++
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~   49 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG   49 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHG
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhC
Confidence            578999987 789999999999886  589999999999998887664

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=93.60  E-value=0.073  Score=50.60  Aligned_cols=38  Identities=32%  Similarity=0.390  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      ++++|+++|.|+ ||.|++++..|++.|++|++++|+.+
T Consensus         4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   42 (250)
T 2fwm_X            4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT   42 (250)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchh
Confidence            366899999987 78999999999999999999999864

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=93.57  E-value=0.27  Score=49.77  Aligned_cols=74  Identities=8%  Similarity=-0.061  Sum_probs=52.0

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      .+++|.|+|+ |.+|.++++.+...|.  +|++++++.++++..+.++....+.   ..++..-.+..+.. .+.++++-
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~---~~~i~~t~d~~~al-~dADvVvi   82 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFE---GLNLTFTSDIKEAL-TDAKYIVS   82 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCT---TCCCEEESCHHHHH-TTEEEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCC---CCceEEcCCHHHHh-CCCCEEEE
Confidence            4679999998 9999999999999994  8999999999998877776654321   12344333333322 45555554


Q ss_pred             c
Q 011136          457 I  457 (493)
Q Consensus       457 ~  457 (493)
                      +
T Consensus        83 t   83 (343)
T 3fi9_A           83 S   83 (343)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=93.55  E-value=0.092  Score=50.48  Aligned_cols=48  Identities=23%  Similarity=0.323  Sum_probs=37.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEe-CChHHHHHHHHHhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYGESLTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~-R~~~~a~~la~~~~  425 (493)
                      .+.+|.++|.|+ ||.|++++..|++.|++|++++ |+.++.+++.+...
T Consensus        22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~   71 (269)
T 3gk3_A           22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHER   71 (269)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHH
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHH
Confidence            356888999987 8899999999999999988887 66666666655443

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=93.52  E-value=0.084  Score=53.57  Aligned_cols=46  Identities=22%  Similarity=0.289  Sum_probs=39.3

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .|.+|||+|+|++|.+++..++..|+ +|+++.++.++.+ +++.++.
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~-~a~~lGa  228 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRR-LAEEVGA  228 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHH-HHHHHTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH-HHHHcCC
Confidence            47899999999999999999999999 8999999988865 6666653

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=93.52  E-value=0.83  Score=43.33  Aligned_cols=140  Identities=16%  Similarity=0.166  Sum_probs=87.2

Q ss_pred             HhhhhcCCCEEEEEecCCC-CCCch-hHHHHHH---hhCCCcEEEEeccCCCCCCCCCCHHHHHH---HHHHHHHhCCcE
Q 011136           43 GKANASGADLVEIRLDGLK-NFNPR-ENIKTLI---KESPVPTLFTYRPIWEGGQYDGDENERVD---VLRLAMELGADY  114 (493)
Q Consensus        43 ~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~---ll~~~l~~~~dy  114 (493)
                      ..+.+.|||-|||.-++-. .+.|+ -.++.++   +...+|+.+-+|+  .||-|--++++...   -++.+.++|+|-
T Consensus        15 ~~A~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~~~~ipV~vMIRP--R~GdF~Ys~~E~~~M~~Di~~~~~~GadG   92 (224)
T 2bdq_A           15 TRLDKAIISRVELCDNLAVGGTTPSYGVIKEANQYLHEKGISVAVMIRP--RGGNFVYNDLELRIMEEDILRAVELESDA   92 (224)
T ss_dssp             GGCCTTTCCEEEEEBCGGGTCBCCCHHHHHHHHHHHHHTTCEEEEECCS--SSSCSCCCHHHHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHcCCCEEEEcCCcccCCcCCCHHHHHHHHHhhhhcCCceEEEECC--CCCCCcCCHHHHHHHHHHHHHHHHcCCCE
Confidence            3455779999999987643 34442 2455566   6789999999995  45656666654433   355667788887


Q ss_pred             EEE-----EcccccchhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCC--HhHHHHHH
Q 011136          115 IDV-----ELQVAREFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTALD--ITDVARVF  186 (493)
Q Consensus       115 IDI-----El~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s--~~D~~~l~  186 (493)
                      |=+     |-..+.+..+++... .++..  +.+|- |+.+|. .+..+-++.+.++|+|=|==..-+.+  ..|.+..+
T Consensus        93 vV~G~Lt~dg~iD~~~~~~Li~~-a~~~~--vTFHRAFD~~~~-~d~~~ale~L~~lGv~rILTSG~~~~~~a~~g~~~L  168 (224)
T 2bdq_A           93 LVLGILTSNNHIDTEAIEQLLPA-TQGLP--LVFHMAFDVIPK-SDQKKSIDQLVALGFTRILLHGSSNGEPIIENIKHI  168 (224)
T ss_dssp             EEECCBCTTSSBCHHHHHHHHHH-HTTCC--EEECGGGGGSCT-TTHHHHHHHHHHTTCCEEEECSCSSCCCGGGGHHHH
T ss_pred             EEEeeECCCCCcCHHHHHHHHHH-hCCCe--EEEECchhccCC-cCHHHHHHHHHHcCCCEEECCCCCCCCcHHHHHHHH
Confidence            755     223345566777643 23445  45565 877742 24566688888899765443333344  66666555


Q ss_pred             HH
Q 011136          187 QI  188 (493)
Q Consensus       187 ~~  188 (493)
                      +-
T Consensus       169 ~~  170 (224)
T 2bdq_A          169 KA  170 (224)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=93.52  E-value=0.095  Score=53.03  Aligned_cols=46  Identities=26%  Similarity=0.367  Sum_probs=39.8

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|++|+|+|+|++|.+++..++..|++|+++.|+.++.+.+.+.++
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lG  232 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFG  232 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcC
Confidence            4789999999999999999999999999999999888766654554

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=93.51  E-value=0.064  Score=50.64  Aligned_cols=38  Identities=18%  Similarity=0.184  Sum_probs=33.4

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      .++|+++|.|+ ||.|++++..|++.|++|++++|+.++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   43 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   43 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhh
Confidence            35789999987 789999999999999999999998754

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=93.50  E-value=0.053  Score=51.53  Aligned_cols=49  Identities=20%  Similarity=0.334  Sum_probs=37.5

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEe-CChHHHHHHHHHhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN-RTYGESLTFLRLMS  425 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~-R~~~~a~~la~~~~  425 (493)
                      ...++|++||.|+ ||.|++++..|++.|++|++.. |+.++.+++.+.+.
T Consensus         9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~   59 (256)
T 3ezl_A            9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQK   59 (256)
T ss_dssp             ----CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            3467889999987 7899999999999999887766 77777777666554

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.49  E-value=0.094  Score=52.36  Aligned_cols=42  Identities=17%  Similarity=0.264  Sum_probs=36.6

Q ss_pred             CCCEEEEEecc-hHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          380 AGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       380 ~~~~vlvlGaG-Gaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      .|++|||+|+| ++|.+++..++..|++|+++.|+.++.+.+.
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~  186 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELL  186 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            47899999997 8999999988889999999999988876554

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=93.49  E-value=0.055  Score=51.73  Aligned_cols=47  Identities=32%  Similarity=0.444  Sum_probs=37.7

Q ss_pred             ccCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCChHHH-HHHHHHh
Q 011136          378 ALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYGES-LTFLRLM  424 (493)
Q Consensus       378 ~l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~~~a-~~la~~~  424 (493)
                      .+++|+++|.|++   |.|++++..|++.|++|+++.|+.++. ++..+.+
T Consensus        17 ~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l   67 (267)
T 3gdg_A           17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKEL   67 (267)
T ss_dssp             CCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHH
T ss_pred             CcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHH
Confidence            4678999999975   899999999999999999988875443 4444444

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.46  E-value=0.079  Score=52.86  Aligned_cols=46  Identities=22%  Similarity=0.178  Sum_probs=39.6

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|++|||.|+ ||.|.+++..++..|++|+++.|+.++.+.+.+.++
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g  201 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFG  201 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC
Confidence            4789999997 999999999999999999999999988776654444

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=93.44  E-value=0.11  Score=51.69  Aligned_cols=89  Identities=12%  Similarity=-0.009  Sum_probs=60.5

Q ss_pred             EEEEEecchHHHHHHHHHHhCC---Ce-EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccccc-CCceEEEEec
Q 011136          383 LFVVIGAGGAGKALAYGAKAKG---AR-VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTW-HLKFFIAANI  457 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g---~~-i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~i~~n~  457 (493)
                      ++.|||+|.+|+..+.+|...+   ++ +.|++|+.++++++++.++...          +..+.++-. .++.++++-+
T Consensus         4 rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~----------~~~~~~~ll~~~~vD~V~i~   73 (334)
T 3ohs_X            4 RWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPK----------AYGSYEELAKDPNVEVAYVG   73 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSC----------EESSHHHHHHCTTCCEEEEC
T ss_pred             EEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCc----------ccCCHHHHhcCCCCCEEEEC
Confidence            7899999999999988887764   33 6689999999999999876421          112222111 1356788888


Q ss_pred             cccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          458 IHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       458 tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ||-..|.+....     ... ..-.|+.||
T Consensus        74 tp~~~H~~~~~~-----al~-~GkhVl~EK   97 (334)
T 3ohs_X           74 TQHPQHKAAVML-----CLA-AGKAVLCEK   97 (334)
T ss_dssp             CCGGGHHHHHHH-----HHH-TTCEEEEES
T ss_pred             CCcHHHHHHHHH-----HHh-cCCEEEEEC
Confidence            888888766542     222 333477776

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=93.43  E-value=0.11  Score=48.43  Aligned_cols=41  Identities=17%  Similarity=0.032  Sum_probs=35.5

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhC--CCeEEEEeCChHHHHHH
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAK--GARVVIANRTYGESLTF  420 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~--g~~i~v~~R~~~~a~~l  420 (493)
                      .+++++|.|+ |+.|++++..|.+.  |++|+++.|+.++.+.+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~   46 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI   46 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc
Confidence            3689999996 88999999999999  67999999998776544

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=93.43  E-value=0.053  Score=54.59  Aligned_cols=45  Identities=22%  Similarity=0.285  Sum_probs=38.2

Q ss_pred             CCCEEEEE-ecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVI-GAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvl-GaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|++|||+ |+||+|.+++..++..|++|+++.|+.++.+.+. .++
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~lG  212 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE-RLG  212 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHT
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcC
Confidence            47899999 5799999999999999999999999998876554 343

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.38  E-value=0.055  Score=50.87  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=33.0

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      ++|++||.|+ ||.|++++..|++.|++|++++|+.++
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~   39 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   39 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccc
Confidence            3678999987 789999999999999999999998765

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=93.34  E-value=0.048  Score=52.67  Aligned_cols=40  Identities=40%  Similarity=0.640  Sum_probs=34.8

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++.
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~   65 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGI   65 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            467899999988 7899999999999999999999986553

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=93.33  E-value=0.015  Score=56.77  Aligned_cols=40  Identities=18%  Similarity=0.180  Sum_probs=36.2

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      .++.|||+|.+|++++..|.+.|++|++++ +.++++.+.+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~   43 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLS   43 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHT
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHH
Confidence            479999999999999999999999999999 8888887765

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.31  E-value=0.11  Score=51.93  Aligned_cols=45  Identities=24%  Similarity=0.280  Sum_probs=38.6

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|++|+|+|+||+|.+++..++..|++|+++.|+.++.+.+ +.++
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~lG  208 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA-KELG  208 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHCC
Confidence            37899999999999999999999999999999998887654 4444

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=93.29  E-value=2.1  Score=41.33  Aligned_cols=125  Identities=19%  Similarity=0.166  Sum_probs=77.1

Q ss_pred             HHHHhhhhcCCCEEEEEecCCCCCCch---hHHHHHH---hhCCCcEEEEeccCCCCCCCC--CCHHHHHHHHHHHHHhC
Q 011136           40 VDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLI---KESPVPTLFTYRPIWEGGQYD--GDENERVDVLRLAMELG  111 (493)
Q Consensus        40 ~~~~~~~~~~aD~vElRlD~l~~~~~~---~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~~~~~~ll~~~l~~~  111 (493)
                      .+++++++.|+|.|-+|+.+ .+.+..   +.++.++   +...+|+|+....  .|....  .++++..+..+.+.+.|
T Consensus        96 ~~ve~Ai~~Ga~~v~~~~ni-g~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~--~G~~~~~~~s~~~i~~a~~~a~~~G  172 (263)
T 1w8s_A           96 CSVEEAVSLGASAVGYTIYP-GSGFEWKMFEELARIKRDAVKFDLPLVVESFP--RGGKVVNETAPEIVAYAARIALELG  172 (263)
T ss_dssp             SCHHHHHHTTCSEEEEEECT-TSTTHHHHHHHHHHHHHHHHHHTCCEEEEECC--CSTTCCCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCEEEEEEec-CCcCHHHHHHHHHHHHHHHHHcCCeEEEEeeC--CCCccccCCCHHHHHHHHHHHHHcC
Confidence            44556667899999999943 322222   2233333   2347899988654  343321  14555555567888999


Q ss_pred             CcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCC--CHHHHHHHHHHHHHcCCCEEEE
Q 011136          112 ADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP--SVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       112 ~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp--~~~el~~~~~~~~~~gaDIvKi  172 (493)
                      +|||=+......+.++.+...- +.++|++|=    +-.  +.++..+.+..+.+.||+-+=+
T Consensus       173 AD~vkt~~~~~~e~~~~~~~~~-~~~pV~asG----Gi~~~~~~~~l~~i~~~~~aGA~Gvsv  230 (263)
T 1w8s_A          173 ADAMKIKYTGDPKTFSWAVKVA-GKVPVLMSG----GPKTKTEEDFLKQVEGVLEAGALGIAV  230 (263)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHT-TTSCEEEEC----CSCCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEcCCCCHHHHHHHHHhC-CCCeEEEEe----CCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            9999998643345566665432 233565552    222  5678888998888999985443

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=93.27  E-value=0.042  Score=61.77  Aligned_cols=75  Identities=19%  Similarity=0.141  Sum_probs=52.3

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhhhcccccceEEE
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLLLNTLLFDSVIV  439 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~~~~~~~~~~~v  439 (493)
                      ++.+|+|+|+||.|..++..|+..|+ +|+|++.+                   ..|++.+++.+...+..    -+|..
T Consensus       410 ~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~np~----~~v~~  485 (805)
T 2nvu_B          410 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN----CNVVP  485 (805)
T ss_dssp             HTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTT----CEEEE
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHHHCCC----CEEEE
Confidence            57799999999999999999999999 99998864                   25787788777765521    12222


Q ss_pred             Eee-cc---cccCCceEEEEecc
Q 011136          440 IRI-LL---FTWHLKFFIAANII  458 (493)
Q Consensus       440 ~~~-l~---~~~~~~~~i~~n~t  458 (493)
                      ... +.   ..+-.+++++++++
T Consensus       486 ~~~~~~~~~~~~~~~~d~vv~~~  508 (805)
T 2nvu_B          486 HFNKIQDFNDTFYRQFHIIVCGL  508 (805)
T ss_dssp             EESCGGGSCHHHHHTCSEEEECC
T ss_pred             EeccccccHHHHHhcCCEEEECC
Confidence            221 11   11114578888775

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=93.26  E-value=0.14  Score=53.37  Aligned_cols=94  Identities=17%  Similarity=0.179  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEE-EEeCCh---------------HHH
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANRTY---------------GES  417 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~-v~~R~~---------------~~a  417 (493)
                      +.|.+.+++..+..       .+.++++++|+|.|.|.+|+.++..|.+.|++|+ |.+++.               +..
T Consensus       192 g~Gv~~~~~~~~~~-------~g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l  264 (421)
T 2yfq_A          192 GFGVAVVVRESAKR-------FGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKEL  264 (421)
T ss_dssp             HHHHHHHHHHHHHH-------TTCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHH
T ss_pred             HHHHHHHHHHHHHh-------cCCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHH
Confidence            67777777765543       1256889999999999999999999999999655 888883               566


Q ss_pred             HHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          418 LTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       418 ~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      .++.+..+...    .++....+ +.++.|..+.+|++||..
T Consensus       265 ~~~~~~~g~i~----~~~~a~~i-~~~~~~~~~~DIliP~A~  301 (421)
T 2yfq_A          265 LAYKEANKTLI----GFPGAERI-TDEEFWTKEYDIIVPAAL  301 (421)
T ss_dssp             HHHHHHHCC--------------------------CEEECSC
T ss_pred             HHHHHhcCCcc----cCCCceEe-CccchhcCCccEEEEcCC
Confidence            66655432110    11111122 123557778899998864

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=93.22  E-value=0.052  Score=51.76  Aligned_cols=41  Identities=12%  Similarity=0.099  Sum_probs=36.3

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      |++||.|+ ||.|++++..|++.|++|++++|+.++.+.+++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   43 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA   43 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            56888887 789999999999999999999999988877765

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=93.22  E-value=0.061  Score=53.56  Aligned_cols=32  Identities=22%  Similarity=0.325  Sum_probs=29.8

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .|+|||+|.+|.++|+.|++.|++|+|+.|..
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~   37 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRP   37 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999854

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.18  E-value=0.12  Score=51.60  Aligned_cols=45  Identities=33%  Similarity=0.405  Sum_probs=38.0

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|+++||+|+ ||+|++++..++..|++|+++.|+.++.+. ++.++
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~-~~~~g  214 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEEL-FRSIG  214 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHH-HHHTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHH-HHHcC
Confidence            4789999999 899999999999999999999999888744 44443

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.18  E-value=0.04  Score=56.04  Aligned_cols=45  Identities=27%  Similarity=0.351  Sum_probs=38.9

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|.+|||+|+|++|.+++..++..|+ +|+++.++.+|.+ +++.++
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~-~a~~lG  238 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYE-TAKKFG  238 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHH-HHHTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH-HHHHcC
Confidence            47899999999999999999999999 8999999998875 556555

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=93.16  E-value=5.1  Score=40.13  Aligned_cols=199  Identities=12%  Similarity=0.077  Sum_probs=116.9

Q ss_pred             CHHHHHHHHHhhhhcCCCEEEEE-------ecCCCC---CCchhHHHHHHhhC-CCcEEEE-eccCCCCCCCCCCHHHHH
Q 011136           34 SVDKMVVDMGKANASGADLVEIR-------LDGLKN---FNPRENIKTLIKES-PVPTLFT-YRPIWEGGQYDGDENERV  101 (493)
Q Consensus        34 ~~~e~~~~~~~~~~~~aD~vElR-------lD~l~~---~~~~~~l~~l~~~~-~~PiI~T-~R~~~eGG~~~~~~~~~~  101 (493)
                      +.++.++-++.+.+.|+|.||+=       .|....   .++.+.++.+++.. +.|+..- ++.     .  ..    .
T Consensus        28 ~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~-----~--~~----~   96 (345)
T 1nvm_A           28 TLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPG-----I--GS----V   96 (345)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBT-----T--BC----H
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCC-----c--cc----H
Confidence            45666666777777899999992       111101   13345666666543 4565543 431     1  11    2


Q ss_pred             HHHHHHHHhCCcEEEEEccccc-chhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--C
Q 011136          102 DVLRLAMELGADYIDVELQVAR-EFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA--L  177 (493)
Q Consensus       102 ~ll~~~l~~~~dyIDIEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a--~  177 (493)
                      +.++.+.+.|++.+-|=....+ +...+.. .+++.+..++.+.-+...+ +.+.+.++.+++.+.||+++-++=+.  .
T Consensus        97 ~~i~~a~~aGvd~v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~-~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~  175 (345)
T 1nvm_A           97 HDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMI-PAEKLAEQGKLMESYGATCIYMADSGGAM  175 (345)
T ss_dssp             HHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSS-CHHHHHHHHHHHHHHTCSEEEEECTTCCC
T ss_pred             HHHHHHHhCCcCEEEEEEeccHHHHHHHHHHHHHHCCCEEEEEEEeCCCC-CHHHHHHHHHHHHHCCCCEEEECCCcCcc
Confidence            4677888899998887544321 1222222 3344577888887654333 45679999999999999999888443  4


Q ss_pred             CHhHHHHHHHHhcc-C--CCCEEEE--ecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136          178 DITDVARVFQITVH-S--QVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (493)
Q Consensus       178 s~~D~~~l~~~~~~-~--~~PlIa~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~  245 (493)
                      ++.++.++++.+++ .  +.|+-.-  +.--+|...-+..-..|....=+++..- ....||++++++--.++
T Consensus       176 ~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aGa~~vd~tv~Gl-G~~aGN~~le~lv~~L~  247 (345)
T 1nvm_A          176 SMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGM-GAGAGNAPLEVFIAVAE  247 (345)
T ss_dssp             CHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGC-SSTTCBCBHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcCCCEEEecchhc-cCCccCcCHHHHHHHHH
Confidence            68898888876544 3  4554332  2222333444444344533222333321 23579999888776555

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=93.09  E-value=0.63  Score=44.30  Aligned_cols=108  Identities=17%  Similarity=0.099  Sum_probs=74.1

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe-c--CCCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRL-D--GLKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER  100 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl-D--~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~  100 (493)
                      +||-+|..-|...+.++++.+ +.|+|.+++++ |  +.+++.- .+.++.+|+.++.|+.+++-...        ++.|
T Consensus         2 ~i~pSila~D~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~d--------p~~~   72 (231)
T 3ctl_A            2 KISPSLMCMDLLKFKEQIEFI-DSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTR--------PQDY   72 (231)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHH-HTTCSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESSC--------GGGT
T ss_pred             eEEeehhhCChhhHHHHHHHH-HcCCCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEecC--------HHHH
Confidence            588899999999999999998 89999999976 4  1233321 35688888777899999998631        2233


Q ss_pred             HHHHHHHHHhCCcEEEEEccc-ccchhHHHhhcCCCCcEEEEEcc
Q 011136          101 VDVLRLAMELGADYIDVELQV-AREFNDSIRGKKPEKCKVIVSSH  144 (493)
Q Consensus       101 ~~ll~~~l~~~~dyIDIEl~~-~~~~~~~l~~~~~~~~kiI~S~H  144 (493)
                         ++.+.+.|+|+|.+=... .....+.+...++.+.|+.++.+
T Consensus        73 ---i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~ln  114 (231)
T 3ctl_A           73 ---IAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILN  114 (231)
T ss_dssp             ---HHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEEC
T ss_pred             ---HHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEE
Confidence               356677899999876554 32222222222345777777763

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=93.06  E-value=0.12  Score=49.21  Aligned_cols=47  Identities=17%  Similarity=0.120  Sum_probs=35.9

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-YGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~-~~~a~~la~~~~  425 (493)
                      +.+|+++|.|+ ||.|++++..|++.|++|+++.|+ .+..+.+.+.+.
T Consensus         5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~   53 (264)
T 3i4f_A            5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYK   53 (264)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTG
T ss_pred             cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHH
Confidence            44789999987 789999999999999998888665 444555555443

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=93.05  E-value=0.049  Score=53.00  Aligned_cols=43  Identities=12%  Similarity=0.193  Sum_probs=34.2

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeE-EEEeCChHHHHHHHHHhhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARV-VIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i-~v~~R~~~~a~~la~~~~~  426 (493)
                      ++.|||+|.+|.+++..|.+. ++| .+++|+.++++++++.++.
T Consensus         4 ~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~   47 (276)
T 2i76_A            4 VLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG   47 (276)
T ss_dssp             CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC
T ss_pred             eEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC
Confidence            588999999999999999877 888 5999999999999876653

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=93.04  E-value=0.14  Score=53.74  Aligned_cols=40  Identities=20%  Similarity=0.161  Sum_probs=36.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhC--CCeEEEEeCChHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAK--GARVVIANRTYGESLTFL  421 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~--g~~i~v~~R~~~~a~~la  421 (493)
                      .++.|||+|-+|.+++..|++.  |++|++++|+.++.+.+.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~   47 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWN   47 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHT
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHh
Confidence            4799999999999999999998  679999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	493
d1gqna_	252	c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase	8e-72
d1sfla_	236	c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase	2e-70
d1p77a2	101	c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE	1e-27
d1vi2a2	102	c.58.1.5 (A:5-106) Putative shikimate dehydrogenas	2e-27
d1nyta2	101	c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE	3e-26
d1nvta2	110	c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE	1e-25
d1npya2	102	c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like	1e-24
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	0.003

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} Length = 252

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

 Score =  226 bits (577), Expect = 8e-72
 Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 14/234 (5%)

Query: 24  TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
             I V +MG  ++ +  +      +  D++E R+D   +    +++ T  +        +
Sbjct: 16  PKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDI 75

Query: 79  PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVA-REFNDSIRGKKPEK 136
           P LFT+R   EGG+        + + R A++ G  D ID+EL     +   ++       
Sbjct: 76  PLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHN 135

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH----- 191
             V++S+H++  TPS E++ + + ++QA GADI K A       DV  +   T+      
Sbjct: 136 VYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHY 195

Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
           +  P+I + M + G+ISR+    FG   TFG ++    SAPGQ  + DL  +  
Sbjct: 196 ADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQA--SAPGQIAVNDLRSVLM 247

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]} Length = 236

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

 Score =  222 bits (566), Expect = 2e-70
 Identities = 57/234 (24%), Positives = 102/234 (43%), Gaps = 15/234 (6%)

Query: 26  ICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK----ESPVPT 80
           +   I  + S+++ ++          D++E+R+D  +N    +  + + K    +     
Sbjct: 4   VVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKL 63

Query: 81  LFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREFNDS---IRGKKPEK 136
           L TYR   +GG      +  ++++  LA   G D ID+E Q   +       I   +   
Sbjct: 64  LVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYN 123

Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH----S 192
            +VI+S HN++ TP +++L  +  ++Q    + VK A    +  DV  + Q         
Sbjct: 124 KEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTM 183

Query: 193 QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
              ++G+ M + GLISR     FGG LT+G +      APGQ  + DL      
Sbjct: 184 DCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEP--QAPGQIDVTDLKAQVTL 235

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

 Score =  104 bits (260), Expect = 1e-27
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCT 311
            ++ + G P+  SKSP++ N+          ++  L D     +    +      G + T
Sbjct: 2   DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNT 352
            P KE A +  DE    AK   A N + +   DGKL+  NT
Sbjct: 62  SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNT 101

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

 Score =  103 bits (258), Expect = 2e-27
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSC 310
            ++ G++  P+ HS SP + N+A +  G    ++   VD        +   +    G   
Sbjct: 3   YELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGV 62

Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNT 352
           ++P+K+ A +  DE+   AK +GA+N I+    DG L GYNT
Sbjct: 63  SMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGYNT 102

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (250), Expect = 3e-26
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCT 311
           + + + G P+ HSKSP ++ +  + +     +  +L    D       + S    G + T
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61

Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNT 352
           +P KE A    DE+   A   GAVN ++R + DG+L G NT
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNT 101

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 110

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 98.6 bits (245), Expect = 1e-25
 Identities = 47/106 (44%), Positives = 60/106 (56%), Gaps = 4/106 (3%)

Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
           +   TKV G+IG PV HS SPI++N AFK  G N V+V   V  +++        +    
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66

Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNT 352
           GF+ TIPHK   +K  DE+D  A+ IGAVN I     DGK  GYNT
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNT 110

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

 Score = 95.8 bits (238), Expect = 1e-24
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 249 MGPDTKVF-GIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAG 307
           +  DT++   + G+P   +     +N  +  +G N ++      DI    +   +    G
Sbjct: 2   INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59

Query: 308 FSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNT 352
            + ++P KE  +   DE+   A++I +VN I+    +G L  YNT
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNT 102

