Citrus Sinensis ID: 011149
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 492 | 2.2.26 [Sep-21-2011] | |||||||
| Q8L7S8 | 748 | DEAD-box ATP-dependent RN | no | no | 0.786 | 0.517 | 0.850 | 0.0 | |
| Q0DM51 | 758 | DEAD-box ATP-dependent RN | yes | no | 0.782 | 0.507 | 0.815 | 0.0 | |
| Q0D8N0 | 602 | DEAD-box ATP-dependent RN | no | no | 0.453 | 0.370 | 0.64 | 4e-81 | |
| Q9LUW5 | 616 | DEAD-box ATP-dependent RN | no | no | 0.445 | 0.355 | 0.643 | 2e-80 | |
| Q0ILZ4 | 628 | DEAD-box ATP-dependent RN | no | no | 0.426 | 0.334 | 0.638 | 4e-79 | |
| Q9LUW6 | 610 | DEAD-box ATP-dependent RN | no | no | 0.445 | 0.359 | 0.616 | 3e-78 | |
| Q650T9 | 696 | DEAD-box ATP-dependent RN | no | no | 0.727 | 0.514 | 0.402 | 9e-62 | |
| Q41382 | 685 | DEAD-box ATP-dependent RN | N/A | no | 0.731 | 0.525 | 0.384 | 3e-59 | |
| Q9JIK5 | 851 | Nucleolar RNA helicase 2 | yes | no | 0.813 | 0.470 | 0.354 | 2e-58 | |
| Q9BQ39 | 737 | ATP-dependent RNA helicas | yes | no | 0.747 | 0.499 | 0.379 | 2e-57 |
| >sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/387 (85%), Positives = 362/387 (93%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEE VE ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAE
Sbjct: 264 MLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAE 323
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGD
Sbjct: 324 GIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGD 383
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 384 ISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 443
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S
Sbjct: 444 AGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDS 503
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQL RD +RG
Sbjct: 504 IKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARG 563
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F+SARSV GFLSD+Y TAADE+GKI +IADDR+QGAVFDLPEEIAKELL K +P GN++S
Sbjct: 564 FLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLS 623
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRF 387
ITKLP LQDDGPSSDNYGRFSSRDR
Sbjct: 624 MITKLPPLQDDGPSSDNYGRFSSRDRM 650
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Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/385 (81%), Positives = 353/385 (91%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP +RQSMLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 264 MLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAE 323
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI T+TSKRT+LSDLITVYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGD
Sbjct: 324 GIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGD 383
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 384 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 443
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES
Sbjct: 444 AGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTES 503
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + RG
Sbjct: 504 IQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRG 563
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F S RSV GFLSDV AADE+GKI + AD++VQGAVFDLPEEIA++LL+ ++PPGNTI+
Sbjct: 564 FFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTIT 623
Query: 361 KITKLPALQDDGPSSDNYGRFSSRD 385
K+TKLPALQDDGP++D+YGRFS+ D
Sbjct: 624 KVTKLPALQDDGPATDSYGRFSNSD 648
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Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 302 bits (774), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 144/225 (64%), Positives = 182/225 (80%), Gaps = 2/225 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGF+EDVE+I+ENLP RQSMLFSATMPSW++K++ KYL +P+ IDLVG++D+KL E
Sbjct: 241 MLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDEDQKLPE 300
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ K +IL LI +A GGK IVFTQTKR+AD ++ A+ A +ALHGD
Sbjct: 301 GISLYSIASEHYGKPSILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYACQALHGD 360
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ+QRERTL+GFR G+F +LVATDVAARGLDIPNVDL+IHYELPN E FVHRSGRT R
Sbjct: 361 ISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTAR 420
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 225
AGK+G+AIL++T+ Q R VR +E+D+GCKF + P +E E+S
Sbjct: 421 AGKKGSAILIYTNDQARAVRIIEQDIGCKFTEL--PKIEVADEAS 463
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Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (768), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 141/219 (64%), Positives = 174/219 (79%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF EDVE+ILE LP KRQSM+FSATMPSW++ L++KYL+NPL +DLVG+ D+KLA+
Sbjct: 262 MLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLAD 321
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI Y+I + + +I+ L+T +AKGGK IVFTQTKRDAD +S AL EALHGD
Sbjct: 322 GITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGD 381
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F +LVATDVAARGLD+PNVDLIIHYELPN+ ETFVHR+GRTGR
Sbjct: 382 ISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGR 441
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
AGK+G+AIL+++ Q R V+ +ER+VG +F + VE
Sbjct: 442 AGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVE 480
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (756), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 134/210 (63%), Positives = 170/210 (80%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF+EDVE IL+ +PPKRQ+++FSATMP+W+++L++KYL NP+ IDLVG D+KLAE
Sbjct: 255 MLSVGFDEDVETILDRVPPKRQTLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAE 314
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ +K +L +LI +AKGGK IVFTQTKRDAD +S + +ALHGD
Sbjct: 315 GISLYSIASEGHAKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGD 374
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I+Q QRERTL GFR+G F +L+ATDVAARGLDIPNVDL+IH+ELPN E FVHRSGRTGR
Sbjct: 375 ITQAQRERTLKGFREGHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGR 434
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+G AI+M + Q R +R +E DVGCKF
Sbjct: 435 AGKKGKAIVMHSYQQSRAIRMVENDVGCKF 464
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Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (749), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 135/219 (61%), Positives = 172/219 (78%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF EDVE+IL+ LP KRQSM+FSATMPSW++ L++KYL+NPL IDLVG+ D+KLA+
Sbjct: 274 MLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLAD 333
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI +Y+I+ + + +I+ L+ + KGGK IVFTQTKRDAD ++ L EALHGD
Sbjct: 334 GITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGD 393
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F++LVATDVAARGLD+PNVDL+IHYELPN+ ETFVHR+GRTGR
Sbjct: 394 ISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGR 453
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
AGK+G+AIL+ Q R V+ +E++VG +F + VE
Sbjct: 454 AGKKGSAILIHGQDQTRAVKMIEKEVGSRFNELPSIAVE 492
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (606), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 153/380 (40%), Positives = 219/380 (57%), Gaps = 22/380 (5%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+P WVKKLS ++L + +DLVG++ K
Sbjct: 279 MLNMGFVDDVELILGKVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLK 338
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ A+ ++ ++ D+I Y++GG+TI+FT+TK A ++S I S AL
Sbjct: 339 ASASVRHLALPCNRAARAQVIPDIIRCYSRGGRTIIFTETKESASDLS---GLIAGSRAL 395
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 396 HGDVAQAQREVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 455
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+++F + V +ER+ G KFE +S P DV +S+ + ++ V
Sbjct: 456 TGRAGNTGVAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVS 515
Query: 238 PESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL-TR 293
+ F A++L+ G D LA ALA+ G++ RSL++ TL L T
Sbjct: 516 DSVIPVFREQAEQLLNSSGMSAVDLLAKALAKAVGYT-DIKKRSLLSSMDNHTTLLLQTG 574
Query: 294 DSAFSRGFMSARSVMGFLSDVYPTA--ADEIGKIHIIADDRVQGAVFDLPE-EIAKELLN 350
S ++ GF V+ L P AD G I I AD GAVFD+P E+ +
Sbjct: 575 RSVYAAGF-----VLSTLKRFMPEERLADVKG-ITITADG--TGAVFDVPSAEVEDYIQG 626
Query: 351 KQIPPGNTISKITKLPALQD 370
Q T+ ++ +LP LQ+
Sbjct: 627 AQNAAMVTVEEVKQLPPLQE 646
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (585), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 218/377 (57%), Gaps = 17/377 (4%)
Query: 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+PSWVK++S ++L + +DLV +Q K
Sbjct: 271 MLKMGFVDDVELILGKVDHVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLVSDQKMK 330
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ I +A+++ ++ D+I Y GG++I+FT+TK A +++ LT + L
Sbjct: 331 ASISVRHIVIPCSASARPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLT---GARPL 387
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 388 HGDIQQTQREVTLKGFRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGR 447
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A++++ +R +V +ER+ G KFE +S P DV ++ + A + +
Sbjct: 448 TGRAGNTGVAVMLY-DPKRSSVTKIERESGVKFEHLSAPQPVDVAKAVGIEAAAAILQIS 506
Query: 238 PESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
+ F A+ L+ G D L+ ALA+ +G+S RSL+ +G+VTL L
Sbjct: 507 DSVIPAFKDAAEELLSTSGLSAVDILSKALAKAAGYSD-IKERSLLTGMEGYVTLLLDAG 565
Query: 295 SAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP-EEIAKELLNKQI 353
F + + FL T AD I + + AD GAVFD+P +++ L+ +
Sbjct: 566 RPFYGQSFAYTVLKRFLP---ATKADSIMGVALTADK--SGAVFDVPVDDLETFLVGAEN 620
Query: 354 PPGNTISKITKLPALQD 370
G + + LP L++
Sbjct: 621 AAGVNLDVVKALPPLEE 637
|
Spinacia oleracea (taxid: 3562) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 162/457 (35%), Positives = 246/457 (53%), Gaps = 57/457 (12%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 416 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 472
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 473 GKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCI 532
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 533 KQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 592
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++ +
Sbjct: 593 YIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 652
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 653 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVTM 711
Query: 290 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FDL 340
+ M +S + +++G+ D +V+G V FD+
Sbjct: 712 -----------ILRCSIEMPNISYAWKELKEQLGE---SIDAKVKGMVFLKGKLGVCFDV 757
Query: 341 PEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRD------RFSRGGGS 393
E E+ K ++ T+ P L +GP GR RD R RGG
Sbjct: 758 RTEAVTEIQEKWHDSRRWQLTVATEQPEL--EGPPDGYRGRMGQRDGSRGAFRGQRGGSR 815
Query: 394 RFSRGGARGGAR--------GGGSMDRRGFRSSRSWG 422
F G RGG+R GG +R F S+++G
Sbjct: 816 NFRGQGQRGGSRNFRGQRPGGGNRGQKRSF--SKAFG 850
|
Can unwind double-stranded RNA (helicase) and can fold or introduce a secondary structure to a single-stranded RNA (foldase). Functions as cofactor for JUN-activated transcription. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 148/390 (37%), Positives = 225/390 (57%), Gaps = 22/390 (5%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 349
L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 591 TLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERLQ 645
Query: 350 NKQIPPGNTISKITKLPALQD--DGPSSDN 377
+ +S KLP +++ DG +S N
Sbjct: 646 AEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
|
Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 492 | ||||||
| 224124522 | 775 | predicted protein [Populus trichocarpa] | 0.969 | 0.615 | 0.796 | 0.0 | |
| 118489724 | 481 | unknown [Populus trichocarpa x Populus d | 0.969 | 0.991 | 0.798 | 0.0 | |
| 225450401 | 764 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.973 | 0.626 | 0.802 | 0.0 | |
| 356505715 | 771 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.991 | 0.632 | 0.794 | 0.0 | |
| 224124506 | 735 | predicted protein [Populus trichocarpa] | 0.969 | 0.648 | 0.795 | 0.0 | |
| 255543078 | 772 | dead box ATP-dependent RNA helicase, put | 0.957 | 0.610 | 0.758 | 0.0 | |
| 356534927 | 736 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.957 | 0.639 | 0.769 | 0.0 | |
| 357511641 | 753 | DEAD-box ATP-dependent RNA helicase [Med | 0.965 | 0.630 | 0.786 | 0.0 | |
| 343172316 | 782 | DEAD-box ATP-dependent RNA helicase, par | 0.963 | 0.606 | 0.747 | 0.0 | |
| 356574052 | 736 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.953 | 0.637 | 0.761 | 0.0 |
| >gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa] gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/492 (79%), Positives = 423/492 (85%), Gaps = 15/492 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+ GFEEDVE+ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPL IDLVG+Q+EKLAE
Sbjct: 295 MLSFGFEEDVEVILENLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAE 354
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+S TA SKRTILSDL+TVYAKGGKTI+FTQTKRDADEVS+ALT+ IASEALHGD
Sbjct: 355 GIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNTIASEALHGD 414
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPND ETFVHRSGRTGR
Sbjct: 415 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDAETFVHRSGRTGR 474
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILMFTSSQRRTVRSLERD GCKFEFVSPP +E+VLESSAEQVVATL+GVHPES
Sbjct: 475 AGKEGTAILMFTSSQRRTVRSLERDAGCKFEFVSPPAIEEVLESSAEQVVATLSGVHPES 534
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
VEFFTPTAQ+LIEE+GT+ALAAALA LSGFS+PPSSRSLI+H QGW TLQLTRD +SRG
Sbjct: 535 VEFFTPTAQKLIEEQGTNALAAALAHLSGFSQPPSSRSLISHAQGWATLQLTRDPTYSRG 594
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F+SARSV GFLSDVYP AADE+GKIH+IAD+RVQGAVFDLPEEIAKELLNKQIPPGNTI+
Sbjct: 595 FLSARSVTGFLSDVYPAAADEVGKIHVIADERVQGAVFDLPEEIAKELLNKQIPPGNTIA 654
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
KITKLPALQDDGP D YGRFSSRDR G R
Sbjct: 655 KITKLPALQDDGPPGDFYGRFSSRDR--------------PARGGPRGQRGGFRSSRGRG 700
Query: 421 WGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNC 480
G D +DG + RGGRS S N S+ S SS DDWLIGG RSSR SRDRSFGG+CFNC
Sbjct: 701 SGRDSDDGGTYRRGGRS-NSNENSWSQMSRSSGDDWLIGGRRSSRPPSRDRSFGGSCFNC 759
Query: 481 GKSGHRASECPN 492
G+SGHRASECPN
Sbjct: 760 GRSGHRASECPN 771
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118489724|gb|ABK96663.1| unknown [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/492 (79%), Positives = 424/492 (86%), Gaps = 15/492 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+ GFEEDVE+ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPL IDLVG+Q+EKLAE
Sbjct: 1 MLSFGFEEDVEVILENLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAE 60
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+S TA SKRTILSDL+TVYAKGGKTI+FTQTKRDADEVS+ALT+ IASEALHGD
Sbjct: 61 GIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNTIASEALHGD 120
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPND ETFVHRSGRTGR
Sbjct: 121 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDAETFVHRSGRTGR 180
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILMFTSSQRRTVRSLERD GCKFEFVSPP +E+VLESSAEQVVATL+GVHPES
Sbjct: 181 AGKEGTAILMFTSSQRRTVRSLERDAGCKFEFVSPPAIEEVLESSAEQVVATLSGVHPES 240
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
VEFFTPTAQ+LIEE+GT+ALAAALA LSGFS+PPSSRSLI+HEQGW TLQLTRD +SRG
Sbjct: 241 VEFFTPTAQKLIEEQGTNALAAALAHLSGFSQPPSSRSLISHEQGWATLQLTRDPTYSRG 300
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F+SARSV GFLSDVYP AADE+GKIH+IAD+RVQGAVFDLPEEIAKELLNKQIPPGNTI+
Sbjct: 301 FLSARSVTGFLSDVYPAAADEVGKIHVIADERVQGAVFDLPEEIAKELLNKQIPPGNTIA 360
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
KITKLPALQDDGP D YGRFSSRDR G R
Sbjct: 361 KITKLPALQDDGPPGDFYGRFSSRDR--------------PARGGPRGQRGGFRSSRGRG 406
