Citrus Sinensis ID: 011147

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--
Protein Sequence
MAANDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDVHRKIKINMLESQKSPSPGAAFVSRLRRTPMDSPIPSHHDQTPVSSYNHSPIIHSPALPYIQSPFIRPTLSASPGKSLPTSLATLTETTGHSPPAHRVT
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccccccEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEEEHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHEEccccHHHHHHHHHHHHHHHcccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHccccccEEcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHcccHHcEEEEccccHccHHHHHHHHHccccEEEEEccccccEEHHEEEHHHEEcccccccccccccccccccccccccHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccccccccccHHHHcccccEEEEcccccccccccccEEEEEEHHHHHHHHHHHHHHccccEEEEccccEEEccccccccccHcccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
maandvpccepmFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMragqpqdrknaEKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSryglsvgaKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMhgneagkggelthdeTTIITGALDMTQKTAKDAMTAMSKIFSLDinsrldektmgliisnghsrvpiyvgtptniIGAILGHSHMAVVVKCKNDSKEIAEMekskapmqhdiniNSNLKQRQGElkgnvqneqfnaymnspsvissdidiqssmAKSADLHLCLKKWERQDVKISKEeleslpsvdeeVIGIITLEDVMEELLQEEILDETDDYVDVHRKIKINmlesqkspspgaafvsrlrrtpmdspipshhdqtpvssynhspiihspalpyiqspfirptlsaspgkslptslatltettghsppahrvt
Flexible Loop (DISEMBL)
maandvpcCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGneagkggelthdETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMekskapmqhdiNINSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKiskeeleslpsvdeevIGIITLEDVMEELLQEEILDETDDYVDVHRKIKinmlesqkspspgaAFVSRLRRTPMDSPIPSHHDQTPVSSYNHSPIIHSPALPYIQSPFIRPTLSASPGKSLPTSLAtltettghsppahrvt
Low Complexity Region (SEG)
MAANDVPCCEPMFWVYLVICVGLVSFAglmsgltlglmslslVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKlsvlvrlivivlFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNspsvissdidiqssMAKSADLHLCLKKWERQDVKISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDVHRKIKINMLESQKSPSPGAAFVSRLRRTPMDSPIPSHHDQTPVSSYNHSPIIHSPALPYIQSPFIRPTLSASPGKSLPTSLATLTETTGHSPPAHRVT
Disordered region (IsUnstruct)
*****VPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAG*******AEKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHG********LTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCK*****************************************************************ADLHLCLKKWERQDVKI********PSVDEEVIGIITLEDVMEELLQEEILDETDDYVDVHRKIKIN*************************************************LPYIQ*************************************
Disordered Region (DISOPRED)
******P*CEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLE**************EKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRH*****RAELKTLVDM*************DETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSS**************************ESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDV**************************************************************************************************
Disordered Region (DISEMBL)
MAANDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDVHRKIKINMLESQKSPSPGAAFVSRLRRTPMDSPIPSHHDQTPVSSYNHSPIIHSPALPYIQSPFIRPTLSASPGKSLPTSLATL**************
Disordered Region (DISPRO)
****DVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFN*************************HL*LK*WERQDVKISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDVHRKIKINM******PS*********RRTPMDSPIPSHHDQTPVSSYNHSPIIHSPA*P*IQSPFIR*T******************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAANDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDVHRKIKINMLESQKSPSPGAAFVSRLRRTPMDSPIPSHHDQTPVSSYNHSPIIHSPALPYIQSPFIRPTLSASPGKSLPTSLATLTETTGHSPPAHRVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	492	2.2.26 [Sep-21-2011]
Q9LTD8	500	DUF21 domain-containing p	yes	no	0.941	0.926	0.585	1e-144
Q8RY60	527	DUF21 domain-containing p	no	no	0.920	0.859	0.459	1e-120
Q8VZI2	424	DUF21 domain-containing p	no	no	0.756	0.877	0.493	1e-106
Q9ZQR4	423	DUF21 domain-containing p	no	no	0.762	0.886	0.483	1e-105
Q4V3C7	495	DUF21 domain-containing p	no	no	0.808	0.804	0.423	1e-95
Q67XQ0	494	DUF21 domain-containing p	no	no	0.774	0.771	0.475	8e-95
Q9ZVS8	499	Putative DUF21 domain-con	no	no	0.798	0.787	0.453	4e-92
Q9USJ3	679	Uncharacterized protein C	yes	no	0.493	0.357	0.403	1e-48
Q12296	706	Protein MAM3 OS=Saccharom	yes	no	0.489	0.341	0.398	2e-47
Q9H8M5	875	Metal transporter CNNM2 O	yes	no	0.715	0.402	0.310	4e-47

>sp|Q9LTD8|Y5279_ARATH DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2

 Score =  513 bits (1321), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 283/483 (58%), Positives = 341/483 (70%), Gaps = 20/483 (4%)

Query: 1   MAANDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNA 60
           MAANDVPCCE MFWVYL++CV LV FAGLMSGLTLGLMSLS+V+LEV+++AG+P DRKNA
Sbjct: 1   MAANDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNA 60

Query: 61  EKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAV 120
           EKILP+VKNQHLLLCTLLIGNA+AMEALPIF+D+LLPAW +I+ISVTLILAFGEIIPQAV
Sbjct: 61  EKILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAV 120

Query: 121 CSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGN 180
           CSRYGLS+GAKLS LVRLI+IV FP++YPISKLLD LLGKRHS LL RAELK+LV MHGN
Sbjct: 121 CSRYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGN 180

Query: 181 EAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHS 240
           EAGKGGELTHDETTII+GALDM+QK+AKDAMT +S+IFSLDIN +LDEKTMGLI S GHS
Sbjct: 181 EAGKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHS 240

Query: 241 RVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKE--IAEMEKS--KAPMQHDININSNLK 296
           R+PIY   P  IIG IL  + + V  + +   ++  I  M K     P+   +NI    +
Sbjct: 241 RIPIYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGR 300

Query: 297 QRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISK--E 354
                + G   +   N  ++  S       I  S  K A++ L +      +        
Sbjct: 301 SHMAAVVGTKNHTNTNTPVHEKS-------INGSPNKDANVFLSIPALNSSETSHQSPIR 353

Query: 355 ELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDVHRKIKINMLESQKSPSPGAA 414
            ++S+   DEEVIGIITLEDVMEEL+QEEI DETD YV++H++I INM  S  SP   A 
Sbjct: 354 YIDSISDEDEEVIGIITLEDVMEELIQEEIYDETDQYVELHKRITINMPMSGNSPE-TAT 412

Query: 415 FVSRLRRTPMDSPIPSHHDQTPVSSYNHSPIIHSP-ALPYIQSPFIRPTLSASPGKSLPT 473
           + S L      SPI  +       S   S ++ SP   PY  S  +RPTL ASP    P+
Sbjct: 413 WASELA-----SPISPYRSSLLSPSIMISTLLRSPINSPYRHSLLLRPTLHASPPAQSPS 467

Query: 474 SLA 476
            L+
Sbjct: 468 ILS 470

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RY60|Y1733_ARATH DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1

 Score =  431 bits (1108), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/522 (45%), Positives = 328/522 (62%), Gaps = 69/522 (13%)

Query: 3   ANDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEK 62
           ++D+PCC   F +Y+VI + LV+FAGLM+GLTLGLMSL LVDLEVL+++G+PQDR NA K
Sbjct: 2   SSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGK 61

Query: 63  ILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCS 122
           I P+VKNQHLLLCTLLIGN+MAMEALPIFLD ++P W +I++SVTLIL FGEI+PQAVC+
Sbjct: 62  IFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCT 121

Query: 123 RYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEA 182
           RYGL VGA ++  VR+++++ FPI+YPISK+LDW+LGK H  LLRRAELKT V+ HGNEA
Sbjct: 122 RYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEA 181

Query: 183 GKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRV 242
           GKGG+LT DET+IITGAL++T+KTAKDAMT +S  FSL++++ L+ +T+  I+S GHSRV
Sbjct: 182 GKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRV 241

Query: 243 PIYVGTPTNIIGAIL-----------------------------------------GHSH 261
           P+Y   PT+IIG IL                                         GHSH
Sbjct: 242 PVYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSH 301

Query: 262 MAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVI 321
           +AVV       K++ E E+S    ++ I    N K +    K + +  +    ++   V 
Sbjct: 302 IAVVY------KDLDEQEQSPETSENGIERRKNKKTKDELFKDSCRKPKAQFEVSEKEVF 355

Query: 322 -----------SSDIDIQSSMAKSADLHLCLKKWERQD----VKISKEELESLPSVDEEV 366
                      S + + Q    K++ L    KK  R      + I    +   P+ +EEV
Sbjct: 356 KIETGDAKSGKSENGEEQQGSGKTSLLAAPAKKRHRGCSFCILDIENTPIPDFPT-NEEV 414

Query: 367 IGIITLEDVMEELLQEEILDETDDYVDVHRKIKINMLESQKSPSPGAAFVSRLRRTPMDS 426
           +G+IT+EDV+EELLQEEILDETD+YV++H +I++NM     SP    + ++ + ++   S
Sbjct: 415 VGVITMEDVIEELLQEEILDETDEYVNIHNRIRVNM---HASPENLPSVITSITQSSSGS 471

Query: 427 PIPSH--HDQTPVSSYNHSPIIHSPAL-PYIQSPFIRPTLSA 465
             P+   H  TP SS    P   SP   P + SP   P+ S+
Sbjct: 472 TSPNQTSHMATPDSSPTTKPSNSSPTRKPSVSSPTREPSDSS 513

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZI2|Y4370_ARATH DUF21 domain-containing protein At4g33700 OS=Arabidopsis thaliana GN=CBSDUF6 PE=1 SV=1

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/430 (49%), Positives = 272/430 (63%), Gaps = 58/430 (13%)

Query: 8   CCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIV 67
           CC P F++++ + V LV FAGLMSGLTLGLMSLSLVDLEVL ++G P+ RK A KILP+V
Sbjct: 7   CCSPNFFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAAKILPVV 66

Query: 68  KNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLS 127
           KNQHLLL TLLI NA AME LPIFLD L+ AW +I+ISVTLIL FGEIIPQ++CSRYGL+
Sbjct: 67  KNQHLLLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSICSRYGLA 126

Query: 128 VGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGE 187
           +GA ++  VR++V +  P+A+PISKLLD+LLG R +AL RRAELKTLVD HGNEAGKGGE
Sbjct: 127 IGATVAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNEAGKGGE 186

Query: 188 LTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVG 247
           LTHDETTII GAL++++K  KDAMT +S IF +DIN++LD   M LI+  GHSRVP+Y  
Sbjct: 187 LTHDETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPVYYE 246

Query: 248 TPTNIIGAIL-----------------------------------------GHSHMAVVV 266
            PTNIIG +L                                         G SHMAVVV
Sbjct: 247 QPTNIIGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMAVVV 306

Query: 267 KCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDID 326
           +  +    +     S    + D++       ++  L+     +++ ++ N  S       
Sbjct: 307 RQCDKIHPLPSKNGSVKEARVDVDSEGTPTPQERMLRTKRSLQKWKSFPNRASSFKGG-- 364

Query: 327 IQSSMAKSADLHLCLKKWER-QDVKISKEELESLPSV--DEEVIGIITLEDVMEELLQEE 383
                +KS       KKW +  D  I +     LP +  +EE +GIIT+EDV+EELLQEE
Sbjct: 365 -----SKS-------KKWSKDNDADILQLNGNPLPKLAEEEEAVGIITMEDVIEELLQEE 412

Query: 384 ILDETDDYVD 393
           I DETD + +
Sbjct: 413 IFDETDHHFE 422

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQR4|Y2452_ARATH DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2

 Score =  382 bits (981), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/436 (48%), Positives = 280/436 (64%), Gaps = 61/436 (13%)

Query: 3   ANDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEK 62
           A +  CC   F++++ + V LV FAGLMSGLTLGLMS+SLVDLEVL ++G P+DR +A K
Sbjct: 2   AVEYECCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAK 61

Query: 63  ILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCS 122
           ILP+VKNQHLLLCTLLI NA AMEALPIFLDAL+ AW +I+ISVTLIL FGEIIPQ+VCS
Sbjct: 62  ILPVVKNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCS 121

Query: 123 RYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEA 182
           R+GL++GA ++  VR++V +  P+A+PISKLLD+LLG    AL RRAELKTLVD+HGNEA
Sbjct: 122 RHGLAIGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEA 181

Query: 183 GKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRV 242
           GKGGELTHDETTII GAL++++K AKDAMT +S  F +DIN++LD   M LI+  GHSRV
Sbjct: 182 GKGGELTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRV 241

Query: 243 PIYVGTPTNIIGAIL-----------------------------------------GHSH 261
           P+Y    TNIIG +L                                         GHSH
Sbjct: 242 PVYYEQRTNIIGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSH 301

Query: 262 MAVVVKCKNDSKEIAEMEKSKAPMQH-DININSNLKQRQGELKGNVQNEQFNAYMNSPSV 320
           MAVVV+  +    +   + +   +    ++++     ++ +LK     +++ ++ N  + 
Sbjct: 302 MAVVVRQCDKIHPLQSNDAANETVNEVRVDVDYERSPQETKLKRRRSLQKWKSFPNRANS 361

Query: 321 ISSDIDIQSSMAKSADLHLCLKKWER-QDVKISKEELESLPSVDEE--VIGIITLEDVME 377
           + S         +S       K+W +  D  I +     LP +DEE   +GIIT+EDV+E
Sbjct: 362 LGS---------RS-------KRWSKDNDADILQLNEHPLPKLDEEEDAVGIITMEDVIE 405

Query: 378 ELLQEEILDETDDYVD 393
           ELLQEEI DETD + +
Sbjct: 406 ELLQEEIFDETDHHFE 421

Arabidopsis thaliana (taxid: 3702)

>sp|Q4V3C7|Y4423_ARATH DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1

 Score =  350 bits (899), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 203/479 (42%), Positives = 286/479 (59%), Gaps = 81/479 (16%)

Query: 14  WV-YLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHL 72
           W+ Y  I   LV FAG+MSGLTLGLMSL LV+LE+L R+G P+++K +  I P+V+ QH 
Sbjct: 34  WITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPKEKKQSAAIFPVVQKQHQ 93

Query: 73  LLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKL 132
           LL TLL+ NA+AME LPI+LD +   + +I++SVT +L  GE+IPQA+C+RYGL+VGA L
Sbjct: 94  LLVTLLLFNALAMEGLPIYLDKIFNEYVAIILSVTFVLFVGEVIPQAICTRYGLAVGANL 153

Query: 133 SVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHDE 192
             LVR+++++ +PI++PI+K+LDW+LG  +  L RRA+LK LV +HG  AGKGGELTHDE
Sbjct: 154 VWLVRILMVLSYPISFPIAKMLDWVLG-HNDPLFRRAQLKALVSIHGEAAGKGGELTHDE 212

Query: 193 TTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNI 252
           TTII+GALD+T+KTA++AMT +   FSLD+NS+LD + M  I + GHSRVP+Y   P N+
Sbjct: 213 TTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDREAMDKIQARGHSRVPVYSDNPKNV 272

Query: 253 IGAIL-----------------------------------------GHSHMAVVVKCKND 271
           IG +L                                         G SHMA VVK K  
Sbjct: 273 IGLLLVKSLLTVRPETGTLVSAVGIRRIPRVPANMPLYDILNEFQKGSSHMAAVVKVKGK 332

Query: 272 SKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSM 331
           SK             H   ++   ++  GE   NV +   N+ + +P ++  + +  S +
Sbjct: 333 SK------------GHPSTLH---EENSGE--SNVSSN--NSELTAPLLLKREGNHDSVI 373

Query: 332 AK--SADLHLCLKKWERQDVKISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETD 389
            +   A+    + +  RQ    + EE+E     D +VIGIITLEDV EELLQEEI+DETD
Sbjct: 374 VRIDKANGQSFISEAGRQGFSHTSEEIE-----DGDVIGIITLEDVFEELLQEEIVDETD 428

Query: 390 DYVDVHRKIKINMLESQKSPSPGAAFVSRLRRTP----MDSPIPSHHDQTPVSSYNHSP 444
           +Y+DVH++I++  +         A  +S L R P    +  P  S   +TP +S    P
Sbjct: 429 EYIDVHKRIRVATV--------AAVAISSLARAPSGRRLLGPKGSGGPKTPKASSTPKP 479

Arabidopsis thaliana (taxid: 3702)

>sp|Q67XQ0|Y4424_ARATH DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=2 SV=1

 Score =  347 bits (891), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 195/410 (47%), Positives = 264/410 (64%), Gaps = 29/410 (7%)

Query: 14  WV-YLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHL 72
           W+ Y  I   LV FAG+MSGLTLGLMSL LV+LE+L R+G P ++K A  I P+V+ QH 
Sbjct: 35  WITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPNEKKQAAAIFPVVQKQHQ 94

Query: 73  LLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKL 132
           LL TLL+ NAMAME LPI+LD L   + +I++SVT +LAFGE+IPQA+C+RYGL+VGA  
Sbjct: 95  LLVTLLLCNAMAMEGLPIYLDKLFNEYVAIILSVTFVLAFGEVIPQAICTRYGLAVGANF 154

Query: 133 SVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHDE 192
             LVR+++ + +PIA+PI K+LD +LG  + AL RRA+LK LV +H  EAGKGGELTHDE
Sbjct: 155 VWLVRILMTLCYPIAFPIGKILDLVLG-HNDALFRRAQLKALVSIHSQEAGKGGELTHDE 213

Query: 193 TTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNI 252
           TTII+GALD+T+KTA++AMT +   FSLD+NS+LD + MG I++ GHSRVP+Y G P N+
Sbjct: 214 TTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNV 273

Query: 253 IGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQ-GELKGNVQNEQF 311
           IG +L  S + V  + +     +      + P   D+ +   L + Q G        +  
Sbjct: 274 IGLLLVKSLLTVRPETETLVSAVCIRRIPRVPA--DMPLYDILNEFQKGSSHMAAVVKVK 331

Query: 312 NAYMNSPSVISSDIDIQSSMAKSADLH--LCLKKWERQD---VKISKEELESLPSVDE-- 364
                 PS +   ++  +  +  +DL   L LK+    D   V I K   +S    +E  
Sbjct: 332 GKSKVPPSTL---LEEHTDESNDSDLTAPLLLKREGNHDNVIVTIDKANGQSFFQNNESG 388

Query: 365 --------------EVIGIITLEDVMEELLQEEILDETDDYVDVHRKIKI 400
                         EVIGIITLEDV EELLQEEI+DETD+YVDVH++I++
Sbjct: 389 PHGFSHTSEAIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRV 438

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVS8|Y1327_ARATH Putative DUF21 domain-containing protein At1g03270 OS=Arabidopsis thaliana GN=CBSDUF4 PE=4 SV=2

 Score =  338 bits (868), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 190/419 (45%), Positives = 268/419 (63%), Gaps = 26/419 (6%)

Query: 3   ANDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEK 62
           A D+    P ++V + +   LV FAG+MSGLTLGLMSL LV+LE+L ++G   ++K A  
Sbjct: 23  AEDIRFGSPWWFVVVGVACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAA 82

Query: 63  ILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCS 122
           ILP+VK QH LL TLL+ NA AMEALPI LD +   + ++++SVT +LAFGEIIPQA+CS
Sbjct: 83  ILPVVKKQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICS 142

Query: 123 RYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEA 182
           RYGL+VGA    LVR+++I+ +PIAYPI K+LD ++G  +  L RRA+LK LV +H  EA
Sbjct: 143 RYGLAVGANFLWLVRILMIICYPIAYPIGKVLDAVIG-HNDTLFRRAQLKALVSIHSQEA 201

Query: 183 GKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRV 242
           GKGGELTH+ET II+GALD++QKTA++AMT +   FSLD+N++LD +T+G I+S GHSR+
Sbjct: 202 GKGGELTHEETMIISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRI 261

Query: 243 PIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGEL 302
           P+Y+G P NIIG +L  S + V  + +     ++  +  + P    +    N  Q+    
Sbjct: 262 PVYLGNPKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIPRVPSDMPLYDILNEFQKGSSH 321

Query: 303 KGNVQNEQFNAYMNSPSVISSDIDIQSSMA--KSADLHLCLKKWERQDVKISKEEL---- 356
              V   +     N+  ++S+    + +M   +S++L   L K E  DV +  +++    
Sbjct: 322 MAAVVKVKDKDKKNNMQLLSNGETPKENMKFYQSSNLTAPLLKHESHDVVVDIDKVPKHV 381

Query: 357 --------------ESLPSV-----DEEVIGIITLEDVMEELLQEEILDETDDYVDVHR 396
                           LP +     D EVIGIITLEDV EELLQ EI+DETD Y+DVH+
Sbjct: 382 KNRGRNFQQNGTVTRDLPCLLEDNEDAEVIGIITLEDVFEELLQAEIVDETDVYIDVHK 440

Arabidopsis thaliana (taxid: 3702)

>sp|Q9USJ3|YJ23_SCHPO Uncharacterized protein C4B3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.03c PE=1 SV=1

 Score =  194 bits (493), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/248 (40%), Positives = 161/248 (64%), Gaps = 5/248 (2%)

Query: 13  FWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVK-NQH 71
           +W+ L+I   L+   G+ +GLT+GLM    + L+VL ++G   +R +A K+L +++  +H
Sbjct: 62  YWMKLIISAVLILLGGVFAGLTIGLMGCDDLHLQVLEQSGDASERVHARKVLKLLRRGKH 121

Query: 72  LLLCTLLIGNAMAMEALPIFLDALLPA-WASIVISVTLILAFGEIIPQAVCSRYGLSVGA 130
            +L TLL+GN +  E LPI  D+++   W +++IS  +I+ FGE+IPQA C RYGLS+GA
Sbjct: 122 WVLVTLLLGNVIVNETLPIVFDSIIGGGWPAVLISTAMIVIFGEVIPQATCVRYGLSIGA 181

Query: 131 KLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTH 190
           KL  +V  ++ +L+PIAYP + +LD  LG+  S + +++ LKTLV +H +      +L  
Sbjct: 182 KLEPIVLFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLKTLVTLHRDLGID--KLNQ 239

Query: 191 DETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYV-GTP 249
           DE TIIT  LD+ +K A+  MT +  +F+L ++  LDE  +G II  G+SR+P++  G P
Sbjct: 240 DEVTIITAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIGEIICAGYSRIPVHKPGFP 299

Query: 250 TNIIGAIL 257
            + IG +L
Sbjct: 300 HDFIGMLL 307

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM3 PE=1 SV=1

 Score =  190 bits (483), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/246 (39%), Positives = 157/246 (63%), Gaps = 5/246 (2%)

Query: 15  VYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIV-KNQHLL 73
            Y +I + LV   G+ +GLTLGLM    V L+V+  +G   ++K A+++L ++ + +H +
Sbjct: 63  TYYIISIILVLLGGVFAGLTLGLMGQDEVYLKVISTSGSNSEKKLAKRVLDLISRGKHWV 122

Query: 74  LCTLLIGNAMAMEALPIFLDALLPA-WASIVISVTLILAFGEIIPQAVCSRYGLSVGAKL 132
           L TLL+ N +  E LPI LD  L   W ++V S  LI+ FGEIIPQ+VC +YGL VGA  
Sbjct: 123 LVTLLLSNVITNETLPIVLDRCLGGGWQAVVSSTILIVIFGEIIPQSVCVKYGLQVGAFF 182

Query: 133 SVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHDE 192
              V +++ +++P+AYPI+ LLD++LG+ H  + +++ LKTLV +H     +   LT DE
Sbjct: 183 CPFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVE--RLTKDE 240

Query: 193 TTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYV-GTPTN 251
            TII+  LD+  K  ++ MT +  +F++  ++ LD+KT+  I ++G SR+PI++   P N
Sbjct: 241 VTIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPNN 300

Query: 252 IIGAIL 257
            IG +L
Sbjct: 301 FIGMLL 306

Involved in metal homeostasis and more specially in manganese sensitivity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9H8M5|CNNM2_HUMAN Metal transporter CNNM2 OS=Homo sapiens GN=CNNM2 PE=1 SV=2

 Score =  189 bits (481), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 124/399 (31%), Positives = 206/399 (51%), Gaps = 47/399 (11%)

Query: 13  FWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHL 72
           FW+ ++    L+  +G+ SGL LGLM+L  ++L ++   G  +++  A++I P+ +  + 
Sbjct: 255 FWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKNYAKRIEPVRRQGNY 314

Query: 73  LLCTLLIGNAMAMEALPIFLDALL-PAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAK 131
           LLC+LL+GN +    L I LD +      ++V+S   I+ FGEI+PQA+CSR+GL+VGA 
Sbjct: 315 LLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVPQAICSRHGLAVGAN 374

Query: 132 LSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHD 191
              L +  +++ FP +YP+SKLLD +LG+    +  R +L  ++ +         +L  +
Sbjct: 375 TIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV----TDPYNDLVKE 430

Query: 192 ETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTN 251
           E  II GAL++  KT +D MT +   F +   + LD  TM  I+ +G++R+P++ G  +N
Sbjct: 431 ELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSN 490

Query: 252 IIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQF 311
           I+  +L    +A V     D  +   ++       H ++   N      + K +   E+F
Sbjct: 491 IVD-LLFVKDLAFV-----DPDDCTPLKTITKFYNHPLHFVFN------DTKLDAMLEEF 538

Query: 312 NAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVDEEVIGIIT 371
                                K    HL +       V+    E E  P    EV+GI+T
Sbjct: 539 ---------------------KKGKSHLAI-------VQRVNNEGEGDPFY--EVLGIVT 568

Query: 372 LEDVMEELLQEEILDETDDYVDVHRKIKINMLESQKSPS 410
           LEDV+EE+++ EILDETD Y D   K K+   E ++  S
Sbjct: 569 LEDVIEEIIKSEILDETDLYTDNRTKKKVAHRERKQDFS 607

Divalent metal cation transporter. Mediates transport of divalent metal cations in an order of Mg(2+) > Co(2+) > Mn(2+) > Sr(2+) > Ba(2+) > Cu(2+) > Fe(2+).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
225464607	540	PREDICTED: DUF21 domain-containing prote	0.973	0.887	0.626	1e-169
224135287	446	predicted protein [Populus trichocarpa]	0.815	0.899	0.618	1e-164
255545164	510	conserved hypothetical protein [Ricinus	0.975	0.941	0.633	1e-163
449446139	490	PREDICTED: DUF21 domain-containing prote	0.908	0.912	0.570	1e-151
195614100	520	hemolysin [Zea mays] gi|413957100|gb|AFW	0.914	0.865	0.548	1e-144
8953734	519	unnamed protein product [Arabidopsis tha	0.941	0.892	0.585	1e-143
42568492	500	CBS domain-containing protein with a dom	0.941	0.926	0.585	1e-143
218192002	518	hypothetical protein OsI_09806 [Oryza sa	0.918	0.872	0.551	1e-142
115450439	518	Os03g0125800 [Oryza sativa Japonica Grou	0.918	0.872	0.546	1e-141
297796089	499	hypothetical protein ARALYDRAFT_495342 [	0.930	0.917	0.575	1e-140

>gi|225464607|ref|XP_002273611.1| PREDICTED: DUF21 domain-containing protein At5g52790 [Vitis vinifera] gi|302143780|emb|CBI22641.3| unnamed protein product [Vitis vinifera]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 339/541 (62%), Positives = 391/541 (72%), Gaps = 62/541 (11%)

Query: 1   MAANDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNA 60
           MAA+DVPCCE MFW+YLVICV LVSFAGLMSGLTLGLMSLSLVDLEVL +AG+PQDR+NA
Sbjct: 1   MAASDVPCCETMFWIYLVICVALVSFAGLMSGLTLGLMSLSLVDLEVLAKAGRPQDRRNA 60

Query: 61  EKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAV 120
           EKILPIVKNQHLLLCTLLIGN++AMEALPIFLDAL+PAW +I+ISVTLILAFGEIIPQAV
Sbjct: 61  EKILPIVKNQHLLLCTLLIGNSLAMEALPIFLDALVPAWGAILISVTLILAFGEIIPQAV 120

Query: 121 CSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGN 180
           CS+YGLSVGAKLSV+VRL+V+VLFPI+YPISKLLDWLLGK HSALLRRAELKTLVDMHGN
Sbjct: 121 CSQYGLSVGAKLSVVVRLLVLVLFPISYPISKLLDWLLGKGHSALLRRAELKTLVDMHGN 180

Query: 181 EAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHS 240
           EAG+GGELTHDETTII+G LDMTQKTAKDAMT +S+IFSLDIN+RLDE TM LI++ GHS
Sbjct: 181 EAGRGGELTHDETTIISGVLDMTQKTAKDAMTPISEIFSLDINTRLDEDTMSLILNRGHS 240

Query: 241 RVPIYVGTPTNIIGAIL-----------------------------------------GH 259
           R+P++ G+ TNIIG IL                                         GH
Sbjct: 241 RIPVFSGSLTNIIGLILVKNLIKCRAEDETPIRNLTIRRIPRVYDCLPLYDILNQFQKGH 300

Query: 260 SHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNE-----QFNAY 314
           SHMAVVVKC+ D K   E   +K P    IN NSN +QRQ + KG V N+     Q N  
Sbjct: 301 SHMAVVVKCRKDVKTNTENANTK-PCTFAIN-NSNSRQRQAKNKG-VDNQFCPSVQLNIS 357

Query: 315 MNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVDEEVIGIITLED 374
            N  S  S +  ++  M +       LKKW   D  ++ E+LESLP++DEEVIGIIT+ED
Sbjct: 358 RNVSSE-SKNPTLKKMMEQGKGASPRLKKWGSGDGNVTDEDLESLPNLDEEVIGIITMED 416

Query: 375 VMEELLQEEILDETDDYVDVHRKIKINML--ESQKSPSPGAAFVSRLR-RTPMDSPIPSH 431
           VMEELLQEEILDETD+Y+DVH KIKINML      S SP  A  S L  R+P+ SP+   
Sbjct: 417 VMEELLQEEILDETDEYIDVHNKIKINMLPSRRSSSRSPAVALASHLHWRSPVASPL--- 473

Query: 432 HDQTPVSSYNHSPIIHSPALPYIQSPFIRPTLSASPGKSLPTSLATLTETTGHSPPAHRV 491
                 SS  H+P++ SP  PY+   FIRPTLSASPG S+P S A L      SP  HRV
Sbjct: 474 ------SSCGHTPVLDSPVSPYVYPSFIRPTLSASPGISMPNSPAGLAGPIRSSPSPHRV 527

Query: 492 T 492
           +
Sbjct: 528 S 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135287|ref|XP_002327610.1| predicted protein [Populus trichocarpa] gi|222836164|gb|EEE74585.1| predicted protein [Populus trichocarpa]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 314/508 (61%), Positives = 352/508 (69%), Gaps = 107/508 (21%)

Query: 1   MAANDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNA 60
           MAANDVPCCEPMFW YL+IC+ LVSFAGLMSGLTLGLMSL++VDLEVL++AGQPQ+RKNA
Sbjct: 1   MAANDVPCCEPMFWTYLIICMALVSFAGLMSGLTLGLMSLTVVDLEVLIKAGQPQERKNA 60

Query: 61  EKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAV 120
           EKILPIVKNQHLLLCTLLIGNA+AMEALPIFLDALLPAW +I+ISVTLIL FGEIIPQAV
Sbjct: 61  EKILPIVKNQHLLLCTLLIGNALAMEALPIFLDALLPAWGAILISVTLILTFGEIIPQAV 120

Query: 121 CSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGN 180
           CSRYGLS+GAKLS++VR IVIVLFP+AYPISKLLDW+LG++HSALLRRAELKTLVDMHGN
Sbjct: 121 CSRYGLSIGAKLSIVVRFIVIVLFPLAYPISKLLDWILGEKHSALLRRAELKTLVDMHGN 180

Query: 181 EAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHS 240
           EAGKGGELTHDETTIITGALD+TQKTAKDAMT +S+ FSLDIN +LDEKTMGLII  GHS
Sbjct: 181 EAGKGGELTHDETTIITGALDLTQKTAKDAMTPISETFSLDINCKLDEKTMGLIIRKGHS 240

Query: 241 RVPIYVGTPTNIIGAIL-----------------------------------------GH 259
           RVPIY G PTNIIG IL                                         GH
Sbjct: 241 RVPIYTGNPTNIIGLILVKNLIRCRPEDETPIRDLTIRRIPRVPDLLPLYDIMNQFQKGH 300

Query: 260 SHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPS 319
           SHMAVVVK KND+ E A+               +N K     L   +QN+          
Sbjct: 301 SHMAVVVKSKNDANETAQ--------------KANYKPTIDNLHPKLQNQ---------- 336

Query: 320 VISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVDEEVIGIITLEDVMEEL 379
                                    E Q   +S EELE L + DEEVIG+ITLEDVMEEL
Sbjct: 337 -------------------------EHQHGNLSHEELEFLSASDEEVIGVITLEDVMEEL 371

Query: 380 LQEEILDETDDYVDVHRKIKINMLESQKSPSPGAAFVSRLRRTPMDSPIPSHHDQTPVSS 439
           +QEEILDETD+YVDVH KI INM+  ++SP  G A           SP+  +H Q+PV  
Sbjct: 372 IQEEILDETDEYVDVHNKITINMIPPRRSPGAGTA-----------SPVSPYH-QSPV-- 417

Query: 440 YNHSPIIHSPALPYIQSPFIRPTLSASP 467
              SPI+ SP  PY  SPFIRPTL ASP
Sbjct: 418 ---SPILLSPIPPYAYSPFIRPTLYASP 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545164|ref|XP_002513643.1| conserved hypothetical protein [Ricinus communis] gi|223547551|gb|EEF49046.1| conserved hypothetical protein [Ricinus communis]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 325/513 (63%), Positives = 394/513 (76%), Gaps = 33/513 (6%)

Query: 1   MAANDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNA 60
           MAANDVPCCEPMFW YL+IC+ LV FAGLMSGLTLGLMSLSLVDLEVL++AGQPQ+RK+A
Sbjct: 1   MAANDVPCCEPMFWTYLIICIALVCFAGLMSGLTLGLMSLSLVDLEVLIKAGQPQERKHA 60

Query: 61  EKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAV 120
           EKILPIVKNQHLLLCTLLIGNA+AMEALPIF+DALLPAW +I+ISVTLILAFGEIIPQAV
Sbjct: 61  EKILPIVKNQHLLLCTLLIGNALAMEALPIFVDALLPAWGAILISVTLILAFGEIIPQAV 120

Query: 121 CSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGN 180
           CSRYGLSVGAK+SV+VRLIV+VLFP+AYPISKLLDW+LGK+HSALLRRAELKTLVDM G+
Sbjct: 121 CSRYGLSVGAKMSVVVRLIVVVLFPLAYPISKLLDWILGKKHSALLRRAELKTLVDMLGS 180

Query: 181 EAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHS 240
           EAGKGGELTHDETTIITGALDMTQKTAKDAMT +SK+FSLDINS+LDE+T+GLII+ GHS
Sbjct: 181 EAGKGGELTHDETTIITGALDMTQKTAKDAMTPLSKVFSLDINSKLDEETLGLIINKGHS 240

Query: 241 RVPIYVGTPTNIIGAILGHSHMAVVVKCK-NDSKEIAEMEKSKAP-MQHDININSNLKQR 298
           R+PIY G   NIIG IL    +  ++K +  D   I E+   K P +Q  + +   + Q 
Sbjct: 241 RIPIYSGNLENIIGLIL----VKNLIKFRPEDETPIREITIRKIPRVQDHLPLYDIMNQF 296

Query: 299 Q-------------GELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSAD-LHLCLKKW 344
           Q             G   G  +NE FN  ++ PSV   +    S++   AD LH  L++ 
Sbjct: 297 QIGHSHMAVVVKWNGHQPG--RNEHFNICIHKPSVSEYENPRPSNVTDLADCLHPKLQRS 354

Query: 345 ERQDVKISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDVHRKIKINMLE 404
           E ++  +S E  +   + DEEVIGIITLEDVMEELLQEEILDETD+Y++ H  I INML 
Sbjct: 355 ECENQSLSNE--DECAAFDEEVIGIITLEDVMEELLQEEILDETDEYIEAHTTITINMLP 412

Query: 405 SQKSP---SP-GAAFVSRLR-RTPMDSPIPSHHDQTPVSSYNHSPIIHSPALPYIQSPFI 459
           S++SP   SP  AA  S+++ RTP+ SP+ S+H Q+P+SS N +P++HSP   Y++SP  
Sbjct: 413 SRRSPLIKSPLAAAAASQIQWRTPLASPVSSYH-QSPLSSCNLTPLLHSPIPAYVRSPLA 471

Query: 460 RPTLSASPGKSLPTSLATLTETTGHSPPAHRVT 492
           RPTLSASP KS+P S      T  +SP + +V+
Sbjct: 472 RPTLSASPEKSVPNSPPG---TANYSPSSRQVS 501

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446139|ref|XP_004140829.1| PREDICTED: DUF21 domain-containing protein At5g52790-like [Cucumis sativus]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 304/533 (57%), Positives = 362/533 (67%), Gaps = 86/533 (16%)

Query: 1   MAANDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNA 60
           MAANDVPCCEP FW+YL+ICVGLV+FAGLMSGLTLGLMSLSLVDLEVL+++G+P DRKNA
Sbjct: 1   MAANDVPCCEPRFWMYLLICVGLVAFAGLMSGLTLGLMSLSLVDLEVLVKSGRPDDRKNA 60

Query: 61  EKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAV 120
            KILPIVKNQHLLLCTLLI NAMAMEALPIF+DALLPAW +IVISVTLIL FGEIIPQA+
Sbjct: 61  AKILPIVKNQHLLLCTLLISNAMAMEALPIFIDALLPAWGAIVISVTLILTFGEIIPQAI 120

Query: 121 CSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGN 180
           CSRYGLSVGAKLSV+VR++V+VLFP++YPISKLLDWLLGK H ALLRRAELKT VDMHGN
Sbjct: 121 CSRYGLSVGAKLSVVVRVLVLVLFPLSYPISKLLDWLLGKGHFALLRRAELKTFVDMHGN 180

Query: 181 EAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHS 240
           +AGKGGELT +ETTIITGALDMT KTAKDAMT ++K+FSLDINS+LDEKTM LI+  GHS
Sbjct: 181 KAGKGGELTQEETTIITGALDMTLKTAKDAMTPLAKLFSLDINSKLDEKTMELILRKGHS 240

Query: 241 RVPIYVGTPTNIIGAIL-----------------------------------------GH 259
           RVPIY G PTNIIG IL                                         GH
Sbjct: 241 RVPIYSGYPTNIIGIILVKNLIKFHPEDETPIRNLTIRKVPRVRENLPLYDILNEFQQGH 300

Query: 260 SHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPS 319
           SHMAVV+K  N++K  A+  K +      +      +   G +K  + N           
Sbjct: 301 SHMAVVIKSHNEAKRPADSNKPELETATPVT-----EMELGHIKLQIGN----------- 344

Query: 320 VISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVDEEVIGIITLEDVMEEL 379
            I S+ D  +                         + +S+P  DE VIGIITLEDVMEEL
Sbjct: 345 -ICSNGDTDT-------------------------DGKSMPDFDENVIGIITLEDVMEEL 378

Query: 380 LQEEILDETDDYVDVHRKIKINM-LESQKSPSPGAAFVSRLRRTPMDSPIPSHHDQTPVS 438
           LQEEILDETD+YV VH K+K+NM +    S SPG   +  +  +P+ SP+ S+H     S
Sbjct: 379 LQEEILDETDEYVAVHNKLKVNMEVRRSTSESPGGPRLQWM--SPVASPLSSYHHSPLSS 436

Query: 439 SYNHSPIIHSPALPYIQSPFIRPTLSASPGKSLPTSLATLTETTGHSPPAHRV 491
           SYNHSPI+HSP  P+I SPF  P+LS+SP     +S    +  +  + P+H++
Sbjct: 437 SYNHSPILHSPIPPHIHSPFNPPSLSSSPRNYFHSSPTPCSVPSLSASPSHKL 489

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195614100|gb|ACG28880.1| hemolysin [Zea mays] gi|413957100|gb|AFW89749.1| hemolysin [Zea mays]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 289/527 (54%), Positives = 350/527 (66%), Gaps = 77/527 (14%)

Query: 1   MAANDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNA 60
           MA+++  CC  MFWVYL+ CVGLV FAGLMSGLTLGLMSLSLVDLEVL +AG P+D+ NA
Sbjct: 1   MASHEA-CCGTMFWVYLMSCVGLVMFAGLMSGLTLGLMSLSLVDLEVLAKAGTPKDKLNA 59

Query: 61  EKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAV 120
            +ILP+VKNQHLLLCTLLIGN++AMEALPIFLD L+P + +++ISVTLILAFGEI+PQA+
Sbjct: 60  ARILPVVKNQHLLLCTLLIGNSLAMEALPIFLDTLVPPYVAVLISVTLILAFGEIMPQAI 119

Query: 121 CSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGN 180
           C+RYGLSVGAK + +VRL++I+ FP+AYPISKLLDWLLGK H AL+RRAELKTLVDMHGN
Sbjct: 120 CTRYGLSVGAKAAPVVRLLLILFFPVAYPISKLLDWLLGKGHFALMRRAELKTLVDMHGN 179

Query: 181 EAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHS 240
           EAGKGGELTHDETTIITGAL++TQK AKDAMTA+S+ FSLDIN++LD  TMG+I++ GHS
Sbjct: 180 EAGKGGELTHDETTIITGALELTQKIAKDAMTAISETFSLDINAKLDLHTMGMIMTRGHS 239

Query: 241 RVPIYVGTPTNIIGAIL-----------------------------------------GH 259
           RVPIY G P+NIIG IL                                         GH
Sbjct: 240 RVPIYSGMPSNIIGLILVKNLITCRAEDEVPIRNLTIRKIPRVADDLPLYDILNEFQKGH 299

Query: 260 SHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPS 319
           SHMAVV+K   ++    E +KS      D  IN    +  G               +SPS
Sbjct: 300 SHMAVVIKRTKEAGVSTEKQKSTTA---DYKINPKDARADG---------------SSPS 341

Query: 320 VISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLP--SVDEEVIGIITLEDVME 377
             S+ +  + ++ K  D     KK ER+   I     + LP  S+DEE +GIIT+EDVME
Sbjct: 342 YGSTAVSRRINIEKHGDGRPYNKKSERKRENILDFNNDPLPSYSMDEEAVGIITMEDVME 401

Query: 378 ELLQEEILDETDDYVDVHRKIKINMLESQKSPSP-----GAAFVSRLRRTPMDSPI-PSH 431
           ELLQEEI DETD+YVDVH KI+INML   KS SP     G       RRTPM SP  P H
Sbjct: 402 ELLQEEIYDETDEYVDVHNKIRINMLTPGKSLSPAISPGGGPLSQGFRRTPMASPFSPYH 461

Query: 432 HD----QTPVSSYNHSPIIHSPALPYIQSPFIRPTLSASPGKSLPTS 474
           H     ++P S++  SP      LP I SP   PT + +PG+S P  
Sbjct: 462 HGSSVLRSPASNHGQSP----GTLPTILSPGRSPT-AQTPGQSSPNG 503

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8953734|dbj|BAA98097.1| unnamed protein product [Arabidopsis thaliana]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/483 (58%), Positives = 341/483 (70%), Gaps = 20/483 (4%)

Query: 1   MAANDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNA 60
           MAANDVPCCE MFWVYL++CV LV FAGLMSGLTLGLMSLS+V+LEV+++AG+P DRKNA
Sbjct: 1   MAANDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNA 60

Query: 61  EKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAV 120
           EKILP+VKNQHLLLCTLLIGNA+AMEALPIF+D+LLPAW +I+ISVTLILAFGEIIPQAV
Sbjct: 61  EKILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAV 120

Query: 121 CSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGN 180
           CSRYGLS+GAKLS LVRLI+IV FP++YPISKLLD LLGKRHS LL RAELK+LV MHGN
Sbjct: 121 CSRYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGN 180

Query: 181 EAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHS 240
           EAGKGGELTHDETTII+GALDM+QK+AKDAMT +S+IFSLDIN +LDEKTMGLI S GHS
Sbjct: 181 EAGKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHS 240

Query: 241 RVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKE--IAEMEKS--KAPMQHDININSNLK 296
           R+PIY   P  IIG IL  + + V  + +   ++  I  M K     P+   +NI    +
Sbjct: 241 RIPIYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGR 300

Query: 297 QRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISK--E 354
                + G   +   N  ++  S       I  S  K A++ L +      +        
Sbjct: 301 SHMAAVVGTKNHTNTNTPVHEKS-------INGSPNKDANVFLSIPALNSSETSHQSPIR 353

Query: 355 ELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDVHRKIKINMLESQKSPSPGAA 414
            ++S+   DEEVIGIITLEDVMEEL+QEEI DETD YV++H++I INM  S  SP   A 
Sbjct: 354 YIDSISDEDEEVIGIITLEDVMEELIQEEIYDETDQYVELHKRITINMPMSGNSPE-TAT 412

Query: 415 FVSRLRRTPMDSPIPSHHDQTPVSSYNHSPIIHSPA-LPYIQSPFIRPTLSASPGKSLPT 473
           + S L      SPI  +       S   S ++ SP   PY  S  +RPTL ASP    P+
Sbjct: 413 WASELA-----SPISPYRSSLLSPSIMISTLLRSPINSPYRHSLLLRPTLHASPPAQSPS 467

Query: 474 SLA 476
            L+
Sbjct: 468 ILS 470

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42568492|ref|NP_200091.2| CBS domain-containing protein with a domain of unknown function (DUF21) [Arabidopsis thaliana] gi|342179476|sp|Q9LTD8.2|Y5279_ARATH RecName: Full=DUF21 domain-containing protein At5g52790; AltName: Full=CBS domain-containing protein CBSDUF5 gi|332008877|gb|AED96260.1| CBS domain-containing protein with a domain of unknown function (DUF21) [Arabidopsis thaliana]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/483 (58%), Positives = 341/483 (70%), Gaps = 20/483 (4%)

Query: 1   MAANDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNA 60
           MAANDVPCCE MFWVYL++CV LV FAGLMSGLTLGLMSLS+V+LEV+++AG+P DRKNA
Sbjct: 1   MAANDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNA 60

Query: 61  EKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAV 120
           EKILP+VKNQHLLLCTLLIGNA+AMEALPIF+D+LLPAW +I+ISVTLILAFGEIIPQAV
Sbjct: 61  EKILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAV 120

Query: 121 CSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGN 180
           CSRYGLS+GAKLS LVRLI+IV FP++YPISKLLD LLGKRHS LL RAELK+LV MHGN
Sbjct: 121 CSRYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGN 180

Query: 181 EAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHS 240
           EAGKGGELTHDETTII+GALDM+QK+AKDAMT +S+IFSLDIN +LDEKTMGLI S GHS
Sbjct: 181 EAGKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHS 240

Query: 241 RVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKE--IAEMEKS--KAPMQHDININSNLK 296
           R+PIY   P  IIG IL  + + V  + +   ++  I  M K     P+   +NI    +
Sbjct: 241 RIPIYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGR 300

Query: 297 QRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISK--E 354
                + G   +   N  ++  S       I  S  K A++ L +      +        
Sbjct: 301 SHMAAVVGTKNHTNTNTPVHEKS-------INGSPNKDANVFLSIPALNSSETSHQSPIR 353

Query: 355 ELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDVHRKIKINMLESQKSPSPGAA 414
            ++S+   DEEVIGIITLEDVMEEL+QEEI DETD YV++H++I INM  S  SP   A 
Sbjct: 354 YIDSISDEDEEVIGIITLEDVMEELIQEEIYDETDQYVELHKRITINMPMSGNSPE-TAT 412

Query: 415 FVSRLRRTPMDSPIPSHHDQTPVSSYNHSPIIHSP-ALPYIQSPFIRPTLSASPGKSLPT 473
           + S L      SPI  +       S   S ++ SP   PY  S  +RPTL ASP    P+
Sbjct: 413 WASELA-----SPISPYRSSLLSPSIMISTLLRSPINSPYRHSLLLRPTLHASPPAQSPS 467

Query: 474 SLA 476
            L+
Sbjct: 468 ILS 470

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218192002|gb|EEC74429.1| hypothetical protein OsI_09806 [Oryza sativa Indica Group]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 287/520 (55%), Positives = 354/520 (68%), Gaps = 68/520 (13%)

Query: 8   CCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIV 67
           CC  MFWVYL+ CVGLV FAGLMSGLTLGLMSLSLVDLEVL +AG P D+ NA +ILP+V
Sbjct: 7   CCGAMFWVYLMSCVGLVMFAGLMSGLTLGLMSLSLVDLEVLAKAGTPTDKDNAARILPVV 66

Query: 68  KNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLS 127
           KNQHLLLCTLLIGN++AMEALPIFLD+L+P++ +I+ISVTLILAFGEI+PQA+C+RYGLS
Sbjct: 67  KNQHLLLCTLLIGNSLAMEALPIFLDSLVPSFGAILISVTLILAFGEIMPQAICTRYGLS 126

Query: 128 VGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGE 187
           VGAK + +VR+++IV FP+AYPISKLLDW+LGK H AL+RRAELKTLVDMHGNEAGKGGE
Sbjct: 127 VGAKAAPVVRVLLIVFFPVAYPISKLLDWVLGKGHVALMRRAELKTLVDMHGNEAGKGGE 186

Query: 188 LTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVG 247
           LTHDETTIITGAL+MTQKTAKDAMT +S+ FSLDIN++LD  TMG+I++ GHSRVPIY G
Sbjct: 187 LTHDETTIITGALEMTQKTAKDAMTPISETFSLDINAKLDLHTMGMIMTKGHSRVPIYSG 246

Query: 248 TPTNIIGAIL-----------------------------------------GHSHMAVVV 266
           TP NIIG IL                                         GHSHMAVVV
Sbjct: 247 TPNNIIGLILVKNLITCQPEDEVPIRNVTIRKIPRVSDDLPLYDILNEFQKGHSHMAVVV 306

Query: 267 KCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDID 326
           +   +    A +EK+ +  + D   NS++   +      + +   +A   SPS +S    
Sbjct: 307 RRIKEPG--ASIEKTYSD-RSDYKTNSDISDYK------INHRDAHADGLSPSRVSIAGS 357

Query: 327 IQSSMAKSADLHLCLKKWERQDVKISKEELESLP--SVDEEVIGIITLEDVMEELLQEEI 384
            +S++ K+ ++ L  KK E++   I       LP  S+D+E +GIIT+EDVME+LLQE+I
Sbjct: 358 RRSNIEKNGEVRL-YKKSEKKRDNILDFNSGPLPSYSLDQEAVGIITMEDVMEQLLQEDI 416

Query: 385 LDETDDYVDVHRKIKINMLESQKSPSP-----GAAFVSRLRRTPMDSPIPSHHD-----Q 434
           LDETD+YVDVH KIKINML   KS SP            LRRTPM SP+ S+H      +
Sbjct: 417 LDETDEYVDVHNKIKINMLPLGKSLSPTISPSNGPHSQGLRRTPMTSPLSSYHHGGSILR 476

Query: 435 TPVSSYNHSPIIHSPALPYIQSPFIRPTLSASPGKSLPTS 474
           +P S+   SP      LP I SP   P  S +P +S P S
Sbjct: 477 SPASNNPQSP----GTLPTIISPERSPA-SQAPSRSSPNS 511

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115450439|ref|NP_001048820.1| Os03g0125800 [Oryza sativa Japonica Group] gi|108705954|gb|ABF93749.1| CBS domain-containing protein, putative, expressed [Oryza sativa Japonica Group] gi|113547291|dbj|BAF10734.1| Os03g0125800 [Oryza sativa Japonica Group] gi|215712344|dbj|BAG94471.1| unnamed protein product [Oryza sativa Japonica Group] gi|222624121|gb|EEE58253.1| hypothetical protein OsJ_09244 [Oryza sativa Japonica Group]

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 284/520 (54%), Positives = 350/520 (67%), Gaps = 68/520 (13%)

Query: 8   CCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIV 67
           CC  MFWVYL+ CVGLV FAGLMSGLTLGLMSLSLVDLEVL +AG P D+ NA +ILP+V
Sbjct: 7   CCGAMFWVYLMSCVGLVMFAGLMSGLTLGLMSLSLVDLEVLAKAGTPTDKDNAARILPVV 66

Query: 68  KNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLS 127
           KNQHLLLCTLLIGN++AMEALPIFLD+L+P++ +I+ISVTLILAFGEI+PQA+C+RYGLS
Sbjct: 67  KNQHLLLCTLLIGNSLAMEALPIFLDSLVPSFGAILISVTLILAFGEIMPQAICTRYGLS 126

Query: 128 VGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGE 187
           VGAK + +VR+++IV FP+AYPISKLLDW+LGK H AL+RRAELKTLVDMHGNEAGKGGE
Sbjct: 127 VGAKAAPVVRVLLIVFFPVAYPISKLLDWVLGKGHVALMRRAELKTLVDMHGNEAGKGGE 186

Query: 188 LTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVG 247
           LTHDETTIITGAL+MTQKTAKDAMT +S+ FSLDIN++LD  TMG+I++ GHSRVPIY G
Sbjct: 187 LTHDETTIITGALEMTQKTAKDAMTPISETFSLDINAKLDLHTMGMIMTKGHSRVPIYSG 246

Query: 248 TPTNIIGAIL-----------------------------------------GHSHMAVVV 266
           TP NIIG IL                                         GHSHMAVVV
Sbjct: 247 TPNNIIGLILVKNLITCQPEDEVPIRNVTIRKIPRVSDDLPLYDILNEFQKGHSHMAVVV 306

Query: 267 KCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDID 326
           +          +++  A ++   +  S+ K         + +   +A   SPS +S    
Sbjct: 307 R---------RIKEPGASIEKTYSDRSDYKTNSDRSDYKINHRDAHADGLSPSRVSIAGS 357

Query: 327 IQSSMAKSADLHLCLKKWERQDVKISKEELESLP--SVDEEVIGIITLEDVMEELLQEEI 384
            +S++ K+ ++ L  KK E++   I       LP  S+D+E +GIIT+EDVME+LLQE+I
Sbjct: 358 RRSNIEKNGEVRL-YKKSEKKRDNILDFNSGPLPSYSLDQEAVGIITMEDVMEQLLQEDI 416

Query: 385 LDETDDYVDVHRKIKINMLESQKSPSP-----GAAFVSRLRRTPMDSPIPSHHD-----Q 434
           LDETD+YVDVH KIKINML   KS SP            LRRTPM SP+ S+H      +
Sbjct: 417 LDETDEYVDVHNKIKINMLPLGKSLSPTISPSNGPHSQGLRRTPMTSPLSSYHHGGSILR 476

Query: 435 TPVSSYNHSPIIHSPALPYIQSPFIRPTLSASPGKSLPTS 474
           +P S+   SP      LP I SP   P  S +P +S P S
Sbjct: 477 SPASNNPQSP----GTLPTIISPERSPA-SQAPSRSSPNS 511

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796089|ref|XP_002865929.1| hypothetical protein ARALYDRAFT_495342 [Arabidopsis lyrata subsp. lyrata] gi|297311764|gb|EFH42188.1| hypothetical protein ARALYDRAFT_495342 [Arabidopsis lyrata subsp. lyrata]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/488 (57%), Positives = 349/488 (71%), Gaps = 30/488 (6%)

Query: 1   MAANDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNA 60
           MAA+DVPCC  MFWVYL++CV LV+FAGLMSGLTLGLMSLSLV+LEV+++AG+P +RKNA
Sbjct: 1   MAADDVPCCATMFWVYLLVCVALVAFAGLMSGLTLGLMSLSLVELEVMIKAGEPHERKNA 60

Query: 61  EKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAV 120
           EKILP+VKNQHLLLCTLLIGNA+AMEALPIF+D+LLPAW +I+ISVTLILAFGEIIPQAV
Sbjct: 61  EKILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAV 120

Query: 121 CSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGN 180
           CSRYGLS+GAKLSVLVRLI+IV FP++YPISKLLD LLGKR+S LL RAELK+LV MHGN
Sbjct: 121 CSRYGLSIGAKLSVLVRLIIIVFFPLSYPISKLLDLLLGKRYSTLLGRAELKSLVYMHGN 180

Query: 181 EAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHS 240
           EAGKGGELTHDETTII+GALDM+QK+AKDAMT +S+IFSLDINS+LDEKTMGLI S GHS
Sbjct: 181 EAGKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINSKLDEKTMGLIASEGHS 240

Query: 241 RVPIYVGTPTNIIGAILGHSHMAVVVKCK-NDSKEIAEMEKSKAPMQHDININ----SNL 295
           R+PIY   P+ IIG IL  +    ++K +  D   I ++   + P + D+N+      N+
Sbjct: 241 RIPIYSVNPSVIIGFILVKN----LIKVRPEDETPIRDLPIRRMP-RVDLNLPLYDILNI 295

Query: 296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSAD-LHLCLKKWERQDVKISKE 354
            Q        V   +    +N+P     D  I  S  K A+ L + +      + +    
Sbjct: 296 FQTGRSHMAAVVGTKNYTNINTP---VHDKSINGSPNKDANVLSIPVMNSSESNRQSPIR 352

Query: 355 ELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDVHRKIKINMLESQKSPSPG-- 412
            ++++   DEE+IGIITLEDV+EEL+QEEI DETD  V +H++I INM  S  SP     
Sbjct: 353 YIDTIADEDEEIIGIITLEDVVEELIQEEIFDETDRCVQLHKRITINMPISGNSPETATW 412

Query: 413 ----AAFVSRLRRTPMDSPIPSHHDQTPVSSYNHSPIIHSPALPYIQSPFIRPTLSASPG 468
               A+ +S  R +P+    PS    T + S  +SP  H       QS F+RPTL ASP 
Sbjct: 413 ASELASPISPYRSSPLS---PSLMISTLLRSPINSPYRH-------QSSFLRPTLHASPP 462

Query: 469 KSLPTSLA 476
              P+ L+
Sbjct: 463 AQPPSVLS 470

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
TAIR|locus:2149659	500	AT5G52790 "AT5G52790" [Arabido	0.941	0.926	0.532	1e-116
TAIR|locus:2203746	527	AT1G47330 "AT1G47330" [Arabido	0.532	0.497	0.599	1.2e-100
TAIR|locus:2134273	424	AT4G33700 "AT4G33700" [Arabido	0.520	0.603	0.599	7.2e-88
TAIR|locus:2055155	423	AT2G14520 "AT2G14520" [Arabido	0.518	0.602	0.596	6.4e-87
TAIR|locus:2129540	494	AT4G14240 "AT4G14240" [Arabido	0.508	0.506	0.523	4.6e-84
TAIR|locus:2014520	499	AT1G03270 "AT1G03270" [Arabido	0.530	0.523	0.496	1e-80
TAIR|locus:2129535	495	AT4G14230 "AT4G14230" [Arabido	0.508	0.505	0.492	2.5e-77
ASPGD|ASPL0000049101	716	AN1876 [Emericella nidulans (t	0.512	0.351	0.378	2.3e-53
ASPGD|ASPL0000052186	484	AN0789 [Emericella nidulans (t	0.544	0.553	0.367	4.8e-52
POMBASE|SPCC4B3.03c	679	SPCC4B3.03c "mitochondrial mor	0.493	0.357	0.366	2.6e-50

TAIR|locus:2149659 AT5G52790 "AT5G52790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
 Identities = 257/483 (53%), Positives = 313/483 (64%)

Query:     1 MAANDVPCCEPMFWVYLVICVGLVSFAXXXXXXXXXXXXXXXVDLEVLMRAGQPQDRKNA 60
             MAANDVPCCE MFWVYL++CV LV FA               V+LEV+++AG+P DRKNA
Sbjct:     1 MAANDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNA 60

Query:    61 EKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAV 120
             EKILP+VKNQHLLLCTLLIGNA+AMEALPIF+D+LLPAW +I+ISVTLILAFGEIIPQAV
Sbjct:    61 EKILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAV 120

Query:   121 CSRYGLSVGAKXXXXXXXXXXXXFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGN 180
             CSRYGLS+GAK            FP++YPISKLLD LLGKRHS LL RAELK+LV MHGN
Sbjct:   121 CSRYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGN 180

Query:   181 EAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHS 240
             EAGKGGELTHDETTII+GALDM+QK+AKDAMT +S+IFSLDIN +LDEKTMGLI S GHS
Sbjct:   181 EAGKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHS 240

Query:   241 RVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKE--IAEMEKS--KAPMQHDININSNLK 296
             R+PIY   P  IIG IL  + + V  + +   ++  I  M K     P+   +NI    +
Sbjct:   241 RIPIYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGR 300

Query:   297 QRQGELKGNVQNEQFNAYMNXXXXXXXXXXXXXXMAKSADLHLCLKKWERQDVKISK--E 354
                  + G   +   N  ++                K A++ L +      +        
Sbjct:   301 SHMAAVVGTKNHTNTNTPVHEKSINGSPN-------KDANVFLSIPALNSSETSHQSPIR 353

Query:   355 ELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDVHRKIKINMLESQKSPSPGAA 414
              ++S+   DEEVIGIITLEDVMEEL+QEEI DETD YV++H++I INM  S  SP   A 
Sbjct:   354 YIDSISDEDEEVIGIITLEDVMEELIQEEIYDETDQYVELHKRITINMPMSGNSPET-AT 412

Query:   415 FVSRLRRTPMDSPIPSHHDQTPVSSYNHSPIIHSPA-LPYIQSPFIRPTLSASPGKSLPT 473
             + S L      SPI  +       S   S ++ SP   PY  S  +RPTL ASP    P+
Sbjct:   413 WASELA-----SPISPYRSSLLSPSIMISTLLRSPINSPYRHSLLLRPTLHASPPAQSPS 467

Query:   474 SLA 476
              L+
Sbjct:   468 ILS 470

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2203746 AT1G47330 "AT1G47330" [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
 Identities = 157/262 (59%), Positives = 199/262 (75%)

Query:     3 ANDVPCCEPMFWVYLVICVGLVSFAXXXXXXXXXXXXXXXVDLEVLMRAGQPQDRKNAEK 62
             ++D+PCC   F +Y+VI + LV+FA               VDLEVL+++G+PQDR NA K
Sbjct:     2 SSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGK 61

Query:    63 ILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCS 122
             I P+VKNQHLLLCTLLIGN+MAMEALPIFLD ++P W +I++SVTLIL FGEI+PQAVC+
Sbjct:    62 IFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCT 121

Query:   123 RYGLSVGAKXXXXXXXXXXXXFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEA 182
             RYGL VGA             FPI+YPISK+LDW+LGK H  LLRRAELKT V+ HGNEA
Sbjct:   122 RYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEA 181

Query:   183 GKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRV 242
             GKGG+LT DET+IITGAL++T+KTAKDAMT +S  FSL++++ L+ +T+  I+S GHSRV
Sbjct:   182 GKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRV 241

Query:   243 PIYVGTPTNIIGAILGHSHMAV 264
             P+Y   PT+IIG IL  + +AV
Sbjct:   242 PVYFRNPTHIIGLILVKNLLAV 263

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134273 AT4G33700 "AT4G33700" [Arabidopsis thaliana (taxid:3702)]

 Score = 769 (275.8 bits), Expect = 7.2e-88, Sum P(2) = 7.2e-88
 Identities = 154/257 (59%), Positives = 185/257 (71%)

Query:     1 MAANDVPCCEPMFWVYLVICVGLVSFAXXXXXXXXXXXXXXXVDLEVLMRAGQPQDRKNA 60
             MA   V CC P F++++ + V LV FA               VDLEVL ++G P+ RK A
Sbjct:     1 MAVEYV-CCSPNFFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYA 59

Query:    61 EKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAV 120
              KILP+VKNQHLLL TLLI NA AME LPIFLD L+ AW +I+ISVTLIL FGEIIPQ++
Sbjct:    60 AKILPVVKNQHLLLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSI 119

Query:   121 CSRYGLSVGAKXXXXXXXXXXXXFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGN 180
             CSRYGL++GA              P+A+PISKLLD+LLG R +AL RRAELKTLVD HGN
Sbjct:   120 CSRYGLAIGATVAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGN 179

Query:   181 EAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHS 240
             EAGKGGELTHDETTII GAL++++K  KDAMT +S IF +DIN++LD   M LI+  GHS
Sbjct:   180 EAGKGGELTHDETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHS 239

Query:   241 RVPIYVGTPTNIIGAIL 257
             RVP+Y   PTNIIG +L
Sbjct:   240 RVPVYYEQPTNIIGLVL 256

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055155 AT2G14520 "AT2G14520" [Arabidopsis thaliana (taxid:3702)]

 Score = 755 (270.8 bits), Expect = 6.4e-87, Sum P(2) = 6.4e-87
 Identities = 152/255 (59%), Positives = 185/255 (72%)

Query:     3 ANDVPCCEPMFWVYLVICVGLVSFAXXXXXXXXXXXXXXXVDLEVLMRAGQPQDRKNAEK 62
             A +  CC   F++++ + V LV FA               VDLEVL ++G P+DR +A K
Sbjct:     2 AVEYECCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAK 61

Query:    63 ILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCS 122
             ILP+VKNQHLLLCTLLI NA AMEALPIFLDAL+ AW +I+ISVTLIL FGEIIPQ+VCS
Sbjct:    62 ILPVVKNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCS 121

Query:   123 RYGLSVGAKXXXXXXXXXXXXFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEA 182
             R+GL++GA              P+A+PISKLLD+LLG    AL RRAELKTLVD+HGNEA
Sbjct:   122 RHGLAIGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEA 181

Query:   183 GKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRV 242
             GKGGELTHDETTII GAL++++K AKDAMT +S  F +DIN++LD   M LI+  GHSRV
Sbjct:   182 GKGGELTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRV 241

Query:   243 PIYVGTPTNIIGAIL 257
             P+Y    TNIIG +L
Sbjct:   242 PVYYEQRTNIIGLVL 256

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129540 AT4G14240 "AT4G14240" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 4.6e-84, Sum P(3) = 4.6e-84
 Identities = 132/252 (52%), Positives = 173/252 (68%)

Query:    14 WV-YLVICVGLVSFAXXXXXXXXXXXXXXXVDLEVLMRAGQPQDRKNAEKILPIVKNQHL 72
             W+ Y  I   LV FA               V+LE+L R+G P ++K A  I P+V+ QH 
Sbjct:    35 WITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPNEKKQAAAIFPVVQKQHQ 94

Query:    73 LLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKX 132
             LL TLL+ NAMAME LPI+LD L   + +I++SVT +LAFGE+IPQA+C+RYGL+VGA  
Sbjct:    95 LLVTLLLCNAMAMEGLPIYLDKLFNEYVAIILSVTFVLAFGEVIPQAICTRYGLAVGANF 154

Query:   133 XXXXXXXXXXXFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHDE 192
                        +PIA+PI K+LD +LG  + AL RRA+LK LV +H  EAGKGGELTHDE
Sbjct:   155 VWLVRILMTLCYPIAFPIGKILDLVLG-HNDALFRRAQLKALVSIHSQEAGKGGELTHDE 213

Query:   193 TTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNI 252
             TTII+GALD+T+KTA++AMT +   FSLD+NS+LD + MG I++ GHSRVP+Y G P N+
Sbjct:   214 TTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNV 273

Query:   253 IGAILGHSHMAV 264
             IG +L  S + V
Sbjct:   274 IGLLLVKSLLTV 285

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014520 AT1G03270 "AT1G03270" [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 1.0e-80, Sum P(3) = 1.0e-80
 Identities = 130/262 (49%), Positives = 177/262 (67%)

Query:     3 ANDVPCCEPMFWVYLVICVGLVSFAXXXXXXXXXXXXXXXVDLEVLMRAGQPQDRKNAEK 62
             A D+    P ++V + +   LV FA               V+LE+L ++G   ++K A  
Sbjct:    23 AEDIRFGSPWWFVVVGVACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAA 82

Query:    63 ILPIVKNQHLLLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCS 122
             ILP+VK QH LL TLL+ NA AMEALPI LD +   + ++++SVT +LAFGEIIPQA+CS
Sbjct:    83 ILPVVKKQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICS 142

Query:   123 RYGLSVGAKXXXXXXXXXXXXFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEA 182
             RYGL+VGA             +PIAYPI K+LD ++G  +  L RRA+LK LV +H  EA
Sbjct:   143 RYGLAVGANFLWLVRILMIICYPIAYPIGKVLDAVIG-HNDTLFRRAQLKALVSIHSQEA 201

Query:   183 GKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRV 242
             GKGGELTH+ET II+GALD++QKTA++AMT +   FSLD+N++LD +T+G I+S GHSR+
Sbjct:   202 GKGGELTHEETMIISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRI 261

Query:   243 PIYVGTPTNIIGAILGHSHMAV 264
             P+Y+G P NIIG +L  S + V
Sbjct:   262 PVYLGNPKNIIGLLLVKSLLTV 283

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129535 AT4G14230 "AT4G14230" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 2.5e-77, Sum P(2) = 2.5e-77
 Identities = 124/252 (49%), Positives = 170/252 (67%)

Query:    14 WV-YLVICVGLVSFAXXXXXXXXXXXXXXXVDLEVLMRAGQPQDRKNAEKILPIVKNQHL 72
             W+ Y  I   LV FA               V+LE+L R+G P+++K +  I P+V+ QH 
Sbjct:    34 WITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPKEKKQSAAIFPVVQKQHQ 93

Query:    73 LLCTLLIGNAMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKX 132
             LL TLL+ NA+AME LPI+LD +   + +I++SVT +L  GE+IPQA+C+RYGL+VGA  
Sbjct:    94 LLVTLLLFNALAMEGLPIYLDKIFNEYVAIILSVTFVLFVGEVIPQAICTRYGLAVGANL 153

Query:   133 XXXXXXXXXXXFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHDE 192
                        +PI++PI+K+LDW+LG  +  L RRA+LK LV +HG  AGKGGELTHDE
Sbjct:   154 VWLVRILMVLSYPISFPIAKMLDWVLG-HNDPLFRRAQLKALVSIHGEAAGKGGELTHDE 212

Query:   193 TTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNI 252
             TTII+GALD+T+KTA++AMT +   FSLD+NS+LD + M  I + GHSRVP+Y   P N+
Sbjct:   213 TTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDREAMDKIQARGHSRVPVYSDNPKNV 272

Query:   253 IGAILGHSHMAV 264
             IG +L  S + V
Sbjct:   273 IGLLLVKSLLTV 284

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

ASPGD|ASPL0000049101 AN1876 [Emericella nidulans (taxid:162425)]

 Score = 449 (163.1 bits), Expect = 2.3e-53, Sum P(2) = 2.3e-53
 Identities = 97/256 (37%), Positives = 144/256 (56%)

Query:     6 VPCCEPMFWVYLVICVGLVSFAXXXXXXXXXXXXXXXVDLEVLMRAGQ-PQDRKNAEKIL 64
             +P  +   W+YL +   LV                  V L+V+  +G  P +RKNA  +L
Sbjct:    54 LPANDATLWLYLGVAAALVLTGGAFAGLTIALMGQDEVYLQVIQTSGDSPSERKNAASVL 113

Query:    65 PIVKN-QHLLLCTLLIGNAMAMEALPIFLDALLPA-WASIVISVTLILAFGEIIPQAVCS 122
              ++K  +H +L TLL+ N +  E LPI LD  L   W +++ S  LI+ FGEI+PQ++C 
Sbjct:   114 RLLKRGKHWVLVTLLLSNVITNETLPIILDRSLGGGWPAVLGSTVLIVIFGEIVPQSICV 173

Query:   123 RYGLSVGAKXXXXXXXXXXXXFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEA 182
             RYGL +GA              P+A+P++KLLD LLG+ H  + ++A LKTLV +H    
Sbjct:   174 RYGLPIGAWMAPCVLGLMYLMAPVAWPVAKLLDRLLGEDHGTIYKKAGLKTLVTLHKTLG 233

Query:   183 GKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRV 242
               G +L  DE TII+  LD+ +K+    MT M  +F++  ++ LDE TM LI+S G+SR+
Sbjct:   234 EAGEQLNSDEVTIISAVLDLKEKSVGAIMTPMEDVFTMSADTVLDEPTMDLILSQGYSRI 293

Query:   243 PIYVG-TPTNIIGAIL 257
             PI+    P N IG +L
Sbjct:   294 PIHSPENPRNFIGMLL 309

GO:0030026 "cellular manganese ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000052186 AN0789 [Emericella nidulans (taxid:162425)]

 Score = 455 (165.2 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
 Identities = 101/275 (36%), Positives = 154/275 (56%)

Query:    14 WVYLVICVGLVSFAXXXXXXXXXXXXXXXVDLEVLMRAGQPQDRKNAEKILPIV-KNQHL 72
             W  L   V LV                  V L+VL  +G   ++K+A  +L ++ K +H 
Sbjct:    44 WFNLSAAVALVLIGGVFAGLTIALMGQDAVHLQVLATSGDGPEQKHARTVLGLISKGKHW 103

Query:    73 LLCTLLIGNAMAMEALPIFLDALLPA-WASIVISVTLILAFGEIIPQAVCSRYGLSVGAK 131
             +L TLL+GN +  E+LPI LD  L   W +++ S  LI+ FGEIIPQ+VC RYGL +GA 
Sbjct:   104 VLVTLLLGNVVVNESLPIVLDKTLGGGWPAVLGSTVLIVIFGEIIPQSVCVRYGLPIGAY 163

Query:   132 XXXXXXXXXXXXFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGE-LTH 190
                          P+A+P ++LLD+LLG+ H  + +++ LKTLV +H +   +  E LT 
Sbjct:   164 LSPAVLVLMYAFAPVAWPTARLLDYLLGENHGTVYKKSGLKTLVTLHKSLGSQPAERLTE 223