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413
           ++ ++ G G  GK LA      G  +V+ +R 
Sbjct: 2   RVALLGGTGNLGKGLALRLATLGHEIVVGSRR 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	493
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	100.0
d1sfla_	236	Type I 3-dehydroquinate dehydratase {Staphylococcu	100.0
d1p77a2	101	Shikimate 5-dehydrogenase AroE {Haemophilus influe	99.97
d1vi2a2	102	Putative shikimate dehydrogenase YdiB {Escherichia	99.97
d1nyta2	101	Shikimate 5-dehydrogenase AroE {Escherichia coli [	99.97
d1nvta2	110	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	99.96
d1npya2	102	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.96
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	99.7
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.69
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	99.6
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	99.59
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	99.47
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.97
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.9
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.22
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.52
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.51
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.38
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.33
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.33
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.31
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.29
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.28
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.27
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.25
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.23
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.22
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.13
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.12
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.1
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.09
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.08
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.07
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.07
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.04
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.03
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.03
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.03
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.02
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.01
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.01
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.0
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.0
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.96
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.96
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.96
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.95
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.95
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.94
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.94
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.92
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.89
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.87
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.87
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.87
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.87
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.86
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.85
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.83
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.82
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.82
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.82
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.8
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.77
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	96.75
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.74
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.67
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.66
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.65
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.65
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.65
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.63
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.63
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.56
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.55
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.51
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.51
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.48
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.47
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.47
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.46
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.46
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.45
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.37
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.37
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.36
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.36
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.35
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.34
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.3
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.29
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.27
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.23
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.21
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.14
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.14
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.04
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.04
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.03
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.02
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.01
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.0
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.97
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.97
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.97
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.93
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.92
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.92
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.91
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.91
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.86
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	95.85
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.85
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.84
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	95.81
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.79
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.73
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.71
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.69
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.65
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	95.65
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.64
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.59
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.58
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.52
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	95.51
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.46
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.36
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.32
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.32
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	95.28
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.24
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.19
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.12
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.12
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.09
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.0
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.82
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.81
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.81
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.75
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.74
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.73
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.73
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.67
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	94.62
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.55
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	94.49
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	94.48
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	94.48
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.39
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.36
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.32
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	94.24
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.22
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.17
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.16
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	94.16
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	94.15
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	94.15
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	94.13
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	94.12
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.12
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.11
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.09
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.07
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	94.06
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	94.05
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	94.0
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.9
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.89
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	93.86
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.85
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.84
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	93.82
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.69
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.65
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.55
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.52
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.47
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	93.47
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	93.46
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	93.43
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	93.37
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.32
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	93.28
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.22
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	93.21
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	93.16
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.14
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	93.08
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	92.98
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	92.95
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	92.94
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	92.91
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	92.87
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	92.85
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	92.73
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.71
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	92.69
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.69
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	92.57
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	92.47
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	92.43
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.33
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.31
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	92.18
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.18
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	92.17
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.16
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.1
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.1
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	92.1
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	92.09
d1yx1a1	250	Hypothetical protein PA2260 {Pseudomonas aeruginos	92.03
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	92.0
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	91.99
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	91.93
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	91.87
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	91.86
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	91.76
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	91.6
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	91.55
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	91.44
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	91.35
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.28
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.18
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	91.15
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	91.01
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	90.86
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	90.82
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.69
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	90.63
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.44
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	90.43
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	90.39
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	90.26
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.21
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	90.14
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	90.06
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	89.99
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	89.91
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	89.87
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	89.85
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.84
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	89.71
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	89.68
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	89.68
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.47
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.34
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	89.17
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	89.16
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	89.12
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	88.95
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	88.95
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	88.86
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	88.82
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	88.81
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.8
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	88.79
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	88.7
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	88.54
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	88.44
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	88.42
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	88.04
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	87.96
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	87.9
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.78
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	87.71
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	87.15
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	86.99
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	86.97
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	86.85
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	86.78
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	86.71
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	86.56
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	86.55
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	86.33
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	86.28
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	86.25
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.12
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	85.97
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	85.94
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	85.88
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	85.58
d1o66a_	260	Ketopantoate hydroxymethyltransferase PanB {Neisse	85.49
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	85.43
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	85.36
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	85.05
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	84.97
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	84.55
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	84.55
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	84.42
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	84.11
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	84.03
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	83.96
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	83.9
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	83.85
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	83.67
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	83.24
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	83.16
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	82.78
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	82.72
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	82.7
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	82.37
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	82.03
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	81.82
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	81.7
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	81.5
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	81.32
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	81.19
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	80.95
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	80.88
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	80.7
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	80.37
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	80.13

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=100.00  E-value=9e-55  Score=426.40  Aligned_cols=233  Identities=26%  Similarity=0.417  Sum_probs=209.6

Q ss_pred             ccccccCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchh----HHHHHHhhC-CCcEEEEeccC
Q 011136           13 KLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRE----NIKTLIKES-PVPTLFTYRPI   87 (493)
Q Consensus        13 ~~~~~~~~~~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~----~l~~l~~~~-~~PiI~T~R~~   87 (493)
                      |+..-+++..+|+|||||++++.++++++++++.+.|||+||||+|+|.+..+.+    .++.+++.. ++|+|||+|++
T Consensus         5 ~v~~~~~g~g~pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~   84 (252)
T d1gqna_           5 TVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSA   84 (252)
T ss_dssp             EETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCSCTTCHHHHHHHHHHHHHHCTTSCEEEECCBG
T ss_pred             EECCEEecCCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEccccccCCHHHHHHHHHHHHHhcCCCCEEEEEech
Confidence            4455566788999999999999999999999988889999999999998765433    344555554 69999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHc
Q 011136           88 WEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQAS  165 (493)
Q Consensus        88 ~eGG~~~~~~~~~~~ll~~~l~~~-~dyIDIEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~  165 (493)
                      +|||.+.+++++|+++|+.++++| |||||||++..++.+.++.. +++.++++|+|||||++||+.+++.+++++|.++
T Consensus        85 ~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiEl~~~~~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~~~~~~m~~~  164 (252)
T d1gqna_          85 KEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQAL  164 (252)
T ss_dssp             GGTCSBCCCHHHHHHHHHHHHHHSCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHT
T ss_pred             hhCCCCCCCHHHHHHHHHHHHHcCCCceEeccccccHHHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999 99999999999887777763 4678999999999999999999999999999999


Q ss_pred             CCCEEEEEeecCCHhHHHHHHHHhcc-----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhH
Q 011136          166 GADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL  240 (493)
Q Consensus       166 gaDIvKia~~a~s~~D~~~l~~~~~~-----~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l  240 (493)
                      ||||+|+|+||++.+|++++++++.+     .+.|+|+||||+.|++||+++++|||++||+++++  ++||||++++++
T Consensus       165 gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tya~~~~--~sAPGQ~~~~~l  242 (252)
T d1gqna_         165 GADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQ--ASAPGQIAVNDL  242 (252)
T ss_dssp             TCSEEEEEECCSSHHHHHHHHHHHHHHHHHTCSSCCEEEECTTTTHHHHHCHHHHTCCEEECBSSS--CCSTTCCBHHHH
T ss_pred             CCCeEEEEecCCCHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcchhHHHHHHHhCCceEeccCCC--CCCCCCCCHHHH
Confidence            99999999999999999999988543     37899999999999999999999999999999986  499999999999


Q ss_pred             HHHhhcc
Q 011136          241 LDLYNFR  247 (493)
Q Consensus       241 ~~~~~~~  247 (493)
                      +++++..
T Consensus       243 ~~~l~~l  249 (252)
T d1gqna_         243 RSVLMIL  249 (252)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998753

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.3e-48  Score=379.06  Aligned_cols=220  Identities=25%  Similarity=0.405  Sum_probs=185.4

Q ss_pred             cEEEEeecCC-CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch---hHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHH
Q 011136           24 TLICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDEN   98 (493)
Q Consensus        24 ~~Icv~l~~~-~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~   98 (493)
                      -+||+|++.. +.++.+.+..+....++|+||||+|+|.+.+..   +.+..+++. .++|+|||+|+++|||.++++++
T Consensus         2 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~v~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~   81 (236)
T d1sfla_           2 VEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTND   81 (236)
T ss_dssp             CEEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTTSTTCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHH
T ss_pred             CcEEEecCCchhHHHHHHHHHHhcCcCCCEEEEEeccccCCCHHHHHHHHHHHHhcCCCCcEEEEEeCHHHCCCCCCCHH
Confidence            4788999998 667776554444466899999999999887543   223334332 37899999999999999999999


Q ss_pred             HHHHHHHHHHHhC-CcEEEEEcccccchhH--HH-hhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Q 011136           99 ERVDVLRLAMELG-ADYIDVELQVAREFND--SI-RGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT  174 (493)
Q Consensus        99 ~~~~ll~~~l~~~-~dyIDIEl~~~~~~~~--~l-~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~  174 (493)
                      +|+++++.+++.+ +||||||+..+.+..+  ++ ..+++.+++||+|||||++||+.+++.+++++|.+.||||+|+|+
T Consensus        82 ~~~~ll~~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~~~~vI~S~H~f~~TP~~~el~~~~~~~~~~gaDivKia~  161 (236)
T d1sfla_          82 SYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAV  161 (236)
T ss_dssp             HHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             HHHHHHHHHHHhcCCchhhhhhcchhhHHHHHHHHHHhhcCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            9999999988874 9999999998765432  22 234568999999999999999999999999999999999999999


Q ss_pred             ecCCHhHHHHHHHHhcc----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCcCCCCCCCCHHhHHHHhh
Q 011136          175 TALDITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN  245 (493)
Q Consensus       175 ~a~s~~D~~~l~~~~~~----~~~PlIa~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~i~~l~~~~~  245 (493)
                      ||++.+|++++++++..    .+.|+|+||||+.|++||+++++|||++||++++++  +||||+++++|+++++
T Consensus       162 ~~~~~~D~~~ll~~~~~~~~~~~~pii~~~MG~~G~~sRi~~~~~GS~~tya~~~~~--sAPGQ~~~~~lr~~l~  234 (236)
T d1sfla_         162 MPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEP--QAPGQIDVTDLKAQVT  234 (236)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHCSSEEEEEECTGGGHHHHHTGGGGTBCEEEEBSSCC--SSTTCCBHHHHHHHHT
T ss_pred             ecCCHHHHHHHHHHHHHHhhccCCCEEEEecCCcchHHHHHHHHhCCceEEccCCCC--CCCCCcCHHHHHHHHh
Confidence            99999999999988543    478999999999999999999999999999999874  9999999999999886

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=1.3e-32  Score=231.98  Aligned_cols=98  Identities=28%  Similarity=0.400  Sum_probs=93.8

Q ss_pred             eEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHH
Q 011136          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (493)
Q Consensus       254 ~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  331 (493)
                      ++|||+|+||+||+||.|||++|+++|+++.|.++++  ++++++++.+++.+|.|+|||||||+++++++|++++.|+.
T Consensus         2 ~~~~viG~PI~hS~SP~ihn~~~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~~   81 (101)
T d1p77a2           2 DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAKL   81 (101)
T ss_dssp             EEEEEEESSCTTCCHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             CEEEEeCCCcccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHhccccceeeccHHHHHHHHHhccCCHHHHH
Confidence            5899999999999999999999999999999999987  68999999998899999999999999999999999999999


Q ss_pred             hcceeeEEEeccCCeEEEEec
Q 011136          332 IGAVNCIIRRQSDGKLFGYNT  352 (493)
Q Consensus       332 igAvNti~~~~~~g~l~G~NT  352 (493)
                      +||||||++++ +|+|+|+||
T Consensus        82 igAvNti~~~~-~g~l~G~NT  101 (101)
T d1p77a2          82 AEACNTLKKLD-DGKLYADNT  101 (101)
T ss_dssp             HTCCSEEEECT-TSCEEEECC
T ss_pred             cCeeEEEEECC-CCEEEEecC
Confidence            99999998763 899999998

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.2e-32  Score=232.64  Aligned_cols=99  Identities=30%  Similarity=0.531  Sum_probs=95.5

Q ss_pred             CceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHH
Q 011136          252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVA  329 (493)
Q Consensus       252 ~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  329 (493)
                      ++++|||||+||+||+||.|||.+|+++|+|+.|.++++  ++++++++.+++.+|.|+|||||||+++++++|++++.|
T Consensus         2 k~~l~GliG~Pi~hS~SP~ihn~~f~~~gi~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a   81 (102)
T d1vi2a2           2 KYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAA   81 (102)
T ss_dssp             CCEEEEEEESCCTTCSHHHHHHHHHHHTTCSEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTSTTGGGGGCSEECHHH
T ss_pred             CeEEEEEEcCCcccccCHHHHHHHHHHcCCCcEEeeEeeCchHHHHHHHHhhhhccchhhhhhHHHHHHHHhcccCCHHH
Confidence            568999999999999999999999999999999999998  579999999988999999999999999999999999999


Q ss_pred             HHhcceeeEEEeccCCeEEEEec
Q 011136          330 KSIGAVNCIIRRQSDGKLFGYNT  352 (493)
Q Consensus       330 ~~igAvNti~~~~~~g~l~G~NT  352 (493)
                      +.+||||||+++  +|+|+|+||
T Consensus        82 ~~igAvNti~~~--~g~l~G~NT  102 (102)
T d1vi2a2          82 KLVGAINTIVND--DGYLRGYNT  102 (102)
T ss_dssp             HHHTCCSEEEEE--TTEEEEECH
T ss_pred             HhhCcEEEEEEE--CCEEEEeCC
Confidence            999999999988  999999998

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.2e-32  Score=230.68  Aligned_cols=98  Identities=31%  Similarity=0.533  Sum_probs=93.7

Q ss_pred             eEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhcHHHHH
Q 011136          254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS  331 (493)
Q Consensus       254 ~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  331 (493)
                      +.|||||+||+||+||.|||.+|+++|+|+.|.++++  +++.++++.++..+|.|+|||||||+++++++|++++.|+.
T Consensus         2 ~~~~liG~pi~hS~SP~ihn~~~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~~   81 (101)
T d1nyta2           2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAAL   81 (101)
T ss_dssp             CSEEEEESSCTTCSHHHHHHHHHHHHTCCCCEEEEECCTTCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             CEEEEeCCCcccccCHHHHHHHHHHcCCcchhhhhcCChHhHHHHHHHhhhccchhheeehHHHHHHHHHhccCChHHHH
Confidence            5799999999999999999999999999999999988  68999999998899999999999999999999999999999


Q ss_pred             hcceeeEEEeccCCeEEEEec
Q 011136          332 IGAVNCIIRRQSDGKLFGYNT  352 (493)
Q Consensus       332 igAvNti~~~~~~g~l~G~NT  352 (493)
                      +||||||++.+ +|+|+||||
T Consensus        82 igAvNti~~~~-~g~l~G~NT  101 (101)
T d1nyta2          82 AGAVNTLMRLE-DGRLLGDNT  101 (101)
T ss_dssp             HTCCSEEEECT-TSCEEEECC
T ss_pred             hCcEEEEEECC-CCeEEEeCC
Confidence            99999999863 899999998

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=4.1e-31  Score=226.10  Aligned_cols=103  Identities=46%  Similarity=0.677  Sum_probs=98.9

Q ss_pred             ccCCCceEEEeecCCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhh
Q 011136          248 QMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEV  325 (493)
Q Consensus       248 ~~~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~  325 (493)
                      +++++|++|||+|+||+||+||.|||++|+++|+++.|.++++  ++++.+++.+++.+|.|+|||||||+++++++|++
T Consensus         6 mi~~~tk~~gliG~pi~~S~SP~ihn~~~~~~gi~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~   85 (110)
T d1nvta2           6 MINAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEI   85 (110)
T ss_dssp             CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSEE
T ss_pred             ccCCCccEEEEEcCCcccccCHHHHHHHHHHcCCcEEEeecccCHHHHHHHHHhhcccCcchhheehHHHHHHHHHhccC
Confidence            6788899999999999999999999999999999999999988  47999999998889999999999999999999999


Q ss_pred             cHHHHHhcceeeEEEeccCCeEEEEec
Q 011136          326 DTVAKSIGAVNCIIRRQSDGKLFGYNT  352 (493)
Q Consensus       326 ~~~A~~igAvNti~~~~~~g~l~G~NT  352 (493)
                      |+.|+.+||||||+++  +|+|+||||
T Consensus        86 s~~a~~igavNti~~~--~~~l~G~NT  110 (110)
T d1nvta2          86 DKDAQLIGAVNTIKIE--DGKAIGYNT  110 (110)
T ss_dssp             CHHHHHHTCCCEEEEE--TTEEEEECC
T ss_pred             CHHHHHhCcEEEEEEE--CCEEEEeCC
Confidence            9999999999999998  899999998

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.96  E-value=8e-30  Score=215.16  Aligned_cols=101  Identities=25%  Similarity=0.443  Sum_probs=96.4

Q ss_pred             ccCCCceEE-EeecCCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCeEEEccCchHHHhhhhhhhc
Q 011136          248 QMGPDTKVF-GIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD  326 (493)
Q Consensus       248 ~~~~~~~~~-~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  326 (493)
                      +++++|++| ++.|+|  ||+||.|||++|+++|+|+.|.++++++++++++.++..+|.|+|||||||+++++++|+++
T Consensus         1 mi~~~t~~~~~i~g~P--~s~SP~ihn~~~~~~gi~~~Y~~~~v~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~s   78 (102)
T d1npya2           1 MINKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIH   78 (102)
T ss_dssp             CCCTTCEEEEEECSSC--CSHHHHHHHHHHHHHTCCEEEEEECCSCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEEC
T ss_pred             CcCCCCEEEEEEcCCc--ccCCHHHHHHHHHHcCCCeEEeeEecccHHHHHHHHhccccceeEEehhHHHHHHHHhhhCC
Confidence            367889985 899999  88999999999999999999999999999999999988999999999999999999999999


Q ss_pred             HHHHHhcceeeEEEeccCCeEEEEec
Q 011136          327 TVAKSIGAVNCIIRRQSDGKLFGYNT  352 (493)
Q Consensus       327 ~~A~~igAvNti~~~~~~g~l~G~NT  352 (493)
                      +.|+.+||||||+++  +|+|+||||
T Consensus        79 ~~a~~igAvNti~~~--~g~l~G~NT  102 (102)
T d1npya2          79 PSAQAIESVNTIVND--NGFLRAYNT  102 (102)
T ss_dssp             HHHHTTTCCCEEEEE--TTEEEEECH
T ss_pred             hhhhhcCcEEEEEEE--CCEEEEeCC
Confidence            999999999999988  899999998

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=2.5e-17  Score=150.01  Aligned_cols=112  Identities=21%  Similarity=0.169  Sum_probs=85.9

Q ss_pred             cHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhccc
Q 011136          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTL  432 (493)
Q Consensus       353 D~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~  432 (493)
                      ||.||+.+|++. .          ..++||+|+|+||||+|||++++|.+.|++|+|+|||.+|+++|++.+....    
T Consensus         1 Dg~Gf~~~l~~~-~----------~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~----   65 (170)
T d1nyta1           1 DGVGLLSDLERL-S----------FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG----   65 (170)
T ss_dssp             HHHHHHHHHHHH-T----------CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS----
T ss_pred             CHhHHHHHHHHc-C----------CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc----
Confidence            899999999863 1          5678999999999999999999999999999999999999999999887543    


Q ss_pred             ccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          433 LFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       433 ~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                         .+..+.. ++.-..++++++|+||+||.++....+    +...-+..+|+|-
T Consensus        66 ---~~~~~~~-~~~~~~~~dliIN~Tp~G~~~~~~~~~----~~~~~~~~~v~D~  112 (170)
T d1nyta1          66 ---SIQALSM-DELEGHEFDLIINATSSGISGDIPAIP----SSLIHPGIYCYDM  112 (170)
T ss_dssp             ---SEEECCS-GGGTTCCCSEEEECCSCGGGTCCCCCC----GGGCCTTCEEEES
T ss_pred             ---ccccccc-ccccccccceeecccccCcccCCCCCc----HHHhccCcEEEEe
Confidence               2233222 221125689999999999997654222    2234466777773

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.69  E-value=1.4e-17  Score=151.42  Aligned_cols=108  Identities=20%  Similarity=0.215  Sum_probs=82.2

Q ss_pred             cHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcc
Q 011136          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNT  431 (493)
Q Consensus       353 D~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~  431 (493)
                      ||+||..+|+...           .+ ++++|+|||+||+|||++++|.+.|+ +|+|+||+.++++.|++.++..+.. 
T Consensus         1 D~~G~~~~l~~~~-----------~~-~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~-   67 (167)
T d1npya1           1 DYIAIVKLIEKYH-----------LN-KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYIN-   67 (167)
T ss_dssp             HHHHHHHHHHHTT-----------CC-TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEES-
T ss_pred             ChHHHHHHHHHcC-----------CC-CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhh-
Confidence            8999999998641           23 57899999999999999999999998 9999999999999999887654421 


Q ss_pred             cccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136          432 LLFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       432 ~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                                ++   ...+++|+||+||+||.+..-..+........-+..+|+|
T Consensus        68 ----------~~---~~~~~DliINaTpiGm~~~~~~~~l~~~~~~~~~~~~v~D  109 (167)
T d1npya1          68 ----------SL---ENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFD  109 (167)
T ss_dssp             ----------CC---TTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEE
T ss_pred             ----------cc---cccchhhheeccccCCccccccccccccHhhcCCcceEEE
Confidence                      11   1256889999999999876543322211222235668877

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=99.60  E-value=1e-15  Score=139.57  Aligned_cols=96  Identities=16%  Similarity=0.192  Sum_probs=71.9

Q ss_pred             cHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhccc
Q 011136          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTL  432 (493)
Q Consensus       353 D~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~  432 (493)
                      ||.||+.+|++.           +..+++|+|+|+|+||+|||++++|.+.+.+|+|+|||.++++++++.++...    
T Consensus         1 D~~Gf~~~l~~~-----------~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~----   65 (171)
T d1p77a1           1 DGIGLVTDLQRL-----------NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG----   65 (171)
T ss_dssp             HHHHHHHHHHHT-----------TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS----
T ss_pred             CHHHHHHHHHHc-----------CCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc----
Confidence            899999999763           15678999999999999999999999855599999999999999999887543    


Q ss_pred             ccceEEEEeecccccCCceEEEEeccccCCchhhH
Q 011136          433 LFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWV  467 (493)
Q Consensus       433 ~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~  467 (493)
                         .+..+...+.. ..+++|++|+||+||.++..
T Consensus        66 ---~~~~~~~~~~~-~~~~diiIN~tp~g~~~~~~   96 (171)
T d1p77a1          66 ---NIQAVSMDSIP-LQTYDLVINATSAGLSGGTA   96 (171)
T ss_dssp             ---CEEEEEGGGCC-CSCCSEEEECCCC-------
T ss_pred             ---ccchhhhcccc-ccccceeeeccccccccccc
Confidence               23333332222 36789999999999987654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.59  E-value=7.4e-16  Score=140.97  Aligned_cols=118  Identities=24%  Similarity=0.226  Sum_probs=85.3

Q ss_pred             cHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhccc
Q 011136          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTL  432 (493)
Q Consensus       353 D~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~  432 (493)
                      ||+||+.+|++..           ..+++|+|+|||+||+|||++++|.+.| +|+|+||+.+|+++|++.+........
T Consensus         1 D~~G~~~~l~~~~-----------~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~   68 (177)
T d1nvta1           1 DGIGARMALEEEI-----------GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKF   68 (177)
T ss_dssp             HHHHHHHHHHHHH-----------CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCH
T ss_pred             CHHHHHHHHHHhC-----------CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhh
Confidence            8999999998753           4688999999999999999999997666 999999999999999998875432110


Q ss_pred             ccceEEEEeecccccCCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136          433 LFDSVIVIRILLFTWHLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       433 ~~~~~~v~~~l~~~~~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                       ...+. +..++.. ..++++++|+||+||.++.-... ...+....+..+|.|
T Consensus        69 -~~~~~-~~~~~~~-~~~~dliIn~tp~g~~~~~~~~~-~~~~~~~~~~~~v~D  118 (177)
T d1nvta1          69 -GEEVK-FSGLDVD-LDGVDIIINATPIGMYPNIDVEP-IVKAEKLREDMVVMD  118 (177)
T ss_dssp             -HHHEE-EECTTCC-CTTCCEEEECSCTTCTTCCSSCC-SSCSTTCCSSSEEEE
T ss_pred             -hhhhh-hhhhhhc-cchhhhhccCCcccccccccccc-hhhhhccCcccceee
Confidence             01111 2334333 36789999999999987543322 112333346667666

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=2.1e-14  Score=131.80  Aligned_cols=116  Identities=24%  Similarity=0.179  Sum_probs=78.0

Q ss_pred             cHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHH---HHHHhhhhh
Q 011136          353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLT---FLRLMSWLL  428 (493)
Q Consensus       353 D~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~---la~~~~~~~  428 (493)
                      ||.||+++|++.           +.++++|+|+|+|+||+|||++++|.+.|+ +|+|+||+.++.++   +++.++...
T Consensus         1 D~~Gf~~~l~~~-----------~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~   69 (182)
T d1vi2a1           1 DGTGHIRAIKES-----------GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT   69 (182)
T ss_dssp             HHHHHHHHHHHT-----------TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHc-----------CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhc
Confidence            899999999763           156889999999999999999999999999 99999998776555   444444322


Q ss_pred             hcccccceEEEEeecc--ccc---CCceEEEEeccccCCchhhHhhhhhHHHHhhccceEeee
Q 011136          429 LNTLLFDSVIVIRILL--FTW---HLKFFIAANIIHLGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       429 ~~~~~~~~~~v~~~l~--~~~---~~~~~i~~n~tplG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      .     ..+.+ .++.  +.|   ..+++|++|+||+||.+..-.+... ....+-++.+|+|
T Consensus        70 ~-----~~~~~-~~~~~~~~~~~~~~~~diiIN~Tp~G~~~~~~~~~~~-~~~~~~~~~~v~D  125 (182)
T d1vi2a1          70 D-----CVVTV-TDLADQQAFAEALASADILTNGTKVGMKPLENESLVN-DISLLHPGLLVTE  125 (182)
T ss_dssp             S-----CEEEE-EETTCHHHHHHHHHTCSEEEECSSTTSTTSCSCCSCC-CGGGSCTTCEEEE
T ss_pred             C-----cceEe-eecccccchhhhhcccceeccccCCccccccchhhhh-HHHhhhcchhhHH
Confidence            1     11222 2211  111   1467899999999999643322111 1222345567766

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.97  E-value=2.1e-10  Score=105.27  Aligned_cols=103  Identities=17%  Similarity=0.084  Sum_probs=77.8

Q ss_pred             EEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          349 GYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       349 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      |+|||+.|.+..+.+..          +.+++||+++|.|+ ||+|++++..|++.|++|++++|+.++.+++++.+...
T Consensus         1 g~~~~~~~~v~~~~~~~----------~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~   70 (191)
T d1luaa1           1 GSNTTAAAGVALVVKAA----------GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR   70 (191)
T ss_dssp             GHHHHHHHHHHHHHHHT----------TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHc----------CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc
Confidence            68999999999886643          26899999999995 89999999999999999999999999999999887654


Q ss_pred             hhcccccceE--EEEeecccccCCceEEEEeccccCCch
Q 011136          428 LLNTLLFDSV--IVIRILLFTWHLKFFIAANIIHLGNHL  464 (493)
Q Consensus       428 ~~~~~~~~~~--~v~~~l~~~~~~~~~i~~n~tplG~~~  464 (493)
                      ...  ....+  .-..++.. +-.+.+|++|+++.|++.
T Consensus        71 ~~~--~~~~~d~~~~~~~~~-~~~~iDilin~Ag~g~~~  106 (191)
T d1luaa1          71 FKV--NVTAAETADDASRAE-AVKGAHFVFTAGAIGLEL  106 (191)
T ss_dssp             HTC--CCEEEECCSHHHHHH-HTTTCSEEEECCCTTCCC
T ss_pred             cch--hhhhhhcccHHHHHH-HhcCcCeeeecCcccccc
Confidence            311  00000  00012222 236778999999988763

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.90  E-value=1.3e-09  Score=97.35  Aligned_cols=99  Identities=18%  Similarity=0.217  Sum_probs=71.4

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      ..+++++++|||+|++|++++.+|...|+ +++|+|||.+|++++++.++....+         +.++.+.. .+++|++
T Consensus        20 ~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~---------~~~~~~~l-~~~Divi   89 (159)
T d1gpja2          20 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVR---------FDELVDHL-ARSDVVV   89 (159)
T ss_dssp             SCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECC---------GGGHHHHH-HTCSEEE
T ss_pred             CCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhccccc---------chhHHHHh-ccCCEEE
Confidence            35789999999999999999999999999 8999999999999999988744321         23343333 5789999


Q ss_pred             eccccCCchhhHhhhhhHHHHhh---ccceEeeec
Q 011136          456 NIIHLGNHLEWVTAAFNLFFYLT---CNSYVVMEK  487 (493)
Q Consensus       456 n~tplG~~~~~~~~~~~~~~~~~---~~~~~~~~~  487 (493)
                      ++|+-+.+-  +..........+   .+..+++|=
T Consensus        90 ~atss~~~i--i~~~~i~~~~~~r~~~~~~~iiDl  122 (159)
T d1gpja2          90 SATAAPHPV--IHVDDVREALRKRDRRSPILIIDI  122 (159)
T ss_dssp             ECCSSSSCC--BCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred             EecCCCCcc--ccHhhhHHHHHhcccCCCeEEEee
Confidence            999866431  222222233322   234578874

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.22  E-value=5e-07  Score=79.58  Aligned_cols=48  Identities=17%  Similarity=0.150  Sum_probs=44.3

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      +|+|+|||||.+|+.++..|.+.|++|+|+|||.++++++++.+....
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~   49 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHST   49 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccc
Confidence            689999999999999999999999999999999999999998776443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.52  E-value=6e-05  Score=65.82  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=41.8

Q ss_pred             EEEEE-ecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          383 LFVVI-GAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       383 ~vlvl-GaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      |+.|+ |+|++|++++..|++.|++|.+++|++++++++++++....
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~   48 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIA   48 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            57888 88999999999999999999999999999999999877543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.51  E-value=0.00018  Score=62.68  Aligned_cols=90  Identities=12%  Similarity=0.105  Sum_probs=59.9

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGN  462 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~  462 (493)
                      |+.|||+|-||.+++.+|.+.|++|++++|+.++.++..+ .+...         .....++.-=..|..|++      +
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~-~~~~~---------~~~~~~~~~~~~DiIila------v   65 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-RQLVD---------EAGQDLSLLQTAKIIFLC------T   65 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-TTSCS---------EEESCGGGGTTCSEEEEC------S
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH-hhccc---------eeeeeccccccccccccc------C
Confidence            5899999999999999999999999999999888776543 22111         011112111113444444      5


Q ss_pred             chhhHhhhhhHHHHhhccceEeeecc
Q 011136          463 HLEWVTAAFNLFFYLTCNSYVVMEKT  488 (493)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
                      +++.+.+-+......+-++.+|+|-+
T Consensus        66 p~~~~~~vl~~l~~~l~~~~iv~~~~   91 (165)
T d2f1ka2          66 PIQLILPTLEKLIPHLSPTAIVTDVA   91 (165)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEECC
T ss_pred             cHhhhhhhhhhhhhhcccccceeecc
Confidence            56666666666666667777888764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.38  E-value=0.0003  Score=66.21  Aligned_cols=52  Identities=23%  Similarity=0.144  Sum_probs=47.0

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      .+|+||.+||-|+ +|.|++++..|++.|++|++.+|+.++.+++++++....
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g   56 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG   56 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            5789999999998 679999999999999999999999999999998876543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=7.3e-05  Score=70.11  Aligned_cols=80  Identities=15%  Similarity=0.041  Sum_probs=61.0