Query: 421 WGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNC 480
G D +DG + RGGRS S N S+ S SS DDWLIGG RSSR SRDRSFGG+CFNC
Sbjct: 407 SGRDSDDGGTYRRGGRS-NSNENSWSQMSRSSGDDWLIGGRRSSRPPSRDRSFGGSCFNC 465
Query: 481 GKSGHRASECPN 492
G+SGHRASECPN
Sbjct: 466 GRSGHRASECPN 477
|
Source: Populus trichocarpa x Populus deltoides Species: Populus trichocarpa x Populus deltoides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450401|ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Vitis vinifera] gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/496 (80%), Positives = 429/496 (86%), Gaps = 17/496 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILE LP +RQSMLFSATMP+WVKKL+RKYLDNPL IDLVG+ DEKLAE
Sbjct: 278 MLAVGFEEDVEVILEKLPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLVGDHDEKLAE 337
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS+ALT+ IASEALHGD
Sbjct: 338 GIKLYAIPTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSMALTNSIASEALHGD 397
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 398 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 457
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILMFTSSQRRTV+SLERDVGCKFEF+SPP +E+VLESSAEQVVATLNGVHPES
Sbjct: 458 AGKEGTAILMFTSSQRRTVKSLERDVGCKFEFISPPAIEEVLESSAEQVVATLNGVHPES 517
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
VEFFTPTAQ+LIEEKGT ALAAALA LSGFS+PPS RSLI+HEQGWVTLQLTRDS +SRG
Sbjct: 518 VEFFTPTAQKLIEEKGTGALAAALAHLSGFSQPPSFRSLISHEQGWVTLQLTRDSGYSRG 577
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F+SARSV GFLSDVYPTAADE+GKI+++AD+RVQGAVFDLPEEIAKELLNKQ+PPGNTIS
Sbjct: 578 FLSARSVTGFLSDVYPTAADELGKIYLVADERVQGAVFDLPEEIAKELLNKQMPPGNTIS 637
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
KITKLPALQDDGP+ D YGRFS+RDR S RGG+R R S
Sbjct: 638 KITKLPALQDDGPAGDYYGRFSNRDRSS------------RGGSRERRGSRISRGRGSSW 685
Query: 421 WGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLI----GGSRSSRSSSRDRSFGGA 476
DD + RGGRSFRS NN SR +S+DDWLI SS SR+RSFGG+
Sbjct: 686 GSDDDGGDDLNRRGGRSFRSNNN-WSRNLRTSEDDWLIGGRRSNRSSSSFGSRERSFGGS 744
Query: 477 CFNCGKSGHRASECPN 492
CF CG+SGHRASECPN
Sbjct: 745 CFTCGRSGHRASECPN 760
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505715|ref|XP_003521635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/496 (79%), Positives = 433/496 (87%), Gaps = 8/496 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILENLP +RQSMLFSATMPSWVKKL+RKYL+NPL IDLVG+++EKLAE
Sbjct: 272 MLAVGFEEDVEMILENLPAQRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAE 331
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+ TATSKRTILSDL+TVYAKGGKTIVFTQTKRDADEVSL+LT+ I SEALHGD
Sbjct: 332 GIKLYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGD 391
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 392 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 451
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK+G AIL++TSSQRRTVRSLERDVGCKFEFVS P +E+VLESSAEQVVATL GVHPES
Sbjct: 452 AGKQGNAILLYTSSQRRTVRSLERDVGCKFEFVSAPAMEEVLESSAEQVVATLGGVHPES 511
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
V+FFTPTAQRLIEE+GT ALAAALAQLSGFSRPPSSRSLI HEQGW+TLQLTRDS SR
Sbjct: 512 VQFFTPTAQRLIEEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWITLQLTRDSD-SRR 570
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
+ SARS+ GFLSDVYP AADE+GKIH+IAD++VQGAVFDLPEEIAKELLN+ IPPGNT+S
Sbjct: 571 YFSARSITGFLSDVYPAAADEVGKIHLIADEKVQGAVFDLPEEIAKELLNRDIPPGNTVS 630
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
KITKLP+LQDDGP SD YGRFS RDR SR G + +RGG+ S DRRGF+SSR
Sbjct: 631 KITKLPSLQDDGPPSDFYGRFSDRDRSSRRGSTSRGGFSSRGGS---ASRDRRGFKSSRG 687
Query: 421 WGSDDE-DGF---SSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGA 476
W +D D F SS RGGR+F++GN+ SS DDWLIGG R S S FGG
Sbjct: 688 WDVEDSGDDFGDQSSRRGGRNFKTGNSWSRAAGKSSGDDWLIGGGRRSSRPSSSDRFGGT 747
Query: 477 CFNCGKSGHRASECPN 492
CFNCG+SGHRAS+CPN
Sbjct: 748 CFNCGESGHRASDCPN 763
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa] gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/493 (79%), Positives = 425/493 (86%), Gaps = 16/493 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+ GFEEDVE+ILE+LP KRQSMLFSATMP+WVKKL+RKYLDNPL IDLVG+++EKLAE
Sbjct: 258 MLSFGFEEDVEVILESLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDREEKLAE 317
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAISTTATSKRTILSDL+TVYAKG KTI+FT+TKRDADEVS+ALT IASEALHGD
Sbjct: 318 GIKLYAISTTATSKRTILSDLVTVYAKGEKTIIFTRTKRDADEVSMALTQSIASEALHGD 377
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 378 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 437
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILMFT+SQRRTVRSLERD GCKFEFVSPP +E++LESS EQVVATLNGVHPES
Sbjct: 438 AGKEGTAILMFTNSQRRTVRSLERDAGCKFEFVSPPAIEELLESSTEQVVATLNGVHPES 497
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
VEFFTPTAQ+LIEE+GT ALAAALA LSGFSRPPSSRSLI+HEQGW TLQLTRD +SRG
Sbjct: 498 VEFFTPTAQKLIEEQGTSALAAALAHLSGFSRPPSSRSLISHEQGWTTLQLTRDPTYSRG 557
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F+SARSV GFLSDVYP AADEIGKIH+IAD+RVQGAVFDLPEEIAKELLNKQ+PPGNTI
Sbjct: 558 FLSARSVTGFLSDVYPAAADEIGKIHLIADERVQGAVFDLPEEIAKELLNKQLPPGNTIE 617
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
KITKLPALQDDGP SD YGRFSSRDR +RGG G +G G
Sbjct: 618 KITKLPALQDDGPPSDFYGRFSSRDRPARGGPRGQRGGFRSSRGQGSGRY---------- 667
Query: 421 WGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGG-SRSSRSSSRDRSFGGACFN 479
SDDE ++ RGGRS + N R S S SS DDWL+GG S SS RSFGG+CFN
Sbjct: 668 --SDDEG--TNRRGGRSNSNENTR-SWMSRSSGDDWLVGGRRSSRPSSRDSRSFGGSCFN 722
Query: 480 CGKSGHRASECPN 492
CG+SGHRASECPN
Sbjct: 723 CGRSGHRASECPN 735
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/510 (75%), Positives = 423/510 (82%), Gaps = 39/510 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+ GFEEDVE+ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPL IDLVG+Q+EKLAE
Sbjct: 280 MLSFGFEEDVEVILENLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAE 339
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAIST ATSKR+ILSDL+TVYAKGGKTI+FTQTKRDADEVS+ LT+ IASEALHGD
Sbjct: 340 GIKLYAISTNATSKRSILSDLVTVYAKGGKTIIFTQTKRDADEVSMVLTNSIASEALHGD 399
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 400 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 459
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTA+LMFTSSQRRTV+SLERDVGC+FEFVSPP E+VLESSAEQV+ATL+GVHPES
Sbjct: 460 AGKEGTAVLMFTSSQRRTVKSLERDVGCRFEFVSPPGTEEVLESSAEQVIATLSGVHPES 519
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
V FFTPTAQRLIEE+GT ALAAALAQLSGFS+PPSSRSLI+HEQGW TLQLTRD ++SRG
Sbjct: 520 VGFFTPTAQRLIEEQGTSALAAALAQLSGFSQPPSSRSLISHEQGWTTLQLTRDPSYSRG 579
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F+SARSV GFLSDVY AADE+GKIHIIAD++VQGAVFDLPEEIAKELLNKQ+PPGNTIS
Sbjct: 580 FLSARSVTGFLSDVYTAAADEVGKIHIIADEKVQGAVFDLPEEIAKELLNKQLPPGNTIS 639
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
KITKLP+LQDDGP SD YGRFSSRDR RGGG + G
Sbjct: 640 KITKLPSLQDDGPPSDFYGRFSSRDRPPRGGGRGQRGSRSSQGWG----------GGRGG 689
Query: 421 WGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSS---------------- 464
SDD+D + G FS SS DDWLIGG RSS
Sbjct: 690 RNSDDDDD-----------TFRRGGRSFSRSSSDDWLIGGGRSSRPSPRGRSSPRDWSSP 738
Query: 465 --RSSSRDRSFGGACFNCGKSGHRASECPN 492
RSS RDRSFGG+CFNCG+SGHRAS+CPN
Sbjct: 739 RDRSSPRDRSFGGSCFNCGRSGHRASDCPN 768
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534927|ref|XP_003536002.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/495 (76%), Positives = 414/495 (83%), Gaps = 24/495 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+IL+ +P +RQ+MLFSATMP WVKKLSRKYL+NPL IDLVG Q+EKLAE
Sbjct: 253 MLAVGFEEDVEVILDKVPTQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAE 312
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+ TATSKRT+LSDLITVYAKGGKTIVFTQTK+DADEVS+ALTS IASEALHGD
Sbjct: 313 GIKLYALLATATSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGD 372
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL+IHYELPND ETFVHRSGRTGR
Sbjct: 373 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGR 432
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILM+TSSQRRTVRSLERDVG KFEFVSPP VE++LESSAEQVVATLN VHPES
Sbjct: 433 AGKEGTAILMYTSSQRRTVRSLERDVGSKFEFVSPPAVEEILESSAEQVVATLNRVHPES 492
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
VEFFT TAQ+L+EE+G ALAAALAQ+SGFS+PPS RSLINHEQGW TLQLTRDS S
Sbjct: 493 VEFFTATAQKLVEEQGARALAAALAQMSGFSQPPSCRSLINHEQGWTTLQLTRDSDTSGR 552
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
+ SARSV GFLSDVY AADE+GKIH+IAD+RVQGAVFDLPEEIAKELLNK +P GNTIS
Sbjct: 553 YFSARSVTGFLSDVYSQAADEVGKIHLIADERVQGAVFDLPEEIAKELLNKDMPSGNTIS 612
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSS-- 418
KITKLP LQD+ P+SD YG+FS RDR + GS D+RGFRSS
Sbjct: 613 KITKLPPLQDNEPASDFYGKFSDRDR-----------------SNPRGSRDQRGFRSSRG 655
Query: 419 RSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGG---SRSSRSSSRDRSFGG 475
R G D D F RGGRSFRSGNNR SS +DWLIGG S SS+RD GG
Sbjct: 656 REGGQDSNDEF--GRGGRSFRSGNNRSRTTGKSSGNDWLIGGSSRSSRFSSSNRDGGHGG 713
Query: 476 ACFNCGKSGHRASEC 490
ACFNCGK GHRAS+C
Sbjct: 714 ACFNCGKPGHRASDC 728
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511641|ref|XP_003626109.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula] gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago truncatula] gi|355501124|gb|AES82327.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/497 (78%), Positives = 425/497 (85%), Gaps = 22/497 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILE LP KRQSMLFSATMPSWVKKL+RKYL+NPL IDLVG+++EKLAE
Sbjct: 268 MLAVGFEEDVEVILEKLPAKRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAE 327
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAIS T+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT+ I SEALHGD
Sbjct: 328 GIKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGD 387
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 388 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 447
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GTAILMFT SQRRTVRSLERDVGCKFEFV+ P VEDVLESSAEQVV TLNGVHPES
Sbjct: 448 AGKLGTAILMFTGSQRRTVRSLERDVGCKFEFVNAPSVEDVLESSAEQVVVTLNGVHPES 507
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+ FFTPTAQ+LIEEKGT ALAAALAQ+SGFS+PPSSRSLI HEQGWVTLQLTRDS S+
Sbjct: 508 IAFFTPTAQKLIEEKGTTALAAALAQMSGFSQPPSSRSLITHEQGWVTLQLTRDSENSQR 567
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
+ SARSV GFLSDVY AADE+GK+H+IAD+RVQGAVFDLPE+IAKELL+K IP GNTIS
Sbjct: 568 YFSARSVTGFLSDVYSKAADEVGKVHLIADERVQGAVFDLPEDIAKELLDKDIPAGNTIS 627
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
K+TKLP LQDDGP SD YG+FS R+R +R GGSR RG SSR
Sbjct: 628 KVTKLPPLQDDGPPSDFYGKFSDRERNNRRGGSRDGRGFR----------------SSRG 671
Query: 421 W----GSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGG-SRSSRSSSRDRSFGG 475
W GSDD+ G SS RGGRS++SGN+ S+ SS DDWLIGG S SSS +RSF G
Sbjct: 672 WDGGRGSDDDFGDSSRRGGRSYKSGNS-WSKPERSSRDDWLIGGRQSSRSSSSPNRSFAG 730
Query: 476 ACFNCGKSGHRASECPN 492
CF CG+SGHRAS+CPN
Sbjct: 731 TCFTCGESGHRASDCPN 747
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|343172316|gb|AEL98862.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/510 (74%), Positives = 426/510 (83%), Gaps = 36/510 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILE LP +RQSMLFSATMP+W+KKLSRKYLDNPL IDLVG+++EKLAE
Sbjct: 287 MLAVGFEEDVEVILEKLPKERQSMLFSATMPTWIKKLSRKYLDNPLTIDLVGDREEKLAE 346
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAIS+TA SKRT+LSD+ITVYAKGGKTIVFTQTKRDADEVSLAL++ I SEALHGD
Sbjct: 347 GIKLYAISSTAASKRTMLSDVITVYAKGGKTIVFTQTKRDADEVSLALSNSIPSEALHGD 406
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKF+VLVATDVA+RGLDIPNVDL++HYE+PNDPETFVHRSGRTGR
Sbjct: 407 ISQHQRERTLNGFRQGKFSVLVATDVASRGLDIPNVDLVVHYEMPNDPETFVHRSGRTGR 466
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTA+LM+TS+QRRTVRSLERDVGC F +V P VE+VL SSA+QVVATL GVHPES
Sbjct: 467 AGKEGTALLMYTSNQRRTVRSLERDVGCHFGYVGAPSVEEVLVSSADQVVATLRGVHPES 526
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++FFTPTAQ+L+EE+GT ALAAA+A LSGFS+PPS++SL++HEQGWVTLQL+RDS FSRG
Sbjct: 527 IKFFTPTAQKLLEEQGTGALAAAIAHLSGFSQPPSAKSLLSHEQGWVTLQLSRDSVFSRG 586
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
+MSARSVMGFLSDVYPTAADE+GKI +IAD+RVQGAVFDLPEEIAKELL K++PPGNT+S
Sbjct: 587 YMSARSVMGFLSDVYPTAADEVGKIQLIADERVQGAVFDLPEEIAKELLKKELPPGNTLS 646
Query: 361 KITKLPALQDDGPSSDNYGRFSSR---------DRFSRGGGSRFSRGGARGGARGGGSMD 411
KI+KLPALQDD P SDNYGRFS R DR GGGSR SRG
Sbjct: 647 KISKLPALQDDAPPSDNYGRFSGRGRGSRGGMSDRRGSGGGSRTSRGWG----------- 695
Query: 412 RRGFRSSRSWGSDDEDGFSSS--RGGRSFRSGNNR--GSRFSTSSDDDWLIGGSRSSRSS 467
RS SD EDG S S RGGRS R NR S+SS DDWLIGG RSS S
Sbjct: 696 -------RSQDSDFEDGGSDSFRRGGRSPRPSTNRWSSGSSSSSSGDDWLIGGGRSSSRS 748
Query: 468 S-----RDRSFGGACFNCGKSGHRASECPN 492
S RD F GACFNCGKSGHRA+ECP
Sbjct: 749 SPMGGRRDGQFSGACFNCGKSGHRATECPT 778
|
Source: Silene latifolia Species: Silene latifolia Genus: Silene Family: Caryophyllaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574052|ref|XP_003555166.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/495 (76%), Positives = 412/495 (83%), Gaps = 26/495 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+IL+ +P +RQ+MLFSATMP WVKKLSRKYL+NPL IDLVG Q+EKLAE
Sbjct: 255 MLAVGFEEDVEVILDKVPAQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAE 314
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+S TA+SKRT+LSDLITVYAKGGKTIVFTQTK+DADEVS+ALTS IASEALHGD
Sbjct: 315 GIKLYALSATASSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGD 374
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL+IHYELPND ETFVHRSGRTGR
Sbjct: 375 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGR 434
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILM+TSSQRRTVRSLERDVGCKFEFVSPP +E++LESSAEQVVATLN VHPES
Sbjct: 435 AGKEGTAILMYTSSQRRTVRSLERDVGCKFEFVSPPAMEEILESSAEQVVATLNRVHPES 494
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
V+FF TAQ+L+EE+G ALAAALAQ+SGFS+PPS RSLINHEQGW TLQLTRD S
Sbjct: 495 VDFFIATAQKLVEEQGARALAAALAQMSGFSQPPSCRSLINHEQGWTTLQLTRDPDTSAR 554
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
+ SARSV GFLSDVY AADE+GKIH+IAD+RVQGAVFDLPEEIAKELL K +P GNTIS
Sbjct: 555 YFSARSVTGFLSDVYSPAADEVGKIHLIADERVQGAVFDLPEEIAKELLTKDLPSGNTIS 614
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
KITKLP LQDD P+SD YG+FS RDR +R GS D+RGFRSSR
Sbjct: 615 KITKLPPLQDDEPASDFYGKFSDRDRSNR-----------------RGSRDQRGFRSSRG 657
Query: 421 W--GSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRS---FGG 475
W G D +D F +GGRSFRSGN R SS DDWLIGGS S S GG
Sbjct: 658 WEGGQDSDDEF--GQGGRSFRSGNK--FRMGKSSGDDWLIGGSSRSSRFSSSNRSGGHGG 713
Query: 476 ACFNCGKSGHRASEC 490
ACFNCGK GHRAS+C
Sbjct: 714 ACFNCGKPGHRASDC 728
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 492 | ||||||
| TAIR|locus:504955106 | 748 | emb1138 "embryo defective 1138 | 0.768 | 0.505 | 0.849 | 4e-177 | |
| TAIR|locus:2087852 | 616 | PMH2 "putative mitochondrial R | 0.445 | 0.355 | 0.643 | 9.6e-73 | |
| TAIR|locus:2087832 | 610 | PMH1 "putative mitochondrial R | 0.477 | 0.385 | 0.595 | 4.8e-71 | |
| ZFIN|ZDB-GENE-031113-10 | 759 | ddx21 "DEAD (Asp-Glu-Ala-Asp) | 0.747 | 0.484 | 0.396 | 1e-59 | |
| UNIPROTKB|F1MMK3 | 737 | DDX50 "Uncharacterized protein | 0.754 | 0.503 | 0.379 | 3.2e-58 | |
| UNIPROTKB|E2QTT0 | 738 | DDX50 "Uncharacterized protein | 0.754 | 0.502 | 0.377 | 5.1e-58 | |
| UNIPROTKB|E2RPT4 | 687 | DDX50 "Uncharacterized protein | 0.754 | 0.540 | 0.377 | 5.1e-58 | |
| UNIPROTKB|Q9BQ39 | 737 | DDX50 "ATP-dependent RNA helic | 0.754 | 0.503 | 0.377 | 1.1e-57 | |
| MGI|MGI:2182303 | 734 | Ddx50 "DEAD (Asp-Glu-Ala-Asp) | 0.754 | 0.505 | 0.372 | 1.1e-57 | |
| TAIR|locus:2167903 | 671 | PRH75 [Arabidopsis thaliana (t | 0.735 | 0.539 | 0.390 | 5.9e-57 |