Query:   191 DETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYV-GTP 249
             DE TIIT  LD+  K  ++ MT M  +F++  N+ LDEKTM LI+S G SR+P++  G P
Sbjct:   224 DEVTIITAVLDLKAKPVREIMTPMESVFTMPSNAVLDEKTMELILSAGFSRIPVHAPGNP 283

Query:   250 TNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP 284
              + +G +L  +   ++    +D+K + E   +  P
Sbjct:   284 GDFLGMLLVKT---LITYDPDDAKRVKEFVLATLP 315

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPCC4B3.03c SPCC4B3.03c "mitochondrial morphology protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 422 (153.6 bits), Expect = 2.6e-50, Sum P(2) = 2.6e-50
 Identities = 91/248 (36%), Positives = 145/248 (58%)

Query:    13 FWVYLVICVGLVSFAXXXXXXXXXXXXXXXVDLEVLMRAGQPQDRKNAEKILPIVKN-QH 71
             +W+ L+I   L+                  + L+VL ++G   +R +A K+L +++  +H
Sbjct:    62 YWMKLIISAVLILLGGVFAGLTIGLMGCDDLHLQVLEQSGDASERVHARKVLKLLRRGKH 121

Query:    72 LLLCTLLIGNAMAMEALPIFLDALLPA-WASIVISVTLILAFGEIIPQAVCSRYGLSVGA 130
              +L TLL+GN +  E LPI  D+++   W +++IS  +I+ FGE+IPQA C RYGLS+GA
Sbjct:   122 WVLVTLLLGNVIVNETLPIVFDSIIGGGWPAVLISTAMIVIFGEVIPQATCVRYGLSIGA 181

Query:   131 KXXXXXXXXXXXXFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTH 190
             K            +PIAYP + +LD  LG+  S + +++ LKTLV +H  + G   +L  
Sbjct:   182 KLEPIVLFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLKTLVTLH-RDLGID-KLNQ 239

Query:   191 DETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYV-GTP 249
             DE TIIT  LD+ +K A+  MT +  +F+L ++  LDE  +G II  G+SR+P++  G P
Sbjct:   240 DEVTIITAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIGEIICAGYSRIPVHKPGFP 299

Query:   250 TNIIGAIL 257
              + IG +L
Sbjct:   300 HDFIGMLL 307

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030026 "cellular manganese ion homeostasis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LTD8	Y5279_ARATH	No assigned EC number	0.5859	0.9410	0.926	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	492
pfam01595	182	pfam01595, DUF21, Domain of unknown function DUF21	3e-33
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	1e-31
COG4536	423	COG4536, CorB, Putative Mg2+ and Co2+ transporter	8e-19
TIGR03520	408	TIGR03520, GldE, gliding motility-associated prote	7e-16
COG4535	293	COG4535, CorC, Putative Mg2+ and Co2+ transporter	1e-05
PRK11573	413	PRK11573, PRK11573, hypothetical protein; Provisio	1e-04
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	0.003

>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21

 Score =  124 bits (313), Expect = 3e-33
 Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 20/189 (10%)

Query: 16  YLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLC 75
            L+I V L+  +   S     L+SLS   LE L   G     K A ++L ++ N   LL 
Sbjct: 2   LLLIIVLLLLLSAFFSASETALVSLSRSRLEELAEEG----NKGARRLLKLLANPDRLLA 57

Query: 76  TLLIGNAMAMEALPIFLDALLP--------AWASIVISVTLILAFGEIIPQAVCSRYGLS 127
           TLL+GN +A   L                    + ++S  LIL FGEI+P+ +  R    
Sbjct: 58  TLLLGNTLANILLGALATLAAAELLLGSLGVLLATLVSTLLILVFGEILPKTLARRNPER 117

Query: 128 VGAKLSVLVRLIVIVLFPIAYPISKLLDWLLG----KRHSALLRRAELKTLVDMHGNEAG 183
           +  +L+  +R+++ +L+P+ + +SKL + LL     K     +   EL+ LVD    E  
Sbjct: 118 IALRLAPPLRVLMKLLYPLVWLLSKLSNLLLRLFGVKPEGPAVTEEELRALVDEGEEE-- 175

Query: 184 KGGELTHDE 192
             G +  +E
Sbjct: 176 --GVIEEEE 182

This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Treponema hyodysenteriae hemolysin C that does not contain this domain. This domain is found in the N-terminus of the proteins adjacent to two intracellular CBS domains pfam00571. Length = 182

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score =  125 bits (317), Expect = 1e-31
 Identities = 64/289 (22%), Positives = 125/289 (43%), Gaps = 22/289 (7%)

Query: 11  PMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQ 70
               + L++ + L++ +   S     L+SL    LE L   G     K A+  L +++  
Sbjct: 1   MSLILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEG----NKRAKAALKLIERL 56

Query: 71  HLLLCTLLIGN-------------AMAMEALPIFLDALLPAWASIVISVTLILAFGEIIP 117
           +  L T+ +G              A+A    P+     L A  S  I   L + FGE++P
Sbjct: 57  NRYLSTVQLGITLVSLLLGAVGEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVP 116

Query: 118 QAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKRHSALLRRAELKTLVDM 177
           +++  R    V   ++  +R    +L+P+ + ++++ + +L       +    L +  + 
Sbjct: 117 KSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEE 176

Query: 178 HG--NEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLII 235
               +E+ + G L  +E  +I   LD+  +T ++ MT  + I +LD+   ++E  + LI+
Sbjct: 177 LELVSESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEE-LIELIL 235

Query: 236 SNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP 284
            +GHSR+P+Y G   NIIG +  H    +       S     +      
Sbjct: 236 ESGHSRIPVYDGDLDNIIGIV--HVKDLLRALLDGQSDLDLRVLVRPPL 282

Length = 429

>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

 Score = 88.1 bits (219), Expect = 8e-19
 Identities = 64/278 (23%), Positives = 128/278 (46%), Gaps = 25/278 (8%)

Query: 12  MFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQH 71
             W+ ++  + L+  +   SG    L +L+   L  L + G     + A+++  +++   
Sbjct: 1   PTWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGN----RGAKRVEKLLEKPD 56

Query: 72  LLLCTLLIGNAMAMEALPIFLDALL--------PAWASIVISVTLILAFGEIIPQAVCSR 123
            L+ T+LIGN +           L          A A+ V++  +IL F E++P+ + + 
Sbjct: 57  RLIGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTF-VILVFAEVLPKTIAAL 115

Query: 124 YGLSVGAKLSVLVRLIVIVLFPIAY---PISKLLDWLLGKR----HSALLRRAELKTLVD 176
           Y   V    S ++ ++V +  P+ +    I++ L  LLG       S L  + EL+T V+
Sbjct: 116 YPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVN 175

Query: 177 MHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIIS 236
             G+E    G +   +  ++ G LD+   T  D M   ++I  +DI+   +E  +  ++ 
Sbjct: 176 ESGSE----GSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEE-IVRQLLH 230

Query: 237 NGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKE 274
           + H+R+P+Y     NIIG +     + ++ +    +KE
Sbjct: 231 SPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKE 268

Length = 423

>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE

 Score = 78.9 bits (195), Expect = 7e-16
 Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 26/243 (10%)

Query: 27  AGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGN----- 81
           + L+SG  +   SLS  DL       +  + K  + ++ ++     LL T+LI N     
Sbjct: 8   SALVSGSEVAFFSLSPTDLNDE----EEDNSKKEQIVINLLDRPKKLLATILIANNFINI 63

Query: 82  -------AMAMEALPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSV 134
                  +++      F   LL     +VI   LIL FGEI+P+   +R  L     ++ 
Sbjct: 64  AIVLLFTSLSDNLFGSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAY 123

Query: 135 LVRLIVIVLFPIAYP---ISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHD 191
            + ++  V  PI+ P   I+  +    GK+ S +     +  L      E     + T +
Sbjct: 124 PINILDKVFSPISLPLRAITNFIHKKFGKQKSNI----SVDQL--SQALELTDEEDTTKE 177

Query: 192 ETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTN 251
           E  I+ G +       K  M     IF+LDI +   E  +  II NG+SR+P+Y  T  N
Sbjct: 178 EQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSE-IIPKIIENGYSRIPVYKETIDN 236

Query: 252 IIG 254
           I G
Sbjct: 237 ITG 239

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. Length = 408

>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 168 RAELKTLV-DMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRL 226
           R EL  L+ D   NE      +  D   ++ G +D+     +D M   S++ +L  N  L
Sbjct: 34  REELLELIRDSEQNEL-----IDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTL 88

Query: 227 DEKTMGLIISNGHSRVPIYVGTPTNIIGAIL 257
           DE    +II + HSR P+      ++ G +L
Sbjct: 89  DECL-DVIIESAHSRFPVISEDKDHVEGILL 118

Length = 293

>gnl|CDD|236933 PRK11573, PRK11573, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 56/239 (23%), Positives = 112/239 (46%), Gaps = 27/239 (11%)

Query: 31  SGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMA---MEA 87
           SG   G+M+L+   L  + + G    ++  EK+L   +    L+  +LIGN +      A
Sbjct: 9   SGSETGMMTLNRYRLRHMAKQGNRSAKR-VEKLL---RKPDRLISLVLIGNNLVNILASA 64

Query: 88  LPIFLDALLPAWASIVISVT----LILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVL 143
           L   +   L   A + I+      ++L F E++P+ + + Y   V    S L+  + I++
Sbjct: 65  LGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILM 124

Query: 144 FPIAY---PISKLLDWLLGKRHSALLRRA----ELKTLVDMHGNEAGKGGELTHDETTII 196
            P+ +    I++LL  L+G +   ++  A    EL+T+V    +E+    +++     ++
Sbjct: 125 MPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEELRTIV----HESRS--QISRRNQDML 178

Query: 197 TGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKT-MGLIISNGHSRVPIYVGTPTNIIG 254
              LD+ + T  D M   ++I  +DIN   D K+ +  +  + H R+ +Y  +  + I 
Sbjct: 179 LSVLDLEKVTVDDIMVPRNEIVGIDIND--DWKSILRQLTHSPHGRIVLYRDSLDDAIS 235

Length = 413

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 3/31 (9%)

Query: 362 VDE--EVIGIITLEDVMEELLQEEILDETDD 390
           VDE   V G++TLED++EE++  EI DE D+
Sbjct: 308 VDEYGGVEGLVTLEDIIEEIVG-EIPDEHDE 337

Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	492
PRK11573	413	hypothetical protein; Provisional	100.0
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	100.0
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	100.0
COG1253	429	TlyC Hemolysins and related proteins containing CB	100.0
KOG2118	498	consensus Predicted membrane protein, contains two	100.0
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.97
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.97
PF01595	183	DUF21: Domain of unknown function DUF21; InterPro:	99.96
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.3
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.29
COG2524	294	Predicted transcriptional regulator, contains C-te	99.25
COG3620	187	Predicted transcriptional regulator with C-termina	98.98
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.97
COG4109	432	Predicted transcriptional regulator containing CBS	98.95
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.86
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.76
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.76
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.69
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.68
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.67
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.66
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.65
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.65
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.63
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.62
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.62
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.6
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.6
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.6
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.59
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.59
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.59
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.57
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.56
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.55
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.55
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.54
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.54
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.54
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.54
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.54
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.53
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.53
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.53
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.52
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.52
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.49
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.49
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.48
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.48
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.47
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.47
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.47
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.46
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.46
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.46
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.46
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.45
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.45
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.45
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.45
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.43
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.43
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.43
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.42
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.42
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.42
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.42
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.42
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.41
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.4
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.4
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.38
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.37
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.37
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.36
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.35
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.33
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.32
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.32
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.31
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.3
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.29
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.21
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.18
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.18
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.1
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.1
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.1
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.05
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.96
COG0517	117	FOG: CBS domain [General function prediction only]	97.92
COG2905	610	Predicted signal-transduction protein containing c	97.8
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.8
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	97.27
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.22
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	96.92
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	96.84
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	96.84
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	96.83
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	96.54
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	96.49
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	96.44
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	96.43
COG3448	382	CBS-domain-containing membrane protein [Signal tra	96.42
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	96.33
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	96.32
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	96.32
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	96.2
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	96.18
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	96.17
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	96.16
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	96.14
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	96.12
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	96.1
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	96.07
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	96.01
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	95.98
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	95.95
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	95.94
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	95.93
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	95.9
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	95.9
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	95.88
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	95.84
PLN02274	505	inosine-5'-monophosphate dehydrogenase	95.84
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	95.83
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	95.82
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	95.76
COG0517	117	FOG: CBS domain [General function prediction only]	95.76
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	95.73
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	95.72
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	95.66
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	95.65
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	95.64
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	95.58
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	95.58
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	95.55
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	95.54
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	95.53
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	95.53
PRK01862	574	putative voltage-gated ClC-type chloride channel C	95.49
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	95.46
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	95.45
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	95.42
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	95.4
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	95.34
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	95.31
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	95.3
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	95.28
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	95.27
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	95.26
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	95.22
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	95.17
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	95.13
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	95.12
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	95.08
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	94.92
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	94.86
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	94.8
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	94.69
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	94.69
PRK14869	546	putative manganese-dependent inorganic pyrophospha	94.69
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	94.67
COG2905	610	Predicted signal-transduction protein containing c	94.62
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	94.61
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	94.6
COG2524	294	Predicted transcriptional regulator, contains C-te	94.45
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	94.39
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	94.2
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	94.19
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	94.18
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	94.14
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	94.02
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	94.0
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	93.96
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	93.95
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	93.95
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	93.94
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	93.81
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	93.23
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	92.87
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	92.47
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	92.3
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	91.7
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	91.68
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	91.22
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	90.08
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	88.67
COG3620	187	Predicted transcriptional regulator with C-termina	87.62
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	86.43
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	84.85
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	83.32
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	80.77

>PRK11573 hypothetical protein; Provisional

Probab=100.00  E-value=4.4e-62  Score=514.36  Aligned_cols=355  Identities=18%  Similarity=0.282  Sum_probs=288.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCchhhhHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH----HHH---
Q 011147           24 VSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIFLD----ALL---   96 (492)
Q Consensus        24 lllsgffSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~A~~il~l~~~~~~lL~tllign~l~~~~l~~~~~----~l~---   96 (492)
                      +++||||||+|+|++|+++.+|+.++++|++    +|++++++++||+++|+|+|+||+++|.+.+.+..    .++   
T Consensus         2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~   77 (413)
T PRK11573          2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA   77 (413)
T ss_pred             eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            5789999999999999999999999999875    68899999999999999999999999987765432    223   


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh---hhhCCCCc----cccCHH
Q 011147           97 PAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLD---WLLGKRHS----ALLRRA  169 (492)
Q Consensus        97 ~~~~a~li~t~lilifGEiiPK~ia~~~~e~ia~~~a~~v~~~~~ll~Pi~~~is~il~---~llg~~~~----~~~s~e  169 (492)
                      +.+++++++|+++++|||++||++|.+||+++++++++++++++++++|++|+++++.+   +++|.++.    ..+|++
T Consensus        78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e  157 (413)
T PRK11573         78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE  157 (413)
T ss_pred             HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence            23446677889999999999999999999999999999999999999999999887765   45676532    468999


Q ss_pred             HHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCC
Q 011147          170 ELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTP  249 (492)
Q Consensus       170 EL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~  249 (492)
                      ||+.+++.    +.  +.++++|++||+|+|+|++++|+|+||||++|++++.+++++ ++++.+.++||||||||+++.
T Consensus       158 El~~lv~~----~~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~  230 (413)
T PRK11573        158 ELRTIVHE----SR--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL  230 (413)
T ss_pred             HHHHHHHH----Hh--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence            99999984    22  259999999999999999999999999999999999999998 999999999999999999999


Q ss_pred             CceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhh
Q 011147          250 TNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQS  329 (492)
Q Consensus       250 d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~  329 (492)
                      |||+|+|+.+|++    +...+..        .....+.           ..+  ..+++++|++++             
T Consensus       231 D~IiGiv~~kDll----~~~~~~~--------~~~~~~l-----------~~~--~r~~~~Vpe~~~-------------  272 (413)
T PRK11573        231 DDAISMLRVREAY----RLMTEKK--------EFTKENM-----------LRA--ADEIYFVPEGTP-------------  272 (413)
T ss_pred             CceEEEEEHHHHH----HHhhccC--------cCCHHHH-----------Hhh--ccCCeEeCCCCc-------------
Confidence            9999999955543    2211100        0000000           011  123567898875             


Q ss_pred             hhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcCccch--hhh----hhhhhcc
Q 011147          330 SMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYV--DVH----RKIKINM  402 (492)
Q Consensus       330 ~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~~~--d~~----~~irv~~  402 (492)
                             +.+++++|++++.| ++|+      ||||+++||||+|||+|||+| ||.||+|...  ++.    +.+.|+.
T Consensus       273 -------l~~lL~~~~~~~~~~AiVv------DEyG~~~GiVTleDilEeivG-ei~de~d~~~~~~i~~~~~~~~~v~G  338 (413)
T PRK11573        273 -------LSTQLVKFQRNKKKVGLVV------DEYGDIQGLVTVEDILEEIVG-DFTTSMSPTLAEEVTPQNDGSVIIDG  338 (413)
T ss_pred             -------HHHHHHHHHhcCCeEEEEE------ecCCCeEEEeeHHHHHHHHhC-CCCcccCcccccceEEecCCEEEEEe
Confidence                   45679999999999 9999      899999999999999999999 9999988521  121    2233332


Q ss_pred             cccc-------CCCCCCcccccc-cccCCCCCCCCCCCCCcccCCCC
Q 011147          403 LESQ-------KSPSPGAAFVSR-LRRTPMDSPIPSHHDQTPVSSYN  441 (492)
Q Consensus       403 ~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  441 (492)
                      ..+-       +..+|...|.|. |+.....|+||..||.+...+|+
T Consensus       339 ~~~l~d~~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~~Ge~~~~~~~~  385 (413)
T PRK11573        339 TANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIGEYD  385 (413)
T ss_pred             eeEHHHHHHHhCCCCCCCCCeeHHHHHHHHhCcCCCCCCEEEECCEE
Confidence            2211       235677789999 99999999999999999887764

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=100.00  E-value=1.5e-60  Score=502.37  Aligned_cols=353  Identities=22%  Similarity=0.341  Sum_probs=285.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCchhhhHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 011147           21 VGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDA----LL   96 (492)
Q Consensus        21 l~LlllsgffSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~A~~il~l~~~~~~lL~tllign~l~~~~l~~~~~~----l~   96 (492)
                      ++|+++||||||+|+|++|+++.+++.++++|++    +|+++++++++|+++|+|+|+||+++|++++.++..    ++
T Consensus         2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~   77 (408)
T TIGR03520         2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF   77 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678999999999999999999999999998874    688999999999999999999999999887654332    23


Q ss_pred             HH--------HHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh---hCCCCccc
Q 011147           97 PA--------WASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWL---LGKRHSAL  165 (492)
Q Consensus        97 ~~--------~~a~li~t~lilifGEiiPK~ia~~~~e~ia~~~a~~v~~~~~ll~Pi~~~is~il~~l---lg~~~~~~  165 (492)
                      +.        .++++++|+++++|||++||++|.+||++++.++++++++++++++|++|+++++++++   +|.+. ..
T Consensus        78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~  156 (408)
T TIGR03520        78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN  156 (408)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence            21        12455677889999999999999999999999999999999999999999999887654   56554 35


Q ss_pred             cCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEE
Q 011147          166 LRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIY  245 (492)
Q Consensus       166 ~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~  245 (492)
                      +|++||+.+++.    ++++| ++++|++||+|+|+|++++|+|+||||+++++++.+++++ ++++.+.++||||+|||
T Consensus       157 ~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~  230 (408)
T TIGR03520       157 ISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVY  230 (408)
T ss_pred             CCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEE
Confidence            899999999985    33345 6899999999999999999999999999999999999998 99999999999999999


Q ss_pred             eCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchh
Q 011147          246 VGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDI  325 (492)
Q Consensus       246 ~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l  325 (492)
                      +++.|+|+|+|+.+|+    ++.+.+.         ..++++              +.+  +++++|++++         
T Consensus       231 ~~~~d~ivGiv~~kDl----l~~~~~~---------~~~l~~--------------~~~--~~~~Vpe~~~---------  272 (408)
T TIGR03520       231 KETIDNITGVLYIKDL----LPHLNKK---------NFDWQS--------------LLR--EPYFVPENKK---------  272 (408)
T ss_pred             cCCCCceEEEEEHHHH----HhHhccC---------CCCHHH--------------HcC--CCeEeCCCCc---------
Confidence            9888999999995554    3222110         001111              222  3456788765         


Q ss_pred             hhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcCccchhh-----hhhhh
Q 011147          326 DIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDV-----HRKIK  399 (492)
Q Consensus       326 ~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~~~d~-----~~~ir  399 (492)
                                 +.+++++|++++.| ++|+      ||||+++||||+|||+|||+| ||.||+|.-.+.     .+.+.
T Consensus       273 -----------l~~ll~~m~~~~~~~aiVv------DE~G~~~GiVT~eDileeivg-ei~de~d~~~~~i~~~~~~~~~  334 (408)
T TIGR03520       273 -----------LDDLLRDFQEKKNHLAIVV------DEYGGTSGLVTLEDIIEEIVG-DISDEFDDEDLIYSKIDDNNYV  334 (408)
T ss_pred             -----------HHHHHHHHHhcCceEEEEE------cCCCCEEEEEEHHHHHHHHhC-CCCCcCCcCccceEEeCCCeEE
Confidence                       55679999999999 9999      899999999999999999999 999998843221     12233


Q ss_pred             hcccccc-------CCC---CC--Ccccccc-cccCCCCCCCCCCCCCcccCCC
Q 011147          400 INMLESQ-------KSP---SP--GAAFVSR-LRRTPMDSPIPSHHDQTPVSSY  440 (492)
Q Consensus       400 v~~~~~~-------~~~---~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  440 (492)
                      ++...+-       +..   .|  .+.|.|. |+.+...|+||..||++....|
T Consensus       335 v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~G~~~~~~~~  388 (408)
T TIGR03520       335 FEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEKITFENF  388 (408)
T ss_pred             EEeccCHHHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCCCCEEEECCE
Confidence            3211110       112   22  4678888 9999999999999999887655

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.8e-62  Score=487.94  Aligned_cols=368  Identities=21%  Similarity=0.328  Sum_probs=303.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCchhhhHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Q 011147           12 MFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIF   91 (492)
Q Consensus        12 ~~w~~l~iil~LlllsgffSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~A~~il~l~~~~~~lL~tllign~l~~~~l~~~   91 (492)
                      +.|..++++++|+++||||||+|+|+++++|.|++.++++|++    +|+++.+++++|+++++++||||+++|++.+.+
T Consensus         1 ~~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~----~Akrv~kLL~k~drlig~iLIGNNLvNilasal   76 (423)
T COG4536           1 PTWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNR----GAKRVEKLLEKPDRLIGTILIGNNLVNILASAL   76 (423)
T ss_pred             CcchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccch----hhHHHHHHhcCchheeeeeeecccHHHHHHHHH
Confidence            3588899999999999999999999999999999999999985    799999999999999999999999999876644


Q ss_pred             HH----HHHHH---HHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh---hhhCCC
Q 011147           92 LD----ALLPA---WASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLD---WLLGKR  161 (492)
Q Consensus        92 ~~----~l~~~---~~a~li~t~lilifGEiiPK~ia~~~~e~ia~~~a~~v~~~~~ll~Pi~~~is~il~---~llg~~  161 (492)
                      ..    .++|.   .+|+.+.|+++++|+|++||++|..|||+++..++.++.++..+|+|++|+++++++   ++||++
T Consensus        77 aT~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~  156 (423)
T COG4536          77 ATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGIN  156 (423)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            33    34443   357888899999999999999999999999999999999999999999999988765   567875


Q ss_pred             C----ccccCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHc
Q 011147          162 H----SALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISN  237 (492)
Q Consensus       162 ~----~~~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~  237 (492)
                      .    +...+.||||.+++.++    ++|...+++++|+-|+|+|++.+|+|||+||.+|..++.|++++ +.++.+..+
T Consensus       157 ~~~~~~~~~s~EElR~~v~~~~----~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s  231 (423)
T COG4536         157 LDQAVSQLSSKEELRTAVNESG----SEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHS  231 (423)
T ss_pred             cccccccccCHHHHHHHHHHhh----cccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhC
Confidence            3    35689999999999644    45777788999999999999999999999999999999999998 999999999


Q ss_pred             CCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCC
Q 011147          238 GHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNS  317 (492)
Q Consensus       238 ~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~  317 (492)
                      .|+|+|||+++.|||+|++|    +++.++.+.+.+...        -.++             ++-..++||+|+.++ 
T Consensus       232 ~HtRiplyr~~~DnIiGvlh----~r~llr~l~e~~~~~--------k~d~-------------~~~a~epyFVPe~Tp-  285 (423)
T COG4536         232 PHTRIPLYRDDLDNIIGVLH----VRDLLRLLNEKNEFT--------KEDI-------------LRAADEPYFVPEGTP-  285 (423)
T ss_pred             CCCceeeecCChhHhhhhhh----HHHHHHHhhccCccc--------HhHH-------------HHHhcCCeecCCCCc-
Confidence            99999999999999999997    445556655432110        0111             122456899999876 


Q ss_pred             CCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcCccchhhhh
Q 011147          318 PSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDVHR  396 (492)
Q Consensus       318 ~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~~~d~~~  396 (492)
                                         +.+.+.+|++++.| ++||      ||||++.|+||+|||+|||+| ||.||+|...+-..
T Consensus       286 -------------------l~~QL~~F~~~k~hialVV------DEYG~i~GLVTLEDIlEEIVG-dftde~d~~~~ev~  339 (423)
T COG4536         286 -------------------LSDQLVAFQRNKKHIALVV------DEYGDIQGLVTLEDILEEIVG-DFTDEHDTLAKEVI  339 (423)
T ss_pred             -------------------HHHHHHHHHHhcceEEEEE------eccCcEEeeeeHHHHHHHHhc-cccccCcccchhhc
Confidence                               34458999999999 9999      899999999999999999999 88899986543211


Q ss_pred             h---hhhcccccc---------CCCCC-Ccccccc-cccCCCCCCCCCCCCCcccCCCC
Q 011147          397 K---IKINMLESQ---------KSPSP-GAAFVSR-LRRTPMDSPIPSHHDQTPVSSYN  441 (492)
Q Consensus       397 ~---irv~~~~~~---------~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  441 (492)
                      .   ..+....+.         .-.+| .+| .|. |.+.-.+-.||..|..+.+.+|+
T Consensus       340 ~q~dgs~iidGs~~iRdlNr~l~W~Lp~e~a-~TinGLvle~le~IP~~~~~~~i~~~~  397 (423)
T COG4536         340 PQSDGSFIIDGSANVRDLNRALDWNLPDEDA-RTINGLVLEELEEIPEEGQAVRIGGYR  397 (423)
T ss_pred             ccCCCcEEEeCCCcHHHHHHhcCCCCCCCcc-hhHHHHHHHHHHhCCCCCeEEEEcCEE
Confidence            1   111111111         11366 344 355 88999999999999999998885

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=100.00  E-value=8.4e-57  Score=477.06  Aligned_cols=365  Identities=22%  Similarity=0.355  Sum_probs=294.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCchhhhHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 011147           13 FWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIFL   92 (492)
Q Consensus        13 ~w~~l~iil~LlllsgffSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~A~~il~l~~~~~~lL~tllign~l~~~~l~~~~   92 (492)
                      .++.++++++|+++|||||++|+|++|++|.|+++++++|++    +|..++++.++++.+|+++++|+++++...+++.
T Consensus         3 ~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~----~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~   78 (429)
T COG1253           3 LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNK----RAKAALKLIERLNRYLSTVQLGITLVSLLLGAVG   78 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCH----hHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence            456678888999999999999999999999999999999764    7889999999999999999999999998776654


Q ss_pred             HHHH----HHHH---------HHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh-
Q 011147           93 DALL----PAWA---------SIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLL-  158 (492)
Q Consensus        93 ~~l~----~~~~---------a~li~t~lilifGEiiPK~ia~~~~e~ia~~~a~~v~~~~~ll~Pi~~~is~il~~ll-  158 (492)
                      ...+    ..|.         .++++|+++++|||++||++|++||++++++.++++++++++++|++|++++++++++ 
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~  158 (429)
T COG1253          79 EPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILR  158 (429)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322    1111         1467788999999999999999999999999999999999999999999999887654 


Q ss_pred             --CCC----CccccCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHH
Q 011147          159 --GKR----HSALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMG  232 (492)
Q Consensus       159 --g~~----~~~~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~  232 (492)
                        |.+    +....+.++++ +++    ++.+.|.++++|++||+|+|+|++++|+++||||+++++++.+++++ ++.+
T Consensus       159 l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~  232 (429)
T COG1253         159 LFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIE  232 (429)
T ss_pred             HcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHH
Confidence              443    23356778888 776    46678999999999999999999999999999999999999999998 9999


Q ss_pred             HHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccC
Q 011147          233 LIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFN  312 (492)
Q Consensus       233 ~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp  312 (492)
                      .+.+++|||||||+++.|+++|++|.||++....+.-.            ....+             ..  ..+++++|
T Consensus       233 ~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~------------~~~~~-------------~~--~~~~~~Vp  285 (429)
T COG1253         233 LILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS------------DLDLR-------------VL--VRPPLFVP  285 (429)
T ss_pred             HHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc------------ccchh-------------hc--ccCCeEec
Confidence            99999999999999999999999985544332222210            00000             01  11567789


Q ss_pred             CCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcCccc
Q 011147          313 AYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDY  391 (492)
Q Consensus       313 ~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~~  391 (492)
                      ++++                    +.+++++||+.+.| ++|+      ||||++.|+||+|||+|||+| ||.||+|+-
T Consensus       286 et~~--------------------~~~lL~~~r~~~~hmAiVv------DEyG~~~GlVTleDIiEeIvG-ei~de~d~~  338 (429)
T COG1253         286 ETLS--------------------LSDLLEEFREERTHMAIVV------DEYGGVEGLVTLEDIIEEIVG-EIPDEHDED  338 (429)
T ss_pred             CCCc--------------------HHHHHHHHHHhCCeEEEEE------EcCCCeEEEeEHHHHHHHHhC-CCcCccccc
Confidence            8875                    45679999999999 9999      899999999999999999999 999999862


Q ss_pred             --hhhhhh----hhhc----ccccc---CCCCC-Ccccccc-cccCCCCCCCCCCCCCcccCCCC
Q 011147          392 --VDVHRK----IKIN----MLESQ---KSPSP-GAAFVSR-LRRTPMDSPIPSHHDQTPVSSYN  441 (492)
Q Consensus       392 --~d~~~~----irv~----~~~~~---~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  441 (492)
                        .++.++    +.+.    .....   ..+.+ .+.|.|. ||.....|++|..||.+-...|+
T Consensus       339 ~~~~~~~~~~~~~~v~G~~~l~e~~~~l~~~~~~~~~~~Ti~G~v~~~lg~iP~~g~~~~~~~~~  403 (429)
T COG1253         339 EEEDIIQRDDDGWLVDGRVPLEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPKVGESVVIGGLR  403 (429)
T ss_pred             ccccceEecCCcEEEeccccHHHHHHHhCCCCcccCCcccHHHHHHHHhCcCCCCCCEEEEcCCe
Confidence              233332    1121    11111   11223 4478899 99999999999999999888775

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=100.00  E-value=2.1e-39  Score=347.38  Aligned_cols=333  Identities=44%  Similarity=0.641  Sum_probs=285.4

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCchhh-hHHHHHHHHhchhHHHHHHHHHHH
Q 011147            4 NDVPCCEPMFWVYLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRK-NAEKILPIVKNQHLLLCTLLIGNA   82 (492)
Q Consensus         4 ~~~~~~~~~~w~~l~iil~LlllsgffSg~E~Al~Sl~~~~L~~l~~~g~~~~~~-~A~~il~l~~~~~~lL~tllign~   82 (492)
                      +..|||+..+|++..++++|++|+|+|||.++++|+++...++.+.+.|+.++++ .+++++...++.+++|+|++++|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~   82 (498)
T KOG2118|consen    3 NAIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNS   82 (498)
T ss_pred             ccccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhh
Confidence            5678999999999888899999999999999999999999999999999988876 788889999999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhCCC
Q 011147           83 MAMEA-LPIFLDALLPAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWLLGKR  161 (492)
Q Consensus        83 l~~~~-l~~~~~~l~~~~~a~li~t~lilifGEiiPK~ia~~~~e~ia~~~a~~v~~~~~ll~Pi~~~is~il~~llg~~  161 (492)
                      +++.+ ++++++..++.|.++.++++.++.||||+||++|.+|+..++..+.|++++++++++|+.|+++++ ++.+|..
T Consensus        83 ~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~  161 (498)
T KOG2118|consen   83 IATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLN  161 (498)
T ss_pred             hccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccc
Confidence            99999 999988888889999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             CccccCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCcc
Q 011147          162 HSALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSR  241 (492)
Q Consensus       162 ~~~~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SR  241 (492)
                      .+..+.+++++.++..|++|+.+ |.+.++|..||.+++++.++.++|||||..++++++.+..++++.+..+.++||||
T Consensus       162 ~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sr  240 (498)
T KOG2118|consen  162 LGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSR  240 (498)
T ss_pred             cccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcce
Confidence            88889999999999999998876 99999999999999999999999999999999999999999989999999999999


Q ss_pred             ceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcc
Q 011147          242 VPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVI  321 (492)
Q Consensus       242 iPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~  321 (492)
                      ||||+++..+++|.++....    ++-+...  .+.   ...++.+.             ..+..  .++|..+.     
T Consensus       241 ipv~~~~~~~~i~~~L~~~~----~~~~~~~--~~~---~~~~v~~~-------------~~~~l--~~vp~~~~-----  291 (498)
T KOG2118|consen  241 IPVYEQEPKNKIGGLLVMNL----LRLLQVE--VPL---EPLPVSES-------------ALLRL--PLVPENMP-----  291 (498)
T ss_pred             eeeccCcccchhhHHHHhhh----hhhhccc--ccc---ccccchhh-------------hcccc--ccCCCccc-----
Confidence            99999888888888652221    1111100  000   01111111             00111  12355543     


Q ss_pred             cchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcCccc
Q 011147          322 SSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDY  391 (492)
Q Consensus       322 ~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~~  391 (492)
                                     +...++.|++++.| +.|.       .....+|++|++|+ ||++ .||.||.|.+
T Consensus       292 ---------------~~~~l~~~~~~~~H~~~v~-------~~~~~~~~~~l~~~-~~~~-~ev~de~d~~  338 (498)
T KOG2118|consen  292 ---------------LLDLLNEFQKGKSHMAVVR-------NGHVDIFVLTLEDL-EEVV-KEVEDEEDKE  338 (498)
T ss_pred             ---------------HHHHHHHHhhhhceeEEEe-------cCCcceeeEeccch-hhhc-ceeccccccc
Confidence                           33348999999999 6665       47889999999999 9999 6999999876

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.97  E-value=1.4e-31  Score=270.91  Aligned_cols=228  Identities=20%  Similarity=0.290  Sum_probs=176.1

Q ss_pred             HHhhhhhCCCCccccCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHH
Q 011147          152 KLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTM  231 (492)
Q Consensus       152 ~il~~llg~~~~~~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~  231 (492)
                      .++.+++|.+.   .|++||+.+++.    +.++|.|+++|++||+|+|+|++++|+++|+||.++++++.+++++ +++
T Consensus        21 ~~~~~~~~~~~---~t~eEl~~l~~~----~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~   92 (292)
T PRK15094         21 LLLSQLFHGEP---KNRDELLALIRD----SEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECL   92 (292)
T ss_pred             HHHHHHcCCCC---CCHHHHHHHHHh----HhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHH
Confidence            33444566554   489999999984    5567999999999999999999999999999999999999999998 999


Q ss_pred             HHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhcccccccccccc
Q 011147          232 GLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQF  311 (492)
Q Consensus       232 ~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~v  311 (492)
                      +.+.+++|||||||+++.|+++|+|+.+|+++..    ...       .....+++              +++.  ++++
T Consensus        93 ~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~----~~~-------~~~~~l~~--------------l~r~--~~~V  145 (292)
T PRK15094         93 DVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM----RSD-------AEAFSMDK--------------VLRQ--AVVV  145 (292)
T ss_pred             HHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh----hcc-------CCcCCHHH--------------HcCC--CcCc
Confidence            9999999999999987778999999955543211    100       00011111              2222  2345


Q ss_pred             CCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcCcc
Q 011147          312 NAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDD  390 (492)
Q Consensus       312 p~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~  390 (492)
                      |++++                    +.+++++|++++.| ++|+      |+||+++||||++||+|+|+| ||.||+|.
T Consensus       146 ~e~~~--------------------l~~~L~~m~~~~~~~a~Vv------De~G~viGiVTleDIle~ivG-ei~de~d~  198 (292)
T PRK15094        146 PESKR--------------------VDRMLKEFRSQRYHMAIVI------DEFGGVSGLVTIEDILELIVG-EIEDEYDE  198 (292)
T ss_pred             CCCCc--------------------HHHHHHHHHhcCCEEEEEE------eCCCCEEEEeEHHHHHHHHhC-CCcccccc
Confidence            76654                    56789999999999 9999      899999999999999999999 99999985


Q ss_pred             chh--h----hhhhhhcccccc-------CCCCCCcccccc-cccCCCCCCCCCCCCCcccCCCC
Q 011147          391 YVD--V----HRKIKINMLESQ-------KSPSPGAAFVSR-LRRTPMDSPIPSHHDQTPVSSYN  441 (492)
Q Consensus       391 ~~d--~----~~~irv~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  441 (492)
                      ..+  +    .+.+.|+....-       +..+|...|.|. ||.+..+|+||..||.+.+.+|+
T Consensus       199 ~~~~~i~~~~~~~~~v~G~~~l~dl~~~l~~~l~~~~~~Tl~G~i~~~l~~iP~~Gd~i~~~~~~  263 (292)
T PRK15094        199 EDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQ  263 (292)
T ss_pred             ccccccEEeCCCeEEEEeccCHHHHHHHhCCCCCCCCCccHHHHHHHHhCcCCCCCCEEEECCEE
Confidence            321  2    123444322211       224677789999 99999999999999999887664

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.97  E-value=3.7e-31  Score=252.14  Aligned_cols=230  Identities=19%  Similarity=0.299  Sum_probs=179.2

Q ss_pred             HHHHhhhhhCCCCccccCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHH
Q 011147          150 ISKLLDWLLGKRHSALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEK  229 (492)
Q Consensus       150 is~il~~llg~~~~~~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e  229 (492)
                      +.++++.+|..++.   +++||..+++    +++..+.++++-..|++|++++.+..|+|||+||++|+++..+++++ +
T Consensus        19 fe~L~~~~f~gEpk---nr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~   90 (293)
T COG4535          19 FERLLSQLFHGEPK---NREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E   90 (293)
T ss_pred             HHHHHHHHhcCCCc---CHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence            45555566654443   6899999998    46667999999999999999999999999999999999999999998 9


Q ss_pred             HHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhcccccccccc
Q 011147          230 TMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNE  309 (492)
Q Consensus       230 ~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~  309 (492)
                      .++.+.++.||||||+.++.|+|.||++.+|+    ++.+...       .....++              .+.|+.  +
T Consensus        91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDL----L~~~~~~-------~~~F~i~--------------~lLRPa--v  143 (293)
T COG4535          91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDL----LPFMRSD-------AEPFDIK--------------ELLRPA--V  143 (293)
T ss_pred             HHHHHHHhccccCCcccCCchhhhhhhhHHHH----HHHhcCC-------cccccHH--------------Hhcccc--e
Confidence            99999999999999999999999999986655    4433211       0011222              233443  4


Q ss_pred             ccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcC
Q 011147          310 QFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDET  388 (492)
Q Consensus       310 ~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEt  388 (492)
                      ++|+++.                    +...||.|+.++.| ++|+      ||||+|-|+||.|||+|+|+| ||.||+
T Consensus       144 ~VPESKr--------------------vd~lLkeFR~~RnHMAIVi------DEfGgVsGLVTIEDiLEqIVG-dIEDE~  196 (293)
T COG4535         144 VVPESKR--------------------VDRLLKEFRSQRNHMAIVI------DEFGGVSGLVTIEDILEQIVG-DIEDEY  196 (293)
T ss_pred             ecccchh--------------------HHHHHHHHHhhcCceEEEE------eccCCeeeeEEHHHHHHHHhc-cccccc
Confidence            4688765                    33458999999999 9999      899999999999999999999 999999


Q ss_pred             ccchhhh--h----hhhhcccccc-------CCCCCCcccccc-cccCCCCCCCCCCCCCcccCCCC
Q 011147          389 DDYVDVH--R----KIKINMLESQ-------KSPSPGAAFVSR-LRRTPMDSPIPSHHDQTPVSSYN  441 (492)
Q Consensus       389 D~~~d~~--~----~irv~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  441 (492)
                      |+-.+..  +    .++|.++...       +...+.--+-|+ |.+|.+.|.+|.-|+.+-+..|.
T Consensus       197 Deee~~dI~~ls~~~~~VrALT~IedFNe~F~t~FsDeevDTIGGLVm~afGhLP~RGE~i~i~~~~  263 (293)
T COG4535         197 DEEEDADIRQLSRHTWRVRALTEIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGEKIDIGGYQ  263 (293)
T ss_pred             chhhhhhhHhhcCCceEEEecccHHHHHHHhcCCCChhhhhhhhHHHHHHhccCCCCCCEEEEcceE
Confidence            9764321  1    1344444332       112444455577 99999999999999999998874

>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function

Probab=99.96  E-value=2.3e-27  Score=222.85  Aligned_cols=169  Identities=27%  Similarity=0.489  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCchhhhHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011147           16 YLVICVGLVSFAGLMSGLTLGLMSLSLVDLEVLMRAGQPQDRKNAEKILPIVKNQHLLLCTLLIGNAMAMEALPIFLDAL   95 (492)
Q Consensus        16 ~l~iil~LlllsgffSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~A~~il~l~~~~~~lL~tllign~l~~~~l~~~~~~l   95 (492)
                      ++++++++++++|||||+|+|++++++.+++.++++|++    +++++.++++||+++++|+++||++++.+.+.+...+
T Consensus         2 ~l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~----~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~   77 (183)
T PF01595_consen    2 LLLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDK----RARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVL   77 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457778899999999999999999999999999999874    6889999999999999999999999998876543332


Q ss_pred             ----H----HHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh---hCCCC--
Q 011147           96 ----L----PAWASIVISVTLILAFGEIIPQAVCSRYGLSVGAKLSVLVRLIVIVLFPIAYPISKLLDWL---LGKRH--  162 (492)
Q Consensus        96 ----~----~~~~a~li~t~lilifGEiiPK~ia~~~~e~ia~~~a~~v~~~~~ll~Pi~~~is~il~~l---lg~~~--  162 (492)
                          +    +.+.++++.++++++|||++||++|.+||++++.+.++++++++++++|++|++.++.+++   +|.+.  
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~  157 (183)
T PF01595_consen   78 ASNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEE  157 (183)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence                2    3345667788899999999999999999999999999999999999999999998887755   45543  


Q ss_pred             ccccCHHHHHHHHHhhccccCCCCCCChhH
Q 011147          163 SALLRRAELKTLVDMHGNEAGKGGELTHDE  192 (492)
Q Consensus       163 ~~~~s~eEL~~lv~~~~~e~~~~g~L~~~E  192 (492)
                      +..+++|||+++++.    ++++|.++++|
T Consensus       158 ~~~~s~eel~~lv~~----~~e~G~i~~~E  183 (183)
T PF01595_consen  158 DPAVSEEELRSLVEE----GEEEGVIEEEE  183 (183)
T ss_pred             cCCCCHHHHHHHHHh----HHHCCCCCCCC
Confidence            467999999999994    55679999886

Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.30  E-value=2.3e-11  Score=130.51  Aligned_cols=151  Identities=12%  Similarity=0.221  Sum_probs=112.2

Q ss_pred             cccCHHHHHHHHHhhccccCCCCCCCh-----hHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcC
Q 011147          164 ALLRRAELKTLVDMHGNEAGKGGELTH-----DETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNG  238 (492)
Q Consensus       164 ~~~s~eEL~~lv~~~~~e~~~~g~L~~-----~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~  238 (492)
                      ..+|++|+..++...    +..|.+.+     +|.+++++++++++.     |++  ++++++.++++. ++++.+.+++
T Consensus        43 dtvTe~ema~~ma~~----gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~  110 (450)
T TIGR01302        43 DTVTESRMAIAMARE----GGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG  110 (450)
T ss_pred             CccCHHHHHHHHHhc----CCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence            367999999999853    33688884     899999999988775     543  668899999998 9999999999


Q ss_pred             CccceEEeCCC--CceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCC
Q 011147          239 HSRVPIYVGTP--TNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMN  316 (492)
Q Consensus       239 ~SRiPV~~~~~--d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~  316 (492)
                      ++++||++++.  ++++|+|+.+|+    .....          .+.+++++              ++.....+++++.+
T Consensus       111 ~s~lpVvd~~~~~~~lvGIVt~rDL----~~~~~----------~~~~V~dv--------------m~~~~~~~V~~~~s  162 (450)
T TIGR01302       111 ISGIPVVEDGDMTGKLVGIITKRDI----RFVKD----------KGKPVSEV--------------MTREEVITVPEGID  162 (450)
T ss_pred             CCEEEEEeCCCCCCeEEEEEEHHHH----hhhhc----------CCCCHHHh--------------hCCCCCEEECCCCc
Confidence            99999998754  689999995443    21110          01223332              11011222344432


Q ss_pred             CCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHc
Q 011147          317 SPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELL  380 (492)
Q Consensus       317 ~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLl  380 (492)
                                          +.++++.|++.+.+ ++|+      |++|+++|+||++|+++++-
T Consensus       163 --------------------l~eal~~m~~~~~~~lpVV------De~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       163 --------------------LEEALKVLHEHRIEKLPVV------DKNGELVGLITMKDIVKRRK  201 (450)
T ss_pred             --------------------HHHHHHHHHHcCCCeEEEE------cCCCcEEEEEEhHHhhhccc
Confidence                                56789999999999 9999      89999999999999999974

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.29  E-value=3.1e-11  Score=129.56  Aligned_cols=154  Identities=13%  Similarity=0.203  Sum_probs=111.4

Q ss_pred             ccCHHHHHHHHHhhccccCCC------CCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHH--
Q 011147          165 LLRRAELKTLVDMHGNEAGKG------GELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIIS--  236 (492)
Q Consensus       165 ~~s~eEL~~lv~~~~~e~~~~------g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~--  236 (492)
                      .++.+|+..+++..    .++      +.++++|++.+++++++.+.+|+++|++  ++.+++.+.++. ++++.+.+  
T Consensus        89 ~l~~dd~~~ll~~l----~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~  161 (449)
T TIGR00400        89 EMNLDDVIDLLEEV----PANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA  161 (449)
T ss_pred             cCChhHHHHHHHhC----CHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence            46778888888742    223      4799999999999999999999999994  889999999998 99999975  


Q ss_pred             -cCCccceEE-eCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCC
Q 011147          237 -NGHSRVPIY-VGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAY  314 (492)
Q Consensus       237 -~~~SRiPV~-~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~  314 (492)
                       .+++++++| .++.++++|+|+.+|    ++...           .+.+++++             +. .. ...++.+
T Consensus       162 ~~~~~~~~v~Vvd~~~~l~GvV~l~d----Ll~a~-----------~~~~v~~i-------------m~-~~-~~~v~~~  211 (449)
T TIGR00400       162 KTKEDIYTLYVTNESKHLKGVLSIRD----LILAK-----------PEEILSSI-------------MR-SS-VFSIVGV  211 (449)
T ss_pred             CCccceeEEEEECCCCeEEEEEEHHH----HhcCC-----------CCCcHHHH-------------hC-CC-CeeECCC
Confidence             345556655 344578999998333    22211           01123322             11 11 1112322


Q ss_pred             CCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          315 MNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       315 ~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      .                    ++.++++.|++++.. ++|+      |++|+++|+||.+|+++.+..
T Consensus       212 ~--------------------~~~eal~~m~~~~~~~lpVV------D~~g~lvGiIt~~Dil~~l~~  253 (449)
T TIGR00400       212 N--------------------DQEEVARLIQKYDFLAVPVV------DNEGRLVGIVTVDDIIDVIQS  253 (449)
T ss_pred             C--------------------CHHHHHHHHHHcCCCEEeEE------cCCCeEEEEEEHHHHHHHHHh
Confidence            2                    356789999998888 8899      789999999999999999976

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.25  E-value=2.2e-11  Score=118.74  Aligned_cols=130  Identities=17%  Similarity=0.292  Sum_probs=103.5

Q ss_pred             HhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhh
Q 011147          196 ITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEI  275 (492)
Q Consensus       196 I~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~  275 (492)
                      +.++..+.+.+|+++|++  +..++..|+++. |+.+.+.+++....||.++  |+++|++..+|+++++..+.      
T Consensus       163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~------  231 (294)
T COG2524         163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGN------  231 (294)
T ss_pred             EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCC------
Confidence            355667889999999996  889999999997 9999999999999999975  59999999887776666542      


Q ss_pred             HHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEe
Q 011147          276 AEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKE  354 (492)
Q Consensus       276 ~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv  354 (492)
                           .+.+|+++             |.+....+  -                    +..++.+|++.|.+++.. ++|+
T Consensus       232 -----~~~kV~~~-------------M~k~vitI--~--------------------eDe~i~dAir~M~~~nVGRLlV~  271 (294)
T COG2524         232 -----LDAKVSDY-------------MRKNVITI--N--------------------EDEDIYDAIRLMNKNNVGRLLVT  271 (294)
T ss_pred             -----ccccHHHH-------------hccCCceE--c--------------------CchhHHHHHHHHHhcCcceEEEE
Confidence                 23455555             22221111  1                    123588999999999999 9999


Q ss_pred             cccCCCCCCCcEEEEechhHHHHHHccC
Q 011147          355 ELESLPSVDEEVIGIITLEDVMEELLQE  382 (492)
Q Consensus       355 ~~~~~pde~g~vvGIITlEDViEeLlge  382 (492)
                            |.+|+.+||||..||+.+|.|.
T Consensus       272 ------ds~gkpvGiITrTDIL~~ia~~  293 (294)
T COG2524         272 ------DSNGKPVGIITRTDILTRIAGL  293 (294)
T ss_pred             ------ccCCcEEEEEehHHHHHHhhcc
Confidence                  7899999999999999999884

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.98  E-value=1.2e-09  Score=99.80  Aligned_cols=141  Identities=16%  Similarity=0.257  Sum_probs=93.8

Q ss_pred             CCCCChhH---HHHHhhcccc--cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEcc
Q 011147          185 GGELTHDE---TTIITGALDM--TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGH  259 (492)
Q Consensus       185 ~g~L~~~E---~~iI~~vl~l--~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~  259 (492)
                      .|.+++.=   +.|++...+-  ...+++.+|+  ++++++.+++++. ++++++.++|||.+||.++  |.+||-|...
T Consensus        40 ~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~--spvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE~  114 (187)
T COG3620          40 AGKVDPRLSTVKRILEALEEAEKTRITAKTIMH--SPVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITEN  114 (187)
T ss_pred             cCCCCccHHHHHHHHHHHHHhhcceEeHhhhcc--CCeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecHH
Confidence            36666532   3444444333  4467899998  6999999999998 9999999999999999976  7899999977


Q ss_pred             chHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHH
Q 011147          260 SHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHL  339 (492)
Q Consensus       260 d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~  339 (492)
                      ++.+.++++..    +.    ...+++++             |.+   ++  |.-....     .+|             
T Consensus       115 ~iv~~~le~~e----~i----~~~~vr~v-------------M~e---~f--P~Vs~~~-----~l~-------------  150 (187)
T COG3620         115 DIVRALLEGME----SI----RSLRVREV-------------MGE---PF--PTVSPDE-----SLN-------------  150 (187)
T ss_pred             HHHHHHhcccc----ch----hhhhHHHH-------------hcC---CC--CcCCCCC-----CHH-------------
Confidence            66555554431    11    12234443             211   11  3322211     121             


Q ss_pred             HHHHHhHcCcceEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          340 CLKKWERQDVKISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       340 ~l~~~~~~~~~~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      +..++-+++..++|+       ++|+++||||..||+..+-|
T Consensus       151 vI~~LL~~~~AVlV~-------e~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         151 VISQLLEEHPAVLVV-------ENGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             HHHHHHhhCCeEEEE-------eCCceEEEEeHHHHHHHHhc
Confidence            255655655446676       79999999999999998765

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.97  E-value=3.1e-08  Score=98.56  Aligned_cols=164  Identities=11%  Similarity=0.163  Sum_probs=108.2

Q ss_pred             ccCHHHHHHHHHhhccccCCCCCCChhHHHHHhh-------cccccccccccccccCcceEEEeCCCChHHHHHHHHHHc
Q 011147          165 LLRRAELKTLVDMHGNEAGKGGELTHDETTIITG-------ALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISN  237 (492)
Q Consensus       165 ~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~-------vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~  237 (492)
                      .++.++|...++..    +|.=+++.|+-+-+-+       .-.+.+.+..|||++  +|++++.+++++ ++.+++.++
T Consensus       202 gfs~~Dld~aL~~~----~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H  274 (382)
T COG3448         202 GFSSEDLDAALQRL----GETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH  274 (382)
T ss_pred             CCCHHHHHHHHHhc----CceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence            47889999988843    2345677766433322       224678899999996  899999999999 999999999


Q ss_pred             CCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCC
Q 011147          238 GHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNS  317 (492)
Q Consensus       238 ~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~  317 (492)
                      +..-+||.|+ ..+++|+|..+|+    .|.......+.-..-...+++.+             |+.++... -|+    
T Consensus       275 ~ikaLPV~d~-~~rl~GiVt~~dl----~~~a~~~p~qrlr~~~~~~vk~i-------------mt~~v~tv-~pd----  331 (382)
T COG3448         275 RIKALPVLDE-HRRLVGIVTQRDL----LKHARPSPFQRLRFLRPPTVKGI-------------MTTPVVTV-RPD----  331 (382)
T ss_pred             Cccccccccc-ccceeeeeeHHHH----hhccCcchHHHhhccCCCccccc-------------ccCcceee-cCC----
Confidence            9999999975 4789999995543    33221110000000001111111             11111110 011    


Q ss_pred             CCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          318 PSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       318 ~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                                       .++.+.+..|-.++.| ++|+      |++|+++||||..|+|-.+.-
T Consensus       332 -----------------tpa~~lvp~lad~g~H~lpvl------d~~g~lvGIvsQtDliaal~r  373 (382)
T COG3448         332 -----------------TPAVELVPRLADEGLHALPVL------DAAGKLVGIVSQTDLIAALYR  373 (382)
T ss_pred             -----------------CcHHHHHHHhhcCCcceeeEE------cCCCcEEEEeeHHHHHHHHHH
Confidence                             1244558899999999 9999      899999999999999988753

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.95  E-value=3e-09  Score=107.89  Aligned_cols=130  Identities=22%  Similarity=0.319  Sum_probs=94.0

Q ss_pred             HHHHHhhcc-----cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          192 ETTIITGAL-----DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       192 E~~iI~~vl-----~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      -..||.+++     .-+-.+|+|+|+|..+..++..+++++ ++.++..+.|||||||++. ...++|+|.    |+++.
T Consensus       170 VAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~-~~kvvGvVt----~rDv~  243 (432)
T COG4109         170 VATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNR-SMKVVGVVT----MRDVL  243 (432)
T ss_pred             HHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceecc-cceEEEEEE----ehhhh
Confidence            345555554     456678999999999999999999998 9999999999999999974 467999998    44444


Q ss_pred             HhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhH
Q 011147          267 KCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWER  346 (492)
Q Consensus       267 k~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~  346 (492)
                      ....           +++.+.+             |+++  ++.+-..++                    +..+-+.|--
T Consensus       244 ~~~~-----------~t~ieKV-------------Mtkn--p~tv~~~ts--------------------VAsvaq~Miw  277 (432)
T COG4109         244 DKKP-----------STTIEKV-------------MTKN--PITVRAKTS--------------------VASVAQMMIW  277 (432)
T ss_pred             cCCC-----------CccHHHH-------------hccC--Ceeecccch--------------------HHHHHHHHHh
Confidence            3322           2233333             2221  111122221                    3345677777


Q ss_pred             cCcc-eEEecccCCCCCCCcEEEEechhHHHHHH
Q 011147          347 QDVK-ISKEELESLPSVDEEVIGIITLEDVMEEL  379 (492)
Q Consensus       347 ~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeL  379 (492)
                      .... ++|+      |++..++||||..|+++.|
T Consensus       278 E~iem~PVv------~~n~~llGiitR~dvlk~l  305 (432)
T COG4109         278 EGIEMLPVV------DSNNTLLGIITRQDVLKSL  305 (432)
T ss_pred             ccceeeeEE------cCCceEEEEEEHHHHHHHH
Confidence            7778 8999      8999999999999999988

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.86  E-value=2.8e-08  Score=107.83  Aligned_cols=150  Identities=12%  Similarity=0.183  Sum_probs=108.6

Q ss_pred             cccCHHHHHHHHHhhccccCCCCCCC-----hhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcC
Q 011147          164 ALLRRAELKTLVDMHGNEAGKGGELT-----HDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNG  238 (492)
Q Consensus       164 ~~~s~eEL~~lv~~~~~e~~~~g~L~-----~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~  238 (492)
                      ..+|++||..++..    ++.-|.|.     +++.++++++.++     +++|.  .++.+++.++++. ++++.+.+++
T Consensus        50 ~~vT~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~vk~~-----~dim~--~~~v~i~~~~tv~-ea~~~m~~~~  117 (486)
T PRK05567         50 DTVTEARMAIAMAR----EGGIGVIHKNMSIEEQAEEVRKVKRS-----ESGVV--TDPVTVTPDTTLA-EALALMARYG  117 (486)
T ss_pred             CCcCHHHHHHHHHh----CCCCCEecCCCCHHHHHHHHHHhhhh-----hhccc--CCCeEeCCCCCHH-HHHHHHHHhC
Confidence            36799999999974    33457777     4788999988775     45676  4778899999998 9999999999


Q ss_pred             CccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCC
Q 011147          239 HSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSP  318 (492)
Q Consensus       239 ~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~  318 (492)
                      ++++||+++ .++++|+|+.+|+    .....          ...+++++             +. ......++.+.   
T Consensus       118 ~~~lpVvd~-~g~lvGiVt~~DL----~~~~~----------~~~~V~di-------------m~-~~~~v~v~~~~---  165 (486)
T PRK05567        118 ISGVPVVDE-NGKLVGIITNRDV----RFETD----------LSQPVSEV-------------MT-KERLVTVPEGT---  165 (486)
T ss_pred             CCEEEEEcc-CCEEEEEEEHHHh----hhccc----------CCCcHHHH-------------cC-CCCCEEECCCC---
Confidence            999999974 5789999995443    11110          01122222             11 00111234433   


Q ss_pred             CcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHc
Q 011147          319 SVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELL  380 (492)
Q Consensus       319 ~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLl  380 (492)
                                       ++.++++.|.+.+.+ ++|+      |++|+++|+||.+|+++.+.
T Consensus       166 -----------------sl~eal~~m~~~~~~~lpVV------De~g~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        166 -----------------TLEEALELLHEHRIEKLPVV------DDNGRLKGLITVKDIEKAEE  205 (486)
T ss_pred             -----------------CHHHHHHHHHHcCCCEEEEE------cCCCcEEEEEEhHHhhhhhh
Confidence                             256779999999998 9999      79999999999999998874

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.76  E-value=8e-08  Score=83.12  Aligned_cols=117  Identities=12%  Similarity=0.162  Sum_probs=75.2

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++.+++.++++. ++.+.+.+++++++||+++ .++++|+++.+|+++...+.....   .     ...+.+.  +    
T Consensus         2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~---~-----~~~~~~~--~----   65 (120)
T cd04641           2 NIATARPDTPLI-DVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYNN---L-----DLTVGEA--L----   65 (120)
T ss_pred             CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCcccc---c-----cCCHHHH--H----
Confidence            567899999998 9999999999999999975 478999999766554322110000   0     0000000  0    


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                      ... ..+..  ....++.+.                    ++.++++.|.+.+.+ ++|+      |++|+++|+||.+|
T Consensus        66 ~~~-~~~~~--~~~~v~~~~--------------------~l~~~~~~m~~~~~~~l~Vv------d~~~~~~Givt~~d  116 (120)
T cd04641          66 ERR-SQDFE--GVRTCSPDD--------------------CLRTIFDLIVKARVHRLVVV------DENKRVEGIISLSD  116 (120)
T ss_pred             hhc-ccCCC--CCeEEcCCC--------------------cHHHHHHHHHhcCccEEEEE------CCCCCEEEEEEHHH
Confidence            000 00000  001122222                    366789999999999 9999      67799999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       117 i~~  119 (120)
T cd04641         117 ILQ  119 (120)
T ss_pred             hhc
Confidence            975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.76  E-value=7.2e-08  Score=81.55  Aligned_cols=110  Identities=8%  Similarity=0.160  Sum_probs=73.4

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++.+++.+.++. ++++.+.+.+++++||++++ ++++|+++.+++++.+.+.....        ...++.++       
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~--------~~~~~~~~-------   64 (113)
T cd04623           2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASA--------LDTPVSEI-------   64 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCc--------cccCHHHh-------
Confidence            467789999998 99999999999999999754 78999999666543332110000        01112111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+  ...+++.+.                    ++.++++.|.+.+.+ ++|+      ++ |+++|+||.+|
T Consensus        65 ------~~~--~~~~v~~~~--------------------~~~~~l~~~~~~~~~~~~Vv------~~-~~~~Gvit~~d  109 (113)
T cd04623          65 ------MTR--NVITVTPDD--------------------TVDEAMALMTERRFRHLPVV------DG-GKLVGIVSIGD  109 (113)
T ss_pred             ------cCC--CcEEECCCC--------------------cHHHHHHHHHHcCCCEeEEE------eC-CEEEEEEEHHH
Confidence                  111  111123332                    255678999998887 8888      44 99999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       110 i~~  112 (113)
T cd04623         110 VVK  112 (113)
T ss_pred             hhc
Confidence            975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.69  E-value=1.8e-07  Score=80.02  Aligned_cols=111  Identities=18%  Similarity=0.294  Sum_probs=75.6

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.++++. ++++.+.+++++.+||++++.++++|+++.+|+++.+.+...+.        .+.++.++       
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~--------~~~~v~~~-------   65 (114)
T cd04630           2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDP--------DRVNVYEI-------   65 (114)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCC--------CccCHHHH-------
Confidence            567889999998 99999998999999999753368999999776654443321100        01122222       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+  ....++.+.                    ++.++++.|.+.+.+ ++|+      |+ |+++|+||+.|
T Consensus        66 ------~~~--~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------d~-~~~~Gvi~~~d  110 (114)
T cd04630          66 ------MTK--PLISVSPDM--------------------DIKYCARLMERTNIRRAPVV------EN-NELIGIISLTD  110 (114)
T ss_pred             ------hcC--CCeeECCCC--------------------CHHHHHHHHHHcCCCEeeEe------eC-CEEEEEEEHHH
Confidence                  111  111123332                    256789999998888 8888      55 99999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      ++.
T Consensus       111 l~~  113 (114)
T cd04630         111 IFL  113 (114)
T ss_pred             hhc
Confidence            874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.68  E-value=1.3e-07  Score=80.10  Aligned_cols=110  Identities=25%  Similarity=0.384  Sum_probs=75.4

Q ss_pred             cceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccch
Q 011147          215 SKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSN  294 (492)
Q Consensus       215 ~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~  294 (492)
                      +++..++.++++. ++.+.+.+.+++.+||.+++.+.++|++..+++++.......           ..++.        
T Consensus         1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~-----------~~~~~--------   60 (111)
T cd04590           1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE-----------DLDLR--------   60 (111)
T ss_pred             CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC-----------cCCHH--------
Confidence            3678899999998 999999998999999997543689999995554332211100           00111        


Q ss_pred             hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147          295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE  373 (492)
Q Consensus       295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE  373 (492)
                            .+.+..  ..++...                    ++.++++.|.+.+.+ ++|+      |++|+++|+||..
T Consensus        61 ------~~~~~~--~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~~~~~Gvit~~  106 (111)
T cd04590          61 ------DLLRPP--LFVPEST--------------------PLDDLLEEMRKERSHMAIVV------DEYGGTAGLVTLE  106 (111)
T ss_pred             ------HHhcCC--eecCCCC--------------------cHHHHHHHHHhcCCcEEEEE------ECCCCEEEEeEHH
Confidence                  111111  1112221                    366789999999888 8888      6789999999999


Q ss_pred             HHHHH
Q 011147          374 DVMEE  378 (492)
Q Consensus       374 DViEe  378 (492)
                      |+++|
T Consensus       107 di~~~  111 (111)
T cd04590         107 DILEE  111 (111)
T ss_pred             HhhcC
Confidence            99875

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.67  E-value=1.5e-07  Score=79.94  Aligned_cols=109  Identities=12%  Similarity=0.212  Sum_probs=73.1

Q ss_pred             eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhh
Q 011147          217 IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLK  296 (492)
Q Consensus       217 v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~  296 (492)
                      +..++.++++. ++.+.+.+.+++++||++++ +.++|+++.+++++.+.....          .+.++.++        
T Consensus         3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~----------~~~~v~~~--------   62 (112)
T cd04624           3 VVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGID----------LDTPVSEI--------   62 (112)
T ss_pred             CeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCC----------CccCHHHh--------
Confidence            45688999998 99999999999999999754 789999996665433322110          01112111        


Q ss_pred             hhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHH
Q 011147          297 QRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDV  375 (492)
Q Consensus       297 ~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDV  375 (492)
                           +.+.  ...++...                    ++.++++.|.+.+.. ++|+      +++|+++|+||.+|+
T Consensus        63 -----~~~~--~~~v~~~~--------------------~~~~~~~~~~~~~~~~~~Vv------~~~g~~~Gilt~~dl  109 (112)
T cd04624          63 -----MTRD--LVTVDPDE--------------------PVAEAAKLMRKNNIRHHLVV------DKGGELVGVISIRDL  109 (112)
T ss_pred             -----ccCC--CEEECCCC--------------------cHHHHHHHHHHcCccEEEEE------cCCCcEEEEEEHHHh
Confidence                 1111  11122222                    245678999887777 8888      678999999999999


Q ss_pred             HHH
Q 011147          376 MEE  378 (492)
Q Consensus       376 iEe  378 (492)
                      ++|
T Consensus       110 ~~~  112 (112)
T cd04624         110 VRE  112 (112)
T ss_pred             ccC
Confidence            875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.66  E-value=2.6e-07  Score=80.28  Aligned_cols=118  Identities=14%  Similarity=0.157  Sum_probs=74.2

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.++++. ++++.+.+++++++||++++.++++|+++.+|+++.+.+.....           ...+. .. + .
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~-----------~~~~~-~~-~-~   66 (123)
T cd04627           2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSF-----------PGLDP-LY-P-I   66 (123)
T ss_pred             CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhc-----------cchhh-hh-h-h
Confidence            456788999998 99999998899999999754368999999776554332221000           00000 00 0 0


Q ss_pred             hhhh-ccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147          296 KQRQ-GELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE  373 (492)
Q Consensus       296 ~~~~-~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE  373 (492)
                      .... ..+.+.  ...++..                    .++.++++.|.+.+.+ ++|+      |++|+++|+||+.
T Consensus        67 ~~~~~~~~~~~--~~~v~~~--------------------~~l~~a~~~m~~~~~~~lpVv------d~~~~~vGiit~~  118 (123)
T cd04627          67 PLRDLTIGTSD--VISINGD--------------------QPLIDALHLMHNEGISSVAVV------DNQGNLIGNISVT  118 (123)
T ss_pred             hhhhcccCcCC--ceEeCCC--------------------CCHHHHHHHHHHcCCceEEEE------CCCCcEEEEEeHH
Confidence            0000 000000  1111222                    2366789999999998 9999      7789999999999


Q ss_pred             HHH
Q 011147          374 DVM  376 (492)
Q Consensus       374 DVi  376 (492)
                      |+-
T Consensus       119 di~  121 (123)
T cd04627         119 DVR  121 (123)
T ss_pred             Hhh
Confidence            974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.65  E-value=1.2e-07  Score=97.33  Aligned_cols=123  Identities=11%  Similarity=0.086  Sum_probs=85.1

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhcc
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSK  282 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~  282 (492)
                      ...+|+|+|++..++.+++.++++. ++.+.+.++++..+||.++ .+.++|+|..+|+.+...+...         ..+
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~~~---------~~~  268 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMGID---------LRQ  268 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcCCC---------ccc
Confidence            7778999999755888999999998 9999998888877777764 4789999997765432211100         011


Q ss_pred             CCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCC
Q 011147          283 APMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPS  361 (492)
Q Consensus       283 ~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pd  361 (492)
                      .+++++             +.+.  +..+....                    ++.++++.|.+++.+ ++|+       
T Consensus       269 ~~v~~i-------------m~~~--~~~v~~~~--------------------~l~~a~~~m~~~~~~~lpVv-------  306 (326)
T PRK10892        269 ASIADV-------------MTPG--GIRVRPGI--------------------LAVDALNLMQSRHITSVLVA-------  306 (326)
T ss_pred             CCHHHh-------------cCCC--CEEECCCC--------------------CHHHHHHHHHHCCCcEEEEe-------
Confidence            223333             1111  11122222                    366789999999998 8887       


Q ss_pred             CCCcEEEEechhHHHHH
Q 011147          362 VDEEVIGIITLEDVMEE  378 (492)
Q Consensus       362 e~g~vvGIITlEDViEe  378 (492)
                      ++|+++||||..|++..
T Consensus       307 ~~~~lvGiit~~dil~~  323 (326)
T PRK10892        307 DGDHLLGVLHMHDLLRA  323 (326)
T ss_pred             eCCEEEEEEEhHHhHhc
Confidence            46899999999999863

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.65  E-value=1.2e-07  Score=80.17  Aligned_cols=94  Identities=11%  Similarity=0.163  Sum_probs=71.1

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++.+++.++++. ++.+.+.+++++.+||.+++.++++|+++.+|+.    +...                 +       
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~----~~~~-----------------~-------   52 (98)
T cd04618           2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFI----LILR-----------------L-------   52 (98)
T ss_pred             eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHh----hhee-----------------e-------
Confidence            578899999998 9999999999999999985446899999844321    1110                 0       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC-CcEEEEechh
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD-EEVIGIITLE  373 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~-g~vvGIITlE  373 (492)
                                   ..+..+.                    ++.+|++.|.+++.+ ++|+      |++ |+++|+||..
T Consensus        53 -------------~~v~~~~--------------------~l~~a~~~m~~~~~~~lpVv------d~~~~~~~giit~~   93 (98)
T cd04618          53 -------------VSIHPER--------------------SLFDAALLLLKNKIHRLPVI------DPSTGTGLYILTSR   93 (98)
T ss_pred             -------------EEeCCCC--------------------cHHHHHHHHHHCCCCEeeEE------ECCCCCceEEeehh
Confidence                         0012221                    366789999999999 9999      566 8999999999


Q ss_pred             HHHH
Q 011147          374 DVME  377 (492)
Q Consensus       374 DViE  377 (492)
                      |++.
T Consensus        94 d~~~   97 (98)
T cd04618          94 RILK   97 (98)
T ss_pred             hhhc
Confidence            9863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.63  E-value=2.3e-07  Score=79.37  Aligned_cols=109  Identities=12%  Similarity=0.137  Sum_probs=72.2

Q ss_pred             eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhh
Q 011147          217 IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLK  296 (492)
Q Consensus       217 v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~  296 (492)
                      +..++.++++. ++.+.+.+.+++++||+++ .++++|++..+|+...+.+....         .+.++.++        
T Consensus         3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~---------~~~~~~~~--------   63 (115)
T cd04593           3 PPVLSATTPLR-EAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEAG---------EPSAVDEV--------   63 (115)
T ss_pred             CcEeCCCCCHH-HHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhccccc---------ccccHHHh--------
Confidence            35678899998 9999999999999999975 37899999855443222111000         00111111        


Q ss_pred             hhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC--CcEEEEechh
Q 011147          297 QRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD--EEVIGIITLE  373 (492)
Q Consensus       297 ~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~--g~vvGIITlE  373 (492)
                           +.+  ....++...                    ++.++++.|.+.+.+ ++|+      |++  |+++|+||.+
T Consensus        64 -----~~~--~~~~v~~~~--------------------~l~~~l~~~~~~~~~~~~Vv------d~~~~~~~~Gvit~~  110 (115)
T cd04593          64 -----ATP--PLLTVHPDE--------------------PLAHALDRMASRGLRQLPVV------DRGNPGQVLGLLTRE  110 (115)
T ss_pred             -----ccC--CceEECCCC--------------------CHHHHHHHHHHcCCceeeEE------eCCCCCeEEEEEEhH
Confidence                 111  111123332                    256789999999998 9998      566  8999999999


Q ss_pred             HHHH
Q 011147          374 DVME  377 (492)
Q Consensus       374 DViE  377 (492)
                      |+++
T Consensus       111 di~~  114 (115)
T cd04593         111 NVLL  114 (115)
T ss_pred             Hhhc
Confidence            9986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.62  E-value=1.2e-07  Score=97.12  Aligned_cols=121  Identities=11%  Similarity=0.115  Sum_probs=84.5

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccC
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKA  283 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~  283 (492)
                      ..+|+++|+...++.+++.++++. ++.+.+.+++.+.+||+++ .++++|+|..+|+.+.+....          ..+.
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~~----------~~~~  263 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGGG----------ALTT  263 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCCC----------CcCC
Confidence            478999998643488899999998 9999998888899999975 478999998555432221110          0112