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEe-ec-----------
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIR-IL-----------  443 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~-~l-----------  443 (493)
                      .++.||.++|-|+ +|.|++++..|++.|++|++++|+.++.+++++++.....      +++.+. ++           
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~------~~~~~~~Dvs~~~~v~~~~~   76 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA------KVHTFVVDCSNREDIYSSAK   76 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC------CEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------cEEEEEeeCCCHHHHHHHHH
Confidence            4578999999988 6799999999999999999999999999999998864331      111111 11           


Q ss_pred             --ccccCCceEEEEeccccCCc
Q 011136          444 --LFTWHLKFFIAANIIHLGNH  463 (493)
Q Consensus       444 --~~~~~~~~~i~~n~tplG~~  463 (493)
                        .+.+ .+.++++|...++..
T Consensus        77 ~i~~~~-g~idilinnag~~~~   97 (244)
T d1yb1a_          77 KVKAEI-GDVSILVNNAGVVYT   97 (244)
T ss_dssp             HHHHHT-CCCSEEEECCCCCCC
T ss_pred             HHHHHc-CCCceeEeecccccc
Confidence              1334 667888998888765

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.33  E-value=0.00018  Score=67.82  Aligned_cols=52  Identities=27%  Similarity=0.220  Sum_probs=47.0

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      ++|+||+|||.|+ +|.|++++..|++.|++|++++|+.++++++++.+....
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~   54 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG   54 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            5688999999995 889999999999999999999999999999988876544

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.31  E-value=0.00012  Score=64.14  Aligned_cols=96  Identities=14%  Similarity=0.049  Sum_probs=61.4

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccC
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLG  461 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG  461 (493)
                      ++|-+||.|-||.+++..|.+.|++|+++||+.++.+.+.+.-....            .+..+.. ...++++-+.|-.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~------------~~~~e~~-~~~diii~~v~~~   68 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAA------------RSARDAV-QGADVVISMLPAS   68 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEEC------------SSHHHHH-TSCSEEEECCSCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhcccc------------chhhhhc-cccCeeeecccch
Confidence            47999999999999999999999999999999999887765321111            1111111 2233444344444


Q ss_pred             CchhhHhhhhhHHHHhhccceEeeecccc
Q 011136          462 NHLEWVTAAFNLFFYLTCNSYVVMEKTEI  490 (493)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (493)
                      -..+.+..........+.++++++|-|.+
T Consensus        69 ~~~~~v~~~~~~~~~~l~~g~iiid~st~   97 (162)
T d3cuma2          69 QHVEGLYLDDDGLLAHIAPGTLVLECSTI   97 (162)
T ss_dssp             HHHHHHHHSTTCHHHHSCTTCEEEECSCC
T ss_pred             hhHHHHHhccccccccCCCCCEEEECCCC
Confidence            33444433333345555678888887654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.29  E-value=0.00039  Score=60.89  Aligned_cols=42  Identities=24%  Similarity=0.250  Sum_probs=39.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      |++.|||+|.+|.+++..|++.|++|++++|+.++.+.+.+.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~   43 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR   43 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc
Confidence            789999999999999999999999999999999998887653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00037  Score=67.02  Aligned_cols=51  Identities=27%  Similarity=0.320  Sum_probs=45.9

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      .-|+||.+||-|+ +|.|++++..|++.|++|++++|+.++.+++++++...
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~   59 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQAN   59 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh
Confidence            3489999999987 77999999999999999999999999999999887643

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.27  E-value=0.0004  Score=65.29  Aligned_cols=50  Identities=20%  Similarity=0.180  Sum_probs=45.2

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      |+||.+||-|+ +|.|++++..|++.|++|++++|+.++.+++++.+....
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g   53 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG   53 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            67999999988 779999999999999999999999999999998876543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=7.2e-05  Score=70.40  Aligned_cols=49  Identities=29%  Similarity=0.398  Sum_probs=44.8

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      -|+||.+||-|+ +|.|++++..|++.|++|++.+|+.++++++++++..
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~   52 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG   52 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCC
Confidence            478999999997 7899999999999999999999999999999887653

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.23  E-value=0.00042  Score=59.66  Aligned_cols=44  Identities=25%  Similarity=0.320  Sum_probs=39.7

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ++.+||+|-||.+++..|.+.|. +|++++|+.++.++++++++.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~   46 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGV   46 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccc
Confidence            58899999999999999988884 999999999999999987653

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.22  E-value=0.00044  Score=64.73  Aligned_cols=52  Identities=19%  Similarity=0.159  Sum_probs=47.0

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      ..+++|.+||-|+ +|.|++++..|++.|++|++++|+.++++++++++....
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g   58 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG   58 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            5688999999988 789999999999999999999999999999999887543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.13  E-value=0.00071  Score=63.51  Aligned_cols=49  Identities=16%  Similarity=0.231  Sum_probs=43.9

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      |+||.+||-|+ +|.|++++..|++.|++|++.+|+.++.+++++.+...
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~   51 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLET   51 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh
Confidence            57899999988 68999999999999999999999999999888876544

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00035  Score=65.12  Aligned_cols=80  Identities=21%  Similarity=0.164  Sum_probs=56.9

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhh---cccccceEEEEeecccccCCceEE
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLL---NTLLFDSVIVIRILLFTWHLKFFI  453 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~---~~~~~~~~~v~~~l~~~~~~~~~i  453 (493)
                      +|+||++||-|+ +|.|++++..|++.|++|++++|+.++.+++++++.....   +-...+.+   +..-+.+ ...++
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v---~~~~~~~-g~iDi   77 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDAT---EKALGGI-GPVDL   77 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHH---HHHHTTC-CCCSE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHH---HHHHHHc-CCCeE
Confidence            478999999998 6899999999999999999999999999999887754321   10000110   1111344 55788


Q ss_pred             EEeccccC
Q 011136          454 AANIIHLG  461 (493)
Q Consensus       454 ~~n~tplG  461 (493)
                      ++|.....
T Consensus        78 lVnnAg~~   85 (242)
T d1cyda_          78 LVNNAALV   85 (242)
T ss_dssp             EEECCCCC
T ss_pred             EEECCccc
Confidence            88876543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.0003  Score=65.57  Aligned_cols=49  Identities=27%  Similarity=0.392  Sum_probs=44.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      +|+||.++|-|+ +|.|++++..|++.|++|++++|+.++++++++.++.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~   50 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGA   50 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC
Confidence            367999999987 7799999999999999999999999999999988764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00039  Score=64.83  Aligned_cols=82  Identities=23%  Similarity=0.189  Sum_probs=58.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhh---cccccceEEEEeecccccCCceEE
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLL---NTLLFDSVIVIRILLFTWHLKFFI  453 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~---~~~~~~~~~v~~~l~~~~~~~~~i  453 (493)
                      .|+||++||-|+ +|.|++++..|++.|++|++++|+.++.+++++++.....   +-...+.+   +..-+.+ ...++
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v---~~~~~~~-g~iDi   79 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEAT---ERALGSV-GPVDL   79 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHH---HHHHTTC-CCCCE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHH---HHHHHHh-CCceE
Confidence            478999999988 7799999999999999999999999999999887764321   10000111   1111344 55788


Q ss_pred             EEeccccCCc
Q 011136          454 AANIIHLGNH  463 (493)
Q Consensus       454 ~~n~tplG~~  463 (493)
                      ++|..+....
T Consensus        80 lVnnAg~~~~   89 (244)
T d1pr9a_          80 LVNNAAVALL   89 (244)
T ss_dssp             EEECCCCCCC
T ss_pred             EEeccccccc
Confidence            8987766543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00031  Score=65.21  Aligned_cols=49  Identities=20%  Similarity=0.243  Sum_probs=44.8

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .++||.+||-|+ +|.|++++..|++.|++|++.+|+.++.++++++++.
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~   51 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGN   51 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC
Confidence            478999999988 7799999999999999999999999999999988754

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.0002  Score=56.72  Aligned_cols=38  Identities=24%  Similarity=0.244  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      +++||+++|+|.|.+|++++..|.+.|++|++++....
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            46799999999999999999999999999999998543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.07  E-value=0.0015  Score=56.59  Aligned_cols=94  Identities=7%  Similarity=0.009  Sum_probs=59.8

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      |+++|||.|-+|.+++.+|.+.|.  +|+.++|+.+..+.+.+ .+...         .+..+.+.....+.++++-+  
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~-~~~~~---------~~~~~~~~~~~~~~dlIila--   69 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-LGIID---------EGTTSIAKVEDFSPDFVMLS--   69 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-TTSCS---------EEESCGGGGGGTCCSEEEEC--
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH-hhcch---------hhhhhhhhhhcccccccccc--
Confidence            479999999999999999999995  89999999877655443 33211         11122221111233444434  


Q ss_pred             cCCchhhHhhhhhHHHHhhccceEeeeccc
Q 011136          460 LGNHLEWVTAAFNLFFYLTCNSYVVMEKTE  489 (493)
Q Consensus       460 lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (493)
                        .+++.+..-........-++.+|+|-+.
T Consensus        70 --~p~~~~~~vl~~l~~~~~~~~ii~d~~s   97 (171)
T d2g5ca2          70 --SPVRTFREIAKKLSYILSEDATVTDQGS   97 (171)
T ss_dssp             --SCHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             --CCchhhhhhhhhhhcccccccccccccc
Confidence              5566665555554444567889998764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.04  E-value=0.00051  Score=64.27  Aligned_cols=49  Identities=29%  Similarity=0.428  Sum_probs=44.2

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      +++||.+||-|+ +|.|++++..|++.|++|.+++|+.++.+++++++..
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~   51 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTE   51 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
Confidence            578999999988 7799999999999999999999999999888876653

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.03  E-value=0.00042  Score=65.11  Aligned_cols=49  Identities=35%  Similarity=0.401  Sum_probs=44.5

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      +|+||.+||-|+ +|.|++++..|++.|++|++++|+.++.++++++++.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~   51 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGD   51 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGG
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC
Confidence            478999999998 6799999999999999999999999999999887753

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.03  E-value=0.00047  Score=65.01  Aligned_cols=49  Identities=27%  Similarity=0.295  Sum_probs=44.9

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      |+||.+||-|+ +|.|++++..|++.|++|++++|+.++++++++++...
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~   53 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP   53 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC
Confidence            78999999987 77999999999999999999999999999999987643

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00039  Score=65.55  Aligned_cols=49  Identities=33%  Similarity=0.441  Sum_probs=44.7

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      |+||++||-|| +|.|++++..|++.|++|++++|+.++.+++++++...
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~   61 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL   61 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhh
Confidence            89999999988 78999999999999999999999999999998875543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00052  Score=64.40  Aligned_cols=51  Identities=29%  Similarity=0.300  Sum_probs=46.7

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      .++||.|||.|+ +|.|++++..|++.|++|++++|+.++.+++++++....
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~   58 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG   58 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            378999999988 779999999999999999999999999999999887654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.01  E-value=0.00052  Score=65.22  Aligned_cols=51  Identities=25%  Similarity=0.315  Sum_probs=45.6

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      ..|+||.+||-|+ ||.|++++..|++.|++|++.+|+.++.+++++++...
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~   72 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ   72 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh
Confidence            3689999999985 88999999999999999999999999999888876544

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.01  E-value=0.001  Score=60.44  Aligned_cols=85  Identities=21%  Similarity=0.192  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccc
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLL  433 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~  433 (493)
                      +.|...+++..+...+      ..+++||+|+|.|.|.+|+.++..|.+.|++|++++.+.++...... ++..      
T Consensus         6 a~Gv~~~~~~~~~~~g------~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~-~g~~------   72 (201)
T d1c1da1           6 AVGVFEAMKATVAHRG------LGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVA-LGHT------   72 (201)
T ss_dssp             HHHHHHHHHHHHHHTT------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-TTCE------
T ss_pred             HHHHHHHHHHHHHHhC------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHh-hccc------
Confidence            5777777776543211      13689999999999999999999999999999999999887665432 2211      


Q ss_pred             cceEEEEeecccccCCceEEEEec
Q 011136          434 FDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       434 ~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                           . -+.++-|..+.+|++|+
T Consensus        73 -----~-~~~~~~~~~~~DI~iPc   90 (201)
T d1c1da1          73 -----A-VALEDVLSTPCDVFAPC   90 (201)
T ss_dssp             -----E-CCGGGGGGCCCSEEEEC
T ss_pred             -----c-cCccccccccceeeecc
Confidence                 1 23456677788899976

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.00  E-value=0.00046  Score=64.92  Aligned_cols=52  Identities=23%  Similarity=0.121  Sum_probs=46.9

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      .+|+||.+||-|+ +|.|++++..|++.|++|++++|+.++.+++++++....
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~   56 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG   56 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            5789999999988 779999999999999999999999999999998876543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.00  E-value=0.00054  Score=63.94  Aligned_cols=49  Identities=27%  Similarity=0.323  Sum_probs=45.2

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .|+||.+||-|+ +|.|++++..|++.|++|++.+|+.++.++++++++.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~   52 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD   52 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhC
Confidence            478999999988 7899999999999999999999999999999988764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.96  E-value=0.002  Score=55.75  Aligned_cols=49  Identities=20%  Similarity=0.192  Sum_probs=43.4

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      +.+|+.|||+|..|.++++.|+..+. ++++++++.++++..+.++....
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~   55 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVT   55 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhc
Confidence            45799999999999999999998887 99999999999999988877643

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00044  Score=64.91  Aligned_cols=52  Identities=27%  Similarity=0.340  Sum_probs=46.6

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      ..|+||.++|-|+ +|.|++++..|++.|++|++.+|+.++++++++++....
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g   59 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG   59 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            3578999999988 789999999999999999999999999999998887543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.96  E-value=0.00044  Score=64.86  Aligned_cols=48  Identities=29%  Similarity=0.356  Sum_probs=44.3

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      |+||.++|-|+ +|.|++++..|++.|++|++.+|+.+++++++++++.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~   51 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGP   51 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC
Confidence            67999999988 8899999999999999999999999999999988753

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.95  E-value=0.0014  Score=61.25  Aligned_cols=48  Identities=25%  Similarity=0.246  Sum_probs=42.8

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      ||.+||-|+ +|.|++++..|++.|++|++++|+.++.+++++++....
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g   50 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG   50 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            677888887 789999999999999999999999999999998886543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.95  E-value=0.00062  Score=64.49  Aligned_cols=48  Identities=23%  Similarity=0.318  Sum_probs=43.8

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      |+||.+||-|+ +|.|++++..|++.|++|++++|+.++.+++.++++.
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~   51 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGD   51 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC
Confidence            67999999988 7899999999999999999999999999998887653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.94  E-value=0.00035  Score=62.78  Aligned_cols=74  Identities=19%  Similarity=0.143  Sum_probs=52.3

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh-hhhhcc-cccceEEEEeecccccC-CceEEEE
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS-WLLLNT-LLFDSVIVIRILLFTWH-LKFFIAA  455 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~-~~~~~~-~~~~~~~v~~~l~~~~~-~~~~i~~  455 (493)
                      +++.|||+|.+|.|++..|++.|.+|+++.|+.+.++.+.+.-. ...++. ...+++.+-.++++... .|..|++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiia   84 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV   84 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEc
Confidence            57999999999999999999999999999999999988876432 222221 12246777666664331 3444444

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.94  E-value=0.00049  Score=65.21  Aligned_cols=50  Identities=22%  Similarity=0.257  Sum_probs=45.2

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      |+||.++|-|+ +|.|++++..|++.|++|++.+|+.++.+++++++....
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~   52 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG   52 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            57999999988 779999999999999999999999999999998876543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.92  E-value=0.00048  Score=65.14  Aligned_cols=49  Identities=20%  Similarity=0.277  Sum_probs=44.9

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      |+||.+||.|+ +|.|++++..|++.|++|++++|+.++.+++++.+...
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~   52 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKS   52 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc
Confidence            67999999987 78999999999999999999999999999999887654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.89  E-value=0.0012  Score=61.74  Aligned_cols=86  Identities=17%  Similarity=0.154  Sum_probs=58.5

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHhhhhhhc-------ccccceE-EEEeecccc
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYGESLTFLRLMSWLLLN-------TLLFDSV-IVIRILLFT  446 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~-~R~~~~a~~la~~~~~~~~~-------~~~~~~~-~v~~~l~~~  446 (493)
                      .+|+||.|||-|+ +|.|++++..|++.|++|++. +|+.+.++++++.++.....       -...+.+ ..+....+.
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence            4688999999987 779999999999999988874 67777788888877654421       0000000 001112244


Q ss_pred             cCCceEEEEeccccCCc
Q 011136          447 WHLKFFIAANIIHLGNH  463 (493)
Q Consensus       447 ~~~~~~i~~n~tplG~~  463 (493)
                      | ...++++|..+....
T Consensus        82 ~-g~idilinnag~~~~   97 (259)
T d1ja9a_          82 F-GGLDFVMSNSGMEVW   97 (259)
T ss_dssp             H-SCEEEEECCCCCCCC
T ss_pred             c-CCCcEEEeccccccc
Confidence            5 568999998887644

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.87  E-value=0.00056  Score=63.94  Aligned_cols=48  Identities=27%  Similarity=0.342  Sum_probs=44.2

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      |+||.+||-|+ +|.|++++..|++.|++|++++|+.++.+++++.+..
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~   52 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT   52 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC
Confidence            78999999986 7899999999999999999999999999999988753

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.87  E-value=0.0014  Score=55.93  Aligned_cols=40  Identities=23%  Similarity=0.218  Sum_probs=35.4

Q ss_pred             CCCEEEEEe-cchHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       380 ~~~~vlvlG-aGGaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      .-+++.||| .|-||++++..|.+.|++|++++|+.....+
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~   48 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE   48 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc
Confidence            347899999 8999999999999999999999998766544

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.87  E-value=0.00041  Score=60.33  Aligned_cols=41  Identities=20%  Similarity=0.238  Sum_probs=38.1

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      +|-|||.|-||++++..|.+.|++|+++||+.++++++.+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~   42 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA   42 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHh
Confidence            58899999999999999999999999999999999988763

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.87  E-value=0.0021  Score=56.38  Aligned_cols=44  Identities=34%  Similarity=0.455  Sum_probs=40.4

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      ++-|||.|-||.+++..|.+.|++|+++||++++++++.+....
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~   46 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANAS   46 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTT
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCc
Confidence            47899999999999999999999999999999999999887543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.86  E-value=0.00062  Score=63.97  Aligned_cols=50  Identities=24%  Similarity=0.232  Sum_probs=45.1

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      |+||.+||-|+ +|.|++++..|++.|++|++.+|+.++.+++++++....
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~   53 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG   53 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            57899999987 789999999999999999999999999999998876543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.85  E-value=0.00055  Score=64.21  Aligned_cols=50  Identities=22%  Similarity=0.346  Sum_probs=44.5

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++||.+||-|+ +|.|++++..|++.|++|++++|+.++.+++++++..
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~   55 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGK   55 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
Confidence            5688999999988 6799999999999999999999999998888776643

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.83  E-value=0.00077  Score=58.12  Aligned_cols=45  Identities=18%  Similarity=0.257  Sum_probs=41.0

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      ++.+||+|-||.+++..|.+.|.++++++|+.++.+++++.++..
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~   46 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALP   46 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCC
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccccee
Confidence            578999999999999999998999999999999999998877643

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.82  E-value=0.0006  Score=63.85  Aligned_cols=48  Identities=21%  Similarity=0.284  Sum_probs=44.2

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      |+||.+||-|+ +|.|++++..|++.|++|++.+|+.++.++++++++.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~   52 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGE   52 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC
Confidence            78999999986 7899999999999999999999999999999988764

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.82  E-value=0.00078  Score=62.63  Aligned_cols=82  Identities=18%  Similarity=0.060  Sum_probs=56.3

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhh--cccccceE-EEEeecccccCCceEEE
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLL--NTLLFDSV-IVIRILLFTWHLKFFIA  454 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~--~~~~~~~~-~v~~~l~~~~~~~~~i~  454 (493)
                      ++||.+||-|+ +|.|++++..|++.|++|++.+|+.++.+++++.++...+  +-...+.+ ..+....+.| ...+++
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iDil   81 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHL-GRLDGV   81 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHH-SSCCEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhc-CCceEE
Confidence            67899999987 7899999999999999999999999999999886653321  10000011 0111122444 457888


Q ss_pred             EeccccC
Q 011136          455 ANIIHLG  461 (493)
Q Consensus       455 ~n~tplG  461 (493)
                      +|.-...
T Consensus        82 VnnAG~~   88 (242)
T d1ulsa_          82 VHYAGIT   88 (242)
T ss_dssp             EECCCCC
T ss_pred             EECCccc
Confidence            8865543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.82  E-value=0.00073  Score=62.73  Aligned_cols=47  Identities=28%  Similarity=0.323  Sum_probs=43.2

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      |+||.+||.|+ +|.|++++..|++.|++|++..|+.++.+++.++++
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   50 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE   50 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC
Confidence            67999999988 669999999999999999999999999988888765

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.80  E-value=0.00072  Score=59.61  Aligned_cols=42  Identities=26%  Similarity=0.261  Sum_probs=39.3

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      ++|-+||-|-||.+++..|.+.|++|+++||++++++++.+.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~   44 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN   44 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHh
Confidence            468999999999999999999999999999999999999774

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.77  E-value=0.0031  Score=54.08  Aligned_cols=77  Identities=14%  Similarity=0.062  Sum_probs=54.2

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      ++|+.|||+|.+|.++++.|...|.  +|.++++++++++..+.++.....  .....+.+...-.+.. .+.++++.+.
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~--~~~~~~~~~~~d~~~l-~daDvvvita   82 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKV--FAPKPVDIWHGDYDDC-RDADLVVICA   82 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTT--SSSSCCEEEECCGGGT-TTCSEEEECC
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCcc--ccCCCeEEEECCHHHh-ccceeEEEec
Confidence            6799999999999999999999884  899999999999988887765431  1112333333222333 5566776554


Q ss_pred             cc
Q 011136          459 HL  460 (493)
Q Consensus       459 pl  460 (493)
                      ..
T Consensus        83 g~   84 (148)
T d1ldna1          83 GA   84 (148)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=96.75  E-value=0.0016  Score=60.25  Aligned_cols=87  Identities=17%  Similarity=0.139  Sum_probs=65.8

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccc
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLL  433 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~  433 (493)
                      +.|...+++..+....+     ..+++|++|+|-|.|.+|+.++..|.+.|++|++++.+..+.+.+....+...     
T Consensus        17 g~GV~~~~~~~~~~~~g-----~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~-----   86 (230)
T d1leha1          17 AYGVYRGMKAAAKEAFG-----SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADA-----   86 (230)
T ss_dssp             HHHHHHHHHHHHHHHHS-----SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEE-----
T ss_pred             HHHHHHHHHHHHHHhcC-----CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcc-----
Confidence            56777766654321100     14689999999999999999999999999999999999988887777655332     


Q ss_pred             cceEEEEeecccccCCceEEEEec
Q 011136          434 FDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       434 ~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                             .+.++-|..+.+|++||
T Consensus        87 -------~~~~~~~~~~cDIl~Pc  103 (230)
T d1leha1          87 -------VAPNAIYGVTCDIFAPC  103 (230)
T ss_dssp             -------CCGGGTTTCCCSEEEEC
T ss_pred             -------cCCcccccccccEeccc
Confidence                   23456787888999854

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.74  E-value=0.0075  Score=51.57  Aligned_cols=77  Identities=12%  Similarity=0.003  Sum_probs=53.8

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      .+|+.|||+|.+|.++++.|+..|.  +|+++++++++++..+.++...... . ......-.+.+ .. .+.+|++-+.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~-~-~~~~~~~~d~~-~~-~~adivvita   80 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAF-T-APKKIYSGEYS-DC-KDADLVVITA   80 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGG-S-CCCEEEECCGG-GG-TTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccc-c-CCceEeeccHH-Hh-ccccEEEEec
Confidence            4689999999999999999999884  9999999999999888877654421 1 12222222332 22 5566777665


Q ss_pred             ccC
Q 011136          459 HLG  461 (493)
Q Consensus       459 plG  461 (493)
                      +..
T Consensus        81 g~~   83 (146)
T d1ez4a1          81 GAP   83 (146)
T ss_dssp             CC-
T ss_pred             ccc
Confidence            443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.67  E-value=0.0015  Score=57.57  Aligned_cols=45  Identities=29%  Similarity=0.321  Sum_probs=39.2

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|.+|+|+|+||+|..++..++..|+ +|++++++.+|. +++++++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~-~~a~~lG   72 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICV-EAAKFYG   72 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHH-HHHHHHT
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhH-HHHHhhC
Confidence            47789999999999999999999998 899999998884 5666666

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.66  E-value=0.0011  Score=61.63  Aligned_cols=57  Identities=26%  Similarity=0.371  Sum_probs=45.4

Q ss_pred             EEEeccHHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          348 FGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       348 ~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      +..|-|+..++...+..+.          ..-+.|+|+|||||-+|.++|+.|++.|++|+|+.++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~----------~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1           7 CFQENDYEEFLEIARNGLK----------ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             GGCCTTHHHHHHHHHHCSC----------CCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             hcCCccHHHHHHHHhcCCC----------CCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3457788888777665443          12346899999999999999999999999999998753

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.65  E-value=0.00073  Score=61.53  Aligned_cols=33  Identities=39%  Similarity=0.498  Sum_probs=31.0

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      +|||+|||||.+|.++|+.|++.|++|+|+.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            589999999999999999999999999999874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0014  Score=61.05  Aligned_cols=48  Identities=27%  Similarity=0.367  Sum_probs=43.3

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      +||.+||-|+ +|.|++++..|++.|++|++++|+.++.+++++.+...
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~   50 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ   50 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh
Confidence            4899999988 78999999999999999999999999999998877543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.65  E-value=0.001  Score=57.84  Aligned_cols=45  Identities=33%  Similarity=0.341  Sum_probs=38.9

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|.+|+|+|+|++|..++..++..|++|+++.++.+|. ++++.++
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~-~~a~~~g   70 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRL-EVAKNCG   70 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHTT
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHH-HHHHHcC
Confidence            47799999999999999999999999999999999986 4555554

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.63  E-value=0.0013  Score=53.68  Aligned_cols=40  Identities=20%  Similarity=0.277  Sum_probs=36.2

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      .+++||+|+|+|+|.+|.+-+..|.+.|++|+|++.+...
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~   47 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIP   47 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCH
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCh
Confidence            4678999999999999999999999999999999887654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.63  E-value=0.0013  Score=61.90  Aligned_cols=53  Identities=23%  Similarity=0.344  Sum_probs=44.4

Q ss_pred             ccccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHhhhhh
Q 011136          376 SSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-YGESLTFLRLMSWLL  428 (493)
Q Consensus       376 ~~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~-~~~a~~la~~~~~~~  428 (493)
                      ...|+||.+||-|+ +|.|++++..|++.|++|++..|+ .+.++++++.+....
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g   67 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG   67 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC
Confidence            45689999999996 889999999999999999998765 677788887766544

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.56  E-value=0.003  Score=58.82  Aligned_cols=45  Identities=27%  Similarity=0.242  Sum_probs=39.7

Q ss_pred             EEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          384 FVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       384 vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      +||-|+ +|.|++++..|++.|++|++.+|+.++++++++++....
T Consensus         4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g   49 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG   49 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             EEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            567776 789999999999999999999999999999998886543

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00058  Score=63.59  Aligned_cols=46  Identities=24%  Similarity=0.373  Sum_probs=40.8

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      |+||.+||-|+ +|.|++++..|++.|++|++++|+.++.+++++..
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~   50 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYP   50 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGST
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcc
Confidence            77999999987 78999999999999999999999998888776543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0021  Score=57.61  Aligned_cols=42  Identities=31%  Similarity=0.281  Sum_probs=37.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      |+|.|||+|-||+++++.++..|++|++++++++..++..+.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~   46 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKG   46 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhh
Confidence            689999999999999999999999999999998766655443

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.001  Score=58.11  Aligned_cols=46  Identities=28%  Similarity=0.273  Sum_probs=40.1

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .|.+|+|+|+|++|..++..++..|+ +|++++++.+|.+ ++++++.
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~-~a~~~Ga   72 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLS-KAKEIGA   72 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH-HHHHTTC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHH-HHHHhCC
Confidence            47799999999999999999999999 8999999988865 6677664

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.48  E-value=0.0076  Score=51.53  Aligned_cols=47  Identities=21%  Similarity=0.207  Sum_probs=41.7

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      ||+.|||+|..|.++++.|...|.  +|.+++++.++++..+.++....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~   50 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM   50 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccc
Confidence            789999999999999999999884  99999999999998887776543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.47  E-value=0.0017  Score=60.94  Aligned_cols=52  Identities=29%  Similarity=0.416  Sum_probs=43.9

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHhhhhh
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY-GESLTFLRLMSWLL  428 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~-~~a~~la~~~~~~~  428 (493)
                      .+|+||.++|-|+ +|.|++++..|++.|++|++..|+. ++++++++.+....
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g   56 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG   56 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC
Confidence            3588999999986 7899999999999999999999985 57788887776543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.47  E-value=0.0019  Score=59.50  Aligned_cols=74  Identities=22%  Similarity=0.062  Sum_probs=50.7

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                      ++||++||-|+ +|.|++++..|++.|++|++.+|+.++.++....+-...+   ..+    ++...+.+ .+.++++|.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv---~~~----~~~~~~~~-g~iD~lVnn   73 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDL---RKD----LDLLFEKV-KEVDILVLN   73 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCT---TTC----HHHHHHHS-CCCSEEEEC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcch---HHH----HHHHHHHh-CCCcEEEec
Confidence            67999999997 7899999999999999999999998776654332211111   000    12222445 557788876