| TAIR|locus:504955106 emb1138 "embryo defective 1138" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1652 (586.6 bits), Expect = 4.0e-177, Sum P(2) = 4.0e-177
Identities = 321/378 (84%), Positives = 354/378 (93%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEE VE ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAE
Sbjct: 264 MLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAE 323
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGD
Sbjct: 324 GIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGD 383
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 384 ISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 443
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S
Sbjct: 444 AGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDS 503
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQL RD +RG
Sbjct: 504 IKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARG 563
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F+SARSV GFLSD+Y TAADE+GKI +IADDR+QGAVFDLPEEIAKELL K +P GN++S
Sbjct: 564 FLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLS 623
Query: 361 KITKLPALQDDGPSSDNY 378
ITKLP LQDDGPSSDNY
Sbjct: 624 MITKLPPLQDDGPSSDNY 641
|
|
| TAIR|locus:2087852 PMH2 "putative mitochondrial RNA helicase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 141/219 (64%), Positives = 174/219 (79%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF EDVE+ILE LP KRQSM+FSATMPSW++ L++KYL+NPL +DLVG+ D+KLA+
Sbjct: 262 MLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLAD 321
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI Y+I + + +I+ L+T +AKGGK IVFTQTKRDAD +S AL EALHGD
Sbjct: 322 GITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGD 381
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F +LVATDVAARGLD+PNVDLIIHYELPN+ ETFVHR+GRTGR
Sbjct: 382 ISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGR 441
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
AGK+G+AIL+++ Q R V+ +ER+VG +F + VE
Sbjct: 442 AGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVE 480
|
|
| TAIR|locus:2087832 PMH1 "putative mitochondrial RNA helicase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 140/235 (59%), Positives = 177/235 (75%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF EDVE+IL+ LP KRQSM+FSATMPSW++ L++KYL+NPL IDLVG+ D+KLA+
Sbjct: 274 MLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLAD 333
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI +Y+I+ + + +I+ L+ + KGGK IVFTQTKRDAD ++ L EALHGD
Sbjct: 334 GITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGD 393
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F++LVATDVAARGLD+PNVDL+IHYELPN+ ETFVHR+GRTGR
Sbjct: 394 ISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGR 453
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 235
AGK+G+AIL+ Q R V+ +E++VG +F + VE S E V A G
Sbjct: 454 AGKKGSAILIHGQDQTRAVKMIEKEVGSRFNELPSIAVERGSASMFEGVGARSGG 508
|
|
| ZFIN|ZDB-GENE-031113-10 ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 21" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 153/386 (39%), Positives = 229/386 (59%)
Query: 1 MLAVGFEEDVELIL-----ENLPPKRQSMLFSATMPSWVKKLSRKYLDNP-LNIDLVGNQ 54
ML +GF E VE IL ++ K Q++LFSAT PSWV +++KY+ + +++DL+G +
Sbjct: 324 MLDMGFAEQVEEILSASYKKDAEQKPQTLLFSATCPSWVYDVAKKYMRSQFIHVDLIGKK 383
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI+ + + +++ D+I VY+ G+TIVF +TK++A E+SL TSI
Sbjct: 384 TQKAATTVEHLAIACHWSQRASVIGDVIQVYSGSHGRTIVFCETKKEATELSLN-TSIKQ 442
Query: 114 S-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
S ++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I PND E+++
Sbjct: 443 SAQSLHGDIPQKQREVTLKGFRNGSFEVLVATNVAARGLDIPEVDLVIQSSPPNDVESYI 502
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HRSGRTGRAG+ G I + + ++ +E+ G F+ V P D+++SS++ V
Sbjct: 503 HRSGRTGRAGRTGICICFYQRKEESQLKFVEQKAGITFKRVGVPTAYDIIQSSSKDAVRF 562
Query: 233 LNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
L+ V +V +F AQ LI+++G +ALAAALA +SG + RSLIN E G+ ++ L
Sbjct: 563 LDSVPAVAVGYFREAAQELIQQRGAVEALAAALAHISG-ATSLEQRSLINSEPGFSSMIL 621
Query: 292 TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 351
+ + R + L + I H++ +G FD+P KE+ K
Sbjct: 622 SCSQEMHSISFAWRGLKEQLGEEID---QHIS--HMVFIKGKKGVCFDVPVSKLKEVQEK 676
Query: 352 -QIPPGNTISKITKLPALQDD-GPSS 375
Q T+S T+LP L+ P+S
Sbjct: 677 WQDSRRWTLSTATQLPELEQSLRPNS 702
|
|
| UNIPROTKB|F1MMK3 DDX50 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 147/387 (37%), Positives = 223/387 (57%)
Query: 1 MLAVGFEEDVELILE-----NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQ 54
ML +GF E VE IL + Q++LFSAT P WV K+++KY+ + +DLVG
Sbjct: 295 MLDLGFAEQVEDILHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKM 354
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 355 TQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQN 414
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+++H
Sbjct: 415 AQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIH 474
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + + +L
Sbjct: 475 RSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSL 534
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+ L
Sbjct: 535 ASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASSF-EPRSLITSDKGFVTMTLE 593
Query: 293 RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352
+ + + LS A +I ++ ++ + G FD+P ++ L +
Sbjct: 594 SPEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERLQAEW 648
Query: 353 IPPGNTISKITKLPALQD--DGPSSDN 377
+S KLP +++ DG +S N
Sbjct: 649 HDSDWILSVPAKLPEIEEYYDGNTSSN 675
|
|
| UNIPROTKB|E2QTT0 DDX50 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 146/387 (37%), Positives = 223/387 (57%)
Query: 1 MLAVGFEEDVELILE-----NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQ 54
ML +GF E VE I+ + Q++LFSAT P WV K+++KY+ + +DLVG
Sbjct: 296 MLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKM 355
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 356 TQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQN 415
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+++H
Sbjct: 416 AQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIH 475
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + + +L
Sbjct: 476 RSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSL 535
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+ L
Sbjct: 536 ASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASSF-EPRSLITSDKGFVTMTLE 594
Query: 293 RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352
+ + + LS A +I ++ ++ + G FD+P ++ L +
Sbjct: 595 SPEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERLQAEW 649
Query: 353 IPPGNTISKITKLPALQD--DGPSSDN 377
+S KLP +++ DG +S N
Sbjct: 650 HDSDWILSLPAKLPEIEEYYDGNTSSN 676
|
|
| UNIPROTKB|E2RPT4 DDX50 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 146/387 (37%), Positives = 223/387 (57%)
Query: 1 MLAVGFEEDVELILE-----NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQ 54
ML +GF E VE I+ + Q++LFSAT P WV K+++KY+ + +DLVG
Sbjct: 297 MLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKM 356
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 357 TQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQN 416
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+++H
Sbjct: 417 AQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIH 476
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + + +L
Sbjct: 477 RSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSL 536
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+ L
Sbjct: 537 ASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASSF-EPRSLITSDKGFVTMTLE 595
Query: 293 RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352
+ + + LS A +I ++ ++ + G FD+P ++ L +
Sbjct: 596 SPEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERLQAEW 650
Query: 353 IPPGNTISKITKLPALQD--DGPSSDN 377
+S KLP +++ DG +S N
Sbjct: 651 HDSDWILSLPAKLPEIEEYYDGNTSSN 677
|
|
| UNIPROTKB|Q9BQ39 DDX50 "ATP-dependent RNA helicase DDX50" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 146/387 (37%), Positives = 223/387 (57%)
Query: 1 MLAVGFEEDVELILE-----NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQ 54
ML +GF E VE I+ + Q++LFSAT P WV K+++KY+ + +DLVG
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKM 354
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 355 TQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQN 414
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+++H
Sbjct: 415 AQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIH 474
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + + +L
Sbjct: 475 RSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSL 534
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+ L
Sbjct: 535 ASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASSF-EPRSLITSDKGFVTMTLE 593
Query: 293 RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352
+ + + LS A +I ++ ++ + G FD+P ++ L +
Sbjct: 594 SLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERLQAEW 648
Query: 353 IPPGNTISKITKLPALQD--DGPSSDN 377
+S KLP +++ DG +S N
Sbjct: 649 HDSDWILSVPAKLPEIEEYYDGNTSSN 675
|
|
| MGI|MGI:2182303 Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 144/387 (37%), Positives = 222/387 (57%)
Query: 1 MLAVGFEEDVELILE-----NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQ 54
ML +GF E VE I+ + Q++LFSAT P WV K+++KY+ + +DLVG
Sbjct: 292 MLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKM 351
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 TQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQN 411
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+++H
Sbjct: 412 AQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIH 471
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S + + +L
Sbjct: 472 RSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSL 531
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+ L
Sbjct: 532 ASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASSF-EPRSLITSDKGFVTMTLE 590
Query: 293 RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352
+ + + LS A + ++ ++ + G FD+P ++ L +
Sbjct: 591 SPEEIQDVSCAWKELNRKLSS---NAVSHVTRMCLLKGN--MGVCFDVPTSESERLQAEW 645
Query: 353 IPPGNTISKITKLPALQD--DGPSSDN 377
+S KLP +++ DG +S N
Sbjct: 646 HDSDWILSVPAKLPEIEEYYDGNTSSN 672
|
|
| TAIR|locus:2167903 PRH75 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 149/382 (39%), Positives = 214/382 (56%)
Query: 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF EDVELIL + K Q++LFSAT+PSWVK +S ++L + IDLVGN K
Sbjct: 260 MLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMK 319
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ AI + ++ D+I+ Y+ GG+TI+F +TK E+S L S AL
Sbjct: 320 ASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDG---SRAL 376
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+I Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P + E ++HRSGR
Sbjct: 377 HGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGR 436
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+ ++ S++ +V +E++ G KFE ++ P +++ S + + V
Sbjct: 437 TGRAGNTGVAVTLY-DSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVC 495
Query: 238 PESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
V F A+ L+E G A LA ALA+ +GF+ RSL+ + +VTL L
Sbjct: 496 DSVVPAFLEAAKELLETSGLSAEVLLAKALAKTAGFTEI-KKRSLLTSMENYVTLHLEA- 553
Query: 295 SAFSRGFMSARSVMGFLSDVYPTAADE-IGKIHIIADDRVQGAVFDLPE-EIAKELLNKQ 352
+ S V G L V P E I + + AD GAVFD+ + ++ + Q
Sbjct: 554 ---GKPIYSPSFVYGLLRRVLPDDKVEMIEGLSLTADKT--GAVFDVKQSDLDLFIAGAQ 608
Query: 353 IPPGNTISKITK-LPALQDDGP 373
G+ ++ K +P LQ+ P
Sbjct: 609 KSAGSMSLEVVKVMPKLQEREP 630
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0DM51 | RH3_ORYSJ | 3, ., 6, ., 4, ., 1, 3 | 0.8155 | 0.7825 | 0.5079 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.946 |
| 3rd Layer | 3.6.4 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 492 | |||
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 6e-64 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 3e-49 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 4e-40 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 5e-39 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 1e-38 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 1e-37 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 3e-35 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 2e-34 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 4e-33 | |
| pfam08152 | 97 | pfam08152, GUCT, GUCT (NUC152) domain | 1e-28 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 2e-28 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 2e-27 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 1e-26 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 2e-25 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 2e-19 | |
| cd12938 | 74 | cd12938, GUCT_Hera, RNA-binding GUCT-like domain f | 5e-19 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 1e-15 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 6e-15 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 4e-14 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 2e-13 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 1e-12 | |
| TIGR01389 | 591 | TIGR01389, recQ, ATP-dependent DNA helicase RecQ | 6e-11 | |
| TIGR00614 | 470 | TIGR00614, recQ_fam, ATP-dependent DNA helicase, R | 1e-09 | |
| cd12937 | 86 | cd12937, GUCT_RH7_like, RNA-binding GUCT domain fo | 6e-09 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 9e-09 | |
| TIGR01587 | 358 | TIGR01587, cas3_core, CRISPR-associated helicase C | 1e-08 | |
| TIGR00631 | 655 | TIGR00631, uvrb, excinuclease ABC, B subunit | 6e-08 | |
| COG0556 | 663 | COG0556, UvrB, Helicase subunit of the DNA excisio | 9e-08 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-07 | |
| TIGR00580 | 926 | TIGR00580, mfd, transcription-repair coupling fact | 2e-07 | |
| COG1197 | 1139 | COG1197, Mfd, Transcription-repair coupling factor | 8e-07 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 9e-07 | |
| pfam00098 | 18 | pfam00098, zf-CCHC, Zinc knuckle | 1e-06 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 1e-06 | |
| TIGR00643 | 630 | TIGR00643, recG, ATP-dependent DNA helicase RecG | 2e-06 | |
| cd09639 | 353 | cd09639, Cas3_I, CRISPR/Cas system-associated prot | 2e-06 | |
| smart00343 | 17 | smart00343, ZnF_C2HC, zinc finger | 3e-06 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 7e-06 | |
| COG1200 | 677 | COG1200, RecG, RecG-like helicase [DNA replication | 9e-06 | |
| PRK10689 | 1147 | PRK10689, PRK10689, transcription-repair coupling | 1e-05 | |
| PRK11057 | 607 | PRK11057, PRK11057, ATP-dependent DNA helicase Rec | 2e-05 | |
| PTZ00368 | 148 | PTZ00368, PTZ00368, universal minicircle sequence | 2e-04 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 2e-04 | |
| PRK05580 | 679 | PRK05580, PRK05580, primosome assembly protein Pri | 6e-04 | |
| COG4098 | 441 | COG4098, comFA, Superfamily II DNA/RNA helicase re | 6e-04 | |
| PRK05298 | 652 | PRK05298, PRK05298, excinuclease ABC subunit B; Pr | 0.001 | |
| PRK10917 | 681 | PRK10917, PRK10917, ATP-dependent DNA helicase Rec | 0.001 | |
| TIGR03817 | 742 | TIGR03817, DECH_helic, helicase/secretion neighbor | 0.001 | |
| COG5082 | 190 | COG5082, AIR1, Arginine methyltransferase-interact | 0.002 | |
| PLN03137 | 1195 | PLN03137, PLN03137, ATP-dependent DNA helicase; Q4 | 0.002 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 0.004 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 0.004 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 6e-64
Identities = 100/289 (34%), Positives = 157/289 (54%), Gaps = 12/289 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL+ LPP RQ++LFSATMP +++L+R+YL++P+ I++ + E+ +
Sbjct: 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLK 245