Q ss_pred             CCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCC
Q 011147          284 PMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSV  362 (492)
Q Consensus       284 ~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde  362 (492)
                      ++.++             +.+.  +..++...                    ++.++++.|.+.+.. ++|+      |+
T Consensus       264 ~v~~i-------------m~~~--~~~v~~~~--------------------~l~~a~~~m~~~~~~~lpVv------d~  302 (321)
T PRK11543        264 PVNEA-------------MTRG--GTTLQAQS--------------------RAIDAKEILMKRKITAAPVV------DE  302 (321)
T ss_pred             cHHHh-------------cCCC--CEEECCCC--------------------CHHHHHHHHHHcCCCEEEEE------cC
Confidence            22222             1111  11122222                    366789999999998 9999      67


Q ss_pred             CCcEEEEechhHHHH
Q 011147          363 DEEVIGIITLEDVME  377 (492)
Q Consensus       363 ~g~vvGIITlEDViE  377 (492)
                      +|+++|+||..|+++
T Consensus       303 ~~~lvGvIt~~di~~  317 (321)
T PRK11543        303 NGKLTGAINLQDFYQ  317 (321)
T ss_pred             CCeEEEEEEHHHHHh
Confidence            889999999999986

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.62  E-value=1.1e-07  Score=105.15  Aligned_cols=126  Identities=5%  Similarity=0.062  Sum_probs=86.3

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS  281 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~  281 (492)
                      ++..+|+|+|++  +...++.++++. |+.+.+.+++++.+||.|+ .++++|+|+.+|..+.+.+...         ..
T Consensus       444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~~---------~~  510 (574)
T PRK01862        444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKRD---------TT  510 (574)
T ss_pred             HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhcccc---------cc
Confidence            667899999986  456789999998 9999999999999999975 3689999985554332211100         00


Q ss_pred             cCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCC
Q 011147          282 KAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLP  360 (492)
Q Consensus       282 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~p  360 (492)
                      +.+++++             +.+....  ++.++                    ++.++++.|++.+.+ ++|+      
T Consensus       511 ~~~v~di-------------m~~~~~~--v~~d~--------------------~L~~al~~m~~~~~~~lpVV------  549 (574)
T PRK01862        511 DKTAADY-------------AHTPFPL--LTPDM--------------------PLGDALEHFMAFQGERLPVV------  549 (574)
T ss_pred             cchHHHh-------------ccCCCee--ECCCC--------------------CHHHHHHHHHhcCCCeeeeE------
Confidence            1122222             1111111  12221                    366789999999998 9999      


Q ss_pred             CCC--CcEEEEechhHHHHHHcc
Q 011147          361 SVD--EEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       361 de~--g~vvGIITlEDViEeLlg  381 (492)
                      |++  ++++|+||..|+++.+..
T Consensus       550 d~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        550 ESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             eCCCCCeEEEEEEHHHHHHHHHh
Confidence            455  579999999999999854

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.60  E-value=3.6e-07  Score=77.41  Aligned_cols=108  Identities=15%  Similarity=0.284  Sum_probs=73.0

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      +...++.++++. ++.+.+.+.+++++||+++ .+.++|+++..++.+.+.....           +.++.++       
T Consensus         2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~-----------~~~v~~~-------   61 (111)
T cd04639           2 HFETLSPADTLD-DAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGGP-----------DAPVRGV-------   61 (111)
T ss_pred             CceEcCCCCcHH-HHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcCC-----------CCcHHHH-------
Confidence            456788999998 9999988889999999975 3689999986554332221110           1122222       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+.  ...++...                    ++.++++.|++.+.. ++|+      |++|+++|+||..|
T Consensus        62 ------~~~~--~~~i~~~~--------------------~~~~~~~~~~~~~~~~~~Vv------~~~~~~~G~it~~d  107 (111)
T cd04639          62 ------MRRD--FPTVSPSA--------------------TLDAVLRLMQQGGAPAVPVV------DGSGRLVGLVTLEN  107 (111)
T ss_pred             ------hcCC--CcEECCCC--------------------cHHHHHHHHHhcCCceeeEE------cCCCCEEEEEEHHH
Confidence                  1111  11123332                    256778999998878 8888      67799999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +.|
T Consensus       108 l~~  110 (111)
T cd04639         108 VGE  110 (111)
T ss_pred             hhc
Confidence            976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.60  E-value=3e-07  Score=79.24  Aligned_cols=119  Identities=13%  Similarity=0.205  Sum_probs=73.2

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++.+++.++++. ++.+.+.+.+++++||++++ +.++|+++..++.+....................++.++       
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~-------   72 (122)
T cd04803           2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEV-------   72 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHh-------
Confidence            456789999998 99999999999999999753 789999985554322211100000000000000111111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+.  ...++.+.                    .+.++++.|++.+.+ ++|+      |++|+++|+||..|
T Consensus        73 ------~~~~--~~~v~~~~--------------------~~~~~~~~~~~~~~~~~~Vv------~~~~~~~Gvit~~d  118 (122)
T cd04803          73 ------MKTD--VLTVTPDT--------------------PLREAAEIMVENKIGCLPVV------DDKGTLVGIITRSD  118 (122)
T ss_pred             ------hCCC--CeEeCCCC--------------------cHHHHHHHHHHcCCCeEEEE------cCCCCEEEEEEHHH
Confidence                  1111  11123332                    256779999998888 8898      67789999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       119 l~~  121 (122)
T cd04803         119 FLR  121 (122)
T ss_pred             hhc
Confidence            975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.60  E-value=5.1e-07  Score=76.30  Aligned_cols=106  Identities=17%  Similarity=0.316  Sum_probs=72.8

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++.+++.++++. ++++.+.+++++++||.+++ ++++|+++.++++    +.+.+.         ..++.++       
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~----~~~~~~---------~~~~~~~-------   60 (110)
T cd04605           3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDIS----KAVARD---------KKSVEDI-------   60 (110)
T ss_pred             CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHH----HHHhhC---------ccCHHHh-------
Confidence            567789999998 99999999999999999753 7899999855433    222111         0011111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+.  ...++..+                    ++.++++.|++.+.+ ++|+      +++|+++|+||++|
T Consensus        61 ------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~~~~~G~v~~~d  106 (110)
T cd04605          61 ------MTRN--VITATPDE--------------------PIDVAARKMERHNISALPVV------DAENRVIGIITSED  106 (110)
T ss_pred             ------cCCC--CeEECCCC--------------------cHHHHHHHHHHhCCCEEeEE------CCCCcEEEEEEHHH
Confidence                  1011  11123222                    266789999999888 8888      68899999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       107 i~~  109 (110)
T cd04605         107 ISK  109 (110)
T ss_pred             hhh
Confidence            975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.59  E-value=3.1e-07  Score=79.44  Aligned_cols=120  Identities=13%  Similarity=0.220  Sum_probs=75.2

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHH--hhhccCCCcccccccc
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAE--MEKSKAPMQHDININS  293 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~--~~~~~~~v~~v~~~~~  293 (492)
                      ++..++.++++. ++++.+.+.+++.+||++++.+.++|+|+..+++..+.+..........  ......++.++     
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   75 (125)
T cd04631           2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSI-----   75 (125)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHH-----
Confidence            456789999998 9999999999999999986447899999966654333211100000000  00000011111     


Q ss_pred             hhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEech
Q 011147          294 NLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITL  372 (492)
Q Consensus       294 ~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITl  372 (492)
                              +.+.  ...++.+.                    ++.++++.|++.+.+ ++|+      |++|+++|+||.
T Consensus        76 --------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~V~------~~~~~~~Gvit~  119 (125)
T cd04631          76 --------MTRN--VITITPDD--------------------SIKDAAELMLEKRVGGLPVV------DDDGKLVGIVTE  119 (125)
T ss_pred             --------hcCC--ceEeCCCC--------------------cHHHHHHHHHHcCCceEEEE------cCCCcEEEEEEH
Confidence                    1111  11123332                    255678999999988 8888      677999999999


Q ss_pred             hHHHH
Q 011147          373 EDVME  377 (492)
Q Consensus       373 EDViE  377 (492)
                      .|+++
T Consensus       120 ~di~~  124 (125)
T cd04631         120 RDLLK  124 (125)
T ss_pred             HHhhc
Confidence            99975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.59  E-value=4.4e-07  Score=77.83  Aligned_cols=111  Identities=14%  Similarity=0.262  Sum_probs=74.8

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.++++. ++.+.+.++++..+||.++ .++++|++..+|+.+.+.+... .       ....++.++       
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~-~-------~~~~~v~~~-------   64 (114)
T cd04619           2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGG-P-------GCTAPVENV-------   64 (114)
T ss_pred             ceEEECCCCcHH-HHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCC-C-------cccCCHHHH-------
Confidence            466789999998 9999999999999999975 3789999996665433221000 0       011222222       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+....  ++...                    ++.++++.|.+.+.+ ++|+      |++|+++|+||..|
T Consensus        65 ------~~~~~~~--v~~~~--------------------~l~~a~~~m~~~~~~~lpVv------d~~~~~~Gvi~~~d  110 (114)
T cd04619          65 ------MTRAVVS--CRPGD--------------------LLHDVWQVMKQRGLKNIPVV------DENARPLGVLNARD  110 (114)
T ss_pred             ------hcCCCee--ECCCC--------------------CHHHHHHHHHHcCCCeEEEE------CCCCcEEEEEEhHh
Confidence                  1111101  12221                    266789999999998 9999      77899999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       111 l~~  113 (114)
T cd04619         111 ALK  113 (114)
T ss_pred             hcc
Confidence            975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.59  E-value=4.2e-07  Score=79.38  Aligned_cols=122  Identities=18%  Similarity=0.192  Sum_probs=74.2

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++.+++.+.++. ++.+.+.+++++.+||++++ +.++|+++..|+++......     ..    ...+......+  ..
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~-----~~----~~~~~~~~~~~--~~   68 (126)
T cd04642           2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPD-----DL----LLYRTITFKEL--SE   68 (126)
T ss_pred             CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcc-----hh----hcccchhhhhh--hh
Confidence            677899999998 99999989999999999754 78999999665433221100     00    00000000000  00


Q ss_pred             hhh-hccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147          296 KQR-QGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE  373 (492)
Q Consensus       296 ~~~-~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE  373 (492)
                      ... ..... ......++.+                    .++.++++.|.+.+.+ ++|+      |++|+++|+||..
T Consensus        69 ~~~~~~~~~-~~~~~~v~~~--------------------~~l~~a~~~~~~~~~~~l~Vv------d~~~~~~Giit~~  121 (126)
T cd04642          69 KFTDSDGVK-SRPLITCTPS--------------------STLKEVITKLVANKVHRVWVV------DEEGKPIGVITLT  121 (126)
T ss_pred             hcccccccc-cCCCeEECCC--------------------CcHHHHHHHHHHhCCcEEEEE------CCCCCEEEEEEHH
Confidence            000 00000 0011112222                    2366789999999888 9999      7789999999999


Q ss_pred             HHHH
Q 011147          374 DVME  377 (492)
Q Consensus       374 DViE  377 (492)
                      |+++
T Consensus       122 dil~  125 (126)
T cd04642         122 DIIS  125 (126)
T ss_pred             HHhc
Confidence            9974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.57  E-value=5e-07  Score=76.48  Aligned_cols=105  Identities=13%  Similarity=0.207  Sum_probs=73.9

Q ss_pred             cceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccch
Q 011147          215 SKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSN  294 (492)
Q Consensus       215 ~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~  294 (492)
                      .++.+++.++++. ++.+.+.+++++++||+++ .+.++|+++.++++    ....           +.++.++      
T Consensus         2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~----~~~~-----------~~~v~~~------   58 (108)
T cd04596           2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVA----GKDP-----------DTTIEKV------   58 (108)
T ss_pred             CccEEeCCCCCHH-HHHHHHHHcCCCceeEECC-CCeEEEEecHHHHh----cccc-----------cccHHHH------
Confidence            4678899999998 9999999999999999974 47899999844432    1110           1112222      


Q ss_pred             hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147          295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE  373 (492)
Q Consensus       295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE  373 (492)
                             +.+  ...+++...                    ++.++++.|.+.+.+ ++|+      |++|+++|+||..
T Consensus        59 -------~~~--~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~~~~~G~it~~  103 (108)
T cd04596          59 -------MTK--NPITVNPKT--------------------SVASVAHMMIWEGIEMLPVV------DDNKKLLGIISRQ  103 (108)
T ss_pred             -------hcC--CCeEECCCC--------------------CHHHHHHHHHHcCCCeeeEE------cCCCCEEEEEEHH
Confidence                   100  111123332                    256779999998888 8999      7889999999999


Q ss_pred             HHHH
Q 011147          374 DVME  377 (492)
Q Consensus       374 DViE  377 (492)
                      |+++
T Consensus       104 di~~  107 (108)
T cd04596         104 DVLK  107 (108)
T ss_pred             Hhhc
Confidence            9986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.56  E-value=4.9e-07  Score=78.11  Aligned_cols=117  Identities=9%  Similarity=0.148  Sum_probs=73.7

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhh---hccCCCccccccc
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEME---KSKAPMQHDININ  292 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~---~~~~~v~~v~~~~  292 (492)
                      ++.+++.++++. ++.+.+.+.+++++||++++ +.++|+|..++++..+.......  .....   ....++.++    
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~i~~~----   74 (124)
T cd04600           3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRP--LRGRLRGRDKPETVGDI----   74 (124)
T ss_pred             CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccch--hhhhhhcccccccHHHh----
Confidence            567789999998 99999999999999999754 78999999555432221100000  00000   000011111    


Q ss_pred             chhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEec
Q 011147          293 SNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIIT  371 (492)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIIT  371 (492)
                               +.+.  ...++.+.                    ++.++++.|.+.+.+ ++|+      |++|+++|+||
T Consensus        75 ---------~~~~--~~~~~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~g~~~Gvit  117 (124)
T cd04600          75 ---------MSPP--VVTVRPDT--------------------PIAELVPLLADGGHHHVPVV------DEDRRLVGIVT  117 (124)
T ss_pred             ---------ccCC--CeeeCCCC--------------------cHHHHHHHHHhcCCCceeEE------cCCCCEEEEEE
Confidence                     1111  11123222                    366789999999888 9999      67899999999


Q ss_pred             hhHHHH
Q 011147          372 LEDVME  377 (492)
Q Consensus       372 lEDViE  377 (492)
                      ..|++.
T Consensus       118 ~~di~~  123 (124)
T cd04600         118 QTDLIA  123 (124)
T ss_pred             hHHhhc
Confidence            999874

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.55  E-value=2.8e-07  Score=98.85  Aligned_cols=126  Identities=13%  Similarity=0.191  Sum_probs=83.9

Q ss_pred             HhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhh
Q 011147          196 ITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEI  275 (492)
Q Consensus       196 I~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~  275 (492)
                      ..++  |+..+|+++|.+  ++.++..++++. ++++.+.+.+++++||+++ .++++|+|+.+|+++.+.+...     
T Consensus       328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~-----  396 (454)
T TIGR01137       328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKA-----  396 (454)
T ss_pred             HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCC-----
Confidence            4444  788999999985  678899999998 9999999999999999975 3689999996655433322100     


Q ss_pred             HHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcceEEec
Q 011147          276 AEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEE  355 (492)
Q Consensus       276 ~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~~lVv~  355 (492)
                          ..+.++.++             +.+.  ...++...                    ++.++++.|++.  +.++| 
T Consensus       397 ----~~~~~v~~i-------------m~~~--~~~v~~~~--------------------~l~~a~~~~~~~--~~~vV-  434 (454)
T TIGR01137       397 ----NPDDAVSKV-------------MSKK--FIQIGEGE--------------------KLSDLSKFLEKN--SSAIV-  434 (454)
T ss_pred             ----CcCCCHHHh-------------cCCC--CeEECCcC--------------------cHHHHHHHHHHC--CeeEE-
Confidence                001122222             1111  11123332                    255678888764  33334 


Q ss_pred             ccCCCCCCCcEEEEechhHHHHHH
Q 011147          356 LESLPSVDEEVIGIITLEDVMEEL  379 (492)
Q Consensus       356 ~~~~pde~g~vvGIITlEDViEeL  379 (492)
                           +++|+++|+||+.|+++.|
T Consensus       435 -----~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       435 -----TEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             -----EECCEEEEEEEHHHHHHhh
Confidence                 3578999999999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.55  E-value=3.7e-07  Score=77.96  Aligned_cols=110  Identities=15%  Similarity=0.123  Sum_probs=72.0

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcC-CccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccch
Q 011147          216 KIFSLDINSRLDEKTMGLIISNG-HSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSN  294 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~-~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~  294 (492)
                      ++.+++.++++. ++.+.+.+++ ++++||+++ .++++|+++.+|+++...+.           ..+.++.++      
T Consensus         2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~-----------~~~~~v~~~------   62 (114)
T cd04801           2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQ-----------WAQTTVIQV------   62 (114)
T ss_pred             CcceeCCCCCHH-HHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhh-----------ccccchhhh------
Confidence            456789999998 8998887664 889999974 47899999966543322100           001122222      


Q ss_pred             hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147          295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE  373 (492)
Q Consensus       295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE  373 (492)
                             +........+...                    .++.++++.|++.+.+ ++|+      |++|+++|+||..
T Consensus        63 -------~~~~~~~~~v~~~--------------------~~l~~a~~~~~~~~~~~l~Vv------~~~~~~~Gvl~~~  109 (114)
T cd04801          63 -------MTPAAKLVTVLSE--------------------ESLAEVLKLLEEQGLDELAVV------EDSGQVIGLITEA  109 (114)
T ss_pred             -------hcccccceEECCC--------------------CcHHHHHHHHHHCCCCeeEEE------cCCCcEEEEEecc
Confidence                   1000000011222                    2367789999999998 9999      6779999999999


Q ss_pred             HHHH
Q 011147          374 DVME  377 (492)
Q Consensus       374 DViE  377 (492)
                      |+++
T Consensus       110 di~~  113 (114)
T cd04801         110 DLLR  113 (114)
T ss_pred             ceec
Confidence            9875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.54  E-value=7e-07  Score=77.04  Aligned_cols=118  Identities=10%  Similarity=0.208  Sum_probs=75.9

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHh-hhccCCCcccccccch
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEM-EKSKAPMQHDININSN  294 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~-~~~~~~v~~v~~~~~~  294 (492)
                      ++..++.++++. ++.+.+.+.+++++||+++  ++++|+++.+++++.+.+........... .....++.++      
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   72 (122)
T cd04637           2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQI------   72 (122)
T ss_pred             CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHh------
Confidence            567789999998 9999999999999999985  78999999777655443221100000000 0000011111      


Q ss_pred             hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147          295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE  373 (492)
Q Consensus       295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE  373 (492)
                             +.+  ....++.+.                    ++.++++.|.+.+.. ++|+      |++|+++|++|+.
T Consensus        73 -------~~~--~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~vv------~~~~~~~Gvit~~  117 (122)
T cd04637          73 -------MTR--DPITVSPDT--------------------PVDEASKLLLENSISCLPVV------DENGQLIGIITWK  117 (122)
T ss_pred             -------hcC--CCeeeCCCC--------------------cHHHHHHHHHHcCCCeEeEE------CCCCCEEEEEEHH
Confidence                   111  111123332                    255678999998888 8888      6789999999999


Q ss_pred             HHHH
Q 011147          374 DVME  377 (492)
Q Consensus       374 DViE  377 (492)
                      |+++
T Consensus       118 dll~  121 (122)
T cd04637         118 DLLK  121 (122)
T ss_pred             Hhhh
Confidence            9986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.54  E-value=1.1e-06  Score=75.03  Aligned_cols=108  Identities=9%  Similarity=0.128  Sum_probs=72.5

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++.+++.+.++. ++++.+.+.+++++||.++ .++++|++...|+    .+...+.       ..+.++.++       
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl----~~~~~~~-------~~~~~v~~~-------   61 (111)
T cd04603           2 QTVSVNCENPLR-EAIKMINELGARAVVVVDE-ENKVLGQVTLSDL----LEIGPND-------YETLKVCEV-------   61 (111)
T ss_pred             ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHH----Hhhcccc-------ccccChhhe-------
Confidence            456789999998 9999998899999999974 3689999984442    2211000       011223322       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +....  ..++...                    ++.++++.|.+++.+ ++|+      |++|+++|+||..|
T Consensus        62 ------~~~~~--~~v~~~~--------------------~l~~al~~m~~~~~~~lpVv------d~~~~~~Giit~~d  107 (111)
T cd04603          62 ------YIVPV--PIVYCDS--------------------KVTDLLRIFRETEPPVVAVV------DKEGKLVGTIYERE  107 (111)
T ss_pred             ------eecCC--cEECCCC--------------------cHHHHHHHHHHcCCCeEEEE------cCCCeEEEEEEhHH
Confidence                  11000  0012221                    356789999999998 9999      67799999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       108 i~~  110 (111)
T cd04603         108 LLR  110 (111)
T ss_pred             hhc
Confidence            975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.54  E-value=6e-07  Score=76.00  Aligned_cols=108  Identities=9%  Similarity=0.139  Sum_probs=72.4

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.++++. ++.+.+.+.+++++||.++  +.++|++..+++++.....-.         ..+.++.++       
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~---------~~~~~i~~~-------   62 (111)
T cd04800           2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGL---------DPDTPVSEV-------   62 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCC---------CccCCHHHH-------
Confidence            456788999998 9999998889999999975  899999996664432221100         001111111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+.  ...++...                    ++.++++.|++.+.+ ++|+      ++ |+++|+||.+|
T Consensus        63 ------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~-~~~~Giit~~d  107 (111)
T cd04800          63 ------MTAP--PITIPPDA--------------------TVFEALLLMLERGIHHLPVV------DD-GRLVGVISATD  107 (111)
T ss_pred             ------hCCC--CeEECCCC--------------------cHHHHHHHHHHcCCCeeeEe------EC-CEEEEEEEHHH
Confidence                  1111  11123322                    366789999999988 8888      44 89999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       108 i~~  110 (111)
T cd04800         108 LLR  110 (111)
T ss_pred             hhc
Confidence            974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.54  E-value=6.6e-07  Score=75.64  Aligned_cols=107  Identities=13%  Similarity=0.185  Sum_probs=72.5

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.++++. ++.+.+.+.+++++||+++  ++++|+++.+++++    .....       ....++.++       
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~----~~~~~-------~~~~~v~~~-------   60 (110)
T cd04588           2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAH----AIARG-------LELAKVKDV-------   60 (110)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHH----HHhcc-------ccccCHHHH-------
Confidence            456788999998 9999999999999999975  78999998555432    21110       000112111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+  ...+++...+                    +.++++.|++.+.+ ++|+      +++|+++|+||..|
T Consensus        61 ------~~~--~~~~v~~~~~--------------------~~~~~~~~~~~~~~~~~V~------~~~~~~~G~i~~~d  106 (110)
T cd04588          61 ------MTK--DVITIDEDEQ--------------------LYDAIRLMNKHNVGRLIVT------DDEGRPVGIITRTD  106 (110)
T ss_pred             ------hcC--CceEECCCCC--------------------HHHHHHHHHhcCCCEEEEE------CCCCCEEEEEEhHH
Confidence                  111  1112343332                    55678999999888 8888      67799999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       107 l~~  109 (110)
T cd04588         107 ILR  109 (110)
T ss_pred             hhc
Confidence            975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.54  E-value=5.1e-07  Score=76.42  Aligned_cols=110  Identities=12%  Similarity=0.205  Sum_probs=73.1

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.++++. ++.+.+.+.+++++||++++ ++++|+++..++.+...+..     ..    ...++.++       
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~-----~~----~~~~v~~~-------   63 (114)
T cd04613           2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPS-----LY----DLVVASDI-------   63 (114)
T ss_pred             CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhccc-----cc----ccEEHHHh-------
Confidence            456788999998 99999999999999999754 78999999665433221100     00    00111111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCC-CCcEEEEechh
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSV-DEEVIGIITLE  373 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde-~g~vvGIITlE  373 (492)
                            +.+.  ...++...                    ++.++++.|++.+.+ ++|+      |+ +|+++|+||..
T Consensus        64 ------~~~~--~~~v~~~~--------------------~~~~~~~~~~~~~~~~~~Vv------~~~~~~~~Gvvt~~  109 (114)
T cd04613          64 ------MTKP--PVVVYPED--------------------SLEDALKKFEDSDYEQLPVV------DDDPGKLLGILSRS  109 (114)
T ss_pred             ------ccCC--CcEEcCCC--------------------CHHHHHHHHhhCCccEeeEE------eCCCCEEEEEEEhH
Confidence                  1111  11123332                    256679999999888 8888      56 79999999999


Q ss_pred             HHHH
Q 011147          374 DVME  377 (492)
Q Consensus       374 DViE  377 (492)
                      |+++
T Consensus       110 di~~  113 (114)
T cd04613         110 DLLS  113 (114)
T ss_pred             Hhhc
Confidence            9874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.53  E-value=5.9e-07  Score=76.15  Aligned_cols=110  Identities=9%  Similarity=0.133  Sum_probs=73.0

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..+..++++. ++++.+.+.+++++||++++ +.++|+++..++++.+.+....         ...++.++       
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~---------~~~~v~~~-------   64 (114)
T cd04604           3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDI---------LTLPVADV-------   64 (114)
T ss_pred             cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCcc---------ccCCHHHh-------
Confidence            455678899998 99999988899999999753 6899999866554433221100         00122222       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+..  ..++.+.                    .+.++++.|.+.+.+ ++|+      +++|+++|+||..|
T Consensus        65 ------~~~~~--~~v~~~~--------------------~~~~~~~~~~~~~~~~~~Vv------~~~~~~iG~it~~d  110 (114)
T cd04604          65 ------MTRNP--KTIDPDA--------------------LAAEALELMEENKITALPVV------DDNGRPVGVLHIHD  110 (114)
T ss_pred             ------hccCC--eEECCCC--------------------cHHHHHHHHHHcCCCEEEEE------CCCCCEEEEEEHHH
Confidence                  11111  1123332                    256678999988887 8888      67899999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       111 i~~  113 (114)
T cd04604         111 LLR  113 (114)
T ss_pred             hhc
Confidence            975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.53  E-value=7.7e-07  Score=75.08  Aligned_cols=108  Identities=10%  Similarity=0.176  Sum_probs=72.2

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++.+++.++++. ++.+.+.+.++..+||+++  ++++|+++.+++++.......          .+.++.++       
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~----------~~~~v~~~-------   61 (111)
T cd04611           2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPD----------LQTPVGEV-------   61 (111)
T ss_pred             CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCC----------CCcCHHHh-------
Confidence            556789999998 9999999889999999976  789999985543222111100          01111111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+  ....++...                    ++.++++.|++.+.+ ++|+      |++|+++|+||..|
T Consensus        62 ------~~~--~~~~~~~~~--------------------~l~~~l~~~~~~~~~~~~Vv------~~~~~~~Gvi~~~d  107 (111)
T cd04611          62 ------MSS--PLLTVPADT--------------------SLYDARQLMREHGIRHLVVV------DDDGELLGLLSQTD  107 (111)
T ss_pred             ------cCC--CceEECCCC--------------------CHHHHHHHHHHcCCeEEEEE------CCCCcEEEEEEhHH
Confidence                  111  111123322                    255679999988888 8888      67799999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       108 i~~  110 (111)
T cd04611         108 LLQ  110 (111)
T ss_pred             hhc
Confidence            975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.53  E-value=6.2e-07  Score=76.06  Aligned_cols=108  Identities=6%  Similarity=0.115  Sum_probs=71.8

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.++++. ++++.+.+++++++||+++ .++++|+++.+|+++......          ..+.++.+.       
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~----------~~~~~v~~~-------   62 (111)
T cd04626           2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLFES----------FLEKKVFNI-------   62 (111)
T ss_pred             CceEECCCccHH-HHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhhcc----------cccCcHHHH-------
Confidence            456789999998 8999999999999999975 368999998555432111000          001112111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+.  ..+++.+.                    .+.++++.|.+.+.. ++|+      |+ |+++|+||..|
T Consensus        63 ------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~-~~~~G~it~~d  107 (111)
T cd04626          63 ------VSQD--VFYVNEED--------------------TIDEALDIMREKQIGRLPVV------DD-NKLIGVVRTKD  107 (111)
T ss_pred             ------hcCC--cEEEcCCC--------------------cHHHHHHHHHHcCCCeeeEe------EC-CEEEEEEEhHH
Confidence                  1111  11123332                    256789999999888 8888      55 89999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       108 i~~  110 (111)
T cd04626         108 ILD  110 (111)
T ss_pred             hcc
Confidence            975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.52  E-value=6.8e-07  Score=75.69  Aligned_cols=106  Identities=15%  Similarity=0.292  Sum_probs=72.2

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++.+++.++++. ++.+.+.+.+++++||+++  ++++|++...|+.+    .+...       ..+.++.++       
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~----~~~~~-------~~~~~~~~~-------   61 (110)
T cd04595           3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEK----ALRHG-------LGHAPVKDY-------   61 (110)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHH----HHhcc-------cccCcHHHH-------
Confidence            567789999998 9999998889999999986  78999998555432    11100       001122222       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+  .+..++.+.                    .+.++++.|++.+.+ ++|+      + +|+++|+||+.|
T Consensus        62 ------~~~--~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~V~------~-~~~~~Gvvt~~d  106 (110)
T cd04595          62 ------MST--DVVTVPPDT--------------------PLSEVQELMVEHDIGRVPVV------E-DGRLVGIVTRTD  106 (110)
T ss_pred             ------hcC--CCEEECCCC--------------------cHHHHHHHHHHcCCCeeEEE------e-CCEEEEEEEhHH
Confidence                  111  111123332                    255678999999888 8888      5 899999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       107 i~~  109 (110)
T cd04595         107 LLR  109 (110)
T ss_pred             hhc
Confidence            985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.52  E-value=7.6e-07  Score=76.67  Aligned_cols=119  Identities=11%  Similarity=0.195  Sum_probs=73.9

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++.++..++++. ++.+.+.+.+++++||+++ .++++|++...++++....................++.++       
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   72 (122)
T cd04635           2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKI-------   72 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHH-------
Confidence            567889999998 9999999899999999964 4789999997665432100000000000000000111111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+  .+..++..+                    ++.++++.|.+.+.+ ++|+      |++|+++|+||.+|
T Consensus        73 ------~~~--~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------d~~g~~~Gvit~~d  118 (122)
T cd04635          73 ------MST--PVYSVTPDD--------------------SIATAVELMLEHDIGRLPVV------NEKDQLVGIVDRHD  118 (122)
T ss_pred             ------hcC--CCeeECCCC--------------------CHHHHHHHHHHcCCCeeeEE------cCCCcEEEEEEhHH
Confidence                  100  111123332                    255678999999988 8888      67899999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       119 l~~  121 (122)
T cd04635         119 VLK  121 (122)
T ss_pred             hhc
Confidence            985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.49  E-value=7.8e-07  Score=75.53  Aligned_cols=111  Identities=9%  Similarity=0.111  Sum_probs=73.1

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.++++. ++.+.+.+.+++++||+++ .++++|+++.+++.+.+.+.....       ..+.++.++       
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~-------~~~~~v~~~-------   65 (114)
T cd04629           2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDD-NGNLVGFLSEQDCLKQLLESSYHC-------DGVATVRDI-------   65 (114)
T ss_pred             CCeEeCCCCCHH-HHHHHHHhcCCCCccEECC-CCeEEEEeehHHHHHHhhhhhhcc-------CCCccHHHH-------
Confidence            356788999998 9999998889999999974 368999999666544443221000       001122222       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+  ....++...                    ++.++++.|.+.+.+ ++|+      |+ |.++|+||..|
T Consensus        66 ------~~~--~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~-~~~~Gvit~~d  110 (114)
T cd04629          66 ------MTT--EVLTVSPDD--------------------SIVDLAQLMLKAKPKRYPVV------DD-GKLVGQISRRD  110 (114)
T ss_pred             ------hcc--CceEECCCC--------------------cHHHHHHHHHHhCCCccCEE------EC-CEEEEEEEHHH
Confidence                  110  111123332                    256779999999888 8888      45 89999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       111 i~~  113 (114)
T cd04629         111 VLR  113 (114)
T ss_pred             Hhc
Confidence            975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.49  E-value=9.8e-07  Score=74.15  Aligned_cols=43  Identities=14%  Similarity=0.294  Sum_probs=36.6

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      ++.+++.++++. ++.+.+.+.+++++||+++  ++++|+++..++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl   44 (110)
T cd04609           2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDL   44 (110)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHH
Confidence            456788999998 9999999999999999975  789999985543

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.48  E-value=1.3e-06  Score=74.11  Aligned_cols=110  Identities=9%  Similarity=0.229  Sum_probs=72.7

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++.+++.++++. ++.+.+.+.+++.+||+++  ++++|++...+++.   +.+.+. ...    ...++.++       
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~---~~~~~~-~~~----~~~~~~~~-------   63 (113)
T cd04622           2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVV---RAVAEG-RDP----DTTTVGDV-------   63 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHH---HHhhcc-CCc----ccCCHHHh-------
Confidence            456789999998 9999999999999999975  89999999666431   111110 000    00012211       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+.  ...++...                    ++.++++.|++.+.+ ++|+      |++|+++|+||.+|
T Consensus        64 ------~~~~--~~~v~~~~--------------------~~~~~~~~~~~~~~~~~~V~------~~~~~~~G~it~~d  109 (113)
T cd04622          64 ------MTRG--VVTVTEDD--------------------DVDEAARLMREHQVRRLPVV------DDDGRLVGIVSLGD  109 (113)
T ss_pred             ------ccCC--ccEECCCC--------------------CHHHHHHHHHHcCCCeeeEE------CCCCcEEEEEEHHH
Confidence                  1111  11122222                    256678999988887 8888      67799999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       110 i~~  112 (113)
T cd04622         110 LAR  112 (113)
T ss_pred             hhc
Confidence            975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.48  E-value=1.3e-06  Score=74.15  Aligned_cols=109  Identities=11%  Similarity=0.189  Sum_probs=72.6

Q ss_pred             eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhh
Q 011147          217 IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLK  296 (492)
Q Consensus       217 v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~  296 (492)
                      ...++.++++. ++++.+.+.+++++||+++ .+.++|+++.+++++...+.-     .    ..+.++.++        
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~-----~----~~~~~i~~~--------   63 (113)
T cd04615           3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESE-----E----LKDAKVREV--------   63 (113)
T ss_pred             CEEeeCCCcHH-HHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhh-----h----hcCCcHHHh--------
Confidence            35688999998 9999999999999999975 378999999665443222110     0    001122221        


Q ss_pred             hhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHH
Q 011147          297 QRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDV  375 (492)
Q Consensus       297 ~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDV  375 (492)
                           +...  ...++.+.                    ++.++++.|.+.+.+ ++|+      |++|+++|+||..|+
T Consensus        64 -----~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------d~~g~~~Gvvt~~dl  110 (113)
T cd04615          64 -----MNSP--VITIDAND--------------------SIAKARWLMSNNNISRLPVL------DDKGKVGGIVTEDDI  110 (113)
T ss_pred             -----ccCC--ceEECCCC--------------------cHHHHHHHHHHcCCCeeeEE------CCCCeEEEEEEHHHh
Confidence                 1111  11123222                    255678999998887 8888      678999999999999


Q ss_pred             HH
Q 011147          376 ME  377 (492)
Q Consensus       376 iE  377 (492)
                      ++
T Consensus       111 ~~  112 (113)
T cd04615         111 LR  112 (113)
T ss_pred             hc
Confidence            75

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.47  E-value=1.7e-06  Score=71.78  Aligned_cols=110  Identities=10%  Similarity=0.243  Sum_probs=73.5

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.+.++. ++++.+.+.+++++||++++ ++++|++..++++....+.....         ...+.++       
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~---------~~~~~~~-------   63 (113)
T cd02205           2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDP---------LVTVGDV-------   63 (113)
T ss_pred             CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCc---------cccHHHH-------
Confidence            456788999998 99999999899999999754 78999998655443222211100         0001111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +..  ....++...                    ++.++++.|++.+.+ ++|+      |++|+++|++|..|
T Consensus        64 ------~~~--~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~V~------~~~~~~~G~i~~~d  109 (113)
T cd02205          64 ------MTR--DVVTVSPDT--------------------SLEEAAELMLEHGIRRLPVV------DDEGRLVGIVTRSD  109 (113)
T ss_pred             ------hcC--CceecCCCc--------------------CHHHHHHHHHHcCCCEEEEE------cCCCcEEEEEEHHH
Confidence                  110  111123222                    256779999998888 8898      67899999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       110 l~~  112 (113)
T cd02205         110 ILR  112 (113)
T ss_pred             hhc
Confidence            975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.47  E-value=1.2e-06  Score=74.20  Aligned_cols=108  Identities=14%  Similarity=0.162  Sum_probs=71.0

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      +...++.+.++. ++++.+.+.++..+||+++  ++++|+++.+++.+...+....         .+.++.+.       
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~---------~~~~i~~~-------   62 (111)
T cd04589           2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLP---------SSTPVGEI-------   62 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCC---------CCCCHHHH-------
Confidence            345788999998 9999999999999999975  6899999855543222111000         01112111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +...  ...++...                    .+.++++.|.+.+.+ ++|+      | +|+++|+||.+|
T Consensus        63 ------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~-~~~~~G~it~~d  107 (111)
T cd04589          63 ------ATFP--LITVDPDD--------------------FLFNALLLMTRHRIHRVVVR------E-GGEVVGVLEQTD  107 (111)
T ss_pred             ------hCCC--cEEECCCC--------------------cHHHHHHHHHHhCccEEEEe------e-CCEEEEEEEhHH
Confidence                  1111  11123332                    256679999999999 8888      4 589999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       108 l~~  110 (111)
T cd04589         108 LLS  110 (111)
T ss_pred             hhc
Confidence            975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.47  E-value=1.5e-06  Score=73.96  Aligned_cols=100  Identities=14%  Similarity=0.251  Sum_probs=71.1

Q ss_pred             cceEEEeCCCChHHHHHHHHHHcCCccceEEeCC--CCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCccccccc
Q 011147          215 SKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGT--PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININ  292 (492)
Q Consensus       215 ~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~--~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~  292 (492)
                      .++..++.+++++ ++.+.+.+.+++++||+++.  .++++|+|+.+++++....                    +    
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------------~----   56 (105)
T cd04591           2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------------Y----   56 (105)
T ss_pred             CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH--------------------h----
Confidence            4677899999998 99999999999999999753  4689999985543221110                    0    


Q ss_pred             chhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEec
Q 011147          293 SNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIIT  371 (492)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIIT  371 (492)
                               +.+.  ...++...                    ++.++++.|++.+.+ ++|+       ++|+++|+||
T Consensus        57 ---------m~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~pVv-------~~~~~~Gvvt   98 (105)
T cd04591          57 ---------IDPS--PFTVSPRT--------------------SLEKVHQLFRKLGLRHLLVV-------DEGRLVGIIT   98 (105)
T ss_pred             ---------ccCC--CceECCCC--------------------cHHHHHHHHHHcCCCEEEEE-------ECCeEEEEEE
Confidence                     1000  11123332                    255678999999988 8887       4789999999


Q ss_pred             hhHHHH
Q 011147          372 LEDVME  377 (492)
Q Consensus       372 lEDViE  377 (492)
                      ..|+++
T Consensus        99 ~~dl~~  104 (105)
T cd04591          99 RKDLLK  104 (105)
T ss_pred             hhhhhc
Confidence            999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.46  E-value=5.8e-07  Score=79.03  Aligned_cols=49  Identities=8%  Similarity=0.193  Sum_probs=40.2

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      ++.+++.++++. ++++.+.+++++.+||++++ ++++|++..+++++.+.
T Consensus         3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~   51 (124)
T cd04608           3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLS   51 (124)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHH
Confidence            567899999998 99999999999999999753 68999999666554443

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.46  E-value=1e-06  Score=78.63  Aligned_cols=46  Identities=17%  Similarity=0.130  Sum_probs=38.8

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      ++.+++.++++. ++++.+.+.+++++||+++ .++++|+++..++++
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~   47 (135)
T cd04621           2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAF   47 (135)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHH
Confidence            466789999998 9999999999999999974 478999999666544

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.46  E-value=1.6e-06  Score=73.90  Aligned_cols=108  Identities=12%  Similarity=0.153  Sum_probs=72.5

Q ss_pred             eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhh
Q 011147          217 IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLK  296 (492)
Q Consensus       217 v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~  296 (492)
                      .+.++.++++. ++.+.+.+.++..+||+++ .++++|+++.+|+++.+.+...          .+.++.++        
T Consensus         4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~----------~~~~v~~~--------   63 (113)
T cd04607           4 QLLVSPDASIL-DALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKGLS----------LDDPVSEV--------   63 (113)
T ss_pred             ceEECCCCCHH-HHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcCCC----------cCCCHHHh--------
Confidence            35688999998 9999998888889999965 3689999996664433221110          01122222        


Q ss_pred             hhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHH
Q 011147          297 QRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDV  375 (492)
Q Consensus       297 ~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDV  375 (492)
                           +.....  .++...                    ++.++++.|.+.+.+ ++|+      |++|+++|+||.+|+
T Consensus        64 -----~~~~~~--~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~~~~~Gvit~~di  110 (113)
T cd04607          64 -----MNRNPI--TAKVGS--------------------SREEILALMRERSIRHLPIL------DEEGRVVGLATLDDL  110 (113)
T ss_pred             -----hcCCCE--EEcCCC--------------------CHHHHHHHHHHCCCCEEEEE------CCCCCEEEEEEhHHh
Confidence                 100110  123322                    256789999999888 9999      678999999999998


Q ss_pred             HH
Q 011147          376 ME  377 (492)
Q Consensus       376 iE  377 (492)
                      +.
T Consensus       111 ~~  112 (113)
T cd04607         111 LS  112 (113)
T ss_pred             cc
Confidence            73

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.46  E-value=9.8e-07  Score=95.48  Aligned_cols=119  Identities=12%  Similarity=0.161  Sum_probs=85.1

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS  281 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~  281 (492)
                      ++..+++++|++  ++++++.++++. ++.+.+.+++++.+||.++ .+.++|+|+.+|        +...  +     .
T Consensus        86 l~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rD--------L~~~--~-----~  146 (479)
T PRK07807         86 VAWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDE-EGRPVGVVTEAD--------CAGV--D-----R  146 (479)
T ss_pred             Hhhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECC-CCeEEEEEeHHH--------HhcC--c-----c
Confidence            446677899974  778899999998 9999999999999999974 467999998443        2211  0     0


Q ss_pred             cCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCC
Q 011147          282 KAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLP  360 (492)
Q Consensus       282 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~p  360 (492)
                      ..++.++             +.+..  ..++...                    .+.++++.|.+++.+ ++|+      
T Consensus       147 ~~~V~di-------------Mt~~~--itV~~d~--------------------sL~eAl~lM~~~~i~~LPVV------  185 (479)
T PRK07807        147 FTQVRDV-------------MSTDL--VTLPAGT--------------------DPREAFDLLEAARVKLAPVV------  185 (479)
T ss_pred             CCCHHHh-------------ccCCc--eEECCCC--------------------cHHHHHHHHHhcCCCEEEEE------
Confidence            1223333             11111  1123332                    266789999999999 9999      


Q ss_pred             CCCCcEEEEechhHHHHHHc
Q 011147          361 SVDEEVIGIITLEDVMEELL  380 (492)
Q Consensus       361 de~g~vvGIITlEDViEeLl  380 (492)
                      |++|+++|+||..||++..-
T Consensus       186 D~~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        186 DADGRLVGVLTRTGALRATI  205 (479)
T ss_pred             cCCCeEEEEEEHHHHHHHhh
Confidence            77899999999999987543

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.45  E-value=1.6e-06  Score=73.14  Aligned_cols=108  Identities=12%  Similarity=0.247  Sum_probs=71.7

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.++++. ++++.+.+.+++++||+++  +.++|+++.+|+.+    ..... ...     ..++.+.       
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~----~~~~~-~~~-----~~~~~~~-------   61 (111)
T cd04612           2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRR----VPAEG-REA-----TVLVGDV-------   61 (111)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHH----HHhcC-ccc-----ccCHHHh-------
Confidence            456789999998 9999999889999999976  88999999555322    11110 000     0001111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+.  ...++.+.                    ++.++++.|++.+.+ ++|+      |++|+++|+||..|
T Consensus        62 ------~~~~--~~~v~~~~--------------------~~~~~~~~~~~~~~~~~~V~------~~~~~~~G~it~~d  107 (111)
T cd04612          62 ------MTRD--PVTASPDE--------------------TLRDALKRMAERDIGRLPVV------DDSGRLVGIVSRSD  107 (111)
T ss_pred             ------ccCC--CeEECCCC--------------------CHHHHHHHHHhCCCCeeeEE------cCCCCEEEEEEHHH
Confidence                  1111  11123332                    255678999998888 9998      67799999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       108 i~~  110 (111)
T cd04612         108 LLR  110 (111)
T ss_pred             hhh
Confidence            975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.45  E-value=1.1e-06  Score=73.39  Aligned_cols=103  Identities=12%  Similarity=0.193  Sum_probs=70.5

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.++++. ++++.+.+++++++||.++  ++++|+++.+++    .+...           +.++.++       
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l----~~~~~-----------~~~~~~~-------   56 (105)
T cd04599           2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVED--GKLVGIITSRDV----RRAHP-----------NRLVADA-------   56 (105)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEehHHh----hcccc-----------cCCHHHH-------
Confidence            456788999998 8999998889999999973  789999984432    21110           1112222       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +. . ....++...                    ++.++++.|.+.+.. ++|+      |+ |+++|+||..|
T Consensus        57 ------~~-~-~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~-~~~~G~it~~~  101 (105)
T cd04599          57 ------MT-R-EVVTISPEA--------------------SLLEAKRLMEEKKIERLPVL------RE-RKLVGIITKGT  101 (105)
T ss_pred             ------cc-C-CCEEECCCC--------------------CHHHHHHHHHHcCCCEeeEE------EC-CEEEEEEEHHH
Confidence                  10 0 111123332                    256779999999998 8898      55 99999999999


Q ss_pred             HHHH
Q 011147          375 VMEE  378 (492)
Q Consensus       375 ViEe  378 (492)
                      +++|
T Consensus       102 l~~~  105 (105)
T cd04599         102 IALE  105 (105)
T ss_pred             hccC
Confidence            9854

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.45  E-value=1.3e-06  Score=76.99  Aligned_cols=46  Identities=11%  Similarity=0.309  Sum_probs=38.3

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      ++.++..++++. ++++.+.+.+++++||+++ .++++|++...++++
T Consensus         2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~-~~~~~G~i~~~~l~~   47 (132)
T cd04636           2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIR   47 (132)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHhCCCccceECC-CCCEEEEEeHHHHHH
Confidence            456789999998 9999999899999999975 478999998665544

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.45  E-value=2.3e-06  Score=72.89  Aligned_cols=113  Identities=14%  Similarity=0.090  Sum_probs=70.6

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchh-hHHhhhccCCCcccccccch
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKE-IAEMEKSKAPMQHDININSN  294 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~-~~~~~~~~~~v~~v~~~~~~  294 (492)
                      ++.+++.++++. ++.+.+.+.+++++||+++ .++++|+++.++++    +.+..... .... -.+.++.++      
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~----~~~~~~~~~~~~~-~~~~~v~~~------   68 (116)
T cd04643           2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDK-EGKYVGTISLTDIL----WKLKGLENLDLER-LVDLKVIDV------   68 (116)
T ss_pred             CcEEECCCCcHH-HHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHH----HHhhccCchhHHH-HhCCcHHHH------
Confidence            678899999998 9999999999999999974 46899999865543    33221100 0000 001111111      


Q ss_pred             hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcceEEecccCCCCCCCcEEEEechhH
Q 011147          295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~~lVv~~~~~pde~g~vvGIITlED  374 (492)
                              ++.. ...++.+.                    ++.++++.|.+.+ .++|+      |++|+++|+||+.|
T Consensus        69 --------~~~~-~~~v~~~~--------------------~l~~a~~~~~~~~-~~~Vv------~~~~~~~Gvit~~d  112 (116)
T cd04643          69 --------MNTD-VPVIIDDA--------------------DIEEILHLLIDQP-FLPVV------DDDGIFIGIITRRE  112 (116)
T ss_pred             --------hcCC-CceecCCC--------------------CHHHHHHHHhcCC-ceeEE------eCCCeEEEEEEHHH
Confidence                    1110 11122222                    2567788997643 37788      68899999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       113 il~  115 (116)
T cd04643         113 ILK  115 (116)
T ss_pred             hhc
Confidence            975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.43  E-value=2e-06  Score=72.11  Aligned_cols=103  Identities=15%  Similarity=0.278  Sum_probs=71.2

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.+.++. ++++.+.+.+++++||+++  ++++|+++.++++    +. ..          +.++.++       
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~----~~-~~----------~~~~~~~-------   57 (107)
T cd04610           3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLL----GK-DP----------DETVEEI-------   57 (107)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhh----cc-Cc----------cccHHHh-------
Confidence            567789999998 9999998888999999974  7899999844432    11 00          1112222       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +. . ....++...                    ++.++++.|++.+.+ ++|+      +++|+++|+||..|
T Consensus        58 ------~~-~-~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~g~~~Gvi~~~d  103 (107)
T cd04610          58 ------MS-K-DLVVAVPEM--------------------DIMDAARVMFRTGISKLPVV------DENNNLVGIITNTD  103 (107)
T ss_pred             ------CC-C-CCeEECCCC--------------------CHHHHHHHHHHhCCCeEeEE------CCCCeEEEEEEHHH
Confidence                  10 0 011123322                    256678999998888 8898      68899999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       104 i~~  106 (107)
T cd04610         104 VIR  106 (107)
T ss_pred             hhc
Confidence            975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.43  E-value=2e-06  Score=72.85  Aligned_cols=109  Identities=11%  Similarity=0.114  Sum_probs=72.4

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..+..++++. ++.+.+.+++++++||.++  ++++|+|...+++..+... ..   ..    ...++.++       
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~-~~---~~----~~~~v~~i-------   63 (113)
T cd04587           2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQ-GL---DP----ESTLVERV-------   63 (113)
T ss_pred             CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhc-CC---Cc----CcCCHHHh-------
Confidence            566788999998 8999998889999999975  8899999966654322211 00   00    00111111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+.  ...++...                    ++.++++.|.+.+.+ ++|+      +++|+++|+||..|
T Consensus        64 ------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~l~Vv------~~~~~~~Gvvs~~d  109 (113)
T cd04587          64 ------MTPN--PVCATSDT--------------------PVLEALHLMVQGKFRHLPVV------DKSGQVVGLLDVTK  109 (113)
T ss_pred             ------cCCC--CeEEcCCC--------------------CHHHHHHHHHHcCCCcccEE------CCCCCEEEEEEHHH
Confidence                  1111  11123332                    255679999998887 8888      67899999999999


Q ss_pred             HH
Q 011147          375 VM  376 (492)
Q Consensus       375 Vi  376 (492)
                      ++
T Consensus       110 l~  111 (113)
T cd04587         110 LT  111 (113)
T ss_pred             hc
Confidence            86

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.43  E-value=1.2e-06  Score=76.69  Aligned_cols=121  Identities=13%  Similarity=0.192  Sum_probs=71.9

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH-HhhccchhhHHhhhccCCCcccccccch
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV-KCKNDSKEIAEMEKSKAPMQHDININSN  294 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv-k~l~~~~~~~~~~~~~~~v~~v~~~~~~  294 (492)
                      ++.++..++++. ++++.+.++++..+||.++ .++++|+++.+|+.+... +.....    .....+.++.++      
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~----~~~~~~~~v~~i------   69 (126)
T cd04640           2 KPIVIPADTSID-EALELMIKHGVRLLLVVDS-DDNFIGVITAVDLLGEEPIKRIQEG----GISRSELTVADV------   69 (126)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHhhChhhHHHHHc----CCCchheEHHHh------
Confidence            356788999998 9999998888889999974 378999999555432100 000000    000001112222      


Q ss_pred             hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC-CcEEEEech
Q 011147          295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD-EEVIGIITL  372 (492)
Q Consensus       295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~-g~vvGIITl  372 (492)
                             +.+......++.+..                ...++.+++++|.+++.+ ++|+      |++ |.++|+||+
T Consensus        70 -------m~~~~~~~~~~~~~~----------------~~~~l~~~l~~m~~~~~~~lpVv------d~~~~~~~G~it~  120 (126)
T cd04640          70 -------MTPKEDLKALDLEEL----------------ENASVGDVVETLKASGRQHALVV------DREHHQIRGIIST  120 (126)
T ss_pred             -------cCchhhhccccHHHh----------------ccCcHHHHHHHHHHCCCceEEEE------ECCCCEEEEEEeH
Confidence                   110000000010000                012366789999999998 9999      565 789999999


Q ss_pred             hHHHH
Q 011147          373 EDVME  377 (492)
Q Consensus       373 EDViE  377 (492)
                      +|+++
T Consensus       121 ~di~~  125 (126)
T cd04640         121 SDIAR  125 (126)
T ss_pred             HHHhh
Confidence            99986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.42  E-value=1.7e-06  Score=94.27  Aligned_cols=155  Identities=14%  Similarity=0.090  Sum_probs=99.8

Q ss_pred             ccCHHHHHHHHHhhccccCCCCCCC-hhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccce
Q 011147          165 LLRRAELKTLVDMHGNEAGKGGELT-HDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVP  243 (492)
Q Consensus       165 ~~s~eEL~~lv~~~~~e~~~~g~L~-~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiP  243 (492)
                      ..++.++-..+...|--+-=....+ ++....++.+++.+     ..|+  .++++++.++++. ++++.+.+++++.+|
T Consensus        64 ~vt~~~lA~Ama~aGGiGfI~~~as~E~q~~~Irkvk~~~-----~gmi--~dpvtV~pd~tV~-dA~~lm~~~~~~~lp  135 (505)
T PLN02274         64 TVTESDMAIAMAALGGIGIVHYNNTAEEQAAIVRKAKSRR-----VGFV--SDPVVKSPSSTIS-SLDELKASRGFSSVC  135 (505)
T ss_pred             ccchHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHhhccc-----cccc--CCCeeeCCCCcHH-HHHHHHHhcCCceEE
Confidence            4667777766653210000000123 34467788887553     2366  3778899999998 999999999999999


Q ss_pred             EEeCC--CCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcc
Q 011147          244 IYVGT--PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVI  321 (492)
Q Consensus       244 V~~~~--~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~  321 (492)
                      |.+++  .+.++|+|+.+|+.     ....         .+.++.++             +++......++...      
T Consensus       136 VvD~~~~~GklvGIVT~~DL~-----~v~~---------~~~~V~eI-------------Mt~~~~lvtv~~~~------  182 (505)
T PLN02274        136 VTETGTMGSKLLGYVTKRDWD-----FVND---------RETKLSEV-------------MTSDDDLVTAPAGI------  182 (505)
T ss_pred             EEeCCCcCCeEEEEEEHHHHh-----hccc---------cCCcHHHH-------------hccCCCcEEECCCC------
Confidence            99753  36899999955431     1110         12233333             11110001123322      


Q ss_pred             cchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHc
Q 011147          322 SSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELL  380 (492)
Q Consensus       322 ~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLl  380 (492)
                                    ++.++++.|++.+.+ ++|+      |++|.++|+||++|+++.+.
T Consensus       183 --------------sL~eAl~~m~~~~~~~LPVV------D~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        183 --------------DLEEAEAVLKDSKKGKLPLV------NEDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             --------------CHHHHHHHHHHcCCCEEEEE------cCCCeEEEEEEHHHHHHHhh
Confidence                          366789999999999 9999      78899999999999998874

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.42  E-value=2.6e-06  Score=71.46  Aligned_cols=93  Identities=12%  Similarity=0.186  Sum_probs=69.0

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++.+++.+.++. ++++.+.+++++.+||.++ .++++|+++.+        ++....             .        
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~--------dl~~~~-------------~--------   50 (96)
T cd04614           2 NVPTVWEETPLP-VAVRIMELANVKALPVLDD-DGKLSGIITER--------DLIAKS-------------E--------   50 (96)
T ss_pred             CccEeCCCCcHH-HHHHHHHHcCCCeEEEECC-CCCEEEEEEHH--------HHhcCC-------------C--------
Confidence            567789999998 9999998899999999974 37899999833        322100             0        


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                                  ...++...+                    +.++++.|++.+.+ ++|+      |++|+++|+||..|
T Consensus        51 ------------~~~v~~~~~--------------------l~~a~~~m~~~~~~~lpVv------~~~~~~~Giit~~d   92 (96)
T cd04614          51 ------------VVTATKRTT--------------------VSECAQKMKRNRIEQIPII------NGNDKLIGLLRDHD   92 (96)
T ss_pred             ------------cEEecCCCC--------------------HHHHHHHHHHhCCCeeeEE------CCCCcEEEEEEHHH
Confidence                        011122222                    55679999999998 9998      67799999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      ++.
T Consensus        93 i~~   95 (96)
T cd04614          93 LLK   95 (96)
T ss_pred             hhc
Confidence            974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.42  E-value=1.9e-06  Score=73.69  Aligned_cols=108  Identities=11%  Similarity=0.120  Sum_probs=72.1

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCC--CCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccc
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGT--PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININS  293 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~--~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~  293 (492)
                      ++..+..++++. ++++.+.+.+++++||+++.  .++++|++..+++    ..... .         ..+++++     
T Consensus         3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl----~~~~~-~---------~~~v~~~-----   62 (114)
T cd04602           3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDI----DFLTD-S---------ETPLSEV-----   62 (114)
T ss_pred             CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHh----hhhhc-c---------CCCHHHh-----
Confidence            556788999998 99999988899999999752  4789999984442    11100 0         1112222     


Q ss_pred             hhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEech
Q 011147          294 NLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITL  372 (492)
Q Consensus       294 ~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITl  372 (492)
                              +......+..+..                    .++.++++.|++.+.+ ++|+      |++|.++|+||.
T Consensus        63 --------~~~~~~~~~~~~~--------------------~~l~~~l~~~~~~~~~~~pVv------~~~~~~~Gvit~  108 (114)
T cd04602          63 --------MTPREVLVVAPTG--------------------ITLEEANEILRESKKGKLPIV------NDDGELVALVTR  108 (114)
T ss_pred             --------cCCCceEEECCCC--------------------CCHHHHHHHHHhcCCCceeEE------CCCCeEEEEEEH
Confidence                    1001111101111                    1356789999999998 9999      788999999999


Q ss_pred             hHHHH
Q 011147          373 EDVME  377 (492)
Q Consensus       373 EDViE  377 (492)
                      +|+++
T Consensus       109 ~di~~  113 (114)
T cd04602         109 SDLKK  113 (114)
T ss_pred             HHhhc
Confidence            99975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.42  E-value=1.4e-06  Score=77.08  Aligned_cols=130  Identities=10%  Similarity=0.132  Sum_probs=74.0

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCccc-ccccch
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHD-ININSN  294 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v-~~~~~~  294 (492)
                      ++.+++.++++. ++++.+.+.++.++||+++ .+.++|++..+++++.+.......  ...........++. +.+...
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   78 (135)
T cd04586           3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTERR--RARWLDLLAGAEELAAAFVRS   78 (135)
T ss_pred             CCEEeCCCCCHH-HHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcch--hhhHHHHhcchHHHHHHHHHh
Confidence            567789999998 9999999999999999974 478999999666543221110000  00000000000000 000000


Q ss_pred             hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147          295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE  373 (492)
Q Consensus       295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE  373 (492)
                      .......+++. ....++.+.                    ++.++++.|++.+.+ ++|+      | +|+++|+||..
T Consensus        79 ~~~~v~~~~~~-~~~~v~~~~--------------------~~~~~~~~~~~~~~~~l~Vv------d-~g~~~Gvit~~  130 (135)
T cd04586          79 HGRKVADVMTR-PVVTVGEDT--------------------PLAEVAELMEEHRIKRVPVV------R-GGRLVGIVSRA  130 (135)
T ss_pred             cCCCHHHHhCC-CceEeCCCC--------------------cHHHHHHHHHHcCCCccCEe------c-CCEEEEEEEhH
Confidence            00000111111 111123332                    256779999999998 9998      6 89999999999


Q ss_pred             HHHH
Q 011147          374 DVME  377 (492)
Q Consensus       374 DViE  377 (492)
                      |+++
T Consensus       131 di~~  134 (135)
T cd04586         131 DLLR  134 (135)
T ss_pred             hhhc
Confidence            9975

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.42  E-value=1.7e-06  Score=73.89  Aligned_cols=111  Identities=14%  Similarity=0.260  Sum_probs=70.6

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcC-CccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccch
Q 011147          216 KIFSLDINSRLDEKTMGLIISNG-HSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSN  294 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~-~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~  294 (492)
                      ++..++.+.++. ++.+.+.+++ +..+||.++  ++++|++..+|+++.......         ..+.++.++      
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~---------~~~~~i~~~------   63 (115)
T cd04620           2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKD---------LSDLPIGEV------   63 (115)
T ss_pred             CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCC---------ccccCHHHh------
Confidence            345688999998 9999998888 667788763  789999986554332211100         001122221      


Q ss_pred             hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147          295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE  373 (492)
Q Consensus       295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE  373 (492)
                             +.+....  ++....                  .++.++++.|.+.+.+ ++|+      |++|.++|+||.+
T Consensus        64 -------~~~~~~~--v~~~~~------------------~~l~~a~~~~~~~~~~~~pVv------d~~~~~~Gvit~~  110 (115)
T cd04620          64 -------MTQPVVT--LQESEI------------------QDIFTALSLFRQHQIRHLPVL------DDQGQLIGLVTAE  110 (115)
T ss_pred             -------cCCCcEE--Eecccc------------------cCHHHHHHHHHHhCCceEEEE------cCCCCEEEEEEhH
Confidence                   1111111  122110                  1356789999999988 9999      6789999999999


Q ss_pred             HHHH
Q 011147          374 DVME  377 (492)
Q Consensus       374 DViE  377 (492)
                      |+++
T Consensus       111 dl~~  114 (115)
T cd04620         111 SIRQ  114 (115)
T ss_pred             Hhhc
Confidence            9975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.41  E-value=1.7e-06  Score=74.70  Aligned_cols=112  Identities=13%  Similarity=0.102  Sum_probs=72.4

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      +..+++.++++. ++++.+..++.+.+||.++ .++++|+|...++.+..... .+    .    ...++.++       
T Consensus         2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~~~-~~----~----~~~~~~~~-------   63 (118)
T cd04617           2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASIGG-AD----L----QKVPVGVI-------   63 (118)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHcC-CC----c----cCCCHHHH-------
Confidence            457889999998 8999998899999999974 36799999966543332211 00    0    01111111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC---CcEEEEec
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD---EEVIGIIT  371 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~---g~vvGIIT  371 (492)
                            +.+......++..                    .++.++++.|.+++.+ ++|+      |++   |+++|+||
T Consensus        64 ------~~~~~~~~~v~~~--------------------~~l~~~~~~~~~~~~~~lpVv------d~~~~~~~l~Gvit  111 (118)
T cd04617          64 ------MTRMPNITTTTPE--------------------ESVLEAAKKLIEHQVDSLPVV------EKVDEGLEVIGRIT  111 (118)
T ss_pred             ------hCCCCCcEEECCC--------------------CcHHHHHHHHHHcCCCEeeEE------eCCCccceEEEEEE
Confidence                  1100001112222                    2366789999999988 9999      555   68999999


Q ss_pred             hhHHHH
Q 011147          372 LEDVME  377 (492)
Q Consensus       372 lEDViE  377 (492)
                      .+|+++
T Consensus       112 ~~~l~~  117 (118)
T cd04617         112 KTNITK  117 (118)
T ss_pred             hhheec
Confidence            999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.40  E-value=2.7e-06  Score=72.69  Aligned_cols=119  Identities=10%  Similarity=0.131  Sum_probs=73.1

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++.+++.++++. ++++.+.+.++..+||+++  ++++|+++..++..........           ....+. .+... 
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~-----------~~~~~~-~~~~~-   65 (122)
T cd04585           2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATT-----------LDIWEL-YYLLS-   65 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhccccc-----------ccchhh-hhhhc-
Confidence            456789999998 9999999999999999975  8999999965543322110000           000000 00000 


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                      ......+++. ....++.+.                    ++.++++.|++.+.. ++|+      |++|+++|+||..|
T Consensus        66 ~~~~~~~~~~-~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~~~~~Gvvt~~d  118 (122)
T cd04585          66 KIKVSDIMTR-DPITVSPDA--------------------SVEEAAELMLERKISGLPVV------DDQGRLVGIITESD  118 (122)
T ss_pred             ccCHHHhccC-CCeEeCCCC--------------------cHHHHHHHHHHcCCCceeEE------CCCCcEEEEEEHHH
Confidence            0000011100 111123322                    256778999999888 9898      67799999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       119 i~~  121 (122)
T cd04585         119 LFR  121 (122)
T ss_pred             hhh
Confidence            985

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.40  E-value=2.5e-06  Score=74.41  Aligned_cols=121  Identities=15%  Similarity=0.272  Sum_probs=73.4

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccc--hhhH--HhhhccCCCcccccc
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDS--KEIA--EMEKSKAPMQHDINI  291 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~--~~~~--~~~~~~~~v~~v~~~  291 (492)
                      ++..++.++++. ++.+.+.+.+++.+||++++ +.++|+++.+|+++.+.+.-...  ...+  .....+.++.++   
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   76 (128)
T cd04632           2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDA---   76 (128)
T ss_pred             CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHH---
Confidence            456788999998 99999999999999999754 78999999776554332211000  0000  000000111111   


Q ss_pred             cchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEe
Q 011147          292 NSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGII  370 (492)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGII  370 (492)
                                +.+.  ..+++...                    .+.++++.|.+.+.+ ++|++.    |++|+++|+|
T Consensus        77 ----------~~~~--~~~v~~~~--------------------~l~~~l~~~~~~~~~~~~V~~~----~~~~~~~Gvi  120 (128)
T cd04632          77 ----------MSSP--VITASPND--------------------SVRDAVDRMLENDDSSVVVVTP----DDDTKVVGIL  120 (128)
T ss_pred             ----------hcCC--CceECCCC--------------------cHHHHHHHHHhCCCCeEeEecc----CCCCcEEEEE
Confidence                      1111  11123332                    256678999988877 766620    2458999999


Q ss_pred             chhHHHH
Q 011147          371 TLEDVME  377 (492)
Q Consensus       371 TlEDViE  377 (492)
                      |.+|+++
T Consensus       121 t~~di~~  127 (128)
T cd04632         121 TKKDVLR  127 (128)
T ss_pred             EhHhhhc
Confidence            9999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.38  E-value=4.9e-06  Score=69.86  Aligned_cols=105  Identities=10%  Similarity=0.147  Sum_probs=71.4

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.++++. ++.+.+.+.++.++||++++ ++++|+++.+|+    .+....          ..++.++       
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl----~~~~~~----------~~~v~~~-------   59 (109)
T cd04583           3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESL----EQAYKE----------AKSLEDI-------   59 (109)
T ss_pred             CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHH----HHHhhc----------CCcHhHh-------
Confidence            556789999998 99999988999999999753 689999984443    221110          1112222       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+.  ...++.+.                    ++.++++.|++.+.+ ++|+      +++|+++|+||.+|
T Consensus        60 ------~~~~--~~~v~~~~--------------------~~~~~~~~~~~~~~~~~~vv------~~~g~~~Gvit~~~  105 (109)
T cd04583          60 ------MLED--VFTVQPDA--------------------SLRDVLGLVLKRGPKYVPVV------DEDGKLVGLITRSS  105 (109)
T ss_pred             ------hcCC--ceEECCCC--------------------cHHHHHHHHHHcCCceeeEE------CCCCeEEEEEehHH
Confidence                  1100  11123332                    255678999888877 9998      67899999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       106 l~~  108 (109)
T cd04583         106 LVD  108 (109)
T ss_pred             hhc
Confidence            975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.37  E-value=3.4e-06  Score=70.99  Aligned_cols=106  Identities=11%  Similarity=0.203  Sum_probs=71.2

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.+.++. ++.+.+.+.+++++||++++ ++++|+++.+++.    +...          .+.++.++       
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~----~~~~----------~~~~v~~~-------   59 (110)
T cd04601           3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLR----FETD----------LDKPVSEV-------   59 (110)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHee----eccc----------CCCCHHHh-------
Confidence            456788999998 99999988999999999754 7899999844321    1100          01122222       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +. .......+..                    .++.++++.|++.+.+ ++|+      |++|+++|+||.+|
T Consensus        60 ------~~-~~~~~~~~~~--------------------~~l~~~~~~~~~~~~~~~~Vv------~~~~~~~Gvi~~~d  106 (110)
T cd04601          60 ------MT-PENLLTTVEG--------------------TSLEEALELLHEHKIEKLPVV------DDEGKLKGLITVKD  106 (110)
T ss_pred             ------cc-cCceEEecCC--------------------CCHHHHHHHHHHhCCCeeeEE------cCCCCEEEEEEhhh
Confidence                  10 0000001112                    1356789999999988 8888      67899999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       107 il~  109 (110)
T cd04601         107 IEK  109 (110)
T ss_pred             hhc
Confidence            985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.37  E-value=3.2e-06  Score=71.61  Aligned_cols=109  Identities=16%  Similarity=0.257  Sum_probs=71.6

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.++++. ++++.+.+++++.+||+++  ++++|+++..|+++.+...-..        ..+..+.++       
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~--------~~~~~~~~~-------   63 (112)
T cd04802           2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLK--------PREVPVGEV-------   63 (112)
T ss_pred             CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCC--------cccCCHHHh-------
Confidence            456788999998 9999999999999999985  3899999966554333211000        001111111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+.  ...++...                    ++.++++.|.+.+.+ ++|+      |++ +++|+||.+|
T Consensus        64 ------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~~-~~~Gvi~~~d  108 (112)
T cd04802          64 ------MSTP--LITIDPNA--------------------SLNEAAKLMAKHGIKRLPVV------DDD-ELVGIVTTTD  108 (112)
T ss_pred             ------cCCC--cEEECCCC--------------------CHHHHHHHHHHcCCCeeEEe------eCC-EEEEEEEhhh
Confidence                  1111  11123332                    256779999999988 8888      444 8999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       109 i~~  111 (112)
T cd04802         109 IVM  111 (112)
T ss_pred             hhc
Confidence            985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.36  E-value=3.8e-06  Score=70.67  Aligned_cols=103  Identities=13%  Similarity=0.271  Sum_probs=70.5

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.++++    +...           +.++.++       
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~----~~~~-----------~~~~~~~-------   57 (106)
T cd04638           2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLL----RNPE-----------EEQLALL-------   57 (106)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHH----hccc-----------cchHHHH-------
Confidence            577899999997 89999988899999999754 7899999844432    1110           0011111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +.+.  ..+++..++                    +.++++.|.+.+.+ ++|+      | +|+++|+||.+|
T Consensus        58 ------~~~~--~~~v~~~~~--------------------l~~~~~~~~~~~~~~~~Vv------d-~~~~~G~it~~d  102 (106)
T cd04638          58 ------MTRD--PPTVSPDDD--------------------VKEAAKLMVENNIRRVPVV------D-DGKLVGIVTVAD  102 (106)
T ss_pred             ------hcCC--CceECCCCC--------------------HHHHHHHHHHcCCCEEEEE------E-CCEEEEEEEHHH
Confidence                  1111  111233322                    55678999999988 8888      4 579999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       103 ~~~  105 (106)
T cd04638         103 IVR  105 (106)
T ss_pred             hhc
Confidence            875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.35  E-value=3.4e-06  Score=70.75  Aligned_cols=103  Identities=11%  Similarity=0.175  Sum_probs=70.6

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.++++. ++++.+.+.++.++||+++ .++++|+++..|++    +...            ..+.++       
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~----~~~~------------~~~~~~-------   56 (106)
T cd04582           2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDA-DGQPLGFVTRREAA----RASG------------GCCGDH-------   56 (106)
T ss_pred             CCcEecCCCcHH-HHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHH----Hhcc------------cchhhh-------
Confidence            456788999997 9999998889999999964 37899999854432    2111            011111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            + +.... .++...                    .+.++++.|.+.+.. ++|+      |++|+++|+||..|
T Consensus        57 ------~-~~~~~-~~~~~~--------------------~~~~~~~~~~~~~~~~~~Vv------~~~~~~~Gvi~~~~  102 (106)
T cd04582          57 ------A-EPFKV-TVSVDD--------------------DLRIVLSRMFAHDMSWLPCV------DEDGRYVGEVTQRS  102 (106)
T ss_pred             ------c-ccCCE-EECCCC--------------------CHHHHHHHHHHCCCCeeeEE------CCCCcEEEEEEHHH
Confidence                  1 00001 012222                    256779999999988 8999      78899999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      ++.
T Consensus       103 l~~  105 (106)
T cd04582         103 IAD  105 (106)
T ss_pred             hhc
Confidence            875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.33  E-value=3.4e-06  Score=72.49  Aligned_cols=117  Identities=11%  Similarity=0.216  Sum_probs=72.8

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccc-hhhHHhhhccCCCcccccccch
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDS-KEIAEMEKSKAPMQHDININSN  294 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~-~~~~~~~~~~~~v~~v~~~~~~  294 (492)
                      ++..++.++++. ++.+.+.+.+++++||+++  ++++|+++.+++++.+....... ...........++.++      
T Consensus         2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   72 (121)
T cd04633           2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDI------   72 (121)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHH------
Confidence            456789999998 9999998889999999985  89999999766543322110000 0000000000111111      