Q ss_pred             ccc
Q 011136          458 IHL  460 (493)
Q Consensus       458 tpl  460 (493)
                      -..
T Consensus        74 AG~   76 (234)
T d1o5ia_          74 AGG   76 (234)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            543

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.46  E-value=0.004  Score=53.93  Aligned_cols=89  Identities=10%  Similarity=-0.082  Sum_probs=58.8

Q ss_pred             EEEEEecchHHHH-HHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          383 LFVVIGAGGAGKA-LAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       383 ~vlvlGaGGaara-~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      ++.|||+|+.|+. .+.+|...+. ++.+++++.++++.+++.++....-          .+.++-..++.++++-+||-
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----------~~~~~ll~~~iD~V~I~tp~   72 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATC----------TDYRDVLQYGVDAVMIHAAT   72 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCC----------SSTTGGGGGCCSEEEECSCG
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccccccc----------ccHHHhcccccceecccccc
Confidence            6899999999965 5667777655 8899999999999999988753210          11111111345566667887


Q ss_pred             CCchhhHhhhhhHHHHhhccceEeeec
Q 011136          461 GNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       461 G~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ..|.+....     ... .+-.|++||
T Consensus        73 ~~H~~~~~~-----al~-~gk~V~~EK   93 (167)
T d1xeaa1          73 DVHSTLAAF-----FLH-LGIPTFVDK   93 (167)
T ss_dssp             GGHHHHHHH-----HHH-TTCCEEEES
T ss_pred             ccccccccc-----ccc-cccccccCC
Confidence            777776642     222 233467776

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.0097  Score=51.64  Aligned_cols=79  Identities=14%  Similarity=0.011  Sum_probs=56.1

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      .+..|+.|||+|..|.++++.|...|.  +|.+++++.++++..+.++..... ......+..-.+. +.. .+.+|++.
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~-~~~~~~~~~~~d~-~~~-~~adivvi   93 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSL-FLSTPKIVFGKDY-NVS-ANSKLVII   93 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTT-TCSCCEEEEESSG-GGG-TTEEEEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcch-hcCCCeEEeccch-hhh-ccccEEEE
Confidence            445689999999999999999999985  899999999999988888875431 1122222222222 233 67778876


Q ss_pred             cccc
Q 011136          457 IIHL  460 (493)
Q Consensus       457 ~tpl  460 (493)
                      +...
T Consensus        94 tag~   97 (159)
T d2ldxa1          94 TAGA   97 (159)
T ss_dssp             CCSC
T ss_pred             eccc
Confidence            6554

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.45  E-value=0.0019  Score=57.05  Aligned_cols=33  Identities=27%  Similarity=0.467  Sum_probs=30.4

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      +|.|||+|.+|.|++..|++.|.+|++++|+.+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~   34 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFD   34 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            689999999999999999999999999999644

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.37  E-value=0.0072  Score=51.96  Aligned_cols=80  Identities=13%  Similarity=-0.044  Sum_probs=55.0

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeec-ccccCCceEEEEecc
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRIL-LFTWHLKFFIAANII  458 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l-~~~~~~~~~i~~n~t  458 (493)
                      ..|+.|||+|..|.++++.|...+. ++.+++++.++++..+.++......  ..-+..+..+- .+.. .+.++++-+.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~--~~~~~~v~~~~~~~~~-~~advvvita   79 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVM--AYSNCKVSGSNTYDDL-AGADVVIVTA   79 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHH--HTCCCCEEEECCGGGG-TTCSEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccc--cCCCcEEEeccccccc-CCCcEEEEec
Confidence            3589999999999999999988888 9999999999999998887765321  11122222221 1222 5566777666


Q ss_pred             ccCCc
Q 011136          459 HLGNH  463 (493)
Q Consensus       459 plG~~  463 (493)
                      ...-.
T Consensus        80 g~~~~   84 (150)
T d1t2da1          80 GFTKA   84 (150)
T ss_dssp             SCSSC
T ss_pred             ccccC
Confidence            55443

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.37  E-value=0.0024  Score=59.63  Aligned_cols=37  Identities=19%  Similarity=0.262  Sum_probs=33.7

Q ss_pred             cCCCEEEEEec-c--hHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          379 LAGKLFVVIGA-G--GAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       379 l~~~~vlvlGa-G--Gaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      |+||++||.|+ |  |.|+|++.+|++.|++|++++|+.+
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            67999999997 4  7999999999999999999999853

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.36  E-value=0.0029  Score=52.75  Aligned_cols=43  Identities=19%  Similarity=0.251  Sum_probs=40.2

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|+|+|+|..|+.++..|.+.|.+|+++++++++.+++++.++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~   44 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID   44 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhh
Confidence            6899999999999999999999999999999999999987654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.36  E-value=0.0094  Score=51.78  Aligned_cols=50  Identities=14%  Similarity=0.106  Sum_probs=44.4

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      ...+|+.|||+|.+|.++++.|...|.  +|.+++++.++++..+.++....
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~   69 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGS   69 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTG
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccc
Confidence            456799999999999999999999995  89999999999999888887543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0019  Score=57.35  Aligned_cols=36  Identities=36%  Similarity=0.504  Sum_probs=33.5

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      ..+|+|+|||+|.+|.++|..|++.|++|+|+.++.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            457899999999999999999999999999999864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.34  E-value=0.0014  Score=60.85  Aligned_cols=48  Identities=21%  Similarity=0.194  Sum_probs=39.4

Q ss_pred             ccCCCEEEEEec-c--hHHHHHHHHHHhCCCeEEEEeCChHHH-HHHHHHhh
Q 011136          378 ALAGKLFVVIGA-G--GAGKALAYGAKAKGARVVIANRTYGES-LTFLRLMS  425 (493)
Q Consensus       378 ~l~~~~vlvlGa-G--Gaara~~~~L~~~g~~i~v~~R~~~~a-~~la~~~~  425 (493)
                      -++||++||.|| |  |.|++++..|++.|++|++.+|+.++. +++++.++
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~   54 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLP   54 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcC
Confidence            367999999996 4  599999999999999999999998775 44555443

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.30  E-value=0.00098  Score=56.94  Aligned_cols=43  Identities=12%  Similarity=0.062  Sum_probs=33.6

Q ss_pred             EEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          385 VVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       385 lvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      =+||+|-||++++..|.+.+..+.|+||+.+++++|++.....
T Consensus         3 gfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~   45 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGK   45 (153)
T ss_dssp             EEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCC
T ss_pred             EEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhccccc
Confidence            3789999999999988664334578999999999999977643

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.29  E-value=0.0023  Score=59.71  Aligned_cols=48  Identities=29%  Similarity=0.338  Sum_probs=40.5

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHhhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT-YGESLTFLRLMSW  426 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~-~~~a~~la~~~~~  426 (493)
                      |+||.+||-|+ +|.|++++..|++.|++|++..|+ .++++++++.+..
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~   51 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAA   51 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHH
Confidence            56899998877 779999999999999999999996 5677777776543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.27  E-value=0.0016  Score=57.48  Aligned_cols=48  Identities=25%  Similarity=0.329  Sum_probs=42.0

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      +|.+|+|+|+||.|..++..++..|+ +|++++++.+|. ++|++++-..
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl-~~Ak~~GA~~   77 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKF-EKAMAVGATE   77 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHHTCSE
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHH-HHHHhcCCcE
Confidence            47899999999999999999999998 999999999986 4777776543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.0016  Score=55.81  Aligned_cols=36  Identities=19%  Similarity=0.118  Sum_probs=33.0

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESL  418 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~  418 (493)
                      |++|||+|.+|.+++..|++.|++|++++|+.++.+
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~   37 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYC   37 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhh
Confidence            689999999999999999999999999999876554

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.21  E-value=0.0085  Score=50.88  Aligned_cols=47  Identities=23%  Similarity=0.093  Sum_probs=41.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhhh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      +|+.|||+|..|.++++.|+..+. ++.+++++.++++..+.++....
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~   49 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEAS   49 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccc
Confidence            589999999999999999998887 99999999999988888776443

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.14  E-value=0.0019  Score=56.49  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=31.9

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYG  415 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~  415 (493)
                      +|||+|||+|.+|..+|..|+++|+ +|+|+.|...
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            6899999999999999999999999 6999998643

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.14  E-value=0.002  Score=56.80  Aligned_cols=47  Identities=21%  Similarity=0.279  Sum_probs=41.4

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      .|.+|+|+|+||.|..++..++..|+ +|++++++.+|. +++++++..
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~-~~a~~~Ga~   75 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAKALGAT   75 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH-HHHHHhCCC
Confidence            47899999999999999999999999 899999999885 777877643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.04  E-value=0.0046  Score=57.24  Aligned_cols=43  Identities=28%  Similarity=0.306  Sum_probs=37.0

Q ss_pred             cccCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          377 SALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       377 ~~l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      .+++||.+||-||+   |.|++++..|++.|++|++..|+.+..+.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~   49 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPE   49 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence            46899999999984   79999999999999999999998654433

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.04  E-value=0.013  Score=49.84  Aligned_cols=46  Identities=11%  Similarity=0.094  Sum_probs=40.3

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      |+.|||+|..|.++++.|+..|.  +|.+++++.++++..+.+++...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~   49 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAA   49 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhc
Confidence            68899999999999999998884  89999999999988877776543

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.03  E-value=0.036  Score=46.93  Aligned_cols=46  Identities=26%  Similarity=0.354  Sum_probs=41.0

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      .|+.|||+|..|.++++.|...|.  +|.++++++++++..+.++...
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a   49 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHG   49 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhc
Confidence            479999999999999999999995  8999999999998887777654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.02  E-value=0.015  Score=49.23  Aligned_cols=74  Identities=9%  Similarity=-0.072  Sum_probs=52.2

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      |+.|||+|..|.++++.|+..+.  +|.++++++++++..+.++..... -..  .+.+.....+.. .+.++++-+...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~-~~~--~~~~~~~~~~~~-~~adivvitag~   77 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FTR--RANIYAGDYADL-KGSDVVIVAAGV   77 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GSC--CCEEEECCGGGG-TTCSEEEECCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccc-ccc--cccccCCcHHHh-cCCCEEEEeccc
Confidence            68899999999999999988884  999999999999888777665431 111  223333322333 566777766555

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.011  Score=51.51  Aligned_cols=43  Identities=37%  Similarity=0.469  Sum_probs=39.3

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      ..+.||+++|+|.|-.||.+|..|+..|++|.|+++++-++-+
T Consensus        20 ~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~   62 (163)
T d1li4a1          20 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQ   62 (163)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             ceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHH
Confidence            5688999999999999999999999999999999999877543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.00  E-value=0.0069  Score=57.91  Aligned_cols=85  Identities=19%  Similarity=0.218  Sum_probs=55.6

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEe---------CChHHHHHHHHHhhhhhhc----ccccce-EEEEe
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN---------RTYGESLTFLRLMSWLLLN----TLLFDS-VIVIR  441 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~---------R~~~~a~~la~~~~~~~~~----~~~~~~-~~v~~  441 (493)
                      ..|+||.+||-|+ +|.|++++..|++.|++|++.+         |+.++++++++.++.....    ....+. -.++.
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~   82 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVK   82 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHH
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHH
Confidence            3578999999988 6799999999999999999975         4567788888776644321    000000 00111


Q ss_pred             ecccccCCceEEEEeccccCC
Q 011136          442 ILLFTWHLKFFIAANIIHLGN  462 (493)
Q Consensus       442 ~l~~~~~~~~~i~~n~tplG~  462 (493)
                      ...+.| ...+|++|.-.+..
T Consensus        83 ~~~~~~-G~iDiLVnNAGi~~  102 (302)
T d1gz6a_          83 TALDTF-GRIDVVVNNAGILR  102 (302)
T ss_dssp             HHHHHT-SCCCEEEECCCCCC
T ss_pred             HHHHHc-CCCCEEEECCccCC
Confidence            111345 56788888765543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.97  E-value=0.0043  Score=55.11  Aligned_cols=41  Identities=27%  Similarity=0.337  Sum_probs=36.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++|.|||+|=||++++..++..|++|++++++.+..++..+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~   45 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLA   45 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhh
Confidence            67999999999999999999999999999999877655433

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.97  E-value=0.0034  Score=56.49  Aligned_cols=33  Identities=36%  Similarity=0.356  Sum_probs=31.0

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      .|+|+|||||-+|.++|+.|++.|.+|+|+.|.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            468999999999999999999999999999984

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.97  E-value=0.0023  Score=53.20  Aligned_cols=42  Identities=21%  Similarity=0.302  Sum_probs=38.7

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      |+++|+|+|-.|+.++..|.+.|.++++++.++++++++.+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~   42 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY   42 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh
Confidence            578999999999999999999999999999999999988653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.93  E-value=0.01  Score=51.56  Aligned_cols=44  Identities=32%  Similarity=0.379  Sum_probs=39.8

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTF  420 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~l  420 (493)
                      .-+.||+++|+|.|-.||.+|..|+..|++|+|+.+++-+|-+-
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA   62 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA   62 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH
Confidence            56789999999999999999999999999999999999775443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.0063  Score=52.72  Aligned_cols=45  Identities=27%  Similarity=0.298  Sum_probs=38.6

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|.+++|+|+|++|..++..++..|++|++++++.+|.+ ++++++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~-~a~~lG   71 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKRE-DAMKMG   71 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHH-HHHHHT
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHH-HhhccC
Confidence            478999999999999999988889999999999988875 455555

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.92  E-value=0.0058  Score=53.55  Aligned_cols=45  Identities=27%  Similarity=0.282  Sum_probs=39.6

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|.+|+|+|+|++|..++..++..|+ +|++++++++|.+ ++++++
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~-~a~~lG   73 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLK-LAEEIG   73 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHH-HHHHTT
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccccccccc-cccccc
Confidence            47899999999999999999999998 8999999998874 556665

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.91  E-value=0.0026  Score=55.91  Aligned_cols=48  Identities=25%  Similarity=0.286  Sum_probs=40.8

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      -.|.+|+|+|+||.+..++..++..|+ +|++++++.+|. +++++++..
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl-~~a~~lGa~   74 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF-PKAIELGAT   74 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHTTCS
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHH-HHHHHcCCc
Confidence            357899999999999999999999998 999999998886 556666643

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.91  E-value=0.018  Score=48.56  Aligned_cols=45  Identities=24%  Similarity=0.190  Sum_probs=38.8

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      |+.|+|||..|.++++.|+..|.  +|.++++++++++..+..+...
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~   48 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYES   48 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTT
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcc
Confidence            68999999999999999999984  9999999999888776655443

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.86  E-value=0.0045  Score=57.47  Aligned_cols=50  Identities=22%  Similarity=0.254  Sum_probs=43.3

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHh---CCCeEEEEeCChHHHHHHHHHhhhh
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKA---KGARVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~---~g~~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      .++||.++|-|+ +|.|++++..|++   .|++|++++|+.++.+++++++...
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~   56 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQ   56 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhh
Confidence            577888877787 6899999999986   5889999999999999999887654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=95.85  E-value=0.0058  Score=56.67  Aligned_cols=46  Identities=26%  Similarity=0.346  Sum_probs=39.3

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      |+||.+||-|+ +|.|++++..|++.|++|++.+|+.++ .++++..+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~-~~~~~~~~   49 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIG   49 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHT
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH-HHHHHHcC
Confidence            67999999986 789999999999999999999999765 45555544

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.85  E-value=0.022  Score=48.46  Aligned_cols=46  Identities=22%  Similarity=0.151  Sum_probs=38.2

Q ss_pred             EEEEEec-chHHHHHHHHHHhCCC--eEEEEeCCh--HHHHHHHHHhhhhh
Q 011136          383 LFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTY--GESLTFLRLMSWLL  428 (493)
Q Consensus       383 ~vlvlGa-GGaara~~~~L~~~g~--~i~v~~R~~--~~a~~la~~~~~~~  428 (493)
                      |+.|+|| |..|.++++.|+..|.  ++.+++++.  ++++.++.++....
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~   52 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL   52 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcc
Confidence            6899996 9999999999999994  999999876  56677777776543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.84  E-value=0.012  Score=50.49  Aligned_cols=45  Identities=22%  Similarity=0.312  Sum_probs=38.9

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|.+|+|+|+|++|.+++..++..|++|++++++++|.+ ++++++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~-~a~~~G   71 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLE-LARKLG   71 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHTT
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHH-hhhccC
Confidence            478999999999999999999999999999999988864 555555

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=95.81  E-value=0.007  Score=56.00  Aligned_cols=46  Identities=33%  Similarity=0.456  Sum_probs=37.5

Q ss_pred             cCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHh
Q 011136          379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG-ESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~-~a~~la~~~  424 (493)
                      |+||.++|-|+ +|.|++++..|++.|++|++.+|+.+ .++++.+..
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~   50 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL   50 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHc
Confidence            67999999988 78999999999999999999999763 344444443

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.79  E-value=0.018  Score=51.31  Aligned_cols=46  Identities=26%  Similarity=0.339  Sum_probs=38.9

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .|.+|+|+|+|+.|..++..++..|+ +|++++++++|. ++++.++.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl-~~a~~~Ga   71 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKAQGF   71 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHTTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhh-Hhhhhccc
Confidence            47899999999999999888888998 999999998886 45566653

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.73  E-value=0.013  Score=51.22  Aligned_cols=92  Identities=13%  Similarity=0.104  Sum_probs=59.3

Q ss_pred             EEEEEecchHHHHHHHHHHhCC-CeEE-EEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccccc-CCceEEEEeccc
Q 011136          383 LFVVIGAGGAGKALAYGAKAKG-ARVV-IANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTW-HLKFFIAANIIH  459 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g-~~i~-v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~i~~n~tp  459 (493)
                      ++.|||+|.+|+..+.++.... ++|+ |++|+.++++++++.++...       ..++..+.++-. .++.++++-+||
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ll~~~~iD~v~I~tp   75 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPE-------STKIHGSYESLLEDPEIDALYVPLP   75 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCT-------TCEEESSHHHHHHCTTCCEEEECCC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcccccc-------ceeecCcHHHhhhccccceeeeccc
Confidence            6899999999999998898774 5655 88999999999998776432       112222322100 134566666777


Q ss_pred             cCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          460 LGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       460 lG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      -..|.+...     .... .+-.|++||
T Consensus        76 ~~~h~~~~~-----~~l~-~g~~v~~EK   97 (184)
T d1ydwa1          76 TSLHVEWAI-----KAAE-KGKHILLEK   97 (184)
T ss_dssp             GGGHHHHHH-----HHHT-TTCEEEECS
T ss_pred             chhhcchhh-----hhhh-ccceeeccc
Confidence            777765543     2222 344566776

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0061  Score=57.06  Aligned_cols=48  Identities=17%  Similarity=0.172  Sum_probs=41.8

Q ss_pred             CCEEEEE--ecchHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhhhhh
Q 011136          381 GKLFVVI--GAGGAGKALAYGAKAK-GARVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvl--GaGGaara~~~~L~~~-g~~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      ||+|.||  |++|.|++++..|++. |++|++++|+.++++++++++....
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~   52 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG   52 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            6888777  6689999999999886 6799999999999999999887554

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0061  Score=56.12  Aligned_cols=44  Identities=18%  Similarity=0.218  Sum_probs=36.7

Q ss_pred             cCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          379 LAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       379 l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      |+||++||-|++   |.|++++..|++.|++|++..|+.+..+.+.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~   49 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE   49 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            679999999874   69999999999999999999998655444433

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.65  E-value=0.005  Score=57.31  Aligned_cols=45  Identities=13%  Similarity=0.194  Sum_probs=37.8

Q ss_pred             ccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       378 ~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      +++||.|||-|+ +|.|++++..|++.|++++++.|+.++.+++++
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~   47 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAE   47 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHH
Confidence            467999999988 689999999999999998888887666655544

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.65  E-value=0.0059  Score=57.34  Aligned_cols=43  Identities=26%  Similarity=0.319  Sum_probs=37.5

Q ss_pred             cccCCCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          377 SALAGKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       377 ~~l~~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      .+++||++||-|++   |.|++++..|++.|++|++.+|+......
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~   49 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIF   49 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhh
Confidence            57899999999985   89999999999999999999997654433

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.64  E-value=0.013  Score=51.13  Aligned_cols=99  Identities=16%  Similarity=0.042  Sum_probs=65.8

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      .+..+|+|||+|-+|+.++...+.+|++|++++++.++.+++...+....- ....+.    ..+++.. .+.+|++.+.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~-~~~~~~----~~l~~~~-~~aDivI~aa  103 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVE-LLYSNS----AEIETAV-AEADLLIGAV  103 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSE-EEECCH----HHHHHHH-HTCSEEEECC
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccce-eehhhh----hhHHHhh-ccCcEEEEee
Confidence            356799999999999999999999999999999999999988776653220 000000    1222333 5577888775


Q ss_pred             c--cCCchhhHhhhhhHHHHhhccceEeee
Q 011136          459 H--LGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       459 p--lG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      -  =...|..++.   +....+-++-|++|
T Consensus       104 lipG~~aP~lIt~---~mv~~Mk~GSVIVD  130 (168)
T d1pjca1         104 LVPGRRAPILVPA---SLVEQMRTGSVIVD  130 (168)
T ss_dssp             CCTTSSCCCCBCH---HHHTTSCTTCEEEE
T ss_pred             ecCCcccCeeecH---HHHhhcCCCcEEEE
Confidence            4  2333555542   22334456777777

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.59  E-value=0.0048  Score=53.86  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=38.5

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .|.+|+|+|+|++|.+++..++..|+ .|++++++++|.+ ++++++.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~-~a~~~Ga   74 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLE-LAKQLGA   74 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHH-HHHHHTC
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHH-HHHHcCC
Confidence            47899999999999999999988998 8888999988764 4566664

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.58  E-value=0.013  Score=49.66  Aligned_cols=46  Identities=15%  Similarity=0.164  Sum_probs=37.9

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhhhh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      +|+.|||+|..|.++++.|...|.  +|++++++.++++..+.++...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~   49 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG   49 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccC
Confidence            479999999999999999999985  8999999999988888877753

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.52  E-value=0.0058  Score=55.52  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.5

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .+||+|||||.+|.++|..|++.|++|+|+.|+.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999853

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.51  E-value=0.021  Score=48.72  Aligned_cols=90  Identities=12%  Similarity=0.055  Sum_probs=59.3

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccccCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHLGN  462 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tplG~  462 (493)
                      |+-+||.|-||.+++..|.+.|. ++++||+.++++++++.........         ...     .+.++++-..|   
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~i~~~~---   63 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP-TLVWNRTFEKALRHQEEFGSEAVPL---------ERV-----AEARVIFTCLP---   63 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC-EEEECSSTHHHHHHHHHHCCEECCG---------GGG-----GGCSEEEECCS---
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC-EEEEeCCHHHHHHHHHHcCCccccc---------ccc-----cceeEEEeccc---
Confidence            58899999999999999998876 4589999999999988765332110         111     11222222222   


Q ss_pred             chhhHhhhhhHHHHhhccceEeeecccc
Q 011136          463 HLEWVTAAFNLFFYLTCNSYVVMEKTEI  490 (493)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (493)
                      .++.+....+..+....++.++.|-+-+
T Consensus        64 ~~~~v~~~~~~l~~~~~~~~~iid~sT~   91 (156)
T d2cvza2          64 TTREVYEVAEALYPYLREGTYWVDATSG   91 (156)
T ss_dssp             SHHHHHHHHHHHTTTCCTTEEEEECSCC
T ss_pred             chhhhhhhhccccccccccccccccccC
Confidence            2445555566666667888888886643

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.46  E-value=0.0023  Score=59.09  Aligned_cols=42  Identities=26%  Similarity=0.434  Sum_probs=37.1

Q ss_pred             cccCCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 011136          377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESL  418 (493)
Q Consensus       377 ~~l~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~  418 (493)
                      .+|+||++||-|+ +|.|++++..|++.|++|++++|+.++.+
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~   45 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK   45 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence            3689999999988 67999999999999999999999876544

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.36  E-value=0.0057  Score=53.01  Aligned_cols=47  Identities=26%  Similarity=0.386  Sum_probs=39.9

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      .|.+|+|.|+||.+..++..++..|+ +|+++.++++|. +++++++..
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~-~~ak~lGa~   75 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF-ARAKEFGAT   75 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHHTCS
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHH-HHHHHhCCc
Confidence            47899999999999999999999998 898899988885 567777643

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.32  E-value=0.019  Score=52.67  Aligned_cols=81  Identities=19%  Similarity=0.144  Sum_probs=53.1

Q ss_pred             CE-EEEEec-chHHHHHHHHHHhCCCe-------EEEEeCChHHHHHHHHHhhhhhhcc--cccc-----eE-EEEeecc
Q 011136          382 KL-FVVIGA-GGAGKALAYGAKAKGAR-------VVIANRTYGESLTFLRLMSWLLLNT--LLFD-----SV-IVIRILL  444 (493)
Q Consensus       382 ~~-vlvlGa-GGaara~~~~L~~~g~~-------i~v~~R~~~~a~~la~~~~~~~~~~--~~~~-----~~-~v~~~l~  444 (493)
                      |+ |||-|+ +|.|++++..|++.|++       |.+++|+.++.+++++++.......  ...|     .+ .+++...
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~   80 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   80 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence            45 456677 78999999999999986       9999999999999998876543110  0000     00 0001111


Q ss_pred             cccCCceEEEEeccccCCc
Q 011136          445 FTWHLKFFIAANIIHLGNH  463 (493)
Q Consensus       445 ~~~~~~~~i~~n~tplG~~  463 (493)
                      +.| ...++++|.-..+..
T Consensus        81 ~~~-g~iDilvnnAg~~~~   98 (240)
T d2bd0a1          81 ERY-GHIDCLVNNAGVGRF   98 (240)
T ss_dssp             HHT-SCCSEEEECCCCCCC
T ss_pred             HHc-CCcceeecccccccC
Confidence            444 567888888766543

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.32  E-value=0.0072  Score=51.41  Aligned_cols=37  Identities=22%  Similarity=0.421  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      +.++||+|||+|+|..|..-+..|.+.|++|+|+...
T Consensus         9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5688999999999999999999999999999999754

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=95.28  E-value=0.2  Score=45.99  Aligned_cols=160  Identities=19%  Similarity=0.197  Sum_probs=98.4

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCC-CCCch-hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHH---HHHH
Q 011136           32 GESVDKMVVDMGKANASGADLVEIRLDGLK-NFNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVD---VLRL  106 (493)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~---ll~~  106 (493)
                      ..+++++.    .+.+.|||-|||.-++-. .+.|+ ..++.+++...+|+-+-+|+  .+|.|--++++...   -++.
T Consensus         7 v~s~~~a~----~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~iPv~vMIRP--R~GdF~Ys~~E~~~M~~di~~   80 (247)
T d1twda_           7 CYSMECAL----TAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRP--RGGDFCYSDGEFAAILEDVRT   80 (247)
T ss_dssp             ESSHHHHH----HHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCS--SSSCSCCCHHHHHHHHHHHHH
T ss_pred             eCCHHHHH----HHHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHhcCCCeEEEEec--CCCCCCCCHHHHHHHHHHHHH
Confidence            34555554    345679999999877643 34442 34667777789999999995  46667767765544   3556


Q ss_pred             HHHhCCcEEEE-----EcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHhH
Q 011136          107 AMELGADYIDV-----ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITD  181 (493)
Q Consensus       107 ~l~~~~dyIDI-----El~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s~~D  181 (493)
                      +.++|++.|=+     +-..+.+..+++... .++.++..+.- |+.+++   ..+-++.+.++|+|=+==..-+.+..|
T Consensus        81 ~k~~G~dGvV~G~L~~dg~iD~~~~~~L~~~-a~~l~vTFHRA-fD~~~d---~~~al~~Li~lG~~rILTSGg~~~a~~  155 (247)
T d1twda_          81 VRELGFPGLVTGVLDVDGNVDMPRMEKIMAA-AGPLAVTFHRA-FDMCAN---PLYTLNNLAELGIARVLTSGQKSDALQ  155 (247)
T ss_dssp             HHHTTCSEEEECCBCTTSSBCHHHHHHHHHH-HTTSEEEECGG-GGGCSC---HHHHHHHHHHHTCCEEEECTTSSSTTT
T ss_pred             HHHcCCCeEEEEEECCCCCccHHHHHHHHHH-hcccCeeeehh-hhhhCC---HHHHHHHHHhcCCCeEeccCCCCchhH
Confidence            67788988755     223345566677643 24566655332 888875   566667777788764433343455555


Q ss_pred             HHHHHH-HhccCCCCEEEEecC
Q 011136          182 VARVFQ-ITVHSQVPIIGLVMG  202 (493)
Q Consensus       182 ~~~l~~-~~~~~~~PlIa~~MG  202 (493)
                      .+..++ +....+.++|..+-|
T Consensus       156 G~~~L~~L~~~a~~~iIm~GgG  177 (247)
T d1twda_         156 GLSKIMELIAHRDAPIIMAGAG  177 (247)
T ss_dssp             THHHHHHHHTSSSCCEEEEESS
T ss_pred             HHHHHHHHHHhcCCcEEEecCC
Confidence            554444 334344455444433

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0041  Score=62.52  Aligned_cols=76  Identities=20%  Similarity=0.143  Sum_probs=50.6

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhhhcccccceEE
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLLLNTLLFDSVI  438 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~~~~~~~~~~~  438 (493)
                      +++.+|||+|+||.|..++..|+..|+ +|+|++.+                   ..|++.+++.+...+..    -++.
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~----v~i~  110 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN----CNVV  110 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTT----CCCE
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCC----CceE
Confidence            346789999999999999999999999 99997731                   23677777766655421    1122