Query: 61 GIKLYAIST-TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
IK + + + K +L L+ +G + IVF +TKR +E++ +L ALH
Sbjct: 246 KIKQFYLEVESEEEKLELLLKLLKDEDEG-RVIVFVRTKRLVEELAESLRKRGFKVAALH 304
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q +R+R L F+ G+ VLVATDVAARGLDIP+V +I+Y+LP DPE +VHR GRT
Sbjct: 305 GDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRT 364
Query: 179 GRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFE-FVSPPVVEDVLESSAEQVVATLNGV 236
GRAG++G AI T + + ++ +E+ + K V P+ E + L
Sbjct: 365 GRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEPEDAKLLKTTRPGLEEE 424
Query: 237 HPESVE-------FFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRS 278
S E + + LA ++ G +
Sbjct: 425 SDISDEIKKLKSSKKALLRGLGVRFTLSKLLANLGKEIPGAGDAVTIDP 473
|
Length = 513 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (445), Expect = 3e-49
Identities = 75/217 (34%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF++ ++ I+ P +RQ++LFSAT P + +S+++ +P+ + V + + A
Sbjct: 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVK-VESTHDLPA- 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + L L+ + + +VF TK++ EV+ AL + ++ ALHG
Sbjct: 217 -IEQRFYEVSPDERLPALQRLLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q R++ L F +VLVATDVAARGLDI ++ +I+YEL DPE VHR GRTG
Sbjct: 275 DLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
RAG +G A+ + + + ++E +G K + P
Sbjct: 335 RAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLP 371
|
Length = 460 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 4e-40
Identities = 84/207 (40%), Positives = 121/207 (58%), Gaps = 8/207 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D+ +L LP KRQ++LFSAT +K L+ K L NPL I++ + +E
Sbjct: 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVA--RRNTASE 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLALTSI-IASEAL 117
+ + KR +LS +I KG + +VFT+TK A+ ++ L I S A+
Sbjct: 219 QVTQHVHFVDKKRKRELLSQMI---GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAI 275
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+ SQ R R L F+ G VLVATD+AARGLDI + +++YELPN PE +VHR GR
Sbjct: 276 HGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGR 335
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLER 204
TGRA G A+ + + + +R +E+
Sbjct: 336 TGRAAATGEALSLVCVDEHKLLRDIEK 362
|
Length = 456 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 5e-39
Identities = 57/119 (47%), Positives = 81/119 (68%), Gaps = 2/119 (1%)
Query: 74 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLN 131
K L +L+ + KGGK ++F +K+ DE++ L I ALHGD SQ +RE L
Sbjct: 13 KLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLK 72
Query: 132 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190
FR+G+ VLVATDV ARG+D+PNV ++I+Y+LP P +++ R GR GRAG++GTAIL+
Sbjct: 73 DFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131
|
Length = 131 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 1e-38
Identities = 73/207 (35%), Positives = 116/207 (56%), Gaps = 4/207 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLA 59
ML +GFE + I+ + P RQ++++SAT P V+ L+R + P++++ VG+ D
Sbjct: 289 MLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVN-VGSLDLTAC 347
Query: 60 EGIKLYAISTTATSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEAL 117
IK KR L L+ + G K ++F +TK+ AD ++ L + +
Sbjct: 348 HNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCI 407
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD Q +R LN F+ GK +++ATDVA+RGLD+ +V +I+++ PN E +VHR GR
Sbjct: 408 HGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGR 467
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLER 204
TGRAG +G + T + R R L +
Sbjct: 468 TGRAGAKGASYTFLTPDKYRLARDLVK 494
|
Length = 545 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 1e-37
Identities = 98/304 (32%), Positives = 153/304 (50%), Gaps = 58/304 (19%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE I+ +P Q+ LFSATMP +++++R+++ P +
Sbjct: 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEV------------ 208
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGK--------------TIVFTQTKRDADEVSL 106
I ++ T++ I TV+ I+F +TK EV+
Sbjct: 209 -----RIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAE 263
Query: 107 ALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 165
AL + S AL+GD++Q RE+TL + G+ +L+ATDVAARGLD+ + L+++Y++P
Sbjct: 264 ALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIP 323
Query: 166 NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP--------- 216
D E++VHR GRTGRAG+ G A+L + +RR +R++ER + V P
Sbjct: 324 MDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRR 383
Query: 217 ------VVEDVLESS-AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 269
V+ LESS +Q A L + P + EE + LAAAL +++
Sbjct: 384 LEKFAAKVQQQLESSDLDQYRALLAKIQPTAEG----------EELDLETLAAALLKMAQ 433
Query: 270 FSRP 273
RP
Sbjct: 434 GERP 437
|
Length = 629 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 3e-35
Identities = 72/209 (34%), Positives = 117/209 (55%), Gaps = 11/209 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+ GF+ + + + LPP Q LFSATMP+ + +L+ K++ +P I LV +DE E
Sbjct: 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRI-LV-KKDELTLE 239
Query: 61 GIKLYAISTTATS-KRTILSDL---ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE 115
GI+ + ++ K L DL +T+ + I++ T+R D ++ +
Sbjct: 240 GIRQFYVAVEKEEWKFDTLCDLYETLTIT----QAIIYCNTRRKVDYLTKKMHERDFTVS 295
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
+HGD+ Q R+ + FR G VL+ TD+ ARG+D+ V L+I+Y+LP PE ++HR
Sbjct: 296 CMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRI 355
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLER 204
GR+GR G++G AI T ++ +ER
Sbjct: 356 GRSGRFGRKGVAINFVTPDDIEQLKEIER 384
|
Length = 401 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 2e-34
Identities = 63/190 (33%), Positives = 111/190 (58%), Gaps = 4/190 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMP-SWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF +D+E I ++Q++LFSAT+ V+ + + L++P+ ++ ++ E+
Sbjct: 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRER-K 217
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
+ + Y + K +L L+ + ++IVF +T+ E++ L I L
Sbjct: 218 KIHQWYYRADDLEHKTALLCHLLK-QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLE 276
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
G++ Q +R + G+ VLVATDVAARG+DI +V +I++++P +T++HR GRT
Sbjct: 277 GEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRT 336
Query: 179 GRAGKEGTAI 188
GRAG++GTAI
Sbjct: 337 GRAGRKGTAI 346
|
Length = 434 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 4e-33
Identities = 73/219 (33%), Positives = 116/219 (52%), Gaps = 6/219 (2%)
Query: 1 MLAVGFEEDVELILENLPPK--RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL 58
ML +GF V I+ P K RQ++LFSAT V L++++ +P +++ +
Sbjct: 249 MLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEI--EPENVA 306
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
++ ++ + + + K +L +L+T + +VF K + + L I + L
Sbjct: 307 SDTVEQHVYAVAGSDKYKLLYNLVT-QNPWERVMVFANRKDEVRRIEERLVKDGINAAQL 365
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
GD+ QH+R +TL GFR+GK VLVATDVA RG+ I + +I++ LP DP+ +VHR GR
Sbjct: 366 SGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGR 425
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
TGRAG G +I + +E +G K PP
Sbjct: 426 TGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPP 464
|
Length = 475 |
| >gnl|CDD|203861 pfam08152, GUCT, GUCT (NUC152) domain | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-28
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 269 GFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328
G++ RSL+ E+G+VTLQLT + +S+ FL D D I + ++
Sbjct: 1 GYTSI-KQRSLLTSEEGYVTLQLTSGRPIPTPSFAWKSLRRFLPD---EKVDSIKGMTLL 56
Query: 329 ADDRVQGAVFDLPEEIAKELLNKQIPP-GNTISKITKLPALQD 370
AD+ QGAVFD+PEE A+E L P G + T+LP LQ+
Sbjct: 57 ADN--QGAVFDVPEEDAEEFLAGWQPAAGVQLEVATELPPLQE 97
|
This is the C terminal domain found in the RNA helicase II / Gu protein family. Length = 97 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-28
Identities = 71/195 (36%), Positives = 109/195 (55%), Gaps = 14/195 (7%)
Query: 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL 58
M +GF +D+ + +PP +R +MLFSAT+ V++L+ ++++NP +++ Q K
Sbjct: 169 MFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ--KT 226
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-- 116
IK + K +L LI + I+F TK +E+ +A++
Sbjct: 227 GHRIKEELFYPSNEEKMRLLQTLIE-EEWPDRAIIFANTKHRCEEI----WGHLAADGHR 281
Query: 117 ---LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
L GD++Q +R R L F +G +LVATDVAARGL IP V + +Y+LP+D E +VH
Sbjct: 282 VGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVH 341
Query: 174 RSGRTGRAGKEGTAI 188
R GRTGRAG G +I
Sbjct: 342 RIGRTGRAGASGHSI 356
|
Length = 423 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-27
Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 112 IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETF 171
I LHG +SQ +RE L FR GK VLVATDVA RG+D+P+V+L+I+Y+LP +P ++
Sbjct: 8 IKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDLPWNPASY 67
Query: 172 VHRSGRTGRAG 182
+ R GR GRAG
Sbjct: 68 IQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-26
Identities = 71/191 (37%), Positives = 110/191 (57%), Gaps = 6/191 (3%)
Query: 1 MLAVGFEEDVELILENLPPK--RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL 58
M +GF +D+ +L +P + RQ++LFSAT+ V +L+ ++++ P LV +
Sbjct: 171 MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEK--LVVETETIT 228
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
A ++ K+T+L L++ ++G +T+VF TK + V+ L L
Sbjct: 229 AARVRQRIYFPADEEKQTLLLGLLS-RSEGARTMVFVNTKAFVERVARTLERHGYRVGVL 287
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
GD+ Q +RE LN F++G+ +LVATDVAARGL I V + +Y+LP D E +VHR GR
Sbjct: 288 SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR 347
Query: 178 TGRAGKEGTAI 188
T R G+EG AI
Sbjct: 348 TARLGEEGDAI 358
|
Length = 572 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 2e-25
Identities = 42/82 (51%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 102 DEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160
+E++ L + I LHG +SQ +RE L+ F GK VLVATDVA RGLD+P VDL+I
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVI 60
Query: 161 HYELPNDPETFVHRSGRTGRAG 182
Y+LP P +++ R GR GRAG
Sbjct: 61 IYDLPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 2e-19
Identities = 60/200 (30%), Positives = 103/200 (51%), Gaps = 6/200 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML GF + V I + L + Q +LFSAT+ V+K + + + I +GN + + +
Sbjct: 282 MLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILIS-IGNPN-RPNK 338
Query: 61 GIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTSIIASEAL-- 117
+K AI K+ L D++ +VF ++ AD ++ A+T + +AL
Sbjct: 339 AVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSI 398
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+ S +R + F G+ V+VAT V RG+D+ V +I +++PN + ++H+ GR
Sbjct: 399 HGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGR 458
Query: 178 TGRAGKEGTAILMFTSSQRR 197
R G++GTAI+ R
Sbjct: 459 ASRMGEKGTAIVFVNEEDRN 478
|
Length = 518 |
| >gnl|CDD|240595 cd12938, GUCT_Hera, RNA-binding GUCT-like domain found in Thermus thermophilus heat resistant RNA-dependent ATPase (Hera) and similar proteins | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 5e-19
Identities = 42/81 (51%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 276 SRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQG 335
RSL+ E+GW TLQLT S R +G LS AAD +GKI I+AD G
Sbjct: 1 PRSLLTGEEGWTTLQLTGSR--LLPPGSVRRAVGLLSRA---AADGVGKIRILAD--AGG 53
Query: 336 AVFDLPEEIAKELLNKQIPPG 356
AVFDLPEEIAKELL K G
Sbjct: 54 AVFDLPEEIAKELLAKSDLDG 74
|
This subfamily corresponds to the Gu C-terminal (GUCT)-like domain of Hera and similar proteins. Thermus thermophilus Hera is a DEAD box helicase that binds fragments of 23S rRNA and RNase P RNA via its C-terminal domain. It contains a helicase core that harbors two RecA-like domains termed RecA_N and RecA_C, a dimerization domain (DD), and a C-terminal RNA-binding domain (RBD) that reveals a compact, RRM-like fold and shows sequence similarity with GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and plant DEAD-box ATP-dependent RNA helicase 7 (RH7 or PRH75). Length = 74 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-15
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 11/120 (9%)
Query: 87 KGGKTIVFTQTKRDADEVSLALTSI--------IASEALHGD--ISQHQRERTLNGFRQG 136
+ IVFT+ + A+E+ L I I + GD +SQ +++ ++ FR+G
Sbjct: 365 GDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKG 424
Query: 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196
++ VLVAT V GLDIP VDL+I YE + R GRTGR ++G +++ T R
Sbjct: 425 EYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR-KRKGRVVVLVTEGTR 483
|
Length = 542 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 6e-15
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 22/131 (16%)
Query: 87 KGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD--------ISQHQRERTLNGFRQGK 137
+ IVFTQ + A+++ L I + G +SQ ++ L+ FR G+
Sbjct: 364 PDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE 423
Query: 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPET-FVHRSGRTGRAGKEGTA-ILM----- 190
F VLV+T VA GLDIP+VDL+I YE P E + R GRTGR +EG +L+
Sbjct: 424 FNVLVSTSVAEEGLDIPSVDLVIFYE-PVPSEIRSIQRKGRTGR-QEEGRVVVLIAKGTR 481
Query: 191 ----FTSSQRR 197
+ SS+R+
Sbjct: 482 DEAYYWSSRRK 492
|
Length = 773 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 4e-14
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 2/165 (1%)
Query: 38 SRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 97
R+Y + L + I+ + K + L+ +A+G KT++F
Sbjct: 233 EREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASD 292
Query: 98 KRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157
A E++ + EA+ G+ + +RE L FR G VLV V G+DIP+ D
Sbjct: 293 VEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDAD 352
Query: 158 LIIHYELPNDPETFVHRSGRTGRA--GKEGTAILMFTSSQRRTVR 200
++I F+ R GR R GKE T L ++
Sbjct: 353 VLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGE 397
|
Length = 442 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 2e-13
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNI 48
ML +GFE+ + IL+ LP RQ++LFSATMP V+ L+RK+L NP+ I
Sbjct: 155 MLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 86 AKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144
I++ T++ +E++ L + I++ A H +S +RER F + V+VAT
Sbjct: 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVAT 287
Query: 145 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202
+ G+D P+V +IHY+LP E++ +GR GR G AIL+++ R R L
Sbjct: 288 NAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYL 345
|
Length = 590 |
| >gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 6e-11
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 92 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150
I++ +++ +E++ L S I++ A H +S R F V+VAT+ G
Sbjct: 228 IIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMG 287
Query: 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193
+D PNV +IHY++P + E++ +GR GR G AIL+++
Sbjct: 288 IDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSP 330
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ [DNA metabolism, DNA replication, recombination, and repair]. Length = 591 |
| >gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 87 KGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145
KG I++ +++ +++V+ +L ++ IA+ A H + R+ + F++ + V+VAT
Sbjct: 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV 284
Query: 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202
G++ P+V +IHY LP E++ SGR GR G L + + +R L
Sbjct: 285 AFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRL 341
|