Q ss_pred             hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147          295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE  373 (492)
Q Consensus       295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE  373 (492)
                             +.+  ....++...                    ++.++++.|.+.+.+ ++|+      |+ |+++|+||..
T Consensus        73 -------~~~--~~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~Vv------~~-~~~~Gvi~~~  116 (121)
T cd04633          73 -------MTR--PVITIEPDT--------------------SVSDVASLMLENNIGGLPVV------DD-GKLVGIVTRT  116 (121)
T ss_pred             -------ccC--CceEECCCC--------------------cHHHHHHHHHHcCCCcccEE------EC-CEEEEEEEHH
Confidence                   111  111123322                    256789999998888 8888      56 9999999999


Q ss_pred             HHHH
Q 011147          374 DVME  377 (492)
Q Consensus       374 DViE  377 (492)
                      |+++
T Consensus       117 dl~~  120 (121)
T cd04633         117 DILR  120 (121)
T ss_pred             Hhhc
Confidence            9985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.32  E-value=5.1e-06  Score=69.99  Aligned_cols=98  Identities=10%  Similarity=0.137  Sum_probs=67.8

Q ss_pred             EEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhh
Q 011147          219 SLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQR  298 (492)
Q Consensus       219 ~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~  298 (492)
                      .++.++++. ++++.+.+.+++++||+++  ++++|++...++    .+..            ..++.+.          
T Consensus         5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l----~~~~------------~~~~~~~----------   55 (104)
T cd04594           5 KVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDI----ENAT------------YGDVVDY----------   55 (104)
T ss_pred             EECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHH----hhhc------------ccchhhh----------
Confidence            578899998 9999999999999999985  889999983332    2111            0011111          


Q ss_pred             hccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHH
Q 011147          299 QGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVME  377 (492)
Q Consensus       299 ~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViE  377 (492)
                         +..  ...+++.+.                    ++.++++.|++.+.. ++|+      | +|.++|+||.+|+++
T Consensus        56 ---~~~--~~~~v~~~~--------------------~l~~a~~~~~~~~~~~~~Vv------~-~~~~iGvit~~dl~~  103 (104)
T cd04594          56 ---IVR--GIPYVRLTS--------------------TAEEAWEVMMKNKTRWCPVV------D-DGKFKGIVTLDSILD  103 (104)
T ss_pred             ---hhc--CCcEEcCCC--------------------CHHHHHHHHHHcCcceEEEE------E-CCEEEEEEEHHHhhc
Confidence               100  011123332                    256679999999998 8888      4 689999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.32  E-value=3.2e-06  Score=71.62  Aligned_cols=102  Identities=13%  Similarity=0.232  Sum_probs=66.8

Q ss_pred             EeCCCChHHHHHHHHHHcCC-----ccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccch
Q 011147          220 LDINSRLDEKTMGLIISNGH-----SRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSN  294 (492)
Q Consensus       220 l~~~~tl~~e~~~~i~~~~~-----SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~  294 (492)
                      ++.++++. ++++.+.++++     ..+||+++ .++++|+++.+++    .+. .          .+.++.++      
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~~l----~~~-~----------~~~~v~~~------   58 (109)
T cd04606           2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDE-EGRLLGVVSLRDL----LLA-D----------PDTPVSDI------   58 (109)
T ss_pred             ccccCcHH-HHHHHHHhccCcccceeEEEEECC-CCCEEEEEEHHHH----hcC-C----------CcchHHHH------
Confidence            46788897 89998887774     57898864 3789999984332    211 0          01122222      


Q ss_pred             hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147          295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE  373 (492)
Q Consensus       295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE  373 (492)
                             +.+.  ...++...                    ++.++++.|.+.+.+ ++|+      |++|+++|+||.+
T Consensus        59 -------~~~~--~~~i~~~~--------------------~~~~~~~~~~~~~~~~~~Vv------~~~~~~~Gvit~~  103 (109)
T cd04606          59 -------MDTD--VISVSADD--------------------DQEEVARLFEKYDLLALPVV------DEEGRLVGIITVD  103 (109)
T ss_pred             -------hCCC--CeEEcCCC--------------------CHHHHHHHHHHcCCceeeeE------CCCCcEEEEEEhH
Confidence                   1101  11123222                    255678999998888 8998      6789999999999


Q ss_pred             HHHHHH
Q 011147          374 DVMEEL  379 (492)
Q Consensus       374 DViEeL  379 (492)
                      |+++.+
T Consensus       104 dll~~~  109 (109)
T cd04606         104 DVIDVI  109 (109)
T ss_pred             HhhhhC
Confidence            999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.31  E-value=5.6e-06  Score=70.99  Aligned_cols=118  Identities=9%  Similarity=0.124  Sum_probs=71.9

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+++++..-.........-.......++.++       
T Consensus         2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~-------   72 (121)
T cd04584           2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEI-------   72 (121)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHH-------
Confidence            456788999998 99999999999999999764 789999996654332111110000000000000111111       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +..  ....++.+.                    ++.++++.|.+++.+ ++|+      ++ |+++|+||..|
T Consensus        73 ------~~~--~~~~i~~~~--------------------~l~~~~~~~~~~~~~~~~V~------~~-~~~~Gvv~~~d  117 (121)
T cd04584          73 ------MTK--DVITVHPLD--------------------TVEEAALLMREHRIGCLPVV------ED-GRLVGIITETD  117 (121)
T ss_pred             ------hhC--CCeEECCCC--------------------cHHHHHHHHHHcCCCeEEEe------eC-CEEEEEEEHHH
Confidence                  110  111123322                    256678999998887 8888      44 89999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       118 i~~  120 (121)
T cd04584         118 LLR  120 (121)
T ss_pred             hhc
Confidence            985

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.30  E-value=3.6e-06  Score=91.61  Aligned_cols=150  Identities=10%  Similarity=0.156  Sum_probs=97.0

Q ss_pred             ccCHHHHHHHHHhhccccCCCCCC----Ch-hHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCC
Q 011147          165 LLRRAELKTLVDMHGNEAGKGGEL----TH-DETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGH  239 (492)
Q Consensus       165 ~~s~eEL~~lv~~~~~e~~~~g~L----~~-~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~  239 (492)
                      .+++.++-..+...|-    -|.+    +. ++.+.++.+-+.+     +.|++  +.+++++++++. ++++.+.++++
T Consensus        60 ~vt~~~ma~a~a~~Gg----lGvi~~~~~~e~~~~~v~kvk~~e-----~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~  127 (495)
T PTZ00314         60 TVTEHKMAIAMALMGG----IGVIHNNCSIEEQVEEVRKVKRFE-----NGFIM--DPYVLSPNHTVA-DVLEIKEKKGF  127 (495)
T ss_pred             ccccHHHHHHHHHCCC----eEEecCCCCHHHHHHHHhhccccc-----ccccc--CCeecCCCCCHH-HHHHHHHHcCC
Confidence            4667777766653221    1222    22 3456666665444     46653  557899999998 99999999999


Q ss_pred             ccceEEeCC--CCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCC
Q 011147          240 SRVPIYVGT--PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNS  317 (492)
Q Consensus       240 SRiPV~~~~--~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~  317 (492)
                      +++||.+++  .++++|+|+.+|+.     ...+         .+.++.++             +++......++...  
T Consensus       128 s~vpVvd~~~~~gkLvGIVt~~DL~-----~~~~---------~~~~V~di-------------Mt~~~~lvtv~~~~--  178 (495)
T PTZ00314        128 SSILITVDGKVGGKLLGIVTSRDID-----FVKD---------KSTPVSEV-------------MTPREKLVVGNTPI--  178 (495)
T ss_pred             cEEEEEeCCccCCeEEEEEEHHHHh-----hccc---------CCCCHHHh-------------hCCcCCceEeCCCC--
Confidence            999999753  26799999955421     1110         12223333             11000011122222  


Q ss_pred             CCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHH
Q 011147          318 PSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEEL  379 (492)
Q Consensus       318 ~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeL  379 (492)
                                        ++.++++.|++.+.+ ++|+      |++++++|+||..|+++..
T Consensus       179 ------------------sl~eAl~lm~e~~i~~LPVV------d~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        179 ------------------SLEEANEVLRESRKGKLPIV------NDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             ------------------CHHHHHHHHHHcCCCeEEEE------cCCCcEEEEEEehHhhhcc
Confidence                              266789999999999 9999      7889999999999999875

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.29  E-value=2.7e-06  Score=92.68  Aligned_cols=109  Identities=10%  Similarity=0.066  Sum_probs=76.2

Q ss_pred             EEEeCCCChHHHHHHHHHHcCCccceEEeCC--CCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          218 FSLDINSRLDEKTMGLIISNGHSRVPIYVGT--PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       218 ~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~--~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      .++++++++. ++++.+.+++++.+||.+++  .+.++|+|+.+|+.    ....         ..+.+++++       
T Consensus       108 ~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr----~~~~---------~~~~~V~dI-------  166 (502)
T PRK07107        108 SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR----ISRM---------SLDTKVKDF-------  166 (502)
T ss_pred             CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh----cccc---------CCCCCHHHH-------
Confidence            4789999998 99999999999999999852  46899999966531    1100         112233333       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            |++......++..                    .++.++++.|++++.. ++|+      |++|+++|+||..|
T Consensus       167 ------Mt~~~~~itv~~d--------------------~~l~eAl~lM~e~~i~~LPVV------D~~g~LvGIIT~~D  214 (502)
T PRK07107        167 ------MTPFEKLVTANEG--------------------TTLKEANDIIWDHKLNTLPIV------DKNGNLVYLVFRKD  214 (502)
T ss_pred             ------hCCCCCeEEECCC--------------------CcHHHHHHHHHHcCCCEEEEE------cCCCeEEEEEEhHH
Confidence                  1110011111222                    1367789999999999 9999      78899999999999


Q ss_pred             HHHHH
Q 011147          375 VMEEL  379 (492)
Q Consensus       375 ViEeL  379 (492)
                      +++..
T Consensus       215 ilk~~  219 (502)
T PRK07107        215 YDSHK  219 (502)
T ss_pred             HHhcc
Confidence            98864

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.21  E-value=8.8e-06  Score=73.09  Aligned_cols=45  Identities=13%  Similarity=0.288  Sum_probs=38.4

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      ++++++.++++. ++.+.+.+.+++.+||+++  +.++|+++.+++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~   46 (143)
T cd04634           2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILK   46 (143)
T ss_pred             CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHH
Confidence            457789999998 9999999999999999985  78999999666543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.18  E-value=2.7e-06  Score=64.33  Aligned_cols=54  Identities=20%  Similarity=0.378  Sum_probs=47.3

Q ss_pred             cccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHH
Q 011147          207 AKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAV  264 (492)
Q Consensus       207 V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~  264 (492)
                      |+|+|++  ++.+++.++++. ++++.+.+++++++||++++ +.++|+++.+|+++.
T Consensus         1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~   54 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKA   54 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhh
Confidence            5789997  889999999998 99999999999999999754 899999996665443

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.18  E-value=9.2e-06  Score=87.96  Aligned_cols=119  Identities=11%  Similarity=0.124  Sum_probs=84.8

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS  281 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~  281 (492)
                      ++..++.++|+.  +.+++..++++. ++.+.+.+++++.+||.++  +.++|+|..+|        +...       ..
T Consensus        85 v~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rD--------L~~~-------~~  144 (475)
T TIGR01303        85 VAFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSD--------LLGV-------DR  144 (475)
T ss_pred             Hhhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHH--------hhcC-------CC
Confidence            446778889975  667899999998 9999999999999999874  58999999544        2211       00


Q ss_pred             cCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCC
Q 011147          282 KAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLP  360 (492)
Q Consensus       282 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~p  360 (492)
                      ..+++++             +++.  ...++...                    ++.++++.|.+++.+ ++|+      
T Consensus       145 ~~~V~dI-------------Mt~~--litv~~~~--------------------sL~eAl~lM~~~~i~~LPVV------  183 (475)
T TIGR01303       145 FTQVRDI-------------MSTD--LVTAPADT--------------------EPRKAFDLLEHAPRDVAPLV------  183 (475)
T ss_pred             CCCHHHH-------------ccCC--ceEeCCCC--------------------cHHHHHHHHHHcCCCEEEEE------
Confidence            1223332             1111  11123332                    266789999999999 9999      


Q ss_pred             CCCCcEEEEechhHHHHHHcc
Q 011147          361 SVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       361 de~g~vvGIITlEDViEeLlg  381 (492)
                      |++|+++|+||..|+++..-.
T Consensus       184 D~~g~LvGIIT~~DLl~~~~~  204 (475)
T TIGR01303       184 DADGTLAGILTRTGALRATIY  204 (475)
T ss_pred             cCCCeEEEEEEHHHHHHHHhC
Confidence            788999999999999985543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.10  E-value=2.6e-05  Score=65.99  Aligned_cols=109  Identities=6%  Similarity=0.134  Sum_probs=69.9

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      ++..++.++++. ++.+.+.+.++..++|.++  ++++|++...++++.+... ..   ..    .+.++.++       
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~-~~---~~----~~~~v~~~-------   63 (112)
T cd04625           2 TIYTVAPETLLS-EAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQH-GA---GV----LDTTVRAI-------   63 (112)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhc-CC---ch----hcCCHHHH-------
Confidence            567789999998 8999988888878877753  7899999966543322211 00   00    01122222       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhH
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLED  374 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlED  374 (492)
                            +. .. ...++...                    ++.++++.|.+.+.. ++|+      + +|+++|+||..|
T Consensus        64 ------~~-~~-~~~v~~~~--------------------~l~~a~~~m~~~~~~~l~Vv------~-~~~~~Gvvt~~d  108 (112)
T cd04625          64 ------MN-PE-PIVASPDD--------------------SIDEVRRLMVERHLRYLPVL------D-GGTLLGVISFHD  108 (112)
T ss_pred             ------hC-CC-CeEECCCC--------------------CHHHHHHHHHHcCCCeeeEE------E-CCEEEEEEEHHH
Confidence                  11 00 01112221                    366789999998888 8888      4 589999999999


Q ss_pred             HHH
Q 011147          375 VME  377 (492)
Q Consensus       375 ViE  377 (492)
                      +++
T Consensus       109 l~~  111 (112)
T cd04625         109 VAK  111 (112)
T ss_pred             hhc
Confidence            975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.10  E-value=1.3e-05  Score=68.62  Aligned_cols=111  Identities=12%  Similarity=0.105  Sum_probs=68.8

Q ss_pred             eEEEeCCCChHHHHHHHHHHcC-CccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchh
Q 011147          217 IFSLDINSRLDEKTMGLIISNG-HSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNL  295 (492)
Q Consensus       217 v~~l~~~~tl~~e~~~~i~~~~-~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~  295 (492)
                      +..++.++++. ++++.+.+.+ ++++||.++  ++++|++..+++++.+.+..     ..+. ..+..+.++       
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~-----~~~~-~~~~~v~~~-------   66 (119)
T cd04598           3 APTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPY-----GRAL-YGKKPVSEV-------   66 (119)
T ss_pred             cCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchh-----hHHH-HcCCcHHHh-------
Confidence            44678899998 9999988877 899999986  89999998655433222110     0000 001122222       


Q ss_pred             hhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCc----ceEEecccCCCCCCCcEEEEec
Q 011147          296 KQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDV----KISKEELESLPSVDEEVIGIIT  371 (492)
Q Consensus       296 ~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~----~~lVv~~~~~pde~g~vvGIIT  371 (492)
                            +...  ...++.+.                    .+.++++.|.+.+.    ..+|+      +++|+++|+||
T Consensus        67 ------~~~~--~~~v~~~~--------------------~~~~~~~~~~~~~~~~~~~~~vv------~~~~~~~Gvvs  112 (119)
T cd04598          67 ------MDPD--PLIVEADT--------------------PLEEVSRLATGRDSQNLYDGFIV------TEEGRYLGIGT  112 (119)
T ss_pred             ------cCCC--cEEecCCC--------------------CHHHHHHHHHcCCcccccccEEE------eeCCeEEEEEE
Confidence                  1111  11123322                    24567888887764    24567      67899999999


Q ss_pred             hhHHHH
Q 011147          372 LEDVME  377 (492)
Q Consensus       372 lEDViE  377 (492)
                      ..|+++
T Consensus       113 ~~di~~  118 (119)
T cd04598         113 VKDLLR  118 (119)
T ss_pred             HHHHhc
Confidence            999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.10  E-value=3.5e-05  Score=82.71  Aligned_cols=135  Identities=17%  Similarity=0.255  Sum_probs=96.7

Q ss_pred             CCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCC---ccceEE--eCCCCceEEEEEccch
Q 011147          187 ELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGH---SRVPIY--VGTPTNIIGAILGHSH  261 (492)
Q Consensus       187 ~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~---SRiPV~--~~~~d~IvGiv~~~d~  261 (492)
                      .++++|++.++..+...+-+++.+|+.  +.+++..+.|++ ++++.+++.+.   +++.+|  +. .+.++|++.    
T Consensus       114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~-~~~L~Gvvs----  185 (451)
T COG2239         114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDE-KGKLLGVVS----  185 (451)
T ss_pred             hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECC-ccceEEEee----
Confidence            378899999999999999999999995  889999999998 99999995543   455555  43 356999998    


Q ss_pred             HHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHH
Q 011147          262 MAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCL  341 (492)
Q Consensus       262 m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l  341 (492)
                          ++++--.+  +     +.+++++             |. .. +..++..+                    |.+++.
T Consensus       186 ----l~~Ll~a~--~-----~~~i~~i-------------m~-~~-~~~V~~~~--------------------dqeevA  219 (451)
T COG2239         186 ----LRDLLTAE--P-----DELLKDL-------------ME-DD-VVSVLADD--------------------DQEEVA  219 (451)
T ss_pred             ----HHHHhcCC--c-----HhHHHHH-------------hc-cc-ceeecccC--------------------CHHHHH
Confidence                33332111  1     1122222             11 11 11122221                    345678


Q ss_pred             HHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          342 KKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       342 ~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      +.|++.+.- ++||      |+++..+|+||.+||++.+-.
T Consensus       220 ~~~~~ydl~a~PVV------d~~~~LiG~itiDDiidvi~e  254 (451)
T COG2239         220 RLFEKYDLLAVPVV------DEDNRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             HHHHHhCCeecceE------CCCCceeeeeeHHHHHHHHHH
Confidence            899999888 9999      899999999999999988843

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.05  E-value=1.6e-05  Score=79.10  Aligned_cols=113  Identities=11%  Similarity=0.126  Sum_probs=77.8

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      .+|+|+|.+. ++..++.++++. ++++.+.+.+++.+||.+++ ++++|++...|+.+......          ..+.+
T Consensus       155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~----------~~~~~  221 (268)
T TIGR00393       155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGG----------SLKSE  221 (268)
T ss_pred             hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCC----------cccCc
Confidence            6899999864 267899999998 99999988999999999753 78999999766543211100          01122


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      ++++             +.+....  ++...                    ++.++++.|.+.+.+ ++|+      |++
T Consensus       222 v~~i-------------m~~~~~~--v~~~~--------------------~l~~a~~~m~~~~~~~lpVv------d~~  260 (268)
T TIGR00393       222 VRDF-------------MTLGPKT--FKLDA--------------------LLLEALEFLERRKITSLVVV------DDH  260 (268)
T ss_pred             HHHh-------------CCCCCeE--ECCCC--------------------cHHHHHHHHHHcCCcEEEEE------CCC
Confidence            3332             1111111  12222                    366789999999988 9999      778


Q ss_pred             CcEEEEec
Q 011147          364 EEVIGIIT  371 (492)
Q Consensus       364 g~vvGIIT  371 (492)
                      |+++|+|+
T Consensus       261 g~l~GvI~  268 (268)
T TIGR00393       261 NKVLGVLH  268 (268)
T ss_pred             CeEEEEEC
Confidence            99999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.96  E-value=1.5e-05  Score=86.51  Aligned_cols=148  Identities=18%  Similarity=0.265  Sum_probs=91.2

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCC----ceEEEEEccchHHHHHHhhccchhhHH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPT----NIIGAILGHSHMAVVVKCKNDSKEIAE  277 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d----~IvGiv~~~d~m~~vvk~l~~~~~~~~  277 (492)
                      +++.+|+|+|.+  ++++++.-+.+. .+++.+..+.|..|||+|+..+    .+.|++.++ |+-.++|.....++.+.
T Consensus       579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRs-hl~vlL~~~~f~~~~~~  654 (762)
T KOG0474|consen  579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRS-HLLVLLKKRVFVEESRS  654 (762)
T ss_pred             hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHH-HHHHHHHhhhhhccCcc
Confidence            578899999997  999999999998 8999999999999999987554    467777643 44444444322211111


Q ss_pred             hhhccCCCcccccc---cchhh------hhhcc--cc------ccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHH
Q 011147          278 MEKSKAPMQHDINI---NSNLK------QRQGE--LK------GNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLC  340 (492)
Q Consensus       278 ~~~~~~~v~~v~~~---~~~~~------~~~~~--~~------~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~  340 (492)
                      .+  +.+.++.-+.   .++..      .+..+  +.      -+..|+.+|++++                    +..+
T Consensus       655 ~~--~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mS--------------------l~k~  712 (762)
T KOG0474|consen  655 TF--DLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMS--------------------LAKA  712 (762)
T ss_pred             cc--CcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccc--------------------hHHH
Confidence            11  1111100000   00000      00000  00      1122333343332                    5567


Q ss_pred             HHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHH-HHHcc
Q 011147          341 LKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVM-EELLQ  381 (492)
Q Consensus       341 l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDVi-EeLlg  381 (492)
                      +..|++-.-+ .+|+      +....++||+|..|++ ++.+|
T Consensus       713 ~~lFR~lGLRhLlVv------~~~~~~~gilTR~D~~~~~~l~  749 (762)
T KOG0474|consen  713 FILFRQLGLRHLLVV------PKTNRVVGILTRKDLARYRILG  749 (762)
T ss_pred             HHHHHHhcceeEEEe------cCCCceeEEEehhhhhhHHHhc
Confidence            8999998888 9999      5667789999999999 66666

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.92  E-value=7.8e-05  Score=63.30  Aligned_cols=113  Identities=19%  Similarity=0.336  Sum_probs=75.1

Q ss_pred             ccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcc
Q 011147          208 KDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQH  287 (492)
Q Consensus       208 ~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~  287 (492)
                      +++|.  .++.++..+.++. ++...+.+++++++||.++  +.++|++..+|+++.+.......          .++.+
T Consensus         2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~----------~~v~~   66 (117)
T COG0517           2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRL----------LPVKE   66 (117)
T ss_pred             ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCcc----------ccHHH
Confidence            34555  5778999999998 9999999999999999975  36999999666544333221100          01221


Q ss_pred             cccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhH-cCcc-eEEecccCCCCCCC-
Q 011147          288 DININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWER-QDVK-ISKEELESLPSVDE-  364 (492)
Q Consensus       288 v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~-~~~~-~lVv~~~~~pde~g-  364 (492)
                      +             +.++  ...+...                    .++.++.+.|.+ .+.+ ++|+      ++++ 
T Consensus        67 v-------------~~~~--~~~~~~~--------------------~~~~~~~~~m~~~~~~~~lpVv------~~~~~  105 (117)
T COG0517          67 V-------------MTKP--VVTVDPD--------------------TPLEEALELMVERHKIRRLPVV------DDDGG  105 (117)
T ss_pred             h-------------ccCC--cEEECCC--------------------CCHHHHHHHHHHHcCcCeEEEE------ECCCC
Confidence            1             1100  0111111                    125567899998 5777 9999      5665 


Q ss_pred             cEEEEechhHHH
Q 011147          365 EVIGIITLEDVM  376 (492)
Q Consensus       365 ~vvGIITlEDVi  376 (492)
                      +++||||..|++
T Consensus       106 ~lvGivt~~di~  117 (117)
T COG0517         106 KLVGIITLSDIL  117 (117)
T ss_pred             eEEEEEEHHHcC
Confidence            999999999974

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.80  E-value=5.6e-05  Score=81.51  Aligned_cols=126  Identities=13%  Similarity=0.177  Sum_probs=92.9

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhh
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEK  280 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~  280 (492)
                      +|--.+|.++|+-  +.+.+++..++. ++..++.+.|.|-+-|.++ .+...|||+.+|.+..|+.+-.+.        
T Consensus       145 e~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g~~~--------  212 (610)
T COG2905         145 EFILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADGRSK--------  212 (610)
T ss_pred             hHHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcCCCc--------
Confidence            3445678888884  667899999997 9999999999997777764 477899999999998888764432        


Q ss_pred             ccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCC
Q 011147          281 SKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESL  359 (492)
Q Consensus       281 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~  359 (492)
                       ..+|.++             |+.+...  +...                    .-+.+|+-.|-+++.| ++|.     
T Consensus       213 -~~~V~ev-------------mT~p~~s--vd~~--------------------~~~feAml~m~r~~I~hl~V~-----  251 (610)
T COG2905         213 -TQKVSEV-------------MTSPVIS--VDRG--------------------DFLFEAMLMMLRNRIKHLPVT-----  251 (610)
T ss_pred             -ccchhhh-------------hccCcee--ecCc--------------------chHHHHHHHHHHhCCceeeee-----
Confidence             2345544             2211111  1111                    2367788899999999 8888     


Q ss_pred             CCCCCcEEEEechhHHHHHHcc
Q 011147          360 PSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       360 pde~g~vvGIITlEDViEeLlg  381 (492)
                        ++|.++||||+.||+.-.-+
T Consensus       252 --e~gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         252 --EDGQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             --cCCeeeEEeeHHHHHHhhCC
Confidence              89999999999999876654

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.80  E-value=0.0002  Score=79.03  Aligned_cols=60  Identities=12%  Similarity=0.188  Sum_probs=50.9

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHH
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVK  267 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk  267 (492)
                      ..+|+|+|++  ++.+++.++++. ++++.+.+++++++||++++ ++++|+|..+|+.+.+.+
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~  126 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMD  126 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHh
Confidence            4689999985  778899999998 99999999999999999753 789999998776665554

>PF00571 CBS: CBS domain CBS domain web page

Probab=97.27  E-value=0.00057  Score=51.41  Aligned_cols=39  Identities=23%  Similarity=0.454  Sum_probs=35.5

Q ss_pred             HHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          337 LHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       337 l~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      +.++++.|++.+.+ ++|+      |++|+++|+||..|+++.+.+
T Consensus        18 l~~~~~~~~~~~~~~~~V~------d~~~~~~G~is~~dl~~~l~~   57 (57)
T PF00571_consen   18 LEEALEIMRKNGISRLPVV------DEDGKLVGIISRSDLLKALLD   57 (57)
T ss_dssp             HHHHHHHHHHHTSSEEEEE------STTSBEEEEEEHHHHHHHHHG
T ss_pred             HHHHHHHHHHcCCcEEEEE------ecCCEEEEEEEHHHHHhhhhC
Confidence            66789999999999 9999      799999999999999998864

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.22  E-value=0.0016  Score=68.82  Aligned_cols=120  Identities=13%  Similarity=0.153  Sum_probs=79.0

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC-Ccccccccch
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP-MQHDININSN  294 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~-v~~v~~~~~~  294 (492)
                      .+..++.+.++. ++++.+...+.|.+||++.. ++.+|+....|.+    ....+..+...    +.. +.+.      
T Consensus       238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~----~l~~~~~~~~~----~~~~l~~~------  301 (381)
T KOG1764|consen  238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVI----HLAREGTYNNL----DLSCLSEA------  301 (381)
T ss_pred             hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-Cceecceehhhhh----hhhhcCccCcc----chhHHHHH------
Confidence            588899999997 99999999999999999754 6669999865532    22111111110    000 1111      


Q ss_pred             hhhhhccccccccccccC-CCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEech
Q 011147          295 LKQRQGELKGNVQNEQFN-AYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITL  372 (492)
Q Consensus       295 ~~~~~~~~~~~~~~~~vp-~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITl  372 (492)
                            ...|+...  -+ -+...++                .|+.++.++.+++.| +.||      |++|.++|+||+
T Consensus       302 ------~~~~~~~~--~~vvtc~~~s----------------sL~~vi~~lv~~~vHRl~VV------d~~~~l~GvvSL  351 (381)
T KOG1764|consen  302 ------LSHRPIRF--EGVVTCRPTS----------------TLAEVIDKLVAHRVHRLWVV------DEDGVLVGVISL  351 (381)
T ss_pred             ------hhhccccc--CccEEEeecc----------------hHHHHHHHHHhcCceEEEEE------cCCCcEEEEeeH
Confidence                  00011100  00 0011111                267789999999999 9999      789999999999


Q ss_pred             hHHHHHHcc
Q 011147          373 EDVMEELLQ  381 (492)
Q Consensus       373 EDViEeLlg  381 (492)
                      .|++.-++.
T Consensus       352 sDil~~l~~  360 (381)
T KOG1764|consen  352 SDILSYLVL  360 (381)
T ss_pred             HHHHHHHHh
Confidence            999999986

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=96.92  E-value=0.0014  Score=55.56  Aligned_cols=56  Identities=20%  Similarity=0.287  Sum_probs=47.7

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +.++.++|.|..++..++.++++. ++++.+.+++.+++||+++ .++++|+++.+|+
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di  111 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVED-SGQVIGLITEADL  111 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcC-CCcEEEEEeccce
Confidence            467899998766677899999998 9999999999999999975 3689999996654

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=96.84  E-value=0.002  Score=54.25  Aligned_cols=58  Identities=19%  Similarity=0.261  Sum_probs=47.2

Q ss_pred             ccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          200 LDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       200 l~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      .+....++.++|.+  ++.+++.++++. ++++.+.+++.+++||++++ ++++|+|+..|+
T Consensus        54 ~~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di  111 (114)
T cd04604          54 LDILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDL  111 (114)
T ss_pred             CccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHh
Confidence            34455679999986  456799999998 99999999999999999743 789999985543

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=96.84  E-value=0.0016  Score=55.38  Aligned_cols=54  Identities=7%  Similarity=0.108  Sum_probs=45.6

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +.++.++|..  +..++..++++. ++++.+.+++.+++||++++ ++++|+|+.+|+
T Consensus        55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di  108 (111)
T cd04603          55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYEREL  108 (111)
T ss_pred             ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHh
Confidence            3468899964  567899999997 99999999999999999754 689999996654

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.83  E-value=0.002  Score=55.37  Aligned_cols=59  Identities=15%  Similarity=0.180  Sum_probs=48.2

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCC--CceEEEEEccch
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTP--TNIIGAILGHSH  261 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~--d~IvGiv~~~d~  261 (492)
                      +.+.+++++|+.-.++.+++.++++. ++++.+.++++.++||++++.  ++++|+|+..|+
T Consensus        55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l  115 (118)
T cd04617          55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNI  115 (118)
T ss_pred             ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhe
Confidence            34667889997434678999999997 999999999999999998643  579999985543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.54  E-value=0.003  Score=53.84  Aligned_cols=56  Identities=13%  Similarity=0.238  Sum_probs=46.5

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      .+.+++++|..  ++.+++.++++. ++++.+.+++..++||++++ ++++|+|+.+|++
T Consensus        57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~  112 (114)
T cd04619          57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDAL  112 (114)
T ss_pred             ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhc
Confidence            34578899964  677899999998 99999999999999999753 6899999966543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=96.49  E-value=0.017  Score=51.70  Aligned_cols=48  Identities=13%  Similarity=0.158  Sum_probs=40.2

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHH
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVV  265 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~v  265 (492)
                      ++..++.++++. ++++.+.+++++.+||+++ .++++|+|..+|+++..
T Consensus         2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~-~g~l~Givt~~Dl~~~~   49 (133)
T cd04592           2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDS-DDFLEGILTLGDIQRFL   49 (133)
T ss_pred             CceEECCCCCHH-HHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHH
Confidence            567899999998 9999999999999999975 37899999977655443

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.44  E-value=0.0049  Score=51.66  Aligned_cols=53  Identities=15%  Similarity=0.356  Sum_probs=45.3

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +.+++++|.+  ++.+++.++++. ++++.+.+.+++++||+++  ++++|+|...|+
T Consensus        58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di  110 (113)
T cd04623          58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDV  110 (113)
T ss_pred             ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHh
Confidence            5678999965  678899999998 9999999999999999975  789999985543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.43  E-value=0.0028  Score=55.11  Aligned_cols=58  Identities=19%  Similarity=0.231  Sum_probs=44.4

Q ss_pred             cccccccccccCcceEEEe----CCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          203 TQKTAKDAMTAMSKIFSLD----INSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~----~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      .+.+++++|.+...+..++    .++++. ++++.+.+++.+++||++++.++++|+|+.+|+
T Consensus        62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di  123 (126)
T cd04640          62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDI  123 (126)
T ss_pred             hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHH
Confidence            4567899997644444443    578887 999999999999999998643579999985543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=96.42  E-value=0.0058  Score=61.67  Aligned_cols=69  Identities=12%  Similarity=0.177  Sum_probs=59.7

Q ss_pred             hcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhc
Q 011147          198 GALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKN  270 (492)
Q Consensus       198 ~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~  270 (492)
                      +.-.+.+-+||.+|++  .+.++.++++.. |++-.+.+.|+..+||.|+ .+.++|||...|+|+++.+...
T Consensus       308 rlr~~~~~~vk~imt~--~v~tv~pdtpa~-~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~r~~~  376 (382)
T COG3448         308 RLRFLRPPTVKGIMTT--PVVTVRPDTPAV-ELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALYRNWS  376 (382)
T ss_pred             HhhccCCCcccccccC--cceeecCCCcHH-HHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHHHHHH
Confidence            3344678899999996  678999999997 9999999999999999985 4899999999999999988753

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.33  E-value=0.022  Score=62.70  Aligned_cols=62  Identities=13%  Similarity=0.237  Sum_probs=44.1

Q ss_pred             ccccccccccCc---ceEEEeCC-CChHHHHHHHHHHcCCccceEE-eCCCCceEEEEEccchHHHHH
Q 011147          204 QKTAKDAMTAMS---KIFSLDIN-SRLDEKTMGLIISNGHSRVPIY-VGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       204 ~~~V~diMtPr~---~v~~l~~~-~tl~~e~~~~i~~~~~SRiPV~-~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      +....++|-|+.   ....+..+ .+++ |....+.++.|+.|||. +++.+..+|++.++++.-.+.
T Consensus       542 ~t~~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~  608 (696)
T KOG0475|consen  542 STLAIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAIL  608 (696)
T ss_pred             cchhhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHh
Confidence            344556666643   24444444 7897 99999999999999998 556677999999777654443

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=96.32  E-value=0.0065  Score=52.47  Aligned_cols=50  Identities=16%  Similarity=0.208  Sum_probs=43.4

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEc
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILG  258 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~  258 (492)
                      .+|+|+|.+  ++..++.++++. ++++.+.+.++..+||+++ .++++|+|..
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~-~~~l~Givt~  107 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDD-DGTPAGIITL  107 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECC-CCeEEEEEEH
Confidence            679999986  667799999998 9999999999999999975 3689999983

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=96.32  E-value=0.006  Score=51.76  Aligned_cols=56  Identities=14%  Similarity=0.296  Sum_probs=47.0

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +.+.++.++|.+  +..+++.++++. ++++.+.+.+++++||+++ .++++|+|+.+|+
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di  119 (122)
T cd04585          64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDD-QGRLVGIITESDL  119 (122)
T ss_pred             hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECC-CCcEEEEEEHHHh
Confidence            456789999975  678899999998 9999999999999999975 3689999985543

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.20  E-value=0.0072  Score=66.15  Aligned_cols=58  Identities=17%  Similarity=0.249  Sum_probs=50.5

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      ..+.+|+|+|+|..++++++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Di  215 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDY  215 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHH
Confidence            45678999999877889999999998 9999999999999999974 3689999996654

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=96.18  E-value=0.0097  Score=49.92  Aligned_cols=55  Identities=15%  Similarity=0.215  Sum_probs=46.3

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      ..++.++|.+  ++.+++.++++. ++++.+.+.++.++||++++.++++|++..+|+
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di  111 (114)
T cd04613          57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDL  111 (114)
T ss_pred             cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHh
Confidence            4789999986  567899999998 999999999999999997424789999996554

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.17  E-value=0.0099  Score=49.98  Aligned_cols=53  Identities=17%  Similarity=0.303  Sum_probs=44.6

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +.+++++|.+  ++.+++.++++. ++++.+.+++..++||.++  ++++|+++.+|+
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl  109 (112)
T cd04625          57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDV  109 (112)
T ss_pred             cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHh
Confidence            4578999964  567899999997 9999999999999999973  789999995554

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.16  E-value=0.0077  Score=53.57  Aligned_cols=54  Identities=24%  Similarity=0.350  Sum_probs=45.9

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      ..+.+++++|++  ++.+++.++++. ++++.+.+.++.++||.++  ++++|+|...+
T Consensus        78 ~~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~d  131 (135)
T cd04621          78 EVPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTD  131 (135)
T ss_pred             cccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHH
Confidence            346689999975  567899999998 9999999999999999975  78999998544

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.14  E-value=0.0097  Score=50.02  Aligned_cols=44  Identities=14%  Similarity=0.141  Sum_probs=38.7

Q ss_pred             eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          217 IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       217 v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +.++.+++++. ++++.|.+++..++||.+++.++++|++..+|+
T Consensus        52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~   95 (98)
T cd04618          52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRI   95 (98)
T ss_pred             eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhh
Confidence            67899999998 999999999999999998654789999996654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.12  E-value=0.0078  Score=52.68  Aligned_cols=54  Identities=17%  Similarity=0.348  Sum_probs=45.5

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      ...++.++|.+  ++..++.++++. ++++.+.+.+++++||.++  +.++|++..+|+
T Consensus        76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl  129 (132)
T cd04636          76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDI  129 (132)
T ss_pred             cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHh
Confidence            34478899974  678899999998 9999999999999999975  789999986553

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.10  E-value=0.0075  Score=51.21  Aligned_cols=54  Identities=17%  Similarity=0.222  Sum_probs=45.3

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      .+.+++++|..  ++.+++.++++. ++++.+.+.+..++||+++  +.++|+|..+|+
T Consensus        58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl  111 (114)
T cd04630          58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDI  111 (114)
T ss_pred             CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHh
Confidence            34578899953  678899999998 9999999999999999975  789999985543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=96.07  E-value=0.0098  Score=50.29  Aligned_cols=54  Identities=11%  Similarity=0.214  Sum_probs=44.8

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +.+++++|.+  .+.+++.++++. ++++.+.+++.+++||+++ .++++|+|...|+
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di  110 (113)
T cd04607          57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDE-EGRVVGLATLDDL  110 (113)
T ss_pred             CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHh
Confidence            3568899965  567899999998 9999999999999999974 3789999985543

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.01  E-value=0.012  Score=49.56  Aligned_cols=54  Identities=17%  Similarity=0.401  Sum_probs=45.2

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      .+.+++++|.+  ++.++..++++. ++++.+.+++...+||++++  +++|+++..|+
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di  109 (112)
T cd04802          56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDI  109 (112)
T ss_pred             ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhh
Confidence            45578899975  577889999998 99999999999999999753  89999996554

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.98  E-value=0.0093  Score=50.91  Aligned_cols=55  Identities=13%  Similarity=0.334  Sum_probs=46.5

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +.+.++.++|.+  +..+++.++++. ++++.+.+.+.+++||+++  ++++|++..+|+
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl  118 (121)
T cd04633          64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDI  118 (121)
T ss_pred             hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHh
Confidence            456678899964  677899999998 9999999999999999975  789999985543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=95.95  E-value=0.013  Score=48.77  Aligned_cols=51  Identities=12%  Similarity=0.194  Sum_probs=42.6

Q ss_pred             ccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          206 TAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       206 ~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      .+.++|.+  ...+++.++++. ++++.+.+.+++.+||++++ ++++|+++.++
T Consensus        52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~  102 (106)
T cd04582          52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRS  102 (106)
T ss_pred             chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHH
Confidence            47888976  346789999997 99999999999999999753 68999998544

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=95.94  E-value=0.014  Score=59.95  Aligned_cols=57  Identities=19%  Similarity=0.243  Sum_probs=48.5

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      .+.+.+|+|+|++  ++.+++.++++. ++++.+.+++..++||.++  ++++|+|...|++
T Consensus       265 ~~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil  321 (326)
T PRK10892        265 DLRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLL  321 (326)
T ss_pred             CcccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhH
Confidence            3456789999986  678899999998 9999999999999999974  6899999966543

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=95.93  E-value=0.011  Score=49.06  Aligned_cols=54  Identities=15%  Similarity=0.296  Sum_probs=44.4

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +..++++|.+  ...+++.++++. ++++.+.+++..++||++++ +.++|++..+++
T Consensus        51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di  104 (107)
T cd04610          51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDV  104 (107)
T ss_pred             cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHh
Confidence            3568999975  457789999998 99999999999999999753 689999985543

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=95.90  E-value=0.013  Score=49.76  Aligned_cols=54  Identities=13%  Similarity=0.332  Sum_probs=44.4

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCC-CCceEEEEEccch
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGT-PTNIIGAILGHSH  261 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~-~d~IvGiv~~~d~  261 (492)
                      .++.++|.+  ++.+++.++++. ++++.+.+++..++||.+++ .++++|+|+..|+
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di  112 (115)
T cd04593          58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENV  112 (115)
T ss_pred             ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHh
Confidence            347788864  677899999998 99999999999999999754 2579999985554

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=95.90  E-value=0.014  Score=49.08  Aligned_cols=52  Identities=10%  Similarity=0.201  Sum_probs=44.0

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      .++.++|.+  ...+++.++++. ++++.+.+++..++||++++ ++++|+|+.+|
T Consensus        58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~d  109 (113)
T cd04587          58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTK  109 (113)
T ss_pred             CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHH
Confidence            678899965  567799999998 99999999999999999754 78999998554

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.88  E-value=0.012  Score=49.92  Aligned_cols=55  Identities=15%  Similarity=0.241  Sum_probs=44.0

Q ss_pred             ccccccccccCcceEEEeCC--CChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          204 QKTAKDAMTAMSKIFSLDIN--SRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~--~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      +.++.++|.+  ++.+++.+  +++. ++++.+.+++..++||++++ ++++|+|+..|++
T Consensus        57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~  113 (115)
T cd04620          57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIR  113 (115)
T ss_pred             ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhh
Confidence            4678899965  56677776  6786 89999999999999999753 7899999966543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=95.84  E-value=0.012  Score=50.38  Aligned_cols=57  Identities=16%  Similarity=0.350  Sum_probs=47.5

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      ....++.++|..  .+.+++.++++. ++++.+.+.+.+++||.++ .++++|+++.+|++
T Consensus        66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~  122 (124)
T cd04600          66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLI  122 (124)
T ss_pred             cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhh
Confidence            456679999975  678899999998 9999999999999999974 47899999966543

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=95.84  E-value=0.012  Score=64.42  Aligned_cols=61  Identities=8%  Similarity=0.185  Sum_probs=51.7

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVV  265 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~v  265 (492)
                      .+.+|+++|++..++.+++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+++.+
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~  221 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVK  221 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHh
Confidence            4678999999876788999999998 9999999999999999974 36899999976654433

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=95.83  E-value=0.0097  Score=50.68  Aligned_cols=55  Identities=13%  Similarity=0.224  Sum_probs=46.7

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      .....+++++|.+  .+.+++.+++++ ++++.+.+.+++.+||+++  ++++|+++.+|
T Consensus        63 ~~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~d  117 (121)
T cd04584          63 LLLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETD  117 (121)
T ss_pred             hhcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHH
Confidence            3556779999976  668899999998 9999999999999999975  78999998544

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=95.82  E-value=0.031  Score=58.80  Aligned_cols=152  Identities=9%  Similarity=0.113  Sum_probs=95.1

Q ss_pred             cccCHHHHHHHHHhhccccCCCCCC-ChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccc
Q 011147          164 ALLRRAELKTLVDMHGNEAGKGGEL-THDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRV  242 (492)
Q Consensus       164 ~~~s~eEL~~lv~~~~~e~~~~g~L-~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRi  242 (492)
                      ..+++.|.-..+..++--+-=...- .+++..+++.+=.|++--+   +    +.+.++++.++. ++++.-..+||+.+
T Consensus        71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~~---~----~p~v~sp~~tvg-~v~~~k~~~gF~g~  142 (503)
T KOG2550|consen   71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGFI---N----NPIVISPTTTVG-EVKEAKEKHGFSGI  142 (503)
T ss_pred             cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhcccc---c----CCcccCCcccch-hhhhhccccccccc
Confidence            3567888777666543111001111 4567788888877766433   2    335588899997 99999999999999


Q ss_pred             eEEeCC--CCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCc
Q 011147          243 PIYVGT--PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSV  320 (492)
Q Consensus       243 PV~~~~--~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~  320 (492)
                      ||-++.  ...++|+|..+|+     +.+.+.         ...+.++             ++ +.. +..|....    
T Consensus       143 pvTe~g~~~~KLvG~vtsrdi-----~f~~~~---------~~~~~~v-------------mt-~~~-~~~~~gi~----  189 (503)
T KOG2550|consen  143 PVTEDGKRGSKLVGIITSRDI-----QFLEDN---------SLLVSDV-------------MT-KNP-VTGAQGIT----  189 (503)
T ss_pred             ccccCCcccceeEEEEehhhh-----hhhhcc---------cchhhhh-------------cc-ccc-cccccccc----
Confidence            999632  2569999997763     333211         1223332             11 111 21243322    


Q ss_pred             ccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHH
Q 011147          321 ISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEE  378 (492)
Q Consensus       321 ~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEe  378 (492)
                                      +.++-+.+++.+-. ++||      |++|+++-||+..|+++.
T Consensus       190 ----------------l~~~neiL~~~kkGkl~iv------~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  190 ----------------LKEANEILKKIKKGKLPVV------DDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             ----------------HHHHHHHHHhhhcCCccee------ccCCceeeeeehhhhhhh
Confidence                            34445566666666 8888      799999999999999764

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=95.76  E-value=0.023  Score=39.31  Aligned_cols=42  Identities=14%  Similarity=0.426  Sum_probs=35.1

Q ss_pred             eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          217 IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       217 v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      +.+++.++++. ++++.+.+.+++++||++++ ++++|++..++
T Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~   43 (49)
T smart00116        2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRD   43 (49)
T ss_pred             ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHH
Confidence            35678889997 99999999999999999754 68999998444

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=95.76  E-value=0.024  Score=47.85  Aligned_cols=52  Identities=19%  Similarity=0.406  Sum_probs=44.3

Q ss_pred             ccccccccCcceEEEeCCCChHHHHHHHHHH-cCCccceEEeCCCCceEEEEEccc
Q 011147          206 TAKDAMTAMSKIFSLDINSRLDEKTMGLIIS-NGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       206 ~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~-~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      .++++|+.  ++.++..+.++. ++.+.+.+ +++.++||.+++..+++|+++.+|
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~d  115 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDDGGKLVGIITLSD  115 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHH
Confidence            79999985  778899999998 99999999 799999999863238999998544

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=95.73  E-value=0.11  Score=55.48  Aligned_cols=120  Identities=13%  Similarity=0.105  Sum_probs=75.4

Q ss_pred             cccccccccCcc-eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccC
Q 011147          205 KTAKDAMTAMSK-IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKA  283 (492)
Q Consensus       205 ~~V~diMtPr~~-v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~  283 (492)
                      .++.++|.+... ......+.... ++++.+...+.+.+.|.++ .++++|++..+++    .+.....          .
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~----~~~~~~~----------~  337 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIER-GNKFVGAVSIDSL----KTALTQQ----------Q  337 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcC-CCcEEEEEeHHHH----HhhhhcC----------C
Confidence            567788853221 12233555666 8899999999999999975 4789999984332    2211110          0


Q ss_pred             CCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcceEEecccCCCCCC
Q 011147          284 PMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVD  363 (492)
Q Consensus       284 ~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~~lVv~~~~~pde~  363 (492)
                      .+.+.             +......  ++..                    +++.+++..+.+....++|+      |++
T Consensus       338 ~~~~~-------------~~~~~~~--~~~~--------------------~~~~~~~~~~~~~~~~~~v~------~~~  376 (400)
T PRK10070        338 GLDAA-------------LIDAPLA--VDAQ--------------------TPLSELLSHVGQAPCAVPVV------DED  376 (400)
T ss_pred             chhhh-------------hccCCce--eCCC--------------------CCHHHHHHHHHhCCCcEEEE------CCC
Confidence            11111             0000000  1222                    23667788888755448888      789


Q ss_pred             CcEEEEechhHHHHHHcc
Q 011147          364 EEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       364 g~vvGIITlEDViEeLlg  381 (492)
                      |.++|+||..+++..|-+
T Consensus       377 ~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        377 QQYVGIISKGMLLRALDR  394 (400)
T ss_pred             CcEEEEEEHHHHHHHHHh
Confidence            999999999999999976

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=95.72  E-value=0.018  Score=48.07  Aligned_cols=54  Identities=15%  Similarity=0.256  Sum_probs=42.6

Q ss_pred             ccccccccccCcceEEEeC-CCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          204 QKTAKDAMTAMSKIFSLDI-NSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~-~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +.++.++|...  ...+.. ++++. ++++.+.+.++.++||+++ .++++|+|+.+|+
T Consensus        53 ~~~v~~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di  107 (110)
T cd04601          53 DKPVSEVMTPE--NLLTTVEGTSLE-EALELLHEHKIEKLPVVDD-EGKLKGLITVKDI  107 (110)
T ss_pred             CCCHHHhcccC--ceEEecCCCCHH-HHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhh
Confidence            45788999643  344556 88997 9999999999999999975 3689999985543

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.66  E-value=0.017  Score=48.66  Aligned_cols=54  Identities=19%  Similarity=0.361  Sum_probs=44.8

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      .+.++.++|.+  ++.+++.++++. ++++.+.+.+..++||+++ .++++|+++.++
T Consensus        56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~d  109 (113)
T cd04615          56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDD-KGKVGGIVTEDD  109 (113)
T ss_pred             cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECC-CCeEEEEEEHHH
Confidence            44578889974  678899999998 9999999999999999974 368999998544

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.65  E-value=0.019  Score=48.28  Aligned_cols=55  Identities=16%  Similarity=0.272  Sum_probs=44.8

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      ....+.++|.+  +..+++.++++. ++++.+.+.+..++||.+++ ++++|+++..|+
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di  110 (113)
T cd04622          56 DTTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDL  110 (113)
T ss_pred             ccCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHh
Confidence            33458899975  567799999998 99999999999999999743 789999985543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=95.64  E-value=0.018  Score=47.73  Aligned_cols=52  Identities=19%  Similarity=0.341  Sum_probs=44.6

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      +..+.++|.+  +..+++.++++. ++++.+.+++..++||.++  +.++|+++.++
T Consensus        50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~  101 (105)
T cd04599          50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGT  101 (105)
T ss_pred             cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHH
Confidence            4568899975  677899999998 9999999999999999975  78999998554

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=95.58  E-value=0.013  Score=51.48  Aligned_cols=55  Identities=16%  Similarity=0.276  Sum_probs=46.8

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      ....+++++|.+  +..+++.++++. ++++.+.+.+.+++||++  .+.++|+++.+|+
T Consensus        78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di  132 (135)
T cd04586          78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR--GGRLVGIVSRADL  132 (135)
T ss_pred             hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec--CCEEEEEEEhHhh
Confidence            456789999965  678899999998 999999999999999997  3789999996554

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.58  E-value=0.018  Score=48.33  Aligned_cols=52  Identities=13%  Similarity=0.386  Sum_probs=44.4

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      +.++.++|.  .++.++..++++. ++++.+.+++..++||+++  +.++|+|+..|
T Consensus        56 ~~~v~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~d  107 (111)
T cd04626          56 EKKVFNIVS--QDVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKD  107 (111)
T ss_pred             cCcHHHHhc--CCcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHH
Confidence            457888896  4677899999997 9999999999999999975  78999998544

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=95.55  E-value=0.019  Score=48.19  Aligned_cols=54  Identities=15%  Similarity=0.292  Sum_probs=45.2

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      .+..++++|.+  +..+++.++++. ++++.+.+++...+||+++ .++++|++...|
T Consensus        51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~d  104 (108)
T cd04596          51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDD-NKKLLGIISRQD  104 (108)
T ss_pred             ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHH
Confidence            35679999975  567899999998 9999999999999999974 368999998444

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=95.54  E-value=0.02  Score=48.17  Aligned_cols=53  Identities=15%  Similarity=0.237  Sum_probs=44.9

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      .+.+++++|.+  ++..++.++++. ++++.+.+++..++||.++  ++++|+|...+
T Consensus        55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~d  107 (111)
T cd04589          55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTD  107 (111)
T ss_pred             CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHH
Confidence            35578899975  678899999997 9999999999999999974  78999998544

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=95.53  E-value=0.024  Score=58.04  Aligned_cols=55  Identities=18%  Similarity=0.203  Sum_probs=46.8

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      +.+|+|+|++  +..+++.++++. ++++.+.+++..++||++++ ++++|+|..+|++
T Consensus       262 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~  316 (321)
T PRK11543        262 TTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFY  316 (321)
T ss_pred             CCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHH
Confidence            4568999986  677899999998 99999999999999999753 5899999966644

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.53  E-value=0.019  Score=48.37  Aligned_cols=53  Identities=17%  Similarity=0.325  Sum_probs=45.0

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +..+.++|.+  +..+++.++++. ++++.+.+++..++||.++  +.++|+++.+|+
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di  111 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDV  111 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHH
Confidence            4578899975  567899999998 9999999999999999985  789999985543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=95.49  E-value=0.025  Score=62.93  Aligned_cols=59  Identities=17%  Similarity=0.220  Sum_probs=48.6

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCC-CceEEEEEccchHHHH
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTP-TNIIGAILGHSHMAVV  265 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~-d~IvGiv~~~d~m~~v  265 (492)
                      +.+++|+|++  ++.+++.++++. ++++.+.+++.+++||+|++. ++++|+|+.+|+++.+
T Consensus       511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l  570 (574)
T PRK01862        511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY  570 (574)
T ss_pred             cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence            4679999975  567899999998 999999999999999998653 4699999977655443

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.46  E-value=0.026  Score=48.59  Aligned_cols=48  Identities=25%  Similarity=0.277  Sum_probs=40.4

Q ss_pred             ccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEcc
Q 011147          208 KDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGH  259 (492)
Q Consensus       208 ~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~  259 (492)
                      .++|.  .++.+++.++++. ++++.+.+++.+++||++++ ++++|+|+.+
T Consensus        71 ~~~~~--~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~  118 (123)
T cd04627          71 LTIGT--SDVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVT  118 (123)
T ss_pred             cccCc--CCceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHH
Confidence            45675  4678899999997 99999999999999999754 6899999844

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=95.45  E-value=0.022  Score=48.33  Aligned_cols=54  Identities=9%  Similarity=0.201  Sum_probs=42.6

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      ..++++|.+....+..+.++++. ++++.+.+++..++||++++ +.++|+|..++
T Consensus        57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~d  110 (114)
T cd04602          57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSD  110 (114)
T ss_pred             CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHH
Confidence            45889997655444444489997 99999999999999999743 68999998554

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.42  E-value=0.024  Score=48.37  Aligned_cols=56  Identities=11%  Similarity=0.285  Sum_probs=46.2

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      ....++.++|.  .++.+++.++++. ++++.+.+.+..++||++++ ++++|+++.+|+
T Consensus        64 ~~~~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl  119 (122)
T cd04803          64 ERDVPVAEVMK--TDVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDF  119 (122)
T ss_pred             ccCcCHHHhhC--CCCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHh
Confidence            45667888885  4677899999998 99999999999999999753 689999985543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.40  E-value=0.021  Score=48.97  Aligned_cols=56  Identities=9%  Similarity=0.289  Sum_probs=46.2

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      ..+..++++|.+  .+.+++.++++. ++++.+.+.+..++||.+++ ++++|+|+..|+
T Consensus        67 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di  122 (125)
T cd04631          67 AINEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDL  122 (125)
T ss_pred             hhhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHh
Confidence            345678899864  678899999997 99999999999999999753 689999995543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=95.34  E-value=0.026  Score=47.45  Aligned_cols=55  Identities=13%  Similarity=0.227  Sum_probs=45.7

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      +.+++++|.+  +...++.++++. ++++.+.+.+...+||++++ ++++|+|...|++
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll  106 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVI  106 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhh
Confidence            4578999975  578899999997 99999999999999999753 7899999965543

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=95.31  E-value=0.027  Score=47.18  Aligned_cols=54  Identities=17%  Similarity=0.352  Sum_probs=45.2

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      .+..++++|.+  ...+++.++++. ++++.+.+.+.+++||.+  .++++|+|+.+|+
T Consensus        54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di  107 (110)
T cd04595          54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE--DGRLVGIVTRTDL  107 (110)
T ss_pred             ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHh
Confidence            45678899975  577899999997 999999999999999997  3689999995543

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=95.30  E-value=0.023  Score=62.17  Aligned_cols=58  Identities=10%  Similarity=0.190  Sum_probs=50.6

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      .+.+|+|+|+|+.++++++.+.++. ++++++.+++..++||++++ ++++|+|+.+|++
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl  214 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLK  214 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhh
Confidence            3568999999888899999999998 99999999999999999753 6899999966643

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=95.28  E-value=0.026  Score=47.17  Aligned_cols=51  Identities=14%  Similarity=0.171  Sum_probs=42.8

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      .++.++|.+  +..+++.++++. ++++.+.+++.+++||.++  ++++|+++..|
T Consensus        50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~d  100 (104)
T cd04594          50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDS  100 (104)
T ss_pred             cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHH
Confidence            357888875  467899999997 9999999999999999973  78999998444

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.27  E-value=0.032  Score=47.78  Aligned_cols=50  Identities=12%  Similarity=0.092  Sum_probs=41.0

Q ss_pred             ccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          208 KDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       208 ~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +++|.  .++.++..++++. ++++.+.+++.+++||++++ ++++|+|+.+|+
T Consensus        68 ~~~~~--~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di  117 (120)
T cd04641          68 RSQDF--EGVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIISLSDI  117 (120)
T ss_pred             cccCC--CCCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEEHHHh
Confidence            34454  3667899999998 99999999999999999754 789999996553

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.26  E-value=0.024  Score=48.42  Aligned_cols=55  Identities=15%  Similarity=0.382  Sum_probs=45.6

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      ...++.++|..  ++.+++.++++. ++++.+.+.+.+++||++++ +.++|++..+|+
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl  119 (122)
T cd04635          65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDV  119 (122)
T ss_pred             ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHh
Confidence            45678889963  568899999997 99999999999999999753 789999985554

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.22  E-value=0.027  Score=48.79  Aligned_cols=56  Identities=16%  Similarity=0.272  Sum_probs=46.1

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeC-CCCceEEEEEccch
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVG-TPTNIIGAILGHSH  261 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~-~~d~IvGiv~~~d~  261 (492)
                      .+..++++|++  ++.+++.++++. ++++.+.+.++..+||.++ +.+.++|+|..+|+
T Consensus        69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di  125 (128)
T cd04632          69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDV  125 (128)
T ss_pred             ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhh
Confidence            45678999974  678899999997 9999999999999999853 44689999996654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=95.17  E-value=0.028  Score=60.77  Aligned_cols=61  Identities=15%  Similarity=0.223  Sum_probs=50.8

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVK  267 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk  267 (492)
                      .+.+++++|+|  ++++++.++++. ++++.+.++++..+||+++ .++++|+|+.+|++..+.+
T Consensus       193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~~  253 (449)
T TIGR00400       193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQS  253 (449)
T ss_pred             CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHHh
Confidence            55689999986  677899999997 9999999999999999974 4689999997776655543

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=95.13  E-value=0.035  Score=46.35  Aligned_cols=55  Identities=11%  Similarity=0.226  Sum_probs=45.1

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      .+..+.++|.+  ++.+++.++++. ++++.+.+.+...+||+++ .++++|+++.+++
T Consensus        54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di  108 (111)
T cd04611          54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDD-DGELLGLLSQTDL  108 (111)
T ss_pred             CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHh
Confidence            35668889864  678899999998 9999999999889999975 3689999985543

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=95.12  E-value=0.03  Score=46.90  Aligned_cols=52  Identities=15%  Similarity=0.324  Sum_probs=44.3

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      +.++.++|..  ++.+++.++++. ++++.+.+++.+++||.++  +.++|+++..|
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~d  107 (111)
T cd04800          56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATD  107 (111)
T ss_pred             cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHH
Confidence            3568888864  678899999998 9999999999999999975  78999998544

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=95.08  E-value=0.035  Score=46.13  Aligned_cols=52  Identities=25%  Similarity=0.505  Sum_probs=43.4

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      ..+.++|.+  ++.+++.++++. ++++.+.+.+.+++||++++ ++++|+++.+|
T Consensus        54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~  105 (109)
T cd04583          54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSS  105 (109)
T ss_pred             CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHH
Confidence            457888975  567899999997 99999999999999999743 68999998554

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.92  E-value=0.035  Score=46.22  Aligned_cols=43  Identities=16%  Similarity=0.326  Sum_probs=37.4

Q ss_pred             eEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          217 IFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       217 v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +.+++.++++. ++++.+.+++..++||.+++ ++++|+|..+|+
T Consensus        51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di   93 (96)
T cd04614          51 VVTATKRTTVS-ECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDL   93 (96)
T ss_pred             cEEecCCCCHH-HHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHh
Confidence            67899999998 99999999999999999753 689999996554

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.86  E-value=0.039  Score=46.19  Aligned_cols=52  Identities=17%  Similarity=0.358  Sum_probs=43.7

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      ..+.++|.  .++.+++.++++. ++++.+.+++..++||++++ +.++|+++.+|
T Consensus        56 ~~v~~~~~--~~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~d  107 (111)
T cd04639          56 APVRGVMR--RDFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLEN  107 (111)
T ss_pred             CcHHHHhc--CCCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHH
Confidence            46888896  3678899999998 99999999999999999753 68999998544

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=94.80  E-value=0.06  Score=44.87  Aligned_cols=53  Identities=13%  Similarity=0.211  Sum_probs=43.9

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      ..+.++|.+  ++.+++.++++. ++++.+.+.+...+||.++ .++++|++..+|+
T Consensus        56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di  108 (111)
T cd04612          56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDD-SGRLVGIVSRSDL  108 (111)
T ss_pred             cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHh
Confidence            457788875  678899999998 9999999999999999975 4689999985553

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=94.69  E-value=0.39  Score=50.61  Aligned_cols=106  Identities=13%  Similarity=0.228  Sum_probs=68.1

Q ss_pred             EEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhh
Q 011147          219 SLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQR  298 (492)
Q Consensus       219 ~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~  298 (492)
                      ....+.+.. ++++.+...+.....|+++ .++..|++...+    +.+.....          ..+.+.          
T Consensus       254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~----~~~~~~~~----------~~~~~~----------  307 (363)
T TIGR01186       254 TKTADKGPR-SALQLMRDERVDSLYVVDR-QNKLVGVVDVES----IKQARKKA----------QGLQDV----------  307 (363)
T ss_pred             eecCCCCHH-HHHHHHHhcCCceEEEEcC-CCCEEEEEeHHH----HHHHhhcC----------Cchhhh----------
Confidence            344566676 8888888888888888874 468999998332    22221110          011111          


Q ss_pred             hccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcceEEecccCCCCCCCcEEEEechhHHHHH
Q 011147          299 QGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVDEEVIGIITLEDVMEE  378 (492)
Q Consensus       299 ~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~~lVv~~~~~pde~g~vvGIITlEDViEe  378 (492)
                         +......  ++.+                    .++.+++..|.+....++|+      |++|.++|+||.+++++.
T Consensus       308 ---~~~~~~~--~~~~--------------------~~~~~~~~~~~~~~~~~~v~------~~~~~~~g~i~~~~~~~~  356 (363)
T TIGR01186       308 ---LIDDIYT--VDAG--------------------TLLRETVRKVLKAGIKVPVV------DEDQRLVGIVTRGSLVDA  356 (363)
T ss_pred             ---hccCCce--ECCC--------------------CcHHHHHHHHHhCCCCEEEE------CCCCcEEEEEEHHHHHHH
Confidence               0000000  1222                    23667788888876668888      789999999999999999


Q ss_pred             Hcc
Q 011147          379 LLQ  381 (492)
Q Consensus       379 Llg  381 (492)
                      |.+
T Consensus       357 ~~~  359 (363)
T TIGR01186       357 LYD  359 (363)
T ss_pred             HHh
Confidence            976

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=94.69  E-value=0.068  Score=36.85  Aligned_cols=37  Identities=19%  Similarity=0.431  Sum_probs=30.4

Q ss_pred             HHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHH
Q 011147          337 LHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEEL  379 (492)
Q Consensus       337 l~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeL  379 (492)
                      +.++++.|++.+.+ ++|+      +++++++|++|.+|+...+
T Consensus        11 ~~~~~~~~~~~~~~~~~v~------~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116       11 LEEALELLREHGIRRLPVV------DEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             HHHHHHHHHHhCCCcccEE------CCCCeEEEEEEHHHHHHhh
Confidence            44568899888877 8888      6678999999999998754

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=94.69  E-value=0.038  Score=61.08  Aligned_cols=59  Identities=10%  Similarity=0.188  Sum_probs=49.9

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAV  264 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~  264 (492)
                      ...+|+++|+ +.++.+++.+++++ ++.+.+.++++.++||.+++ ++++|+++.+|+++.
T Consensus       244 ~~~~V~~iM~-~~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~  302 (546)
T PRK14869        244 QSIPVSYIMT-TEDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSP  302 (546)
T ss_pred             cCCCHHHhcc-CCCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhcc
Confidence            3578999998 24788899999998 99999999999999999753 789999997776553

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.67  E-value=0.039  Score=46.51  Aligned_cols=53  Identities=15%  Similarity=0.215  Sum_probs=42.2

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      .+.+++++|.+  ...+++.++++. ++++.+.+.+  .+||+++ .++++|+++.+|+
T Consensus        61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~di  113 (116)
T cd04643          61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDD-DGIFIGIITRREI  113 (116)
T ss_pred             hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHh
Confidence            46789999986  467789999998 9999997754  5999974 3689999985543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=94.62  E-value=0.042  Score=59.98  Aligned_cols=70  Identities=17%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             CCCCChhHHHHHhhccc---ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          185 GGELTHDETTIITGALD---MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       185 ~g~L~~~E~~iI~~vl~---l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      .|.++  ++++..+++.   =...+|+++||  .++.+++..+-+ .|++-.|.+.+..|+||.++  ++++|+|+..|+
T Consensus       193 ~GIvT--~~dl~~~v~~~g~~~~~~V~evmT--~p~~svd~~~~~-feAml~m~r~~I~hl~V~e~--gq~~Gilt~~dI  265 (610)
T COG2905         193 LGIVT--RKDLRSRVIADGRSKTQKVSEVMT--SPVISVDRGDFL-FEAMLMMLRNRIKHLPVTED--GQPLGILTLTDI  265 (610)
T ss_pred             cceee--hHHHHHHHHhcCCCcccchhhhhc--cCceeecCcchH-HHHHHHHHHhCCceeeeecC--CeeeEEeeHHHH
Confidence            45554  5566666655   34568999999  699999999998 59999999999999999976  799999984443

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.61  E-value=0.043  Score=49.00  Aligned_cols=54  Identities=15%  Similarity=0.373  Sum_probs=45.6

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      ....+.++|.+  +..+++.++++. ++++.+.+.+++++||++.  ++++|++..+|+
T Consensus        87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl  140 (143)
T cd04634          87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDI  140 (143)
T ss_pred             hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHh
Confidence            45678899975  567899999998 9999999999999999975  789999985543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.60  E-value=0.046  Score=46.70  Aligned_cols=54  Identities=20%  Similarity=0.318  Sum_probs=44.4

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +..++++|..  +..+++.++++. ++++.+.+++..++||++++ ++++|++..+|+
T Consensus        66 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dl  119 (122)
T cd04637          66 NRRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDL  119 (122)
T ss_pred             HhHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHh
Confidence            3468888863  678899999998 99999999999999999643 689999985543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=94.45  E-value=0.052  Score=54.03  Aligned_cols=56  Identities=13%  Similarity=0.223  Sum_probs=49.3

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      -+.+|+|+|.+  ++++++.|..+- |++++|..++..|+-|.+ +.+..+|++++-|++
T Consensus       232 ~~~kV~~~M~k--~vitI~eDe~i~-dAir~M~~~nVGRLlV~d-s~gkpvGiITrTDIL  287 (294)
T COG2524         232 LDAKVSDYMRK--NVITINEDEDIY-DAIRLMNKNNVGRLLVTD-SNGKPVGIITRTDIL  287 (294)
T ss_pred             ccccHHHHhcc--CCceEcCchhHH-HHHHHHHhcCcceEEEEc-cCCcEEEEEehHHHH
Confidence            45789999985  889999999997 999999999999999997 358999999977654

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=94.39  E-value=0.052  Score=45.44  Aligned_cols=50  Identities=8%  Similarity=0.022  Sum_probs=40.9

Q ss_pred             ccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          206 TAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       206 ~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      .+.++|.   ++.+++.++++. ++++.+.+++.+++||+++ .++++|+++.+|
T Consensus        58 ~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~d  107 (111)
T cd04590          58 DLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDE-YGGTAGLVTLED  107 (111)
T ss_pred             CHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHH
Confidence            4666664   457789999997 9999999999999999975 367999998554

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=94.20  E-value=0.077  Score=44.31  Aligned_cols=53  Identities=19%  Similarity=0.278  Sum_probs=43.6

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      ..+.++|.+  +...++.++++. ++++.+.+.+...+||.+++ +.++|++..+|+
T Consensus        55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl  107 (110)
T cd04588          55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDI  107 (110)
T ss_pred             cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHh
Confidence            457788863  677899999998 99999999999999999753 689999986554

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=94.19  E-value=0.29  Score=51.93  Aligned_cols=129  Identities=13%  Similarity=0.115  Sum_probs=80.6

Q ss_pred             cccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCccccc
Q 011147          211 MTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDIN  290 (492)
Q Consensus       211 MtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~  290 (492)
                      ++++...+++.+...+- +....+.++++.|+||.+.+..+++.++..+-+    ++.+....       ...+....+.
T Consensus       158 ~~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rI----l~~l~~~~-------~~~~~~~~l~  225 (381)
T KOG1764|consen  158 ETLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRI----LKFLWLNG-------RLLPLPSLLS  225 (381)
T ss_pred             cccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHH----HHHHHHhh-------cccccHHHhh
Confidence            34444547788888876 788899999999999998656799999984433    44432211       0111111100


Q ss_pred             ccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEE
Q 011147          291 INSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGI  369 (492)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGI  369 (492)
                            ....++.  .-.|  -.-...              +...++.+|+++|..++.. ++||      |++|+.+|+
T Consensus       226 ------~s~~dl~--ig~~--~~i~~i--------------~~~~~v~~al~~m~~~~is~lpvV------~~~g~~v~~  275 (381)
T KOG1764|consen  226 ------KSLSDLG--IGTW--SNIASI--------------SEDTPVIEALKIMSERRISALPVV------DENGKKVGN  275 (381)
T ss_pred             ------CCHHHhC--cchh--hhheee--------------cCCCcHHHHHHHHHhcCcCcceEE------cCCCceecc
Confidence                  0000000  0000  000000              1123466789999999999 9999      789999999


Q ss_pred             echhHHHHHHcc
Q 011147          370 ITLEDVMEELLQ  381 (492)
Q Consensus       370 ITlEDViEeLlg  381 (492)
                      +++-|++-.+..
T Consensus       276 ~s~~Dv~~l~~~  287 (381)
T KOG1764|consen  276 YSRFDVIHLARE  287 (381)
T ss_pred             eehhhhhhhhhc
Confidence            999999998876

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=94.18  E-value=0.061  Score=53.41  Aligned_cols=51  Identities=10%  Similarity=0.195  Sum_probs=43.7

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEE
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAIL  257 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~  257 (492)
                      .+.+++|+|.+  ++.+++.++++. ++++.+.+++..++||++++ ++++|+|+
T Consensus       218 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~GvI~  268 (268)
T TIGR00393       218 LKSEVRDFMTL--GPKTFKLDALLL-EALEFLERRKITSLVVVDDH-NKVLGVLH  268 (268)
T ss_pred             ccCcHHHhCCC--CCeEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CeEEEEEC
Confidence            35679999975  567899999998 99999999999999999743 58999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=94.14  E-value=0.066  Score=58.38  Aligned_cols=55  Identities=11%  Similarity=0.274  Sum_probs=47.3

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      ..++|+|++  ++.+++.++++. ++++.+.+++..++||++++ ++++|+|+.+|+++
T Consensus       148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~  202 (479)
T PRK07807        148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALR  202 (479)
T ss_pred             CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHH
Confidence            569999985  788999999998 99999999999999999753 68999999666543

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.02  E-value=0.09  Score=45.48  Aligned_cols=44  Identities=18%  Similarity=0.179  Sum_probs=37.7

Q ss_pred             cceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          215 SKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       215 ~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      .++.+++.++++. ++++.+.+++.+++||++++ ++++|+|+..|
T Consensus        79 ~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~d  122 (126)
T cd04642          79 RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTD  122 (126)
T ss_pred             CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHH
Confidence            4678899999998 99999999999999999754 78999998443

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=94.00  E-value=0.11  Score=46.47  Aligned_cols=39  Identities=23%  Similarity=0.255  Sum_probs=34.0

Q ss_pred             HHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          337 LHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       337 l~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      +.++++.|.+.+.+ ++|+      |++|+++|+||.+|++..+..
T Consensus        12 l~ea~~~m~~~~~~~~~Vv------D~~g~l~Givt~~Dl~~~~~~   51 (133)
T cd04592          12 LKEALNLMLDEKQSCVLVV------DSDDFLEGILTLGDIQRFLFT   51 (133)
T ss_pred             HHHHHHHHHHcCCCEEEEE------CCCCeEEEEEEHHHHHHHHhh
Confidence            56788999888877 9999      788999999999999998864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.96  E-value=0.084  Score=44.22  Aligned_cols=53  Identities=13%  Similarity=0.199  Sum_probs=43.4