Q ss_pred             EEe----ecccccCCceEEEEecc
Q 011136          439 VIR----ILLFTWHLKFFIAANII  458 (493)
Q Consensus       439 v~~----~l~~~~~~~~~i~~n~t  458 (493)
                      ...    +..+.+-.+++++++++
T Consensus       111 ~~~~~i~~~~~~~~~~~DlVi~~~  134 (426)
T d1yovb1         111 PHFNKIQDFNDTFYRQFHIIVCGL  134 (426)
T ss_dssp             EECSCGGGBCHHHHTTCSEEEECC
T ss_pred             eeeccccchHHHHHHhcchheecc
Confidence            211    11122336788888664

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0094  Score=54.36  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=30.0

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      .++|+|||||-+|.++|+.|++.|++|+|+.++
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            468999999999999999999999999998653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.12  E-value=0.0095  Score=57.00  Aligned_cols=34  Identities=26%  Similarity=0.423  Sum_probs=31.6

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .|+++|||||-+|.++|+.|++.|.+|.|+.++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            6899999999999999999999999999998764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.12  E-value=0.0077  Score=52.75  Aligned_cols=32  Identities=28%  Similarity=0.364  Sum_probs=29.3

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~  414 (493)
                      +|+|||||-+|.++|+.|++.|. +|+|+.++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            59999999999999999999997 799998853

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.09  E-value=0.0099  Score=53.36  Aligned_cols=41  Identities=17%  Similarity=0.260  Sum_probs=36.6

Q ss_pred             ccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       376 ~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      +..+.||++.|+|.|..|+.++..|...|++|..+++....
T Consensus        38 g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~   78 (197)
T d1j4aa1          38 GREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNP   78 (197)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             CccccCCeEEEecccccchhHHHhHhhhcccccccCccccc
Confidence            35688999999999999999999999999999999987543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.00  E-value=0.014  Score=51.51  Aligned_cols=88  Identities=22%  Similarity=0.191  Sum_probs=57.7

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                      .+.||++.|+|.|..|+.++..+...|++|++++|+.....       .           ....++++-+ .+.++++..
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~-------~-----------~~~~~l~ell-~~sDiv~~~   99 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGP-------W-----------RFTNSLEEAL-REARAAVCA   99 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSS-------S-----------CCBSCSHHHH-TTCSEEEEC
T ss_pred             cccCceEEEeccccccccceeeeeccccccccccccccccc-------e-----------eeeechhhhh-hccchhhcc
Confidence            37899999999999999999999999999999999754210       0           0012344434 556777778


Q ss_pred             cccCCchhhHhhhhhHHHHhhccceEeee
Q 011136          458 IHLGNHLEWVTAAFNLFFYLTCNSYVVME  486 (493)
Q Consensus       458 tplG~~~~~~~~~~~~~~~~~~~~~~~~~  486 (493)
                      +|+.-.-..+.+  -+.|..+.++.++.+
T Consensus       100 ~pl~~~t~~li~--~~~l~~mk~~ailIN  126 (181)
T d1qp8a1         100 LPLNKHTRGLVK--YQHLALMAEDAVFVN  126 (181)
T ss_dssp             CCCSTTTTTCBC--HHHHTTSCTTCEEEE
T ss_pred             cccccccccccc--cceeeeccccceEEe
Confidence            887644333332  233444444555544

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.82  E-value=0.057  Score=43.78  Aligned_cols=48  Identities=19%  Similarity=0.014  Sum_probs=38.1

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC--------hHHHHHHHHHhhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT--------YGESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~--------~~~a~~la~~~~~~~  428 (493)
                      .++++|+|+|-.|--+|.+|+.+|++|+++.|.        ++-++.+.+.+...+
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~g   77 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNN   77 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCC
Confidence            479999999999999999999999999999983        334445555555444

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.81  E-value=0.013  Score=53.19  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=32.4

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .+|+|+|||+|.+|.++|..|++.|++++|+.++.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            57899999999999999999999999999998754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.81  E-value=0.012  Score=49.82  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=31.0

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCC--eEEEEeCCh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTY  414 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~  414 (493)
                      |||++|||+|-+|..++..|.++|.  +|+++.+++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            7999999999999999999999885  899998765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.75  E-value=0.026  Score=48.52  Aligned_cols=46  Identities=28%  Similarity=0.286  Sum_probs=38.4

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .|.+|+|+|+||+|..++..++..|++++++.++.++. ++++.++.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~-~~a~~lGa   75 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR-EAAKALGA   75 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHHTC
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHH-HHHhccCC
Confidence            47899999999999999998899999777888888875 46666653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.74  E-value=0.031  Score=45.81  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=31.5

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      ++|+++|+|+|.+|.-++..|++.|.+|+++.|.
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~   62 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL   62 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEec
Confidence            4689999999999999999999999999999774

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.73  E-value=0.044  Score=46.55  Aligned_cols=46  Identities=24%  Similarity=0.280  Sum_probs=39.2

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .|.+++|.|+|++|.+++..++..|++|+++.++.+|.+ +++.++.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~-~~k~~Ga   72 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLE-LAKELGA   72 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHH-HHHHTTC
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhh-hhhhcCc
Confidence            478999999999999999999999999999999998875 4455553

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.73  E-value=0.01  Score=53.56  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=29.0

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      +|+|||||-+|.++|+.|++.|++|+|+.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence            5899999999999999999999999999874

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.67  E-value=0.026  Score=48.74  Aligned_cols=45  Identities=27%  Similarity=0.406  Sum_probs=39.1

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|.+|+|+|+||.+..++..++..|+ +|++++++.+|.+ ++.+++
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~-~a~~~G   73 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFA-KAKEVG   73 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH-HHHHTT
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHH-HHHHhC
Confidence            47899999999999999999999997 9999999999965 555554

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=94.62  E-value=0.016  Score=51.83  Aligned_cols=40  Identities=30%  Similarity=0.464  Sum_probs=36.5

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      ..+.||++.|||.|..|+.++..|...|++|..++|....
T Consensus        45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   84 (193)
T d1mx3a1          45 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD   84 (193)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCT
T ss_pred             eeeeCceEEEeccccccccceeeeeccccceeeccCcccc
Confidence            5688999999999999999999999999999999997554

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.55  E-value=0.0084  Score=55.21  Aligned_cols=50  Identities=14%  Similarity=0.189  Sum_probs=40.7

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC-------------------hHHHHHHHHHhhhhh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT-------------------YGESLTFLRLMSWLL  428 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~-------------------~~~a~~la~~~~~~~  428 (493)
                      +++++|+|+|+||.|..++..|+..|+ +|++++.+                   ..|++.+++.+...+
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~n   97 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN   97 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhh
Confidence            457899999999999999999999999 99997621                   237777777666554

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=94.49  E-value=0.054  Score=46.53  Aligned_cols=94  Identities=10%  Similarity=0.057  Sum_probs=57.9

Q ss_pred             EEEEEecchHHHH-HHHHHHhCCC-e-EEEEeCChH-HHHHHHHHhhhhhhcccccceEEEEeec-cc-ccCCceEEEEe
Q 011136          383 LFVVIGAGGAGKA-LAYGAKAKGA-R-VVIANRTYG-ESLTFLRLMSWLLLNTLLFDSVIVIRIL-LF-TWHLKFFIAAN  456 (493)
Q Consensus       383 ~vlvlGaGGaara-~~~~L~~~g~-~-i~v~~R~~~-~a~~la~~~~~~~~~~~~~~~~~v~~~l-~~-~~~~~~~i~~n  456 (493)
                      ++.|||+|+.|+. ....|..... + +.|++|+.+ +..+.++.++......    .   ++++ ++ .+ ++.+|+..
T Consensus         6 rvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~----~---~d~l~~~~~~-~~iDiVf~   77 (157)
T d1nvmb1           6 KVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYA----G---VEGLIKLPEF-ADIDFVFD   77 (157)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESS----H---HHHHHHSGGG-GGEEEEEE
T ss_pred             EEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCccccc----c---eeeeeecccc-cccCEEEE
Confidence            7999999999986 4556666654 5 456788865 5556677665432110    0   0111 11 12 57899999


Q ss_pred             ccccCCchhhHhhhhhHHHHhhccceEeeeccc
Q 011136          457 IIHLGNHLEWVTAAFNLFFYLTCNSYVVMEKTE  489 (493)
Q Consensus       457 ~tplG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (493)
                      +||-|.|.+--   |.  +...-+|.+|+|.|-
T Consensus        78 ATpag~h~~~~---~~--~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          78 ATSASAHVQNE---AL--LRQAKPGIRLIDLTP  105 (157)
T ss_dssp             CSCHHHHHHHH---HH--HHHHCTTCEEEECST
T ss_pred             cCCchhHHHhH---HH--HHHHHcCCEEEEccc
Confidence            99999886532   11  122247888998763

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=94.48  E-value=0.032  Score=51.51  Aligned_cols=49  Identities=24%  Similarity=0.369  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEE
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVI  409 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v  409 (493)
                      +.|...+++..+..       .+.+++|++|+|-|.|-+|..++..|.+.|++|+.
T Consensus        11 g~Gv~~~~~~~~~~-------~~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~   59 (242)
T d1v9la1          11 GFGVAVATREMAKK-------LWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA   59 (242)
T ss_dssp             HHHHHHHHHHHHHH-------HHSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             hHHHHHHHHHHHHH-------cCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            56777777655432       12578999999999999999999999999997653

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=94.48  E-value=0.067  Score=46.47  Aligned_cols=89  Identities=13%  Similarity=0.063  Sum_probs=57.2

Q ss_pred             EEEEEecchHHHH-HHHHHHhCC--CeEE-EEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccccc-CCceEEEEec
Q 011136          383 LFVVIGAGGAGKA-LAYGAKAKG--ARVV-IANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTW-HLKFFIAANI  457 (493)
Q Consensus       383 ~vlvlGaGGaara-~~~~L~~~g--~~i~-v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~i~~n~  457 (493)
                      ++.|||+|.+|+. .+.++.+.+  ++|+ |++|+.++++.+++.++...          +..+.++-. .++.++++-+
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~----------~~~~~~ell~~~~id~v~I~   74 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPA----------VFDSYEELLESGLVDAVDLT   74 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCE----------EESCHHHHHHSSCCSEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccc----------eeeeeeccccccccceeecc
Confidence            7899999999986 467777754  3654 89999999999998876432          112222111 1345666667


Q ss_pred             cccCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          458 IHLGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       458 tplG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      ||-..|.+.+.     .+.. .+-.|++||
T Consensus        75 tp~~~h~~~~~-----~al~-~gk~V~~EK   98 (181)
T d1zh8a1          75 LPVELNLPFIE-----KALR-KGVHVICEK   98 (181)
T ss_dssp             CCGGGHHHHHH-----HHHH-TTCEEEEES
T ss_pred             ccccccccccc-----cccc-cchhhhcCC
Confidence            88777766554     2222 344577777

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.39  E-value=0.047  Score=46.97  Aligned_cols=45  Identities=16%  Similarity=0.231  Sum_probs=37.3

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|.+|+|+|+|++|..++..++..|+ .|++++++.+|.+ +++.+.
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~-~~~~~g   77 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLK-LAERLG   77 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHH-HHHHTT
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHH-HHhhcc
Confidence            37899999999999999998888898 8999999988865 444444

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.36  E-value=0.016  Score=50.44  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=29.4

Q ss_pred             EEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          384 FVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      |+|||||-+|.++|+.|++.|.+|.|+.|+.
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            8999999999999999999999999999864

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.32  E-value=0.06  Score=46.71  Aligned_cols=83  Identities=6%  Similarity=-0.079  Sum_probs=52.3

Q ss_pred             CCEEEEEecchHHH--HHHHHHHhC---CC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEE
Q 011136          381 GKLFVVIGAGGAGK--ALAYGAKAK---GA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIA  454 (493)
Q Consensus       381 ~~~vlvlGaGGaar--a~~~~L~~~---g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~  454 (493)
                      .-|+.|||||..+.  ++...|...   .. +|++++.++++++..+..+....-......++..-.+..+.. .+.+++
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal-~~AD~V   81 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAF-TDVDFV   81 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHH-SSCSEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhcc-CCCCEE
Confidence            34799999996543  333334322   23 899999999999877766554432111222444444554544 678899


Q ss_pred             EeccccCCch
Q 011136          455 ANIIHLGNHL  464 (493)
Q Consensus       455 ~n~tplG~~~  464 (493)
                      +++...|-.+
T Consensus        82 vitag~~~~~   91 (167)
T d1u8xx1          82 MAHIRVGKYA   91 (167)
T ss_dssp             EECCCTTHHH
T ss_pred             EECCCcCCCC
Confidence            9988876554

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.24  E-value=0.018  Score=52.47  Aligned_cols=36  Identities=17%  Similarity=0.202  Sum_probs=32.0

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      +||+|||.|+ ||.|++++..|++.|++|.+++|+..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4899999998 78999999999999999999887543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.22  E-value=0.028  Score=45.38  Aligned_cols=48  Identities=23%  Similarity=0.169  Sum_probs=37.9

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH--------HHHHHHHHhhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG--------ESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~--------~a~~la~~~~~~~  428 (493)
                      .++++|||+|-+|.-+|..|..+|.+|+++.|...        -++.+.+.+....
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~G   77 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKG   77 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcC
Confidence            47999999999999999999999999999988543        3444555555443

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.17  E-value=0.028  Score=45.56  Aligned_cols=48  Identities=23%  Similarity=0.110  Sum_probs=37.7

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC--------hHHHHHHHHHhhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT--------YGESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~--------~~~a~~la~~~~~~~  428 (493)
                      .|+++|+|+|-+|.-++..|+++|.+|+|+.|.        ++-++.+.+.+....
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~G   76 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEG   76 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCC
Confidence            478999999999999999999999999999984        333444445555444

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.16  E-value=0.03  Score=45.84  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=31.4

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      +++++|+|+|-+|--+|.+|++.|.+|+++.|..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            5899999999999999999999999999998753

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.16  E-value=0.025  Score=51.69  Aligned_cols=46  Identities=20%  Similarity=0.245  Sum_probs=37.3

Q ss_pred             EEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHhhhhh
Q 011136          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG-ESLTFLRLMSWLL  428 (493)
Q Consensus       383 ~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~-~a~~la~~~~~~~  428 (493)
                      .+||-|+ +|.|++++..|++.|++|++..|+.+ .++++++++....
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~   50 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR   50 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhc
Confidence            3677776 77999999999999999999999854 5677887776554

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.15  E-value=0.031  Score=49.33  Aligned_cols=76  Identities=17%  Similarity=0.029  Sum_probs=53.0

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      ..+.++++.|+|.|..|+.++.-+...|++|+.++|...+..........              .++++-+ ++.++++.
T Consensus        40 ~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~--------------~~l~ell-~~sDiv~~  104 (184)
T d1ygya1          40 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIEL--------------LSLDDLL-ARADFISV  104 (184)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEE--------------CCHHHHH-HHCSEEEE
T ss_pred             ccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhhcCcee--------------ccHHHHH-hhCCEEEE
Confidence            45789999999999999999999999999999999986654433221111              2232222 44577777


Q ss_pred             ccccCCchhhH
Q 011136          457 IIHLGNHLEWV  467 (493)
Q Consensus       457 ~tplG~~~~~~  467 (493)
                      .+|+.-.-..+
T Consensus       105 ~~Plt~~T~~l  115 (184)
T d1ygya1         105 HLPKTPETAGL  115 (184)
T ss_dssp             CCCCSTTTTTC
T ss_pred             cCCCCchhhhh
Confidence            77776554444

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=94.15  E-value=0.029  Score=49.91  Aligned_cols=41  Identities=24%  Similarity=0.257  Sum_probs=36.1

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      ..+.|+++.|+|.|..|+.++.-+...|+++..+++.....
T Consensus        43 ~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   83 (191)
T d1gdha1          43 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS   83 (191)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH
T ss_pred             ceecccceEEeecccchHHHHHHHHhhcccccccccccccc
Confidence            56779999999999999999999999999999999875543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.13  E-value=0.067  Score=46.48  Aligned_cols=82  Identities=16%  Similarity=0.005  Sum_probs=51.2

Q ss_pred             CEEEEEecchHH--HHHHHHHHhC----CCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136          382 KLFVVIGAGGAG--KALAYGAKAK----GARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       382 ~~vlvlGaGGaa--ra~~~~L~~~----g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      -|+.|||+|..+  .+++..|...    +.+|+++++++++++..+..+..........-++..-.+.++.. .+.++++
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL-~dad~Vv   81 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVI-IDADFVI   81 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH-TTCSEEE
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcc-cCCCeEe
Confidence            479999999555  4455555543    23999999999999887766554332111112333333444444 6678888


Q ss_pred             eccccCCch
Q 011136          456 NIIHLGNHL  464 (493)
Q Consensus       456 n~tplG~~~  464 (493)
                      ++...|-.+
T Consensus        82 ~~~~~g~~~   90 (171)
T d1obba1          82 NTAMVGGHT   90 (171)
T ss_dssp             ECCCTTHHH
T ss_pred             eeccccccc
Confidence            877666544

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=94.12  E-value=0.53  Score=41.47  Aligned_cols=152  Identities=13%  Similarity=0.157  Sum_probs=86.4

Q ss_pred             eecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc---hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 011136           29 PIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP---RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR  105 (493)
Q Consensus        29 ~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  105 (493)
                      .|+.++..+..+.++++.+.|+|+|.+|.=.+...+.   ...+..+-+..+.|+|+.-+                  ++
T Consensus        10 ~ITd~~~~~~~~~v~~~l~~Gv~~vqlR~k~~~~~e~~~~a~~l~~i~~~~~~~liind~------------------~~   71 (206)
T d1xi3a_          10 VITDRRLKPEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVDDR------------------VD   71 (206)
T ss_dssp             EECCTTTSCHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEESC------------------HH
T ss_pred             EEeCCcccCHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEechh------------------HH
Confidence            4566666666777888889999999999744332111   12233444556889887533                  23


Q ss_pred             HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCC--H----
Q 011136          106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALD--I----  179 (493)
Q Consensus       106 ~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~~a~s--~----  179 (493)
                      .+.+.++|.|=+.-....  ...... ...+.-+..|.|+      .+    .+.++...|+|.+=+-..-.|  .    
T Consensus        72 lA~~~~adGvHl~~~~~~--~~~~~~-~~~~~iig~s~h~------~~----e~~~a~~~g~DYi~~gpvf~T~tk~~~~  138 (206)
T d1xi3a_          72 VALAVDADGVQLGPEDMP--IEVAKE-IAPNLIIGASVYS------LE----EALEAEKKGADYLGAGSVFPTKTKEDAR  138 (206)
T ss_dssp             HHHHHTCSEEEECTTSCC--HHHHHH-HCTTSEEEEEESS------HH----HHHHHHHHTCSEEEEECSSCC----CCC
T ss_pred             HHHhccCceEeecccccc--Hhhhhh-cccccccccccCC------HH----HHHHHHhcCCCEEEeccccccccccccc
Confidence            566778888876433211  111111 1345556678884      22    345566789998776542222  1    


Q ss_pred             -hHHHHHHHHhccCCCCEEEEecCCcchhhhhh
Q 011136          180 -TDVARVFQITVHSQVPIIGLVMGERGLISRIL  211 (493)
Q Consensus       180 -~D~~~l~~~~~~~~~PlIa~~MG~~G~~SRi~  211 (493)
                       -....+-++.+..+.|+++++==..-.+..++
T Consensus       139 ~~g~~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~  171 (206)
T d1xi3a_         139 VIGLEGLRKIVESVKIPVVAIGGINKDNAREVL  171 (206)
T ss_dssp             CCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHH
T ss_pred             cccHHHHHHHHHhcCCCEEEECCCCHHHHHHHH
Confidence             13344444555568899888533334444443

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.12  E-value=0.051  Score=44.35  Aligned_cols=48  Identities=15%  Similarity=0.124  Sum_probs=39.5

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh--------HHHHHHHHHhhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY--------GESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~--------~~a~~la~~~~~~~  428 (493)
                      .|+++|||+|-.|.-+|..|..+|++|+|+.|..        +-++.+.+.+....
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~G   78 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQG   78 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhcc
Confidence            4799999999999999999999999999998854        55556666665554

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.043  Score=47.25  Aligned_cols=45  Identities=29%  Similarity=0.316  Sum_probs=37.1

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|.+|||.|+ |++|.+++..++..|++++++.+++++. +++++++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~-~~~~~~G   73 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ-KIVLQNG   73 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHTT
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccccccc-ccccccC
Confidence            5789999996 9999999999999999988888887775 4445554

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.09  E-value=0.031  Score=49.39  Aligned_cols=46  Identities=24%  Similarity=0.172  Sum_probs=40.8

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      ....+|+|||+|-+|..++.....+|++|++++++.++.+++.+.+
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~   72 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLG   72 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTT
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhh
Confidence            3456999999999999999999999999999999999888886643

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.07  E-value=0.029  Score=47.47  Aligned_cols=39  Identities=23%  Similarity=0.201  Sum_probs=34.1

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      |+-|||.|-||++++..|.+.|+++++++|+.++...+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~   40 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIER   40 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHh
Confidence            588999999999999999999999999998876665543

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.06  E-value=0.0074  Score=55.91  Aligned_cols=41  Identities=12%  Similarity=0.114  Sum_probs=35.9

Q ss_pred             EEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          383 LFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       383 ~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      ++||-|+ +|.|++++..|++.|++|.+.+|+.++.+++.+.
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~   43 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAF   43 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhh
Confidence            5788887 6799999999999999999999998888877653

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.05  E-value=0.019  Score=52.66  Aligned_cols=43  Identities=19%  Similarity=0.234  Sum_probs=37.6

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCC--eEEEEeCChHHHHHHHHH
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTYGESLTFLRL  423 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~--~i~v~~R~~~~a~~la~~  423 (493)
                      .|+|||-|+ +|.|++++..|++.|+  +|++..|+.++++++.+.
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~   48 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI   48 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh
Confidence            478998887 8899999999999996  788899999999888653

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.00  E-value=0.023  Score=51.45  Aligned_cols=32  Identities=22%  Similarity=0.338  Sum_probs=29.8

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC-eEEEEeCCh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY  414 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~  414 (493)
                      +|+|||+|.+|.+++..|++.|. +|+|+.|..
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            69999999999999999999997 999999864

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.031  Score=49.32  Aligned_cols=38  Identities=24%  Similarity=0.219  Sum_probs=34.3

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESL  418 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~  418 (493)
                      .|||+|+|| |..|++++..|.+.|++|+++.|+.++..
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~   41 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP   41 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc
Confidence            478999996 88999999999999999999999988754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.89  E-value=0.023  Score=51.89  Aligned_cols=32  Identities=28%  Similarity=0.314  Sum_probs=29.8

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .|+|||+|-+|.++|+.|++.|.+|+|+.|..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999853

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=93.86  E-value=0.053  Score=46.26  Aligned_cols=87  Identities=14%  Similarity=0.049  Sum_probs=56.9

Q ss_pred             EEEEEecchHHHH-HHHHHHhC-CCe-EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEeccc
Q 011136          383 LFVVIGAGGAGKA-LAYGAKAK-GAR-VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIH  459 (493)
Q Consensus       383 ~vlvlGaGGaara-~~~~L~~~-g~~-i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tp  459 (493)
                      ++.|||+|.+|+- .+.++... +++ +.|++|+.++++++++.++....+.        +.++.    ++.++++-+||
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~--------~~~l~----~~~D~V~I~tp   70 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADS--------LSSLA----ASCDAVFVHSS   70 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSS--------HHHHH----TTCSEEEECSC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccccccccc--------chhhh----hhccccccccc
Confidence            6899999999964 56677765 454 6689999999999998876443221        01222    34566777788


Q ss_pred             cCCchhhHhhhhhHHHHhhccceEeeec
Q 011136          460 LGNHLEWVTAAFNLFFYLTCNSYVVMEK  487 (493)
Q Consensus       460 lG~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
                      -..|.+....     +.. .+-.|++||
T Consensus        71 ~~~h~~~~~~-----al~-~gk~V~~EK   92 (164)
T d1tlta1          71 TASHFDVVST-----LLN-AGVHVCVDK   92 (164)
T ss_dssp             TTHHHHHHHH-----HHH-TTCEEEEES
T ss_pred             chhccccccc-----ccc-ccceeeccc
Confidence            7777666542     222 233566666

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.85  E-value=0.024  Score=53.96  Aligned_cols=33  Identities=30%  Similarity=0.369  Sum_probs=30.1

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC--eEEEEeCCh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTY  414 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~~  414 (493)
                      |+|+|||||.+|.++|++|++.|.  +|+|+.|+.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            789999999999999999988774  999999974

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.84  E-value=0.015  Score=51.94  Aligned_cols=33  Identities=12%  Similarity=0.053  Sum_probs=29.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCC-------CeEEEEeCCh
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKG-------ARVVIANRTY  414 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g-------~~i~v~~R~~  414 (493)
                      .+|+|||||.+|.++|+.|+++|       ++|+|+.+..
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            58999999999999999999887       3799998864

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.82  E-value=0.019  Score=51.75  Aligned_cols=37  Identities=32%  Similarity=0.451  Sum_probs=32.7

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      +|++||-|+ +|.|++++..|++.|++|++++|+.++.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~   38 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE   38 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc
Confidence            478899887 8899999999999999999999987653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.65  E-value=0.085  Score=42.73  Aligned_cols=48  Identities=21%  Similarity=0.100  Sum_probs=38.3

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC--------hHHHHHHHHHhhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT--------YGESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~--------~~~a~~la~~~~~~~  428 (493)
                      .++++|||+|-.|.-.|..|+++|++|+|+.|.        .+-++.+.+.+....
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~G   77 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQG   77 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcC
Confidence            478999999999999999999999999999874        444555555555443

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.55  E-value=0.041  Score=44.88  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      +++++|+|+|.+|--+|.+|+++|++|+++.|..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            4789999999999999999999999999999854

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.08  Score=43.24  Aligned_cols=48  Identities=19%  Similarity=0.024  Sum_probs=38.2

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC--------hHHHHHHHHHhhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT--------YGESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~--------~~~a~~la~~~~~~~  428 (493)
                      .|+++|+|+|-.|.-++..|+.+|.+|+++.|.        .+-++.+.+.+....
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~G   77 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAG   77 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCC
Confidence            479999999999999999999999999999985        344445555555443

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.47  E-value=0.064  Score=45.99  Aligned_cols=46  Identities=22%  Similarity=0.359  Sum_probs=39.3

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .|.+|+|+|+||.+-.++..++..|. +|++++++++|. +++.+++.
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl-~~a~~~GA   74 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF-EKAKVFGA   74 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTC
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHH-HHHHHcCC
Confidence            47889999999999999999999998 899999999886 45566663

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=93.47  E-value=0.48  Score=42.36  Aligned_cols=144  Identities=21%  Similarity=0.227  Sum_probs=95.1

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 011136           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (493)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~  111 (493)
                      ..|.+++..-++++.+.+..+|=+.-.+.      +..+..++.+++ -+.|+=.-+.|..   +.+.+..-.+.+++.|
T Consensus        14 ~~T~~~i~~lc~~A~~~~~~aVcV~P~~v------~~a~~~l~~s~v-~v~~VigFP~G~~---~~~~k~~e~~~ai~~G   83 (211)
T d1ub3a_          14 TATLEEVAKAAEEALEYGFYGLCIPPSYV------AWVRARYPHAPF-RLVTVVGFPLGYQ---EKEVKALEAALACARG   83 (211)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEECCGGGH------HHHHHHCTTCSS-EEEEEESTTTCCS---CHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhCCeEEEECHHHH------HHHHHHccCCCC-ceEEEEecccccC---cHHHHHHHHHHHHHcC
Confidence            34677888888888777777765543221      122233333343 4455555666664   4567777788999999


Q ss_pred             CcEEEEEcccc----------cchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe----ec
Q 011136          112 ADYIDVELQVA----------REFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT----TA  176 (493)
Q Consensus       112 ~dyIDIEl~~~----------~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~----~a  176 (493)
                      ++-||+=++..          .+.++++.. .+....|||+-.+.+    +.+++....+-+.+.|+|.+|-.+    ..
T Consensus        84 A~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L----~~~ei~~a~~~a~~aGadfiKTSTG~~~~g  159 (211)
T d1ub3a_          84 ADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYF----SPEEIARLAEAAIRGGADFLKTSTGFGPRG  159 (211)
T ss_dssp             CSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGS----CHHHHHHHHHHHHHHTCSEEECCCSSSSCC
T ss_pred             CCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccC----CHHHHHHHHHHHHHhccceEEecCCCCCCC
Confidence            99999966542          112334443 333456999987765    467888888889999999999854    34


Q ss_pred             CCHhHHHHHHHHh
Q 011136          177 LDITDVARVFQIT  189 (493)
Q Consensus       177 ~s~~D~~~l~~~~  189 (493)
                      -+++|+..+.+..
T Consensus       160 at~e~v~~m~~~~  172 (211)
T d1ub3a_         160 ASLEDVALLVRVA  172 (211)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence            5889997777654

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=93.46  E-value=0.045  Score=50.10  Aligned_cols=46  Identities=20%  Similarity=0.304  Sum_probs=36.8

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCC-eEEEEeCCh---HHHHHHHHHhhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTY---GESLTFLRLMSW  426 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~-~i~v~~R~~---~~a~~la~~~~~  426 (493)
                      ++++||.|+ ||.|++++..|++.|+ +|++++|+.   +.++++.+++..
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~   59 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEA   59 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHH
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHh
Confidence            568999995 8899999999999999 799999974   445555555543