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470 |
| >gnl|CDD|240594 cd12937, GUCT_RH7_like, RNA-binding GUCT domain found in plant DEAD-box ATP-dependent RNA helicase 7 (RH7) and similar proteins | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 6e-09
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 277 RSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQG 335
RSL+ +G+ TL L + S V L P + I + + AD + G
Sbjct: 1 RSLLTSHEGYTTLLLK----SNTPIRSPGYVWNALRRYLPEDIVESIKGMTLTADGK--G 54
Query: 336 AVFDLPEEIAKELLNKQIP-PGNTISKITKLP 366
AVFD+P E+ +E L+ + G T+ T+LP
Sbjct: 55 AVFDVPSELIEEFLSAWVDKRGVTLEVATELP 86
|
This subfamily corresponds to the Gu C-terminal (GUCT) domain of RH7 and similar proteins. RH7, also termed plant RNA helicase 75 (PRH75), is a new nucleus-localized member of the DEAD-box protein family from higher plants. It displays a weak ATPase activity which is barely stimulated by RNA ligands. RH7 contains an N-terminal KDES domain rich in lysine, glutamic acid, aspartic acid, and serine residues, seven highly conserved helicase motifs in the central region, a GUCT domain, and a C-terminal GYR domain harboring a large number of glycine residues interrupted by either arginines or tyrosines. RH7 is RNA specific and harbors two possible RNA-binding motifs, the helicase motif VI (HRIGRTGR) and the C-terminal glycine-rich GYR domain. Length = 86 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 90 KTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147
T++FT T+ A+ ++ L + E HG +S+ R ++G+ +VAT
Sbjct: 255 TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSL 314
Query: 148 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
G+DI ++DL+I P F+ R GR G
Sbjct: 315 ELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGH 347
|
Length = 814 |
| >gnl|CDD|233483 TIGR01587, cas3_core, CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 13 ILENLPPKRQS-MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA 71
+LE L +L SAT+P ++K+ + K + + ++E+ E + I +
Sbjct: 147 VLEVLKDNDVPILLMSATLPKFLKEYAEKI-GYVEFNEPLDLKEERRFERHRFIKIESDK 205
Query: 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA---LHGDISQHQRER 128
+ + L L+ KGGK + T A E L E LH ++ R +
Sbjct: 206 VGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAK 265
Query: 129 ----TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183
L ++ + V+VAT V LDI + D++I P D + + R GR R G+
Sbjct: 266 KEAELLEEMKKNEKFVIVATQVIEASLDI-SADVMITELAPID--SLIQRLGRLHRYGR 321
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model [Mobile and extrachromosomal element functions, Other]. Length = 358 |
| >gnl|CDD|233063 TIGR00631, uvrb, excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Query: 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQ 135
+LS++ A+ + +V T TK+ A++++ L + I LH +I +R + R
Sbjct: 431 LLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL 490
Query: 136 GKFTVLVATDVAARGLDIPNVDLI-IHYELPNDPETFVHRSGRT-----GRAGK--EGTA 187
G+F VLV ++ GLD+P V L+ I L D E F+ RS R+ GRA + G
Sbjct: 491 GEFDVLVGINLLREGLDLPEVSLVAI---LDADKEGFL-RSERSLIQTIGRAARNVNGKV 546
Query: 188 ILM---FTSSQRRTVRSLER 204
I+ T S ++ + ER
Sbjct: 547 IMYADKITDSMQKAIEETER 566
|
All proteins in this family for wich functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 655 |
| >gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 9e-08
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQ 135
+LS++ AK + +V T TK+ A++++ L + I LH DI +R + R
Sbjct: 435 LLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL 494
Query: 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT-----GRAGK--EGTAI 188
G+F VLV ++ GLD+P V L+ L D E F+ RS R+ GRA + G I
Sbjct: 495 GEFDVLVGINLLREGLDLPEVSLVA--ILDADKEGFL-RSERSLIQTIGRAARNVNGKVI 551
Query: 189 L---MFTSSQRRTVRSLER 204
L T S ++ + ER
Sbjct: 552 LYADKITDSMQKAIDETER 570
|
Length = 663 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKL 37
+L +GF +D+E IL LPP RQ +L SAT+P ++ L
Sbjct: 133 LLDMGFGDDLEEILSRLPPDRQILLLSATLPRNLEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|233032 TIGR00580, mfd, transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETF----V 172
HG +++++ E + F +G+F VLV T + G+DIPN + II + F +
Sbjct: 692 AHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTII----IERADKFGLAQL 747
Query: 173 HR-SGRTGRAGKEGTAILMFTSSQRRTVRSLER 204
++ GR GR+ K+ A L++ + T + +R
Sbjct: 748 YQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKR 780
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families [DNA metabolism, DNA replication, recombination, and repair]. Length = 926 |
| >gnl|CDD|224118 COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS-- 175
HG + + + E + F G++ VLV T + G+DIPN + II + R+
Sbjct: 836 HGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTII-----------IERADK 884
Query: 176 ----------GRTGRAGKEGTAILMFTSSQRRTVRSLER 204
GR GR+ K+ A ++ + T + +R
Sbjct: 885 FGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKR 923
|
Length = 1139 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 9e-07
Identities = 46/196 (23%), Positives = 74/196 (37%), Gaps = 32/196 (16%)
Query: 83 TVYAKG--GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFT 139
T +KG G+TIVFT ++R E++ ALT + + H + +R+ F +
Sbjct: 433 TESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELA 492
Query: 140 VLVATDVAARGLDIPNVDLIIH-YELPND---PETFVHRSGRTGRAG--KEGTAILM--- 190
+V T A G+D P +I + + F GR GR G L+
Sbjct: 493 AVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552
Query: 191 ---FTSSQRRTVRSLERDVGCKFEFVSPP---VVEDVLESSAEQVVAT---------LNG 235
+ +S T E +V K S P +VE E E V+A+ +
Sbjct: 553 GKKYHASMEET----EDEVAFKL-LESEPEPVIVEYDEEDEEENVLASAGVTNSLSVIER 607
Query: 236 VHPESVEFFTPTAQRL 251
V+ + + L
Sbjct: 608 VNSLMLGAAFDPKKAL 623
|
Length = 830 |
| >gnl|CDD|189387 pfam00098, zf-CCHC, Zinc knuckle | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-06
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 475 GACFNCGKSGHRASECPN 492
C+NCGK GH A +CP
Sbjct: 1 RKCYNCGKEGHLARDCPE 18
|
The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger. Length = 18 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNID 49
+L GF + +E +L+ LP Q +L SAT P ++ L +L++P+ ID
Sbjct: 141 LLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFID 189
|
Length = 201 |
| >gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 17/112 (15%)
Query: 99 RDADEVSLALTSIIASEA---LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155
+ A+ + L LHG + ++E + FR+G+ +LVAT V G+D+PN
Sbjct: 467 KAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526
Query: 156 VDLIIHYELPNDPETF----VHR-SGRTGRAGKEGTAILMF-----TSSQRR 197
+++ D E F +H+ GR GR + +L++ S+++R
Sbjct: 527 ATVMVIE----DAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKR 574
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 630 |
| >gnl|CDD|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3 | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 17/180 (9%)
Query: 13 ILENLPPKRQS-MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA 71
+LE L +L SAT+P ++K+ + K + + + + A IK+ +
Sbjct: 146 VLEVLKDNDVPILLMSATLPKFLKEYAEKI-GYVEENEPLDLKPNERAPFIKIESDKV-- 202
Query: 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA---LHGDISQHQRER 128
+ + L L+ KGG + T A E L E +H ++ R +
Sbjct: 203 -GEISSLERLLEFIKKGGSVAIIVNTVDRAQEFYQQLKEKGPEEEIMLIHSRFTEKDRAK 261
Query: 129 -----TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183
L + KF V+VAT V LDI +VD++I P D + + R GR R G+
Sbjct: 262 KEAELLLEFKKSEKF-VIVATQVIEASLDI-SVDVMITELAPID--SLIQRLGRLHRYGE 317
|
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I. Length = 353 |
| >gnl|CDD|197667 smart00343, ZnF_C2HC, zinc finger | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 3e-06
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 477 CFNCGKSGHRASECPN 492
C+NCGK GH A +CP+
Sbjct: 2 CYNCGKEGHIARDCPS 17
|
Length = 17 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 19/170 (11%)
Query: 68 STTATSKRTILSDLITVYAKGG-KTIVFTQTKRDADEVSLALTSIIASEALHGDISQH-- 124
+ S L+ L + + G +T+VF ++++ +V L S G
Sbjct: 285 ESIRRSALAELATLAALLVRNGIQTLVFFRSRK---QVELLYLSPRRRLVREGGKLLDAV 341
Query: 125 ----------QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET-FVH 173
+R R F++G+ ++AT+ G+DI ++D +I Y P F
Sbjct: 342 STYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQ 401
Query: 174 RSGRTGRAGKEGTAILMFTSS--QRRTVRSLERDVGCKFEFVSPPVVEDV 221
R+GR GR G+E +++ S +R E + F V V+D
Sbjct: 402 RAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLETGFGPVESVRVDDN 451
|
Length = 851 |
| >gnl|CDD|224121 COG1200, RecG, RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 9e-06
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 99 RDADEVSLALTSIIASEA---LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155
+ A+E+ L S + +HG + +++ + F++G+ +LVAT V G+D+PN
Sbjct: 492 QAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPN 551
Query: 156 VDLIIHYELPNDPETF----VH--RSGRTGRAGKEGTAILMFTS 193
+++ + E F +H R GR GR + +L++
Sbjct: 552 ATVMVIE----NAERFGLAQLHQLR-GRVGRGDLQSYCVLLYKP 590
|
Length = 677 |
| >gnl|CDD|182649 PRK10689, PRK10689, transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 21/108 (19%)
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII-----HYELPNDPETFV 172
HG + + + ER +N F +F VLV T + G+DIP + II H+ L +
Sbjct: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ-----L 896
Query: 173 HR-SGRTGRAGKEGTAIL-------MFTSSQRR--TVRSLERDVGCKF 210
H+ GR GR+ + A L M T +Q+R + SLE D+G F
Sbjct: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE-DLGAGF 943
|
Length = 1147 |
| >gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 87 KGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145
+G I++ ++ ++ + L S I++ A H + R F++ ++VAT
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV 294
Query: 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 191
G++ PNV ++H+++P + E++ +GR GR G A+L +
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
|
Length = 607 |
| >gnl|CDD|173561 PTZ00368, PTZ00368, universal minicircle sequence binding protein (UMSBP); Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 464 SRSSSRDRSFGG--ACFNCGKSGHRASECPN 492
SR G +C+NCGK+GH + ECP
Sbjct: 40 SRECPSAPGGRGERSCYNCGKTGHLSRECPE 70
|
Length = 148 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG +S+ QR T + G+ +VAT G+D+ VDL+I P + + R GR
Sbjct: 308 HGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGR 367
Query: 178 TGRAGKEGTAILMFTSSQRRTVRS---LERDVGCKFEFVSPPVVEDVLESSAEQVVATLN 234
G + L F ++R V S +E + E ++PP + L+ A+Q VA
Sbjct: 368 AGHQVGGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPP--HNPLDVLAQQTVAAA- 424
Query: 235 GVHPESVEFFTPTAQR 250
+ V+ + +R
Sbjct: 425 AMDALQVDEWYSRVRR 440
|
Length = 1490 |
| >gnl|CDD|235514 PRK05580, PRK05580, primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 22/80 (27%)
Query: 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNV--------DLIIHYELPNDP----ETF--- 171
E+ L F +G+ +L+ T + A+G D PNV DL + D TF
Sbjct: 470 EQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS---PDFRASERTFQLL 526
Query: 172 --VHRSGRTGRAGKEGTAIL 189
V +GR GRA K G ++
Sbjct: 527 TQV--AGRAGRAEKPGEVLI 544
|
Length = 679 |
| >gnl|CDD|226583 COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 122 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL-IIHYELPN-DPETFVHRSGRTG 179
QH++E+ + FR GK T+L+ T + RG+ PNVD+ ++ E V +GR G
Sbjct: 341 DQHRKEK-VEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVG 399
Query: 180 RAGKEGTAILMF 191
R+ + T ++F
Sbjct: 400 RSLERPTGDVLF 411
|
Length = 441 |
| >gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 0.001
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 13/113 (11%)
Query: 86 AKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144
AKG + +V T TKR A++++ L + I LH DI +R + R G+F VLV
Sbjct: 444 AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI 503
Query: 145 DVAARGLDIPNVDLI-IHYELPNDPETFVHRSGRT-----GRAGK--EGTAIL 189
++ GLDIP V L+ I L D E F+ RS R+ GRA + G IL
Sbjct: 504 NLLREGLDIPEVSLVAI---LDADKEGFL-RSERSLIQTIGRAARNVNGKVIL 552
|
Length = 652 |
| >gnl|CDD|236794 PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.001
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETF----V 172
LHG + +++ + F+ G+ +LVAT V G+D+PN +++ + E F +
Sbjct: 511 LHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIE----NAERFGLAQL 566
Query: 173 H--RSGRTGRAGKEGTAILM 190
H R GR GR + +L+
Sbjct: 567 HQLR-GRVGRGAAQSYCVLL 585
|
Length = 681 |
| >gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 19/145 (13%)
Query: 59 AEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLA----LTSIIA 113
G + +A+++ +L+DL+ A+G +T+ F +++R A+ V+ L +
Sbjct: 244 LTGENGAPVRRSASAEAADLLADLV---AEGARTLTFVRSRRGAELVAAIARRLLGEVDP 300
Query: 114 SEALH------GDISQHQR--ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 165
A G + + +R ER L R G+ + T+ G+DI +D ++ P
Sbjct: 301 DLAERVAAYRAGYLPEDRRELERAL---RDGELLGVATTNALELGVDISGLDAVVIAGFP 357
Query: 166 NDPETFVHRSGRTGRAGKEGTAILM 190
+ ++GR GR G+ +L+
Sbjct: 358 GTRASLWQQAGRAGRRGQGALVVLV 382
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. Length = 742 |
| >gnl|CDD|227414 COG5082, AIR1, Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 15/66 (22%)
Query: 426 EDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGH 485
E+ S+ RS RS R+ S +D S R CFNCG++GH
Sbjct: 27 EESSSNPNELRSLRSS----GRYEDRSVED-----------VSAIREENPVCFNCGQNGH 71
Query: 486 RASECP 491
+CP
Sbjct: 72 LRRDCP 77
|
Length = 190 |
| >gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 92 IVFTQTKRDADEVSLALTSIIASEAL-HGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150
I++ ++ D ++V+ L A HG + QR + + + ++ AT G
Sbjct: 684 IIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMG 743
Query: 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 194
++ P+V +IH+ LP E + GR GR G+ + +L ++ S
Sbjct: 744 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYS 787
|
Length = 1195 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 91 TIVFTQTKRDADEVSLALTSIIASEAL-----HGDISQHQRERTLNGFRQGKFTVLVATD 145
T+VFT T+ A+ AL AL HG + + QR G+ +V T
Sbjct: 250 TLVFTNTRSQAELWFQALWEANPEFALPIALHHGSLDREQRRWVEAAMAAGRLRAVVCTS 309
Query: 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG-RAGKEGTAILMFTSS 194
G+D VDL+I P + R+GR+ R G+ A+L+ T+
Sbjct: 310 SLDLGVDFGPVDLVIQIGSPKGVARLLQRAGRSNHRPGEPSRALLVPTNR 359
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 47/207 (22%), Positives = 79/207 (38%), Gaps = 48/207 (23%)
Query: 87 KGGKTIVFTQTKRDADEVSLALTSIIAS---------------------------EALHG 119
KG +VF T+R A++ +L L I +AL G
Sbjct: 237 KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRG 296
Query: 120 DISQH-----QRERTL--NGFRQGKFTVLVATDVAARGLDIPNVDLII-------HYELP 165
++ H + ER L + FR+G V+ AT + G+++P +II ++
Sbjct: 297 GVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWE 356
Query: 166 NDPETFVHRS-GRTGRA--GKEGTAILMFTSSQRRTVRSLERDVGCKFE-FVSPPVVEDV 221
+ P + + GR GR + G AI++ T+ + + +ER + K E S E
Sbjct: 357 DIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKL--MERYIFGKPEKLFSMLSNESA 414
Query: 222 LESSAEQVVATLN-GVHPESVEFFTPT 247
S ++ E V F T
Sbjct: 415 FRSQVLALITNFGVSNFKELVNFLERT 441
|
Length = 720 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 492 | |||