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      +..+.++|.+  ++.++..++++. ++++.+.+++...+||++++ +.++|+++.+|
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~d  108 (112)
T cd04624          56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRD  108 (112)
T ss_pred             ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHH
Confidence            3468888864  577899999997 89999999899999999754 67999998544

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=93.95  E-value=0.1  Score=44.02  Aligned_cols=47  Identities=15%  Similarity=0.214  Sum_probs=39.9

Q ss_pred             ccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          210 AMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       210 iMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +|.+  +..+++.++++. ++++.+.+++...+||.++  ++++|+|..+|+
T Consensus        56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl  102 (105)
T cd04591          56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDL  102 (105)
T ss_pred             hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhh
Confidence            7864  667899999998 9999999999999999953  689999996554

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=93.95  E-value=9.9  Score=40.71  Aligned_cols=60  Identities=8%  Similarity=0.005  Sum_probs=48.2

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHh
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKC  268 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~  268 (492)
                      +..++++|.   ++.+++.+.++. ++++.+.+++....+|+|+ .+.++|+|+..|++..++..
T Consensus       254 ~~~l~~~~~---~~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivge  313 (408)
T TIGR03520       254 NFDWQSLLR---EPYFVPENKKLD-DLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVGD  313 (408)
T ss_pred             CCCHHHHcC---CCeEeCCCCcHH-HHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhCC
Confidence            345778886   467899999998 9999999999889999974 57899999977666665544

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=93.94  E-value=0.076  Score=57.88  Aligned_cols=54  Identities=11%  Similarity=0.246  Sum_probs=46.8

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      ..++++|++  ++.+++.++++. ++++.+.+++...+||+++ .++++|+|..+|++
T Consensus       146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl  199 (475)
T TIGR01303       146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGAL  199 (475)
T ss_pred             CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHH
Confidence            579999985  778999999998 9999999999999999974 36899999966653

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=93.81  E-value=0.11  Score=43.33  Aligned_cols=51  Identities=18%  Similarity=0.307  Sum_probs=42.1

Q ss_pred             ccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          206 TAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       206 ~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      .++++|.+  ++.+++.++++. ++++.+.+.+..++||++++ +.++|++...|
T Consensus        56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~d  106 (110)
T cd04605          56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSED  106 (110)
T ss_pred             CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHH
Confidence            47788864  567899999998 99999999998999999753 78999998444

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=93.23  E-value=0.13  Score=43.62  Aligned_cols=54  Identities=11%  Similarity=0.103  Sum_probs=42.2

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCC---ccceEEeCCCCceEEEEEccc
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGH---SRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~---SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      .+.++.++|.+  +...++.++++. ++++.+.+++.   ..+||++++ +.++|+|...|
T Consensus        59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~d  115 (119)
T cd04598          59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKD  115 (119)
T ss_pred             cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHH
Confidence            45679999975  677899999998 99999988875   345777643 78999998544

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=92.87  E-value=0.14  Score=55.53  Aligned_cols=58  Identities=12%  Similarity=0.265  Sum_probs=49.1

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      .+.+++++|++ .++.+++.++++. ++++.+.+++...+||+++ .++++|+|+.+|+++
T Consensus       141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~  198 (450)
T TIGR01302       141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVK  198 (450)
T ss_pred             CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhh
Confidence            35679999985 4788999999998 9999999999999999975 478999999666543

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=92.47  E-value=0.19  Score=41.73  Aligned_cols=51  Identities=16%  Similarity=0.242  Sum_probs=41.8

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      ..+.++|..  +..+++.++++. ++++.+.+.+..++||.++  ++++|+++.+|
T Consensus        52 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d  102 (106)
T cd04638          52 EQLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVAD  102 (106)
T ss_pred             chHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHH
Confidence            356777864  567789999997 9999999999999999974  58999998554

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=92.30  E-value=0.2  Score=43.11  Aligned_cols=35  Identities=29%  Similarity=0.383  Sum_probs=29.9

Q ss_pred             HHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHH
Q 011147          337 LHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVME  377 (492)
Q Consensus       337 l~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViE  377 (492)
                      +.++++.|.+.+.. ++|+      |++|+++|+||..|+.+
T Consensus        77 l~~a~~~~~~~~~~~lpVv------d~~~~l~Givt~~dl~~  112 (113)
T cd04597          77 LREALNLMHEHNIRTLPVV------DDDGTPAGIITLLDLAE  112 (113)
T ss_pred             HHHHHHHHHHcCCCEEEEE------CCCCeEEEEEEHHHhhc
Confidence            56678999888877 8899      78899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=91.70  E-value=0.4  Score=41.69  Aligned_cols=39  Identities=10%  Similarity=0.280  Sum_probs=32.8

Q ss_pred             HHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          337 LHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       337 l~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      +.++++.|++.+.. ++|+      |++|+++|+||.+|++..+..
T Consensus        13 v~~a~~~m~~~~~~~~~Vv------d~~~~~~Gii~~~dl~~~~~~   52 (124)
T cd04608          13 CAEAIEILKEKGFDQLPVV------DESGKILGMVTLGNLLSSLSS   52 (124)
T ss_pred             HHHHHHHHHHcCCCEEEEE------cCCCCEEEEEEHHHHHHHHHH
Confidence            55678899888777 8888      778999999999999987764

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=91.68  E-value=0.25  Score=40.30  Aligned_cols=51  Identities=18%  Similarity=0.415  Sum_probs=42.0

Q ss_pred             cccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          207 AKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       207 V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +.++|..  +..++..++++. ++++.+.+.+.+.+||.+++ +.++|++..+++
T Consensus        60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl  110 (113)
T cd02205          60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDI  110 (113)
T ss_pred             HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHh
Confidence            5677764  677888999997 99999999999999999764 789999985543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=91.22  E-value=0.3  Score=53.45  Aligned_cols=56  Identities=13%  Similarity=0.264  Sum_probs=47.0

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      +.+++++|++ .++++++.++++. ++++.+.+++++.+||+++ .++++|+|+.+|++
T Consensus       146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl  201 (486)
T PRK05567        146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDD-NGRLKGLITVKDIE  201 (486)
T ss_pred             CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhh
Confidence            4579999983 4678899999998 9999999999999999975 37899999855543

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=90.08  E-value=0.36  Score=49.31  Aligned_cols=60  Identities=8%  Similarity=0.062  Sum_probs=48.5

Q ss_pred             ccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhc
Q 011147          206 TAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKN  270 (492)
Q Consensus       206 ~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~  270 (492)
                      .++++|.|   +++++.+.++. ++++.+.+.+....||+++ .+.++|+|+..|++..++..+.
T Consensus       134 ~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivGei~  193 (292)
T PRK15094        134 SMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVGEIE  193 (292)
T ss_pred             CHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhCCCc
Confidence            36788864   45799999998 9999999999999999975 4679999997777666665443

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=88.67  E-value=0.77  Score=37.87  Aligned_cols=38  Identities=16%  Similarity=0.343  Sum_probs=32.0

Q ss_pred             HHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          337 LHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       337 l~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      +.++++.|.+.+.+ ++|+      |+ |+.+|+||..|+...+.+
T Consensus        12 ~~~~~~~~~~~~~~~~~V~------~~-~~~~G~v~~~dl~~~~~~   50 (110)
T cd04609          12 VSQAIERMREYGVSQLPVV------DD-GRVVGSIDESDLLDALIE   50 (110)
T ss_pred             HHHHHHHHHHcCCceeeEe------eC-CeeEEEEeHHHHHHHHhc
Confidence            56678899888877 8888      56 999999999999997764

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=87.62  E-value=0.98  Score=42.18  Aligned_cols=59  Identities=12%  Similarity=0.214  Sum_probs=42.4

Q ss_pred             ccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHH
Q 011147          200 LDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVV  265 (492)
Q Consensus       200 l~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~v  265 (492)
                      =++.+.+|+++|---.  -.++.|.+++ . +..+++ +|..+-|.++  ++++||++.+|+|+.+
T Consensus       125 e~i~~~~vr~vM~e~f--P~Vs~~~~l~-v-I~~LL~-~~~AVlV~e~--G~~vGIITk~DI~k~~  183 (187)
T COG3620         125 ESIRSLRVREVMGEPF--PTVSPDESLN-V-ISQLLE-EHPAVLVVEN--GKVVGIITKADIMKLL  183 (187)
T ss_pred             cchhhhhHHHHhcCCC--CcCCCCCCHH-H-HHHHHh-hCCeEEEEeC--CceEEEEeHHHHHHHH
Confidence            3478899999997433  3588999997 4 444444 4567888854  8999999988776543

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=86.43  E-value=0.79  Score=48.56  Aligned_cols=69  Identities=10%  Similarity=0.147  Sum_probs=53.5

Q ss_pred             CCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          187 ELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       187 ~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      .++..+.+.+    +=..+.+.|+||++.  ++...+.+++ ++-+.+.++.--++||+++ .|+.|-+|.+.|+++
T Consensus       157 ~vtsrdi~f~----~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k  225 (503)
T KOG2550|consen  157 IITSRDIQFL----EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMK  225 (503)
T ss_pred             EEehhhhhhh----hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceecc-CCceeeeeehhhhhh
Confidence            3444444444    456778999999977  7788899997 8888888888889999974 589999999776543

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=84.85  E-value=1.2  Score=48.36  Aligned_cols=58  Identities=17%  Similarity=0.165  Sum_probs=49.1

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      -.+..++|+|.++  ++++..+++.+ ++.+.+.++...-.||+++ .++.+|+++..|++.
T Consensus       193 ~~~~~i~~im~~~--~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~-~~~LiG~itiDDiid  250 (451)
T COG2239         193 EPDELLKDLMEDD--VVSVLADDDQE-EVARLFEKYDLLAVPVVDE-DNRLIGIITIDDIID  250 (451)
T ss_pred             CcHhHHHHHhccc--ceeecccCCHH-HHHHHHHHhCCeecceECC-CCceeeeeeHHHHHH
Confidence            4667799999874  78999999997 9999999999999999975 478999999665543

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=83.32  E-value=2  Score=45.35  Aligned_cols=53  Identities=19%  Similarity=0.391  Sum_probs=43.6

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      ..+.+.|.+  ++.+++.++++. +++..+.++++. +||.++ .+.++|+|...+++
T Consensus       302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~  354 (363)
T TIGR01186       302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLV  354 (363)
T ss_pred             Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHH
Confidence            458888864  567799999998 999999999999 999975 47899999855443

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=80.77  E-value=2.9  Score=44.98  Aligned_cols=39  Identities=13%  Similarity=0.271  Sum_probs=33.2

Q ss_pred             HHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          337 LHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       337 l~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      +.++++.|.+.+.. ++|+      |++|+++|+||.+|+++.+..
T Consensus       354 l~ea~~~m~~~~~~~~~Vv------d~~~~~~Givt~~dl~~~~~~  393 (454)
T TIGR01137       354 VGDAIEILREYGFDQLPVV------TEAGKVLGSVTLRELLSALFA  393 (454)
T ss_pred             HHHHHHHHHHcCCCEEEEE------cCCCeEEEEEEHHHHHHHHhc
Confidence            66778999887777 8888      678999999999999987765

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	492
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	6e-15
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	3e-13
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	4e-12
3ocm_A	173	Putative membrane protein; structural genomics, PS	7e-12
3oco_A	153	Hemolysin-like protein containing CBS domains; str	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	8e-08
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	1e-07
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	2e-07
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	2e-07
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	5e-07
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-06

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156

 Score = 71.3 bits (176), Expect = 6e-15
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 168 RAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLD 227
             ++  L+     +A +      D    +   LD +    +DAM   S++  L  N  ++
Sbjct: 5   AEDVLNLLR----QAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE 60

Query: 228 EKTMGLIISNGHSRVPIYVGTPTNIIGAIL 257
                 +I   HSR P+       ++G + 
Sbjct: 61  R-ITAYVIDTAHSRFPVIGEDKDEVLGILH 89

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score = 66.7 bits (164), Expect = 3e-13
 Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 168 RAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLD 227
           + +++ ++     E    G + H+E  ++     + ++T    M   S I  LD+N  LD
Sbjct: 9   QEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD 64

Query: 228 EKTMGLIISNGHSRVPIYVGTPTNIIGAIL 257
              +  ++ + HSR P+      +++G I 
Sbjct: 65  A-NLRTVMQSPHSRFPVCRNNVDDMVGIIS 93

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148

 Score = 62.8 bits (154), Expect = 4e-12
 Identities = 9/71 (12%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 184 KGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVP 243
             G +   E  ++    +  +K  ++ M   + +  +  +   ++  + ++   G +R P
Sbjct: 2   NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEEK-ILAILKEEGVTRYP 60

Query: 244 IYVGTPTNIIG 254
           +      +I+G
Sbjct: 61  VCRKNKDDILG 71

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score = 62.9 bits (154), Expect = 7e-12
 Identities = 12/89 (13%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 169 AELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDE 228
           +      D+  +          +E  +++G L + +++ +  MT  + +  ++I+     
Sbjct: 1   SNASDESDLP-SAMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAAT 59

Query: 229 KTMGLIISNGHSRVPIYVGTPTNIIGAIL 257
                + +  HS  P+  G+   ++G   
Sbjct: 60  -IRQQLTAAPHSFFPVCRGSLDEVVGIGR 87

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153

 Score = 56.3 bits (137), Expect = 1e-09
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 187 ELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYV 246
               ++   +  A +M  K A D M   + +  +D++  + +  + L +   +SR P+  
Sbjct: 2   NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIAD-ALLLYLEEQYSRFPVTA 60

Query: 247 -GTPTNIIG 254
                 IIG
Sbjct: 61  DNDKDKIIG 69

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 48/372 (12%), Positives = 112/372 (30%), Gaps = 104/372 (27%)

Query: 124 YGLSVGA-KLSVLVRLIVIVLFPIAYPISKLLD----WL-LGKRHSALLRRAELKTL--- 174
            G+ +G+ K + +    + V    +Y +   +D    WL L   +S       L+ L   
Sbjct: 156 DGV-LGSGK-TWVA---LDVCL--SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 175 VDMHGNEAGKGGELTHDETTIITGALD--MTQKTAKDAMTAM-----SKIF-SLDINSRL 226
           +D +                 I   L   +  K  ++ +  +     +K + + +++ ++
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 227 DEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEI----AEMEKSK 282
                 L+ +             T  I   L H  M +     ++ K +     +     
Sbjct: 269 ------LLTTRFKQVTDFLSAATTTHI--SLDHHSMTLT---PDEVKSLLLKYLDCRPQD 317

Query: 283 APMQ-HDIN------INSNLKQRQGELKG--NVQNEQFNAYMNSPSVISSDIDIQSSMAK 333
            P +    N      I  +++          +V  ++        ++I S +++     +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT------TIIESSLNVL----E 367

Query: 334 SADLHLCLKKWE--RQDVKISKEELESL--PSVDEEVIGIITLEDVMEEL---------- 379
            A+      +         I    L  +    +  +V        V+ +L          
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV------MVVVNKLHKYSLVEKQP 421

Query: 380 ---------LQEEILDETDDYVDVHRKIKINMLESQKSPSPGAAFVSRLRRTPMDSPIPS 430
                    +  E+  + ++   +HR I    ++    P          +    D  IP 
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSI----VDHYNIP----------KTFDSDDLIPP 467

Query: 431 HHDQTPVSSYNH 442
           + DQ     Y+H
Sbjct: 468 YLDQY---FYSH 476

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129

 Score = 50.1 bits (121), Expect = 8e-08
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAIL 257
             ++T  D M   S++  LDI+  L +  +  II   HSR P+Y     NIIG +L
Sbjct: 2   NAERTVADIMVPRSRMDLLDISQPLPQ-LLATIIETAHSRFPVYEDDRDNIIGILL 56

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIG 254
           +         MT    +F +D    ++E  +        SR  +Y     NIIG
Sbjct: 2   NAQDVPVTQVMTPRPVVFRVDATMTINE-FLDKHKDTPFSRPLVYSEQKDNIIG 54

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAIL 257
              +D M   S++ S+       E  +  +I   HSR P+   +  +++G +L
Sbjct: 3   LQVRDIMVPRSQMISIKATQTPRE-FLPAVIDAAHSRYPVIGESHDDVLGVLL 54

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} Length = 130

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIG 254
           + +  D M   ++I  +DIN       +  +  + H R+ +Y  +  + I 
Sbjct: 1   KVSVNDIMVPRNEIVGIDINDDWKS-IVRQLTHSPHGRIVLYRDSLDDAIS 50

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127

 Score = 47.4 bits (114), Expect = 5e-07
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAIL 257
           +  +D M   S++ +L  N  LDE  + +II + HSR P+      +I G ++
Sbjct: 3   QRVRDIMIPRSQMITLKRNQTLDE-CLDVIIESAHSRFPVISEDKDHIEGILM 54

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 26/83 (31%)

Query: 340 CLKKW-ERQDVKISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYVDVH--- 395
            ++KW E Q     ++ L+ L   D           VME+  +E+   + +++       
Sbjct: 86  SIRKWREEQ-----RKRLQEL---DAA-------SKVMEQEWREKAKKDLEEWNQRQSEQ 130

Query: 396 -RKIKINMLESQKSPSPGAAFVS 417
             K KIN   + K      AF  
Sbjct: 131 VEKNKINNRIADK------AFYQ 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	492
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.89
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.88
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.85
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.82
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.81
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.76
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.73
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.7
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.69
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.69
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.66
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.56
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.5
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.48
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.48
4esy_A	170	CBS domain containing membrane protein; structural	99.47
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.47
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.45
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.44
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.39
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.39
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.38
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.35
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.35
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.34
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.33
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.32
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.32
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.32
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.31
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.29
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.29
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.27
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.27
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.26
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.26
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.24
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.24
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.23
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.22
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.21
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.2
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.19
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.16
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.15
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.15
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.15
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.14
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.13
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.1
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.09
3ddj_A	296	CBS domain-containing protein; structural genomics	99.09
3ddj_A	296	CBS domain-containing protein; structural genomics	99.07
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.07
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.03
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.03
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.01
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.93
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.92
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.89
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.88
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.87
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.87
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.8
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.69
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.43
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.08
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.03
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	97.83
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	97.69
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	97.49
1pbj_A	125	Hypothetical protein; structural genomics, domain,	97.48
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	97.47
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	97.46
4fry_A	157	Putative signal-transduction protein with CBS DOM;	97.45
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	97.44
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	97.43
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	97.41
4esy_A	170	CBS domain containing membrane protein; structural	97.41
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	97.41
1vr9_A	213	CBS domain protein/ACT domain protein; structural	97.41
3oco_A	153	Hemolysin-like protein containing CBS domains; str	97.37
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	97.36
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	97.35
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	97.33
3fio_A	70	A cystathionine beta-synthase domain protein fused	97.32
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	97.29
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	97.29
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	97.26
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	97.26
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	97.25
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	97.24
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	97.24
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	97.22
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	97.22
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	97.21
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	97.19
1pvm_A	184	Conserved hypothetical protein TA0289; structural	97.08
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	97.08
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	97.01
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	96.96
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	96.95
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	96.93
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	96.92
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	96.91
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	96.9
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	96.86
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	96.8
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	96.8
3fio_A	70	A cystathionine beta-synthase domain protein fused	96.74
3ocm_A	173	Putative membrane protein; structural genomics, PS	96.51
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	96.48
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	96.48
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	96.31
2oux_A	286	Magnesium transporter; 10001B, structural genomics	96.2
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	95.73
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	95.65
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	95.52
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	95.47
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	95.17
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	95.07
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	94.87
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	94.32
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	93.94
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	93.93
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	93.45
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	92.25
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	90.44
3ded_A	113	Probable hemolysin; structural genomics, P protein	82.86

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.89  E-value=1.8e-23  Score=192.76  Aligned_cols=166  Identities=17%  Similarity=0.323  Sum_probs=98.1

Q ss_pred             cccCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccce
Q 011147          164 ALLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVP  243 (492)
Q Consensus       164 ~~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiP  243 (492)
                      ..+|++||+.+++.    +.+.|.++++|++++++++.|.+.+|+|+|+|+.++++++.++++. ++++.+.+++++++|
T Consensus         5 ~~~t~~el~~l~~~----~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~p   79 (172)
T 3lhh_A            5 DNVTQEDIQAMLQE----GSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHSRFP   79 (172)
T ss_dssp             ------------------------------------------CTTTTSEEGGGCCCEETTSCHH-HHHHHHHTCCCSEEE
T ss_pred             ccCCHHHHHHHHHH----HHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEE
Confidence            46899999999984    5567999999999999999999999999999999999999999998 999999999999999


Q ss_pred             EEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccc
Q 011147          244 IYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISS  323 (492)
Q Consensus       244 V~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~  323 (492)
                      |++++.++++|+|+.+|+++...+.            .+.+++++             + ++  +..++.+.        
T Consensus        80 Vvd~~~~~lvGivt~~dl~~~~~~~------------~~~~v~~i-------------m-~~--~~~v~~~~--------  123 (172)
T 3lhh_A           80 VCRNNVDDMVGIISAKQLLSESIAG------------ERLELVDL-------------V-KN--CNFVPNSL--------  123 (172)
T ss_dssp             EESSSTTSEEEEEEHHHHHHHHHTT------------CCCCGGGG-------------C-BC--CEEEETTC--------
T ss_pred             EEeCCCCeEEEEEEHHHHHHHHhhc------------CcccHHHH-------------h-cC--CeEeCCCC--------
Confidence            9986557999999966554333211            12234433             1 11  22234433        


Q ss_pred             hhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcCc
Q 011147          324 DIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETD  389 (492)
Q Consensus       324 ~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD  389 (492)
                                  ++.++++.|.+++.+ ++|+      |++|+++||||++|++++|+| +|.||.|
T Consensus       124 ------------~l~~a~~~m~~~~~~~~pVv------d~~g~lvGiit~~Dil~~l~~-~~~de~~  171 (172)
T 3lhh_A          124 ------------SGMELLEHFRTTGSQMVFVV------DEYGDLKGLVTLQDMMDALTG-EFFQEDG  171 (172)
T ss_dssp             ------------CHHHHHHHHHHHTCSEEEEE------CTTSCEEEEEEHHHHHHHHHT-TCC----
T ss_pred             ------------CHHHHHHHHHHcCCeEEEEE------eCCCCEEEEeeHHHHHHHHhC-CCccccC
Confidence                        366789999999999 9999      789999999999999999998 9999987

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.88  E-value=3.2e-22  Score=185.56  Aligned_cols=154  Identities=14%  Similarity=0.179  Sum_probs=120.6

Q ss_pred             cCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          182 AGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       182 ~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      ++++|.|+++|+++++++++|.+.+|+++|+|+.++++++.++++. ++++.+.+++|+++||++++.++++|+|+.+|+
T Consensus        13 ~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl   91 (173)
T 3ocm_A           13 MPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDL   91 (173)
T ss_dssp             -----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH-HHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHH
T ss_pred             HHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH-HHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHH
Confidence            3456999999999999999999999999999999999999999998 999999999999999998655799999996654


Q ss_pred             HHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHH
Q 011147          262 MAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCL  341 (492)
Q Consensus       262 m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l  341 (492)
                      ++.+.+..            ..+++               ++++  +.+++.+.                    ++.+++
T Consensus        92 ~~~~~~~~------------~~~v~---------------~~~~--~~~v~~~~--------------------~l~~al  122 (173)
T 3ocm_A           92 VADLITEG------------RVRRN---------------RLRD--PIIVHESI--------------------GILRLM  122 (173)
T ss_dssp             HHHHHHHS------------SCCGG---------------GSBC--CCEECGGG--------------------CHHHHH
T ss_pred             HHHHhcCC------------cchhH---------------hcCC--CeEECCCC--------------------cHHHHH
Confidence            43332210            11111               1111  12223332                    367889


Q ss_pred             HHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcCccch
Q 011147          342 KKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDYV  392 (492)
Q Consensus       342 ~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~~~  392 (492)
                      +.|.+++.+ ++|+      |++|+++||||++||+++|+| +|.||+|++-
T Consensus       123 ~~m~~~~~~~~~Vv------de~g~lvGiIT~~Dil~~l~~-~i~de~~~~~  167 (173)
T 3ocm_A          123 DTLKRSRGQLVLVA------DEFGAIEGLVTPIDVFEAIAG-EFPDEDELPD  167 (173)
T ss_dssp             HHHHHSTTCCEEEE------CTTCCEEEEECHHHHHHHHHC-CCCCTTSCC-
T ss_pred             HHHHHcCCeEEEEE------eCCCCEEEEEeHHHHHHHHhC-cCCCccccHh
Confidence            999999999 9999      789999999999999999999 9999999743

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.85  E-value=1e-21  Score=177.95  Aligned_cols=154  Identities=17%  Similarity=0.222  Sum_probs=123.2

Q ss_pred             ccCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceE
Q 011147          165 LLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPI  244 (492)
Q Consensus       165 ~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV  244 (492)
                      .+|++||+.+++.    ++++|.++++|+++++++++|.+.+|+|+|+|+.++++++.++++. ++++.+.+++++++||
T Consensus         2 ~~t~~el~~li~~----~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~-~a~~~m~~~~~~~~pV   76 (156)
T 3oi8_A            2 NASAEDVLNLLRQ----AHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAHSRFPV   76 (156)
T ss_dssp             CCCHHHHHHHHHH----HHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEE
T ss_pred             CCCHHHHHHHHHh----HHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH-HHHHHHHHCCCCEEEE
Confidence            3789999999995    4457999999999999999999999999999999999999999998 9999999999999999


Q ss_pred             EeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccch
Q 011147          245 YVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSD  324 (492)
Q Consensus       245 ~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~  324 (492)
                      ++++.++++|+|+.+|+++    .+...        .+.+++++              +++  +.+++.+.         
T Consensus        77 vd~~~~~lvGivt~~dl~~----~~~~~--------~~~~v~~i--------------m~~--~~~v~~~~---------  119 (156)
T 3oi8_A           77 IGEDKDEVLGILHAKDLLK----YMFNP--------EQFHLKSI--------------LRP--AVFVPEGK---------  119 (156)
T ss_dssp             ESSSTTCEEEEEEGGGGGG----GSSCG--------GGCCHHHH--------------CBC--CCEEETTS---------
T ss_pred             EcCCCCcEEEEEEHHHHHH----HHHcC--------CcccHHHH--------------cCC--CEEECCCC---------
Confidence            9865568999999666532    22110        11223322              122  22234433         


Q ss_pred             hhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHH
Q 011147          325 IDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVME  377 (492)
Q Consensus       325 l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViE  377 (492)
                                 ++.++++.|++++.+ ++|+      |++|+++||||++|++|
T Consensus       120 -----------~l~~a~~~m~~~~~~~~~Vv------d~~g~~~Givt~~Dile  156 (156)
T 3oi8_A          120 -----------SLTALLKEFREQRNHMAIVI------DEYGGTSGLVTFEDIIE  156 (156)
T ss_dssp             -----------BHHHHHHHHHHTTCCEEEEE------CTTSSEEEEEEHHHHCC
T ss_pred             -----------CHHHHHHHHHhcCCeEEEEE------CCCCCEEEEEEHHHhcC
Confidence                       367789999999999 9999      78999999999999974

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.82  E-value=4.8e-20  Score=164.66  Aligned_cols=144  Identities=15%  Similarity=0.302  Sum_probs=102.5

Q ss_pred             CCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHH
Q 011147          185 GGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAV  264 (492)
Q Consensus       185 ~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~  264 (492)
                      +|.++++|++++++++++.+.+|+|+|+|+.++++++.++++. ++++.+.+++++++||++++.++++|+|+.+|+++.
T Consensus         3 ~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~   81 (148)
T 3lv9_A            3 AGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQ   81 (148)
T ss_dssp             ---------------CGGGTCBGGGTSEETTTCCCEETTCCHH-HHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHH
T ss_pred             CCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHH-HHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHH
Confidence            5899999999999999999999999999999999999999998 999999999999999998655799999996665443


Q ss_pred             HHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHH
Q 011147          265 VVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKW  344 (492)
Q Consensus       265 vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~  344 (492)
                      +.+..            +.+++++             + ++  +..++.+.                    ++.++++.|
T Consensus        82 ~~~~~------------~~~v~~~-------------m-~~--~~~v~~~~--------------------~l~~~~~~m  113 (148)
T 3lv9_A           82 KINEN------------KIELEEI-------------L-RD--IIYISENL--------------------TIDKALERI  113 (148)
T ss_dssp             HHHHS------------CCCGGGT-------------C-BC--CEEEETTS--------------------BHHHHHHHH
T ss_pred             HhcCC------------CccHHHh-------------c-CC--CeEECCCC--------------------CHHHHHHHH
Confidence            32221            2233333             1 11  12234332                    366789999


Q ss_pred             hHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCcc
Q 011147          345 ERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEI  384 (492)
Q Consensus       345 ~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI  384 (492)
                      .+++.+ ++|+      |++|+++||||.+|++++|+| ||
T Consensus       114 ~~~~~~~l~Vv------d~~g~~~Giit~~dil~~l~~-~i  147 (148)
T 3lv9_A          114 RKEKLQLAIVV------DEYGGTSGVVTIEDILEEIVG-EI  147 (148)
T ss_dssp             HHHTCSEEEEE------CTTSSEEEEEEHHHHHHHHHH-TC
T ss_pred             HhcCCeEEEEE------eCCCCEEEEEEHHHHHHHHhC-cC
Confidence            999999 9999      789999999999999999999 65

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.81  E-value=2.3e-20  Score=168.13  Aligned_cols=147  Identities=21%  Similarity=0.263  Sum_probs=107.6

Q ss_pred             CChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEE-eCCCCceEEEEEccchHHHHH
Q 011147          188 LTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIY-VGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       188 L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~-~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      ++++|+++++++++|.+.+|+++|+|+.++++++.++++. ++++.+.+++++++||+ +++.++++|+|+.+|+++.+.
T Consensus         3 l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~   81 (153)
T 3oco_A            3 ADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR   81 (153)
T ss_dssp             -----CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHH-HHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHH-HHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh
Confidence            6788999999999999999999999999999999999998 99999999999999999 554578999999666544333


Q ss_pred             HhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhH
Q 011147          267 KCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWER  346 (492)
Q Consensus       267 k~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~  346 (492)
                      +..            +.+++++             + ++  +..++.+.                    ++.++++.|.+
T Consensus        82 ~~~------------~~~v~~~-------------m-~~--~~~v~~~~--------------------~l~~~~~~m~~  113 (153)
T 3oco_A           82 IDD------------KAKISTI-------------M-RD--IVSVPENM--------------------KVPDVMEEMSA  113 (153)
T ss_dssp             HHT------------TSBGGGT-------------C-BC--CEEEETTS--------------------BHHHHHHHHHH
T ss_pred             cCC------------CCcHHHH-------------h-CC--CeEECCCC--------------------CHHHHHHHHHH
Confidence            221            2233333             1 11  12223332                    36678999999


Q ss_pred             cCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCcCcc
Q 011147          347 QDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDETDD  390 (492)
Q Consensus       347 ~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~  390 (492)
                      ++.+ ++|+      |++|+++||||+.|++++|+| +|.||+|+
T Consensus       114 ~~~~~lpVv------d~~g~~vGivt~~dil~~l~~-~~~de~~~  151 (153)
T 3oco_A          114 HRVPMAIVI------DEYGGTSGIITDKDVYEELFG-NLRDEQDD  151 (153)
T ss_dssp             TTCSCEEEE------CTTSCEEEEECHHHHHHHHHC---------
T ss_pred             cCCcEEEEE------eCCCCEEEEeeHHHHHHHHhc-cCCCcccC
Confidence            9999 9999      789999999999999999999 99999886

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.76  E-value=8.9e-19  Score=154.78  Aligned_cols=134  Identities=19%  Similarity=0.317  Sum_probs=94.2

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhcc
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSK  282 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~  282 (492)
                      ++.+|+|+|+|+.++++++.++++. ++++.+.+++++++||++++.++++|+|+.+|+++.+.+.   .       ..+
T Consensus         1 ~~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~---~-------~~~   69 (136)
T 3lfr_A            1 ADLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKA---D-------GDS   69 (136)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSS---S-------GGG
T ss_pred             CCCChHhccccHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhc---c-------CCC
Confidence            3678999999999999999999998 9999999999999999986557999999977654322110   0       012


Q ss_pred             CCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCC
Q 011147          283 APMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPS  361 (492)
Q Consensus       283 ~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pd  361 (492)
                      .+++++              ++.  +..++.+.                    ++.++++.|++++.+ ++|+      |
T Consensus        70 ~~v~~~--------------m~~--~~~v~~~~--------------------~l~~~~~~m~~~~~~~~~Vv------d  107 (136)
T 3lfr_A           70 DDVKKL--------------LRP--ATFVPESK--------------------RLNVLLREFRANHNHMAIVI------D  107 (136)
T ss_dssp             CCGGGT--------------CBC--CCEEETTC--------------------BHHHHHHHHHHHTCCEEEEE------C
T ss_pred             cCHHHH--------------cCC--CeEECCCC--------------------cHHHHHHHHHhcCCeEEEEE------e
Confidence            233333              111  22234332                    367789999999999 9999      7


Q ss_pred             CCCcEEEEechhHHHHHHccCccCCcCcc
Q 011147          362 VDEEVIGIITLEDVMEELLQEEILDETDD  390 (492)
Q Consensus       362 e~g~vvGIITlEDViEeLlgeeI~DEtD~  390 (492)
                      ++|+++||||++|++++|+| ||.||+|+
T Consensus       108 ~~g~lvGiit~~Dil~~l~~-~~~de~~~  135 (136)
T 3lfr_A          108 EYGGVAGLVTIEDVLEQIVG-DIEDEHDV  135 (136)
T ss_dssp             TTSCEEEEEEHHHHHTTC-----------
T ss_pred             CCCCEEEEEEHHHHHHHHhC-CCcCcccC
Confidence            89999999999999999999 99999885

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.73  E-value=8.9e-18  Score=152.98  Aligned_cols=147  Identities=16%  Similarity=0.208  Sum_probs=100.0

Q ss_pred             HHhhccc-ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccch
Q 011147          195 IITGALD-MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSK  273 (492)
Q Consensus       195 iI~~vl~-l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~  273 (492)
                      ||.+.|+ |-..+++++|||+.++.+++.+++++ ++++.+.++|||++||+++ .++++|+|+.+|+++.+.+..... 
T Consensus         4 mi~~~~e~~l~~~~~~iM~P~~~v~~v~~~~t~~-~a~~~m~~~~~s~~pVvd~-~~~lvGiit~~Di~~~~~~~~~~~-   80 (156)
T 3k6e_A            4 MIAKEFETFLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTYTRVPVVTD-EKQFVGTIGLRDIMAYQMEHDLSQ-   80 (156)
T ss_dssp             HHHHHHHHHHHTTGGGGEEETTSSCCEETTSBHH-HHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCH-
T ss_pred             hHHHHHHHHhhccHHHhCcchhHeEEECCcCCHH-HHHHHHHHcCCcEEEEEcC-CCcEEEEEEecchhhhhhhccccc-
Confidence            4444443 55678999999999999999999998 9999999999999999974 478999999777665554432111 


Q ss_pred             hhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcceEE
Q 011147          274 EIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISK  353 (492)
Q Consensus       274 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~~lV  353 (492)
                         +. ..+.++.++             +.++.  ..++.+.                    ++.++++.|.+++. ++|
T Consensus        81 ---~~-~~~~~v~~i-------------m~~~~--~~v~~~~--------------------~l~~~~~~m~~~~~-lpV  120 (156)
T 3k6e_A           81 ---EI-MADTDIVHM-------------TKTDV--AVVSPDF--------------------TITEVLHKLVDESF-LPV  120 (156)
T ss_dssp             ---HH-HTTSBGGGT-------------CBCSC--CCBCTTC--------------------CHHHHHHHTTTSSE-EEE
T ss_pred             ---cc-ccccCHHHh-------------hcCCc--eeccccc--------------------HHHHHHHHHHHcCC-eEE
Confidence               00 112333333             11111  1123222                    36678999986532 888


Q ss_pred             ecccCCCCCCCcEEEEechhHHHHHHccCccCCcCccc
Q 011147          354 EELESLPSVDEEVIGIITLEDVMEELLQEEILDETDDY  391 (492)
Q Consensus       354 v~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~~  391 (492)
                      +      |++|+++||||++||++++.+ .+.|..|+|
T Consensus       121 V------d~~g~l~GiiT~~Dil~~~~~-~~~~~~~e~  151 (156)
T 3k6e_A          121 V------DAEGIFQGIITRKSILKAVNA-LLHDFSKEY  151 (156)
T ss_dssp             E------CTTSBEEEEEEHHHHHHHHHH-HSCC-----
T ss_pred             E------ecCCEEEEEEEHHHHHHHHHH-Hhcccchhh
Confidence            8      899999999999999999965 444444444

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.70  E-value=1.5e-17  Score=146.00  Aligned_cols=128  Identities=19%  Similarity=0.254  Sum_probs=94.4

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccC
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKA  283 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~  283 (492)
                      +.+|+|+|+|+.++++++.++++. ++++.+.+++++++||++++.++++|+|+.+|+++.+.+....         ...
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~---------~~~   70 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEF---------TKE   70 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHH-HHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCC---------CHH
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHH-HHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCcc---------chh
Confidence            368999999999999999999998 9999999999999999976567899999966543332211000         000


Q ss_pred             CCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCC
Q 011147          284 PMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSV  362 (492)
Q Consensus       284 ~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde  362 (492)
                      +++              .++++  +.+++.+.                    ++.++++.|++++.+ ++|+      |+
T Consensus        71 ~v~--------------~~m~~--~~~v~~~~--------------------~l~~~~~~m~~~~~~~~~Vv------d~  108 (130)
T 3hf7_A           71 IML--------------RAADE--IYFVPEGT--------------------PLSTQLVKFQRNKKKVGLVV------DE  108 (130)
T ss_dssp             HHH--------------HHSBC--CCEEETTC--------------------BHHHHHHHHHHHCCCEEEEE------CT
T ss_pred             hHH--------------HhccC--CeEeCCCC--------------------cHHHHHHHHHhcCCeEEEEE------cC
Confidence            111              12211  22234332                    366789999999999 9999      78


Q ss_pred             CCcEEEEechhHHHHHHccCcc
Q 011147          363 DEEVIGIITLEDVMEELLQEEI  384 (492)
Q Consensus       363 ~g~vvGIITlEDViEeLlgeeI  384 (492)
                      +|+++||||.+|++++|+| ||
T Consensus       109 ~g~lvGiit~~Dil~~l~g-~i  129 (130)
T 3hf7_A          109 YGDIQGLVTVEDILEEIVG-DF  129 (130)
T ss_dssp             TSCEEEEEEHHHHHHHHHC---
T ss_pred             CCCEEEEeeHHHHHHHHhC-CC
Confidence            9999999999999999999 65

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.69  E-value=7.9e-17  Score=140.75  Aligned_cols=126  Identities=23%  Similarity=0.357  Sum_probs=96.0

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS  281 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~  281 (492)
                      ..+.+|+|+|+|+.++++++.++++. ++++.+.+++++++||++++.++++|+|+.+|+++    .+..         .
T Consensus         2 ~~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~----~~~~---------~   67 (129)
T 3jtf_A            2 NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLR----YMLE---------P   67 (129)
T ss_dssp             --CCBHHHHCEEGGGCCCEETTSCHH-HHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGG----GGTC---------T
T ss_pred             CCCCCHHHhCccHHHeEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHh----Hhcc---------C
Confidence            36789999999999999999999998 99999999999999999865579999999666532    2211         1


Q ss_pred             cCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCC
Q 011147          282 KAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLP  360 (492)
Q Consensus       282 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~p  360 (492)
                      +.+++++              ++.  +..++.+.                    ++.++++.|.+++.+ ++|+      
T Consensus        68 ~~~v~~~--------------m~~--~~~v~~~~--------------------~l~~~~~~m~~~~~~~~pVv------  105 (129)
T 3jtf_A           68 ALDIRSL--------------VRP--AVFIPEVK--------------------RLNVLLREFRASRNHLAIVI------  105 (129)
T ss_dssp             TSCGGGG--------------CBC--CCEEETTC--------------------BHHHHHHHHHTSSCCEEEEE------
T ss_pred             CcCHHHH--------------hCC--CeEeCCCC--------------------cHHHHHHHHHhcCCeEEEEE------
Confidence            2233333              111  22233332                    367789999999999 9999      


Q ss_pred             CCCCcEEEEechhHHHHHHccCcc
Q 011147          361 SVDEEVIGIITLEDVMEELLQEEI  384 (492)
Q Consensus       361 de~g~vvGIITlEDViEeLlgeeI  384 (492)
                      |++|+++||||++|++++|+| ||
T Consensus       106 d~~g~~~Giit~~Dil~~l~g-ei  128 (129)
T 3jtf_A          106 DEHGGISGLVTMEDVLEQIVG-DI  128 (129)
T ss_dssp             CC-CCEEEEEEHHHHHHHHHH-TC
T ss_pred             eCCCCEEEEEEHHHHHHHHhC-CC
Confidence            788999999999999999999 65

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.69  E-value=4.2e-17  Score=142.54  Aligned_cols=128  Identities=16%  Similarity=0.198  Sum_probs=94.9

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhh
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEK  280 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~  280 (492)
                      +|.+.+|+|+|+|+.++++++.++++. ++++.+.+++++++||++++.++++|+|+.+|+++.+.+..           
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~-----------   69 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS-----------   69 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHH-HHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT-----------
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC-----------
Confidence            478899999999999999999999998 99999999999999999865579999999665543332211           


Q ss_pred             ccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCC
Q 011147          281 SKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESL  359 (492)
Q Consensus       281 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~  359 (492)
                      .+.+++++              +++  +..++.+.                    ++.++++.|.+++.+ ++|+     
T Consensus        70 ~~~~v~~~--------------m~~--~~~v~~~~--------------------~l~~~~~~m~~~~~~~~~Vv-----  108 (130)
T 3i8n_A           70 GQKQLGAV--------------MRP--IQVVLNNT--------------------ALPKVFDQMMTHRLQLALVV-----  108 (130)
T ss_dssp             TTSBHHHH--------------SEE--CCEEETTS--------------------CHHHHHHHHHHHTCCEEEEE-----
T ss_pred             CcCCHHHH--------------hcC--CcCcCCCC--------------------cHHHHHHHHHHcCCeEEEEE-----
Confidence            12223332              111  12233332                    366789999999999 9999     


Q ss_pred             CCCCCcEEEEechhHHHHHHccC
Q 011147          360 PSVDEEVIGIITLEDVMEELLQE  382 (492)
Q Consensus       360 pde~g~vvGIITlEDViEeLlge  382 (492)
                       |++|+++||||++|++++|+||
T Consensus       109 -d~~g~~vGivt~~dil~~l~ge  130 (130)
T 3i8n_A          109 -DEYGTVLGLVTLEDIFEHLVGE  130 (130)
T ss_dssp             -CTTSCEEEEEEHHHHHHHHHTC
T ss_pred             -cCCCCEEEEEEHHHHHHHHcCC
Confidence             7899999999999999999983

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.66  E-value=1.4e-16  Score=138.62  Aligned_cols=125  Identities=20%  Similarity=0.305  Sum_probs=92.8

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhcc
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSK  282 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~  282 (492)
                      ++.+|+|+|+|+.++++++.++++. ++++.+.+++++++||++++.++++|+|+.+|+++.    +...       ..+
T Consensus         1 ~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~----~~~~-------~~~   68 (127)
T 3nqr_A            1 ADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF----MRSD-------AEA   68 (127)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGG----GSTT-------CCC
T ss_pred             CCcCHHHhcccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHH----Hhcc-------CCC
Confidence            3678999999988899999999998 999999999999999998655799999997765332    2110       012


Q ss_pred             CCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCC
Q 011147          283 APMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPS  361 (492)
Q Consensus       283 ~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pd  361 (492)
                      .+++++              ++.  +..++.+.                    ++.++++.|.+++.+ ++|+      |
T Consensus        69 ~~v~~~--------------m~~--~~~v~~~~--------------------~l~~a~~~m~~~~~~~lpVv------d  106 (127)
T 3nqr_A           69 FSMDKV--------------LRT--AVVVPESK--------------------RVDRMLKEFRSQRYHMAIVI------D  106 (127)
T ss_dssp             CCHHHH--------------CBC--CCEEETTC--------------------BHHHHHHHHHHTTCCEEEEE------C
T ss_pred             CCHHHH--------------cCC--CeEECCCC--------------------cHHHHHHHHHhcCCeEEEEE------e
Confidence            223322              111  12233332                    367789999999999 9999      7


Q ss_pred             CCCcEEEEechhHHHHHHcc
Q 011147          362 VDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       362 e~g~vvGIITlEDViEeLlg  381 (492)
                      ++|+++||||++|++++|+|
T Consensus       107 ~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A          107 EFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             TTSCEEEEEEHHHHHHHC--
T ss_pred             CCCCEEEEEEHHHHHHHHhC
Confidence            89999999999999999998

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.56  E-value=4.6e-14  Score=134.27  Aligned_cols=146  Identities=10%  Similarity=0.090  Sum_probs=111.9

Q ss_pred             cCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHc---CCccc
Q 011147          166 LRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISN---GHSRV  242 (492)
Q Consensus       166 ~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~---~~SRi  242 (492)
                      +.+++.+.++.          .++++|++++++++.+.+.+|+++|+|  ++++++.+.++. ++++.+.+.   +++.+
T Consensus        25 l~~~~~~~~l~----------~l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-eal~~~~~~~~~~~~~~   91 (205)
T 3kxr_A           25 LPESFTDRALA----------QMGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVA-QAQRFFRRIELDCNDNL   91 (205)
T ss_dssp             SCHHHHHHHHH----------HSCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHH-HHHHHHHHCCCTTCCEE
T ss_pred             CCHHHHHHHHH----------cCCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHH-HHHHHHHhhCccCeeEE
Confidence            45566666665          268999999999999999999999997  788999999998 999999986   78899


Q ss_pred             eEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCccc
Q 011147          243 PIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVIS  322 (492)
Q Consensus       243 PV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~  322 (492)
                      ||+++ .++++|+|+.+|    +++..           .+.+++++             +.+.  +.+++.+.       
T Consensus        92 ~Vvd~-~~~lvGivt~~d----ll~~~-----------~~~~v~~i-------------m~~~--~~~v~~~~-------  133 (205)
T 3kxr_A           92 FIVDE-ADKYLGTVRRYD----IFKHE-----------PHEPLISL-------------LSED--SRALTANT-------  133 (205)
T ss_dssp             EEECT-TCBEEEEEEHHH----HTTSC-----------TTSBGGGG-------------CCSS--CCCEETTS-------
T ss_pred             EEEcC-CCeEEEEEEHHH----HHhCC-----------CcchHHHH-------------hcCC--CeEECCCC-------
Confidence            99974 578999998333    22211           12234443             2111  12234332       


Q ss_pred             chhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          323 SDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       323 ~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                                   ++.++++.|++++.+ ++|+      |++|+++||||.+||++.+.+
T Consensus       134 -------------~l~~a~~~m~~~~~~~lpVV------D~~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          134 -------------TLLDAAEAIEHSREIELPVI------DDAGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             -------------CHHHHHHHHHTSSCSEEEEE------CTTSBEEEEEEHHHHHHHHHH
T ss_pred             -------------CHHHHHHHHHhcCCCEEEEE------cCCCeEEEEEEHHHHHHHHHH
Confidence                         366789999999999 9999      789999999999999999975

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.50  E-value=9.5e-14  Score=137.60  Aligned_cols=136  Identities=10%  Similarity=0.129  Sum_probs=105.2

Q ss_pred             CCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHc-----CCccceEEeCCCCceEEEEEccc
Q 011147          186 GELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISN-----GHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       186 g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~-----~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      |.++..++..+.+++.+.+.+|+++|+|  ++++++.+.++. ++++.+.++     +++++||++++ ++++|+|+.+|
T Consensus       116 ~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~d  191 (278)
T 2yvy_A          116 DLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRD  191 (278)
T ss_dssp             HHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH-HHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHH
T ss_pred             HcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH-HHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHH
Confidence            3578899999999999999999999997  788999999998 999999987     68999999753 78999998443


Q ss_pred             hHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHH
Q 011147          261 HMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLC  340 (492)
Q Consensus       261 ~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~  340 (492)
                          +++..           .+.+++++             +.+.  +.+++.+.                    ++.++
T Consensus       192 ----ll~~~-----------~~~~v~~i-------------m~~~--~~~v~~~~--------------------~l~~a  221 (278)
T 2yvy_A          192 ----LIVAD-----------PRTRVAEI-------------MNPK--VVYVRTDT--------------------DQEEV  221 (278)
T ss_dssp             ----HHHSC-----------TTCBSTTT-------------SBSS--CCCEETTS--------------------BHHHH
T ss_pred             ----HhcCC-----------CCCcHHHH-------------hCCC--CeEEeCCC--------------------CHHHH
Confidence                23221           12344444             1111  12234332                    36678


Q ss_pred             HHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          341 LKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       341 l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      ++.|++++.+ ++|+      |++|+++||||.+||++.+.+
T Consensus       222 ~~~m~~~~~~~lpVv------d~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          222 ARLMADYDFTVLPVV------DEEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             HHHHHHHTCSEEEEE------CTTSBEEEEEEHHHHHHHC--
T ss_pred             HHHHHhcCCCEEEEE------eCCCeEEEEEEHHHHHHHHHH
Confidence            9999999999 9999      789999999999999999987

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.48  E-value=1.6e-13  Score=146.50  Aligned_cols=153  Identities=10%  Similarity=0.118  Sum_probs=118.3

Q ss_pred             ccCHHHHHHHHHhhccccCCC---------CCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHH
Q 011147          165 LLRRAELKTLVDMHGNEAGKG---------GELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLII  235 (492)
Q Consensus       165 ~~s~eEL~~lv~~~~~e~~~~---------g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~  235 (492)
                      .++.+|+..+++..    .++         +.++.+|++.+++++++.+.+|+++|+|  ++++++.++++. ++++.+.
T Consensus       110 ~l~~dd~~~ll~~l----~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~-ea~~~~~  182 (473)
T 2zy9_A          110 ELSLDDLADALQAV----RKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR  182 (473)
T ss_dssp             HSCHHHHHHHHHHH----HHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHH-HHHHHHH
T ss_pred             hCCHHHHHHHHHhC----CHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHH-HHHHHHH
Confidence            35677888777742    223         6899999999999999999999999997  899999999998 9999999


Q ss_pred             Hc-----CCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccc
Q 011147          236 SN-----GHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQ  310 (492)
Q Consensus       236 ~~-----~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~  310 (492)
                      ++     +++++||++++ ++++|+|+.+|+    ++..           .+.+++++             +.+.  +.+
T Consensus       183 ~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dl----l~~~-----------~~~~v~di-------------m~~~--~~~  231 (473)
T 2zy9_A          183 RAAPDAETIYYIYVVDEK-GRLKGVLSLRDL----IVAD-----------PRTRVAEI-------------MNPK--VVY  231 (473)
T ss_dssp             HHGGGCSEEEEEEEECTT-SBEEEEEEHHHH----HHSC-----------TTSBGGGT-------------SBSS--CCC
T ss_pred             hccCCcCceeEEEEECCC-CcEEEEEEHHHH----hcCC-----------CCCcHHHH-------------hCCC--CeE
Confidence            87     47999999854 789999984432    3211           12344444             2111  222


Q ss_pred             cCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          311 FNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       311 vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      ++.+.                    ++.++++.|++++.+ ++|+      |++|+++||||.+|+++.+.+
T Consensus       232 v~~~~--------------------~l~ea~~~m~~~~~~~lpVV------De~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          232 VRTDT--------------------DQEEVARLMADYDFTVLPVV------DEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             EESSS--------------------BHHHHHHHHHHHTCSEEEEE------CTTSBEEEEEEHHHHHHHHHH
T ss_pred             EeCCC--------------------cHHHHHHHHHhcCCcEEEEE------cCCCEEEEEEehHhhHHHHHH
Confidence            34443                    366789999999999 9999      899999999999999999976

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.48  E-value=8.4e-14  Score=139.94  Aligned_cols=162  Identities=11%  Similarity=0.140  Sum_probs=109.4

Q ss_pred             CCCChhHHHHHhhcccc-cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHH
Q 011147          186 GELTHDETTIITGALDM-TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAV  264 (492)
Q Consensus       186 g~L~~~E~~iI~~vl~l-~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~  264 (492)
                      +.++++|+++++++++| ++.+|+|+|+|+.++++++.++++. ++++.+.+++|+++|||+++.++++|+|+.+|++..
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~-~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~   80 (334)
T 2qrd_G            2 MDVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNV   80 (334)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHH-HHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHH
Confidence            34668899999999995 5599999999999999999999998 999999999999999999777899999997766544


Q ss_pred             HHHhhccchhhHHh--hhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHH
Q 011147          265 VVKCKNDSKEIAEM--EKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLK  342 (492)
Q Consensus       265 vvk~l~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~  342 (492)
                      +........ .++.  ...+.+++.+..+      -...+.+....+.++.+.                    ++.++++
T Consensus        81 ~~~~~~~~~-~~~~~~~~~~~~~~~i~~~------l~~im~~~~~~~~v~~~~--------------------~~~~a~~  133 (334)
T 2qrd_G           81 IKYYYQSSS-FPEAIAEIDKFRLLGLREV------ERKIGAIPPETIYVHPMH--------------------SLMDACL  133 (334)
T ss_dssp             HHHHHHHCS-CGGGGGGGGSCBHHHHHHH------HHHHTCSCSSCCCBCTTS--------------------BHHHHHH
T ss_pred             HHHHhhccC-CccHHHHHhhhchhhHHHH------HHhhccCCCceeeeCCCC--------------------cHHHHHH
Confidence            432211000 0000  0001111111000      000011111012233332                    2667899


Q ss_pred             HHhHcCcc-eEEecccCCCCCCCc-----EEEEechhHHHHHHcc
Q 011147          343 KWERQDVK-ISKEELESLPSVDEE-----VIGIITLEDVMEELLQ  381 (492)
Q Consensus       343 ~~~~~~~~-~lVv~~~~~pde~g~-----vvGIITlEDViEeLlg  381 (492)
                      .|++.+.+ ++|+      |++|+     ++|+||.+|+++.+.+
T Consensus       134 ~~~~~~~~~~~Vv------d~~~~~~~~~~~Givt~~dl~~~~~~  172 (334)
T 2qrd_G          134 AMSKSRARRIPLI------DVDGETGSEMIVSVLTQYRILKFISM  172 (334)
T ss_dssp             HHHHSCCSEEEEE------EEETTTTEEEEEEEEEHHHHHHHHHH
T ss_pred             HHHHCCceEEEEE------eCCCCcCccceEEEeeHHHHHHHHHh
Confidence            99999998 9999      56654     9999999999999875

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.47  E-value=8.3e-14  Score=127.31  Aligned_cols=145  Identities=16%  Similarity=0.169  Sum_probs=96.9

Q ss_pred             HHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhcc
Q 011147          192 ETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKND  271 (492)
Q Consensus       192 E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~  271 (492)
                      +++.+.+.  +++.+|+|+|++  ++++++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+++.+......
T Consensus         7 ~~~~~~~~--l~~~~V~diM~~--~v~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dll~~~~~~~~~   80 (170)
T 4esy_A            7 RRRAIARA--IRQVPIRDILTS--PVVTVREDDTLD-AVAKTMLEHQIGCAPVVDQ-NGHLVGIITESDFLRGSIPFWIY   80 (170)
T ss_dssp             HHHHHHHH--HHTSBGGGGCCS--CCCCEETTSBHH-HHHHHHHHTTCSEEEEECT-TSCEEEEEEGGGGGGGTCCTTHH
T ss_pred             HHHHHHHH--HcCCCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCeEEEEEcC-CccEEEEEEHHHHHHHHhhcccc
Confidence            44445544  468899999985  789999999998 9999999999999999975 47899999988765432211100


Q ss_pred             chhhH-------------HhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHH
Q 011147          272 SKEIA-------------EMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLH  338 (492)
Q Consensus       272 ~~~~~-------------~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~  338 (492)
                      .....             .....+.+++++             |.++.  ..+..+                    .++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-------------m~~~~--~tv~~~--------------------~~l~  125 (170)
T 4esy_A           81 EASEILSRAIPAPEVEHLFETGRKLTASAV-------------MTQPV--VTAAPE--------------------DSVG  125 (170)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHHTTCBHHHH-------------CBCCS--CCBCTT--------------------SBHH
T ss_pred             chhhhhhhccchhhHHhhhccccccchhhh-------------cccCc--ccCCcc--------------------hhHH
Confidence            00000             000001111111             11111  111222                    2377


Q ss_pred             HHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCcc
Q 011147          339 LCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEI  384 (492)
Q Consensus       339 ~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI  384 (492)
                      +|++.|.+++.+ ++|+      | +|+++||||..||++.|+.+|-
T Consensus       126 ~a~~~m~~~~~~~lpVv------d-~g~lvGivt~~Dil~~l~~~~~  165 (170)
T 4esy_A          126 SIADQMRRHGIHRIPVV------Q-DGVPVGIVTRRDLLKLLLLEES  165 (170)
T ss_dssp             HHHHHHHHTTCSEEEEE------E-TTEEEEEEEHHHHTTTSCCC--
T ss_pred             HHHHHHHHcCCcEEEEE------E-CCEEEEEEEHHHHHHHHHhccC
Confidence            889999999999 9999      4 6999999999999999998654

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.47  E-value=1.4e-13  Score=138.26  Aligned_cols=160  Identities=12%  Similarity=0.169  Sum_probs=105.7

Q ss_pred             CCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          183 GKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       183 ~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      +.+|.+.+.+++.+.+.  |.+.+|+|+|+|+.++++++.++++. ++++.+.+++|+++||++++.++++|+|+.+|++
T Consensus        15 ~~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~-~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll   91 (330)
T 2v8q_E           15 EHSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI   91 (330)
T ss_dssp             --------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHH
T ss_pred             hHhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHH-HHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHH
Confidence            34577888888888887  67889999999999999999999998 9999999999999999998768899999977766


Q ss_pred             HHHHHhhccchhhHHhhhccCCCcccccccchhhhhhcc-ccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHH
Q 011147          263 AVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGE-LKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCL  341 (492)
Q Consensus       263 ~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~-~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l  341 (492)
                      +.+.+...    .++.  ......+. .+.. -....+. +.+.  ...++.+.                    ++.+++
T Consensus        92 ~~l~~~~~----~~~~--~~~~l~~~-~~~~-~~~~~~~im~~~--~~~v~~~~--------------------~~~~a~  141 (330)
T 2v8q_E           92 NILHRYYK----SALV--QIYELEEH-KIET-WREVYLQDSFKP--LVCISPNA--------------------SLFDAV  141 (330)
T ss_dssp             HHHHHHHH----HHTT--TCCCGGGC-BHHH-HHHHHSSSSCCC--CCCBCTTS--------------------BHHHHH
T ss_pred             HHHHHHHh----cccc--chhHHhhc-cHHH-HHHHHhhcccCC--ceEeCCCC--------------------CHHHHH
Confidence            54443211    1100  00000011 0000 0000011 1111  12223332                    366789


Q ss_pred             HHHhHcCcc-eEEecccCCCCC-CCcEEEEechhHHHHHHcc
Q 011147          342 KKWERQDVK-ISKEELESLPSV-DEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       342 ~~~~~~~~~-~lVv~~~~~pde-~g~vvGIITlEDViEeLlg  381 (492)
                      +.|.+++.+ ++|+      |+ +|+++|+||.+|+++.+.+
T Consensus       142 ~~~~~~~~~~~~Vv------d~~~~~~~Givt~~dl~~~~~~  177 (330)
T 2v8q_E          142 SSLIRNKIHRLPVI------DPESGNTLYILTHKRILKFLKL  177 (330)
T ss_dssp             HHHHHHTCSCEEEE------CTTTCCEEEEECHHHHHHHHHH
T ss_pred             HHHHHCCCCeEEEE------eCCCCcEEEEEcHHHHHHHHHH
Confidence            999999999 9999      67 8999999999999998864

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.44  E-value=1e-13  Score=138.71  Aligned_cols=158  Identities=11%  Similarity=0.185  Sum_probs=113.1

Q ss_pred             CCCCCChhHHHHHhhcccc-cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          184 KGGELTHDETTIITGALDM-TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       184 ~~g~L~~~E~~iI~~vl~l-~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      +.|.++++|+++++++++| .+.+|+|+|+|+.++++++.++++. ++++.+.+++++++||++++.++++|+++.+|++
T Consensus         8 ~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~-~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~   86 (323)
T 3t4n_C            8 SQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVK-KSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFI   86 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHH-HHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHH
Confidence            4577889999999999998 9999999999999999999999998 9999999999999999998778999999977665


Q ss_pred             HHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccc-----cccccccCCCCCCCCcccchhhhhhhhhhhhhH
Q 011147          263 AVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKG-----NVQNEQFNAYMNSPSVISSDIDIQSSMAKSADL  337 (492)
Q Consensus       263 ~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~-----~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl  337 (492)
                      ..+.......    +.   ...+++. .     ......+.+     ....+.++.+.                    ++
T Consensus        87 ~~l~~~~~~~----~~---~~~l~~~-~-----~~~v~~i~~~~~~~~~~~v~v~~~~--------------------~l  133 (323)
T 3t4n_C           87 NVIQYYFSNP----DK---FELVDKL-Q-----LDGLKDIERALGVDQLDTASIHPSR--------------------PL  133 (323)
T ss_dssp             HHHHHHHHCG----GG---GGGGGGC-B-----HHHHHHHHHHTTC----CCCBCTTS--------------------BH
T ss_pred             HHHHHHHcCc----ch---hHHHHHH-H-----HHHHHHHHHHhCCCCCCceEeCCCC--------------------cH
Confidence            5443322110    00   0000000 0     000000000     01112223322                    36


Q ss_pred             HHHHHHHhHcCcc-eEEecccCCCCCCCc-----EEEEechhHHHHHHcc
Q 011147          338 HLCLKKWERQDVK-ISKEELESLPSVDEE-----VIGIITLEDVMEELLQ  381 (492)
Q Consensus       338 ~~~l~~~~~~~~~-~lVv~~~~~pde~g~-----vvGIITlEDViEeLlg  381 (492)
                      .++++.|.+++.+ ++|+      |++|+     ++|+||.+|+++.+.+
T Consensus       134 ~~a~~~m~~~~~~~lpVv------d~~~~~~~~~l~Givt~~di~~~l~~  177 (323)
T 3t4n_C          134 FEACLKMLESRSGRIPLI------DQDEETHREIVVSVLTQYRILKFVAL  177 (323)
T ss_dssp             HHHHHHHHHHTCSEEEEE------EECTTTCCEEEEEEEEHHHHHHHHHH
T ss_pred             HHHHHHHHhCCeeEEEEE------ecCCCCCccceEEEecHHHHHHHHHh
Confidence            6789999999999 9999      56665     9999999999999875

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.39  E-value=1.3e-12  Score=118.56  Aligned_cols=140  Identities=11%  Similarity=0.145  Sum_probs=99.0

Q ss_pred             hhcccccccccccccccC-cceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhh
Q 011147          197 TGALDMTQKTAKDAMTAM-SKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEI  275 (492)
Q Consensus       197 ~~vl~l~~~~V~diMtPr-~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~  275 (492)
                      ...-.+...+|+|+|+|+ .++.+++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+++.+.+....    
T Consensus        16 ~~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~----   89 (165)
T 3fhm_A           16 NLYFQGMATFVKDLLDRKGRDVVTVGPDVSIG-EAAGTLHAHKIGAVVVTDA-DGVVLGIFTERDLVKAVAGQGAA----   89 (165)
T ss_dssp             CCCCSSSSCBHHHHHHHHCSCCCEECTTSBHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHGGG----
T ss_pred             hhhHhhhhcCHHHHhccCCCCCeEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHhcCCc----
Confidence            344568889999999986 6788999999998 9999999999999999974 37899999977665554433100    


Q ss_pred             HHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEe
Q 011147          276 AEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKE  354 (492)
Q Consensus       276 ~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv  354 (492)
                          ..+.+++++             +.+.  ...++.+                    .++.++++.|.+.+.+ ++|+
T Consensus        90 ----~~~~~v~~~-------------m~~~--~~~v~~~--------------------~~l~~a~~~m~~~~~~~lpVv  130 (165)
T 3fhm_A           90 ----SLQQSVSVA-------------MTKN--VVRCQHN--------------------STTDQLMEIMTGGRFRHVPVE  130 (165)
T ss_dssp             ----GGTSBGGGT-------------SBSS--CCCBCTT--------------------CBHHHHHHHHHHHTCSEEEEE
T ss_pred             ----cccCCHHHH-------------hcCC--CeEECCC--------------------CcHHHHHHHHHHcCCCEEEEE
Confidence                112334443             1111  1112222                    1367789999999988 9999


Q ss_pred             cccCCCCCCCcEEEEechhHHHHHHccCccCCcCc
Q 011147          355 ELESLPSVDEEVIGIITLEDVMEELLQEEILDETD  389 (492)
Q Consensus       355 ~~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD  389 (492)
                            |+ |+++|+||..||++.+.+ ++.++.+
T Consensus       131 ------d~-g~~~Giit~~dil~~~~~-~~~~~~~  157 (165)
T 3fhm_A          131 ------EN-GRLAGIISIGDVVKARIG-EIEAEAE  157 (165)
T ss_dssp             ------ET-TEEEEEEEHHHHHHHTTC-C------
T ss_pred             ------EC-CEEEEEEEHHHHHHHHHH-HHHHHHH
Confidence                  66 999999999999999987 5554433

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.39  E-value=1.9e-12  Score=115.72  Aligned_cols=147  Identities=14%  Similarity=0.128  Sum_probs=94.0

Q ss_pred             HhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhh
Q 011147          196 ITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEI  275 (492)
Q Consensus       196 I~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~  275 (492)
                      ..+...|.+.+|+|+|+|+.++.+++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+    .+.+......
T Consensus         2 ~~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl----~~~~~~~~~~   75 (157)
T 2emq_A            2 TWEHNEFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDT-SYKLHGLISMTMM----MDAILGLERI   75 (157)
T ss_dssp             --------CCBSTTTCEEGGGSCCBCTTSBHH-HHHHHHHHSSSSEEEEECT-TCCEEEEEEHHHH----HHHSBCSSSB
T ss_pred             chhHhhHhhCcHHhhccCCccceEECCCCcHH-HHHHHHHHCCceEEEEEcC-CCCEEEEeeHHHH----HHHHhccccc
Confidence            34566788999999999888889999999998 9999999999999999975 3789999995554    3333210000


Q ss_pred             HHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcceEEec
Q 011147          276 AEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEE  355 (492)
Q Consensus       276 ~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~~lVv~  355 (492)
                      ........+++++             +.+.  +..++.+.                    ++.++++.|.+.+. ++|+ 
T Consensus        76 ~~~~~~~~~v~~~-------------m~~~--~~~v~~~~--------------------~l~~a~~~m~~~~~-l~Vv-  118 (157)
T 2emq_A           76 EFERLETMKVEEV-------------MNRN--IPRLRLDD--------------------SLMKAVGLIVNHPF-VCVE-  118 (157)
T ss_dssp             CGGGGGTCBGGGT-------------CBCC--CCEEETTS--------------------BHHHHHHHHHHSSE-EEEE-
T ss_pred             chHHhcCCcHHHH-------------hCCC--CceecCCC--------------------cHHHHHHHHhhCCE-EEEE-
Confidence            0000012223322             1111  11123222                    36778999999876 8898 


Q ss_pred             ccCCCCCCCcEEEEechhHHHHHHccCccCCcCccc
Q 011147          356 LESLPSVDEEVIGIITLEDVMEELLQEEILDETDDY  391 (492)
Q Consensus       356 ~~~~pde~g~vvGIITlEDViEeLlgeeI~DEtD~~  391 (492)
                           |++|+++|+||..|+++.+.+ ...+..+.+
T Consensus       119 -----d~~g~~~Giit~~dil~~~~~-~~~~~~~~~  148 (157)
T 2emq_A          119 -----NDDGYFAGIFTRREVLKQLNK-QLHRPNGGR  148 (157)
T ss_dssp             -----CSSSSEEEEEEHHHHHHHHHH-TTCCC----
T ss_pred             -----cCCCeEEEEEEHHHHHHHHHH-Hhhccccce
Confidence                 788999999999999999987 554444443

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.38  E-value=8.8e-13  Score=117.19  Aligned_cols=134  Identities=16%  Similarity=0.147  Sum_probs=94.4

Q ss_pred             ccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhh
Q 011147          200 LDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEME  279 (492)
Q Consensus       200 l~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~  279 (492)
                      -.|.+.+|+|+|+|..++.+++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+    ++.+..........
T Consensus        10 ~~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl----~~~~~~~~~~~~~~   83 (150)
T 3lqn_A           10 DEFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDP-MYKLHGLISTAMI----LDGILGLERIEFER   83 (150)
T ss_dssp             HHHHHCBHHHHSEEGGGSCCBCTTSBHH-HHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHH----HHHTBCSSSBCGGG
T ss_pred             HhhhcCChhhcccCCCceEEECCCCcHH-HHHHHHHHcCCcEEEEECC-CCCEEEEEEHHHH----HHHHHhhcccchhH
Confidence            3478899999999988899999999998 9999999999999999975 3789999996654    33332110000000


Q ss_pred             hccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcceEEecccCC
Q 011147          280 KSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESL  359 (492)
Q Consensus       280 ~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~~lVv~~~~~  359 (492)
                      ..+.++.++             +.+.  +..++.+.                    ++.++++.|.+++. ++|+     
T Consensus        84 ~~~~~v~~~-------------m~~~--~~~v~~~~--------------------~l~~a~~~~~~~~~-l~Vv-----  122 (150)
T 3lqn_A           84 LEEMKVEQV-------------MKQD--IPVLKLED--------------------SFAKALEMTIDHPF-ICAV-----  122 (150)
T ss_dssp             GGGCBGGGT-------------CBSS--CCEEETTC--------------------BHHHHHHHHHHCSE-EEEE-----
T ss_pred             HhcCCHHHH-------------hcCC--CceeCCCC--------------------CHHHHHHHHHhCCE-EEEE-----
Confidence            112233332             1111  11122222                    36678999988776 8898     


Q ss_pred             CCCCCcEEEEechhHHHHHHcc
Q 011147          360 PSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       360 pde~g~vvGIITlEDViEeLlg  381 (492)
                       |++|+++||||..|+++.+.+
T Consensus       123 -d~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A          123 -NEDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             -CTTCBEEEEEEHHHHHHHHHH
T ss_pred             -CCCCcEEEEEEHHHHHHHHHH
Confidence             789999999999999999976

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.35  E-value=4.1e-12  Score=111.06  Aligned_cols=132  Identities=16%  Similarity=0.191  Sum_probs=93.8

Q ss_pred             ccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhh
Q 011147          200 LDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEME  279 (492)
Q Consensus       200 l~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~  279 (492)
                      +.|.+.+|+++|++  ++.+++.++++. ++++.+.+++++.+||+++ .++++|+|+.+|+    ++.....+.     
T Consensus         2 ~~l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl----~~~~~~~~~-----   68 (138)
T 2yzi_A            2 VMDMKAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVIND-DGNVVGFFTKSDI----IRRVIVPGL-----   68 (138)
T ss_dssp             -CCTTSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHH----HHHTTTTCC-----
T ss_pred             cchhhhhHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHH----HHHHHhcCC-----
Confidence            46888999999985  778899999998 9999999999999999974 3789999995543    322111000     


Q ss_pred             hccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccC
Q 011147          280 KSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELES  358 (492)
Q Consensus       280 ~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~  358 (492)
                      ..+.++.++             +.+.  +..++.+.                    ++.++++.|.+++.+ + |+    
T Consensus        69 ~~~~~v~~~-------------m~~~--~~~v~~~~--------------------~l~~~~~~m~~~~~~~l-Vv----  108 (138)
T 2yzi_A           69 PYDIPVERI-------------MTRN--LITANVNT--------------------PLGEVLRKMAEHRIKHI-LI----  108 (138)
T ss_dssp             CTTSBGGGT-------------CBCS--CCEEETTS--------------------BHHHHHHHHHHHTCSEE-EE----
T ss_pred             cccCCHHHH-------------hhCC--CeEECCCC--------------------cHHHHHHHHHhcCCCEE-EE----
Confidence            012233333             1111  11123222                    367789999999998 8 98    


Q ss_pred             CCCCCCcEEEEechhHHHHHHccCccCCc
Q 011147          359 LPSVDEEVIGIITLEDVMEELLQEEILDE  387 (492)
Q Consensus       359 ~pde~g~vvGIITlEDViEeLlgeeI~DE  387 (492)
                        |++|+++|+||..|+++.+.+ ++..+
T Consensus       109 --d~~g~~~Giit~~dil~~~~~-~~~~~  134 (138)
T 2yzi_A          109 --EEEGKIVGIFTLSDLLEASRR-RLETA  134 (138)
T ss_dssp             --EETTEEEEEEEHHHHHHHHHC-CSCCC
T ss_pred             --CCCCCEEEEEEHHHHHHHHHH-HHHhh
Confidence              678999999999999999986 65444

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.35  E-value=2.4e-12  Score=115.42  Aligned_cols=132  Identities=11%  Similarity=0.211  Sum_probs=93.3

Q ss_pred             cccccccccC----cceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhh
Q 011147          205 KTAKDAMTAM----SKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEK  280 (492)
Q Consensus       205 ~~V~diMtPr----~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~  280 (492)
                      ++|+|+|+|+    .++.+++.++++. ++++.+.+++++++||.+  .++++|+|+.+|+++.+.+...+        .
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~--------~   75 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVY-DAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERS--------S   75 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHH-HHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTCC--------S
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHH-HHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccCC--------c
Confidence            5799999988    7889999999998 999999999999999964  47899999965543322211100        0