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=93.43  E-value=0.092  Score=47.26  Aligned_cols=80  Identities=10%  Similarity=-0.014  Sum_probs=51.1

Q ss_pred             EEEEEecchHHHH-HHHHHHhC-CCeE-EEEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccccc-CCceEEEEecc
Q 011136          383 LFVVIGAGGAGKA-LAYGAKAK-GARV-VIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTW-HLKFFIAANII  458 (493)
Q Consensus       383 ~vlvlGaGGaara-~~~~L~~~-g~~i-~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~i~~n~t  458 (493)
                      ++.|||+|.+|+. .+.++... +++| .|++|+.++++..++.++....      .++...+.++-. .++.++++-+|
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~------~~~~~~d~~ell~~~~iD~V~I~t  108 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPR------KIYDYSNFDKIAKDPKIDAVYIIL  108 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGG------GEECSSSGGGGGGCTTCCEEEECS
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccc------cccccCchhhhcccccceeeeecc
Confidence            7999999999975 55556555 4564 4999999999999998764321      111112222111 13456666677


Q ss_pred             ccCCchhhHh
Q 011136          459 HLGNHLEWVT  468 (493)
Q Consensus       459 plG~~~~~~~  468 (493)
                      |-..|.+...
T Consensus       109 p~~~H~~~~~  118 (221)
T d1h6da1         109 PNSLHAEFAI  118 (221)
T ss_dssp             CGGGHHHHHH
T ss_pred             chhhhhhHHH
Confidence            7777766554

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.056  Score=40.86  Aligned_cols=41  Identities=24%  Similarity=0.233  Sum_probs=35.3

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTF  420 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~l  420 (493)
                      ++.+++|.|+ ||+|..++.-++..|++|+.+.+++++.+-+
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~   72 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence            4778999887 8899999998899999999999998887555

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.32  E-value=0.047  Score=45.28  Aligned_cols=33  Identities=27%  Similarity=0.337  Sum_probs=31.1

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      +++++|||+|-+|--++..|.+.|.+|+++.|.
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~   67 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTA   67 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeec
Confidence            689999999999999999999999999999874

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.28  E-value=0.062  Score=51.43  Aligned_cols=48  Identities=13%  Similarity=0.009  Sum_probs=41.8

Q ss_pred             CCEEEEEecchHHHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHhhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~-~g~-~i~v~~R~~~~a~~la~~~~~~~  428 (493)
                      .+++.|||+|..|+.-+.+|.. ... +|.|++|+.++++++++.+....
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~  174 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG  174 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcC
Confidence            4689999999999999988865 456 99999999999999999887654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.22  E-value=0.04  Score=44.39  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=30.8

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      .++++|+|+|-+|--+|..|+++|++|+++.|.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~   53 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEAR   53 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeee
Confidence            479999999999999999999999999999874

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.21  E-value=0.025  Score=52.23  Aligned_cols=33  Identities=30%  Similarity=0.332  Sum_probs=30.9

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      +|+|+|+|.+|.+++..|++.|.+|.|+.|..+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            699999999999999999999999999999754

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=93.16  E-value=0.92  Score=41.29  Aligned_cols=123  Identities=20%  Similarity=0.139  Sum_probs=76.4

Q ss_pred             HhhhhcCCCEEEEEecCCCCCCc--hhHHHHHHh---hCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 011136           43 GKANASGADLVEIRLDGLKNFNP--RENIKTLIK---ESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV  117 (493)
Q Consensus        43 ~~~~~~~aD~vElRlD~l~~~~~--~~~l~~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDI  117 (493)
                      ++++..|+|+|=+.+.+-.+.+.  .+.++.+.+   ...+|+++-.-+...+-....+.+.-....+.+.++|+|.+-+
T Consensus        97 e~a~rlGadaV~~~v~~g~~~e~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK~  176 (251)
T d1ojxa_          97 EEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKI  176 (251)
T ss_dssp             HHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHhchhceEEEEEeCCCCchHHHHHHHHHHHHHHHHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEEEe
Confidence            34456799999999965443221  123334443   3489998886543222222333443334477788999999999


Q ss_pred             EcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC
Q 011136          118 ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD  168 (493)
Q Consensus       118 El~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaD  168 (493)
                      ++..+.+...++... .....|+++-=  ....+.++..+..+.+.+.||-
T Consensus       177 ~~p~~~~~~~~~v~~-a~~~pv~~~gG--~~~~~~~~~l~~~~~a~~~Ga~  224 (251)
T d1ojxa_         177 KYTGDPKTFSWAVKV-AGKVPVLMSGG--PKTKTEEDFLKQVEGVLEAGAL  224 (251)
T ss_dssp             CCCSSHHHHHHHHHH-TTTSCEEEECC--SCCSSHHHHHHHHHHHHHTTCC
T ss_pred             cCCCcHHHHHHHHHh-cCCCceEEeCC--CCCCCHHHHHHHHHHHHHCCCc
Confidence            998876666555432 24556666521  2233567888998888888875

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.14  E-value=0.26  Score=39.92  Aligned_cols=48  Identities=17%  Similarity=-0.051  Sum_probs=37.2

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC-------hHHHHHHHHHhhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT-------YGESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~-------~~~a~~la~~~~~~~  428 (493)
                      .++++|||+|-.|.-.|..|.++|++|+|+-|+       .+-++.+.+.+....
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~G   74 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHG   74 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCC
Confidence            468999999999999999999999999998875       223444555555443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=93.08  E-value=0.068  Score=47.05  Aligned_cols=38  Identities=16%  Similarity=0.107  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      ..+.++++.|+|.|..|++++..|...|.+|..++|..
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             eeccccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            56789999999999999999999999999999999864

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.98  E-value=0.035  Score=49.63  Aligned_cols=32  Identities=28%  Similarity=0.261  Sum_probs=28.6

Q ss_pred             EEEEEecchHHHHHHHHHHhC--CCeEEEEeCCh
Q 011136          383 LFVVIGAGGAGKALAYGAKAK--GARVVIANRTY  414 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~--g~~i~v~~R~~  414 (493)
                      +|+|||||.+|.++|..|.+.  |++|+|+.+..
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            799999999999999999765  56999999875

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=92.95  E-value=0.035  Score=51.58  Aligned_cols=31  Identities=29%  Similarity=0.442  Sum_probs=29.0

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC-eEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~  413 (493)
                      +|+|||+|-+|.++|+.|++.|. +|+|+.|+
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            59999999999999999999997 79999886

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=92.94  E-value=0.083  Score=51.04  Aligned_cols=46  Identities=13%  Similarity=0.163  Sum_probs=40.3

Q ss_pred             CCEEEEEecchHHHHHHHHHH-hCCC-eEEEEeCChHHHHHHHHHhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAK-AKGA-RVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~-~~g~-~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++.|||+|..|+.-+.++. ..+. +|.|++|++++++++++.+..
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~  175 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE  175 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhh
Confidence            478999999999999888774 4677 999999999999999998764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=92.91  E-value=0.036  Score=50.50  Aligned_cols=37  Identities=24%  Similarity=0.205  Sum_probs=32.6

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLT  419 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~  419 (493)
                      .|+|||+|.+|..+|+.|++.|.+|.|+.|+..-..+
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k   42 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRK   42 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHH
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            5999999999999999999999999999998654433

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.87  E-value=0.034  Score=50.42  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=31.3

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      +++|||.|+ ||.|++++..|++.|++|++++|+.+
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            357999988 78999999999999999999999864

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.85  E-value=0.056  Score=46.60  Aligned_cols=45  Identities=27%  Similarity=0.240  Sum_probs=36.9

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +|++|||.|+ |+.|.+++..++..|++|+.+.++.++.+.+ +.++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~-~~lG   72 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP-LALG   72 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH-HHTT
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccc-cccc
Confidence            5789999996 9999999999999999988888888776544 4444

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.71  E-value=0.04  Score=49.50  Aligned_cols=32  Identities=34%  Similarity=0.577  Sum_probs=29.7

Q ss_pred             EEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      |+|||+|.+|.++|..|++.|.+|.|+.|+..
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            89999999999999999999999999988643

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.69  E-value=0.034  Score=50.87  Aligned_cols=42  Identities=14%  Similarity=0.191  Sum_probs=36.3

Q ss_pred             CEEEEEec-chHHHHHHHHHHh---CCCeEEEEeCChHHHHHHHHH
Q 011136          382 KLFVVIGA-GGAGKALAYGAKA---KGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~---~g~~i~v~~R~~~~a~~la~~  423 (493)
                      |+|||-|+ +|.|++++..|.+   .|++|++..|+.++++++.+.
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~   48 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDL   48 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH
Confidence            78999998 8899999999864   577999999999999887653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.69  E-value=0.029  Score=48.83  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=30.1

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      ++++|+|||+|.+|..+|..+++.|.+++|+.|.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEee
Confidence            3578999999999999999999999988888653

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.57  E-value=0.063  Score=49.13  Aligned_cols=44  Identities=27%  Similarity=0.392  Sum_probs=36.5

Q ss_pred             EEEEec-chHHHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHhhhh
Q 011136          384 FVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYGESLTFLRLMSWL  427 (493)
Q Consensus       384 vlvlGa-GGaara~~~~L~~~g~~i~v~-~R~~~~a~~la~~~~~~  427 (493)
                      |||-|+ +|.|++++..|++.|++|++. .|+.++++++++.+...
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~   49 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY   49 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc
Confidence            555565 889999999999999998885 78888999998877644

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.051  Score=50.25  Aligned_cols=29  Identities=34%  Similarity=0.421  Sum_probs=27.6

Q ss_pred             EEEEecchHHHHHHHHHHhCCCeEEEEeC
Q 011136          384 FVVIGAGGAGKALAYGAKAKGARVVIANR  412 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g~~i~v~~R  412 (493)
                      |+|||||-+|.++|+.|++.|.+|+|+.+
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~   30 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEA   30 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence            79999999999999999999999999975

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.43  E-value=0.28  Score=41.05  Aligned_cols=44  Identities=20%  Similarity=0.270  Sum_probs=35.9

Q ss_pred             EEEEEe-cchHHHHHHHHHHhCCC--eEEEEeCC--hHHHHHHHHHhhh
Q 011136          383 LFVVIG-AGGAGKALAYGAKAKGA--RVVIANRT--YGESLTFLRLMSW  426 (493)
Q Consensus       383 ~vlvlG-aGGaara~~~~L~~~g~--~i~v~~R~--~~~a~~la~~~~~  426 (493)
                      |+.|+| +|..|.++++.|...|.  ++.++++.  .++++..+.++..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~   50 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH   50 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHH
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhh
Confidence            789999 69999999999999985  89999854  5566666666654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.33  E-value=0.08  Score=42.58  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=32.0

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .+++++|+|+|-+|.-+|..|+..|.+++++.|..
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            47899999999999999999999999999998853

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.31  E-value=0.096  Score=44.63  Aligned_cols=45  Identities=22%  Similarity=0.232  Sum_probs=37.0

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~  425 (493)
                      .+.+++|+|+ |++|..++..++..|+ +|+++.++.+|.+.+ ++++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~-~~~G   73 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA-KRAG   73 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH-HHHT
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHH-HHcC
Confidence            4679999995 9999999998888897 999999998876444 5554

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.18  E-value=0.051  Score=51.37  Aligned_cols=36  Identities=22%  Similarity=0.246  Sum_probs=32.2

Q ss_pred             CCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      +.-.|+|||||-+|.++++.|.+.|.+++|+.++.+
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            455799999999999999999999999999998753

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.18  E-value=0.057  Score=48.10  Aligned_cols=40  Identities=23%  Similarity=0.211  Sum_probs=36.1

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      ..+.||++.|+|.|..|+.++..|...|++|+.++|...+
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   80 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK   80 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             ccccceeeeeeecccccccccccccccceeeeccCCccch
Confidence            5678999999999999999999999999999999987543

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=92.17  E-value=0.1  Score=47.93  Aligned_cols=45  Identities=24%  Similarity=0.308  Sum_probs=35.6

Q ss_pred             EEEEec-chHHHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHhhhhh
Q 011136          384 FVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYGESLTFLRLMSWLL  428 (493)
Q Consensus       384 vlvlGa-GGaara~~~~L~~~g~~i~v~-~R~~~~a~~la~~~~~~~  428 (493)
                      +||-|+ +|.|++++..|++.|++|++. .|+.++++++++.++...
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~   51 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR   51 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhc
Confidence            344455 789999999999999998875 567888888888776543

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.16  E-value=0.084  Score=44.58  Aligned_cols=38  Identities=24%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             EEEEEec-chHHHHHHHHHHhCCC--eEEEEeCChHHHHHH
Q 011136          383 LFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTYGESLTF  420 (493)
Q Consensus       383 ~vlvlGa-GGaara~~~~L~~~g~--~i~v~~R~~~~a~~l  420 (493)
                      |+.|+|| |.+|.++++.|+..|.  ++.+++.+..+++.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~   42 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA   42 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH
Confidence            7999996 9999999999999985  899999987665543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.10  E-value=0.046  Score=43.53  Aligned_cols=37  Identities=11%  Similarity=0.202  Sum_probs=30.8

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      .+++||+|+|+|+|-+|.-++..|+..+.++++..|.
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            5688999999999999999999998887765555553

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.10  E-value=0.24  Score=40.38  Aligned_cols=48  Identities=13%  Similarity=0.169  Sum_probs=39.5

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC--------hHHHHHHHHHhhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT--------YGESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~--------~~~a~~la~~~~~~~  428 (493)
                      .++++|+|+|-.|.-+|..+..+|.+++|+.|.        .+-++.+.+.+....
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~g   81 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRF   81 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGE
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcC
Confidence            579999999999999999999999999999874        455666666666544

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=92.10  E-value=0.037  Score=52.44  Aligned_cols=45  Identities=24%  Similarity=0.191  Sum_probs=37.9

Q ss_pred             cCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 011136          379 LAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRTYGESLTFLRL  423 (493)
Q Consensus       379 l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R~~~~a~~la~~  423 (493)
                      ++||+|||.|+.| .|+.++..|.+.|++|++++|+..+...+.+.
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~   51 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFET   51 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHH
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhh
Confidence            4689999999755 99999999999999999999987766555443

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.09  E-value=0.045  Score=47.93  Aligned_cols=47  Identities=26%  Similarity=0.245  Sum_probs=39.3

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhhhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~-~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      +++|||.|| ||+|.+++.-++..|+ .|+.+.++.++.+.++..++..
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad   79 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD   79 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce
Confidence            478999995 9999999998888999 6777888888888888777643

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: KguE-like
domain: Hypothetical protein PA2260
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.03  E-value=0.42  Score=43.04  Aligned_cols=101  Identities=20%  Similarity=0.191  Sum_probs=60.1

Q ss_pred             HHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEecc--CCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 011136           42 MGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRP--IWEGGQYDGDENERVDVLRLAMELGADYIDVEL  119 (493)
Q Consensus        42 ~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~--~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl  119 (493)
                      ++.+.+.|+|.||+|-+++.+..+.+.++.+.+...+++....-.  ..+.+.   ..+...+.++.+.++|+.+|-+-.
T Consensus        25 l~~~a~~G~dgIEi~~~~~~~~~~~~~l~~~~~~~GL~i~~~~~~~~~~~~~~---~~~~~~~~i~~A~~LG~~~v~~~~  101 (250)
T d1yx1a1          25 LPLLAMAGAQRVELREELFAGPPDTEALTAAIQLQGLECVFSSPLELWREDGQ---LNPELEPTLRRAEACGAGWLKVSL  101 (250)
T ss_dssp             HHHHHHHTCSEEEEEGGGCSSCCCHHHHHHHHHHTTCEEEEEEEEEEECTTSS---BCTTHHHHHHHHHHTTCSEEEEEE
T ss_pred             HHHHHHhCCCEEEEecccCCCcchHHHHHHHHHHcCCEEEEecccccccCchh---hHHHHHHHHHHHHHhCCCEEEEee
Confidence            344556799999999988765444566777777788877543211  112222   123445678888889998887754


Q ss_pred             cccc--chhHHHhh-cCCCCcEEEEEccc
Q 011136          120 QVAR--EFNDSIRG-KKPEKCKVIVSSHN  145 (493)
Q Consensus       120 ~~~~--~~~~~l~~-~~~~~~kiI~S~H~  145 (493)
                      ....  +.++.+.. +++.++++.+..|.
T Consensus       102 g~~~~~~~l~~l~~~a~~~Gv~l~iE~h~  130 (250)
T d1yx1a1         102 GLLPEQPDLAALGRRLARHGLQLLVENDQ  130 (250)
T ss_dssp             ECCCSSCCHHHHHHHHTTSSCEEEEECCS
T ss_pred             cccchhHHHHHHHHHHHHcCCEEEEEeCC
Confidence            3321  22333332 33456666655553

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=92.00  E-value=0.059  Score=49.28  Aligned_cols=31  Identities=26%  Similarity=0.514  Sum_probs=28.8

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      .|+|||+|-+|.++|+.|++.|.+|+|+.|.
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3899999999999999999999999999874

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.99  E-value=0.15  Score=44.39  Aligned_cols=76  Identities=17%  Similarity=0.056  Sum_probs=47.5

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      +|.+|||-|+ ||+|.+++.-++..|++|+.+.++.+|.+.+ +.++.........+...++.   ...+.++++++|..
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~-~~lGa~~vi~~~~~~~~~~~---~~~~~gvD~vid~v  106 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL-RVLGAKEVLAREDVMAERIR---PLDKQRWAAAVDPV  106 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH-HHTTCSEEEECC------------CCSCCEEEEEECS
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHH-HhcccceeeecchhHHHHHH---HhhccCcCEEEEcC
Confidence            4788999995 8899999998889999999999998886554 44443221110001111111   11245678888866


Q ss_pred             c
Q 011136          459 H  459 (493)
Q Consensus       459 p  459 (493)
                      .
T Consensus       107 g  107 (176)
T d1xa0a2         107 G  107 (176)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=91.93  E-value=0.15  Score=47.17  Aligned_cols=51  Identities=22%  Similarity=0.298  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEE-EEe
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IAN  411 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~-v~~  411 (493)
                      +.|.+.+++..+..       .+.+++|++|+|-|.|-+|+.++..|.+.|++|+ |.+
T Consensus        16 G~Gv~~~~~~~~~~-------~~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          16 GYGSVYYVEAVMKH-------ENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             HHHHHHHHHHHHHH-------TTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             hHHHHHHHHHHHHh-------CCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence            67777777765543       1257899999999999999999999999999654 443

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.87  E-value=0.052  Score=51.04  Aligned_cols=32  Identities=19%  Similarity=0.363  Sum_probs=29.4

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .++|||||-+|.++|+.|++.|.+|.|+.++.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            58999999999999999999999999998753

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.86  E-value=0.13  Score=46.68  Aligned_cols=37  Identities=27%  Similarity=0.285  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~  413 (493)
                      .++++.+++++|||.+|-+++..|.+.|. ++++++|.
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            57889999999999999999999999998 99999984

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.76  E-value=1.6  Score=39.86  Aligned_cols=143  Identities=20%  Similarity=0.116  Sum_probs=94.6

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 011136           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG  111 (493)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~  111 (493)
                      ..|.+++..-++++.+.+..+|=++--+.      +..+..++.+++.+ .|+=.-+.|-.   +.+.+..-.+.+++.|
T Consensus        47 ~~t~e~i~~lc~~A~~~~~aaVcV~P~~v------~~a~~~L~gs~v~v-~tVigFP~G~~---~~~~K~~Ea~~Ai~~G  116 (251)
T d1o0ya_          47 FATPDDIKKLCLEARENRFHGVCVNPCYV------KLAREELEGTDVKV-VTVVGFPLGAN---ETRTKAHEAIFAVESG  116 (251)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHTTSCCEE-EEEESTTTCCS---CHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHhhcCceEEEECHHHH------HHHHHHhcCCCceE-EeeccCCCCCC---cHHHHHHHHHHHHHcC
Confidence            34578888888888887777766644322      23334444456554 45544555443   5567777788999999


Q ss_pred             CcEEEEEcccc----------cchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe----ec
Q 011136          112 ADYIDVELQVA----------REFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT----TA  176 (493)
Q Consensus       112 ~dyIDIEl~~~----------~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~----~a  176 (493)
                      ++-||+=++..          .+.++.+.. .+..-.|||+-....    +.+++....+-+.+.|+|.+|-.+    ..
T Consensus       117 AdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L----~~~e~~~a~~ia~~aGadfvKTSTGf~~~g  192 (251)
T d1o0ya_         117 ADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYL----DTEEKIAACVISKLAGAHFVKTSTGFGTGG  192 (251)
T ss_dssp             CSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGC----CHHHHHHHHHHHHHTTCSEEECCCSSSSCC
T ss_pred             CceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeeccccc----CcHHHHHHHHHHHHhCcceeeccCCCCCCC
Confidence            99999966542          122334443 345677899866543    567888888888899999999754    35


Q ss_pred             CCHhHHHHHHHH
Q 011136          177 LDITDVARVFQI  188 (493)
Q Consensus       177 ~s~~D~~~l~~~  188 (493)
                      -+++|+..+.+.
T Consensus       193 at~e~V~~m~~~  204 (251)
T d1o0ya_         193 ATAEDVHLMKWI  204 (251)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            688888665544

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.60  E-value=0.062  Score=43.85  Aligned_cols=48  Identities=25%  Similarity=0.174  Sum_probs=38.5

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC--------hHHHHHHHHHhhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT--------YGESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~--------~~~a~~la~~~~~~~  428 (493)
                      .++++|||+|-.|.-+|..|..+|++|+|+.|.        .+-++.+.+.+....
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~G   80 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQG   80 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhccc
Confidence            479999999999999999999999999999884        444455555555444

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.55  E-value=0.072  Score=48.25  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=28.8

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      |-|||-|+ +|.|++++..|++.|++|++++|+.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            45777786 8899999999999999999999864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.44  E-value=0.097  Score=46.13  Aligned_cols=37  Identities=24%  Similarity=0.398  Sum_probs=32.1

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      .+++||+|+|||+|-+|--+++.+++.+.+++++-|+
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            4578999999999999999999999998877666654

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=91.35  E-value=0.14  Score=44.26  Aligned_cols=42  Identities=29%  Similarity=0.306  Sum_probs=35.0

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFL  421 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la  421 (493)
                      +|.+|||.|+ ||.|.+++...+..|++|+.+.|+.++.+.+.
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~   71 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK   71 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHH
Confidence            4789999999 55999998888889999999999988865543

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.28  E-value=0.055  Score=47.18  Aligned_cols=32  Identities=16%  Similarity=0.230  Sum_probs=28.7

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeC
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R  412 (493)
                      .++|+|||+|.+|..+|..|++.|.++.|+.+
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~   36 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEG   36 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEe
Confidence            47899999999999999999999998888764

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.18  E-value=0.11  Score=44.63  Aligned_cols=45  Identities=22%  Similarity=0.180  Sum_probs=36.2

Q ss_pred             CCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          380 AGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       380 ~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .|++|+|.|+|| .|.+++..++..|++|+++.|+.+|.+.+ +.++
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~-~~lG   73 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA-LKAG   73 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HHHT
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHH-HhcC
Confidence            478999996655 99998888888899999999999887554 4444

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.15  E-value=1  Score=40.58  Aligned_cols=79  Identities=16%  Similarity=0.135  Sum_probs=45.8

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC----CchhHHHHHHhhCCCcEEEEeccCCCCCCCCC-CH---HHHHHH
Q 011136           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNF----NPRENIKTLIKESPVPTLFTYRPIWEGGQYDG-DE---NERVDV  103 (493)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~----~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~-~~---~~~~~l  103 (493)
                      .=++++.++.+.   +.|.|.|||+.|.....    ...+.++.+.+...++++--.-    .+.+.. .+   +...++
T Consensus        17 ~l~lee~l~~a~---~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~l~~~gl~i~~l~~----~~~~~~~~~~~~~~~~~~   89 (271)
T d2q02a1          17 GLSIEAFFRLVK---RLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINA----VYPFNQLTEEVVKKTEGL   89 (271)
T ss_dssp             TSCHHHHHHHHH---HTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEE----ETTTTSCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHH---HhCCCEEEEecCcccccccccCCHHHHHHHHHHcCCcEEEeec----ccccCCCCHHHHHHHHHH
Confidence            345777766554   56999999998865422    2245677777777776542111    112222 22   222345


Q ss_pred             HHHHHHhCCcEEEE
Q 011136          104 LRLAMELGADYIDV  117 (493)
Q Consensus       104 l~~~l~~~~dyIDI  117 (493)
                      ++.+.++|+..|=+
T Consensus        90 i~~a~~lG~~~v~~  103 (271)
T d2q02a1          90 LRDAQGVGARALVL  103 (271)
T ss_dssp             HHHHHHHTCSEEEE
T ss_pred             HHHHHHcCCcEEEE
Confidence            66677778777654

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=91.01  E-value=0.16  Score=47.93  Aligned_cols=45  Identities=20%  Similarity=0.252  Sum_probs=39.3

Q ss_pred             CCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          380 AGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       380 ~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      +||+|||.|+.| .|+.++..|.+.|++|..+.|+.++...+....
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~   55 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRW   55 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhh
Confidence            589999999966 999999999999999999999998887776543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.86  E-value=0.088  Score=48.88  Aligned_cols=31  Identities=39%  Similarity=0.652  Sum_probs=29.0

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      -|+|||+|.+|.+++..|++.|.+|.|+.+.
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4999999999999999999999999999874

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.82  E-value=0.098  Score=45.95  Aligned_cols=31  Identities=23%  Similarity=0.381  Sum_probs=28.9

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      .++|||+|.+|.+++..++++|.+|.|+.+.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            3899999999999999999999999999885

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.69  E-value=0.085  Score=46.30  Aligned_cols=31  Identities=26%  Similarity=0.339  Sum_probs=28.6

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      -++|||+|.+|.+++..++++|.++.|+.+.
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~   35 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKR   35 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEec
Confidence            3899999999999999999999999999765

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=90.63  E-value=0.11  Score=46.30  Aligned_cols=32  Identities=34%  Similarity=0.531  Sum_probs=29.5

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      -++|||+|.+|.+++..+++.|.++.|+.+..
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            48999999999999999999999999998754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.44  E-value=0.09  Score=44.64  Aligned_cols=30  Identities=33%  Similarity=0.506  Sum_probs=25.8

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEE
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIA  410 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~  410 (493)
                      +++|+|||+|.+|-.++.+|.++|.+++|+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence            578999999999999999999999744433

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.43  E-value=0.12  Score=45.59  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=28.6

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      .|+|||+|.+|.++|..+++.|.+|.|+.+.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~   37 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKR   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEec
Confidence            4899999999999999999999999999864

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.39  E-value=0.2  Score=47.60  Aligned_cols=42  Identities=12%  Similarity=0.215  Sum_probs=35.7

Q ss_pred             CCEEEEEecc---hHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          381 GKLFVVIGAG---GAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       381 ~~~vlvlGaG---Gaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      +|-+||-|+|   |.|++++.+|++.|++|.+..|+.........
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~   46 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKN   46 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHH
Confidence            5789999976   89999999999999999999998766555544

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.26  E-value=0.27  Score=42.60  Aligned_cols=45  Identities=16%  Similarity=0.113  Sum_probs=33.3

Q ss_pred             CCCEEEEE--ecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 011136          380 AGKLFVVI--GAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLM  424 (493)
Q Consensus       380 ~~~~vlvl--GaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~  424 (493)
                      .|.+++|+  |+||.|.+++.-.+..|++++.+-|+.++.++..+.+
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~   74 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASL   74 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHH
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhh
Confidence            36789998  5688999999888889997776666665555544433

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.21  E-value=0.26  Score=41.17  Aligned_cols=43  Identities=14%  Similarity=0.149  Sum_probs=38.3

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      .++|+|.|..|+.++..|.+.|.+++|+..++++.....+...
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~   47 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL   47 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh
Confidence            5999999999999999999999999999999988777766544

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.14  E-value=0.58  Score=41.47  Aligned_cols=118  Identities=19%  Similarity=0.248  Sum_probs=71.3

Q ss_pred             CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEE---EeccCCCCCCCCCCHHH
Q 011136           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLF---TYRPIWEGGQYDGDENE   99 (493)
Q Consensus        23 ~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~---T~R~~~eGG~~~~~~~~   99 (493)
                      ++.|. -|+..+.++...-++.+.+.|.+++|+.+.-   .+..+.++.+++...--+++   |+.+          .  
T Consensus         9 ~~iip-vlr~~~~~~a~~~~~al~~~Gi~~iEitlr~---p~a~~~i~~l~~~~~~~~~vGaGTV~~----------~--   72 (202)
T d1wa3a1           9 HKIVA-VLRANSVEEAKEKALAVFEGGVHLIEITFTV---PDADTVIKELSFLKEKGAIIGAGTVTS----------V--   72 (202)
T ss_dssp             HCEEE-EECCSSHHHHHHHHHHHHHTTCCEEEEETTS---TTHHHHHHHTHHHHHTTCEEEEESCCS----------H--
T ss_pred             CCEEE-EEECCCHHHHHHHHHHHHHcCCCEEEEecCC---ccHHHHHHHHHHhcCCCcEEEeccccc----------H--
Confidence            44554 4889999999999999999999999998752   12234555554322112333   3432          2  