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.98 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.97 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.97 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.97 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.96 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.95 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.95 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.95 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.95 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.94 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.94 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.94 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.93 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.93 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.92 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.91 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.91 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.9 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.9 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.9 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.9 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.89 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.89 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.88 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.87 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.87 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.87 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.86 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.86 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.86 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.85 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.84 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.81 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.81 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.81 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.8 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.78 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.78 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.78 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.78 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.77 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.77 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.77 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.76 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.75 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.75 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.74 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.71 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.71 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.71 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.69 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.69 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.69 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.68 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.68 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.67 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.65 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.65 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.64 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.63 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.62 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.57 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.57 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.54 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.54 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.54 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.54 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.53 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.5 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.5 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.49 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.46 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.45 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.44 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.44 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.44 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.39 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.39 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.39 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.38 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.36 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.35 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.33 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.27 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.26 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.24 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.22 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 99.14 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.13 | |
| PF08152 | 97 | GUCT: GUCT (NUC152) domain; InterPro: IPR012562 Th | 99.07 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.04 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.04 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.02 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 98.9 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 98.87 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 98.85 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.84 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 98.83 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 98.82 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 98.78 | |
| PF00098 | 18 | zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi | 98.75 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 98.72 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 98.7 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 98.67 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 98.66 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 98.64 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 98.6 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 98.6 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 98.59 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.58 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 98.58 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 98.55 | |
| PF03880 | 74 | DbpA: DbpA RNA binding domain ; InterPro: IPR00558 | 98.53 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 98.47 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 98.45 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 98.38 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 98.36 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.35 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 98.34 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 98.32 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 98.32 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 98.27 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.22 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.21 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 98.21 | |
| PTZ00110 | 545 | helicase; Provisional | 98.18 | |
| PTZ00368 | 148 | universal minicircle sequence binding protein (UMS | 98.18 | |
| PTZ00368 | 148 | universal minicircle sequence binding protein (UMS | 98.15 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 98.14 | |
| COG5082 | 190 | AIR1 Arginine methyltransferase-interacting protei | 98.11 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.05 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 98.05 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.04 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 98.01 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 97.98 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 97.94 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 97.91 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 97.91 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 97.9 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 97.9 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 97.89 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 97.86 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 97.85 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 97.82 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 97.78 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 97.75 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 97.74 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 97.73 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 97.66 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 97.64 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 97.54 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 97.53 | |
| PF13696 | 32 | zf-CCHC_2: Zinc knuckle | 97.53 | |
| KOG3973 | 465 | consensus Uncharacterized conserved glycine-rich p | 97.52 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 97.48 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 97.45 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 97.44 | |
| KOG4400 | 261 | consensus E3 ubiquitin ligase interacting with arg | 97.43 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 97.39 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 97.39 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 97.39 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 97.34 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 97.34 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 97.25 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 97.23 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.2 | |
| PF13917 | 42 | zf-CCHC_3: Zinc knuckle | 97.13 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 97.08 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 97.01 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 96.97 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 96.96 | |
| PF14787 | 36 | zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: | 96.92 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 96.92 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 96.85 | |
| smart00343 | 26 | ZnF_C2HC zinc finger. | 96.8 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 96.77 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 96.73 | |
| COG5082 | 190 | AIR1 Arginine methyltransferase-interacting protei | 96.72 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 96.67 | |
| PTZ00424 | 401 | helicase 45; Provisional | 96.67 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 96.64 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 96.63 | |
| KOG0109 | 346 | consensus RNA-binding protein LARK, contains RRM a | 96.5 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 96.5 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 96.46 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 96.4 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 96.35 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 96.33 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 96.29 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 96.25 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 96.23 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 96.14 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 96.11 | |
| KOG4400 | 261 | consensus E3 ubiquitin ligase interacting with arg | 96.05 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 96.03 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 95.8 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 95.72 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 95.63 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 95.45 | |
| PF00098 | 18 | zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi | 95.34 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 95.28 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 95.11 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 94.98 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 94.97 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 94.86 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 94.63 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 94.52 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 94.15 | |
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 93.99 | |
| KOG3973 | 465 | consensus Uncharacterized conserved glycine-rich p | 93.93 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 93.78 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 93.65 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 93.57 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 93.41 | |
| KOG0119 | 554 | consensus Splicing factor 1/branch point binding p | 93.31 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 93.15 | |
| PF14392 | 49 | zf-CCHC_4: Zinc knuckle | 92.86 | |
| PF15288 | 40 | zf-CCHC_6: Zinc knuckle | 92.46 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 92.1 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 90.71 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 89.46 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 89.18 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 88.43 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 88.29 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 87.9 | |
| KOG0107 | 195 | consensus Alternative splicing factor SRp20/9G8 (R | 86.17 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 85.72 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 85.07 | |
| PF12683 | 275 | DUF3798: Protein of unknown function (DUF3798); In | 84.89 | |
| PF10593 | 239 | Z1: Z1 domain; InterPro: IPR018310 This entry repr | 84.45 | |
| KOG0107 | 195 | consensus Alternative splicing factor SRp20/9G8 (R | 82.56 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 81.36 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 80.35 |
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-52 Score=444.10 Aligned_cols=344 Identities=29% Similarity=0.470 Sum_probs=298.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||+|||.++++.|+..+|...|+++||||+|+.+..++++|+.+|..|.+.. .......+.+.++.+....|.+.|..
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~--~~~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccC--ccccCCceEEEEEEechhhHHHHHHH
Confidence 7899999999999999999999999999999999999999999998887653 23345667788888877788888888
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++... ...++||||+|+..++.|++.|.. .+.+..+||+|++.+|++++++|++|+++|||||+++++|||+|+|++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 88764 457899999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHhccCC-c
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH-P 238 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~-~ 238 (492)
||||+|.++++|+||+|||||+|+.|.+++|+.+.|...++.|++.++..+++..+|..+++.+.....+...+.... .
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 397 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLES 397 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999998888887777777665432 3
Q ss_pred cchhhhHHHHHHHHhh-----hCHHHHHHHHHHHcCCCCC------C-----C---Ccc-----------------c--c
Q 011149 239 ESVEFFTPTAQRLIEE-----KGTDALAAALAQLSGFSRP------P-----S---SRS-----------------L--I 280 (492)
Q Consensus 239 ~~~~~f~~~a~~l~~~-----~~~~~l~~al~~~~~~~~~------~-----~---~~~-----------------l--~ 280 (492)
+.++.|.+.+++++++ .+.+.++++|+.+.--..+ + + .+. . .
T Consensus 398 ~~~~~~~~~~~~l~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (629)
T PRK11634 398 SDLDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 (629)
T ss_pred hhHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 4577788888888864 6789999999998632111 0 0 000 0 0
Q ss_pred c---CCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeecCccceeEeecCHHHHHHHHhhcCC
Q 011149 281 N---HEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (492)
Q Consensus 281 ~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~~~~ 354 (492)
. ...+|++++++.++ ++++.|++|+++|++..++...+||+|+|++++ ||||||++.++++++.+..