Q ss_pred             ccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCC
Q 011147          281 SKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESL  359 (492)
Q Consensus       281 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~  359 (492)
                      .+.+++++             +.+.  ...++.+.                    ++.++++.|.+++.+ ++|+     
T Consensus        76 ~~~~v~~~-------------m~~~--~~~v~~~~--------------------~l~~~~~~m~~~~~~~lpVv-----  115 (157)
T 4fry_A           76 KATRVEEI-------------MTAK--VRYVEPSQ--------------------STDECMALMTEHRMRHLPVL-----  115 (157)
T ss_dssp             SSCBHHHH-------------SBSS--CCCBCTTS--------------------BHHHHHHHHHHHTCSEEEEE-----
T ss_pred             cccCHHHH-------------cCCC--CcEECCCC--------------------cHHHHHHHHHHcCCCEEEEE-----
Confidence            12223222             1111  11122222                    367889999999998 9999     


Q ss_pred             CCCCCcEEEEechhHHHHHHccCccCCcCcc
Q 011147          360 PSVDEEVIGIITLEDVMEELLQEEILDETDD  390 (492)
Q Consensus       360 pde~g~vvGIITlEDViEeLlgeeI~DEtD~  390 (492)
                       | +|+++|+||..|+++.+.+ +..++.++
T Consensus       116 -d-~g~~~Giit~~dil~~l~~-~~~~~~~~  143 (157)
T 4fry_A          116 -D-GGKLIGLISIGDLVKSVIA-DQQFTISQ  143 (157)
T ss_dssp             -E-TTEEEEEEEHHHHHHHHHT-TCCCCCC-
T ss_pred             -E-CCEEEEEEEHHHHHHHHHH-HHHhhHHH
Confidence             6 7999999999999999997 55554443

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.34  E-value=8.5e-12  Score=108.38  Aligned_cols=124  Identities=12%  Similarity=0.192  Sum_probs=91.2

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS  281 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~  281 (492)
                      |++.+|+++|++  ++.+++.++++. ++++.+.+++++++||++  .++++|+|+.+|+++.+.+...          .
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~~~----------~   65 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKGKS----------L   65 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTTCC----------T
T ss_pred             CCcccHHHhccC--CCEEECCCCcHH-HHHHHHHhcCCCEEEEEE--CCEEEEEEcHHHHHHHHhcCCC----------c
Confidence            467899999997  578899999998 999999999999999998  3789999996665433322110          1


Q ss_pred             cCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCC
Q 011147          282 KAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLP  360 (492)
Q Consensus       282 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~p  360 (492)
                      +.+++++             +.+.  ...++.+.                    ++.++++.|.+++.+ ++|+      
T Consensus        66 ~~~v~~~-------------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~l~Vv------  104 (133)
T 2ef7_A           66 ETKAEEF-------------MTAS--LITIREDS--------------------PITGALALMRQFNIRHLPVV------  104 (133)
T ss_dssp             TCBGGGT-------------SEEC--CCCEETTS--------------------BHHHHHHHHHHHTCSEEEEE------
T ss_pred             ccCHHHH-------------cCCC--CEEECCCC--------------------CHHHHHHHHHHcCCCEEEEE------
Confidence            2233333             1111  11123222                    367789999999998 9999      


Q ss_pred             CCCCcEEEEechhHHHHHHcc
Q 011147          361 SVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       361 de~g~vvGIITlEDViEeLlg  381 (492)
                      |++|+++|+||..|+++.+.+
T Consensus       105 d~~g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A          105 DDKGNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             CTTSCEEEEEEHHHHHHHHHH
T ss_pred             CCCCeEEEEEEHHHHHHHHHH
Confidence            788999999999999999865

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.33  E-value=2.2e-12  Score=113.99  Aligned_cols=132  Identities=14%  Similarity=0.183  Sum_probs=91.6

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchh---hH--H
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKE---IA--E  277 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~---~~--~  277 (492)
                      ...+|+|+|+|+.++++++.++++. ++++.+.+++++++||++++ ++++|+|+.+|++    +.+.....   ..  .
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~----~~~~~~~~~~~~~~~~   76 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVD-EALELLVENRITGFPVIDED-WKLVGLVSDYDLL----ALDSGDSTWKTFNAVQ   76 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHT----TCC----CCHHHHHHH
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHH-HHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHH----HhhcccCcccchHHHH
Confidence            4578999999988899999999998 99999999999999999753 7899999955432    21110000   00  0


Q ss_pred             ---hhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEE
Q 011147          278 ---MEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISK  353 (492)
Q Consensus       278 ---~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lV  353 (492)
                         ......++.++             +.+.  +..++.+.                    ++.++++.|.+.+.+ ++|
T Consensus        77 ~~~~~~~~~~v~~~-------------m~~~--~~~v~~~~--------------------~l~~a~~~~~~~~~~~l~V  121 (152)
T 4gqw_A           77 KLLSKTNGKLVGDL-------------MTPA--PLVVEEKT--------------------NLEDAAKILLETKYRRLPV  121 (152)
T ss_dssp             TC-----CCBHHHH-------------SEES--CCCEESSS--------------------BHHHHHHHHHHSSCCEEEE
T ss_pred             HHHHHhccccHHHh-------------cCCC--ceEECCCC--------------------cHHHHHHHHHHCCCCEEEE
Confidence               00001122222             1111  11123222                    367789999999998 999


Q ss_pred             ecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          354 EELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       354 v~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      +      |++|+++||||..|+++.+.+
T Consensus       122 v------d~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A          122 V------DSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             E------CTTSBEEEEEEHHHHHHHHHC
T ss_pred             E------CCCCcEEEEEEHHHHHHHHHh
Confidence            9      789999999999999999987

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.32  E-value=8.8e-12  Score=124.24  Aligned_cols=135  Identities=16%  Similarity=0.200  Sum_probs=104.4

Q ss_pred             CCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHc-----CCccceEEeCCCCceEEEEEccch
Q 011147          187 ELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISN-----GHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       187 ~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~-----~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      .++.+|+..+.+++.+.+.+|+++|++  ++++++.+.++. ++++.+.++     +++++||+++ .++++|+|+.+| 
T Consensus       119 ~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~pVvd~-~~~lvGivt~~d-  193 (286)
T 2oux_A          119 LLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVISLRD-  193 (286)
T ss_dssp             TSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEEHHH-
T ss_pred             cCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHH-HHHHHHHHcccCccceeEEEEEcC-CCeEEEEEEHHH-
Confidence            578889999999999999999999996  788999999998 999999987     8899999975 378999998333 


Q ss_pred             HHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHH
Q 011147          262 MAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCL  341 (492)
Q Consensus       262 m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l  341 (492)
                         +++..           .+.+++++             +.+.  +..++.+.                    ++.+++
T Consensus       194 ---ll~~~-----------~~~~v~~i-------------m~~~--~~~v~~~~--------------------~l~ea~  224 (286)
T 2oux_A          194 ---LIVND-----------DDTLIADI-------------LNER--VISVHVGD--------------------DQEDVA  224 (286)
T ss_dssp             ---HTTSC-----------TTSBHHHH-------------SBSC--CCCEETTS--------------------BHHHHH
T ss_pred             ---HHcCC-----------CCCcHHHH-------------cCCC--CeeecCCC--------------------CHHHHH
Confidence               22211           12233333             1111  11123332                    366789


Q ss_pred             HHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          342 KKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       342 ~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      +.|++++.+ ++|+      |++|+++||||..||++.+.+
T Consensus       225 ~~m~~~~~~~lpVV------d~~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          225 QTIRDYDFLAVPVT------DYDDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             HHHHHHTCSEEEEE------CTTCBEEEEEEHHHHHHHHHH
T ss_pred             HHHHHcCCcEEEEE------cCCCeEEEEEEHHHHHHHHHH
Confidence            999999999 9999      789999999999999999875

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.32  E-value=4.5e-12  Score=110.57  Aligned_cols=123  Identities=9%  Similarity=0.181  Sum_probs=89.0

Q ss_pred             ccccccccC-cceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          206 TAKDAMTAM-SKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       206 ~V~diMtPr-~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      +|+|+|+|+ .++.+++.++++. ++++.+.+++++++||++  .++++|+|+.+|+    ++.+...+..    ..+.+
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl----~~~~~~~~~~----~~~~~   75 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMK--DEKLVGILTERDF----SRKSYLLDKP----VKDTQ   75 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHH----HHHGGGSSSC----GGGSB
T ss_pred             eHHHHHhcCCCCcEEECCCCcHH-HHHHHHHhcCCCEEEEEE--CCEEEEEEehHHH----HHHHHHcCCC----cccCC
Confidence            899999987 7889999999998 999999999999999997  3789999996554    3222111000    01223


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      +.++             +.+.  +..++.+.                    ++.++++.|.+.+.+ ++|+      | +
T Consensus        76 v~~~-------------m~~~--~~~v~~~~--------------------~l~~~~~~m~~~~~~~lpVv------d-~  113 (135)
T 2rc3_A           76 VKEI-------------MTRQ--VAYVDLNN--------------------TNEDCMALITEMRVRHLPVL------D-D  113 (135)
T ss_dssp             GGGT-------------SBCS--CCCBCTTC--------------------BHHHHHHHHHHHTCSEEEEE------E-T
T ss_pred             HHHh-------------ccCC--CeEECCCC--------------------cHHHHHHHHHHhCCCEEEEE------e-C
Confidence            3333             1111  11122222                    367889999999988 9999      6 7


Q ss_pred             CcEEEEechhHHHHHHcc
Q 011147          364 EEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       364 g~vvGIITlEDViEeLlg  381 (492)
                      |+++|+||..|+++.+.+
T Consensus       114 g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A          114 GKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             TEEEEEEEHHHHHHHHHC
T ss_pred             CEEEEEEEHHHHHHHHHh
Confidence            999999999999999987

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.32  E-value=7.9e-12  Score=106.77  Aligned_cols=119  Identities=14%  Similarity=0.178  Sum_probs=87.5

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      .+|+|+|++  ++.+++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+++.+.+.             ..+
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~-------------~~~   63 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIM-EAAKILIKHNINHLPIVDE-HGKLVGIITSWDIAKALAQN-------------KKT   63 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHH-HHHHHHHHHTCSCEEEECT-TSBEEEEECHHHHHHHHHTT-------------CCB
T ss_pred             CchHHhhCC--CCEEeCCCCcHH-HHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHHHHHHhc-------------ccC
Confidence            468999997  678899999998 9999999999999999974 47899999855543332211             113


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      +.++             +.+.  +..++.+.                    ++.++++.|.+.+.+ ++|+      |++
T Consensus        64 v~~~-------------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~l~Vv------d~~  102 (122)
T 3kpb_A           64 IEEI-------------MTRN--VITAHEDE--------------------PVDHVAIKMSKYNISGVPVV------DDY  102 (122)
T ss_dssp             GGGT-------------SBSS--CCCEETTS--------------------BHHHHHHHHHHHTCSEEEEE------CTT
T ss_pred             HHHH-------------hcCC--CeEECCCC--------------------CHHHHHHHHHHhCCCeEEEE------CCC
Confidence            3333             1111  11123222                    367789999999988 9999      788


Q ss_pred             CcEEEEechhHHHHHHcc
Q 011147          364 EEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       364 g~vvGIITlEDViEeLlg  381 (492)
                      |+++|+||..|+++.+.+
T Consensus       103 g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A          103 RRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             CBEEEEEEHHHHHHHHC-
T ss_pred             CCEEEEEeHHHHHHHhhc
Confidence            999999999999999876

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.31  E-value=7.1e-12  Score=110.31  Aligned_cols=122  Identities=11%  Similarity=0.172  Sum_probs=89.1

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCC-CCceEEEEEccchHHHHHHhhccchhhHHhhhccC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGT-PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKA  283 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~-~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~  283 (492)
                      .+|+|+|++  ++.+++.++++. ++++.+.+++++++||++++ .++++|+|+.+|+++.+.+...          .+.
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~----------~~~   71 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD----------LDG   71 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC----------TTS
T ss_pred             eEHHHHhcC--CCeEeCCCCcHH-HHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCC----------CCC
Confidence            689999996  788999999998 99999999999999999863 1289999996665443332210          122


Q ss_pred             CCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCC
Q 011147          284 PMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSV  362 (492)
Q Consensus       284 ~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde  362 (492)
                      ++.++             +.+.  +..++.+ +                    +.++++.|.+.+.+ ++|+      |+
T Consensus        72 ~v~~~-------------m~~~--~~~v~~~-~--------------------l~~a~~~m~~~~~~~l~Vv------d~  109 (141)
T 2rih_A           72 PAMPI-------------ANSP--ITVLDTD-P--------------------VHVAAEKMRRHNIRHVVVV------NK  109 (141)
T ss_dssp             BSGGG-------------CBCC--CEEETTS-B--------------------HHHHHHHHHHHTCSEEEEE------CT
T ss_pred             CHHHH-------------cCCC--CeEEcCC-C--------------------HHHHHHHHHHcCCeEEEEE------cC
Confidence            33333             1111  1112332 2                    66789999999998 9999      78


Q ss_pred             CCcEEEEechhHHHHHHcc
Q 011147          363 DEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       363 ~g~vvGIITlEDViEeLlg  381 (492)
                      +|+++|+||.+|+++++.+
T Consensus       110 ~g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A          110 NGELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             TSCEEEEEEHHHHHSCHHH
T ss_pred             CCcEEEEEEHHHHHHHHHH
Confidence            8999999999999887754

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.29  E-value=7.1e-12  Score=112.71  Aligned_cols=139  Identities=13%  Similarity=0.155  Sum_probs=92.9

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhh
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEK  280 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~  280 (492)
                      .+.+.+|+++|+|+.++.+++.++++. ++++.+.+++++++||++++ ++++|+|+.+|++    +.+...........
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~----~~~~~~~~~~~~~~   83 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIM----NSIFGLERIEFEKL   83 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHH----HHHBCSSSBCGGGT
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHH----HHhhhhcccchhhh
Confidence            577899999999888899999999998 99999999999999999753 6899999966543    33221000000000


Q ss_pred             ccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcceEEecccCCC
Q 011147          281 SKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLP  360 (492)
Q Consensus       281 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~~lVv~~~~~p  360 (492)
                      ...++.++             +.+.  +..+..+                    .++.++++.|.+.+. ++|+      
T Consensus        84 ~~~~v~~~-------------m~~~--~~~v~~~--------------------~~l~~a~~~m~~~~~-lpVv------  121 (159)
T 1yav_A           84 DQITVEEV-------------MLTD--IPRLHIN--------------------DPIMKGFGMVINNGF-VCVE------  121 (159)
T ss_dssp             TTSBHHHH-------------SBCS--CCEEETT--------------------SBHHHHHHHTTTCSE-EEEE------
T ss_pred             ccCCHHHh-------------cCCC--CceEcCC--------------------CCHHHHHHHHHhCCE-EEEE------
Confidence            11122222             1111  1112222                    236778999988765 8898      


Q ss_pred             CCCCcEEEEechhHHHHHHccCccCCcC
Q 011147          361 SVDEEVIGIITLEDVMEELLQEEILDET  388 (492)
Q Consensus       361 de~g~vvGIITlEDViEeLlgeeI~DEt  388 (492)
                      |++|+++|+||..|+++.+.+ ++.++.
T Consensus       122 d~~g~~vGiit~~dil~~~~~-~~~~~~  148 (159)
T 1yav_A          122 NDEQVFEGIFTRRVVLKELNK-HIRSLN  148 (159)
T ss_dssp             CTTCBEEEEEEHHHHHHHHHH-HC----
T ss_pred             eCCCeEEEEEEHHHHHHHHHH-HHHhhc
Confidence            778999999999999999986 554443

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.29  E-value=1.4e-11  Score=111.10  Aligned_cols=127  Identities=9%  Similarity=0.094  Sum_probs=90.3

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS  281 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~  281 (492)
                      |.+.+|+|+|++  . ++++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+++.++....         ..
T Consensus        14 l~~~~v~~im~~--~-~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~---------~~   79 (159)
T 3fv6_A           14 LKKLQVKDFQSI--P-VVIHENVSVY-DAICTMFLEDVGTLFVVDR-DAVLVGVLSRKDLLRASIGQQE---------LT   79 (159)
T ss_dssp             HTTCBGGGSCBC--C-CEEETTSBHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHTSCSC---------TT
T ss_pred             HhhCCHHHHcCC--C-EEECCCCcHH-HHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHhhccCc---------cc
Confidence            567899999985  3 4899999998 9999999999999999974 3789999996665443322110         11


Q ss_pred             cCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCC
Q 011147          282 KAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLP  360 (492)
Q Consensus       282 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~p  360 (492)
                      +.+++++             +.+......+..+                    .++.++++.|.+.+.+ ++|+      
T Consensus        80 ~~~v~~~-------------m~~~~~~~~v~~~--------------------~~l~~a~~~m~~~~~~~lpVv------  120 (159)
T 3fv6_A           80 SVPVHII-------------MTRMPNITVCRRE--------------------DYVMDIAKHLIEKQIDALPVI------  120 (159)
T ss_dssp             TCBGGGT-------------SEETTSCCCBCTT--------------------SBHHHHHHHHHHHTCSEEEEE------
T ss_pred             CcCHHHH-------------HcCCCCcEEECCC--------------------CCHHHHHHHHHHcCCcEEEEE------
Confidence            2334433             1110011112222                    2367789999999999 9999      


Q ss_pred             CCCC---cEEEEechhHHHHHHcc
Q 011147          361 SVDE---EVIGIITLEDVMEELLQ  381 (492)
Q Consensus       361 de~g---~vvGIITlEDViEeLlg  381 (492)
                      |++|   +++||||..||++.+..
T Consensus       121 d~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A          121 KDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             EECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             eCCCcceeEEEEEEHHHHHHHHHH
Confidence            6777   99999999999999863

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.27  E-value=4.2e-12  Score=113.12  Aligned_cols=120  Identities=13%  Similarity=0.153  Sum_probs=86.1

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      .+|+|+|+|+.++.+++.++++. ++++.+.+++++++||++++ ++++|+|+.+|+++.+.+...         ..+.+
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~---------~~~~~   96 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLR-DALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVD---------MRDAS   96 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHH-HHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSC---------CTTCB
T ss_pred             cCHHHHhcCCCCCeEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCC---------cccCc
Confidence            58999999988899999999998 99999999999999999743 789999996655433321110         01222


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      ++++             +.+.  +..++.+.                    ++.++++.|.+++.+ ++|+      |++
T Consensus        97 v~~~-------------m~~~--~~~v~~~~--------------------~l~~a~~~m~~~~~~~lpVv------d~~  135 (149)
T 3k2v_A           97 IADV-------------MTRG--GIRIRPGT--------------------LAVDALNLMQSRHITCVLVA------DGD  135 (149)
T ss_dssp             HHHH-------------SEES--CCEECTTC--------------------BHHHHHHHHHHHTCSEEEEE------ETT
T ss_pred             HHHH-------------cCCC--CeEECCCC--------------------CHHHHHHHHHHcCCCEEEEe------cCC
Confidence            3222             1111  11122222                    367789999999998 9999      544


Q ss_pred             CcEEEEechhHHHH
Q 011147          364 EEVIGIITLEDVME  377 (492)
Q Consensus       364 g~vvGIITlEDViE  377 (492)
                       +++||||..||++
T Consensus       136 -~~~Giit~~dil~  148 (149)
T 3k2v_A          136 -HLLGVVHMHDLLR  148 (149)
T ss_dssp             -EEEEEEEHHHHTC
T ss_pred             -EEEEEEEHHHhhc
Confidence             9999999999974

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.27  E-value=6.7e-12  Score=114.35  Aligned_cols=135  Identities=13%  Similarity=0.188  Sum_probs=90.4

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhcc---chhhHH---
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKND---SKEIAE---  277 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~---~~~~~~---  277 (492)
                      ..+|+|+|+|+.++++++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+++.....-..   ....+.   
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~   80 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVD-DALELLVEKKVTGLPVIDD-NWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS   80 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHH-HHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHTCC-------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHH-HHHHHHHHcCCCeEEEECC-CCeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence            368999999988899999999998 9999999999999999975 37899999965543211000000   000000   


Q ss_pred             ------------hhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHh
Q 011147          278 ------------MEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWE  345 (492)
Q Consensus       278 ------------~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~  345 (492)
                                  ....+.+++++             +.+.  +..++.+                    .++.++++.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~~-------------m~~~--~~~v~~~--------------------~~l~~a~~~m~  125 (180)
T 3sl7_A           81 TWKTFNELQKLISKTYGKVVGDL-------------MTPS--PLVVRDS--------------------TNLEDAARLLL  125 (180)
T ss_dssp             CCCSHHHHHHHHHTTTTCBHHHH-------------SEES--CCCEETT--------------------SBHHHHHHHHT
T ss_pred             hhhhhHHHHHHHhccccccHHHH-------------hCCC--ceEeCCC--------------------CcHHHHHHHHH
Confidence                        00001111111             1111  1112222                    23678899999


Q ss_pred             HcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          346 RQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       346 ~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      +.+.+ ++|+      |++|+++||||..||++.+.+
T Consensus       126 ~~~~~~lpVv------d~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A          126 ETKFRRLPVV------DADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             TSTTCEEEEE------CTTCBEEEEEEHHHHHHHHHH
T ss_pred             HcCCCEEEEE------CCCCeEEEEEEHHHHHHHHHH
Confidence            99998 9999      789999999999999999975

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.26  E-value=1.1e-11  Score=108.06  Aligned_cols=126  Identities=12%  Similarity=0.212  Sum_probs=89.0

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS  281 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~  281 (492)
                      |.+.+|+++|++  ++.+++.++++. ++++.+.+++++++||++++ ++++|+|+.+|+.   .+.+....      ..
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~---~~~~~~~~------~~   71 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVV-EAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIG---YNLIRDKY------TL   71 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHH-HHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHH---HHHTTTCC------CS
T ss_pred             cccCCHHHhhcC--CceEECCCCcHH-HHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHH---HHHHhhcc------cC
Confidence            568899999986  677899999998 99999999999999999753 7899999955530   22221100      01


Q ss_pred             cCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcC-----cc-eEEec
Q 011147          282 KAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQD-----VK-ISKEE  355 (492)
Q Consensus       282 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~-----~~-~lVv~  355 (492)
                      +.+++++             +.+.  +..++.+.                    ++.++++.|.+.+     .+ ++|+ 
T Consensus        72 ~~~v~~~-------------m~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~~~~~~l~Vv-  115 (138)
T 2p9m_A           72 ETTIGDV-------------MTKD--VITIHEDA--------------------SILEAIKKMDISGKKEEIINQLPVV-  115 (138)
T ss_dssp             SCBHHHH-------------SCSS--CCCEETTS--------------------BHHHHHHHHTCC-----CCCEEEEE-
T ss_pred             CcCHHHH-------------hCCC--cEEECCCC--------------------CHHHHHHHHHhcCCccccccEEEEE-
Confidence            1222222             1111  11123222                    3677899999998     88 9999 


Q ss_pred             ccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          356 LESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       356 ~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                           |++|+++|+||..|+++.+.+
T Consensus       116 -----d~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A          116 -----DKNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             -----CTTSBEEEEEEHHHHHHHHHH
T ss_pred             -----CCCCeEEEEEEHHHHHHHHHh
Confidence                 778999999999999999875

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.26  E-value=3.2e-11  Score=104.51  Aligned_cols=123  Identities=10%  Similarity=0.123  Sum_probs=88.6

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhcc
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSK  282 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~  282 (492)
                      .+.+|+++|++  ++.+++.++++. ++++.+.+++++.+||+++  ++++|+|+.+|    +.+.+.+..      ...
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~d----l~~~~~~~~------~~~   67 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTA-DAARRLAASGCACAPVLDG--ERYLGMVHLSR----LLEGRKGWP------TVK   67 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHH----HHTTCSSSC------CTT
T ss_pred             cceEHHHhhcC--CcceECCCCCHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHH----HHHHHhhCC------ccc
Confidence            46789999986  567799999998 9999999999999999986  89999998444    344332210      001


Q ss_pred             CCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCC
Q 011147          283 APMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPS  361 (492)
Q Consensus       283 ~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pd  361 (492)
                      .+++++             +.+.  ...++.+.+                    +.++++.|.+++.+ ++|+      |
T Consensus        68 ~~v~~~-------------m~~~--~~~v~~~~~--------------------l~~~~~~~~~~~~~~lpVv------d  106 (128)
T 3gby_A           68 EKLGEE-------------LLET--VRSYRPGEQ--------------------LFDNLISVAAAKCSVVPLA------D  106 (128)
T ss_dssp             CBCCGG-------------GCBC--CCCBCTTSB--------------------GGGSHHHHHHCSSSEEEEE------C
T ss_pred             CcHHHH-------------ccCC--CcEECCCCC--------------------HHHHHHHHHhCCCcEEEEE------C
Confidence            233333             1111  111233322                    44568999999999 9999      7


Q ss_pred             CCCcEEEEechhHHHHHHcc
Q 011147          362 VDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       362 e~g~vvGIITlEDViEeLlg  381 (492)
                      ++|+++|+||..|+++.+-.
T Consensus       107 ~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A          107 EDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             TTCBEEEEEEHHHHHHHHHT
T ss_pred             CCCCEEEEEEHHHHHHHHHh
Confidence            89999999999999998853

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.24  E-value=3.3e-11  Score=108.22  Aligned_cols=133  Identities=13%  Similarity=0.119  Sum_probs=92.2

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCcc-ceEEeCCCCceEEEEEccchHHHHHHh----hccchhhH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSR-VPIYVGTPTNIIGAILGHSHMAVVVKC----KNDSKEIA  276 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SR-iPV~~~~~d~IvGiv~~~d~m~~vvk~----l~~~~~~~  276 (492)
                      +...+|+++|++  ++.+++.++++. ++++.+.++++++ +||++++  +++|+|+.+|+++.+...    +.......
T Consensus        13 ~~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~~   87 (157)
T 1o50_A           13 MKVKDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELIR   87 (157)
T ss_dssp             CBHHHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC------
T ss_pred             hccccHhhcccC--CCceECCCCCHH-HHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHHH
Confidence            677899999986  789999999998 9999999999999 9999864  899999977665443311    00000000


Q ss_pred             H--hhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEE
Q 011147          277 E--MEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISK  353 (492)
Q Consensus       277 ~--~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lV  353 (492)
                      .  ......++              ..++..  +..++.+.                    ++.++++.|.+.+.+ ++|
T Consensus        88 ~~~~~~~~~~v--------------~~im~~--~~~v~~~~--------------------~l~~a~~~m~~~~~~~lpV  131 (157)
T 1o50_A           88 SSMKRLIAKNA--------------SEIMLD--PVYVHMDT--------------------PLEEALKLMIDNNIQEMPV  131 (157)
T ss_dssp             -CCCCCSSCBH--------------HHHCBC--CCCBCTTS--------------------BHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHcCCcH--------------HHHcCC--CeEECCCC--------------------CHHHHHHHHHHCCCcEEEE
Confidence            0  00001111              112211  11123222                    367889999999998 999


Q ss_pred             ecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          354 EELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       354 v~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      +      |++|+++|+||..|+++.+.+
T Consensus       132 v------d~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A          132 V------DEKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             E------CTTSCEEEEEEHHHHHHHHHH
T ss_pred             E------cCCCEEEEEEEHHHHHHHHHH
Confidence            9      778999999999999999976

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.24  E-value=3e-11  Score=103.38  Aligned_cols=121  Identities=12%  Similarity=0.222  Sum_probs=86.9

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      .+|+|+|++  ++.+++.++++. ++++.+.+++++++||++  .++++|+|+.+|+++.+.+...         ..+.+
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd--~~~~~G~it~~dl~~~~~~~~~---------~~~~~   66 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGDD---------LAEVK   66 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHTCC---------TTTSB
T ss_pred             CCHHHhcCC--CceEECCCCcHH-HHHHHHHHcCCCEEEEEe--CCeeEEEEeHHHHHHHHhcCCc---------ccccC
Confidence            368999986  778899999998 999999999999999998  3789999997665443332211         01122


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      +.++             +.+.  ...++.+.                    ++.++++.|.+.+.+ ++|+      |+ 
T Consensus        67 v~~~-------------m~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~l~Vv------d~-  104 (125)
T 1pbj_A           67 VWEV-------------MERD--LVTISPRA--------------------TIKEAAEKMVKNVVWRLLVE------ED-  104 (125)
T ss_dssp             HHHH-------------CBCG--GGEECTTS--------------------CHHHHHHHHHHHTCSEEEEE------ET-
T ss_pred             HHHH-------------cCCC--CeEECCCC--------------------CHHHHHHHHHhcCCcEEEEE------EC-
Confidence            3222             1111  11123332                    366789999999988 9998      56 


Q ss_pred             CcEEEEechhHHHHHHcc
Q 011147          364 EEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       364 g~vvGIITlEDViEeLlg  381 (492)
                      |+++|+||..|+++.+.+
T Consensus       105 ~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A          105 DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             TEEEEEEEHHHHHHHHC-
T ss_pred             CEEEEEEEHHHHHHHHHh
Confidence            999999999999999986

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.23  E-value=2.2e-11  Score=111.60  Aligned_cols=150  Identities=11%  Similarity=0.182  Sum_probs=91.9

Q ss_pred             ccccccccccccCcc--eEEE--eCCCChHHHHHHHHHHcCCccceEEe-CCCCceEEEEEccchHHHHHHhhccchhhH
Q 011147          202 MTQKTAKDAMTAMSK--IFSL--DINSRLDEKTMGLIISNGHSRVPIYV-GTPTNIIGAILGHSHMAVVVKCKNDSKEIA  276 (492)
Q Consensus       202 l~~~~V~diMtPr~~--v~~l--~~~~tl~~e~~~~i~~~~~SRiPV~~-~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~  276 (492)
                      +.+.+|+|+|+|..+  ++++  +.++++. ++++.+.+++++++||++ ++.++++|+|+.+|+++.+...........
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~-~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHH-HHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            467899999998754  6777  9999998 999999999999999994 345789999997766554433210000000


Q ss_pred             Hhhh--ccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEE
Q 011147          277 EMEK--SKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISK  353 (492)
Q Consensus       277 ~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lV  353 (492)
                      ....  ......+. ............++.. .+..++.+                    .++.++++.|.+.+.+ ++|
T Consensus        87 ~~~~~~~~~~~~~~-~~~~~~~~~v~~im~~-~~~~v~~~--------------------~~l~~a~~~m~~~~~~~l~V  144 (185)
T 2j9l_A           87 STSIIYFTEHSPPL-PPYTPPTLKLRNILDL-SPFTVTDL--------------------TPMEIVVDIFRKLGLRQCLV  144 (185)
T ss_dssp             TTCEEECSSSCCCC-CTTCCCCEECGGGEES-SCCEEETT--------------------SBHHHHHHHHHHHTCSEEEE
T ss_pred             ccceeecccCCccc-ccccccCccHHHhhCc-CCeEeCCC--------------------CCHHHHHHHHHhCCCcEEEE
Confidence            0000  00000000 0000000011111100 11112222                    2367889999999998 988


Q ss_pred             ecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          354 EELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       354 v~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      +      | +|+++||||..||++.+.+
T Consensus       145 v------d-~g~~vGiit~~dll~~l~~  165 (185)
T 2j9l_A          145 T------H-NGRLLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             E------E-TTEEEEEEEHHHHHHHHHH
T ss_pred             E------E-CCEEEEEEEHHHHHHHHHH
Confidence            8      5 8999999999999999976

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.22  E-value=3e-11  Score=105.78  Aligned_cols=130  Identities=12%  Similarity=0.116  Sum_probs=91.0

Q ss_pred             ccccccccc---ccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHH
Q 011147          201 DMTQKTAKD---AMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAE  277 (492)
Q Consensus       201 ~l~~~~V~d---iMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~  277 (492)
                      ++-++++++   +|+  .++++++.++++. ++++.+.+++++++||++++ ++++|+|+.+|+++.+.+...    .  
T Consensus         4 ~~~~~~v~~~~~~~~--~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~----~--   73 (144)
T 2nyc_A            4 HFLKIPIGDLNIITQ--DNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIY----N--   73 (144)
T ss_dssp             GGGGSBGGGSSCCBC--SSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC---------
T ss_pred             chhhcchhhcCCCCC--CCceEECCCCcHH-HHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhccccc----c--
Confidence            355678888   776  4788899999998 99999999999999999753 789999997665443322110    0  


Q ss_pred             hhhccCCCcccccccchhhhhhccccccc----cccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eE
Q 011147          278 MEKSKAPMQHDININSNLKQRQGELKGNV----QNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-IS  352 (492)
Q Consensus       278 ~~~~~~~v~~v~~~~~~~~~~~~~~~~~~----~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~l  352 (492)
                        ..+.++.++             +.+..    ....++.+.                    ++.++++.|.+.+.+ ++
T Consensus        74 --~~~~~v~~~-------------m~~~~~~~~~~~~v~~~~--------------------~l~~~~~~m~~~~~~~l~  118 (144)
T 2nyc_A           74 --DLSLSVGEA-------------LMRRSDDFEGVYTCTKND--------------------KLSTIMDNIRKARVHRFF  118 (144)
T ss_dssp             ---CCSBHHHH-------------HHHCC------CEECTTS--------------------BHHHHHHHHHHHTCSEEE
T ss_pred             --cCCccHHHH-------------HhcCccccCCCeEECCCC--------------------cHHHHHHHHHHCCCCEEE
Confidence              011222222             11100    111123322                    367789999999998 99


Q ss_pred             EecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          353 KEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       353 Vv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      |+      |++|+++|+||..|+++.+.+
T Consensus       119 Vv------d~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A          119 VV------DDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             EE------CTTSBEEEEEEHHHHHHHHHH
T ss_pred             EE------CCCCCEEEEEEHHHHHHHHHh
Confidence            99      788999999999999999975

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.21  E-value=3e-11  Score=108.31  Aligned_cols=139  Identities=10%  Similarity=0.169  Sum_probs=91.2

Q ss_pred             HHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeC-CCCceEEEEEccchHHHHHHhhccch
Q 011147          195 IITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVG-TPTNIIGAILGHSHMAVVVKCKNDSK  273 (492)
Q Consensus       195 iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~-~~d~IvGiv~~~d~m~~vvk~l~~~~  273 (492)
                      +..+.+.+.+.+|+|+|++  ++++++.++++. ++++.+.+++++++||+++ +.++++|+|+.+|+++.+.+..... 
T Consensus         3 l~~~~~~~~~~~v~dim~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~-   78 (164)
T 2pfi_A            3 ILGRNIGSHHVRVEHFMNH--SITTLAKDTPLE-EVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSR-   78 (164)
T ss_dssp             -------CCSCBHHHHCBC--CCCCEETTCBHH-HHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC------
T ss_pred             CccccccccCCCHHHHcCC--CCeEECCCCcHH-HHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhcccc-
Confidence            3445667889999999997  678899999998 9999999999999999975 3578999999666544332211100 


Q ss_pred             hhHHhhhccCCCcccccccchhhhhhccccccc--c--ccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCc
Q 011147          274 EIAEMEKSKAPMQHDININSNLKQRQGELKGNV--Q--NEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDV  349 (492)
Q Consensus       274 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~--~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~  349 (492)
                       ..   ....++.++             +.+..  .  +..++.+                    .++.++++.|.+.+.
T Consensus        79 -~~---~~~~~v~~~-------------m~~~~~~~~~~~~v~~~--------------------~~l~~~~~~m~~~~~  121 (164)
T 2pfi_A           79 -AP---GHQQCLQDI-------------LARGCPTEPVTLTLFSE--------------------TTLHQAQNLFKLLNL  121 (164)
T ss_dssp             ------CCCCBHHHH-------------HHTTCCCBCCCCCEETT--------------------CBHHHHHHHHHHTTC
T ss_pred             -CC---cccchhhhh-------------hcccccccCCceEECCC--------------------CcHHHHHHHHHHhCC
Confidence             00   001122222             11000  0  1111222                    236788999999999


Q ss_pred             c-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          350 K-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       350 ~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      + ++|+      | +|+++||||..|+++.+.+
T Consensus       122 ~~lpVv------d-~g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A          122 QSLFVT------S-RGRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             SEEEEE------E-TTEEEEEEEHHHHHHHHHH
T ss_pred             CEEEEE------E-CCEEEEEEEHHHHHHHHHh
Confidence            8 9999      5 7999999999999999875

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.20  E-value=4e-11  Score=110.75  Aligned_cols=124  Identities=13%  Similarity=0.143  Sum_probs=89.0

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      .+|+|+|++  ++++++.++++. ++++.+.+++++++||++++ ++++|+|+.+|++    +.+......    ..+.+
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~-ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~----~~~~~~~~~----~~~~~   76 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSII----KRFIPRNKK----PDEVP   76 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHH----HHTGGGCCC----GGGSB
T ss_pred             cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHH----HHHhhcccC----cccCC
Confidence            689999985  788899999998 99999999999999999753 7899999965543    332210000    01223


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      ++++             +.+.  ...++.+.                    ++.++++.|.+.+.+ ++|+      |++
T Consensus        77 v~~i-------------m~~~--~~~v~~~~--------------------~l~~a~~~m~~~~~~~lpVv------d~~  115 (184)
T 1pvm_A           77 IRLV-------------MRKP--IPKVKSDY--------------------DVKDVAAYLSENGLERCAVV------DDP  115 (184)
T ss_dssp             GGGT-------------SBSS--CCEEETTC--------------------BHHHHHHHHHHHTCSEEEEE------CTT
T ss_pred             HHHH-------------hCCC--CcEECCCC--------------------CHHHHHHHHHHcCCcEEEEE------cCC
Confidence            3333             1111  11123332                    367789999999998 9999      788


Q ss_pred             CcEEEEechhHHHHHHcc
Q 011147          364 EEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       364 g~vvGIITlEDViEeLlg  381 (492)
                      |+++|+||.+|+++.+.+
T Consensus       116 g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A          116 GRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             CCEEEEEEHHHHTTTSCH
T ss_pred             CeEEEEEEHHHHHHHHHh
Confidence            999999999999988765

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.19  E-value=3.4e-11  Score=116.95  Aligned_cols=154  Identities=12%  Similarity=0.186  Sum_probs=104.0

Q ss_pred             ccCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceE
Q 011147          165 LLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPI  244 (492)
Q Consensus       165 ~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV  244 (492)
                      .+|.+||..++..    +...+.+.   .....+++...+.+|+++|++  ++++++.++++. ++++.+.+++++++||
T Consensus        51 ivt~~di~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~V  120 (280)
T 3kh5_A           51 IITSMDIVDFMGG----GSKYNLIR---EKHERNFLAAINEPVREIMEE--NVITLKENADID-EAIETFLTKNVGGAPI  120 (280)
T ss_dssp             EEEHHHHHHHTTT----SGGGHHHH---TTSTTCHHHHTTSBGGGTSBC--SCCCEETTCBHH-HHHHHHHHTTCSEEEE
T ss_pred             EEEHHHHHHHhcc----cchhhhhh---hccccchhHHhhhhHHHhcCC--CCEEECCCCCHH-HHHHHHHhCCCCEEEE
Confidence            5788888887642    11111111   111333444457899999997  778899999998 9999999999999999


Q ss_pred             EeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccch
Q 011147          245 YVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSD  324 (492)
Q Consensus       245 ~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~  324 (492)
                      +++ .++++|+++.+|+++.+.+...          ...+++++             +.+.  ...++.+.         
T Consensus       121 vd~-~~~~~Givt~~dl~~~~~~~~~----------~~~~v~~~-------------m~~~--~~~v~~~~---------  165 (280)
T 3kh5_A          121 VND-ENQLISLITERDVIRALLDKID----------ENEVIDDY-------------ITRD--VIVATPGE---------  165 (280)
T ss_dssp             ECT-TCBEEEEEEHHHHHHHHGGGSC----------TTCBSGGG-------------CBCS--CCCBCTTC---------
T ss_pred             EcC-CCEEEEEEEHHHHHHHHhhcCC----------CCCCHHHH-------------hCCC--CeEECCCC---------
Confidence            975 4789999996665433322211          11233333             1111  11123332         


Q ss_pred             hhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          325 IDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       325 l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                                 ++.++++.|++.+.+ ++|+       ++|+++|+||.+|+++.+..
T Consensus       166 -----------~l~~~~~~~~~~~~~~~~Vv-------~~~~~~Givt~~dl~~~~~~  205 (280)
T 3kh5_A          166 -----------RLKDVARTMVRNGFRRLPVV-------SEGRLVGIITSTDFIKLLGS  205 (280)
T ss_dssp             -----------BHHHHHHHHHHHTCSEEEEE-------ETTEEEEEEEHHHHHHHHTS
T ss_pred             -----------cHHHHHHHHHHcCCCEEEEE-------ECCEEEEEEEHHHHHHHHhh
Confidence                       366789999999999 8888       57999999999999999864

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.16  E-value=2.2e-11  Score=105.68  Aligned_cols=126  Identities=17%  Similarity=0.199  Sum_probs=85.6

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS  281 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~  281 (492)
                      ++-.+|+|+|++  ++.+++.++++. ++++.+.+++++++||++++ ++++|+|+.+|++.   +.+... ..    ..
T Consensus         5 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~---~~~~~~-~~----~~   72 (133)
T 1y5h_A            5 FTMTTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVI---KGLAAG-LD----PN   72 (133)
T ss_dssp             ---CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHH---TTGGGT-CC----TT
T ss_pred             hhhcCHHHHhcC--CceEeCCCCCHH-HHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHH---HHHhcC-CC----cc
Confidence            445789999986  678899999998 99999999999999999643 78999998554321   122110 00    00


Q ss_pred             cCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCC
Q 011147          282 KAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLP  360 (492)
Q Consensus       282 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~p  360 (492)
                      +.+++++             +.+.  +..++.+.                    ++.++++.|.+.+.+ ++|+      
T Consensus        73 ~~~v~~~-------------m~~~--~~~v~~~~--------------------~l~~~~~~m~~~~~~~l~Vv------  111 (133)
T 1y5h_A           73 TATAGEL-------------ARDS--IYYVDANA--------------------SIQEMLNVMEEHQVRRVPVI------  111 (133)
T ss_dssp             TSBHHHH-------------HTTC--CCCEETTC--------------------CHHHHHHHHHHHTCSEEEEE------
T ss_pred             ccCHHHH-------------hcCC--CEEECCCC--------------------CHHHHHHHHHHcCCCEEEEE------
Confidence            1222222             1111  11122222                    367789999999998 9999      


Q ss_pred             CCCCcEEEEechhHHHHHHcc
Q 011147          361 SVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       361 de~g~vvGIITlEDViEeLlg  381 (492)
                      |+ |+++|+||..|+++.+.+
T Consensus       112 d~-g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A          112 SE-HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             ET-TEEEEEEEHHHHHHTCC-
T ss_pred             EC-CEEEEEEEHHHHHHHHHh
Confidence            55 899999999999999876

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.15  E-value=1.2e-10  Score=105.13  Aligned_cols=132  Identities=14%  Similarity=0.159  Sum_probs=90.0

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhcc
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSK  282 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~  282 (492)
                      ...+|+|+|++  ++++++.++++. ++++.+.+++++++||+++ .++++|+|..+|+++.+........ .......+
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~~~~~-~~~~~~~~   77 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRSA-QGDSLAFE   77 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC----------CC
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHhhcccc-cccchhcc
Confidence            45789999986  678899999998 9999999999999999975 3789999997776555443221000 00000011


Q ss_pred             CCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCC
Q 011147          283 APMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPS  361 (492)
Q Consensus       283 ~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pd  361 (492)
                      .+++++             +.+.  +..++.+.                    ++.++++.|.+.+.+ ++|+      |
T Consensus        78 ~~v~~i-------------m~~~--~~~v~~~~--------------------~l~~a~~~m~~~~~~~lpVv------d  116 (160)
T 2o16_A           78 TPLFEV-------------MHTD--VTSVAPQA--------------------GLKESAIYMQKHKIGCLPVV------A  116 (160)
T ss_dssp             CBHHHH-------------SCSC--EEEBCTTS--------------------BHHHHHHHHHHTTCSCEEEE------E
T ss_pred             cCHHHH-------------hcCC--CeEECCCC--------------------CHHHHHHHHHHhCCCEEEEE------E
Confidence            222222             1111  11123332                    367789999999988 9999      5


Q ss_pred             CCCcEEEEechhHHHHHHcc
Q 011147          362 VDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       362 e~g~vvGIITlEDViEeLlg  381 (492)
                      + |+++||||..||++.+.+
T Consensus       117 ~-g~lvGiit~~dil~~~~~  135 (160)
T 2o16_A          117 K-DVLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             T-TEEEEEECHHHHHHHHHH
T ss_pred             C-CEEEEEEEHHHHHHHHHH
Confidence            5 999999999999998754

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.15  E-value=1.2e-10  Score=124.51  Aligned_cols=151  Identities=13%  Similarity=0.177  Sum_probs=110.8

Q ss_pred             ccCHHHHHHHHHhhccccCCCCCCC-----hhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCC
Q 011147          165 LLRRAELKTLVDMHGNEAGKGGELT-----HDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGH  239 (492)
Q Consensus       165 ~~s~eEL~~lv~~~~~e~~~~g~L~-----~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~  239 (492)
                      .++++||..++...+    ..|.+.     +++++++++++++     +++|++  ++++++.++++. ++++.+.++++
T Consensus        54 ~vt~~eLa~av~~~G----g~G~i~~~~~~e~~~~~i~~v~~~-----~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~  121 (491)
T 1zfj_A           54 TVTGSKMAIAIARAG----GLGVIHKNMSITEQAEEVRKVKRS-----ENGVII--DPFFLTPEHKVS-EAEELMQRYRI  121 (491)
T ss_dssp             TTCSHHHHHHHHHTT----CEEEECCSSCHHHHHHHHHHHHHH-----TTTTSS--SCCCBCSSSBHH-HHHHHHHHTTC
T ss_pred             hccHHHHHHHHHHcC----CceEEeCCCCHHHHHHHHHHHhhH-----HhcCcC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            578889999887432    223444     6788899888764     679997  788899999998 99999999999


Q ss_pred             ccceEEeC-CCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCC
Q 011147          240 SRVPIYVG-TPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSP  318 (492)
Q Consensus       240 SRiPV~~~-~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~  318 (492)
                      +++||+++ +.++++|+|+.+|+    .+. .         ..+.+++++             +.+ ..+.+++.+.   
T Consensus       122 ~~~pVvd~~~~~~lvGivt~~Dl----~~~-~---------~~~~~v~~i-------------m~~-~~~~~v~~~~---  170 (491)
T 1zfj_A          122 SGVPIVETLANRKLVGIITNRDM----RFI-S---------DYNAPISEH-------------MTS-EHLVTAAVGT---  170 (491)
T ss_dssp             SEEEEESCTTTCBEEEEEEHHHH----HHC-S---------CSSSBTTTS-------------CCC-SCCCCEETTC---
T ss_pred             CEEEEEEeCCCCEEEEEEEHHHH----hhh-c---------cCCCcHHHH-------------cCC-CCCEEECCCC---
Confidence            99999973 45899999995543    221 1         113344444             111 0112233332   


Q ss_pred             CcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          319 SVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       319 ~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                                       ++.++++.|++.+.+ ++|+      |++|+++|+||.+||++.+..
T Consensus       171 -----------------~l~~a~~~m~~~~~~~lpVV------d~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          171 -----------------DLETAERILHEHRIEKLPLV------DNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             -----------------CHHHHHHHHHHTTCSEEEEE------CTTSBEEEEEEHHHHHHHHHC
T ss_pred             -----------------CHHHHHHHHHHcCCCEEEEE------cCCCcEEEEEEHHHHHHHHhc
Confidence                             366789999999999 9999      889999999999999999874

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.14  E-value=6.8e-12  Score=138.36  Aligned_cols=59  Identities=17%  Similarity=0.174  Sum_probs=52.8

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHH-HcCCccceEEeCCCCceEEEEEccchHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLII-SNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~-~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      ++.+|+|+|+||.++.+++.+++++ |+.+.+. +++|+++||+|+ .++++|+|+.+|+.+
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~-e~~~~~~~~~~~~~~PVvd~-~~~lvGiVt~~DL~~  510 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQ-HIKGILEKFPNRLVFPVIDA-NGYLLGAISRKEIVD  510 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHH-HHHHHHHHSTTCCEECBBCT-TCBBCCEESHHHHTT
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHH-HHHHHHHhcCCcceEEEEec-CCeEEEEEEHHHHHH
Confidence            6789999999999999999999998 9999999 799999999975 478999999666543

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.13  E-value=1.8e-10  Score=115.07  Aligned_cols=135  Identities=11%  Similarity=0.114  Sum_probs=96.1

Q ss_pred             cccccccccc---cccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHH
Q 011147          201 DMTQKTAKDA---MTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAE  277 (492)
Q Consensus       201 ~l~~~~V~di---MtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~  277 (492)
                      .+.+.+|+++   |+  .++.+++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+++.+......      
T Consensus       183 ~~~~~~v~~~~~~m~--~~~~~v~~~~~~~-~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~~~~~~------  252 (323)
T 3t4n_C          183 HFLKIPIGDLNIITQ--DNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIYN------  252 (323)
T ss_dssp             GGCCSBGGGTTCSBC--TTCCCBCTTSBHH-HHHHHHHHHTCSEEEEECT-TCBEEEEEETTHHHHHHHTTHHH------
T ss_pred             hhhhCcHHHcCCCCC--CCcEEECCCCcHH-HHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHHHHHHhhchhh------
Confidence            3556789999   65  4778899999998 9999999999999999975 37899999988876655432210      


Q ss_pred             hhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecc
Q 011147          278 MEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEEL  356 (492)
Q Consensus       278 ~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~  356 (492)
                        ..+.++++++.-.+.+      .   ...+.++.+.                    ++.++++.|.+++.+ ++|+  
T Consensus       253 --~~~~~v~~~m~~~~~~------~---~~~~~v~~~~--------------------~l~~~~~~m~~~~~~~l~Vv--  299 (323)
T 3t4n_C          253 --DLSLSVGEALMRRSDD------F---EGVYTCTKND--------------------KLSTIMDNIRKARVHRFFVV--  299 (323)
T ss_dssp             --HTTSBHHHHGGGSCTT------C---CCCEEECTTC--------------------BHHHHHHHHHHSCCCEEEEE--
T ss_pred             --hccCCHHHHHhhcccc------C---CCCEEECCCC--------------------CHHHHHHHHHHhCCCEEEEE--
Confidence              1123344431100000      0   0111123322                    377889999999999 9999  


Q ss_pred             cCCCCCCCcEEEEechhHHHHHHccC
Q 011147          357 ESLPSVDEEVIGIITLEDVMEELLQE  382 (492)
Q Consensus       357 ~~~pde~g~vvGIITlEDViEeLlge  382 (492)
                          |++|+++||||..||++.++++
T Consensus       300 ----d~~~~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          300 ----DDVGRLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             ----CTTSBEEEEEEHHHHHHHHHHC
T ss_pred             ----CCCCcEEEEEEHHHHHHHHHhc
Confidence                7899999999999999999983

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.10  E-value=2.3e-11  Score=130.59  Aligned_cols=150  Identities=13%  Similarity=0.150  Sum_probs=98.6

Q ss_pred             cccCHHHHHHHHHhhccccCCCCCC-----ChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcC
Q 011147          164 ALLRRAELKTLVDMHGNEAGKGGEL-----THDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNG  238 (492)
Q Consensus       164 ~~~s~eEL~~lv~~~~~e~~~~g~L-----~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~  238 (492)
                      ..+|++++...+...+    .-|.|     .+++.++++++     ++++++|+  .++++++.++++. ++++.+.+++
T Consensus        52 dtVTe~~ma~a~a~~G----GiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~--~d~v~v~~~~tv~-ea~~~m~~~~  119 (496)
T 4fxs_A           52 DTVTEARLAIALAQEG----GIGFIHKNMSIEQQAAQVHQV-----KIFEAGVV--THPVTVRPEQTIA-DVMELTHYHG  119 (496)
T ss_dssp             TTTCSHHHHHHHHHHT----CEEEECSSSCHHHHHHHHHHH-----HHCCC--C--BCCCCBCSSSBHH-HHHHHHTSSC
T ss_pred             chhhHHHHHHHHHHcC----CcceecCCCCHHHHHHHHHhc-----cccccccc--cCceEECCCCCHH-HHHHHHHHcC
Confidence            3578999998887432    12444     56778999998     67789998  4788999999998 9999999999


Q ss_pred             CccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCC
Q 011147          239 HSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSP  318 (492)
Q Consensus       239 ~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~  318 (492)
                      |+++||++++ ++++|+|+.+|        +....      ..+.+++++             +++.....++++..+  
T Consensus       120 ~s~~PVvd~~-~~lvGiVt~rD--------L~~~~------~~~~~v~di-------------M~p~~~~vtv~~~~~--  169 (496)
T 4fxs_A          120 FAGFPVVTEN-NELVGIITGRD--------VRFVT------DLTKSVAAV-------------MTPKERLATVKEGAT--  169 (496)
T ss_dssp             CCEEEEECSS-SBEEEEEEHHH--------HTTCC------CTTSBGGGT-------------SEEGGGCCEEECC----
T ss_pred             CcEEEEEccC-CEEEEEEEHHH--------Hhhcc------cCCCcHHHH-------------hcCCCCCEEECCCCC--
Confidence            9999999864 89999999444        22110      112334443             110011233455543  


Q ss_pred             CcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHH
Q 011147          319 SVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEEL  379 (492)
Q Consensus       319 ~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeL  379 (492)
                                        +.++++.|++++.+ ++|+      |++|+++|+||++|+++..
T Consensus       170 ------------------l~ea~~~m~~~~i~~lpVV------De~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          170 ------------------GAEVQEKMHKARVEKILVV------NDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             --------------------CGGGTCC---CCCEEEE------CTTSBCCEEECCC-----C
T ss_pred             ------------------HHHHHHHHHHcCCCEEEEE------cCCCCEEEeehHhHHHHhh
Confidence                              33458899999999 9999      8999999999999999875

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.09  E-value=6.1e-10  Score=109.33  Aligned_cols=65  Identities=11%  Similarity=0.124  Sum_probs=55.7

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCC-CceEEEEEccchHHHHHHh
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTP-TNIIGAILGHSHMAVVVKC  268 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~-d~IvGiv~~~d~m~~vvk~  268 (492)
                      ...+.+|+|+|++  +++++..++++. ++.+++.++++++|||++++. +.++|+|..+|+++.+.+.
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~-~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~   74 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRR   74 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHh
Confidence            4567899999985  789999999998 999999999999999998642 5699999999887766544

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.09  E-value=3.3e-10  Score=111.68  Aligned_cols=149  Identities=15%  Similarity=0.195  Sum_probs=103.4

Q ss_pred             ccCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceE
Q 011147          165 LLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPI  244 (492)
Q Consensus       165 ~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV  244 (492)
                      .+|.+||...+..    +.   ..    .+...+.+++.+.+|+++|++  ++++++.++++. ++++.+.+++++++||
T Consensus        64 ivT~~Di~~~~~~----~~---~~----~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpV  129 (296)
T 3ddj_A           64 LLTTRDLLSTVES----YC---KD----SCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPV  129 (296)
T ss_dssp             EEEHHHHHGGGTT----CC----------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEE
T ss_pred             EEeHHHHHHHhcc----cc---cc----cccchhhHHHhcccHHHhccC--CCEEEcCCCCHH-HHHHHHHHcCCCEEEE
Confidence            4677887776641    10   00    334555566778999999997  678899999998 9999999999999999


Q ss_pred             EeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccch
Q 011147          245 YVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSD  324 (492)
Q Consensus       245 ~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~  324 (492)
                      +++ .++++|+++.+|+    ++.+...       ....+++++             +.+..  ..++.+.         
T Consensus       130 vd~-~~~lvGivt~~dl----~~~~~~~-------~~~~~v~~~-------------m~~~~--~~v~~~~---------  173 (296)
T 3ddj_A          130 VDI-NDKPVGIVTEREF----LLLYKDL-------DEIFPVKVF-------------MSTKV--QTIYKEV---------  173 (296)
T ss_dssp             ECT-TSCEEEEEEHHHH----GGGGGGS-------CCCCBHHHH-------------SBCSC--CCEETTS---------
T ss_pred             EcC-CCcEEEEEeHHHH----HHhhhcc-------cccccHHHh-------------hcCCC--eEECCCC---------
Confidence            975 3789999995543    3332211       011222222             11111  1123322         


Q ss_pred             hhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHc
Q 011147          325 IDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELL  380 (492)
Q Consensus       325 l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLl  380 (492)
                                 ++.++++.|.+.+.+ ++|+      |++|+++|+||.+|+++.+.
T Consensus       174 -----------~l~~~~~~m~~~~~~~~~Vv------d~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          174 -----------RLDQAVKLMLRRGFRRLPVI------DDDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             -----------BHHHHHHHHHHHTCSEEEEE------CTTSCEEEEEEHHHHHHHHH
T ss_pred             -----------CHHHHHHHHHHcCCCEEEEE------cCCCEEEEEEEHHHHHHHHH
Confidence                       366789999999998 9999      78999999999999999886

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.07  E-value=3.6e-10  Score=111.40  Aligned_cols=132  Identities=15%  Similarity=0.182  Sum_probs=94.1

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS  281 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~  281 (492)
                      ..+.+|+++|++  ++.+++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+++.+.+.......   ....
T Consensus       153 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~~~~---~~~~  225 (296)
T 3ddj_A          153 DEIFPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLAKAVDKLDP---DYFY  225 (296)
T ss_dssp             CCCCBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHHHHTCT---HHHH
T ss_pred             cccccHHHhhcC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHHHHhhcCh---hhhc
Confidence            346689999985  678899999998 9999999999999999974 37899999977766555432211000   0001


Q ss_pred             cCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCC
Q 011147          282 KAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLP  360 (492)
Q Consensus       282 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~p  360 (492)
                      +.++.++             +.+.  +..++.+.                    ++.++++.|.+.+.+ ++|+      
T Consensus       226 ~~~v~~~-------------m~~~--~~~v~~~~--------------------~l~~a~~~m~~~~~~~l~Vv------  264 (296)
T 3ddj_A          226 GKVVKDV-------------MVTN--LVTIDELA--------------------SVNRAAAEMIVKRIGSLLIL------  264 (296)
T ss_dssp             TCBHHHH-------------SBCC--CCBCCTTS--------------------BHHHHHHHHHHHTCSEEEEE------
T ss_pred             CcCHHHH-------------hCCC--CeEECCCC--------------------cHHHHHHHHHHcCCCEEEEE------
Confidence            1222222             1111  11123222                    377889999999999 9999      


Q ss_pred             CCCCcEEEEechhHHHHHHcc
Q 011147          361 SVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       361 de~g~vvGIITlEDViEeLlg  381 (492)
                      |++|+++||||..||++.+.+
T Consensus       265 d~~g~~~Giit~~Dil~~l~~  285 (296)
T 3ddj_A          265 NKDNTIRGIITERDLLIALHH  285 (296)
T ss_dssp             CTTSCEEEEEEHHHHHHHHHH
T ss_pred             CCCCeEEEEEcHHHHHHHHHH
Confidence            789999999999999999987

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.07  E-value=2.6e-10  Score=123.04  Aligned_cols=126  Identities=11%  Similarity=0.083  Sum_probs=91.8

Q ss_pred             ccccccccccccCcceEEEeCC-CChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhh
Q 011147          202 MTQKTAKDAMTAMSKIFSLDIN-SRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEK  280 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~-~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~  280 (492)
                      +.+.+|+|+|++  ++++++.+ +++. ++++.+.+++++++||++++.++++|+|+.+|+++.+.....         .
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~-ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~---------~  448 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVG-EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNR---------Q  448 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHH-HHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCC---------C
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHH-HHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccC---------c
Confidence            557899999985  77889999 9998 999999999999999998445789999997776665554321         1


Q ss_pred             ccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcceEEecccCCC
Q 011147          281 SKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLP  360 (492)
Q Consensus       281 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~~lVv~~~~~p  360 (492)
                      .+.+++++             |.+..  ..++.+.                    ++.++++.|.+.+. ++|+      
T Consensus       449 ~~~~V~~i-------------m~~~~--~~v~~~~--------------------~l~~a~~~m~~~~~-~pVV------  486 (527)
T 3pc3_A          449 QSDPAIKA-------------LNKRV--IRLNESE--------------------ILGKLARVLEVDPS-VLIL------  486 (527)
T ss_dssp             TTSBGGGG-------------EETTC--CEEETTS--------------------BHHHHHHHHTTCSE-EEEE------
T ss_pred             CCCcHHHH-------------hcCCC--eEECCCC--------------------cHHHHHHHHhhCCE-EEEE------
Confidence            13344444             21111  1123332                    36677899965443 7788      


Q ss_pred             CC----CCcEEEEechhHHHHHHcc
Q 011147          361 SV----DEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       361 de----~g~vvGIITlEDViEeLlg  381 (492)
                      |+    +|+++||||.+||++.|..
T Consensus       487 d~~~~~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          487 GKNPAGKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             EECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred             eCCcccCCeEEEEEEHHHHHHHHHh
Confidence            55    4899999999999999986

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.03  E-value=9.8e-10  Score=106.62  Aligned_cols=137  Identities=14%  Similarity=0.211  Sum_probs=86.9

Q ss_pred             cccc-ccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          206 TAKD-AMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       206 ~V~d-iMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      ++++ +|++  ++++++.++++. ++++.+.+++++++||++++.++++|+++.+|+++    .+......... . +..
T Consensus         4 ~v~~~i~~~--~~~~v~~~~sl~-~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~----~~~~~~~~~~~-~-~~~   74 (280)
T 3kh5_A            4 RVMKIAQNK--KIVTVYPTTTIR-KALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVD----FMGGGSKYNLI-R-EKH   74 (280)
T ss_dssp             BGGGTSCCS--CCCCBCTTSBHH-HHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHH----HTTTSGGGHHH-H-TTS
T ss_pred             hHHHHhcCC--CcEEECCCCcHH-HHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHH----Hhcccchhhhh-h-hcc
Confidence            3445 4554  789999999998 99999999999999999865689999999665543    32211000000 0 000


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      ...+   ........+.++.. ....++.+.                    ++.++++.|.+++.+ ++|+      |++
T Consensus        75 ~~~~---~~~~~~~v~~im~~-~~~~v~~~~--------------------~~~~a~~~~~~~~~~~~~Vv------d~~  124 (280)
T 3kh5_A           75 ERNF---LAAINEPVREIMEE-NVITLKENA--------------------DIDEAIETFLTKNVGGAPIV------NDE  124 (280)
T ss_dssp             TTCH---HHHTTSBGGGTSBC-SCCCEETTC--------------------BHHHHHHHHHHTTCSEEEEE------CTT
T ss_pred             ccch---hHHhhhhHHHhcCC-CCEEECCCC--------------------CHHHHHHHHHhCCCCEEEEE------cCC
Confidence            0000   00000111111111 111123322                    366789999999988 9999      789


Q ss_pred             CcEEEEechhHHHHHHcc
Q 011147          364 EEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       364 g~vvGIITlEDViEeLlg  381 (492)
                      |+++||||.+|+++.+.+
T Consensus       125 ~~~~Givt~~dl~~~~~~  142 (280)
T 3kh5_A          125 NQLISLITERDVIRALLD  142 (280)
T ss_dssp             CBEEEEEEHHHHHHHHGG
T ss_pred             CEEEEEEEHHHHHHHHhh
Confidence            999999999999999876

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.03  E-value=2.9e-10  Score=122.44  Aligned_cols=151  Identities=12%  Similarity=0.130  Sum_probs=104.9

Q ss_pred             ccCHHHHHHHHHhhccccCCCCCCC-----hhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCC
Q 011147          165 LLRRAELKTLVDMHGNEAGKGGELT-----HDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGH  239 (492)
Q Consensus       165 ~~s~eEL~~lv~~~~~e~~~~g~L~-----~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~  239 (492)
                      .++++++...+...+.    -|.|.     +++.++++.+..     ++++|++  ++++++.++++. ++++.+.+++|
T Consensus        77 tvTe~~lAia~a~~Gg----iGvIh~~~~~~~q~~~V~~V~~-----~~~~m~~--d~v~l~~~~tv~-ea~~~m~~~~~  144 (511)
T 3usb_A           77 TVTEADMAIAMARQGG----LGIIHKNMSIEQQAEQVDKVKR-----SESGVIS--DPFFLTPEHQVY-DAEHLMGKYRI  144 (511)
T ss_dssp             TTCSHHHHHHHHHHTC----EEEECSSSCHHHHHHHHHHHHT-----SSSCSSS--SCCCBCTTSBHH-HHHHHHHHHCC
T ss_pred             hhcHHHHHHHHHhcCC----ceeecccCCHHHHHHHHHHhhc-----ccccccc--CCEEECCCCCHH-HHHHHHHHcCC
Confidence            5688999877764221    13332     344556666654     4466764  778899999998 99999999999


Q ss_pred             ccceEEeC-CCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCC
Q 011147          240 SRVPIYVG-TPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSP  318 (492)
Q Consensus       240 SRiPV~~~-~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~  318 (492)
                      +++||+++ ..++++|+|+.+|        +....      ..+.+++++             |++ ...+++|...   
T Consensus       145 s~~pVvd~g~~~~lvGiVt~rD--------l~~~~------~~~~~V~~v-------------M~~-~~~vtv~~~~---  193 (511)
T 3usb_A          145 SGVPVVNNLDERKLVGIITNRD--------MRFIQ------DYSIKISDV-------------MTK-EQLITAPVGT---  193 (511)
T ss_dssp             SEEEEESCTTTCBEEEEEEHHH--------HTTCC------CSSSBHHHH-------------CCC-CCCCCEETTC---
T ss_pred             cEEEEEecCCCCEEEEEEEehH--------hhhhc------cCCCcHHHh-------------ccc-CCCEEECCCC---
Confidence            99999975 1479999999444        22110      112333333             211 1223345443   


Q ss_pred             CcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          319 SVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       319 ~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                                       ++.++++.|++++.+ ++|+      |++|+++|+||++|+++++..
T Consensus       194 -----------------~l~eal~~m~~~~i~~lpVV------De~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          194 -----------------TLSEAEKILQKYKIEKLPLV------DNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             -----------------CHHHHHHHHHHHTCSEEEEE------CTTSBEEEEEEHHHHHHHHHC
T ss_pred             -----------------CHHHHHHHHHHcCCCEEEEE------eCCCCEeeeccHHHHHHhhhc
Confidence                             366789999999999 9999      899999999999999999864

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.01  E-value=4.2e-11  Score=128.68  Aligned_cols=157  Identities=7%  Similarity=0.024  Sum_probs=20.9

Q ss_pred             ccCHHHHHHHHHhhccccCCCCCCC-hhHHHHHhhcccccccccccc-cccCcceEEEeCCCChHHHHHHHHHHcCCccc
Q 011147          165 LLRRAELKTLVDMHGNEAGKGGELT-HDETTIITGALDMTQKTAKDA-MTAMSKIFSLDINSRLDEKTMGLIISNGHSRV  242 (492)
Q Consensus       165 ~~s~eEL~~lv~~~~~e~~~~g~L~-~~E~~iI~~vl~l~~~~V~di-MtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRi  242 (492)
                      .++++++...+...+..+-=...++ +++++++.++..      .++ |+|  ++++++.++++. ++++.+.+++|+++
T Consensus        61 ~vt~~~la~~la~~gg~G~I~~~~~~e~~~~~v~~V~~------~e~gM~~--~~~~v~~~~tv~-eal~~m~~~~~s~~  131 (503)
T 1me8_A           61 SVSGEKMAIALAREGGISFIFGSQSIESQAAMVHAVKN------FKAGFVV--SDSNVKPDQTFA-DVLAISQRTTHNTV  131 (503)
T ss_dssp             TTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHT------TTC---------------------------------
T ss_pred             hhhHHHHHHHHHhCCCcceeeCCCCHHHHHHHHhhhhh------cccCccc--CCeEECCCCcHH-HHHHHHHHcCceEE
Confidence            4678899887764221000000122 466777766544      456 987  889999999998 99999999999999


Q ss_pred             eEEeCC--CCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCc
Q 011147          243 PIYVGT--PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSV  320 (492)
Q Consensus       243 PV~~~~--~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~  320 (492)
                      ||++++  .++++|+|+.+|+...      ..       ..+.+++++             +.+...+..++.+.+    
T Consensus       132 pVvd~~~~~g~lvGiVt~~Dl~~~------~~-------~~~~~V~di-------------M~~~~~~~tv~~~~s----  181 (503)
T 1me8_A          132 AVTDDGTPHGVLLGLVTQRDYPID------LT-------QTETKVSDM-------------MTPFSKLVTAHQDTK----  181 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEECCCcCCeEEEEEEHHHHHhh------hc-------cccCcHHHH-------------hCCCCCCEEEcCCCc----
Confidence            999864  3789999997665321      00       112344444             111101222344432    


Q ss_pred             ccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccC
Q 011147          321 ISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQE  382 (492)
Q Consensus       321 ~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlge  382 (492)
                                      +.++++.|++++.+ ++|+      |++|+++||||++||++.+.+.
T Consensus       182 ----------------l~ea~~~m~~~~i~~lpVV------De~g~lvGiIT~~Dil~~~~~~  222 (503)
T 1me8_A          182 ----------------LSEANKIIWEKKLNALPII------DDDQHLRYIVFRKDYDRSQVCH  222 (503)
T ss_dssp             --------------------------------------------------------------C
T ss_pred             ----------------HHHHHHHHHHcCCCEEEEE------cCCCeEEEEEEecHHHHhhhcc
Confidence                            55679999999999 9999      7899999999999999999863

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.93  E-value=1.5e-10  Score=123.92  Aligned_cols=145  Identities=11%  Similarity=0.197  Sum_probs=24.4

Q ss_pred             ccCHHHHHHHHHhhccccCCCCCCC-----hhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCC
Q 011147          165 LLRRAELKTLVDMHGNEAGKGGELT-----HDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGH  239 (492)
Q Consensus       165 ~~s~eEL~~lv~~~~~e~~~~g~L~-----~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~  239 (492)
                      ..+++|+...+...+    ..|.+.     +++++++.+++++++     +|+  .++++++.++++. ++++.+.+++|
T Consensus        57 ~vt~~ela~ava~~G----glG~i~~~~~~e~~~~~I~~v~~~~~-----~m~--~~~~~v~~~~tv~-ea~~~~~~~~~  124 (486)
T 2cu0_A           57 TVTEWEMAVAMAREG----GLGVIHRNMGIEEQVEQVKRVKRAER-----LIV--EDVITIAPDETVD-FALFLMEKHGI  124 (486)
T ss_dssp             TTCSHHHHHHHHHTT----CEEEECSSSCHHHHHHHHHHHHTCC------------------------------------
T ss_pred             eecHHHHHHHHHhcC----CceeecCCCCHHHHHHHHHhhcchhh-----ccc--cCceEECCCCCHH-HHHHHHHHcCC
Confidence            467889988886422    123343     577899999988754     687  4889999999998 99999999999


Q ss_pred             ccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCC
Q 011147          240 SRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPS  319 (492)
Q Consensus       240 SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~  319 (492)
                      +++||+++  ++++|+|+.+|+..       +    .     +.+++++             +.+  .+.+++.+.+   
T Consensus       125 ~~~pVvd~--~~lvGivt~~Dl~~-------~----~-----~~~v~~i-------------m~~--~~~~v~~~~~---  168 (486)
T 2cu0_A          125 DGLPVVED--EKVVGIITKKDIAA-------R----E-----GKLVKEL-------------MTK--EVITVPESIE---  168 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEEC--CEEEEEEEHHHhcc-------C----C-----CCCHHHH-------------ccC--CCeEECCcCc---
Confidence            99999986  89999999666432       0    0     1233333             111  1222344432   


Q ss_pred             cccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHc
Q 011147          320 VISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELL  380 (492)
Q Consensus       320 ~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLl  380 (492)
                                       +.++++.|++.+.+ ++|+      |++|+++|+||.+||++++-
T Consensus       169 -----------------l~eal~~m~~~~~~~lpVV------de~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          169 -----------------VEEALKIMIENRIDRLPVV------DERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             -------------------------------------------------------------C
T ss_pred             -----------------HHHHHHHHHHcCCCEEEEE------ecCCeEEEEEEHHHHHHhhh
Confidence                             45678999999999 9999      78999999999999999874

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.92  E-value=9e-09  Score=97.72  Aligned_cols=117  Identities=8%  Similarity=0.081  Sum_probs=86.6

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      -+++++|++  ++++++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+.    +...           +.+
T Consensus        13 ~~~~~~~~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~-~~~l~Givt~~dl~----~~~~-----------~~~   73 (213)
T 1vr9_A           13 MKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLL----DLDL-----------DSS   73 (213)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGT----TSCT-----------TSB
T ss_pred             cCHHHhhcC--CCeEECCCCcHH-HHHHHHHHCCCCEEEEEcC-CCEEEEEEEHHHHH----hhcC-----------CCc
Confidence            468889985  778899999998 9999999999999999974 37899999965532    1111           123


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      ++++             +.+.  +..++.+.                    ++.++++.|.+.+.+ ++|+      |++
T Consensus        74 v~~i-------------m~~~--~~~v~~~~--------------------~l~~a~~~m~~~~~~~lpVv------d~~  112 (213)
T 1vr9_A           74 VFNK-------------VSLP--DFFVHEED--------------------NITHALLLFLEHQEPYLPVV------DEE  112 (213)
T ss_dssp             SGGG-------------CBCT--TCCEETTS--------------------BHHHHHHHHHHCCCSEEEEE------CTT
T ss_pred             HHHH-------------ccCC--CEEECCCC--------------------cHHHHHHHHHHhCCCEEEEE------cCC
Confidence            4433             1111  11123222                    366789999999988 9999      778