Q ss_pred             HHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 011136          100 RVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF  172 (493)
Q Consensus       100 ~~~ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKi  172 (493)
                        +-++.+++.|++|+ |==..++++.+...   +.+..+|-..-    ||+  |    ..++.+.|+|++|+
T Consensus        73 --~~~~~a~~aGa~fi-vsP~~~~~v~~~~~---~~~i~~iPGv~----Tps--E----i~~A~~~G~~~lK~  129 (202)
T d1wa3a1          73 --EQCRKAVESGAEFI-VSPHLDEEISQFCK---EKGVFYMPGVM----TPT--E----LVKAMKLGHTILKL  129 (202)
T ss_dssp             --HHHHHHHHHTCSEE-ECSSCCHHHHHHHH---HHTCEEECEEC----SHH--H----HHHHHHTTCCEEEE
T ss_pred             --HHHHHHHhhcccEE-eCCCCcHHHHHHHH---hcCCceeCCcC----cHH--H----HHHHHHCCCCEEEe
Confidence              23567888999998 32223333433332   34555554432    443  3    34456799999996

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.06  E-value=0.13  Score=44.14  Aligned_cols=69  Identities=22%  Similarity=0.134  Sum_probs=48.4

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeeccc---------ccCC
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLF---------TWHL  449 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~---------~~~~  449 (493)
                      +|.+|||.|+ |+.|.+++.-++..|++++++.++.++.+. ++.++...          ++...++         ..+.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~-l~~~Ga~~----------vi~~~~~~~~~~v~~~t~~~   93 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREM-LSRLGVEY----------VGDSRSVDFADEILELTDGY   93 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHH-HHTTCCSE----------EEETTCSTHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccc-cccccccc----------cccCCccCHHHHHHHHhCCC
Confidence            4789999996 999999999888899988888888887654 44444222          1111111         1345


Q ss_pred             ceEEEEeccc
Q 011136          450 KFFIAANIIH  459 (493)
Q Consensus       450 ~~~i~~n~tp  459 (493)
                      ++++++++++
T Consensus        94 g~d~v~d~~g  103 (183)
T d1pqwa_          94 GVDVVLNSLA  103 (183)
T ss_dssp             CEEEEEECCC
T ss_pred             CEEEEEeccc
Confidence            7899998886

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=89.99  E-value=0.13  Score=48.79  Aligned_cols=38  Identities=29%  Similarity=0.321  Sum_probs=33.4

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESL  418 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~  418 (493)
                      .|+|+|+|+ |..|++++..|.+.|++|+++.|+..+..
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~   41 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI   41 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhh
Confidence            578999997 77999999999999999999999876543

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.91  E-value=0.75  Score=43.09  Aligned_cols=57  Identities=23%  Similarity=0.245  Sum_probs=39.2

Q ss_pred             HHHHHHHHHhhhcccCCC-CCCcccccCCCEEEEEecchHHHHHHHHHHhCCCeEEEE
Q 011136          354 YVGAISAIEDGLRGRLNV-SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA  410 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~-~~~~~~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~  410 (493)
                      +.|.+.+++..+...... -.....+++|++|+|-|.|-+|..++..|.+.|++|+-+
T Consensus         8 G~GV~~~~~~~l~~~~~~~~~gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~v   65 (293)
T d1hwxa1           8 GRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAV   65 (293)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcccchhccCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            677777776654310000 000013688999999999999999999999999975543

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=89.87  E-value=0.11  Score=48.64  Aligned_cols=30  Identities=30%  Similarity=0.401  Sum_probs=28.0

Q ss_pred             EEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          384 FVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      |+|||+|.+|.++|..+++.|.+|.|+.+.
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~   37 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLI   37 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            999999999999999999999999998763

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=89.85  E-value=0.11  Score=48.61  Aligned_cols=31  Identities=42%  Similarity=0.699  Sum_probs=29.0

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      -|+|||+|.+|.+++..|++.|.+|.|+.+.
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~   55 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKE   55 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4999999999999999999999999999874

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.84  E-value=0.13  Score=43.62  Aligned_cols=31  Identities=29%  Similarity=0.404  Sum_probs=28.2

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      .|+|||+|.+|..++..+++.|.++.|+.|.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            4899999999999999999999998888863

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.71  E-value=0.14  Score=44.64  Aligned_cols=31  Identities=32%  Similarity=0.439  Sum_probs=28.7

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      .++|||+|.+|.+++.++++.|.++.|+.|.
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            4899999999999999999999999999875

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.68  E-value=0.18  Score=43.73  Aligned_cols=40  Identities=18%  Similarity=0.064  Sum_probs=33.4

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCC--eEEEEeCChHHHHHHH
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTYGESLTFL  421 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~--~i~v~~R~~~~a~~la  421 (493)
                      ++|||.|+ |..|++++..|.+.|.  .|+...|+.++...+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~   46 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG   46 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhcc
Confidence            68999995 8899999999999996  5666789988776554

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.68  E-value=0.12  Score=45.21  Aligned_cols=30  Identities=27%  Similarity=0.439  Sum_probs=28.1

Q ss_pred             EEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          384 FVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      ++|||+|.+|..++..+++.|.++.|+.+.
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            899999999999999999999999999864

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.47  E-value=0.29  Score=42.43  Aligned_cols=44  Identities=23%  Similarity=0.247  Sum_probs=36.1

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhh
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMS  425 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~  425 (493)
                      +.++||.|+ ||.|.+++.-++..|++++.+.|+.+|.+.+ +.++
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~-~~lG   76 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL-KSLG   76 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH-HHHT
T ss_pred             CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH-Hhhc
Confidence            457888876 9999999999999999999999999997655 4444

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.34  E-value=0.24  Score=41.96  Aligned_cols=35  Identities=31%  Similarity=0.330  Sum_probs=30.4

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeCC
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R~  413 (493)
                      ..+++|+|||+|-+|--++..+.++|+ .|+++-|.
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            346789999999999999999999999 78888774

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.17  E-value=0.12  Score=45.83  Aligned_cols=31  Identities=26%  Similarity=0.373  Sum_probs=28.5

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      -++|||+|.+|.+++..+++.|.++.|+.+.
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4899999999999999999999999999843

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.16  E-value=0.24  Score=43.32  Aligned_cols=39  Identities=26%  Similarity=0.246  Sum_probs=35.3

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      ..+.++++.|+|.|..|+.++..|...|++|+.++|+..
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          40 FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccccceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            457899999999999999999999999999999998754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.12  E-value=0.26  Score=40.27  Aligned_cols=37  Identities=14%  Similarity=0.227  Sum_probs=31.1

Q ss_pred             CCEEEEEecch-----------HHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          381 GKLFVVIGAGG-----------AGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       381 ~~~vlvlGaGG-----------aara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      .|+|||||+|+           ++-.++.+|++.|++++++|-+++..
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV   51 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV   51 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh
Confidence            57999999985           46678899999999999999887653

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.95  E-value=0.15  Score=49.68  Aligned_cols=31  Identities=35%  Similarity=0.486  Sum_probs=28.5

Q ss_pred             EEEEEecchHHHHHHHHHHh------CCCeEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKA------KGARVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~------~g~~i~v~~R~  413 (493)
                      -|+|||+|.||.++|+.|++      .|.+|.|+.|.
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~   70 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKA   70 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCC
Confidence            49999999999999999997      78899999985

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.95  E-value=0.24  Score=43.57  Aligned_cols=40  Identities=18%  Similarity=0.134  Sum_probs=36.7

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++.|+|+|-.|.+.+..|++.|++|+.++.+.++.+.|.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcc
Confidence            5889999999999999999999999999999998887753

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.86  E-value=0.13  Score=48.37  Aligned_cols=33  Identities=33%  Similarity=0.572  Sum_probs=29.7

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      ...|+|||+|.+|.++++.+++.|.+|.|+.+.
T Consensus        19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            346999999999999999999999999999764

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=88.82  E-value=0.3  Score=44.07  Aligned_cols=79  Identities=14%  Similarity=0.029  Sum_probs=51.4

Q ss_pred             CEEEEEecch----HHHHHHHHHHhC--CCeEE-EEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccc-cCCceEE
Q 011136          382 KLFVVIGAGG----AGKALAYGAKAK--GARVV-IANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFT-WHLKFFI  453 (493)
Q Consensus       382 ~~vlvlGaGG----aara~~~~L~~~--g~~i~-v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~-~~~~~~i  453 (493)
                      -++.|||+|+    +++.-+.++...  +++|+ |++|+.++++++++.++....        .+..+.++- ..++.++
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~iD~   88 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHA--------TGFDSLESFAQYKDIDM   88 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTC--------EEESCHHHHHHCTTCSE
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccc--------eeecchhhcccccccce
Confidence            4799999987    556556666654  35655 899999999999998864431        111222211 1245677


Q ss_pred             EEeccccCCchhhHh
Q 011136          454 AANIIHLGNHLEWVT  468 (493)
Q Consensus       454 ~~n~tplG~~~~~~~  468 (493)
                      +.-+||-..|.+...
T Consensus        89 V~i~tp~~~h~~~~~  103 (237)
T d2nvwa1          89 IVVSVKVPEHYEVVK  103 (237)
T ss_dssp             EEECSCHHHHHHHHH
T ss_pred             eeccCCCcchhhHHH
Confidence            777888777766554

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.81  E-value=0.19  Score=41.44  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=31.9

Q ss_pred             CCCEEEEEecch-----------HHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          380 AGKLFVVIGAGG-----------AGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       380 ~~~~vlvlGaGG-----------aara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      +.|+|||||+|+           ++--++.+|++.|+++.++|-+++..
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TV   54 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATI   54 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCG
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhh
Confidence            358999999986           56778899999999999999887653

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.80  E-value=0.14  Score=45.16  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=29.5

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      ..++|||+|.+|..++..++++|.+|.|+.+.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            35899999999999999999999999999875

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=88.79  E-value=0.15  Score=46.84  Aligned_cols=34  Identities=32%  Similarity=0.465  Sum_probs=30.3

Q ss_pred             CCEEEEEecchHHHHHHHHHHh-CCCeEEEEeCCh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKA-KGARVVIANRTY  414 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~-~g~~i~v~~R~~  414 (493)
                      ...|+|||||.+|.++|+.|++ .|.+|+|+.+..
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            4579999999999999999987 599999999864

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.70  E-value=0.61  Score=42.24  Aligned_cols=92  Identities=14%  Similarity=0.054  Sum_probs=55.2

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHH-hCCCeEE-EEeC----------ChHHHHHHH
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAK-AKGARVV-IANR----------TYGESLTFL  421 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~-~~g~~i~-v~~R----------~~~~a~~la  421 (493)
                      +.|...+++..+..       .+.++++++++|-|.|-+|+.++..|. +.|++|+ +.+.          +.+....+.
T Consensus        11 g~Gv~~~~~~~~~~-------~~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~   83 (234)
T d1b26a1          11 GRGVKVCAGLAMDV-------LGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYK   83 (234)
T ss_dssp             HHHHHHHHHHHHHH-------TTCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-------cCCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHH
Confidence            56777766654432       125789999999999999999999996 4688654 3332          333333332


Q ss_pred             HHhhhhhhcccccceEEEEeecccccCCceEEEEec
Q 011136          422 RLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANI  457 (493)
Q Consensus       422 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~  457 (493)
                      +..+.    ...+.....+ +.++.|..+.+|++||
T Consensus        84 ~~~~~----~~~~~~~~~~-~~~~~~~~~~DI~~Pc  114 (234)
T d1b26a1          84 KEHGT----VVTYPKGERI-TNEELLELDVDILVPA  114 (234)
T ss_dssp             HHSSC----STTCSSCEEE-CHHHHHTSCCSEEEEC
T ss_pred             Hhhcc----eeccccceee-ccccccccccceeecc
Confidence            22111    1111122222 2346777788999966

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=88.54  E-value=0.26  Score=42.29  Aligned_cols=43  Identities=21%  Similarity=0.219  Sum_probs=36.4

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGESLTFLR  422 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~  422 (493)
                      ++.+|||-|+ ||.|.+++.-.+..|++|+.+.|+.+|.+.+.+
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~   66 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ   66 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHh
Confidence            3567999995 999999998888899999999999888877644

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=88.44  E-value=0.16  Score=46.38  Aligned_cols=35  Identities=17%  Similarity=0.234  Sum_probs=30.5

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      .+||||.|+ |-.|+.++.+|.+.|++|+++.|+..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            357999997 77999999999999999999999643

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.42  E-value=0.36  Score=41.95  Aligned_cols=49  Identities=24%  Similarity=0.340  Sum_probs=41.9

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhh
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSW  426 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~  426 (493)
                      .+++|+|.|||.|--|+|=+..|.+.|++|+|-.|.-.+..+.|+.-++
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf   61 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGL   61 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTC
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcc
Confidence            4678999999999999999999999999999999987776666665443

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.04  E-value=2.6  Score=36.86  Aligned_cols=153  Identities=13%  Similarity=0.072  Sum_probs=96.6

Q ss_pred             cEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 011136           24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDV  103 (493)
Q Consensus        24 ~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l  103 (493)
                      .+|||.+-..+.++++.-+++. ...+|++|+=.+++...-. +.++.+++..+.|+++-...      ++.+...+ ..
T Consensus         3 ~ki~lAlD~~~~~~a~~l~~~~-~~~v~~iKig~~l~~~~G~-~~v~~l~~~~~~~i~~D~K~------~DIg~t~~-~~   73 (212)
T d1km4a_           3 NRLILAMDLMNRDDALRVTGEV-REYIDTVKIGYPLVLSEGM-DIIAEFRKRFGCRIIADFAV------ADIPETNE-KI   73 (212)
T ss_dssp             GGEEEEECCSSHHHHHHHHHHH-TTTCSEEEEEHHHHHHHCT-HHHHHHHHHHCCEEEEEEEE------CSCHHHHH-HH
T ss_pred             CCeEEEecCCCHHHHHHHHHHh-CCCCcEEEECHHHHHhcCH-HHHHHHHHhcccceehhhhh------hccccHHH-Hh
Confidence            4589999999999999999886 5679999998887653222 45777776668888876654      23332222 34


Q ss_pred             HHHHHHhCCcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCH-----HHHHHHHHHHHHcCCCEEEEEeecC
Q 011136          104 LRLAMELGADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSV-----EDLSNLVARIQASGADIVKFATTAL  177 (493)
Q Consensus       104 l~~~l~~~~dyIDIEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~-----~el~~~~~~~~~~gaDIvKia~~a~  177 (493)
                      .+.+.+.|+|++.|=-..+.+.++.... ++..+.++++-.+..  .++.     ....+..+.....|.+  -+++...
T Consensus        74 ~~~~~~~gad~~TVh~~~g~~~i~~~~~~a~~~~~~~~~l~~~s--~~~~~~~~~~~~~~~~~~~~~~g~~--g~v~~~~  149 (212)
T d1km4a_          74 CRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMS--HPGAEMFIQGAADEIARMGVDLGVK--NYVGPST  149 (212)
T ss_dssp             HHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECSCS--SGGGGTTHHHHHHHHHHHHHHHTCC--EEECCTT
T ss_pred             HhhhccccccEEEEeccCChHHHHHHHHHHHhcCCccccchhhc--chhhhhhhhhHHHHHHHHHHHhCCc--ccccccc
Confidence            4566788999999988777776666552 222344554422211  1111     1233334444566655  4577778


Q ss_pred             CHhHHHHHHHHh
Q 011136          178 DITDVARVFQIT  189 (493)
Q Consensus       178 s~~D~~~l~~~~  189 (493)
                      ++++...+.+..
T Consensus       150 ~~~~i~~ir~~~  161 (212)
T d1km4a_         150 RPERLSRLREII  161 (212)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHhhhhhcc
Confidence            888876665554

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.96  E-value=0.3  Score=43.76  Aligned_cols=38  Identities=21%  Similarity=0.186  Sum_probs=32.8

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHh--------------------CCC-eEEEEeCCh
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKA--------------------KGA-RVVIANRTY  414 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~--------------------~g~-~i~v~~R~~  414 (493)
                      ..+.+|+|+|||.|-+|.=++..|.+                    .|+ +|+++.|..
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            45679999999999999999988876                    588 999999853

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.90  E-value=0.22  Score=43.44  Aligned_cols=30  Identities=37%  Similarity=0.564  Sum_probs=28.1

Q ss_pred             EEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          384 FVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      ++|||+|.+|..++..++++|.+|.|+.+.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            899999999999999999999999999764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.78  E-value=0.33  Score=43.17  Aligned_cols=37  Identities=35%  Similarity=0.441  Sum_probs=31.3

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHH--------------------hCCC-eEEEEeCC
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAK--------------------AKGA-RVVIANRT  413 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~--------------------~~g~-~i~v~~R~  413 (493)
                      ..+.+++|+|||.|-+|.-+|..|.                    ..|+ +|+++.|.
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RR   92 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR   92 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEEC
Confidence            3467899999999999999887665                    6788 99999984

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=87.71  E-value=0.2  Score=45.21  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=31.3

Q ss_pred             CCEEEEEec-chHHHHHHHHHHhCCCeEEEEeCChHH
Q 011136          381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYGE  416 (493)
Q Consensus       381 ~~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~~~  416 (493)
                      .|||||.|| |-.|+.++.+|.+.|++|+++.|+...
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            478999998 669999999999999999999986443

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.15  E-value=1.5  Score=38.78  Aligned_cols=99  Identities=15%  Similarity=0.069  Sum_probs=51.4

Q ss_pred             CCCEEEEE-ec---chHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEE
Q 011136          380 AGKLFVVI-GA---GGAGKALAYGAKAKGARVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAA  455 (493)
Q Consensus       380 ~~~~vlvl-Ga---GGaara~~~~L~~~g~~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~  455 (493)
                      +.++++|+ |.   ||=|-+++..|.+.|++|.++-....+.......+.....  .   ...++.+.+..+..++.+++
T Consensus        39 ~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~dlII  113 (211)
T d2ax3a2          39 SDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKK--F---GGKVVEQFEPSILNEFDVVV  113 (211)
T ss_dssp             TTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSCCHHHHHHHHHHHH--T---TCCEESCCCGGGGGGCSEEE
T ss_pred             cCCcEEEEECCCCCchhHHHHHHHHHhcCCeeEEEecCccCCcHHHHHHHHHHH--c---CCccccccccccccCceEEE
Confidence            34565555 64   6788888999999999777665432222222222111110  0   11122333333336789999


Q ss_pred             ecc-ccCCc--hhhHhhhhhHHHHhhccceEe
Q 011136          456 NII-HLGNH--LEWVTAAFNLFFYLTCNSYVV  484 (493)
Q Consensus       456 n~t-plG~~--~~~~~~~~~~~~~~~~~~~~~  484 (493)
                      +|. +.|.+  +..-.+.++..+ +.++.+||
T Consensus       114 Dal~G~Gl~~~l~~~~~~~i~~i-N~~~~~vl  144 (211)
T d2ax3a2         114 DAIFGTGLRGEITGEYAEIINLV-NKSGKVVV  144 (211)
T ss_dssp             EESCCTTCCSCCCHHHHHHHHHH-HHSCCEEE
T ss_pred             EecccCCccccchHHHHHHHHHH-Hhhcccee
Confidence            987 66666  333333333333 23555554

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=86.99  E-value=0.27  Score=44.59  Aligned_cols=30  Identities=33%  Similarity=0.579  Sum_probs=28.5

Q ss_pred             EEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          384 FVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      ++|||+|.+|..++..++++|.+|.|+.+.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            799999999999999999999999999875

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.97  E-value=0.045  Score=48.45  Aligned_cols=30  Identities=30%  Similarity=0.272  Sum_probs=25.4

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC------eEEEEeC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA------RVVIANR  412 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~------~i~v~~R  412 (493)
                      +|+|||||-+|.++|+.|++.|.      ++.++.+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            69999999999999999999884      4666553

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.85  E-value=0.61  Score=40.23  Aligned_cols=53  Identities=19%  Similarity=0.224  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeCChHHH
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRTYGES  417 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R~~~~a  417 (493)
                      -.|++..|++.           +.+++||+|+|+|.+. .||-++.-|.+.|+.|++++..-..-
T Consensus        23 p~aii~lL~~~-----------~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l   76 (170)
T d1a4ia1          23 PKGCLELIKET-----------GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHL   76 (170)
T ss_dssp             HHHHHHHHHTT-----------TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSH
T ss_pred             HHHHHHHHHHh-----------CcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccH
Confidence            45777777653           2678999999999988 99999999999999999999855443

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.78  E-value=0.44  Score=44.19  Aligned_cols=43  Identities=21%  Similarity=0.242  Sum_probs=31.4

Q ss_pred             CEEEEE-ec-chHHHHHHHHHHhCCCe---EEEEeCChHHHHHHHHHh
Q 011136          382 KLFVVI-GA-GGAGKALAYGAKAKGAR---VVIANRTYGESLTFLRLM  424 (493)
Q Consensus       382 ~~vlvl-Ga-GGaara~~~~L~~~g~~---i~v~~R~~~~a~~la~~~  424 (493)
                      |||+|| |+ +|.|++++..|++.|++   +.+..|+.++.+++.+..
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~   49 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAA   49 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHH
Confidence            566655 65 89999999999999974   555677766666665543

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.71  E-value=3  Score=36.89  Aligned_cols=63  Identities=14%  Similarity=0.187  Sum_probs=47.7

Q ss_pred             cEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe-c--CCCCCCc-hhHHHHHHhhCCCcEEEEecc
Q 011136           24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRL-D--GLKNFNP-RENIKTLIKESPVPTLFTYRP   86 (493)
Q Consensus        24 ~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl-D--~l~~~~~-~~~l~~l~~~~~~PiI~T~R~   86 (493)
                      -+|+.+|...|..++..+++.+.+.|+|.+.+.+ |  +.+++.- .+.++.+++.+.+|+=+|+-.
T Consensus         2 ~kIspSil~~d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~s~g~~~i~~i~~~t~~~~dvHLMv   68 (217)
T d2flia1           2 LKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMV   68 (217)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEES
T ss_pred             cEEEeehhhcCHHHHHHHHHHHHHcCCCEEEEEcccCcCCCccccCHHHHHHHHhcCCCceEeEEEe
Confidence            4789999999999999999998888999999943 3  1222211 356777877788888888764

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.56  E-value=4.8  Score=36.65  Aligned_cols=147  Identities=15%  Similarity=0.179  Sum_probs=91.1

Q ss_pred             CCHHHHHHHHHhhhhcCCCEEEEEecCC----CCCCchhHHHHHH---hh-CCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 011136           33 ESVDKMVVDMGKANASGADLVEIRLDGL----KNFNPRENIKTLI---KE-SPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (493)
Q Consensus        33 ~~~~e~~~~~~~~~~~~aD~vElRlD~l----~~~~~~~~l~~l~---~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (493)
                      .+.+++++.++++.+.|||.|.+=.---    ...+..+++.++.   +. ....+++.+-|            -+.++.
T Consensus        23 ~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~~~~iSIDT------------~~~eVa   90 (264)
T d1ad1a_          23 NNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGFDVKISVDT------------FRSEVA   90 (264)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEEC------------SCHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhcccCcccchhh------------hhHHHH
Confidence            4788999999999999999998854321    1122334444332   21 23345556655            245688


Q ss_pred             HHHHHhCCcEEE-EE-cccccchhHHHhhcCCCCcEEEEEcccCCCCC-C---HHH----HHHHHHHHHHcCCCEEEEEe
Q 011136          105 RLAMELGADYID-VE-LQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP-S---VED----LSNLVARIQASGADIVKFAT  174 (493)
Q Consensus       105 ~~~l~~~~dyID-IE-l~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp-~---~~e----l~~~~~~~~~~gaDIvKia~  174 (493)
                      +.+++.|+++|- |- ...+++.. .+++.  .+..+|+-|.  .++| .   ..+    +.+.++++.+.|.+--+|..
T Consensus        91 ~~al~~Ga~iINDVs~g~~d~~~~-~~va~--~~~~~ilmH~--~~~~~~~~~~~~v~~~~~~~~~~~~~~Gi~~~~Iil  165 (264)
T d1ad1a_          91 EACLKLGVDIINDQWAGLYDHRMF-QVVAK--YDAEIVLMHN--GNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWL  165 (264)
T ss_dssp             HHHHHTTCCEEEETTTTSSCTHHH-HHHHH--TTCEEEEECC--CCTTCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             HHHHhcCCcEeeccccccccccHH-HHHhh--cCcceeeeee--ccccccCccchhhhhHHHHHHHHHHhhccccceEEe
Confidence            899999999885 53 23334333 34432  4567777543  2333 1   222    45556678888877677776


Q ss_pred             -----ecCCHhHHHHHHHHhc---cCCCCE
Q 011136          175 -----TALDITDVARVFQITV---HSQVPI  196 (493)
Q Consensus       175 -----~a~s~~D~~~l~~~~~---~~~~Pl  196 (493)
                           ..++.++++.+++-+.   ..+.|+
T Consensus       166 DPGiGFgKt~~~n~~ll~~l~~~~~~g~Pi  195 (264)
T d1ad1a_         166 DPGIGFAKTRNEEAEVMARLDELVATEYPV  195 (264)
T ss_dssp             ECCTTSSCCHHHHHHHHHCHHHHHTTCSCB
T ss_pred             ccCcCccccchhHHHHHHHHHHhhccCCce
Confidence                 5689999999987543   346674

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=86.55  E-value=0.72  Score=39.58  Aligned_cols=54  Identities=20%  Similarity=0.229  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeCChHHHH
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRTYGESL  418 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R~~~~a~  418 (493)
                      -.|++.-|++.           +.+++||+++|+|-+. .|+-++.-|.+.|+.|++++..-..-+
T Consensus        21 p~aI~~lL~~y-----------~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~   75 (166)
T d1b0aa1          21 PRGIVTLLERY-----------NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR   75 (166)
T ss_dssp             HHHHHHHHHHT-----------TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH
T ss_pred             HHHHHHHHHHc-----------CcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhH
Confidence            35777777653           2678999999999999 999999999999999999987554433

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.33  E-value=0.56  Score=37.42  Aligned_cols=35  Identities=23%  Similarity=0.426  Sum_probs=31.8

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      +.++.|||+|--||-++.+..++|+++.+++.+.+
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            56899999999999999999999999999998654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=86.28  E-value=0.28  Score=46.40  Aligned_cols=30  Identities=23%  Similarity=0.266  Sum_probs=28.4

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R  412 (493)
                      .|+|||+|-+|..+|+.|++.|.+|.|+.|
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence            489999999999999999999999999987

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.25  E-value=11  Score=33.42  Aligned_cols=140  Identities=18%  Similarity=0.096  Sum_probs=89.0

Q ss_pred             CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh
Q 011136           32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL  110 (493)
Q Consensus        32 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~  110 (493)
                      ..|.+++..-++++.+.+..+|=+.--         .+...++.. +++ +.|+=.-+.|..   +.+.+..-.+.+++.
T Consensus        16 ~~t~~~i~~lc~~A~~~~~~aVcV~P~---------~v~~a~~~l~~vk-v~tVigFP~G~~---~~~~K~~E~~~Ai~~   82 (225)
T d1mzha_          16 HLSEKEIEEFVLKSEELGIYAVCVNPY---------HVKLASSIAKKVK-VCCVIGFPLGLN---KTSVKVKEAVEAVRD   82 (225)
T ss_dssp             TCCHHHHHHHHHHHHHTTCSEEEECGG---------GHHHHHHHCSSSE-EEEEESTTTCCS---CHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCCcEEEECHH---------HHHHHHhhccCCc-eEEEeccCCCCC---cHHHHHHHHHHHHHc
Confidence            445788888888887777776655321         233333322 333 445545566553   557777778899999


Q ss_pred             CCcEEEEEcccc-------cch---hHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe----e
Q 011136          111 GADYIDVELQVA-------REF---NDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT----T  175 (493)
Q Consensus       111 ~~dyIDIEl~~~-------~~~---~~~l~~-~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia~----~  175 (493)
                      |+|-||+=++..       +.+   ++++.. .+..-.|||+--..    .+.+++....+-+.+.|+|.+|-.+    .
T Consensus        83 GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~----L~~~ei~~a~~~a~~aGadfiKTSTG~~~~  158 (225)
T d1mzha_          83 GAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPY----LNEEEIKKAVEICIEAGADFIKTSTGFAPR  158 (225)
T ss_dssp             TCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGG----CCHHHHHHHHHHHHHHTCSEEECCCSCSSS
T ss_pred             CCCeEEEeechhhhhcccHHHHHHHHHHHHHhccCceeehhhhhcc----CCHHHHHHHHHHHHHcccceEeecCCCCCC
Confidence            999999976643       112   333333 33344588886442    2567888888889999999999543    3


Q ss_pred             cCCHhHHHHHHHH
Q 011136          176 ALDITDVARVFQI  188 (493)
Q Consensus       176 a~s~~D~~~l~~~  188 (493)
                      ..+++|+..+.+.
T Consensus       159 gat~e~v~~m~~~  171 (225)
T d1mzha_         159 GTTLEEVRLIKSS  171 (225)
T ss_dssp             CCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            4577777655544

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.12  E-value=0.44  Score=37.03  Aligned_cols=43  Identities=19%  Similarity=0.103  Sum_probs=33.9

Q ss_pred             CCCEEEEEecchHHHHH-HHHHHhCCCeEEEEeCC-hHHHHHHHH
Q 011136          380 AGKLFVVIGAGGAGKAL-AYGAKAKGARVVIANRT-YGESLTFLR  422 (493)
Q Consensus       380 ~~~~vlvlGaGGaara~-~~~L~~~g~~i~v~~R~-~~~a~~la~  422 (493)
                      +.+++.+||-||+|.+. |..|.+.|++|+-.++. ....+.|.+
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~   51 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQ   51 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHH
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHH
Confidence            46899999999999665 78889999999999986 334444443

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.97  E-value=0.18  Score=47.20  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=29.8