T Consensus 478 ~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~----s~v~~~~~~~~~~~~~~~~ 547 (629)
T PRK11634 478 RERRDVGDMQLYRIEVGR---DDGVEVRHIVGAIANEGDISSRYIGNIKLFASH----STIELPKGMPGEVLQHFTR 547 (629)
T ss_pred cccccCCCCEEEEEeccc---ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCCc----eEEEcChhhHHHHHHHhcc
Confidence 0 12268999999998 899999999999999999999999999999998 8999999999999997654
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=362.09 Aligned_cols=206 Identities=45% Similarity=0.725 Sum_probs=190.4
Q ss_pred CCCCChHHHHHHHHHhC-CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHH
Q 011149 1 MLAVGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~-~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (492)
||||||.++|+.|+.++ ++.+|+|+||||+|.|++.++..||.+|..|++..........++.|....+++..|...|.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 56679999999999999999999999999998875545566788899999999999999999
Q ss_pred HHHHHHc--cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCc
Q 011149 80 DLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (492)
Q Consensus 80 ~ll~~~~--~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v 156 (492)
.+|..+. +..++||||+|++.|++|+..|.. .+.+.+|||+++|.+|+.+|+.|++|+..||||||+|+||||||+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 9998884 456999999999999999999997 6999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHh
Q 011149 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (492)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (492)
++|||||+|.++++|+||+|||||++++|.+++|++..+......+.+.+
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877666665443
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=314.31 Aligned_cols=213 Identities=35% Similarity=0.603 Sum_probs=198.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCccc-HHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~ 79 (492)
||+.||.+++-.|++++|+..|++++|||+|.+|.+..++|+.+|+.|-+. +.+.+.+.|+++++.+..++ |.+.|.
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvk--rdeltlEgIKqf~v~ve~EewKfdtLc 258 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVK--RDELTLEGIKQFFVAVEKEEWKFDTLC 258 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEe--cCCCchhhhhhheeeechhhhhHhHHH
Confidence 789999999999999999999999999999999999999999999887543 55666778999999987765 999999
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
+|.+.+. -.+++|||||+..++.|.+.++. .+.|..+||+|+|++|+++++.||+++.+|||+||+.+||||+|.|++
T Consensus 259 dLYd~Lt-ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVsl 337 (400)
T KOG0328|consen 259 DLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSL 337 (400)
T ss_pred HHhhhhe-hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEE
Confidence 9888774 36899999999999999999996 789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
|||||+|.+.+.|+||+||.||.|++|.++-|+...+.+.++.+|+++...+.++++.
T Consensus 338 viNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 338 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred EEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 9999999999999999999999999999999999999999999999999988877654
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=354.81 Aligned_cols=218 Identities=43% Similarity=0.735 Sum_probs=198.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCccc-HHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~ 79 (492)
||||||.++|+.|++.+|.++|+++||||||..+..+++.|+++|..|.+.......+...+.|+++.+.... |..+|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999888764444447788999999998876 999999
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
.+++... ..++||||+|+..|+.|+..|.. ++.+..|||+|+|++|.++++.|++|+++||||||+++||||||+|++
T Consensus 266 ~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 9998763 45899999999999999999996 799999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChh-hHHHHHHHHHHhCCCce-ecCCCCHH
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFE-FVSPPVVE 219 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~-~~~~p~~~ 219 (492)
|||||+|.+++.|+||+|||||+|++|.+++|+.+. |...+..+++.+...++ ...+|...
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~ 407 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDE 407 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcch
Confidence 999999999999999999999999999999999986 89999999999877755 44445433
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=327.85 Aligned_cols=228 Identities=35% Similarity=0.541 Sum_probs=203.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcC-CCceEEeecccccccccceEEEEEEcCcccHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (492)
+|||||+++|+.|++.+|+.+|++|||||+|+.|+++++-.|+ +|..|+++......+.+.++|-|+.++...++.++.
T Consensus 242 lLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~ 321 (543)
T KOG0342|consen 242 LLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLY 321 (543)
T ss_pred hhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHH
Confidence 5899999999999999999999999999999999999998887 588999988888888899999899998888888888
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
.+|+.+....++||||+|...+..+++.|.. .++|..+||.++|..|..+..+|++.+.-|||||||+|||+|+|+|++
T Consensus 322 ~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~ 401 (543)
T KOG0342|consen 322 TFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDW 401 (543)
T ss_pred HHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceE
Confidence 8888876668999999999999999999995 789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHH-HHHHHHHHHHHH
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE-DVLESSAEQVVA 231 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~ 231 (492)
||+||+|.++++||||+|||||.|++|.+++++.|.|..++++|+ ..++++.+.|..+ +.++...+.++.
T Consensus 402 VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~~~~~v~~~~~~li~ 472 (543)
T KOG0342|consen 402 VVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPLKPEDVQSQLEKLIS 472 (543)
T ss_pred EEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 4455555555432 333344444443
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=319.57 Aligned_cols=213 Identities=36% Similarity=0.591 Sum_probs=199.5
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
+|||.|.++|+.||+.+|.++|++|||||||+.+.++...-+++|+.|.+. ....+.++++++|+.++...|...|..
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s--~ky~tv~~lkQ~ylfv~~k~K~~yLV~ 293 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVS--SKYQTVDHLKQTYLFVPGKDKDTYLVY 293 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEecc--chhcchHHhhhheEeccccccchhHHH
Confidence 589999999999999999999999999999999999999999999988764 455677889999999999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
||+.. ....+||||+|...++.++-.|.. ++.+..|||+|+|..|...++.|+++...||||||+++||+|||.|++|
T Consensus 294 ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~V 372 (476)
T KOG0330|consen 294 LLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVV 372 (476)
T ss_pred HHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEE
Confidence 99876 458999999999999999999996 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
||||+|.+..+||||+|||+|+|++|.+|.|++..|.+.+++||..++.+.....++
T Consensus 373 VNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~ 429 (476)
T KOG0330|consen 373 VNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVD 429 (476)
T ss_pred EecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcc
Confidence 999999999999999999999999999999999999999999999999887655444
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=326.06 Aligned_cols=201 Identities=40% Similarity=0.644 Sum_probs=183.0
Q ss_pred CCCCChHHHHHHHHHhCCC---C----------------------CcEEEEeeeCChHHHHHHHHHcCCCceEEeecccc
Q 011149 1 MLAVGFEEDVELILENLPP---K----------------------RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD 55 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~---~----------------------~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~ 55 (492)
|+||||.+|+..||.++|. . +|+++||||||+.+..|++.||++|+.+.+- ..
T Consensus 408 miDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig--~~ 485 (673)
T KOG0333|consen 408 MIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIG--SA 485 (673)
T ss_pred hhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEec--cC
Confidence 8999999999999999983 1 7999999999999999999999999998764 34
Q ss_pred cccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhc
Q 011149 56 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 134 (492)
Q Consensus 56 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~ 134 (492)
....+.++|.++.+...+|...|..+|+.. ...++|||+|+++.|+.|++.|.+ .+.+..|||+-+|++|+.+|+.|+
T Consensus 486 gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr 564 (673)
T KOG0333|consen 486 GKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFR 564 (673)
T ss_pred CCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHH
Confidence 455677888888888888999999988876 457999999999999999999997 899999999999999999999999
Q ss_pred CCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 135 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 135 ~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
.+..+||||||+++||||||+|++|||||++.+.++|+||+|||||+|+.|+++.|+++.+...+..|.+
T Consensus 565 ~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq 634 (673)
T KOG0333|consen 565 EGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQ 634 (673)
T ss_pred hcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988554444433
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=327.65 Aligned_cols=285 Identities=31% Similarity=0.496 Sum_probs=245.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||++||..+++.|++.+|..+|+++||||+|+.+..+++.++.+|..+.+... .....+.++++.++...|...|..
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~---~~~~~i~~~~~~~~~~~k~~~l~~ 235 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVEST---HDLPAIEQRFYEVSPDERLPALQR 235 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcC---CCCCCeeEEEEEeCcHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999988876432 234557888888888889999988
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++... ...++||||+|++.++.+++.|.. .+.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+|++++|
T Consensus 236 ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~V 314 (460)
T PRK11776 236 LLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAV 314 (460)
T ss_pred HHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeE
Confidence 88765 457899999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHhccCCcc
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~ 239 (492)
||||+|.++++|+||+|||||+|++|.+++|+.+.|...++.+++.+...+++..+|......
T Consensus 315 I~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~~~~~~~----------------- 377 (460)
T PRK11776 315 INYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLPSLSPLS----------------- 377 (460)
T ss_pred EEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceecCCchhhcc-----------------
Confidence 999999999999999999999999999999999999999999999998888877666422100
Q ss_pred chhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCc
Q 011149 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 319 (492)
Q Consensus 240 ~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 319 (492)
.. .....+.++.+..++ ...+.+.++++.+........
T Consensus 378 -------------------------------~~--------~~~~~~~~l~i~~~~---~~~~~~~~~~~~~~~~~~~~~ 415 (460)
T PRK11776 378 -------------------------------GV--------PLLPEMVTLCIDGGK---KDKLRPGDILGALTGDAGLDG 415 (460)
T ss_pred -------------------------------cc--------cCCCCeEEEEEeccc---ccCCCccchHHHhhcccCCCh
Confidence 00 012346777877765 456778889999888877788
Q ss_pred CccccEEEeecCccceeEeecCHHHHHHHHhhc
Q 011149 320 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352 (492)
Q Consensus 320 ~~ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~~ 352 (492)
.++|.|.+.+.+ ++++++...++.++...
T Consensus 416 ~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~ 444 (460)
T PRK11776 416 AQIGKINVTDFH----AYVAVERAVAKKALKKL 444 (460)
T ss_pred hhcCCccccccc----ceeecchhhHHHHHHHh
Confidence 889999998776 79999999888888653
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=312.71 Aligned_cols=273 Identities=29% Similarity=0.423 Sum_probs=219.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||||||.+.|+.|+.++|+.+|++|||||....+.++++..++||..|.+.......++.++.++|+.++..+|+.+|..
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~s 306 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWS 306 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHH
Confidence 79999999999999999999999999999999999999999999999988766667788999999999999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
+|..+ ...+.|||+.|.+++..+++.+.+ ++++..|||.|+|..|..++++|-....-||+|||+++||||+|.|+
T Consensus 307 FI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 307 FIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHhc-cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 99886 458999999999999999999874 68999999999999999999999998889999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh-HHHHHHHHHHhCCCceecCCCCHH-HHHHHHHHHHHHHhcc
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVE-DVLESSAEQVVATLNG 235 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~l~~ 235 (492)
+||++|.|.++++||||+|||+|....|.++++++|.| ..++..|++.. ++++.+.+.+.. .-+...++.++..-..
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~i~~~k~~~i~~~l~~ll~~~~e 464 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIKIDPEKLTSIRNKLEALLAKDPE 464 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhccCHHHhhhHHHHHHHHHhhCHH
Confidence 99999999999999999999999999999999999998 56677776654 666655444211 1122333333322222
Q ss_pred CCccchhhhHHHHHHHHhhhCHHH-----H-HHHHHHHcCCCCCCC
Q 011149 236 VHPESVEFFTPTAQRLIEEKGTDA-----L-AAALAQLSGFSRPPS 275 (492)
Q Consensus 236 ~~~~~~~~f~~~a~~l~~~~~~~~-----l-~~al~~~~~~~~~~~ 275 (492)
+..-....|..++..+....+... + ..|++..+|++-.|+
T Consensus 465 Lk~~aqka~isY~rsi~~~rdK~~f~~~~l~~~afa~s~Gl~~~p~ 510 (758)
T KOG0343|consen 465 LKEYAQKAFISYLRSIYLMRDKRVFDVEKLDIEAFADSLGLPGTPR 510 (758)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhcchhccHHHHHHhcCCCCCch
Confidence 211122345555555544333221 1 456666666655444
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=306.10 Aligned_cols=219 Identities=34% Similarity=0.511 Sum_probs=196.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
+|||||..++..||+.+|++++|-|||||+.+++.++++..++||+.|.+.......++..+..+|+.|+...|...|.+
T Consensus 169 LldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~ 248 (567)
T KOG0345|consen 169 LLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVH 248 (567)
T ss_pred HhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999988755555578889999999999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
+|... ...++|||++|...++..+..|.. ...+..+||.|.+.+|..+++.|++-.-.+|+||||++||||||+|+
T Consensus 249 ~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD 327 (567)
T KOG0345|consen 249 LLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGID 327 (567)
T ss_pred HHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCce
Confidence 99875 568999999999999999998874 46789999999999999999999998888999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHH
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (492)
+||+||+|.++..|+||+|||+|+|+.|.+++|+.+.|..++.-+.-.-...++++..+....
T Consensus 328 ~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~ 390 (567)
T KOG0345|consen 328 LVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASL 390 (567)
T ss_pred EEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccch
Confidence 999999999999999999999999999999999999988888777544445555555554443
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=300.91 Aligned_cols=203 Identities=36% Similarity=0.617 Sum_probs=185.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||||||..+|.+||-.+.+++|+++.|||.|+-|.+|+..|+++|..+.+ +.-.-.....+++..+.....+|++++..
T Consensus 379 MLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~v-GsLdL~a~~sVkQ~i~v~~d~~k~~~~~~ 457 (629)
T KOG0336|consen 379 MLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYV-GSLDLVAVKSVKQNIIVTTDSEKLEIVQF 457 (629)
T ss_pred hhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEe-cccceeeeeeeeeeEEecccHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999987644 22233334567788888888899999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++..+.+..++||||..+..|+.|...|. .++.+..|||+-.|.+|+..++.|++|+++||||||+++||||+|+|+||
T Consensus 458 f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV 537 (629)
T KOG0336|consen 458 FVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHV 537 (629)
T ss_pred HHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhccee
Confidence 99998888999999999999999998887 58999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
+|||+|.+++.|+||+|||||+|++|+++.|++.++......|.+
T Consensus 538 ~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 538 YNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred eccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHH
Confidence 999999999999999999999999999999999999877666644
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=286.30 Aligned_cols=210 Identities=30% Similarity=0.540 Sum_probs=199.0
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||+..|.+-|+.|+..+|+++|++|||||.|-.|+.+..+||++|..|.+. ++.+...+.+||..+.+.+|..-|+.
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM---~eLtl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM---EELTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh---hhhhhcchhhheeeechhhhhhhHHH
Confidence 688899999999999999999999999999999999999999999999885 45677889999999999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
|+..+. -.++|||||+...++.+|..+.+ ++.+..+|+.|.|++|.+++..|++|.++.|||||.+.||||+++|++|
T Consensus 316 LfskLq-INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 316 LFSKLQ-INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHHhc-ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 988874 36899999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
||||+|.++++|+||+||.||.|..|.+|.|++-.|+..+..||+.++..++.++
T Consensus 395 INFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip 449 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIP 449 (459)
T ss_pred EecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCC
Confidence 9999999999999999999999999999999999999999999999999887665
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=282.87 Aligned_cols=217 Identities=31% Similarity=0.502 Sum_probs=192.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||+-.|-++|+.|++.+|..+|+++|||||.+.+.++..--...+....+.......+.+.+.+.|+.++...|...|..