Q ss_pred             CcEEEEechhHHHHHHcc
Q 011147          364 EEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       364 g~vvGIITlEDViEeLlg  381 (492)
                      |+++||||..|+++.+..
T Consensus       113 g~lvGiit~~Dil~~~~~  130 (213)
T 1vr9_A          113 MRLKGAVSLHDFLEALIE  130 (213)
T ss_dssp             CBEEEEEEHHHHHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHHH
Confidence            999999999999998865

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.89  E-value=2.1e-10  Score=122.88  Aligned_cols=149  Identities=11%  Similarity=0.149  Sum_probs=24.4

Q ss_pred             cccCHHHHHHHHHhhccccCCCCCCC-----hhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcC
Q 011147          164 ALLRRAELKTLVDMHGNEAGKGGELT-----HDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNG  238 (492)
Q Consensus       164 ~~~s~eEL~~lv~~~~~e~~~~g~L~-----~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~  238 (492)
                      ..++++++...+...+.    -|.+.     +++.+++.++     ++++++|++  ++++++.++++. ++++.+.+++
T Consensus        51 ~tVTe~~lA~ala~~GG----iGvI~~~~~~e~~a~~v~~v-----k~~~~~m~~--~~v~v~~~~tv~-ea~~~m~~~~  118 (490)
T 4avf_A           51 DTVTEARLAIAMAQEGG----IGIIHKNMGIEQQAAEVRKV-----KKHETAIVR--DPVTVTPSTKII-ELLQMAREYG  118 (490)
T ss_dssp             TTTCSHHHHHHHHHHTS----EEEECCSSCHHHHHHHHHHH-----HHCCC-----------------------------
T ss_pred             hhhCHHHHHHHHHHcCC----CccccCCCCHHHHHHHhhhh-----cccccCccc--CceEeCCCCcHH-HHHHHHHHhC
Confidence            35788999988874321    23343     5667888877     557889984  778999999998 9999999999


Q ss_pred             CccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCC
Q 011147          239 HSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSP  318 (492)
Q Consensus       239 ~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~  318 (492)
                      |+++||++  .++++|+|+.+|+.     ...         ..+.+++++             |++......++...   
T Consensus       119 ~s~~pVvd--~g~lvGIVt~rDl~-----~~~---------~~~~~V~~v-------------Mtp~~~~vtv~~~~---  166 (490)
T 4avf_A          119 FSGFPVVE--QGELVGIVTGRDLR-----VKP---------NAGDTVAAI-------------MTPKDKLVTAREGT---  166 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEEEEEE--CCEEEEEEEhHHhh-----hcc---------ccCCcHHHH-------------hccCCCCEEECCCC---
Confidence            99999998  47999999966632     111         112344444             11000122234433   


Q ss_pred             CcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHH
Q 011147          319 SVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEEL  379 (492)
Q Consensus       319 ~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeL  379 (492)
                                       ++.++++.|++++.+ ++|+      |++|+++|+||++|+++..
T Consensus       167 -----------------~l~ea~~~m~~~~i~~lpVV------De~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          167 -----------------PLEEMKAKLYENRIEKMLVV------DENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             --------------------------------------------------------------
T ss_pred             -----------------cHHHHHHHHHHcCCCEEEEE------cCCCcEEEEEehHHhhhhc
Confidence                             355679999999999 9999      8999999999999999976

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.88  E-value=6.4e-09  Score=104.17  Aligned_cols=128  Identities=11%  Similarity=0.137  Sum_probs=90.8

Q ss_pred             ccccccc---ccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhh
Q 011147          203 TQKTAKD---AMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEME  279 (492)
Q Consensus       203 ~~~~V~d---iMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~  279 (492)
                      ...+|++   +|+  .++.+++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+++.+.+....        
T Consensus       180 ~~~~v~~l~~~m~--~~~~~v~~~~~~~-~~~~~m~~~~~~~~~Vvd~-~~~~~Giit~~dl~~~~~~~~~~--------  247 (334)
T 2qrd_G          180 LRVPLNQMTIGTW--SNLATASMETKVY-DVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDGDYS--------  247 (334)
T ss_dssp             CCCBGGGSSCSBC--SSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECT-TCBEEEEEETHHHHHHHTTSCGG--------
T ss_pred             hhCcHHHhCCccc--CCceEECCCCcHH-HHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHHHHhhccccc--------
Confidence            4578889   477  4678899999998 9999999999999999974 36899999977765444322100        


Q ss_pred             hccCCCcccccccchhhhhhcccccc----ccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEe
Q 011147          280 KSKAPMQHDININSNLKQRQGELKGN----VQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKE  354 (492)
Q Consensus       280 ~~~~~v~~v~~~~~~~~~~~~~~~~~----~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv  354 (492)
                      ..+.++.++             +.+.    ..+..++.+.                    ++.++++.|.+++.+ ++|+
T Consensus       248 ~~~~~v~~~-------------m~~~~~~~~~~~~v~~~~--------------------~l~~~~~~m~~~~~~~l~Vv  294 (334)
T 2qrd_G          248 NLDLSVGEA-------------LLKRPANFDGVHTCRATD--------------------RLDGIFDAIKHSRVHRLFVV  294 (334)
T ss_dssp             GGGSBHHHH-------------HTTCCTTCCCCCEECTTC--------------------BHHHHHHHHHHSCCCEEEEE
T ss_pred             cccCcHHHH-------------HhcccccCCCCEEECCCC--------------------cHHHHHHHHHHcCCCEEEEE
Confidence            011223222             1100    0111122222                    367889999999999 9999


Q ss_pred             cccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          355 ELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       355 ~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                            |++|+++||||..|+++.+.+
T Consensus       295 ------d~~g~l~Giit~~dil~~~~~  315 (334)
T 2qrd_G          295 ------DENLKLEGILSLADILNYIIY  315 (334)
T ss_dssp             ------CTTCBEEEEEEHHHHHHHHHS
T ss_pred             ------CCCCeEEEEEeHHHHHHHHHh
Confidence                  788999999999999999987

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.87  E-value=5.2e-09  Score=100.84  Aligned_cols=60  Identities=15%  Similarity=0.233  Sum_probs=51.3

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHH
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVK  267 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk  267 (492)
                      ..+|+|+|++  ++.+++.++++. ++++.+.+++++++||+++ .++++|+++.+|+++.+..
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpVvd~-~~~l~Giit~~di~~~~~~   65 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLK-MAWNIMRDKNLKSIPVADG-NNHLLGMLSTSNITATYMD   65 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHH-HHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHHC
T ss_pred             cCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHH
Confidence            4689999985  678899999998 9999999999999999975 3789999998877666543

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.87  E-value=4.2e-09  Score=102.53  Aligned_cols=117  Identities=13%  Similarity=0.159  Sum_probs=73.1

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      ++|+|+|++  ++++++.++++. ++++.+.+++++++||+++ .++++|+++.+|++...    .           +.+
T Consensus         1 m~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pV~d~-~~~~~Giv~~~dl~~~~----~-----------~~~   61 (282)
T 2yzq_A            1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNP----D-----------EEQ   61 (282)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECT-TCCEEEEEESSCC-----------------------
T ss_pred             CchHHhccC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhhh----c-----------cCC
Confidence            368999994  778899999998 9999999999999999975 47899999987764321    1           122


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      ++++             +.+.  ...++.+.                    ++.++++.|.+.+.+ ++|+      |++
T Consensus        62 v~~~-------------m~~~--~~~v~~~~--------------------~l~~a~~~m~~~~~~~~~Vv------d~~  100 (282)
T 2yzq_A           62 LAML-------------VKRD--VPVVKEND--------------------TLKKAAKLMLEYDYRRVVVV------DSK  100 (282)
T ss_dssp             --CC-------------CBSC--CCEEETTS--------------------BHHHHHHHHHHHTCSEEEEE------CTT
T ss_pred             HHHH-------------cCCC--CcEECCCC--------------------cHHHHHHHHHHcCCCEEEEE------cCC
Confidence            3333             1111  11123222                    366789999999988 9999      788


Q ss_pred             CcEEEEechhHHHH-HHcc
Q 011147          364 EEVIGIITLEDVME-ELLQ  381 (492)
Q Consensus       364 g~vvGIITlEDViE-eLlg  381 (492)
                      |+++|+||.+|+++ .+.+
T Consensus       101 ~~~~Giit~~di~~~~~~~  119 (282)
T 2yzq_A          101 GKPVGILTVGDIIRRYFAK  119 (282)
T ss_dssp             SCEEEEEEHHHHHHHTTTT
T ss_pred             CEEEEEEEHHHHHHHHHhc
Confidence            99999999999999 6654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.80  E-value=2.2e-08  Score=97.46  Aligned_cols=134  Identities=9%  Similarity=0.143  Sum_probs=87.2

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH------HHHHHh---hccc-
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM------AVVVKC---KNDS-  272 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m------~~vvk~---l~~~-  272 (492)
                      .+.+++++|++  ++.+++.++++. ++++.+.+++++++||.++ .++++|++..+|++      +.+-+.   +... 
T Consensus       124 ~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~  199 (282)
T 2yzq_A          124 KGVEIEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDS-EGNLVGIVDETDLLRDSEIVRIMKSTELAASSEE  199 (282)
T ss_dssp             GGCBSTTTSBS--CCCCEETTSBHH-HHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGGGCGGGCC-------------
T ss_pred             ccCcHHHHhCC--CCEEECCCCCHH-HHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhh
Confidence            46789999974  677899999998 9999999999999999974 36899999988765      211000   0000 


Q ss_pred             ----hhhHH-------hhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHH
Q 011147          273 ----KEIAE-------MEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCL  341 (492)
Q Consensus       273 ----~~~~~-------~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l  341 (492)
                          .....       ....+.+++++             +.+.  +..+..+                    .++.+|+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~i-------------m~~~--~~~v~~~--------------------~~l~~a~  244 (282)
T 2yzq_A          200 EWILESHPTLLFEKFELQLPNKPVAEI-------------MTRD--VIVATPH--------------------MTVHEVA  244 (282)
T ss_dssp             -------------------CCCBGGGT-------------CBSS--CCCBCTT--------------------SBHHHHH
T ss_pred             hhhcccchHHHHhHhhhhhccCCHHHh-------------cCCC--CceeCCC--------------------CCHHHHH
Confidence                00000       00001112111             1111  1111221                    2367889


Q ss_pred             HHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          342 KKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       342 ~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      +.|.+++.+ ++|+      |++|+++||||..|+++.+.+
T Consensus       245 ~~m~~~~~~~lpVv------d~~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          245 LKMAKYSIEQLPVI------RGEGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             HHHHHHTCSEEEEE------ETTTEEEEEEEHHHHGGGGCC
T ss_pred             HHHHHcCcceeEEE------CCCCCEEEEEeHHHHHHHHHh
Confidence            999999999 9999      677899999999999998765

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.69  E-value=3.4e-08  Score=98.87  Aligned_cols=132  Identities=11%  Similarity=0.179  Sum_probs=87.7

Q ss_pred             ccccccc--cccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147          204 QKTAKDA--MTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS  281 (492)
Q Consensus       204 ~~~V~di--MtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~  281 (492)
                      ..+++++  |+ ..++.+++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+++.+.+....        ..
T Consensus       189 ~~~v~~~~v~~-~~~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~-~~~l~Giit~~dl~~~~~~~~~~--------~~  257 (330)
T 2v8q_E          189 SKSLEELQIGT-YANIAMVRTTTPVY-VALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKTYN--------NL  257 (330)
T ss_dssp             GSBHHHHTCSB-CSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSSCCC--------CC
T ss_pred             cCCHHHhcccC-cCCceEECCCCCHH-HHHHHHHHcCCCeEEEECC-CCcEEEEEEHHHHHHHHhccccc--------cc
Confidence            3566676  54 25778899999998 9999999999999999974 37899999977754322111000        00


Q ss_pred             cCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCC
Q 011147          282 KAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLP  360 (492)
Q Consensus       282 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~p  360 (492)
                      +.++.+++..       ...+.+  ..+.++.+.                    ++.++++.|.+.+.+ ++|+      
T Consensus       258 ~~~v~~~~~~-------~~~~~~--~~~~v~~~~--------------------~l~~a~~~m~~~~~~~l~Vv------  302 (330)
T 2v8q_E          258 DVSVTKALQH-------RSHYFE--GVLKCYLHE--------------------TLEAIINRLVEAEVHRLVVV------  302 (330)
T ss_dssp             SSBHHHHGGG-------CCSCCC--SCCEECTTS--------------------BHHHHHHHHHHHTCSEEEEE------
T ss_pred             cCcHHHHHhc-------cccccC--CCeEECCCC--------------------cHHHHHHHHHHCCCcEEEEE------
Confidence            1122222100       000001  111123322                    367789999999999 9999      


Q ss_pred             CCCCcEEEEechhHHHHHHcc
Q 011147          361 SVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       361 de~g~vvGIITlEDViEeLlg  381 (492)
                      |++|+++||||..|+++.+..
T Consensus       303 d~~g~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          303 DEHDVVKGIVSLSDILQALVL  323 (330)
T ss_dssp             CTTSBEEEEEEHHHHHHHHHS
T ss_pred             cCCCcEEEEEeHHHHHHHHHh
Confidence            788999999999999999975

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.43  E-value=3.8e-08  Score=105.21  Aligned_cols=132  Identities=10%  Similarity=0.180  Sum_probs=13.8

Q ss_pred             CCh-hHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          188 LTH-DETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       188 L~~-~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      ++. +.++.+..++     +++++|++  ++++++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+..   
T Consensus        82 ~~~e~~~~~v~~v~-----~~~~iM~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~-~~~lvGivt~~Dl~~---  149 (494)
T 1vrd_A           82 LTPDEQARQVSIVK-----KTENGIIY--DPITVTPDMTVK-EAIDLMAEYKIGGLPVVDE-EGRLVGLLTNRDVRF---  149 (494)
T ss_dssp             SCHHHHHHHHHHHH-----TC-----------------------------------------------------------
T ss_pred             CChHHHHHHHHhhh-----hHhhcCcc--CCeEECCCCCHH-HHHHHHHHcCceEEEEEcC-CCEEEEEEEHHHHHh---
Confidence            344 3345566554     46788986  788999999998 9999999999999999975 368999999766432   


Q ss_pred             HhhccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhH
Q 011147          267 KCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWER  346 (492)
Q Consensus       267 k~l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~  346 (492)
                       . .+         .+.+++++             |.+...+..++.+.                    ++.++++.|++
T Consensus       150 -~-~~---------~~~~v~~i-------------m~~~~~~~~v~~~~--------------------~l~ea~~~m~~  185 (494)
T 1vrd_A          150 -E-KN---------LSKKIKDL-------------MTPREKLIVAPPDI--------------------SLEKAKEILHQ  185 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -h-cC---------CCCcHHHH-------------hCCCCCCeEECCCC--------------------CHHHHHHHHHH
Confidence             1 10         12234444             11100111122222                    35567899999


Q ss_pred             cCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          347 QDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       347 ~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      .+.+ ++|+      |++|+++||||..|+++.+..
T Consensus       186 ~~~~~lpVV------d~~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          186 HRIEKLPLV------SKDNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             -----------------------------CHHHHTC
T ss_pred             cCCcEEEEE------cCCCeEEEEEEHHHHHhhhcc
Confidence            9998 9999      789999999999999999976

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.08  E-value=2.4e-07  Score=99.53  Aligned_cols=123  Identities=11%  Similarity=0.133  Sum_probs=58.0

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCC--CCceEEEEEccchHHHHHHhhccchhhHHhhhcc
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGT--PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSK  282 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~--~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~  282 (492)
                      ++++++|++  ++++++.++++. ++++.+.+++++++||++++  .++++|+|+.+|+...     ...       ..+
T Consensus       108 ~~~~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~-----~~~-------~~~  172 (514)
T 1jcn_A          108 KNFEQGFIT--DPVVLSPSHTVG-DVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFL-----AEK-------DHT  172 (514)
T ss_dssp             HTCCTTSCS--SCCCCCC------------------CEESCC--------CCEECTTTTC--------------------
T ss_pred             hhhhhcccc--CCEEECCCCCHH-HHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhh-----hhc-------cCC
Confidence            468899985  567899999998 99999999999999999753  4789999997765321     000       012


Q ss_pred             CCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCC
Q 011147          283 APMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPS  361 (492)
Q Consensus       283 ~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pd  361 (492)
                      .+++++             +.+......++...+                    +.++++.|.+.+.+ ++|+      |
T Consensus       173 ~~v~~v-------------m~~~~~~~tv~~~~~--------------------l~ea~~~m~~~~~~~lpVV------d  213 (514)
T 1jcn_A          173 TLLSEV-------------MTPRIELVVAPAGVT--------------------LKEANEILQRSKKGKLPIV------N  213 (514)
T ss_dssp             ---------------------CCBCCCCEETTCC--------------------STTTTTHHHHHTCSCCCEE------S
T ss_pred             CCHHHH-------------hCCCCCCeEECCCCC--------------------HHHHHHHHHHcCCCcccEE------C
Confidence            234433             111001111233333                    33457889999988 9999      7


Q ss_pred             CCCcEEEEechhHHHHHHcc
Q 011147          362 VDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       362 e~g~vvGIITlEDViEeLlg  381 (492)
                      ++|+++|+||..|+++.+..
T Consensus       214 ~~g~lvGiIt~~Dll~~~~~  233 (514)
T 1jcn_A          214 DCDELVAIIARTDLKKNRDY  233 (514)
T ss_dssp             SSSCCC----CCCCSSCCCC
T ss_pred             CCCeEEEEEEHHHHHHHhhC
Confidence            89999999999999887653

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.03  E-value=8.9e-07  Score=94.59  Aligned_cols=125  Identities=9%  Similarity=0.220  Sum_probs=8.3

Q ss_pred             hHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCC--CCceEEEEEccchHHHHHHh
Q 011147          191 DETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGT--PTNIIGAILGHSHMAVVVKC  268 (492)
Q Consensus       191 ~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~--~d~IvGiv~~~d~m~~vvk~  268 (492)
                      ++.++++.+=.++.     .|+  .+.+++.+++++. |+++++.+++||.+||.++.  .+.++|||+.+|+     +.
T Consensus       129 ~Qa~~V~~VKr~e~-----g~i--~dPvtl~P~~Tv~-da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~-----rf  195 (556)
T 4af0_A          129 EQAAMVRRVKKYEN-----GFI--TDPLCLGPDATVG-DVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDV-----QF  195 (556)
T ss_dssp             HHHHHHHHHHHCCC------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhccc-----Ccc--CCCeEcCCCCCHH-HHHHHHHHhCCCccccccccCcCCEEEEEEecccc-----cc
Confidence            45677777754443     454  3567899999998 99999999999999999742  3579999997663     21


Q ss_pred             hccchhhHHhhhccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcC
Q 011147          269 KNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQD  348 (492)
Q Consensus       269 l~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~  348 (492)
                      . +         .+.+++++             |+..  .+.++...                    ++++|.+.|++++
T Consensus       196 ~-d---------~~~~V~ev-------------MT~~--lvt~~~~~--------------------~leeA~~iL~~~k  230 (556)
T 4af0_A          196 Q-D---------AETPIKSV-------------MTTE--VVTGSSPI--------------------TLEKANSLLRETK  230 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c-c---------cceEhhhh-------------cccc--eEEecCCC--------------------CHHHHHHHHHHcc
Confidence            1 1         13455555             2211  11123322                    3556789999999


Q ss_pred             cc-eEEecccCCCCCCCcEEEEechhHHHHHH
Q 011147          349 VK-ISKEELESLPSVDEEVIGIITLEDVMEEL  379 (492)
Q Consensus       349 ~~-~lVv~~~~~pde~g~vvGIITlEDViEeL  379 (492)
                      .. ++||      |++|+++|+||..|+.+.-
T Consensus       231 ieklpVV------d~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          231 KGKLPIV------DSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             --------------------------------
T ss_pred             ccceeEE------ccCCcEEEEEEechhhhhh
Confidence            99 9999      8999999999999998654

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=97.83  E-value=1.1e-05  Score=77.50  Aligned_cols=58  Identities=10%  Similarity=0.196  Sum_probs=49.2

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      ...+|+|+|+| .++.+++.++++. ++++.+.+++++++||++++ ++++|+|+.+|+++
T Consensus       183 ~~~~v~~im~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dll~  240 (245)
T 3l2b_A          183 QSLPVDYVMTK-DNLVAVSTDDLVE-DVKVTMSETRYSNYPVIDEN-NKVVGSIARFHLIS  240 (245)
T ss_dssp             GGSBHHHHSBC-TTCCCEETTSBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEECC----
T ss_pred             cCCceeeEecC-CccEEECCCCcHH-HHHHHHHhcCCceEEEEcCC-CeEEEEEEHHHhhc
Confidence            46789999998 7889999999998 99999999999999999754 78999999887643

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=97.69  E-value=4.1e-05  Score=68.28  Aligned_cols=67  Identities=16%  Similarity=0.211  Sum_probs=56.1

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCC--ceEEEEEccchHHHHHHh
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPT--NIIGAILGHSHMAVVVKC  268 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d--~IvGiv~~~d~m~~vvk~  268 (492)
                      ...+.+|+++|+++.++++++.++++. ++++.+.+++++++||++++.+  +++|+|+.+|+++.+.+.
T Consensus        77 ~~~~~~v~~~m~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~  145 (159)
T 3fv6_A           77 ELTSVPVHIIMTRMPNITVCRREDYVM-DIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSL  145 (159)
T ss_dssp             CTTTCBGGGTSEETTSCCCBCTTSBHH-HHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHH
T ss_pred             cccCcCHHHHHcCCCCcEEECCCCCHH-HHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHH
Confidence            356789999999877888999999998 9999999999999999985322  899999977776665544

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=97.49  E-value=0.00016  Score=62.01  Aligned_cols=60  Identities=8%  Similarity=0.034  Sum_probs=50.3

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVK  267 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk  267 (492)
                      .+.+++++|.|   +.+++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+++.++.
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~pVvd~-~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           67 PALDIRSLVRP---AVFIPEVKRLN-VLLREFRASRNHLAIVIDE-HGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             TTSCGGGGCBC---CCEEETTCBHH-HHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHHHH
T ss_pred             CCcCHHHHhCC---CeEeCCCCcHH-HHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence            46789999974   67899999998 9999999999999999974 4789999997777666554

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=97.48  E-value=0.00011  Score=62.08  Aligned_cols=58  Identities=14%  Similarity=0.240  Sum_probs=49.9

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      .+.+.+++++|++  ++.+++.++++. ++++.+.+++++++||+++  ++++|+|+.+|+++
T Consensus        61 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~  118 (125)
T 1pbj_A           61 DLAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILR  118 (125)
T ss_dssp             CTTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHH
T ss_pred             cccccCHHHHcCC--CCeEECCCCCHH-HHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHH
Confidence            3567899999986  678899999998 9999999999999999986  89999999665443

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=97.47  E-value=0.00022  Score=64.55  Aligned_cols=63  Identities=8%  Similarity=-0.074  Sum_probs=53.0

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhc
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKN  270 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~  270 (492)
                      .+.+|+++|   .++.+++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+++.++..+.
T Consensus       105 ~~~~v~~im---~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dil~~l~~~~~  167 (172)
T 3lhh_A          105 ERLELVDLV---KNCNFVPNSLSGM-ELLEHFRTTGSQMVFVVDE-YGDLKGLVTLQDMMDALTGEFF  167 (172)
T ss_dssp             CCCCGGGGC---BCCEEEETTCCHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHTTCC
T ss_pred             CcccHHHHh---cCCeEeCCCCCHH-HHHHHHHHcCCeEEEEEeC-CCCEEEEeeHHHHHHHHhCCCc
Confidence            367899999   3678899999998 9999999999999999974 4789999998887777665543

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=97.46  E-value=0.00014  Score=62.49  Aligned_cols=59  Identities=19%  Similarity=0.280  Sum_probs=50.5

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVV  265 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~v  265 (492)
                      ..+.+++++|++  ++.+++.++++. ++++.+.+++++++||++ + ++++|+|+.+|+++.+
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dll~~~  129 (135)
T 2rc3_A           71 VKDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKDA  129 (135)
T ss_dssp             GGGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHH
T ss_pred             cccCCHHHhccC--CCeEECCCCcHH-HHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHHHHHHH
Confidence            467899999986  677899999998 999999999999999998 3 7899999966655443

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=97.45  E-value=0.00011  Score=64.96  Aligned_cols=62  Identities=21%  Similarity=0.297  Sum_probs=52.9

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHh
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKC  268 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~  268 (492)
                      ..+.+++++|++  ++.+++.++++. ++++.+.+++++++||+++  ++++|+|+.+|+++.+.+.
T Consensus        75 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~l~~~  136 (157)
T 4fry_A           75 SKATRVEEIMTA--KVRYVEPSQSTD-ECMALMTEHRMRHLPVLDG--GKLIGLISIGDLVKSVIAD  136 (157)
T ss_dssp             SSSCBHHHHSBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTT
T ss_pred             ccccCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHH
Confidence            467899999997  678899999998 9999999999999999983  7999999977766655544

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=97.44  E-value=7e-05  Score=65.05  Aligned_cols=60  Identities=10%  Similarity=0.051  Sum_probs=49.1

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      ..+.+++++|+|   +.+++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+++.++
T Consensus        67 ~~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           67 GDSDDVKKLLRP---ATFVPESKRLN-VLLREFRANHNHMAIVIDE-YGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             GGGCCGGGTCBC---CCEEETTCBHH-HHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHTTC-
T ss_pred             CCCcCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence            456789999975   67899999998 9999999999999999974 478999999666544433

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=97.43  E-value=0.00011  Score=61.89  Aligned_cols=56  Identities=16%  Similarity=0.221  Sum_probs=47.4

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      ..+++++|.+  ++.+++.++++. ++++.+.+++.+++||+++ .++++|+|+.+|+++
T Consensus        61 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~-~g~~~Givt~~dl~~  116 (122)
T 3kpb_A           61 KKTIEEIMTR--NVITAHEDEPVD-HVAIKMSKYNISGVPVVDD-YRRVVGIVTSEDISR  116 (122)
T ss_dssp             CCBGGGTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHH
T ss_pred             ccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCCCeEEEECC-CCCEEEEEeHHHHHH
Confidence            3489999986  667899999998 9999999999999999975 478999999665543

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.41  E-value=0.00013  Score=64.84  Aligned_cols=61  Identities=16%  Similarity=0.311  Sum_probs=51.2

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      ...+.+++++|++   +.+++.++++. ++++.+.++++.++||+++ .++++|+|+.+|+++.+.
T Consensus        92 ~~~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           92 RLIAKNASEIMLD---PVYVHMDTPLE-EALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             CCSSCBHHHHCBC---CCCBCTTSBHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             HHcCCcHHHHcCC---CeEECCCCCHH-HHHHHHHHCCCcEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence            3467889999997   67899999998 9999999999999999974 378999999776655444

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=97.41  E-value=3e-05  Score=70.12  Aligned_cols=56  Identities=14%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      ....+|+++|++  ++++++.++++. ++++.+.+++..++||+++  ++++|+|+.+|++
T Consensus       102 ~~~~~v~~im~~--~~~tv~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~lvGivt~~Dil  157 (170)
T 4esy_A          102 GRKLTASAVMTQ--PVVTAAPEDSVG-SIADQMRRHGIHRIPVVQD--GVPVGIVTRRDLL  157 (170)
T ss_dssp             HTTCBHHHHCBC--CSCCBCTTSBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHT
T ss_pred             ccccchhhhccc--CcccCCcchhHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHH
Confidence            346789999996  778899999998 9999999999999999974  7899999966543

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=97.41  E-value=0.00024  Score=62.24  Aligned_cols=59  Identities=12%  Similarity=0.097  Sum_probs=50.4

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHH
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVK  267 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk  267 (492)
                      +.+++++|.   ++.+++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+++.++.
T Consensus        87 ~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           87 KIELEEILR---DIIYISENLTID-KALERIRKEKLQLAIVVDE-YGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             CCCGGGTCB---CCEEEETTSBHH-HHHHHHHHHTCSEEEEECT-TSSEEEEEEHHHHHHHHHH
T ss_pred             CccHHHhcC---CCeEECCCCCHH-HHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence            788999993   578899999998 9999999999999999974 4789999997777666554

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.41  E-value=5.6e-05  Score=71.34  Aligned_cols=92  Identities=10%  Similarity=0.143  Sum_probs=64.5

Q ss_pred             cCHHHHHHHHHhhccccCCCCCCChhHHHHHhhccccccc-------ccccccccCcceEEEeCCCChHHHHHHHHHHcC
Q 011147          166 LRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQK-------TAKDAMTAMSKIFSLDINSRLDEKTMGLIISNG  238 (492)
Q Consensus       166 ~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~-------~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~  238 (492)
                      .+-+|...++..++.    .+.+--++...+.|++..++.       +|+++|++  ++.+++.++++. ++++.+.+++
T Consensus        30 ~tv~ea~~~m~~~~~----~~~pVvd~~~~l~Givt~~dl~~~~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~  102 (213)
T 1vr9_A           30 ATVRECLHRMRQYQT----NECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQ  102 (213)
T ss_dssp             CBHHHHHHHHHHTTS----SEEEEECTTSBEEEEEEGGGGTTSCTTSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCC
T ss_pred             CcHHHHHHHHHHCCC----CEEEEEcCCCEEEEEEEHHHHHhhcCCCcHHHHccC--CCEEECCCCcHH-HHHHHHHHhC
Confidence            456677777663221    121111122335566665554       59999997  678899999998 9999999999


Q ss_pred             CccceEEeCCCCceEEEEEccchHHHH
Q 011147          239 HSRVPIYVGTPTNIIGAILGHSHMAVV  265 (492)
Q Consensus       239 ~SRiPV~~~~~d~IvGiv~~~d~m~~v  265 (492)
                      ++++||++++ ++++|+|+.+|+++.+
T Consensus       103 ~~~lpVvd~~-g~lvGiit~~Dil~~~  128 (213)
T 1vr9_A          103 EPYLPVVDEE-MRLKGAVSLHDFLEAL  128 (213)
T ss_dssp             CSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             CCEEEEEcCC-CEEEEEEEHHHHHHHH
Confidence            9999999753 7899999976665444

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=97.37  E-value=0.00025  Score=62.72  Aligned_cols=62  Identities=11%  Similarity=0.041  Sum_probs=51.7

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhh
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCK  269 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l  269 (492)
                      .+.+|+++| .  ++.+++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+++.++..+
T Consensus        84 ~~~~v~~~m-~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~-~g~~vGivt~~dil~~l~~~~  145 (153)
T 3oco_A           84 DKAKISTIM-R--DIVSVPENMKVP-DVMEEMSAHRVPMAIVIDE-YGGTSGIITDKDVYEELFGNL  145 (153)
T ss_dssp             TTSBGGGTC-B--CCEEEETTSBHH-HHHHHHHHTTCSCEEEECT-TSCEEEEECHHHHHHHHHC--
T ss_pred             CCCcHHHHh-C--CCeEECCCCCHH-HHHHHHHHcCCcEEEEEeC-CCCEEEEeeHHHHHHHHhccC
Confidence            367899999 3  678999999998 9999999999999999974 478999999887777666544

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=97.36  E-value=0.00012  Score=65.72  Aligned_cols=61  Identities=20%  Similarity=0.227  Sum_probs=51.3

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      ...+.+|+++|++  ++.+++.++++. ++++.+.+++++++||+++  ++++|+|+.+|+++.+.
T Consensus        89 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A           89 ASLQQSVSVAMTK--NVVRCQHNSTTD-QLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             GGGTSBGGGTSBS--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTT
T ss_pred             ccccCCHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            3457899999985  677899999998 9999999999999999986  89999999666544443

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=97.35  E-value=0.00012  Score=63.65  Aligned_cols=63  Identities=14%  Similarity=0.281  Sum_probs=51.0

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHH
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVK  267 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk  267 (492)
                      ...+.+|+++|++  ++.+++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+++.+.+
T Consensus        81 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           81 KTNGKLVGDLMTP--APLVVEEKTNLE-DAAKILLETKYRRLPVVDS-DGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             ---CCBHHHHSEE--SCCCEESSSBHH-HHHHHHHHSSCCEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred             HhccccHHHhcCC--CceEECCCCcHH-HHHHHHHHCCCCEEEEECC-CCcEEEEEEHHHHHHHHHh
Confidence            3456789999997  567899999998 9999999999999999974 4789999997776655543

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=97.33  E-value=0.00027  Score=55.37  Aligned_cols=45  Identities=13%  Similarity=0.293  Sum_probs=39.6

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      +++++++++++. ++.+.+.+++++.+||.++  ++++|+++.+|+++
T Consensus         1 k~vtv~p~~tv~-ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~   45 (70)
T 3ghd_A            1 KAIVVQPKDTVD-RVAKILSRNKAGSAVVMEG--DEILGVVTERDILD   45 (70)
T ss_dssp             CEEEECTTCBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHH
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHH
Confidence            467899999998 9999999999999999975  78999999776543

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=97.29  E-value=0.00021  Score=61.69  Aligned_cols=63  Identities=13%  Similarity=0.154  Sum_probs=50.3

Q ss_pred             ccccccccccccCc----ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          202 MTQKTAKDAMTAMS----KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       202 l~~~~V~diMtPr~----~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      ..+.+++++|++..    ++.+++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+++.+.
T Consensus        74 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           74 DLSLSVGEALMRRSDDFEGVYTCTKNDKLS-TIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             -CCSBHHHHHHHCC------CEECTTSBHH-HHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             cCCccHHHHHhcCccccCCCeEECCCCcHH-HHHHHHHHCCCCEEEEECC-CCCEEEEEEHHHHHHHHH
Confidence            44678999998653    678999999998 9999999999999999974 378999999776655443

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=97.29  E-value=0.00029  Score=62.80  Aligned_cols=63  Identities=10%  Similarity=0.174  Sum_probs=53.4

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhh
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCK  269 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l  269 (492)
                      ..+.+|+++|++  ++.+++.++++. ++++.+.+++.+++||+++  ++++|+|+.+|+++.+.+.+
T Consensus        75 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~lvGiit~~dil~~~~~~~  137 (160)
T 2o16_A           75 AFETPLFEVMHT--DVTSVAPQAGLK-ESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAINLL  137 (160)
T ss_dssp             -CCCBHHHHSCS--CEEEBCTTSBHH-HHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHHHHH
T ss_pred             hcccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHHHHh
Confidence            356789999986  788999999998 9999999999999999985  79999999877766655443

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=97.26  E-value=0.00026  Score=60.50  Aligned_cols=61  Identities=16%  Similarity=0.228  Sum_probs=51.0

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHh
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKC  268 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~  268 (492)
                      +.+++++|++  ++.+++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+++.+.+.
T Consensus        66 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~~  126 (133)
T 2ef7_A           66 ETKAEEFMTA--SLITIREDSPIT-GALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAIDDM  126 (133)
T ss_dssp             TCBGGGTSEE--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHH
T ss_pred             ccCHHHHcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHHHH
Confidence            5789999986  667899999998 9999999999999999974 37899999977765555443

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=97.26  E-value=0.00033  Score=60.07  Aligned_cols=59  Identities=15%  Similarity=0.120  Sum_probs=49.2

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      .+.+++++|.|   +.+++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+++.++
T Consensus        70 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~-~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           70 GQKQLGAVMRP---IQVVLNNTALP-KVFDQMMTHRLQLALVVDE-YGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             TTSBHHHHSEE---CCEEETTSCHH-HHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             CcCCHHHHhcC---CcCcCCCCcHH-HHHHHHHHcCCeEEEEEcC-CCCEEEEEEHHHHHHHHc
Confidence            36689999963   67899999998 9999999999999999974 478999999776655543

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=97.25  E-value=0.00018  Score=64.69  Aligned_cols=65  Identities=17%  Similarity=0.276  Sum_probs=54.4

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhh
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCK  269 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l  269 (492)
                      ...+.+|+++|++  ++.+++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+++.+.+..
T Consensus        94 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~~~~~~~  158 (180)
T 3sl7_A           94 KTYGKVVGDLMTP--SPLVVRDSTNLE-DAARLLLETKFRRLPVVDA-DGKLIGILTRGNVVRAALQIK  158 (180)
T ss_dssp             TTTTCBHHHHSEE--SCCCEETTSBHH-HHHHHHTTSTTCEEEEECT-TCBEEEEEEHHHHHHHHHHHH
T ss_pred             ccccccHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHHHHh
Confidence            3457889999986  557799999998 9999999999999999974 478999999888777666543

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=97.24  E-value=0.00055  Score=59.85  Aligned_cols=62  Identities=11%  Similarity=0.163  Sum_probs=51.2

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhh
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCK  269 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l  269 (492)
                      ..+.+|+++|++  ++.+++.++++. ++++.+.++++  +||+++ .++++|+|+.+|+++.+.+..
T Consensus        84 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~--l~Vvd~-~g~~~Giit~~dil~~l~~~~  145 (150)
T 3lqn_A           84 LEEMKVEQVMKQ--DIPVLKLEDSFA-KALEMTIDHPF--ICAVNE-DGYFEGILTRRAILKLLNKKV  145 (150)
T ss_dssp             GGGCBGGGTCBS--SCCEEETTCBHH-HHHHHHHHCSE--EEEECT-TCBEEEEEEHHHHHHHHHHHC
T ss_pred             HhcCCHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCE--EEEECC-CCcEEEEEEHHHHHHHHHHHh
Confidence            457889999985  678899999998 99999999887  999974 478999999877766665544

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=97.22  E-value=0.00031  Score=60.52  Aligned_cols=59  Identities=14%  Similarity=0.088  Sum_probs=49.0

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      ...+++++|.   ++.+++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+++.++
T Consensus        68 ~~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           68 TKEIMLRAAD---EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             CHHHHHHHSB---CCCEEETTCBHH-HHHHHHHHHCCCEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             chhhHHHhcc---CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEcC-CCCEEEEeeHHHHHHHHh
Confidence            4567899994   467899999998 9999999999999999974 378999999777665554

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=97.22  E-value=0.0003  Score=60.08  Aligned_cols=57  Identities=11%  Similarity=0.092  Sum_probs=48.1

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHH
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVV  265 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~v  265 (492)
                      .+++++|++  ++.+++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+++.+
T Consensus        68 ~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~-~g~~~Giit~~dll~~l  124 (128)
T 3gby_A           68 EKLGEELLE--TVRSYRPGEQLF-DNLISVAAAKCSVVPLADE-DGRYEGVVSRKRILGFL  124 (128)
T ss_dssp             CBCCGGGCB--CCCCBCTTSBGG-GSHHHHHHCSSSEEEEECT-TCBEEEEEEHHHHHHHH
T ss_pred             CcHHHHccC--CCcEECCCCCHH-HHHHHHHhCCCcEEEEECC-CCCEEEEEEHHHHHHHH
Confidence            679999985  667899999998 9999999999999999974 47899999976655444

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=97.21  E-value=9.6e-05  Score=63.31  Aligned_cols=55  Identities=16%  Similarity=0.324  Sum_probs=47.9

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      ..+.+++++|++  ++.+++.++++. ++++.+.+++++++||+++  ++++|+|+.+|+
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~di  125 (133)
T 1y5h_A           71 PNTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVTEADI  125 (133)
T ss_dssp             TTTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHH
T ss_pred             ccccCHHHHhcC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHH
Confidence            356789999986  677899999998 9999999999999999986  799999995543

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=97.19  E-value=0.00026  Score=60.50  Aligned_cols=57  Identities=7%  Similarity=0.042  Sum_probs=47.5

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAV  264 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~  264 (492)
                      .+.+++++|.|   +.+++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+++.
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~g~~~Giit~~dll~~  123 (127)
T 3nqr_A           67 EAFSMDKVLRT---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILEL  123 (127)
T ss_dssp             CCCCHHHHCBC---CCEEETTCBHH-HHHHHHHHTTCCEEEEECT-TSCEEEEEEHHHHHHH
T ss_pred             CCCCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHH
Confidence            56789999965   46799999998 9999999999999999974 4789999996665443

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=97.08  E-value=0.00044  Score=63.11  Aligned_cols=57  Identities=12%  Similarity=0.174  Sum_probs=48.9

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      ..+.+++++|.+  ++.+++.++++. ++++.+.+++++++||+++ .++++|+|+..|++
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~g~~~Givt~~dll  128 (184)
T 1pvm_A           72 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLS  128 (184)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHT
T ss_pred             cccCCHHHHhCC--CCcEECCCCCHH-HHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHH
Confidence            567789999986  678899999998 9999999999999999975 37899999955543

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=97.08  E-value=0.00032  Score=60.29  Aligned_cols=60  Identities=13%  Similarity=0.276  Sum_probs=49.0

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcC-----CccceEEeCCCCceEEEEEccchHHHH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNG-----HSRVPIYVGTPTNIIGAILGHSHMAVV  265 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~-----~SRiPV~~~~~d~IvGiv~~~d~m~~v  265 (492)
                      ..+.+++++|++  ++.+++.++++. ++++.+.+++     ++++||+++ .++++|+|+.+|+++.+
T Consensus        70 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~  134 (138)
T 2p9m_A           70 TLETTIGDVMTK--DVITIHEDASIL-EAIKKMDISGKKEEIINQLPVVDK-NNKLVGIISDGDIIRTI  134 (138)
T ss_dssp             CSSCBHHHHSCS--SCCCEETTSBHH-HHHHHHTCC-----CCCEEEEECT-TSBEEEEEEHHHHHHHH
T ss_pred             cCCcCHHHHhCC--CcEEECCCCCHH-HHHHHHHhcCCccccccEEEEECC-CCeEEEEEEHHHHHHHH
Confidence            356789999986  667899999998 9999999999     999999974 37899999976655444

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=97.01  E-value=0.0012  Score=57.88  Aligned_cols=62  Identities=18%  Similarity=0.228  Sum_probs=51.2

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhh
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCK  269 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l  269 (492)
                      ..+.+++++|++  ++.+++.++++. ++++.+.++++  +||+++ .++++|+|+.+|+++.+.+..
T Consensus        80 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~--l~Vvd~-~g~~~Giit~~dil~~~~~~~  141 (157)
T 2emq_A           80 LETMKVEEVMNR--NIPRLRLDDSLM-KAVGLIVNHPF--VCVEND-DGYFAGIFTRREVLKQLNKQL  141 (157)
T ss_dssp             GGTCBGGGTCBC--CCCEEETTSBHH-HHHHHHHHSSE--EEEECS-SSSEEEEEEHHHHHHHHHHTT
T ss_pred             hcCCcHHHHhCC--CCceecCCCcHH-HHHHHHhhCCE--EEEEcC-CCeEEEEEEHHHHHHHHHHHh
Confidence            457889999986  678899999998 99999999987  999974 378999999777766555443

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=96.96  E-value=0.00088  Score=60.44  Aligned_cols=62  Identities=6%  Similarity=0.125  Sum_probs=52.7

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHh
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKC  268 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~  268 (492)
                      ..+.+|+++|++  ++.+++.++++. ++++.+.+++++++||++  .++++|+|+.+|+++.+.+.
T Consensus       105 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vvd--~g~~vGiit~~dll~~l~~~  166 (185)
T 2j9l_A          105 PPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIAQM  166 (185)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHHH
T ss_pred             ccCccHHHhhCc--CCeEeCCCCCHH-HHHHHHHhCCCcEEEEEE--CCEEEEEEEHHHHHHHHHHh
Confidence            456789999986  678899999998 999999999999999998  37899999987776665544

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=96.95  E-value=0.0012  Score=56.67  Aligned_cols=61  Identities=10%  Similarity=0.177  Sum_probs=50.5

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVK  267 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk  267 (492)
                      ..+.+++++|++  ++.+++.++++. ++++.+.+++++++ |+++ .++++|+|+.+|+++.+.+
T Consensus        69 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l-Vvd~-~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           69 PYDIPVERIMTR--NLITANVNTPLG-EVLRKMAEHRIKHI-LIEE-EGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             CTTSBGGGTCBC--SCCEEETTSBHH-HHHHHHHHHTCSEE-EEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             cccCCHHHHhhC--CCeEECCCCcHH-HHHHHHHhcCCCEE-EECC-CCCEEEEEEHHHHHHHHHH
Confidence            356789999986  678899999998 99999999999999 9974 3789999997766555443

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=96.93  E-value=0.00055  Score=60.07  Aligned_cols=55  Identities=20%  Similarity=0.255  Sum_probs=47.5

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      +..+.+|+++|++  ++.+++.++++. ++++.+.+++++++||++++  +++|+|+.+|
T Consensus        91 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~--~~~Giit~~d  145 (149)
T 3k2v_A           91 DMRDASIADVMTR--GGIRIRPGTLAV-DALNLMQSRHITCVLVADGD--HLLGVVHMHD  145 (149)
T ss_dssp             CCTTCBHHHHSEE--SCCEECTTCBHH-HHHHHHHHHTCSEEEEEETT--EEEEEEEHHH
T ss_pred             CcccCcHHHHcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEecCC--EEEEEEEHHH
Confidence            3467899999986  567899999998 99999999999999999863  9999999544

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=96.92  E-value=0.00047  Score=61.81  Aligned_cols=63  Identities=10%  Similarity=0.140  Sum_probs=51.3

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhc
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKN  270 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~  270 (492)
                      +.+.+|+++|++  ++.+++.++++. ++++.+.++++  +||+++ .++++|+|+.+|+++.+.+.+.
T Consensus        83 ~~~~~v~~im~~--~~~~v~~~~~l~-~~~~~m~~~~~--lpVVd~-~g~l~GiiT~~Dil~~~~~~~~  145 (156)
T 3k6e_A           83 MADTDIVHMTKT--DVAVVSPDFTIT-EVLHKLVDESF--LPVVDA-EGIFQGIITRKSILKAVNALLH  145 (156)
T ss_dssp             HTTSBGGGTCBC--SCCCBCTTCCHH-HHHHHTTTSSE--EEEECT-TSBEEEEEEHHHHHHHHHHHSC
T ss_pred             ccccCHHHhhcC--CceecccccHHH-HHHHHHHHcCC--eEEEec-CCEEEEEEEHHHHHHHHHHHhc
Confidence            357789999985  678899999998 99999987665  999975 4789999998888777765543

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=96.91  E-value=0.00077  Score=59.67  Aligned_cols=62  Identities=24%  Similarity=0.288  Sum_probs=51.3

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhh
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCK  269 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l  269 (492)
                      ..+.+|+++|.+  ++.+++.++++. ++++.+.++++  +||+++ .++++|+|+.+|+++.+.+.+
T Consensus        83 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~--lpVvd~-~g~~vGiit~~dil~~~~~~~  144 (159)
T 1yav_A           83 LDQITVEEVMLT--DIPRLHINDPIM-KGFGMVINNGF--VCVEND-EQVFEGIFTRRVVLKELNKHI  144 (159)
T ss_dssp             TTTSBHHHHSBC--SCCEEETTSBHH-HHHHHTTTCSE--EEEECT-TCBEEEEEEHHHHHHHHHHHC
T ss_pred             hccCCHHHhcCC--CCceEcCCCCHH-HHHHHHHhCCE--EEEEeC-CCeEEEEEEHHHHHHHHHHHH
Confidence            567899999987  678899999998 99999988877  999974 378999999877766665544

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=96.90  E-value=0.00075  Score=58.41  Aligned_cols=55  Identities=11%  Similarity=0.070  Sum_probs=47.3

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      +.+++++|++  ++.+++.+ ++. ++++.+.+++.+++||+++ .++++|+|+.+|+++
T Consensus        70 ~~~v~~~m~~--~~~~v~~~-~l~-~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dll~  124 (141)
T 2rih_A           70 DGPAMPIANS--PITVLDTD-PVH-VAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCF  124 (141)
T ss_dssp             TSBSGGGCBC--CCEEETTS-BHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHS
T ss_pred             CCCHHHHcCC--CCeEEcCC-CHH-HHHHHHHHcCCeEEEEEcC-CCcEEEEEEHHHHHH
Confidence            6789999986  77899999 998 9999999999999999974 478999999665543

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=96.86  E-value=0.0011  Score=62.17  Aligned_cols=62  Identities=15%  Similarity=0.166  Sum_probs=51.6

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVK  267 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk  267 (492)
                      ..+.+|+++|++  ++++++.++++. ++++.+.+++...+||+++ .++++|+|+.+|++..+.+
T Consensus       113 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVD~-~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          113 EPHEPLISLLSE--DSRALTANTTLL-DAAEAIEHSREIELPVIDD-AGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             CTTSBGGGGCCS--SCCCEETTSCHH-HHHHHHHTSSCSEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred             CCcchHHHHhcC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHH
Confidence            356789999985  678899999998 9999999999999999974 4789999997766555543

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=96.80  E-value=0.0007  Score=60.14  Aligned_cols=53  Identities=8%  Similarity=-0.056  Sum_probs=45.8

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccc
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHS  260 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d  260 (492)
                      .+.+++++|+|   +.+++.++++. ++++.+.+++..++||+++ .++++|+|+.+|
T Consensus       101 ~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~-~g~~~Givt~~D  153 (156)
T 3oi8_A          101 EQFHLKSILRP---AVFVPEGKSLT-ALLKEFREQRNHMAIVIDE-YGGTSGLVTFED  153 (156)
T ss_dssp             GGCCHHHHCBC---CCEEETTSBHH-HHHHHHHHTTCCEEEEECT-TSSEEEEEEHHH
T ss_pred             CcccHHHHcCC---CEEECCCCCHH-HHHHHHHhcCCeEEEEECC-CCCEEEEEEHHH
Confidence            56789999975   67899999998 9999999999999999974 378999998444

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=96.51  E-value=0.0023  Score=58.24  Aligned_cols=61  Identities=7%  Similarity=-0.055  Sum_probs=49.6

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhh
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCK  269 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l  269 (492)
                      .+.+++ +|.   ++.+++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+++.++..+
T Consensus        99 ~~~~v~-~~~---~~~~v~~~~~l~-~al~~m~~~~~~~~~Vvde-~g~lvGiIT~~Dil~~l~~~i  159 (173)
T 3ocm_A           99 GRVRRN-RLR---DPIIVHESIGIL-RLMDTLKRSRGQLVLVADE-FGAIEGLVTPIDVFEAIAGEF  159 (173)
T ss_dssp             SSCCGG-GSB---CCCEECGGGCHH-HHHHHHHHSTTCCEEEECT-TCCEEEEECHHHHHHHHHCCC
T ss_pred             CcchhH-hcC---CCeEECCCCcHH-HHHHHHHHcCCeEEEEEeC-CCCEEEEEeHHHHHHHHhCcC
Confidence            456777 553   567899999998 9999999999999999974 478999999888777766544

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=96.48  E-value=0.0021  Score=56.56  Aligned_cols=64  Identities=9%  Similarity=0.053  Sum_probs=51.6

Q ss_pred             cccccccccccCc----ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhh
Q 011147          203 TQKTAKDAMTAMS----KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCK  269 (492)
Q Consensus       203 ~~~~V~diMtPr~----~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l  269 (492)
                      .+.+++++|.+..    .+.+++.++++. ++++.+.+++.+++||+++  ++++|+|+.+|+++.+.+..
T Consensus        82 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~--g~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A           82 HQQCLQDILARGCPTEPVTLTLFSETTLH-QAQNLFKLLNLQSLFVTSR--GRAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             CCCBHHHHHHTTCCCBCCCCCEETTCBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHHHHHH
T ss_pred             ccchhhhhhcccccccCCceEECCCCcHH-HHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHHhhh
Confidence            4567899997531    157899999998 9999999999999999983  78999999877766655443

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=96.48  E-value=0.0041  Score=48.47  Aligned_cols=38  Identities=16%  Similarity=0.352  Sum_probs=34.2

Q ss_pred             HHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          337 LHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       337 l~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      +.+|.+.|.+++.+ ++|+       ++|+++||||-.|++..++.
T Consensus        11 v~ea~~~M~~~~i~~~~V~-------d~~~lvGIvT~~Di~~~~~~   49 (70)
T 3ghd_A           11 VDRVAKILSRNKAGSAVVM-------EGDEILGVVTERDILDKVVA   49 (70)
T ss_dssp             HHHHHHHHHHTTCSEEEEE-------ETTEEEEEEEHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCCCEEEEE-------ECCEEEEEEEHHHHHHHHHh
Confidence            67889999999999 8888       47899999999999999876

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=96.31  E-value=0.0024  Score=62.48  Aligned_cols=59  Identities=10%  Similarity=0.256  Sum_probs=49.6

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVV  265 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~v  265 (492)
                      .+.+|+++|++  ++.+++.++++. ++++.+.+++...+||+++ .++++|+|+..|++..+
T Consensus       197 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~g~lvGivT~~Dil~~i  255 (278)
T 2yvy_A          197 PRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVL  255 (278)
T ss_dssp             TTCBSTTTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHC
T ss_pred             CCCcHHHHhCC--CCeEEeCCCCHH-HHHHHHHhcCCCEEEEEeC-CCeEEEEEEHHHHHHHH
Confidence            57789999975  678899999998 9999999999999999974 37899999966554433

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=96.20  E-value=0.0035  Score=61.84  Aligned_cols=61  Identities=11%  Similarity=0.209  Sum_probs=51.4

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVK  267 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk  267 (492)
                      .+.+|+++|++  ++.+++.++++. ++.+.+.+++..++||+++ .++++|+|+..|++..+.+
T Consensus       199 ~~~~v~~im~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~-~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          199 DDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             TTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             CCCcHHHHcCC--CCeeecCCCCHH-HHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHHH
Confidence            56789999985  678899999998 9999999999999999974 4789999997776655543

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=95.73  E-value=0.0017  Score=69.50  Aligned_cols=62  Identities=18%  Similarity=0.239  Sum_probs=0.0

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      .+.+|+|+|+|..++++++.++++. ++++.+.+++.+++||++++ ++++|+|+.+|+++.+.
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLS-EANKIIWEKKLNALPIIDDD-QHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEecHHHHhhh
Confidence            4568999999877789999999998 99999999999999999854 78999999777655444

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=95.65  E-value=0.0098  Score=63.06  Aligned_cols=61  Identities=10%  Similarity=0.236  Sum_probs=52.1

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVK  267 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk  267 (492)
                      .+.+++++|++  ++.+++.++++. ++.+.+.+++...+||+++ .++++|+|+.+|+++.+.+
T Consensus       217 ~~~~v~dim~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVDe-~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          217 PRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             TTSBGGGTSBS--SCCCEESSSBHH-HHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred             CCCcHHHHhCC--CCeEEeCCCcHH-HHHHHHHhcCCcEEEEEcC-CCEEEEEEehHhhHHHHHH
Confidence            57799999985  678899999998 9999999999999999975 4789999997776655543

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=95.52  E-value=0.009  Score=64.07  Aligned_cols=59  Identities=12%  Similarity=0.139  Sum_probs=50.6

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      -.+.+|+++|++ .++++++.+.++. ++++.+.+++..++||+++ .++++|+|+.+|+++
T Consensus       172 ~~~~~V~~vM~~-~~~vtv~~~~~l~-eal~~m~~~~i~~lpVVDe-~g~l~GiIT~~Dil~  230 (511)
T 3usb_A          172 DYSIKISDVMTK-EQLITAPVGTTLS-EAEKILQKYKIEKLPLVDN-NGVLQGLITIKDIEK  230 (511)
T ss_dssp             CSSSBHHHHCCC-CCCCCEETTCCHH-HHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHH
T ss_pred             cCCCcHHHhccc-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEeC-CCCEeeeccHHHHHH
Confidence            456789999997 6788999999998 9999999999999999975 478999999655443

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=95.47  E-value=0.011  Score=65.07  Aligned_cols=51  Identities=8%  Similarity=-0.037  Sum_probs=43.6

Q ss_pred             ccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          206 TAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       206 ~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +++|+|++  ++.+++.++++. |+.+.+.+++..++||.++  ++++|+|+.+|+
T Consensus       569 ~v~~iMt~--~pitV~~~~~l~-ea~~~M~~~~i~~lpVve~--G~lvGIVT~~Dl  619 (632)
T 3org_A          569 SLVVPCDV--SPIVVTSYSLVR-QLHFLFVMLMPSMIYVTER--GKLVGIVEREDV  619 (632)
T ss_dssp             --CCSCCC--CCCEEETTCBHH-HHHHHHHHTCCSEEEEEET--TEEEEEEEGGGT
T ss_pred             ccchhhcC--CCceecCCCcHH-HHHHHHHhcCCCEEEEEEC--CEEEEEEehhhH
Confidence            48999985  667899999998 9999999999999999943  789999997665

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=95.17  E-value=0.0034  Score=66.95  Aligned_cols=59  Identities=12%  Similarity=0.081  Sum_probs=0.0

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      .+.+|+|+|+|+.++++++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+++
T Consensus       145 ~~~~V~~vMtp~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~  203 (490)
T 4avf_A          145 AGDTVAAIMTPKDKLVTAREGTPLE-EMKAKLYENRIEKMLVVDE-NFYLRGLVTFRDIEK  203 (490)
T ss_dssp             -------------------------------------------------------------
T ss_pred             cCCcHHHHhccCCCCEEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHhhh
Confidence            4678999999877789999999998 9999999999999999974 478999999766543

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=95.07  E-value=0.0045  Score=65.80  Aligned_cols=62  Identities=21%  Similarity=0.304  Sum_probs=3.5

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      .+.+|+++|+++.++.+++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+++.+.
T Consensus       153 ~~~~v~~im~~~~~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          153 LSKKIKDLMTPREKLIVAPPDISLE-KAKEILHQHRIEKLPLVSK-DNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             ----------------------------------------------------------CHHHHT
T ss_pred             CCCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHhhhc
Confidence            4568999999877889999999998 9999999999999999975 478999999888766543

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=94.87  E-value=0.0049  Score=65.87  Aligned_cols=58  Identities=9%  Similarity=0.090  Sum_probs=43.0

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      .+.+++|+|+|+.++++++.+.++. ++++.+.+++..++||+|+ .++++|+|+.+|++
T Consensus       147 ~~~~v~diM~p~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe-~G~l~GiIT~~DIl  204 (496)
T 4fxs_A          147 LTKSVAAVMTPKERLATVKEGATGA-EVQEKMHKARVEKILVVND-EFQLKGMITAKDFH  204 (496)
T ss_dssp             TTSBGGGTSEEGGGCCEEECC-----CGGGTCC---CCCEEEECT-TSBCCEEECCC---
T ss_pred             CCCcHHHHhcCCCCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCCEEEeehHhHHH
Confidence            5678999999877789999999998 9999999999999999975 47899999977654

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=94.32  E-value=0.031  Score=59.83  Aligned_cols=72  Identities=14%  Similarity=0.137  Sum_probs=52.6

Q ss_pred             HHHHHhhcc---cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCC---CCceEEEEEccchHHHH
Q 011147          192 ETTIITGAL---DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGT---PTNIIGAILGHSHMAVV  265 (492)
Q Consensus       192 E~~iI~~vl---~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~---~d~IvGiv~~~d~m~~v  265 (492)
                      ++++++.+.   ...+.+|+++|++  ++.+++.++++. ++++.|.++++  .||++++   .++++|||+.+|+++.+
T Consensus       435 ~~Dll~~l~~~~~~~~~~V~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l  509 (527)
T 3pc3_A          435 QETLITQIVSMNRQQSDPAIKALNK--RVIRLNESEILG-KLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFI  509 (527)
T ss_dssp             HHHHHHHHHHHCCCTTSBGGGGEET--TCCEEETTSBHH-HHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHhccCcCCCcHHHHhcC--CCeEECCCCcHH-HHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHH
Confidence            445554443   3346789999985  778899999998 99998866554  6999864   46899999977765555


Q ss_pred             HHh
Q 011147          266 VKC  268 (492)
Q Consensus       266 vk~  268 (492)
                      .+.
T Consensus       510 ~~~  512 (527)
T 3pc3_A          510 AAG  512 (527)
T ss_dssp             HTC
T ss_pred             Hhc
Confidence            443

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=93.94  E-value=0.033  Score=54.07  Aligned_cols=52  Identities=19%  Similarity=0.161  Sum_probs=44.6

Q ss_pred             cccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHH
Q 011147          209 DAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVV  265 (492)
Q Consensus       209 diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~v  265 (492)
                      .+|.|  ..+++..++++. ++..++...|..++||.+.  +.+||||..+|+++++
T Consensus       193 ~~md~--sP~tv~~~tsL~-~v~~LF~~lglr~l~V~~~--GrLVGIVTrkDl~kai  244 (250)
T 2d4z_A          193 CRIDQ--SPFQLVEGTSLQ-KTHTLFSLLGLDRAYVTSM--GKLVGVVALAEIQAAI  244 (250)
T ss_dssp             SCEEC--CSCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             ccccC--CCeEECCCCcHH-HHHHHHHHhCCeEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            46886  668999999998 9999999999999999974  7999999977765544

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=93.93  E-value=0.054  Score=57.30  Aligned_cols=61  Identities=11%  Similarity=0.214  Sum_probs=50.7

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      .+.+++++|++ .++++++.++++. ++++.+.+++..++||+++ .++++|++..+|+++.+.
T Consensus       150 ~~~~v~~im~~-~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVd~-~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          150 YNAPISEHMTS-EHLVTAAVGTDLE-TAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             SSSBTTTSCCC-SCCCCEETTCCHH-HHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             CCCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHHHHHHh
Confidence            56789999985 2567899999998 9999999999999999975 478999999766554443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=93.45  E-value=0.013  Score=62.61  Aligned_cols=58  Identities=10%  Similarity=0.151  Sum_probs=38.6

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      .+.+++++|+++.++.+++.++++. ++++.+.+++..++||+++ .++++|+|..+|++
T Consensus       171 ~~~~v~~vm~~~~~~~tv~~~~~l~-ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll  228 (514)
T 1jcn_A          171 HTTLLSEVMTPRIELVVAPAGVTLK-EANEILQRSKKGKLPIVND-CDELVAIIARTDLK  228 (514)
T ss_dssp             ----------CCBCCCCEETTCCST-TTTTHHHHHTCSCCCEESS-SSCCC----CCCCS
T ss_pred             CCCCHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCCcccEECC-CCeEEEEEEHHHHH
Confidence            4568999999866888999999998 9999999999999999974 47899999977764

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=92.25  E-value=0.026  Score=60.54  Aligned_cols=55  Identities=15%  Similarity=0.244  Sum_probs=0.0

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      .+.+|+|+||+  ++++++.+.+++ |+.+++.+++..++||+++ .++++|+|..+|+
T Consensus       198 ~~~~V~evMT~--~lvt~~~~~~le-eA~~iL~~~kieklpVVd~-~g~LvGlIT~kDi  252 (556)
T 4af0_A          198 AETPIKSVMTT--EVVTGSSPITLE-KANSLLRETKKGKLPIVDS-NGHLVSLVARSDL  252 (556)
T ss_dssp             -----------------------------------------------------------
T ss_pred             cceEhhhhccc--ceEEecCCCCHH-HHHHHHHHccccceeEEcc-CCcEEEEEEechh
Confidence            35789999996  689999999998 9999999999999999975 4789999995554

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=90.44  E-value=0.05  Score=57.71  Aligned_cols=57  Identities=19%  Similarity=0.349  Sum_probs=0.0

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      .+.+++++|++  ++.+++.++++. ++++.+.+++..++||+++ .++++|+++.+|+++
T Consensus       148 ~~~~v~~im~~--~~~~v~~~~~l~-eal~~m~~~~~~~lpVVde-~g~lvGiiT~~Dil~  204 (486)
T 2cu0_A          148 EGKLVKELMTK--EVITVPESIEVE-EALKIMIENRIDRLPVVDE-RGKLVGLITMSDLVA  204 (486)
T ss_dssp             -------------------------------------------------------------
T ss_pred             CCCCHHHHccC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEec-CCeEEEEEEHHHHHH
Confidence            35689999986  678899999998 9999999999999999974 478999999666543

>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4

Probab=82.86  E-value=0.1  Score=44.58  Aligned_cols=31  Identities=16%  Similarity=0.115  Sum_probs=26.5

Q ss_pred             CCC---cccccc-cccCCCCCCCCCCCCCcccCCC
Q 011147          410 SPG---AAFVSR-LRRTPMDSPIPSHHDQTPVSSY  440 (492)
Q Consensus       410 ~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  440 (492)
                      +|.   +.|.|. ||.+..+|+||..||.+-+..|
T Consensus        58 l~~~~~~~~dTlgGlil~~lg~iP~~Gd~v~~~g~   92 (113)
T 3ded_A           58 LPGEAGGNIHTLAGVMLYQLGRVPSVTDRFEWNGF   92 (113)
T ss_dssp             CTTGGGTCCCBHHHHHHHHHCSSCCTTCEEEETTE
T ss_pred             CCcccCCCCccHHHHHHHHhCCCCCCCCEEEECCE
Confidence            554   678899 9999999999999999877655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	492
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	2e-04
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	0.002
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	0.002
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	0.002

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 16/204 (7%), Positives = 57/204 (27%), Gaps = 28/204 (13%)

Query: 187 ELTHDETTIITGALD-MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIY 245
           ++   +   +      +  +T+ D +    ++   D+     + ++ L+  N     P++
Sbjct: 1   DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLF-VKTSLSLLTLNNIVSAPLW 59

Query: 246 VGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGN 305
                   G +     + V+      S     + +        +                
Sbjct: 60  DSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREV------------- 106

Query: 306 VQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVDEE 365
               +  A       +     +        D  L + K   + + +   + E   +  E 
Sbjct: 107 --ERKIGAIPPETIYVHPMHSLM-------DACLAMSKSRARRIPLIDVDGE---TGSEM 154

Query: 366 VIGIITLEDVMEELLQEEILDETD 389
           ++ ++T   +++  +     +   
Sbjct: 155 IVSVLTQYRILKF-ISMNCKETAM 177

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 17/120 (14%), Positives = 42/120 (35%), Gaps = 7/120 (5%)

Query: 273 KEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMA 332
           K +      + P+  D N    +      +K   +             +  D+     M 
Sbjct: 26  KLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDV-----MV 80

Query: 333 KSADLHLCLKKWERQDVKISKEELESLPSVDEE--VIGIITLEDVMEELLQEEILDETDD 390
            +      L    R   ++  + + SL  ++++  + GIIT  D++  L    ++++  +
Sbjct: 81  TNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVMEKFKE 140

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 297 QRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEEL 356
              G   G +            +    ++ I+  M K           +     +S+  L
Sbjct: 41  DDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGL 100

Query: 357 ESLPSVDEE--VIGIITLEDVMEELLQEEILDETDDY 391
           E    VD+   V+GI+TL D+   L +  I D    +
Sbjct: 101 ERCAVVDDPGRVVGIVTLTDLSRYLSRASITDILLSH 137

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 19/181 (10%), Positives = 53/181 (29%), Gaps = 40/181 (22%)

Query: 202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH 261
           M      D +   SK+   D + ++ +     +++NG    P++     + +G +     
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQVKK-AFFALVTNGVRAAPLWDSKKQSFVGML----- 63

Query: 262 MAVVVKCKNDSKEIAEMEKSKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVI 321
                       +   +                            + E+          +
Sbjct: 64  ---------TITDFINILHRYYKSALVQIY---------------ELEEHKIETWREVYL 99

Query: 322 SSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVDEE---VIGIITLEDVMEE 378
                    ++ +A L   +         + + ++  LP +D E    + I+T + +++ 
Sbjct: 100 QDSFKPLVCISPNASLFDAVS-------SLIRNKIHRLPVIDPESGNTLYILTHKRILKF 152

Query: 379 L 379
           L
Sbjct: 153 L 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	492
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.58
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.56
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.52
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.49
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.45
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.39
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.39
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.36
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.34
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.32
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.32
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.32
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.31
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.31
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.29
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.26
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.26
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.26
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.24
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.24
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.23
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.22
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.2
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.16
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.13
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.04
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	97.63
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	97.61
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	97.58
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	97.51
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	97.48
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	97.48
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	97.41
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	97.37
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	97.36
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	97.35
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.3
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.29
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	97.28
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	97.26
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	97.25
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	97.22
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	97.2
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.06
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	97.01
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	97.0
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	96.95
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	96.73
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	96.53
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	96.06
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	96.01
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	95.99

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.58  E-value=1.8e-15  Score=131.59  Aligned_cols=130  Identities=12%  Similarity=0.138  Sum_probs=90.7

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccC
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKA  283 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~  283 (492)
                      +.+|+++|+|.+++.+++.+++++ ++++.+.++||+++||++++ ++++|+++.+|+++.+.+.....    .....+.
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~-~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~~~----~~~~~~~   74 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIE----FEKLDQI   74 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBC----GGGTTTS
T ss_pred             CCCHHHccccccceEEEcCCCCHH-HHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhcccccc----ccccccc
Confidence            578999999999999999999998 99999999999999999754 78999999766544433221110    0000111


Q ss_pred             CCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcceEEecccCCCCCC
Q 011147          284 PMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVKISKEELESLPSVD  363 (492)
Q Consensus       284 ~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~~lVv~~~~~pde~  363 (492)
                      +++++             +.++  +..+..++                    ++.++++.|.+++ .++|+      |++
T Consensus        75 ~v~~~-------------m~~~--~~~v~~~~--------------------~l~~~~~~~~~~~-~l~Vv------d~~  112 (132)
T d1yava3          75 TVEEV-------------MLTD--IPRLHIND--------------------PIMKGFGMVINNG-FVCVE------NDE  112 (132)
T ss_dssp             BHHHH-------------SBCS--CCEEETTS--------------------BHHHHHHHTTTCS-EEEEE------CTT
T ss_pred             ccccc-------------cccc--ccccccch--------------------hHHHHHHHHHhCC-EEEEE------ccC
Confidence            22221             1111  11122222                    3667788887643 28888      789


Q ss_pred             CcEEEEechhHHHHHHcc
Q 011147          364 EEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       364 g~vvGIITlEDViEeLlg  381 (492)
                      |+++||||.+||+++|..
T Consensus       113 ~~~~Givt~~dil~~l~~  130 (132)
T d1yava3         113 QVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             CBEEEEEEHHHHHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHHh
Confidence            999999999999999853

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.56  E-value=3.1e-15  Score=135.99  Aligned_cols=170  Identities=9%  Similarity=0.122  Sum_probs=115.0

Q ss_pred             ChhHHHHHhhcccc-cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHH
Q 011147          189 THDETTIITGALDM-TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVK  267 (492)
Q Consensus       189 ~~~E~~iI~~vl~l-~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk  267 (492)
                      .+.|+..++.+.+| .+.+++|+|++..++++++.+.++. ++++.+.+++++++||++++.++++|+++.+|+++.+.+
T Consensus         3 ~~~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~-~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~   81 (179)
T d2ooxe1           3 QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKY   81 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHH-HHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHh
Confidence            46788899999996 9999999999999999999999998 999999999999999999777889999998887766655


Q ss_pred             hhccchhhHHhhhccCCCcccc-cccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhH
Q 011147          268 CKNDSKEIAEMEKSKAPMQHDI-NINSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWER  346 (492)
Q Consensus       268 ~l~~~~~~~~~~~~~~~v~~v~-~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~  346 (492)
                      ..........    ........ ...+........+.++  .+.++.+.                    ++.+|+..|.+
T Consensus        82 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~i~v~~~~--------------------sl~~~~~~m~~  135 (179)
T d2ooxe1          82 YYQSSSFPEA----IAEIDKFRLLGLREVERKIGAIPPE--TIYVHPMH--------------------SLMDACLAMSK  135 (179)
T ss_dssp             HHHHCSCGGG----GGGGGGSBHHHHHHHHHHTTCSCSS--CCCBCTTS--------------------BHHHHHHHHHH
T ss_pred             ccccccchhh----hhhhhccchhhhcccceeeeecccC--ceEECCCC--------------------cHHHHHHHhhh
Confidence            4332110000    00000000 0000000011111111  11123332                    37788999999


Q ss_pred             cCcc-eEEecccCCCCCCCcEEEEechhHHHHHHccCccCCc
Q 011147          347 QDVK-ISKEELESLPSVDEEVIGIITLEDVMEELLQEEILDE  387 (492)
Q Consensus       347 ~~~~-~lVv~~~~~pde~g~vvGIITlEDViEeLlgeeI~DE  387 (492)
                      ++.| ++|++.+..+ +++.++||||..||++.|.. .+.++
T Consensus       136 ~~~~~lpVvd~~g~~-~~~~vvgiiT~~dIlk~l~~-~~~~~  175 (179)
T d2ooxe1         136 SRARRIPLIDVDGET-GSEMIVSVLTQYRILKFISM-NCKET  175 (179)
T ss_dssp             TTCSEEEEEEECTTT-CCEEEEEEEEHHHHHHHHHT-TCGGG
T ss_pred             cCceEEEEEecCCCc-CCCcEEEEEeHHHHHHHHHH-hhhHh
Confidence            9999 9999422221 23479999999999999986 66554

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=3.7e-14  Score=126.23  Aligned_cols=142  Identities=11%  Similarity=0.130  Sum_probs=97.4

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS  281 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~  281 (492)
                      |..++++|+|++..++++++.++++. ++++.+.+++++++||++++.++++|++..+|++..+.+.....         
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~-eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~---------   79 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSA---------   79 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHH---------
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHH-HHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccc---------
Confidence            56889999999999999999999998 99999999999999999877788999999776655544432211         


Q ss_pred             cCCCcccccccchhhh--hhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccC
Q 011147          282 KAPMQHDININSNLKQ--RQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELES  358 (492)
Q Consensus       282 ~~~v~~v~~~~~~~~~--~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~  358 (492)
                      ....... ........  ...... ...++.++++                    .++.+|++.|.+.+.| ++|++   
T Consensus        80 ~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~v~~~--------------------~~l~~v~~~m~~~~~~~v~Vvd---  134 (159)
T d2v8qe2          80 LVQIYEL-EEHKIETWREVYLQDS-FKPLVCISPN--------------------ASLFDAVSSLIRNKIHRLPVID---  134 (159)
T ss_dssp             TTTCCCG-GGCBHHHHHHHHSSSS-CCCCCCBCTT--------------------SBHHHHHHHHHHHTCSCEEEEC---
T ss_pred             cchhhhh-hhhhcccccceeeeee-ccceEEECCC--------------------CcHHHHHHHHHHhCCeEEEEEE---
Confidence            0011111 01000000  000010 0011112222                    2367889999999999 99993   