Q ss_pred             CCEEEEEecchHHHHHHHHHHhC--CCeEEEEeCCh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAK--GARVVIANRTY  414 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~--g~~i~v~~R~~  414 (493)
                      ++.|+|||+|.+|.++++.|++.  |.+|+|+.+..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            45699999999999999999864  78999999864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.94  E-value=1.4  Score=34.78  Aligned_cols=48  Identities=13%  Similarity=0.007  Sum_probs=34.9

Q ss_pred             CCEEEEEecchHHHHHHHHHHhCC---CeEEEEeCC--------hHHHHHHHHHhhhhh
Q 011136          381 GKLFVVIGAGGAGKALAYGAKAKG---ARVVIANRT--------YGESLTFLRLMSWLL  428 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~~g---~~i~v~~R~--------~~~a~~la~~~~~~~  428 (493)
                      .++++|+|+|.+|--+|..|..+|   .+|+++.|.        .+-++.+.+.+...+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~G   78 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANG   78 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcC
Confidence            579999999999999998877665   379999873        334444555555544

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.88  E-value=0.32  Score=41.95  Aligned_cols=31  Identities=10%  Similarity=0.089  Sum_probs=27.9

Q ss_pred             EEEEEecchHHHHHHHHHHhCCC--eEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGA--RVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~--~i~v~~R~  413 (493)
                      ||+|||+|-+|-.+|..|.+++.  +|+++.|+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            69999999999999999998864  89999875

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=85.58  E-value=0.26  Score=45.69  Aligned_cols=32  Identities=25%  Similarity=0.286  Sum_probs=28.1

Q ss_pred             EEEEEecchHHHHHHHHHH-----hCCCeEEEEeCCh
Q 011136          383 LFVVIGAGGAGKALAYGAK-----AKGARVVIANRTY  414 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~-----~~g~~i~v~~R~~  414 (493)
                      .|+|+|+|.+|.++|..|+     ..|++|+|+.|..
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            5999999999999999996     4688999999853

>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Neisseria meningitidis [TaxId: 487]

Probab=85.49  E-value=8  Score=35.07  Aligned_cols=176  Identities=15%  Similarity=0.209  Sum_probs=104.0

Q ss_pred             CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC----CC------Cch---hHHHHHHhhCCCcEEEEeccCC
Q 011136           22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLK----NF------NPR---ENIKTLIKESPVPTLFTYRPIW   88 (493)
Q Consensus        22 ~~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~----~~------~~~---~~l~~l~~~~~~PiI~T~R~~~   88 (493)
                      +.+..|  |+.-|...+.    .+.+.|+|++=+= |-+.    ..      +..   ...+.++|..+.+++..--+. 
T Consensus        14 g~ki~~--lTayd~~~A~----~ae~agiDiilVG-DSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf-   85 (260)
T d1o66a_          14 GEKIAM--LTAYESSFAA----LMDDAGVEMLLVG-DSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPF-   85 (260)
T ss_dssp             TCCEEE--EECCSHHHHH----HHHHTTCCEEEEC-TTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCT-
T ss_pred             CCcEEE--EeCCCHHHHH----HHHHcCCCEEEEc-CCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchhh-
Confidence            466777  4555543322    2235689998553 3321    11      111   235567777776766554322 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccc-cchhHHHhhcCCCCcEEEEEccc-------------CCCCCCHHH
Q 011136           89 EGGQYDGDENERVDVLRLAMELGADYIDVELQVA-REFNDSIRGKKPEKCKVIVSSHN-------------YQYTPSVED  154 (493)
Q Consensus        89 eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~~~-~~~~~~l~~~~~~~~kiI~S~H~-------------f~~tp~~~e  154 (493)
                        |.+..+.++..+--....+.|+|.|-+|-... .+.++.|.   +.++.|+++.=-             ..++.+..+
T Consensus        86 --~sy~~~~~~~~~a~~~~~~~gadavk~eg~~~~~~~i~~l~---~~gIPV~gHiGl~Pq~~~~~gG~r~~Gk~~e~~~  160 (260)
T d1o66a_          86 --GAYQQSKEQAFAAAAELMAAGAHMVKLEGGVWMAETTEFLQ---MRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQA  160 (260)
T ss_dssp             --TSSSSCHHHHHHHHHHHHHTTCSEEEEECSGGGHHHHHHHH---HTTCCEEEEEESCGGGTTC-----------CHHH
T ss_pred             --hhhcchhHHHHHHHHHHHHhhhhhccccchhhhhHHHHHHH---HcCCeeEeecccccchheecCcceeccccchhHH
Confidence              34566777777766677788999999997643 34555554   358888886421             112223344


Q ss_pred             HHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEecCCc--chhhhhhccccC
Q 011136          155 LSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGER--GLISRILCAKFG  216 (493)
Q Consensus       155 l~~~~~~~~~~gaDIvKia~~a~s~~D~~~l~~~~~~~~~PlIa~~MG~~--G~~SRi~~~~~G  216 (493)
                      +.+....+++.||..+=+=+.|   +++.+.  ..+...+|+|.|+-|+.  |++ .++..++|
T Consensus       161 l~~~a~~le~AGa~~ivlE~Vp---~~va~~--It~~~~iptIgIGaG~~cDGQv-Lv~~DllG  218 (260)
T d1o66a_         161 LLNDAKAHDDAGAAVVLMECVL---AELAKK--VTETVSCPTIGIGAGADCDGQV-LVMHDMLG  218 (260)
T ss_dssp             HHHHHHHHHHTTCSEEEEESCC---HHHHHH--HHHHCSSCEEEESSCSCSSEEE-ECHHHHTT
T ss_pred             HHHHHHHHHHhhhhehhhhhcc---HHHHHH--HHhhhcceeeeccCCCCCCeeE-EehHHhhC
Confidence            7777778888999876655554   444222  35567999999999886  444 44455555

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.43  E-value=0.47  Score=40.67  Aligned_cols=81  Identities=9%  Similarity=-0.088  Sum_probs=43.7

Q ss_pred             EEEEEecc--hHHHHHHHHHHhC---CC-eEEEEeCChHH--HHHHHHHhhhhhhcccccceEEEEeecccccCCceEEE
Q 011136          383 LFVVIGAG--GAGKALAYGAKAK---GA-RVVIANRTYGE--SLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIA  454 (493)
Q Consensus       383 ~vlvlGaG--Gaara~~~~L~~~---g~-~i~v~~R~~~~--a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~  454 (493)
                      |+.|||||  |.+.+++.-+...   .. +|+++++++++  ++.+-..............++..-.+..+.. .+.+++
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al-~gaDvV   81 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRAL-DGADFV   81 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH-TTCSEE
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhc-CCCCEE
Confidence            78999999  5555555544432   23 99999998755  3333221111100000011233323333333 578899


Q ss_pred             EeccccCCch
Q 011136          455 ANIIHLGNHL  464 (493)
Q Consensus       455 ~n~tplG~~~  464 (493)
                      +++.+.|-.+
T Consensus        82 v~ta~~~~~~   91 (169)
T d1s6ya1          82 TTQFRVGGLE   91 (169)
T ss_dssp             EECCCTTHHH
T ss_pred             EEccccCCCC
Confidence            9998887665

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.36  E-value=0.96  Score=41.00  Aligned_cols=94  Identities=21%  Similarity=0.136  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhhhcccCCCCCCcccccCCCEEEEEecchHHHHHHHHHHh-CCCe-EEEEeC----------ChHHHHHHH
Q 011136          354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA-KGAR-VVIANR----------TYGESLTFL  421 (493)
Q Consensus       354 ~~G~~~~l~~~l~~~~~~~~~~~~~l~~~~vlvlGaGGaara~~~~L~~-~g~~-i~v~~R----------~~~~a~~la  421 (493)
                      +.|...+++..+...+      ..+++|++|+|-|.|-+|..++..|.+ .|++ |.+.+.          +.+...+..
T Consensus        11 g~Gv~~~~~~~~~~~g------~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~   84 (239)
T d1gtma1          11 ARGASYTIREAAKVLG------WDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWK   84 (239)
T ss_dssp             HHHHHHHHHHHHHHTT------CSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhC------CCCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHH
Confidence            6777777766544211      135899999999999999999999875 5775 444443          233333322


Q ss_pred             HHhhhhhhcccccceEEEEeecccccCCceEEEEecc
Q 011136          422 RLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANII  458 (493)
Q Consensus       422 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~t  458 (493)
                      ......    ..++....+ +.++-|..+.+|++||-
T Consensus        85 ~~~~~~----~~~~~~~~~-~~~~i~~~~~DIl~PcA  116 (239)
T d1gtma1          85 NEHGSV----KDFPGATNI-TNEELLELEVDVLAPAA  116 (239)
T ss_dssp             HHHSSS----TTCTTSEEE-CHHHHHHSCCSEEEECS
T ss_pred             Hhcccc----ccCCCCeee-cccccccccccEEeecc
Confidence            211111    111112222 33466777888988664

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=85.05  E-value=0.23  Score=46.71  Aligned_cols=30  Identities=37%  Similarity=0.496  Sum_probs=27.8

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R  412 (493)
                      -|+|||+|.+|..+|..+++.|.+|.|+.+
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK   38 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSK   38 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeC
Confidence            499999999999999999999999988875

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=84.97  E-value=0.17  Score=43.33  Aligned_cols=70  Identities=10%  Similarity=-0.009  Sum_probs=47.2

Q ss_pred             EEEEEecchHHHHHHHHHHhCC-Ce-EEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEecccc
Q 011136          383 LFVVIGAGGAGKALAYGAKAKG-AR-VVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAANIIHL  460 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g-~~-i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n~tpl  460 (493)
                      |+.|+|+|.+|+..+.++.+.. ++ +.|++|+.++....    .           +....+.+ .+..+.++++.+||-
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~----~-----------~~~~~~~~-~~~~~~D~Vvi~tp~   68 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKT----P-----------VFDVADVD-KHADDVDVLFLCMGS   68 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSS----C-----------EEEGGGGG-GTTTTCSEEEECSCT
T ss_pred             eEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccccc----c-----------cccchhhh-hhccccceEEEeCCC
Confidence            7999999999999999998764 54 66888886543211    1           11112222 233567888999999


Q ss_pred             CCchhhHh
Q 011136          461 GNHLEWVT  468 (493)
Q Consensus       461 G~~~~~~~  468 (493)
                      ..+.+...
T Consensus        69 ~~h~~~a~   76 (170)
T d1f06a1          69 ATDIPEQA   76 (170)
T ss_dssp             TTHHHHHH
T ss_pred             cccHHHHH
Confidence            98876654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=84.55  E-value=0.39  Score=44.91  Aligned_cols=30  Identities=23%  Similarity=0.330  Sum_probs=28.2

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R  412 (493)
                      -++|||+|-+|..+|..|++.|.+|.|+.+
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            489999999999999999999999999975

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=84.55  E-value=0.51  Score=37.44  Aligned_cols=33  Identities=27%  Similarity=0.256  Sum_probs=27.4

Q ss_pred             CCEEEEEecchHHHHHHHHHHh---CCCeEEEEeCC
Q 011136          381 GKLFVVIGAGGAGKALAYGAKA---KGARVVIANRT  413 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~~---~g~~i~v~~R~  413 (493)
                      .++++|+|+|.+|--++..|..   .|.+|+++.|.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~   53 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRG   53 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccc
Confidence            4799999999999988876654   47799999884

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.42  E-value=0.38  Score=39.98  Aligned_cols=30  Identities=23%  Similarity=0.360  Sum_probs=26.5

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      |++|||+|-+|-.++..|++ +.+|+|+.|.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~   31 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKE   31 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecc
Confidence            79999999999999999965 6699999874

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.11  E-value=0.64  Score=38.86  Aligned_cols=44  Identities=25%  Similarity=0.249  Sum_probs=33.6

Q ss_pred             EEEEEe-cchHHHHHHHHHH-hCCC--eEEEEeCChHHHHHHHHHhhhh
Q 011136          383 LFVVIG-AGGAGKALAYGAK-AKGA--RVVIANRTYGESLTFLRLMSWL  427 (493)
Q Consensus       383 ~vlvlG-aGGaara~~~~L~-~~g~--~i~v~~R~~~~a~~la~~~~~~  427 (493)
                      |+.|+| +|..|.++++.|+ +.+.  +|.+++... +++..+.++...
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~   49 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHI   49 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCC
Confidence            689999 5999999999986 4463  899999864 666666666543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.03  E-value=0.47  Score=42.13  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=32.0

Q ss_pred             CCCEEEEEec-chHHHHHHHHHHhCCC--eEEEEeCChHH
Q 011136          380 AGKLFVVIGA-GGAGKALAYGAKAKGA--RVVIANRTYGE  416 (493)
Q Consensus       380 ~~~~vlvlGa-GGaara~~~~L~~~g~--~i~v~~R~~~~  416 (493)
                      ++|+|||.|| |-.|+.++..|.+.|.  +|++++|+..+
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~   52 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT   52 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhh
Confidence            5789999998 7799999999998884  89999997543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.96  E-value=0.58  Score=38.82  Aligned_cols=35  Identities=23%  Similarity=0.164  Sum_probs=30.5

Q ss_pred             CCEEEEE--ecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          381 GKLFVVI--GAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       381 ~~~vlvl--GaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      ++.++|+  |+|-+|..++..|+++|++|+++.|...
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            6778887  7777999999999999999999998653

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=83.90  E-value=0.4  Score=45.40  Aligned_cols=30  Identities=27%  Similarity=0.300  Sum_probs=28.3

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeC
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANR  412 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R  412 (493)
                      .|+|||+|-+|..+|+.|++.|.+|.|+.|
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            599999999999999999999999999986

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=83.85  E-value=0.42  Score=38.88  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       378 ~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      -++||+|+|+|.|-.|--.+..|.+...+|+++-|..
T Consensus        24 ~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          24 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             HhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            4589999999999999999999988777999998854

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=83.67  E-value=0.46  Score=38.63  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=31.5

Q ss_pred             cccCCCEEEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       377 ~~l~~~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      ..++||+|+|+|.|-.|--.+..|++...+|+++-|.
T Consensus        26 ~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~   62 (126)
T d1fl2a2          26 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA   62 (126)
T ss_dssp             GGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSS
T ss_pred             hhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecc
Confidence            3468999999999999988888899885599998774

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=83.24  E-value=3.4  Score=35.11  Aligned_cols=108  Identities=13%  Similarity=0.053  Sum_probs=69.7

Q ss_pred             CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHH
Q 011136           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERV  101 (493)
Q Consensus        23 ~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~  101 (493)
                      .|++||.+-..++++.+..+++. ..++|.+++-.++...+. .+.+..+++.. ..++++..-.       ......  
T Consensus         1 ~p~l~vAlD~~~~~~~~~~~~~~-~~~vdiikig~~~~~~~G-~~~i~~l~~~~~~~~i~~d~k~-------~d~~~~--   69 (213)
T d1q6oa_           1 LPMLQVALDNQTMDSAYETTRLI-AEEVDIIEVGTILCVGEG-VRAVRDLKALYPHKIVLADAKI-------ADAGKI--   69 (213)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHH-GGGCSEEEECHHHHHHHC-THHHHHHHHHCTTSEEEEEEEE-------CSCHHH--
T ss_pred             CCcEEEEecCCCHHHHHHHHHhc-CCCccEEEeCeeccccCC-HHHHHHHHHhcccccceeEEee-------ccchHH--
Confidence            48999999999999999999886 568999999887653322 23566777654 5666665542       112221  


Q ss_pred             HHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEE
Q 011136          102 DVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVS  142 (493)
Q Consensus       102 ~ll~~~l~~~~dyIDIEl~~~~~~~~~l~-~~~~~~~kiI~S  142 (493)
                       ..+.+.+.|+|++.+=.....+.++... ..+..+.++.+.
T Consensus        70 -~~~~~~~~gad~vtvh~~~g~~~~~~~~~~~~~~~~~~~v~  110 (213)
T d1q6oa_          70 -LSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIE  110 (213)
T ss_dssp             -HHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             -HHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHcCCceecc
Confidence             2234467789999987666655554443 222345555444

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.16  E-value=0.57  Score=43.04  Aligned_cols=33  Identities=30%  Similarity=0.182  Sum_probs=29.3

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      |+|||.|+ |-.|+.++..|.+.|++|+.++|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            68999999 5599999999999999999988854

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.78  E-value=0.59  Score=38.26  Aligned_cols=33  Identities=30%  Similarity=0.317  Sum_probs=27.5

Q ss_pred             CCEEEEEecchHHHHHHHHHH----hCCCeEEEEeCC
Q 011136          381 GKLFVVIGAGGAGKALAYGAK----AKGARVVIANRT  413 (493)
Q Consensus       381 ~~~vlvlGaGGaara~~~~L~----~~g~~i~v~~R~  413 (493)
                      .++++|+|+|.+|--++.+|+    +.|.+|+++.+.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~   73 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPE   73 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccc
Confidence            579999999999988888885    468899988763

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.72  E-value=0.49  Score=44.24  Aligned_cols=31  Identities=29%  Similarity=0.488  Sum_probs=26.3

Q ss_pred             EEEEEecchHHHHHHHHHHh----CCCeEEEEeCC
Q 011136          383 LFVVIGAGGAGKALAYGAKA----KGARVVIANRT  413 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~----~g~~i~v~~R~  413 (493)
                      -|||||+|.+|.+++..+++    .|.+|.|+.+.
T Consensus        23 DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          23 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            49999999999999888864    68899999763

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=82.70  E-value=0.62  Score=42.12  Aligned_cols=30  Identities=30%  Similarity=0.512  Sum_probs=26.7

Q ss_pred             EEEEecchHHHHHHHHHHhCCCeEEEEeCC
Q 011136          384 FVVIGAGGAGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g~~i~v~~R~  413 (493)
                      |+|||+|.||..+|.++++.|+++.++..+
T Consensus         5 VIVIGgG~AG~eAA~~aAR~G~ktllit~~   34 (230)
T d2cula1           5 VLIVGAGFSGAETAFWLAQKGVRVGLLTQS   34 (230)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEEec
Confidence            899999999999999999999977777554

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.37  E-value=0.29  Score=49.84  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=30.8

Q ss_pred             cCCCEEEEEecchHHHHHHHHHHhCCC-eEEEEeC
Q 011136          379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR  412 (493)
Q Consensus       379 l~~~~vlvlGaGGaara~~~~L~~~g~-~i~v~~R  412 (493)
                      +++.+|+|+|+||.|.-++..|+..|+ +++|++.
T Consensus        23 L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~   57 (529)
T d1yova1          23 LESAHVCLINATATGTEILKNLVLPGIGSFTIIDG   57 (529)
T ss_dssp             HHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcC
Confidence            456799999999999999999999999 9999864

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=82.03  E-value=6.5  Score=34.60  Aligned_cols=121  Identities=16%  Similarity=0.133  Sum_probs=74.1

Q ss_pred             CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 011136           23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVD  102 (493)
Q Consensus        23 ~~~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~  102 (493)
                      .|.|. -++..+.++...-++.+.+.|..++|+.++-   -...+.++.++++.+- +++-.-|     .  .+.+    
T Consensus        15 ~~iip-vlr~~~~~~a~~~~~al~~~Gi~~iEitl~t---p~a~~~I~~l~~~~p~-~~vGaGT-----V--~~~~----   78 (213)
T d1wbha1          15 GPVVP-VIVVKKLEHAVPMAKALVAGGVRVLNVTLRT---ECAVDAIRAIAKEVPE-AIVGAGT-----V--LNPQ----   78 (213)
T ss_dssp             CSEEE-EECCSSGGGHHHHHHHHHHTTCCEEEEESCS---TTHHHHHHHHHHHCTT-SEEEEES-----C--CSHH----
T ss_pred             CCEEE-EEECCCHHHHHHHHHHHHHCCCCEEEEeCCC---hhHHHHHHHHHHHCCC-Ceeeccc-----c--ccHH----
Confidence            34443 5888999999999999999999999998853   1224567777665432 3332221     1  1222    


Q ss_pred             HHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 011136          103 VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA  173 (493)
Q Consensus       103 ll~~~l~~~~dyIDIEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~el~~~~~~~~~~gaDIvKia  173 (493)
                      -++.+.+.|++|+ |-=..++++++.-.   +.+.-.|=-.    .||+      -+.++.++||+++|+-
T Consensus        79 ~~~~a~~aGa~Fi-vSP~~~~~v~~~a~---~~~i~~iPGv----~Tps------Ei~~A~~~G~~~vKlF  135 (213)
T d1wbha1          79 QLAEVTEAGAQFA-ISPGLTEPLLKAAT---EGTIPLIPGI----STVS------ELMLGMDYGLKEFKFF  135 (213)
T ss_dssp             HHHHHHHHTCSCE-EESSCCHHHHHHHH---HSSSCEEEEE----SSHH------HHHHHHHTTCCEEEET
T ss_pred             HHHHHHHCCCcEE-ECCCCCHHHHHHHH---hcCCCccCCc----CCHH------HHHHHHHCCCCEEEec
Confidence            3456788899887 33334444444332   2344444432    2554      3445778999999984

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.82  E-value=0.95  Score=37.87  Aligned_cols=43  Identities=23%  Similarity=0.221  Sum_probs=30.1

Q ss_pred             CEEEEEec-chHHHHHHHHHHhCCC-------eEEEEeCC--hHHHHHHHHHh
Q 011136          382 KLFVVIGA-GGAGKALAYGAKAKGA-------RVVIANRT--YGESLTFLRLM  424 (493)
Q Consensus       382 ~~vlvlGa-GGaara~~~~L~~~g~-------~i~v~~R~--~~~a~~la~~~  424 (493)
                      -||.|+|| |..|.++++.|+..+.       .+++++.+  .++++.++.++
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~   56 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMEL   56 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHH
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhh
Confidence            48999996 9999999999986431       56776654  45555555443

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.70  E-value=0.63  Score=40.57  Aligned_cols=30  Identities=37%  Similarity=0.515  Sum_probs=27.0

Q ss_pred             EEEEecchHHHHHHHHHHhCCC-eEEEEeCC
Q 011136          384 FVVIGAGGAGKALAYGAKAKGA-RVVIANRT  413 (493)
Q Consensus       384 vlvlGaGGaara~~~~L~~~g~-~i~v~~R~  413 (493)
                      ++|||+|.+|.+++..++++|. +|.|..+.
T Consensus         6 viIIG~GpaGl~aA~~aa~~g~k~V~iie~~   36 (238)
T d1aoga1           6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ   36 (238)
T ss_dssp             EEEECCSHHHHHHHHHHHHTSCCCEEEEESC
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEee
Confidence            8999999999999999999987 78888763

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.50  E-value=1.3  Score=37.27  Aligned_cols=77  Identities=10%  Similarity=-0.031  Sum_probs=43.1

Q ss_pred             EEEEEecchHHHHHHHH--HHh---CCC-eEEEEeCChHHHHHHHHHhhhhhhcccccceEEEEeecccccCCceEEEEe
Q 011136          383 LFVVIGAGGAGKALAYG--AKA---KGA-RVVIANRTYGESLTFLRLMSWLLLNTLLFDSVIVIRILLFTWHLKFFIAAN  456 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~--L~~---~g~-~i~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~i~~n  456 (493)
                      |+.|||||..+.+.++.  +..   ... +|.++++++++++...+ +......  ....+.+-.+.++.. .+.++++.
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d-~~~~~~~--~~~~~~~t~~~~~~l-~~aDvVVi   77 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD-FVKRLVK--DRFKVLISDTFEGAV-VDAKYVIF   77 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH-HHHHHHT--TSSEEEECSSHHHHH-TTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHH-HHHhhhc--cCceEEEecCccccc-CCCCEEEE
Confidence            68999999655544433  222   223 89999999999875443 3222211  111233323333333 56677887


Q ss_pred             ccccCCc
Q 011136          457 IIHLGNH  463 (493)
Q Consensus       457 ~tplG~~  463 (493)
                      +...|-.
T Consensus        78 ta~~~~~   84 (162)
T d1up7a1          78 QFRPGGL   84 (162)
T ss_dssp             CCCTTHH
T ss_pred             ecccCCC
Confidence            7665533

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.32  E-value=0.94  Score=34.81  Aligned_cols=32  Identities=19%  Similarity=0.335  Sum_probs=27.9

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      ||||||+||=--|++..|.+...+|+++-=|.
T Consensus         2 kVLviGsGgREHAia~~l~~s~~~v~~~pGN~   33 (90)
T d1vkza2           2 RVHILGSGGREHAIGWAFAKQGYEVHFYPGNA   33 (90)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCeEEEecCCc
Confidence            79999999999999999998877999875443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=81.19  E-value=0.53  Score=35.30  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCCeEEEEeCChH
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYG  415 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~~  415 (493)
                      |+|.|||+|--||-.+.+...+|+++.+++-+.+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            5899999999999999999999999999997643

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.95  E-value=1.4  Score=37.87  Aligned_cols=37  Identities=30%  Similarity=0.336  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEecch-HHHHHHHHHHhCCCeEEEEeCC
Q 011136          377 SALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRT  413 (493)
Q Consensus       377 ~~l~~~~vlvlGaGG-aara~~~~L~~~g~~i~v~~R~  413 (493)
                      .+++||+++|||-+. .|+-++.-|.+.|+.+++++++
T Consensus        25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            478999999999887 7999999999999999988764

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=80.88  E-value=8.7  Score=32.98  Aligned_cols=97  Identities=15%  Similarity=0.171  Sum_probs=68.3

Q ss_pred             EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 011136           25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL  104 (493)
Q Consensus        25 ~Icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  104 (493)
                      +|||.|-..|+++++.-++++ ...+|++|+=.+++...- .+.++.+++..+.|+++-+..      ++.+...+ ...
T Consensus         1 ll~vALD~~~~~~a~~~~~~l-~~~v~~iKvG~~l~~~~G-~~~i~~l~~~~~~~if~DlK~------~Di~~t~~-~~~   71 (206)
T d2czda1           1 MIVLALDVYEGERAIKIAKSV-KDYISMIKVNWPLILGSG-VDIIRRLKEETGVEIIADLKL------ADIPNTNR-LIA   71 (206)
T ss_dssp             CEEEECCCCSHHHHHHHHHHH-GGGCSEEEEEHHHHHHHC-TTHHHHHHHHHCCEEEEEEEE------CSCHHHHH-HHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHh-CCcccEEEECHHHHhhcC-HHHHHHHHHhcCCeEEEEeee------eeecccch-hee
Confidence            589999999999999999876 456999999998874321 135777776568899988775      22322222 334


Q ss_pred             HHHHHhCCcEEEEEcccccchhHHHh
Q 011136          105 RLAMELGADYIDVELQVAREFNDSIR  130 (493)
Q Consensus       105 ~~~l~~~~dyIDIEl~~~~~~~~~l~  130 (493)
                      +.+.+.|+|++.|=-....+-++...
T Consensus        72 ~~~~~~gad~~Tvh~~~g~~~i~~~~   97 (206)
T d2czda1          72 RKVFGAGADYVIVHTFVGRDSVMAVK   97 (206)
T ss_dssp             HHHHHTTCSEEEEESTTCHHHHHHHH
T ss_pred             hhhccccccEEEeeecccHHHHHHhh
Confidence            56677899999997766666555443

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.70  E-value=0.67  Score=41.06  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=26.6

Q ss_pred             CEEEEEecchHHHHHHHHHHhCCC---eEEEEeCC
Q 011136          382 KLFVVIGAGGAGKALAYGAKAKGA---RVVIANRT  413 (493)
Q Consensus       382 ~~vlvlGaGGaara~~~~L~~~g~---~i~v~~R~  413 (493)
                      .+++|||+|.+|.+++.+++++|.   +|.++++.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            379999999999998888777663   78998875

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=80.37  E-value=4.5  Score=38.01  Aligned_cols=92  Identities=23%  Similarity=0.270  Sum_probs=57.0

Q ss_pred             EeecCCCHHHHHHHH----HhhhhcCCCEEEEEec--CCC--------CC---------Cc-----hhHHHHHHhhCCCc
Q 011136           28 VPIMGESVDKMVVDM----GKANASGADLVEIRLD--GLK--------NF---------NP-----RENIKTLIKESPVP   79 (493)
Q Consensus        28 v~l~~~~~~e~~~~~----~~~~~~~aD~vElRlD--~l~--------~~---------~~-----~~~l~~l~~~~~~P   79 (493)
                      ..++...++++..+.    +++.++|.|.||+-.=  ||-        +.         ++     .+.++.+|+....|
T Consensus       131 ~~lt~~eI~~ii~~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~  210 (337)
T d1z41a1         131 VEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGP  210 (337)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhccc
Confidence            346666666665553    3446789999999652  221        11         01     13455666667889


Q ss_pred             EEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcc
Q 011136           80 TLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQ  120 (493)
Q Consensus        80 iI~T~R~~~eGG~~~~~~~~~~~ll~~~l~~~~dyIDIEl~  120 (493)
                      +++-++.. +.-....+.++..++.+...+.|+|++++-..
T Consensus       211 ~~vr~~~~-~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g  250 (337)
T d1z41a1         211 LFVRVSAS-DYTDKGLDIADHIGFAKWMKEQGVDLIDCSSG  250 (337)
T ss_dssp             EEEEEECC-CCSTTSCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ceEEeccc-ccccCccchhhhHHHHHHHHHcCCcccccccc
Confidence            88766543 11111235677888888888899999988543

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=80.13  E-value=0.76  Score=41.40  Aligned_cols=32  Identities=31%  Similarity=0.356  Sum_probs=29.1

Q ss_pred             EEEEEecchHHHHHHHHHHhCCCeEEEEeCCh
Q 011136          383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTY  414 (493)
Q Consensus       383 ~vlvlGaGGaara~~~~L~~~g~~i~v~~R~~  414 (493)
                      .++|||+|.+|..++..++++|.+++++.+..
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            49999999999999999999999999988753