Q ss_pred             CCCCCCcEEEEechhHHHHHHc
Q 011147          359 LPSVDEEVIGIITLEDVMEELL  380 (492)
Q Consensus       359 ~pde~g~vvGIITlEDViEeLl  380 (492)
                        +++|+++||||..||+|-|.
T Consensus       135 --~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2         135 --PESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             --TTTCCEEEEECHHHHHHHHH
T ss_pred             --CCCCeEEEEEeHHHHHHHHH
Confidence              26799999999999999885

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.49  E-value=1.5e-14  Score=126.23  Aligned_cols=135  Identities=16%  Similarity=0.220  Sum_probs=94.6

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      .+|+++|++  ++++++.++++. ++++.+.+++++++||+++ .++++|++...|+.+.+...........   ..+.+
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~-~a~~~m~~~~~~~ipVv~~-~~~~~g~i~~~di~~~~~~~~~~~~~~~---~~~~~   74 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLAKAVDKLDPDY---FYGKV   74 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHHHHTCTHH---HHTCB
T ss_pred             EeeHHhCcC--CCeEEcCcCcHH-HHHHHHHHcCCCeeecccc-cCccccccccccchhhhhcccccccccc---ccCCC
Confidence            368999998  688999999998 9999999999999999975 4789999997766555443322110000   01122


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      ++++             +.++.  ..+..+                    .++.++++.|.+.+.+ ++|+      |++
T Consensus        75 v~~i-------------m~~~~--~~v~~~--------------------~~~~~~~~~m~~~~~~~l~Vv------d~~  113 (141)
T d3ddja1          75 VKDV-------------MVTNL--VTIDEL--------------------ASVNRAAAEMIVKRIGSLLIL------NKD  113 (141)
T ss_dssp             HHHH-------------SBCCC--CBCCTT--------------------SBHHHHHHHHHHHTCSEEEEE------CTT
T ss_pred             HHHH-------------hCccc--cccccc--------------------chhhHHHHHHHHcCCCEEEEE------ccC
Confidence            2222             11111  111221                    2366789999999999 9999      799


Q ss_pred             CcEEEEechhHHHHHHccCccCCc
Q 011147          364 EEVIGIITLEDVMEELLQEEILDE  387 (492)
Q Consensus       364 g~vvGIITlEDViEeLlgeeI~DE  387 (492)
                      |+++|+||..||+++|.+..+.+|
T Consensus       114 ~~~iGiIt~~Dil~~l~~~~~~~~  137 (141)
T d3ddja1         114 NTIRGIITERDLLIALHHILVMEK  137 (141)
T ss_dssp             SCEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHhhhh
Confidence            999999999999999998444433

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.45  E-value=2.4e-13  Score=117.08  Aligned_cols=123  Identities=13%  Similarity=0.218  Sum_probs=92.6

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS  281 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~  281 (492)
                      |++.+|+|+|++  +++++++++++. ++.+.+.+++++++||+++  ++++|++..+|+.+.+.+...          .
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~-~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~----------~   65 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKS----------L   65 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCC----------T
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHH-HHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhcc----------c
Confidence            568899999985  889999999998 9999999999999999975  689999996665444332211          1


Q ss_pred             cCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCC
Q 011147          282 KAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLP  360 (492)
Q Consensus       282 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~p  360 (492)
                      +.++.++             +.+  .+..++.+                    .++.++++.|.+.+.+ ++|+      
T Consensus        66 ~~~v~~~-------------~~~--~~~~v~~~--------------------~~l~~~~~~m~~~~~~~l~Vv------  104 (127)
T d2ef7a1          66 ETKAEEF-------------MTA--SLITIRED--------------------SPITGALALMRQFNIRHLPVV------  104 (127)
T ss_dssp             TCBGGGT-------------SEE--CCCCEETT--------------------SBHHHHHHHHHHHTCSEEEEE------
T ss_pred             cchhhhh-------------hhh--hccccccc--------------------cchhHHHHHHHHcCceEEEEE------
Confidence            2233332             111  11112322                    2477889999999998 9999      


Q ss_pred             CCCCcEEEEechhHHHHHHc
Q 011147          361 SVDEEVIGIITLEDVMEELL  380 (492)
Q Consensus       361 de~g~vvGIITlEDViEeLl  380 (492)
                      |++|+++|+||..|+++.|-
T Consensus       105 d~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1         105 DDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             CTTSCEEEEEEHHHHHHHHH
T ss_pred             eCCCeEEEEEEHHHHHHHHH
Confidence            78999999999999999885

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.39  E-value=3.6e-13  Score=116.10  Aligned_cols=123  Identities=11%  Similarity=0.213  Sum_probs=88.6

Q ss_pred             cccccccccC-cceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccC
Q 011147          205 KTAKDAMTAM-SKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKA  283 (492)
Q Consensus       205 ~~V~diMtPr-~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~  283 (492)
                      ++|+|+|+.+ .+++++++++++. ++++.+.+++++++||+++  ++++|+++.+|+++.+...    ....    .+.
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~-~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~----~~~~----~~~   70 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLL----DKPV----KDT   70 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGS----SSCG----GGS
T ss_pred             ccHHHHHccCCCccEEECCcCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhh----cccc----cce
Confidence            4799999865 4799999999998 9999999999999999974  7899999977654332211    0010    122


Q ss_pred             CCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCC
Q 011147          284 PMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSV  362 (492)
Q Consensus       284 ~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde  362 (492)
                      +++++             +.+..  ..+..+                    .++.++++.|.+.+.+ ++|+      | 
T Consensus        71 ~v~~i-------------m~~~~--~~v~~~--------------------~~l~~a~~~m~~~~~~~lpVv------d-  108 (127)
T d2rc3a1          71 QVKEI-------------MTRQV--AYVDLN--------------------NTNEDCMALITEMRVRHLPVL------D-  108 (127)
T ss_dssp             BGGGT-------------SBCSC--CCBCTT--------------------CBHHHHHHHHHHHTCSEEEEE------E-
T ss_pred             eEeee-------------cccee--EEeccC--------------------ccHHHHHHHHHHCCCcEEEEE------E-
Confidence            33332             11111  111222                    2377889999999998 9999      4 


Q ss_pred             CCcEEEEechhHHHHHHc
Q 011147          363 DEEVIGIITLEDVMEELL  380 (492)
Q Consensus       363 ~g~vvGIITlEDViEeLl  380 (492)
                      +|+++|+||..|++++++
T Consensus       109 ~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1         109 DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             TTEEEEEEEHHHHHHHHH
T ss_pred             CCEEEEEEEHHHHHHHHh
Confidence            699999999999999986

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.39  E-value=5.2e-13  Score=118.51  Aligned_cols=133  Identities=10%  Similarity=0.140  Sum_probs=91.8

Q ss_pred             cccccccc-CcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          206 TAKDAMTA-MSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       206 ~V~diMtP-r~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      .++++|.+ ++++++++.+.++. ++++.+.+++++++||+++ .++++|+++.+|+++.+......        ..+.+
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~-~a~~~m~~~~~~~lpVvd~-~~~~vG~it~~Dl~~~~~~~~~~--------~~~~~   71 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVY-DVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDGDYS--------NLDLS   71 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHH-HHHHHHHHTTCSEEEEECG-GGBEEEEEEHHHHHHHHGGGCGG--------GGGSB
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHH-HHHHHHHHcCcceEeeecc-cceEEEEEEeeeeeehhcccccc--------ccccc
Confidence            46788876 67999999999998 9999999999999999975 37899999966654333222110        01112


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      +.+++...+        .. ....+.++.+                    .++.++++.|.+++.+ ++|+      |++
T Consensus        72 v~~~~~~~~--------~~-~~~~~~v~~~--------------------~~l~~~~~~m~~~~~~~l~Vv------d~~  116 (153)
T d2ooxe2          72 VGEALLKRP--------AN-FDGVHTCRAT--------------------DRLDGIFDAIKHSRVHRLFVV------DEN  116 (153)
T ss_dssp             HHHHHHTSC--------CC-SSCCCEECTT--------------------CBHHHHHHHHHHSCCSEEEEE------CTT
T ss_pred             hhhheeeee--------cc-cCCCeEECCC--------------------CcHHHHHHhhhhceeeEEEEE------cCC
Confidence            222210000        00 0001111222                    2477889999999999 9999      899


Q ss_pred             CcEEEEechhHHHHHHccCc
Q 011147          364 EEVIGIITLEDVMEELLQEE  383 (492)
Q Consensus       364 g~vvGIITlEDViEeLlgee  383 (492)
                      |+++||||+.|+++.+++++
T Consensus       117 ~~lvGivT~~Dil~~~~~~~  136 (153)
T d2ooxe2         117 LKLEGILSLADILNYIIYDK  136 (153)
T ss_dssp             CBEEEEEEHHHHHHHHHSCT
T ss_pred             CEEEEEEEHHHHHHHHHcCc
Confidence            99999999999999998743

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.36  E-value=2.8e-12  Score=113.19  Aligned_cols=147  Identities=10%  Similarity=0.120  Sum_probs=92.1

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCC-CCceEEEEEccchHHHHHHhhccchhhHHhh
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGT-PTNIIGAILGHSHMAVVVKCKNDSKEIAEME  279 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~-~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~  279 (492)
                      .-.+.+|+|||++  ++.+++.++++. ++++.+.+++|+.+||++++ .+.++|++...|+...+.+.....       
T Consensus         7 ~~~~~~V~diM~~--~~~~v~~~~tv~-e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~-------   76 (160)
T d2d4za3           7 NKYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAY-------   76 (160)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTT-------
T ss_pred             CccceEHHHhcCC--CCeEECCCCcHH-HHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccc-------
Confidence            3457899999995  889999999998 99999999999999999753 357999999666555444332111       


Q ss_pred             hccCCCcccccccchhhhhhccccc--c--ccccc-cCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEE
Q 011147          280 KSKAPMQHDININSNLKQRQGELKG--N--VQNEQ-FNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISK  353 (492)
Q Consensus       280 ~~~~~v~~v~~~~~~~~~~~~~~~~--~--~~~~~-vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lV  353 (492)
                       ........................  .  ..... .|.+..                ...++.++++.|.+.+.+ ++|
T Consensus        77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~----------------~~~~l~~~~~~m~~~~v~~l~V  139 (160)
T d2d4za3          77 -RRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLV----------------EGTSLQKTHTLFSLLGLDRAYV  139 (160)
T ss_dssp             -SSSCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBC----------------TTCBHHHHHHHHHHHTCSEEEE
T ss_pred             -cccchhhccccchhhhhhhhhcccccceeeecccCCCEEEc----------------CCCCHHHHHHHHHHcCCeEEEE
Confidence             000000000000000000000000  0  00000 011111                113577889999999999 888


Q ss_pred             ecccCCCCCCCcEEEEechhHHHHHHcc
Q 011147          354 EELESLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       354 v~~~~~pde~g~vvGIITlEDViEeLlg  381 (492)
                      +       ++|+++||||++||+++|.|
T Consensus       140 ~-------d~g~lvGiIt~~Di~k~I~g  160 (160)
T d2d4za3         140 T-------SMGKLVGVVALAEIQAAIEG  160 (160)
T ss_dssp             E-------ETTEEEEEEEHHHHHHHHHC
T ss_pred             E-------ECCEEEEEEEHHHHHHHhCC
Confidence            7       47999999999999999976

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=4.6e-12  Score=108.11  Aligned_cols=117  Identities=8%  Similarity=0.084  Sum_probs=88.6

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      ++|+++|++  ++.+++.++++. ++++++.+++++.+||+++ .++++|+++.+|++    +..           .+.+
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~-ea~~~m~~~~~~~v~Vvd~-~~~~~Gii~~~dl~----~~~-----------~~~~   61 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLL----DLD-----------LDSS   61 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGT----TSC-----------TTSB
T ss_pred             CCchhhhcC--CCeEECCCCCHH-HHHHhhhhcCcEEEEEEeC-CceeEEEeehhhhh----hhh-----------cccc
Confidence            468999995  778899999998 9999999999999999964 47899999966643    111           1223


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      +.++             +.++  +..++.+.                    ++.++++.|.+++.+ ++|+      |++
T Consensus        62 v~~~-------------~~~~--~~~v~~~~--------------------~l~~~~~~~~~~~~~~lpVv------de~  100 (121)
T d1vr9a3          62 VFNK-------------VSLP--DFFVHEED--------------------NITHALLLFLEHQEPYLPVV------DEE  100 (121)
T ss_dssp             SGGG-------------CBCT--TCCEETTS--------------------BHHHHHHHHHHCCCSEEEEE------CTT
T ss_pred             cccc-------------ccCc--cEEECCCC--------------------CHHHHHHHHHhcCceeeeeE------CCC
Confidence            3333             1111  11122222                    367789999999999 9999      899


Q ss_pred             CcEEEEechhHHHHHHcc
Q 011147          364 EEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       364 g~vvGIITlEDViEeLlg  381 (492)
                      |+++|+||.+|+++.+.+
T Consensus       101 g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3         101 MRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             CBEEEEEEHHHHHHHHHH
T ss_pred             CeEEEEEEHHHHHHHHHH
Confidence            999999999999999986

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.32  E-value=2e-12  Score=112.98  Aligned_cols=130  Identities=15%  Similarity=0.184  Sum_probs=90.3

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      .+|+|+|++  ++.+++.++++. ++++.+.+++++++||++++ ++++|+++.+|+++.......... ..+....+.+
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~-~~~~~~~~~~   76 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSA-QGDSLAFETP   76 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC----------CCCB
T ss_pred             EEHHHhCcC--CCeEECCcCCHH-HHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhhhhh-cccccccccc
Confidence            479999996  778999999998 99999999999999999754 789999997777655544332110 0000001112


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      +.++             +.++  +..+..+                    .++.+|++.|.+++.+ ++|+      | +
T Consensus        77 v~~i-------------m~~~--~~~v~~~--------------------~~l~~a~~~m~~~~~~~lpVv------d-~  114 (139)
T d2o16a3          77 LFEV-------------MHTD--VTSVAPQ--------------------AGLKESAIYMQKHKIGCLPVV------A-K  114 (139)
T ss_dssp             HHHH-------------SCSC--EEEBCTT--------------------SBHHHHHHHHHHTTCSCEEEE------E-T
T ss_pred             hhHh-------------hccc--ccccccc--------------------chHHHHHHHHHHcCceEEEEE------E-C
Confidence            2221             1111  1112222                    2467889999999999 9998      4 6


Q ss_pred             CcEEEEechhHHHHHHcc
Q 011147          364 EEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       364 g~vvGIITlEDViEeLlg  381 (492)
                      |+++|+||..||++.+..
T Consensus       115 ~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3         115 DVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             TEEEEEECHHHHHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHHH
Confidence            899999999999999864

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.32  E-value=2.8e-12  Score=109.30  Aligned_cols=119  Identities=13%  Similarity=0.258  Sum_probs=86.7

Q ss_pred             ccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCC
Q 011147          206 TAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPM  285 (492)
Q Consensus       206 ~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v  285 (492)
                      +|+|+|++  ++.+++.++++. |+++.+.+++++.+||.++  ++++|+++.+|+.+.+.+...         ..+.++
T Consensus         1 kV~diM~~--~~~~v~~~~sl~-ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~---------~~~~~v   66 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDD---------LAEVKV   66 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCC---------TTTSBH
T ss_pred             ChHHhCCC--CCeEECCcCcHH-HHHHHHHHcCceEEEEEeC--CcEEEEEEeeecccccccccc---------ccceeE
Confidence            48999995  888999999998 9999999999999999974  789999997766544433321         012233


Q ss_pred             cccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCC
Q 011147          286 QHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDE  364 (492)
Q Consensus       286 ~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g  364 (492)
                      .++             +.++.  ..+..+.                    ++.+|++.|++++.+ ++|+       ++|
T Consensus        67 ~~~-------------m~~~~--~~v~~~~--------------------~l~~a~~~m~~~~~~~l~V~-------~~~  104 (120)
T d1pbja3          67 WEV-------------MERDL--VTISPRA--------------------TIKEAAEKMVKNVVWRLLVE-------EDD  104 (120)
T ss_dssp             HHH-------------CBCGG--GEECTTS--------------------CHHHHHHHHHHHTCSEEEEE-------ETT
T ss_pred             eee-------------ccccc--ccccchh--------------------HHHHHHHHHHHcCCeEEEEE-------ECC
Confidence            332             11111  1123222                    377889999999999 7776       589


Q ss_pred             cEEEEechhHHHHHHc
Q 011147          365 EVIGIITLEDVMEELL  380 (492)
Q Consensus       365 ~vvGIITlEDViEeLl  380 (492)
                      +++|+||..|+++..+
T Consensus       105 ~l~Givt~~Dil~A~~  120 (120)
T d1pbja3         105 EIIGVISATDILRAKM  120 (120)
T ss_dssp             EEEEEEEHHHHHHHHC
T ss_pred             EEEEEEEHHHHHhcCC
Confidence            9999999999998753

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.32  E-value=1.2e-12  Score=115.12  Aligned_cols=129  Identities=13%  Similarity=0.174  Sum_probs=91.2

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      .+|+|+|++  ++.+++.++++. ++++.+.+++++++||+++ .++++|++..+|+++.+...-.    .+    ...+
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~~V~d~-~~~~~Giit~~di~~~~~~~~~----~~----~~~~   70 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPRNK----KP----DEVP   70 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHTGGGCC----CG----GGSB
T ss_pred             EEHHHhCCC--CCcEECCcCcHH-HHHHHHHHCCCceEeeecc-CCcccceEEeechhhhhhhhcc----cc----cccc
Confidence            479999986  788999999998 9999999999999999975 3799999986654332221110    11    1122


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      ++++             +.++...  +..+                    .++.+|++.|.+++.+ ++|+      |++
T Consensus        71 v~~i-------------m~~~~~~--v~~~--------------------~~l~~~~~~m~~~~~~~lpVv------d~~  109 (142)
T d1pvma4          71 IRLV-------------MRKPIPK--VKSD--------------------YDVKDVAAYLSENGLERCAVV------DDP  109 (142)
T ss_dssp             GGGT-------------SBSSCCE--EETT--------------------CBHHHHHHHHHHHTCSEEEEE------CTT
T ss_pred             cccc-------------ccccccc--ccch--------------------hhHHHHHHHHHHcCCcEEEEE------ecC
Confidence            3322             1111111  1222                    2377889999999998 9999      789


Q ss_pred             CcEEEEechhHHHHHHccCccCC
Q 011147          364 EEVIGIITLEDVMEELLQEEILD  386 (492)
Q Consensus       364 g~vvGIITlEDViEeLlgeeI~D  386 (492)
                      |+++|+||..||++.|...++.|
T Consensus       110 g~l~Giit~~Dil~~l~~~~~~d  132 (142)
T d1pvma4         110 GRVVGIVTLTDLSRYLSRASITD  132 (142)
T ss_dssp             CCEEEEEEHHHHTTTSCHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHhhhhhhh
Confidence            99999999999999886534433

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=4.2e-12  Score=110.75  Aligned_cols=133  Identities=11%  Similarity=0.123  Sum_probs=89.8

Q ss_pred             cccccccc-cccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147          203 TQKTAKDA-MTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS  281 (492)
Q Consensus       203 ~~~~V~di-MtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~  281 (492)
                      -.++++|+ +.+..++++++.++++. ++++.+.+++++++||+++ .++++|++..+|+++.+.......        .
T Consensus         4 ~~~~i~~l~~~~~~~v~tv~~~~~v~-~a~~~m~~~~~~~ipVvd~-~~~~vG~it~~Di~~~~~~~~~~~--------~   73 (140)
T d2nyca1           4 LKIPIGDLNIITQDNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIYND--------L   73 (140)
T ss_dssp             GGSBGGGSSCCBCSSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHTC------------C
T ss_pred             ccCcHHHhCCccCCCCEEEcCcCcHH-HHHHHHHHcCCcEEEEEec-CCeEcceehhhHHHHHHhhccccc--------c
Confidence            34677776 45668999999999998 9999999999999999975 468999999777654443221110        0


Q ss_pred             cCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCC
Q 011147          282 KAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLP  360 (492)
Q Consensus       282 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~p  360 (492)
                      .....+.      ... ....  ....+.++.+.                    ++.++++.|.+.+.+ ++|+      
T Consensus        74 ~~~~~~~------~~~-~~~~--~~~~~~v~~~~--------------------~l~~~~~~~~~~~~~~l~VV------  118 (140)
T d2nyca1          74 SLSVGEA------LMR-RSDD--FEGVYTCTKND--------------------KLSTIMDNIRKARVHRFFVV------  118 (140)
T ss_dssp             CSBHHHH------HHH-CC--------CEECTTS--------------------BHHHHHHHHHHHTCSEEEEE------
T ss_pred             ccchhhh------hhh-hhhc--ccccEEECCCC--------------------cHHHHHHHHHhcCeeEEEEE------
Confidence            0000000      000 0000  00111123222                    367889999999999 9999      


Q ss_pred             CCCCcEEEEechhHHHHHHc
Q 011147          361 SVDEEVIGIITLEDVMEELL  380 (492)
Q Consensus       361 de~g~vvGIITlEDViEeLl  380 (492)
                      |++|+++||||..||++.|+
T Consensus       119 d~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1         119 DDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             CTTSBEEEEEEHHHHHHHHH
T ss_pred             eCCCeEEEEEEHHHHHHHHh
Confidence            89999999999999999986

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.31  E-value=1.7e-12  Score=111.18  Aligned_cols=117  Identities=14%  Similarity=0.193  Sum_probs=75.3

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      ++|+|+|++  ++++++.++++. ++++.+.+++++++||+++ .++++|+|+.+|+++.    ..           +..
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~-~~~~~G~it~~dl~~~----~~-----------~~~   61 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVN----PD-----------EEQ   61 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECT-TCCEEEEEESSCC-----------------------
T ss_pred             CCcccccCC--CCEEECCcCcHH-HHHHHHHHcCCcEEEEEec-cccchhhhhcchhhhh----hc-----------ccc
Confidence            478999997  678899999998 9999999999999999975 4799999998776432    11           112


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      +.++             +.+..  ..++.+                    .++.++++.|.+++.+ ++|+      |++
T Consensus        62 ~~~~-------------~~~~~--~~v~~~--------------------~~l~~~~~~~~~~~~~~lpVv------d~~  100 (122)
T d2yzqa2          62 LAML-------------VKRDV--PVVKEN--------------------DTLKKAAKLMLEYDYRRVVVV------DSK  100 (122)
T ss_dssp             --CC-------------CBSCC--CEEETT--------------------SBHHHHHHHHHHHTCSEEEEE------CTT
T ss_pred             hhhc-------------cccce--eecchh--------------------hHHHHHHHHHHHcCcEEEEEE------eCC
Confidence            2222             11111  111222                    2367889999999998 9999      799


Q ss_pred             CcEEEEechhHHHHHHcc
Q 011147          364 EEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       364 g~vvGIITlEDViEeLlg  381 (492)
                      |+++|+||..||++.+++
T Consensus       101 ~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2         101 GKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             SCEEEEEEHHHHHHHTTT
T ss_pred             CEEEEEEEHHHHHHHHHh
Confidence            999999999999999987

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.29  E-value=3.5e-12  Score=112.78  Aligned_cols=142  Identities=10%  Similarity=0.091  Sum_probs=89.7

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhc
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKS  281 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~  281 (492)
                      +++.+|+++|..  +++++..++++. ++++.+.+++++++||+++ .++++|+++.+|++.........    ......
T Consensus         1 ~~~~~v~~~m~r--~v~~v~~~~~l~-~a~~~m~~~~~~~lPVvd~-~~~lvG~it~~Dl~~~~~~~~~~----~~~~~~   72 (156)
T d2yzqa1           1 YKGVEIEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDS-EGNLVGIVDETDLLRDSEIVRIM----KSTELA   72 (156)
T ss_dssp             GGGCBSTTTSBS--CCCCEETTSBHH-HHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGGGCGGGCC------------
T ss_pred             CCCCCHHHHhcC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEeC-CCCceeEEeeeechhhhcccccc----cccccc
Confidence            467899999984  789999999998 9999999999999999975 47899999977764322111110    000000


Q ss_pred             cCCCcccccccch------------hhhhhccc-cccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcC
Q 011147          282 KAPMQHDININSN------------LKQRQGEL-KGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQD  348 (492)
Q Consensus       282 ~~~v~~v~~~~~~------------~~~~~~~~-~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~  348 (492)
                      ....... .....            .......+ .+.  ++.+..                    ..++.++.+.|.+++
T Consensus        73 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~m~~~--~~tv~~--------------------~~~l~~~~~~m~~~~  129 (156)
T d2yzqa1          73 ASSEEEW-ILESHPTLLFEKFELQLPNKPVAEIMTRD--VIVATP--------------------HMTVHEVALKMAKYS  129 (156)
T ss_dssp             -------------------------CCCBGGGTCBSS--CCCBCT--------------------TSBHHHHHHHHHHHT
T ss_pred             cchhhhh-hhhhhhhhhHHHhhhcccCCEeehhcccC--ceEECc--------------------ccccHHHHHHHHHcC
Confidence            0000000 00000            00000011 000  010111                    234778899999999


Q ss_pred             cc-eEEecccCCCCCCCcEEEEechhHHHHHHc
Q 011147          349 VK-ISKEELESLPSVDEEVIGIITLEDVMEELL  380 (492)
Q Consensus       349 ~~-~lVv~~~~~pde~g~vvGIITlEDViEeLl  380 (492)
                      .+ ++|+      |++|+++||||.+||++.|+
T Consensus       130 ~~~lpVv------d~~g~lvGivt~~Dil~~l~  156 (156)
T d2yzqa1         130 IEQLPVI------RGEGDLIGLIRDFDLLKVLV  156 (156)
T ss_dssp             CSEEEEE------ETTTEEEEEEEHHHHGGGGC
T ss_pred             eeEEEEE------eCCCEEEEEEEHHHHHHHhC
Confidence            99 9999      78999999999999999875

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=1.1e-11  Score=108.49  Aligned_cols=135  Identities=10%  Similarity=0.193  Sum_probs=90.7

Q ss_pred             cccccccccccc-CcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhh
Q 011147          202 MTQKTAKDAMTA-MSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEK  280 (492)
Q Consensus       202 l~~~~V~diMtP-r~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~  280 (492)
                      |-.++++|++.+ ..+++++..++++. ++++.+.+++++++||+++ .+.++|+++..|+++.+......        .
T Consensus         6 f~~~~l~~l~i~~~~~v~~v~~~~tv~-eal~~m~~~~~~~lpVvd~-~~~~~Gvit~~di~~~l~~~~~~--------~   75 (145)
T d2v8qe1           6 FMSKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKTYN--------N   75 (145)
T ss_dssp             GGGSBHHHHTCSBCSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSSCCC--------C
T ss_pred             HhhCCHHHHcCCCCCCceEEcCcCcHH-HHHHHHHHcCCCccccccc-CCceEEEEEcchhhhhhhccccc--------c
Confidence            345678888765 35799999999998 9999999999999999974 46899999977654322211100        0


Q ss_pred             ccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCC
Q 011147          281 SKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESL  359 (492)
Q Consensus       281 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~  359 (492)
                      .+..+.+...       ....+...  ...+..+                    .++.++++.|.+++.+ ++|+     
T Consensus        76 ~~~~v~~~~~-------~~~~~~~~--~~~v~~~--------------------~~l~~~~~~m~~~~~~~l~Vv-----  121 (145)
T d2v8qe1          76 LDVSVTKALQ-------HRSHYFEG--VLKCYLH--------------------ETLEAIINRLVEAEVHRLVVV-----  121 (145)
T ss_dssp             CSSBHHHHGG-------GCCSCCCS--CCEECTT--------------------SBHHHHHHHHHHHTCSEEEEE-----
T ss_pred             hhhhhhhccc-------hhhhccCC--CeEECCC--------------------CcHHHHHHHHHHcCceEEEEE-----
Confidence            0111111100       00000000  0001111                    2477889999999999 9999     


Q ss_pred             CCCCCcEEEEechhHHHHHHcc
Q 011147          360 PSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       360 pde~g~vvGIITlEDViEeLlg  381 (492)
                       |++|+++|+||..|+++.|+.
T Consensus       122 -d~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1         122 -DEHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             -CTTSBEEEEEEHHHHHHHHHS
T ss_pred             -ccCCEEEEEEEHHHHHHHHHh
Confidence             799999999999999999985

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=6e-12  Score=107.57  Aligned_cols=121  Identities=18%  Similarity=0.224  Sum_probs=84.2

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      .+|+|+|++  ++++++.++++. ++++.+.+++++++||++++ +.++|+++.+|+    ++.........    ....
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di----~~~~~~~~~~~----~~~~   68 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDI----VIKGLAAGLDP----NTAT   68 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHH----HHTTGGGTCCT----TTSB
T ss_pred             CCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCCceEEEecc-chhhhhhhhhhH----hhhhhhcCCCc----ccce
Confidence            479999985  789999999998 99999999999999999753 689999996554    33221110000    0011


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      ++++             +..+.  ..+..+                    .++.+|++.|.+++.+ ++|+      | +
T Consensus        69 v~~i-------------m~~~~--~~v~~~--------------------~~~~~~~~~m~~~~~~~lpVv------d-~  106 (123)
T d1y5ha3          69 AGEL-------------ARDSI--YYVDAN--------------------ASIQEMLNVMEEHQVRRVPVI------S-E  106 (123)
T ss_dssp             HHHH-------------HTTCC--CCEETT--------------------CCHHHHHHHHHHHTCSEEEEE------E-T
T ss_pred             EEEE-------------eeccc--eeeeec--------------------chHHHHHHHHHHcCceEEEEE------E-C
Confidence            1111             11111  111222                    2377889999999999 9999      4 5


Q ss_pred             CcEEEEechhHHHHHH
Q 011147          364 EEVIGIITLEDVMEEL  379 (492)
Q Consensus       364 g~vvGIITlEDViEeL  379 (492)
                      |+++||||..||+++|
T Consensus       107 ~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3         107 HRLVGIVTEADIARHL  122 (123)
T ss_dssp             TEEEEEEEHHHHHHTC
T ss_pred             CEEEEEEEHHHHHhhC
Confidence            8999999999999875

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.26  E-value=3.1e-12  Score=110.58  Aligned_cols=129  Identities=15%  Similarity=0.147  Sum_probs=87.0

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhh-HHhhhccC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEI-AEMEKSKA  283 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~-~~~~~~~~  283 (492)
                      .+|+|+|++  ++.+++.++++. ++++.+.++|++++||++   ++.+|++..++.++.+.......... ......+.
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~l~V~d---~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred             CEeeEEeeC--CCeEECCCCcHH-HHHHHHHHhCCeEEEEEe---cceeceeeccchhhhhccccccchhhhhccccccC
Confidence            479999997  677899999998 999999999999999996   37999998665433322111100000 00001122


Q ss_pred             CCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCC
Q 011147          284 PMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSV  362 (492)
Q Consensus       284 ~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde  362 (492)
                      +++++             +.+..  ..++.+                    .++.+|++.|.+++.+ ++|+      |+
T Consensus        75 ~v~~i-------------m~~~~--~~v~~~--------------------~~l~~a~~~m~~~~i~~lpVv------d~  113 (135)
T d3ddja2          75 PIIDY-------------MTPNP--VTVYNT--------------------SDEFTAINIMVTRNFGSLPVV------DI  113 (135)
T ss_dssp             BGGGT-------------SEESC--CCEETT--------------------SCHHHHHHHHHHHTCSEEEEE------CT
T ss_pred             CHHHH-------------hCCcc--ceEEec--------------------cccchhhhhhhhcceeEEEEE------eC
Confidence            22222             11111  112222                    2367889999999999 9999      89


Q ss_pred             CCcEEEEechhHHHHHHc
Q 011147          363 DEEVIGIITLEDVMEELL  380 (492)
Q Consensus       363 ~g~vvGIITlEDViEeLl  380 (492)
                      +|+++||||..||++.+-
T Consensus       114 ~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2         114 NDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             TSCEEEEEEHHHHGGGGG
T ss_pred             CCEEEEEEEHHHHHHHHH
Confidence            999999999999998774

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.24  E-value=2e-11  Score=106.48  Aligned_cols=137  Identities=10%  Similarity=0.074  Sum_probs=89.3

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      +.+.++|+.  +.++++.++++. ++++.+.+++++++||++++ +.++|+|..+|+++.+...........     +..
T Consensus         4 ~~v~~~m~~--~p~~v~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~-----~~~   74 (145)
T d1o50a3           4 KDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKE-----ELI   74 (145)
T ss_dssp             HHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC----------
T ss_pred             eEhHHhCCC--CCEEECCcCcHH-HHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccchh-----HHH
Confidence            456778874  668999999998 99999999999999999754 789999997776544433221110000     000


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      ....   ..........+++.  ++.+..+                    .++.+|++.|.+.+.+ ++|+      |++
T Consensus        75 ~~~~---~~~~~~~~~~~~~~--~~~i~~~--------------------~~l~~a~~~m~~~~i~~lpVV------d~~  123 (145)
T d1o50a3          75 RSSM---KRLIAKNASEIMLD--PVYVHMD--------------------TPLEEALKLMIDNNIQEMPVV------DEK  123 (145)
T ss_dssp             --CC---CCCSSCBHHHHCBC--CCCBCTT--------------------SBHHHHHHHHHHHTCSEEEEE------CTT
T ss_pred             Hhhh---hhccccCHHHHcCC--CEEEcCC--------------------CCHHHHHHHHHHcCceEEEEE------eCC
Confidence            0000   00000011111111  1111222                    2477889999999999 9999      789


Q ss_pred             CcEEEEechhHHHHHHcc
Q 011147          364 EEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       364 g~vvGIITlEDViEeLlg  381 (492)
                      |+++|+||..||++.|..
T Consensus       124 g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3         124 GEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             SCEEEEEEHHHHHHHHHH
T ss_pred             CeEEEEEEHHHHHHHHHh
Confidence            999999999999999975

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.24  E-value=1.7e-11  Score=106.07  Aligned_cols=122  Identities=18%  Similarity=0.262  Sum_probs=87.5

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhhccCC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAP  284 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~  284 (492)
                      .+|+|+|+  .++.+++.++++. ++++.+.+++++++||.++ .++++|+++.+|+    ++.+.... .    ..+.+
T Consensus         5 ~pV~~im~--~~~~~v~~~~t~~-~a~~~m~~~~~~~~~Vvd~-~~~~~Giit~~di----~~~~~~~~-~----~~~~~   71 (132)
T d2yzia1           5 APIKVYMT--KKLLGVKPSTSVQ-EASRLMMEFDVGSLVVIND-DGNVVGFFTKSDI----IRRVIVPG-L----PYDIP   71 (132)
T ss_dssp             SBGGGTCB--CCCCEECTTSBHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHH----HHHTTTTC-C----CTTSB
T ss_pred             CcHHHHcC--CCCeEECCcCcHH-HHHHHHHHcCCcEEEEecc-cceeeeeeeHHHH----HHHHhhcc-C----cccee
Confidence            47999998  4889999999998 9999999999999999975 4789999996554    33332110 0    11233


Q ss_pred             CcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCC
Q 011147          285 MQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVD  363 (492)
Q Consensus       285 v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~  363 (492)
                      ++++             +.++...  +..+                    .++.++++.|.+++.+ ++|+       ++
T Consensus        72 v~~i-------------m~~~~~~--v~~~--------------------~~~~~~~~~m~~~~~~~l~V~-------~~  109 (132)
T d2yzia1          72 VERI-------------MTRNLIT--ANVN--------------------TPLGEVLRKMAEHRIKHILIE-------EE  109 (132)
T ss_dssp             GGGT-------------CBCSCCE--EETT--------------------SBHHHHHHHHHHHTCSEEEEE-------ET
T ss_pred             Eeec-------------ccccccc--cCcc--------------------hHHHHHHHHHHHcCCCEEEEE-------EC
Confidence            3333             1111111  1222                    2467889999999988 7665       68


Q ss_pred             CcEEEEechhHHHHHHcc
Q 011147          364 EEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       364 g~vvGIITlEDViEeLlg  381 (492)
                      |+++|+||..|+++.+..
T Consensus       110 ~~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1         110 GKIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             TEEEEEEEHHHHHHHHHC
T ss_pred             CEEEEEEEHHHHHHHHHH
Confidence            999999999999998865

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.23  E-value=1.6e-11  Score=105.45  Aligned_cols=120  Identities=10%  Similarity=0.153  Sum_probs=84.8

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCC-CCceEEEEEccchHHHHHHhhccchhhHHhhhccC
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGT-PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKA  283 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~-~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~  283 (492)
                      .+|+|+|+.  ++++++.++++. ++++.+.+++++++||++.+ .+.++|+++..|+.+.+.+...           ..
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~-ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~-----------~~   66 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD-----------LD   66 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC-----------TT
T ss_pred             CCHHHhccC--CCEEECCCCcHH-HHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccc-----------cc
Confidence            479999984  778999999998 99999999999999999643 3669999986554332222111           00


Q ss_pred             CCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCC
Q 011147          284 PMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSV  362 (492)
Q Consensus       284 ~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde  362 (492)
                      ....             .+.+..  ..+...                    .++.++++.|.+++.+ ++|+      |+
T Consensus        67 ~~~~-------------~~~~~~--~~v~~~--------------------~~~~~a~~~m~~~~i~~lpVv------d~  105 (131)
T d2riha1          67 GPAM-------------PIANSP--ITVLDT--------------------DPVHVAAEKMRRHNIRHVVVV------NK  105 (131)
T ss_dssp             SBSG-------------GGCBCC--CEEETT--------------------SBHHHHHHHHHHHTCSEEEEE------CT
T ss_pred             cccc-------------cccccc--eeEeee--------------------cchHHHHHHHHHCCeEEEEEE------cC
Confidence            0000             011111  111211                    1366789999999999 9999      89


Q ss_pred             CCcEEEEechhHHHHHH
Q 011147          363 DEEVIGIITLEDVMEEL  379 (492)
Q Consensus       363 ~g~vvGIITlEDViEeL  379 (492)
                      +|+++||||..|+++.+
T Consensus       106 ~g~l~Giit~~Dll~~~  122 (131)
T d2riha1         106 NGELVGVLSIRDLCFER  122 (131)
T ss_dssp             TSCEEEEEEHHHHHSCH
T ss_pred             CCeEEEEEEHHHHHHHH
Confidence            99999999999999864

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.1e-11  Score=111.51  Aligned_cols=148  Identities=11%  Similarity=0.160  Sum_probs=87.1

Q ss_pred             cccccccccCcce----EEEeCCCChHHHHHHHHHHcCCccceEEeC-CCCceEEEEEccchHHHHHHhhccchhhHHhh
Q 011147          205 KTAKDAMTAMSKI----FSLDINSRLDEKTMGLIISNGHSRVPIYVG-TPTNIIGAILGHSHMAVVVKCKNDSKEIAEME  279 (492)
Q Consensus       205 ~~V~diMtPr~~v----~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~-~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~  279 (492)
                      ..|+|+|+|+...    +.+..+.++. ++.+.+.+++|+++||+.+ +.+.++|+++.+|+++.+.+............
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~-~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~   81 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTS   81 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHH-HHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccch
Confidence            5789999997533    4566778998 9999999999999999953 34569999998877655543321110000000


Q ss_pred             hccCCCccc-ccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEeccc
Q 011147          280 KSKAPMQHD-ININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELE  357 (492)
Q Consensus       280 ~~~~~v~~v-~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~  357 (492)
                      ......... ..........++.++.. .++.++.+                    .++.++++.|.+.+.+ ++|+   
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~im~~-~~~tv~~~--------------------~~l~~v~~~~~~~~~~~l~V~---  137 (169)
T d2j9la1          82 IIYFTEHSPPLPPYTPPTLKLRNILDL-SPFTVTDL--------------------TPMEIVVDIFRKLGLRQCLVT---  137 (169)
T ss_dssp             EEECSSSCCCCCTTCCCCEECGGGEES-SCCEEETT--------------------SBHHHHHHHHHHHTCSEEEEE---
T ss_pred             hhhhcccchhhhhccccccchhhhccC-CCEEECCC--------------------CcHHHHHHHHHhcCceEEEEE---
Confidence            000000000 00000000001111100 01111222                    2467789999999999 7665   


Q ss_pred             CCCCCCCcEEEEechhHHHHHHcc
Q 011147          358 SLPSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       358 ~~pde~g~vvGIITlEDViEeLlg  381 (492)
                          ++|+++||||..||++.|.+
T Consensus       138 ----d~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1         138 ----HNGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             ----ETTEEEEEEEHHHHHHHHHH
T ss_pred             ----ECCEEEEEEEHHHHHHHHHH
Confidence                68999999999999999864

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.20  E-value=3.4e-11  Score=103.73  Aligned_cols=115  Identities=17%  Similarity=0.213  Sum_probs=84.8

Q ss_pred             ccccccccCcceEEEeCCCChHHHHHHHHHHcC-----CccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhh
Q 011147          206 TAKDAMTAMSKIFSLDINSRLDEKTMGLIISNG-----HSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEK  280 (492)
Q Consensus       206 ~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~-----~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~  280 (492)
                      +|+.+|++  ++++++.++++. ++++.+.+++     .+.+||+++ .++++|++.        ++++...       .
T Consensus         2 taG~iM~~--d~i~v~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~-~~~l~G~v~--------~~~l~~~-------~   62 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVIS--------LRDLIVN-------D   62 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEE--------HHHHTTS-------C
T ss_pred             ChhHhCCC--CcEEECCCCcHH-HHHHHhHhhcccccceeeeEEEec-CCeEEEEEE--------eeccccc-------c
Confidence            68899996  889999999998 9999998774     578999975 478999998        3443321       1


Q ss_pred             ccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCC
Q 011147          281 SKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESL  359 (492)
Q Consensus       281 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~  359 (492)
                      .+.++.++             |.+....  +..+                    .++.+|++.|.+++.+ ++|+     
T Consensus        63 ~~~~v~~i-------------m~~~~~~--v~~~--------------------~~l~~a~~~m~~~~~~~lPVV-----  102 (127)
T d2ouxa2          63 DDTLIADI-------------LNERVIS--VHVG--------------------DDQEDVAQTIRDYDFLAVPVT-----  102 (127)
T ss_dssp             TTSBHHHH-------------SBSCCCC--EETT--------------------SBHHHHHHHHHHHTCSEEEEE-----
T ss_pred             ccEEhhhh-------------ccCCCcc--CCCC--------------------CCHHHHHHHHHHhCCEEEEEE-----
Confidence            12334443             2222111  1222                    2377889999999999 9999     


Q ss_pred             CCCCCcEEEEechhHHHHHHc
Q 011147          360 PSVDEEVIGIITLEDVMEELL  380 (492)
Q Consensus       360 pde~g~vvGIITlEDViEeLl  380 (492)
                       |++|+++||||.+||++.+-
T Consensus       103 -D~~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2         103 -DYDDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             -CTTCBEEEEEEHHHHHHHHH
T ss_pred             -eCCCEEEEEEEHHHHHHHHH
Confidence             78999999999999998763

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.16  E-value=2e-11  Score=107.43  Aligned_cols=116  Identities=11%  Similarity=0.171  Sum_probs=84.4

Q ss_pred             ccccccccCcceEEEeCCCChHHHHHHHHHHcC-----CccceEEeCCCCceEEEEEccchHHHHHHhhccchhhHHhhh
Q 011147          206 TAKDAMTAMSKIFSLDINSRLDEKTMGLIISNG-----HSRVPIYVGTPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEK  280 (492)
Q Consensus       206 ~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~-----~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~  280 (492)
                      +|+.+|++  ++++++.++++. ++++.+.+++     .+.+||.++ .+.++|++..+|    +.+..           
T Consensus         2 taG~iM~~--~~itv~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~-~~~l~G~v~~~d----l~~~~-----------   62 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRD----LIVAD-----------   62 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHH-HHHHHSSSSCTTSSCSSBCEEBCT-TCBBCCBCBHHH----HTTSC-----------
T ss_pred             CcccccCC--CCEEECCCCcHH-HHHHHHHHhcccccceeeeEEecC-CCCEecccchhh----hhhcc-----------
Confidence            68999996  889999999998 9999998775     567899975 478999998333    22211           


Q ss_pred             ccCCCcccccccchhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCC
Q 011147          281 SKAPMQHDININSNLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESL  359 (492)
Q Consensus       281 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~  359 (492)
                      .+.++.++             +.++...  ++...                    ++.+|++.|.+++.+ ++||     
T Consensus        63 ~~~~v~~i-------------m~~~~~~--v~~~~--------------------~~~~a~~~m~~~~~~~lPVV-----  102 (144)
T d2yvxa2          63 PRTRVAEI-------------MNPKVVY--VRTDT--------------------DQEEVARLMADYDFTVLPVV-----  102 (144)
T ss_dssp             TTCBSTTT-------------SBSSCCC--EESSC--------------------CHHHHHHHHHHSCCSEEEEE-----
T ss_pred             cccchHHh-------------cccCCcc--CCCCC--------------------hHHHHHHHHHHcCCCEEEEE-----
Confidence            12233333             1111111  12221                    367789999999999 9999     


Q ss_pred             CCCCCcEEEEechhHHHHHHcc
Q 011147          360 PSVDEEVIGIITLEDVMEELLQ  381 (492)
Q Consensus       360 pde~g~vvGIITlEDViEeLlg  381 (492)
                       |++|+++||||..||++.+.+
T Consensus       103 -d~~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2         103 -DEEGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             -CSSCBEEEEEEHHHHHHHHHH
T ss_pred             -eECCEEEEEEEHHHHHHHHHH
Confidence             789999999999999997754

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.13  E-value=1.7e-10  Score=98.78  Aligned_cols=111  Identities=15%  Similarity=0.177  Sum_probs=79.2

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCC-CCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccch
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGT-PTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININSN  294 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~-~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~~  294 (492)
                      +.+++.+++++. ++++.+.+++++++||+++. .+.++|+|+.+|+    .+....          +....+.      
T Consensus         6 dpvtv~~~~tv~-~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di----~~~~~~----------~~~~~~~------   64 (126)
T d1zfja4           6 DPFFLTPEHKVS-EAEELMQRYRISGVPIVETLANRKLVGIITNRDM----RFISDY----------NAPISEH------   64 (126)
T ss_dssp             SCCCBCSSSBHH-HHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHH----HHCSCS----------SSBTTTS------
T ss_pred             CceEECCCCCHH-HHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHH----HHhhcc----------CCceeee------
Confidence            567899999998 99999999999999999753 4679999995553    332211          1111111      


Q ss_pred             hhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEechh
Q 011147          295 LKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITLE  373 (492)
Q Consensus       295 ~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITlE  373 (492)
                            .+.+  ....++..                    .++.+|++.|.+.+.+ ++|+      |++|+++||||+.
T Consensus        65 ------~~~~--~~~~~~~~--------------------~~l~~a~~~m~~~~~~~lpVV------d~~g~lvGiiT~~  110 (126)
T d1zfja4          65 ------MTSE--HLVTAAVG--------------------TDLETAERILHEHRIEKLPLV------DNSGRLSGLITIK  110 (126)
T ss_dssp             ------CCCS--CCCCEETT--------------------CCHHHHHHHHHHTTCSEEEEE------CTTSBEEEEEEHH
T ss_pred             ------eecc--ceeecCCC--------------------CCHHHHHHHHHhcCCcEEEEE------cCCCeEEEEEEHH
Confidence                  0111  11111222                    1367889999999999 9999      8999999999999


Q ss_pred             HHHHHHcc
Q 011147          374 DVMEELLQ  381 (492)
Q Consensus       374 DViEeLlg  381 (492)
                      |+++.+-.
T Consensus       111 Dil~~~~~  118 (126)
T d1zfja4         111 DIEKVIEF  118 (126)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhC
Confidence            99998864

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.04  E-value=1.8e-11  Score=104.48  Aligned_cols=111  Identities=13%  Similarity=0.114  Sum_probs=47.9

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeC--CCCceEEEEEccchHHHHHHhhccchhhHHhhhccCCCcccccccc
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVG--TPTNIIGAILGHSHMAVVVKCKNDSKEIAEMEKSKAPMQHDININS  293 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~--~~d~IvGiv~~~d~m~~vvk~l~~~~~~~~~~~~~~~v~~v~~~~~  293 (492)
                      +.+++++++++. ++.+.+.+++++++||+++  ..++++|+|+.+|+....-+.+            +.+..++     
T Consensus         5 ~pvtv~~~~tl~-da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~------------~~~~~~~-----   66 (120)
T d1jr1a4           5 DPVVLSPKDRVR-DVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEH------------DRFLEEI-----   66 (120)
T ss_dssp             TTCC----CCCC---CCBC---------------CTTCCC----------------------------------C-----
T ss_pred             CCEEECCcCCHH-HHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhcccc------------CceeEEE-----
Confidence            456899999998 9999999999999999974  2468999999777422111111            1111111     


Q ss_pred             hhhhhhccccccccccccCCCCCCCCcccchhhhhhhhhhhhhHHHHHHHHhHcCcc-eEEecccCCCCCCCcEEEEech
Q 011147          294 NLKQRQGELKGNVQNEQFNAYMNSPSVISSDIDIQSSMAKSADLHLCLKKWERQDVK-ISKEELESLPSVDEEVIGIITL  372 (492)
Q Consensus       294 ~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~l~~~~~~~~~~dl~~~l~~~~~~~~~-~lVv~~~~~pde~g~vvGIITl  372 (492)
                              +........++..                    .++.+|++.|++++.+ ++|+      |++|+++||||.
T Consensus        67 --------~~~~~~~~~v~~~--------------------~~~~~a~~~m~~~~i~~lpVV------d~~~~lvGiiT~  112 (120)
T d1jr1a4          67 --------MTKREDLVVAPAG--------------------ITLKEANEILQRSKKGKLPIV------NENDELVAIIAR  112 (120)
T ss_dssp             --------CSBTTTSCCEETT--------------------CCHHHHHHHTCSCC---CEEE------ETTTEEEEEECH
T ss_pred             --------EeeccCceEECCC--------------------CCHHHHHHHHHHcCccEEEEE------cCCCEEEEEEEH
Confidence                    0000001111222                    2367789999999998 9999      799999999999


Q ss_pred             hHHHHH
Q 011147          373 EDVMEE  378 (492)
Q Consensus       373 EDViEe  378 (492)
                      .||++.
T Consensus       113 ~Di~k~  118 (120)
T d1jr1a4         113 TDLKKN  118 (120)
T ss_dssp             HHHHHH
T ss_pred             HHhhhc
Confidence            999875

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.63  E-value=3.2e-05  Score=65.00  Aligned_cols=60  Identities=18%  Similarity=0.293  Sum_probs=51.4

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      ..+.+++++|++  ++.+++.++++. ++++.+.+++.+++||+++  ++++|+|+.+|+++.++
T Consensus        67 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          67 VKDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLDD--GKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             GGGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHH
T ss_pred             ccceeEeeeccc--eeEEeccCccHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHh
Confidence            345789999985  778899999998 9999999999999999974  78999999777666553

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.61  E-value=2.1e-05  Score=66.46  Aligned_cols=59  Identities=12%  Similarity=0.195  Sum_probs=50.3

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAV  264 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~  264 (492)
                      -.+.+|+++|++  ++.++..++++. ++++.+.+++..++||+++ .++++|+|+.+|++..
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lPVVD~-~g~lvGiIt~~Dil~~  120 (127)
T d2ouxa2          62 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDV  120 (127)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHH
T ss_pred             cccEEhhhhccC--CCccCCCCCCHH-HHHHHHHHhCCEEEEEEeC-CCEEEEEEEHHHHHHH
Confidence            357889999986  667899999998 9999999999999999975 4799999997666543

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=8.7e-06  Score=68.19  Aligned_cols=56  Identities=18%  Similarity=0.347  Sum_probs=48.2

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      +.....++++|++  ++.+++.++++. ++++.+.+++.+++||+++  ++++|+|+.+|+
T Consensus        63 ~~~~~~v~~im~~--~~~~v~~~~~~~-~~~~~m~~~~~~~lpVvd~--~~lvGiit~~Di  118 (123)
T d1y5ha3          63 DPNTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVTEADI  118 (123)
T ss_dssp             CTTTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHH
T ss_pred             CcccceEEEEeec--cceeeeecchHH-HHHHHHHHcCceEEEEEEC--CEEEEEEEHHHH
Confidence            4456789999985  778899999998 9999999999999999985  689999996554

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.51  E-value=1.6e-05  Score=68.78  Aligned_cols=58  Identities=14%  Similarity=0.256  Sum_probs=49.1

Q ss_pred             cccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          201 DMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       201 ~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      .+.+.+|+++|++  ++.++..++++. ++.+.+.+++++++||++++ ++++|+|+.+|++
T Consensus        95 ~~~~~~v~~~m~~--~~~tv~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dil  152 (156)
T d2yzqa1          95 QLPNKPVAEIMTR--DVIVATPHMTVH-EVALKMAKYSIEQLPVIRGE-GDLIGLIRDFDLL  152 (156)
T ss_dssp             --CCCBGGGTCBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEETT-TEEEEEEEHHHHG
T ss_pred             cccCCEeehhccc--CceEECcccccH-HHHHHHHHcCeeEEEEEeCC-CEEEEEEEHHHHH
Confidence            4677899999996  678899999997 99999999999999999854 7899999966543

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.48  E-value=2.1e-05  Score=65.78  Aligned_cols=73  Identities=11%  Similarity=0.133  Sum_probs=42.2

Q ss_pred             CCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          186 GELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       186 g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      |.+++.  ++....-.-.+..+.++|+.+.+++++..+.++. ++.+++.+++.+++||+++ .++++|+|+.+|++
T Consensus        44 GivT~~--Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~a~~~m~~~~i~~lpVVd~-~~~lvGiiT~~Di~  116 (120)
T d1jr1a4          44 GIISSR--DIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLK-EANEILQRSKKGKLPIVNE-NDELVAIIARTDLK  116 (120)
T ss_dssp             ------------------------CCSBTTTSCCEETTCCHH-HHHHHTCSCC---CEEEET-TTEEEEEECHHHHH
T ss_pred             eeeeee--eeeehhccccCceeEEEEeeccCceEECCCCCHH-HHHHHHHHcCccEEEEEcC-CCEEEEEEEHHHhh
Confidence            566532  3322222234567889999988999999999998 9999999999999999975 47899999966543

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.48  E-value=8.4e-05  Score=62.76  Aligned_cols=61  Identities=11%  Similarity=0.164  Sum_probs=51.1

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHh
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKC  268 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~  268 (492)
                      .+.+++++|++  ++.+++.++++. ++++.+.+++..++||.++  ++++|+|+.+|+++++.+.
T Consensus        68 ~~~~v~~im~~--~~~~v~~~~~~~-~~~~~m~~~~~~~l~V~~~--~~~vGivt~~Dil~a~~~~  128 (132)
T d2yzia1          68 YDIPVERIMTR--NLITANVNTPLG-EVLRKMAEHRIKHILIEEE--GKIVGIFTLSDLLEASRRR  128 (132)
T ss_dssp             TTSBGGGTCBC--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHCC
T ss_pred             cceeEeecccc--cccccCcchHHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHH
Confidence            35689999986  678899999998 9999999999999999864  7899999977766555443

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.41  E-value=6.8e-05  Score=62.29  Aligned_cols=58  Identities=12%  Similarity=0.213  Sum_probs=50.3

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAV  264 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~  264 (492)
                      +.+..|+++|++  ++.+++.++++. ++++.+.+++..++||.++  ++++|+++.+|++++
T Consensus        61 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~V~~~--~~l~Givt~~Dil~A  118 (120)
T d1pbja3          61 LAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILRA  118 (120)
T ss_dssp             TTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHH
T ss_pred             ccceeEeeeccc--ccccccchhHHH-HHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHhc
Confidence            567889999985  778899999998 9999999999999999864  789999997776554

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=97.37  E-value=9.6e-05  Score=63.55  Aligned_cols=61  Identities=10%  Similarity=0.221  Sum_probs=51.8

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      ..+.+++++|++  +++++.+++++. ++++.+.++++.++||+++ .++++|+|+.+|+++.+.
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lPVVd~-~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          62 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             CTTCBSTTTSBS--SCCCEESSCCHH-HHHHHHHHSCCSEEEEECS-SCBEEEEEEHHHHHHHHH
T ss_pred             ccccchHHhccc--CCccCCCCChHH-HHHHHHHHcCCCEEEEEeE-CCEEEEEEEHHHHHHHHH
Confidence            456789999995  678899999998 9999999999999999975 379999999777655443

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=97.36  E-value=8.7e-05  Score=63.15  Aligned_cols=63  Identities=10%  Similarity=0.174  Sum_probs=53.7

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhh
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCK  269 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l  269 (492)
                      +.+.+|+++|++  ++.+++.++++. ++++.+.+++.+++||.++  ++++|+|+.+|+++.+.+.+
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~~~~~~  134 (139)
T d2o16a3          72 AFETPLFEVMHT--DVTSVAPQAGLK-ESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAINLL  134 (139)
T ss_dssp             -CCCBHHHHSCS--CEEEBCTTSBHH-HHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHHHHH
T ss_pred             ccccchhHhhcc--ccccccccchHH-HHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHHHHHHHH
Confidence            566789999984  889999999998 9999999999999999985  78999999888776665554

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=9.6e-05  Score=64.86  Aligned_cols=62  Identities=6%  Similarity=0.132  Sum_probs=53.1

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHh
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKC  268 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~  268 (492)
                      .....++++|+|  ++++++.++++. ++.+.+.++++.++||.++  ++++|+|+.+|+++.+.+.
T Consensus        97 ~~~~~v~~im~~--~~~tv~~~~~l~-~v~~~~~~~~~~~l~V~d~--g~lvGiIt~~Dil~~l~~~  158 (169)
T d2j9la1          97 PPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHIAQM  158 (169)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHHH
T ss_pred             ccccchhhhccC--CCEEECCCCcHH-HHHHHHHhcCceEEEEEEC--CEEEEEEEHHHHHHHHHHH
Confidence            456789999997  678999999998 9999999999999999874  6899999988877666544

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.30  E-value=4.8e-05  Score=64.10  Aligned_cols=55  Identities=11%  Similarity=0.158  Sum_probs=47.5

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      .+.+|+++|++  ++.++..++++. ++++.+.+++.+++||+++ .++++|+|+.+|+
T Consensus        72 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~i~~lpVvd~-~g~lvGiit~~Di  126 (135)
T d3ddja2          72 STTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPVVDI-NDKPVGIVTEREF  126 (135)
T ss_dssp             HTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHH
T ss_pred             ccCCHHHHhCC--ccceEEeccccc-hhhhhhhhcceeEEEEEeC-CCEEEEEEEHHHH
Confidence            45789999986  778899999998 9999999999999999974 4789999995543

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.29  E-value=7.4e-05  Score=63.28  Aligned_cols=64  Identities=16%  Similarity=0.203  Sum_probs=54.4

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHhh
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKCK  269 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~l  269 (492)
                      ..+.+|+++|++  ++++++.++++. ++++.+.+++.+++||+++ .++++|+|+.+|+++.+.+.+
T Consensus        70 ~~~~~v~~im~~--~~~~v~~~~~~~-~~~~~m~~~~~~~l~Vvd~-~~~~iGiIt~~Dil~~l~~~~  133 (141)
T d3ddja1          70 FYGKVVKDVMVT--NLVTIDELASVN-RAAAEMIVKRIGSLLILNK-DNTIRGIITERDLLIALHHIL  133 (141)
T ss_dssp             HHTCBHHHHSBC--CCCBCCTTSBHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHH
T ss_pred             ccCCCHHHHhCc--ccccccccchhh-HHHHHHHHcCCCEEEEEcc-CCEEEEEEEHHHHHHHHHHHH
Confidence            356789999985  778899999998 9999999999999999975 478999999888777666554

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=97.28  E-value=0.00013  Score=62.53  Aligned_cols=96  Identities=14%  Similarity=0.061  Sum_probs=67.2

Q ss_pred             ccCHHHHHHHHHhhccccC---CCCC-CChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCc
Q 011147          165 LLRRAELKTLVDMHGNEAG---KGGE-LTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHS  240 (492)
Q Consensus       165 ~~s~eEL~~lv~~~~~e~~---~~g~-L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~S  240 (492)
                      .++..++..++.-+.....   ..+. ...................++++|.+  .+++++.++++. ++.+.+.+++..
T Consensus        59 ~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~-~~~~~m~~~~v~  135 (160)
T d2d4za3          59 SIDRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQ-KTHTLFSLLGLD  135 (160)
T ss_dssp             EEEHHHHHHHHHHHHHTTSSSCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHH-HHHHHHHHHTCS
T ss_pred             cchHHHHHHHHhhccccccccchhhccccchhhhhhhhhcccccceeeecccC--CCEEEcCCCCHH-HHHHHHHHcCCe
Confidence            4577888776653211100   0111 11223444555566777788999986  567899999998 999999999999


Q ss_pred             cceEEeCCCCceEEEEEccchHHHH
Q 011147          241 RVPIYVGTPTNIIGAILGHSHMAVV  265 (492)
Q Consensus       241 RiPV~~~~~d~IvGiv~~~d~m~~v  265 (492)
                      ++||.++  ++++|+|+.+|+++++
T Consensus       136 ~l~V~d~--g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3         136 RAYVTSM--GKLVGVVALAEIQAAI  158 (160)
T ss_dssp             EEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             EEEEEEC--CEEEEEEEHHHHHHHh
Confidence            9999874  7999999988776654

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.26  E-value=0.00012  Score=61.26  Aligned_cols=58  Identities=17%  Similarity=0.259  Sum_probs=49.2

Q ss_pred             ccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHH
Q 011147          204 QKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVV  265 (492)
Q Consensus       204 ~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~v  265 (492)
                      +.+++++|.+  ++.+++.++++. ++.+.+.+++.+++||+++ .++++|+|+.+|+++.+
T Consensus        66 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~-~~~lvGiit~~Dll~~i  123 (127)
T d2ef7a1          66 ETKAEEFMTA--SLITIREDSPIT-GALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAI  123 (127)
T ss_dssp             TCBGGGTSEE--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHH
T ss_pred             cchhhhhhhh--hccccccccchh-HHHHHHHHcCceEEEEEeC-CCeEEEEEEHHHHHHHH
Confidence            4678999985  778899999998 9999999999999999974 47999999977665444

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=0.00011  Score=62.37  Aligned_cols=93  Identities=17%  Similarity=0.257  Sum_probs=65.1

Q ss_pred             ccCHHHHHHHHHhhccccCCCCCCChhHHHHHhhcccccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceE
Q 011147          165 LLRRAELKTLVDMHGNEAGKGGELTHDETTIITGALDMTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPI  244 (492)
Q Consensus       165 ~~s~eEL~~lv~~~~~e~~~~g~L~~~E~~iI~~vl~l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV  244 (492)
                      .++..+|...+.....     +.+ ..........-.+....++++|.   +.+++..++++. ++++.+.+++.+++||
T Consensus        50 iis~~Dl~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~l~-~a~~~m~~~~i~~lpV  119 (145)
T d1o50a3          50 MIPVMHLLKVSGFHFF-----GFI-PKEELIRSSMKRLIAKNASEIML---DPVYVHMDTPLE-EALKLMIDNNIQEMPV  119 (145)
T ss_dssp             EEEHHHHHHHHHHHHH-----CCC-C-------CCCCCSSCBHHHHCB---CCCCBCTTSBHH-HHHHHHHHHTCSEEEE
T ss_pred             eeccchhhhhhhcccc-----ccc-chhHHHHhhhhhccccCHHHHcC---CCEEEcCCCCHH-HHHHHHHHcCceEEEE
Confidence            5788888776653211     112 22233344555678888999985   456799999997 9999999999999999


Q ss_pred             EeCCCCceEEEEEccchHHHHHHh
Q 011147          245 YVGTPTNIIGAILGHSHMAVVVKC  268 (492)
Q Consensus       245 ~~~~~d~IvGiv~~~d~m~~vvk~  268 (492)
                      +++ .++++|+|+.+|+++.+.+.
T Consensus       120 Vd~-~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3         120 VDE-KGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             ECT-TSCEEEEEEHHHHHHHHHHS
T ss_pred             EeC-CCeEEEEEEHHHHHHHHHhc
Confidence            974 47899999988776666544

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.22  E-value=0.00011  Score=61.33  Aligned_cols=58  Identities=12%  Similarity=0.110  Sum_probs=44.5

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      ..+..++++|.+  ++++++.++++. ++++.+.+++.+++||+++ .++++|+|+.+|+++
T Consensus        57 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~-~~~liGiit~~dil~  114 (122)
T d2yzqa2          57 PDEEQLAMLVKR--DVPVVKENDTLK-KAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIR  114 (122)
T ss_dssp             -------CCCBS--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHH
T ss_pred             hcccchhhcccc--ceeecchhhHHH-HHHHHHHHcCcEEEEEEeC-CCEEEEEEEHHHHHH
Confidence            456689999986  678899999998 9999999999999999974 489999999666543

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.20  E-value=9.3e-05  Score=63.36  Aligned_cols=56  Identities=11%  Similarity=0.141  Sum_probs=48.4

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccch
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSH  261 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~  261 (492)
                      ..+.+++++|+.  ++++++.++++. ++++.+.+++.+++||++++ ++++|+|+.+|+
T Consensus        66 ~~~~~v~~im~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~l~Giit~~Di  121 (142)
T d1pvma4          66 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDL  121 (142)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHH
T ss_pred             cccccccccccc--ccccccchhhHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHH
Confidence            456789999984  778999999998 99999999999999999753 789999995544

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.06  E-value=0.00017  Score=62.20  Aligned_cols=60  Identities=12%  Similarity=0.113  Sum_probs=49.7

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHH
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVK  267 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk  267 (492)
                      ..++++|++  +++++++++++. ++++.+.+++..|+||.+++.++++|+|..+|+++.+.+
T Consensus        96 ~~~~~~~~~--~~~~v~~~~~l~-~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~  155 (159)
T d2v8qe2          96 EVYLQDSFK--PLVCISPNASLF-DAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL  155 (159)
T ss_dssp             HHHSSSSCC--CCCCBCTTSBHH-HHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred             ceeeeeecc--ceEEECCCCcHH-HHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHH
Confidence            456778875  678899999998 999999999999999998766889999997776555433

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=97.01  E-value=0.00028  Score=59.29  Aligned_cols=61  Identities=25%  Similarity=0.287  Sum_probs=48.9

Q ss_pred             ccccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHh
Q 011147          202 MTQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKC  268 (492)
Q Consensus       202 l~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~  268 (492)
                      +.+.+|+++|++  ++.+++.++++. ++++.+.+++  .+||+++ .+.++|+|+.+|+++.+.|.
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~--~l~Vvd~-~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          71 LDQITVEEVMLT--DIPRLHINDPIM-KGFGMVINNG--FVCVEND-EQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             TTTSBHHHHSBC--SCCEEETTSBHH-HHHHHTTTCS--EEEEECT-TCBEEEEEEHHHHHHHHHHH
T ss_pred             cccccccccccc--cccccccchhHH-HHHHHHHhCC--EEEEEcc-CCEEEEEEEHHHHHHHHHhh
Confidence            456789999985  778899999998 9999887654  4999975 47999999988776665543

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=97.00  E-value=0.00037  Score=57.67  Aligned_cols=62  Identities=10%  Similarity=0.224  Sum_probs=51.6

Q ss_pred             cccccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHHh
Q 011147          203 TQKTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVKC  268 (492)
Q Consensus       203 ~~~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk~  268 (492)
                      .+.++.++|+.  +..+++.++++. ++++.+.+++..++||+++ .+.++|+|+.+|+++.+.+.
T Consensus        58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvde-~g~~~Gvit~~dil~~l~~~  119 (121)
T d1vr9a3          58 LDSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALIEA  119 (121)
T ss_dssp             TTSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHHHS
T ss_pred             ccccccccccC--ccEEECCCCCHH-HHHHHHHhcCceeeeeECC-CCeEEEEEEHHHHHHHHHHh
Confidence            35689999985  556799999998 9999999999999999975 47899999977776666544

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.95  E-value=0.00053  Score=57.14  Aligned_cols=55  Identities=11%  Similarity=0.219  Sum_probs=43.1

Q ss_pred             ccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHH
Q 011147          206 TAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMA  263 (492)
Q Consensus       206 ~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~  263 (492)
                      .+.+.|.. .+++++..++++. ++++++.+++.+++||+++ .++++|+|+.+|+++
T Consensus        60 ~~~~~~~~-~~~~~~~~~~~l~-~a~~~m~~~~~~~lpVVd~-~g~lvGiiT~~Dil~  114 (126)
T d1zfja4          60 PISEHMTS-EHLVTAAVGTDLE-TAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEK  114 (126)
T ss_dssp             BTTTSCCC-SCCCCEETTCCHH-HHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHH
T ss_pred             ceeeeeec-cceeecCCCCCHH-HHHHHHHhcCCcEEEEEcC-CCeEEEEEEHHHHHH
Confidence            33444443 3566789999998 9999999999999999964 479999999666544

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.73  E-value=0.00094  Score=57.32  Aligned_cols=62  Identities=11%  Similarity=0.127  Sum_probs=49.0

Q ss_pred             cccccccccccC----cceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          203 TQKTAKDAMTAM----SKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       203 ~~~~V~diMtPr----~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      .+.++.++|+.+    .+++++..++++. ++++.+.+++..++||.++ .++++|+|+.+|+++.++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~-~~~lvGivT~~Dil~~~~  133 (153)
T d2ooxe2          68 LDLSVGEALLKRPANFDGVHTCRATDRLD-GIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYII  133 (153)
T ss_dssp             GGSBHHHHHHTSCCCSSCCCEECTTCBHH-HHHHHHHHSCCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             cccchhhheeeeecccCCCeEECCCCcHH-HHHHhhhhceeeEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence            345677777543    3567899999998 9999999999999999974 479999999777655544

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.53  E-value=0.0011  Score=56.00  Aligned_cols=57  Identities=7%  Similarity=0.114  Sum_probs=45.9

Q ss_pred             cccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHHH
Q 011147          207 AKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVVK  267 (492)
Q Consensus       207 V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vvk  267 (492)
                      +...|.+  +.++++.++++. ++++.+.+++..++||+++ .++++|+|+.+|+++.+++
T Consensus        86 ~~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~-~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          86 HRSHYFE--GVLKCYLHETLE-AIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             GCCSCCC--SCCEECTTSBHH-HHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHS
T ss_pred             hhhhccC--CCeEECCCCcHH-HHHHHHHHcCceEEEEEcc-CCEEEEEEEHHHHHHHHHh
Confidence            3444553  667899999998 9999999999999999964 4789999998877666553

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.06  E-value=0.002  Score=56.30  Aligned_cols=61  Identities=8%  Similarity=0.056  Sum_probs=46.9

Q ss_pred             cccccccccCcceEEEeCCCChHHHHHHHHHHcCCccceEEeCC--C--CceEEEEEccchHHHHHHh
Q 011147          205 KTAKDAMTAMSKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGT--P--TNIIGAILGHSHMAVVVKC  268 (492)
Q Consensus       205 ~~V~diMtPr~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~--~--d~IvGiv~~~d~m~~vvk~  268 (492)
                      ..+.++|.+  ++++++.++++. +++..+.++++.|+||++++  .  ..++|+++.+|+++-+...
T Consensus       107 ~~~~~~~~~--~~i~v~~~~sl~-~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~  171 (179)
T d2ooxe1         107 ERKIGAIPP--ETIYVHPMHSLM-DACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMN  171 (179)
T ss_dssp             HHHTTCSCS--SCCCBCTTSBHH-HHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTT
T ss_pred             ceeeeeccc--CceEECCCCcHH-HHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHh
Confidence            345556764  678899999998 99999999999999999743  2  2599999977665544433

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.01  E-value=0.0024  Score=52.89  Aligned_cols=45  Identities=4%  Similarity=-0.015  Sum_probs=38.4

Q ss_pred             ceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchH
Q 011147          216 KIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHM  262 (492)
Q Consensus       216 ~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m  262 (492)
                      +..++..++++. ++++.+.+++.+++||+++ .++++|+|+.+|++
T Consensus        75 ~~~~v~~~~~~~-~a~~~m~~~~i~~lpVvd~-~g~l~Giit~~Dll  119 (131)
T d2riha1          75 SPITVLDTDPVH-VAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLC  119 (131)
T ss_dssp             CCCEEETTSBHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHH
T ss_pred             cceeEeeecchH-HHHHHHHHCCeEEEEEEcC-CCeEEEEEEHHHHH
Confidence            556789999998 9999999999999999974 47899999965543

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0029  Score=53.14  Aligned_cols=50  Identities=12%  Similarity=0.185  Sum_probs=41.5

Q ss_pred             cceEEEeCCCChHHHHHHHHHHcCCccceEEeCCCCceEEEEEccchHHHHH
Q 011147          215 SKIFSLDINSRLDEKTMGLIISNGHSRVPIYVGTPTNIIGAILGHSHMAVVV  266 (492)
Q Consensus       215 ~~v~~l~~~~tl~~e~~~~i~~~~~SRiPV~~~~~d~IvGiv~~~d~m~~vv  266 (492)
                      .+.++++.++++. ++++.+.+++.+++||.++ .++++|+|..+|+++.++
T Consensus        89 ~~~~~v~~~~~l~-~~~~~~~~~~~~~l~VVd~-~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          89 EGVYTCTKNDKLS-TIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             ---CEECTTSBHH-HHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             cccEEECCCCcHH-HHHHHHHhcCeeEEEEEeC-CCeEEEEEEHHHHHHHHh
Confidence            3567899999997 9999999999999999974 489999999888776665