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~ 244 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVH 244 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHH
Confidence 68889999999999999999999999999999888875433333222222233455677888999999999999999999
Q ss_pred HHHHHcc--CCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 81 LITVYAK--GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 81 ll~~~~~--~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
+|..+.. ...++||++|..+|+.|+..|+. .+.+..+|+.|+|.+|...+.+|+.+.++|||||||++||+|||.|+
T Consensus 245 ~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~ 324 (442)
T KOG0340|consen 245 LLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVE 324 (442)
T ss_pred HHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCcee
Confidence 9988754 57899999999999999999986 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCC
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~ 217 (492)
+|||||+|.++.+|+||+|||+|+|+.|.++.++++.+.+.++.||+..+.++.+.....
T Consensus 325 LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~ 384 (442)
T KOG0340|consen 325 LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQ 384 (442)
T ss_pred EEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccc
Confidence 999999999999999999999999999999999999999999999999999987755443
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=298.79 Aligned_cols=202 Identities=35% Similarity=0.576 Sum_probs=182.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc---ccHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA---TSKRTI 77 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~---~~k~~~ 77 (492)
||+.||.++|.+|+..+|+++|++||||||...|++|+...|+.|+.|-+. ++..++..+.+.|+...+ .++..+
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd--~~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVD--PNKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeC--CccccchhhhHHHheeccccccccHHH
Confidence 899999999999999999999999999999999999999999999988765 344556666666665543 357777
Q ss_pred HHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCc
Q 011149 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (492)
Q Consensus 78 l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v 156 (492)
|..++.... ..++|||+.|++.|..+.-+|-- ++.+.-|||.|+|.+|.+.+++|++.+++||||||+++|||||+.|
T Consensus 417 l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 777777653 57999999999999999887764 7899999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHH
Q 011149 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (492)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~ 205 (492)
..||||.+|.+.+.|+||+|||+|+|+.|.+++|+...++..++.+-+.
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999988766
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=289.19 Aligned_cols=191 Identities=32% Similarity=0.571 Sum_probs=162.5
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
|+||||.+||+.|+..+...+|++|||||||..|+.+++..+-.|+.|++-. .....-++.+..-.+..+.|.-.|.+
T Consensus 338 miDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGR--AGAAsldViQevEyVkqEaKiVylLe 415 (610)
T KOG0341|consen 338 MIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGR--AGAASLDVIQEVEYVKQEAKIVYLLE 415 (610)
T ss_pred HhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEeccc--ccccchhHHHHHHHHHhhhhhhhHHH
Confidence 8999999999999999999999999999999999999999999999887641 11222222222222333444444433
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
.|+. ...++||||..+.+++.+.++|. +++.++.+||+-.|++|...++.|+.|+-+||||||+++.|+|+|++.||
T Consensus 416 CLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHV 493 (610)
T KOG0341|consen 416 CLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHV 493 (610)
T ss_pred Hhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhh
Confidence 3332 35689999999999999999987 68999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
||||+|.+++.|+||+|||||.|++|.+.+|+..+.
T Consensus 494 INyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 494 INYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred ccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 999999999999999999999999999999998754
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=278.07 Aligned_cols=211 Identities=34% Similarity=0.605 Sum_probs=197.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||..||.++|..|+..+|++.|++++|||+|.|+..+.++|+.+|..|.+. ....+.+.++++|+.+....|+..|.+
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vk--k~~ltl~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVK--KDELTLEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEec--chhhhhhheeeeeeeccccccccHHHH
Confidence 789999999999999999999999999999999999999999999988764 344667889999999988889999988
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
+.+ .-.+++|||||++.+..+...|.. .+.+.++|++|.+.+|+.+++.|+.|..+|||.|+.++||||+.++++|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 877 347899999999999999999975 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
|||++|...+.|+||+||+||.|++|.++.++...+...++.+|+++...+++++..
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 999999999999999999999999999999999999999999999999998877543
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=303.34 Aligned_cols=206 Identities=34% Similarity=0.579 Sum_probs=181.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcC-CCceEEeecccccccccceEEEEEEcCcccHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (492)
||++||.+++..|+..+++++|+++||||+|+.+..+++.++. ++..+.+... ......++.+.+..+....|...|.
T Consensus 289 mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~-~l~~~~~i~q~~~~~~~~~k~~~L~ 367 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSL-DLTACHNIKQEVFVVEEHEKRGKLK 367 (545)
T ss_pred hhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCC-ccccCCCeeEEEEEEechhHHHHHH
Confidence 7899999999999999999999999999999999999999886 4666654321 2233456777777777778888888
Q ss_pred HHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 80 DLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 80 ~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
.++..+. ...++||||+|++.|+.|+..|.. .+.+..+||+|++++|+.++++|++|+++|||||+++++|||||+|+
T Consensus 368 ~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 368 MLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred HHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 8887764 567999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhC
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (492)
+|||||+|.++++|+||+|||||+|++|.+++|+++.+...++.|.+.+.
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~ 497 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLR 497 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877777765543
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=296.84 Aligned_cols=210 Identities=39% Similarity=0.611 Sum_probs=187.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||+++|..+++.|+..++...|+++||||+++.+..++.+++.+|..+.+.. .......+.+++..+....+.++|..
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVAR--RNTASEQVTQHVHFVDKKRKRELLSQ 238 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEec--ccccccceeEEEEEcCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998876643 22334567777777777778777777
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++... ...++||||+|+..++.+++.|.. .+.+..+||+|++.+|.+++++|++|+++|||||+++++|||+|+|++|
T Consensus 239 l~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 239 MIGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 76543 447899999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceec
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (492)
|||++|.++++|+||+|||||+|..|.+++|+...|...++.+++.+..++++.
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~ 371 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999998887766443
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=288.54 Aligned_cols=200 Identities=42% Similarity=0.666 Sum_probs=176.4
Q ss_pred CCC-CChHHHHHHHHHhCCC----CCcEEEEeeeCChHHHHHHHHHcCC-CceEEeecccccccccceEEEEEEcCcccH
Q 011149 1 MLA-VGFEEDVELILENLPP----KRQSMLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (492)
Q Consensus 1 mL~-~GF~~~l~~Il~~~~~----~~q~ll~SAT~p~~i~~~~~~~~~~-~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (492)
||| |||.++|++|+.++.. ++|++|||||.|..+..++..|+.+ ...+.+. .......++.+..+.+....|
T Consensus 238 MlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~--rvg~~~~ni~q~i~~V~~~~k 315 (482)
T KOG0335|consen 238 MLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG--RVGSTSENITQKILFVNEMEK 315 (482)
T ss_pred hhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe--eeccccccceeEeeeecchhh
Confidence 899 9999999999998854 7999999999999999999999986 4444432 345567888899999988888
Q ss_pred HHHHHHHHHHHc---cCC-----eEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 75 RTILSDLITVYA---KGG-----KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 75 ~~~l~~ll~~~~---~~~-----~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
...|.++|.... ... +++|||+|++.|.+|+..|.. .+++..+||+.+|.+|.+.++.|++|++.+||||+
T Consensus 316 r~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~ 395 (482)
T KOG0335|consen 316 RSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATN 395 (482)
T ss_pred HHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEeh
Confidence 888888876543 233 899999999999999999985 89999999999999999999999999999999999
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHH
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (492)
+++||||||+|+||||||+|.+..+|+||+|||||+|..|.++.|+........+.|
T Consensus 396 VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L 452 (482)
T KOG0335|consen 396 VAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKAL 452 (482)
T ss_pred hhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHH
Confidence 999999999999999999999999999999999999999999999996555444444
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=271.78 Aligned_cols=215 Identities=31% Similarity=0.496 Sum_probs=191.9
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll 82 (492)
.||.++--.|...+|++.|+|+||||....+.+++.+..+++..+.+. .+.....+|.++|+.|.. .+|+++|..|.
T Consensus 248 qG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk--~eel~L~~IkQlyv~C~~~~~K~~~l~~ly 325 (477)
T KOG0332|consen 248 QGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILK--REELALDNIKQLYVLCACRDDKYQALVNLY 325 (477)
T ss_pred ccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeee--hhhccccchhhheeeccchhhHHHHHHHHH
Confidence 589999999999999999999999999999999999999999888775 445567888998888865 47999988866
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
..+ .-.+.||||.|++.|..|+..|.. +..|..|||+|.-++|..+++.||.|..+|||+|+|++||||++.|++|||
T Consensus 326 g~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN 404 (477)
T KOG0332|consen 326 GLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN 404 (477)
T ss_pred hhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe
Confidence 554 347899999999999999999985 899999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhHHHHHhhhcccCCCCCeEEEecChh-hHHHHHHHHHHhCCCceecCCCCHHHH
Q 011149 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSPPVVEDV 221 (492)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~~~~p~~~~~ 221 (492)
||+|. |.+.|+||+|||||.|++|.++.|+... ....+..|++++..++..+.+...+|+
T Consensus 405 ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332|consen 405 YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHH
Confidence 99994 7899999999999999999999998765 567788999999988888776554443
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=300.40 Aligned_cols=209 Identities=34% Similarity=0.545 Sum_probs=185.4
Q ss_pred CCCCChHHHHHHHHHhCCC--CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHH
Q 011149 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~--~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (492)
||++||..+|+.|++.+|. .+|+++||||++..+..++..++.+|..+.+.. .......+.++++.+....|...|
T Consensus 171 lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 171 MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVET--ETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecc--ccccccceeEEEEecCHHHHHHHH
Confidence 6889999999999999987 789999999999999999999999887665432 223445677777777777788777
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
..++... ...++||||+|++.|+.|++.|.+ .+.+..+||+|++.+|++++++|++|+++|||||+++++|||+|+|+
T Consensus 249 ~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~ 327 (572)
T PRK04537 249 LGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVK 327 (572)
T ss_pred HHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCC
Confidence 7777543 457999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCcee
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (492)
+|||||+|.++++|+||+||+||.|++|.+++|+.+.+...+..|++.+..+++.
T Consensus 328 ~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~ 382 (572)
T PRK04537 328 YVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPV 382 (572)
T ss_pred EEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCc
Confidence 9999999999999999999999999999999999999988899998887766543
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=293.44 Aligned_cols=212 Identities=34% Similarity=0.549 Sum_probs=187.5
Q ss_pred CCCCChHHHHHHHHHhCCC--CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHH
Q 011149 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~--~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (492)
|+++||..+++.|+..+|. .+|+++||||+|..+..++..++.+|..+.+.. .......+.+.++......|...|
T Consensus 169 l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~--~~~~~~~i~~~~~~~~~~~k~~~l 246 (423)
T PRK04837 169 MFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEP--EQKTGHRIKEELFYPSNEEKMRLL 246 (423)
T ss_pred HhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcC--CCcCCCceeEEEEeCCHHHHHHHH
Confidence 6889999999999999984 577899999999999999999999998877642 233345566666666667788888
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
..++... ...++||||+|+..|+.++..|.. ++.+..+||+|++++|.+++++|++|+++||||||++++|||+|+|+
T Consensus 247 ~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 247 QTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT 325 (423)
T ss_pred HHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC
Confidence 8887654 457999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~ 215 (492)
+|||||+|.+.++|+||+||+||.|++|.+++|+.+.+...+..+++.+...++...+
T Consensus 326 ~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~ 383 (423)
T PRK04837 326 HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKY 383 (423)
T ss_pred EEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccC
Confidence 9999999999999999999999999999999999999999999999988877654433
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=287.36 Aligned_cols=204 Identities=28% Similarity=0.458 Sum_probs=178.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||++||.+++..|+..++ +.|+++||||+|+.+..+++.++.++..+.+.. .......+.+..+.+....|...|..
T Consensus 282 ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~--~~~~~~~v~q~~~~~~~~~k~~~l~~ 358 (518)
T PLN00206 282 MLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGN--PNRPNKAVKQLAIWVETKQKKQKLFD 358 (518)
T ss_pred HhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCcceeEEEEeccchhHHHHHHH
Confidence 789999999999999986 689999999999999999999999888776542 23344567777777777777777777
Q ss_pred HHHHHcc-CCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 81 LITVYAK-GGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 81 ll~~~~~-~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
++..... ..++||||+|+..++.++..|.. .+.+..+||+|++++|..++++|++|+++|||||++++||||+|+|+
T Consensus 359 ~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~ 438 (518)
T PLN00206 359 ILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVR 438 (518)
T ss_pred HHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCC
Confidence 7765432 35899999999999999999974 68899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhC
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (492)
+|||||+|.+.++|+||+|||||.|..|.+++|+++.+...+..|.+.+.
T Consensus 439 ~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 439 QVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred EEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988777777766554
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-32 Score=280.91 Aligned_cols=209 Identities=31% Similarity=0.534 Sum_probs=183.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCCh-HHHHHHHHHcCCCceEEeecccccccccceEEEEEEcC-cccHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPS-WVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTIL 78 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~-~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l 78 (492)
||++||..+++.|+..++...|+++||||++. .+..+++.++.+|..+.+.. .......+.++++.+. ...|..+|
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~~k~~~l 236 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEP--SRRERKKIHQWYYRADDLEHKTALL 236 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecC--CcccccCceEEEEEeCCHHHHHHHH
Confidence 78999999999999999999999999999984 68889999998988877643 2233455667666654 35678888
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
..++... ...++||||+|++.++.++..|.. .+.+..+||+|++.+|..++++|++|+++|||||+++++|||+|+|+
T Consensus 237 ~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 237 CHLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 8777642 457999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCcee
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (492)
+|||||+|.+.+.|+||+|||||+|..|.+++|+...+...+..+++++..++..
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999998877665543
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=262.49 Aligned_cols=206 Identities=26% Similarity=0.475 Sum_probs=187.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
||..||.+|+..|.+.+|+..|.+|||||+.+.|..+.+.++++|+.+.+.... ...+..+.||++.|...+|..++..
T Consensus 182 llsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~e-l~~~dqL~Qy~v~cse~DKflllya 260 (569)
T KOG0346|consen 182 LLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGE-LPNPDQLTQYQVKCSEEDKFLLLYA 260 (569)
T ss_pred hhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEecccc-CCCcccceEEEEEeccchhHHHHHH
Confidence 678999999999999999999999999999999999999999999998876433 3356889999999999999999988
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc--------------
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------------- 145 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-------------- 145 (492)
+++.---.+++|||+||.+.+..|...|+. +++.++|.|.||..-|..++++|..|.++||||||
T Consensus 261 llKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kg 340 (569)
T KOG0346|consen 261 LLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKG 340 (569)
T ss_pred HHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccc
Confidence 887654568999999999999999999987 79999999999999999999999999999999999
Q ss_pred ---------------------cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 146 ---------------------VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 146 ---------------------~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
-++||||+.+|..|||||+|.++.+||||+|||+|++++|.++.|+.|.|..-...||.
T Consensus 341 k~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~ 420 (569)
T KOG0346|consen 341 KSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLES 420 (569)
T ss_pred cccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHH
Confidence 24799999999999999999999999999999999999999999999999875555555
Q ss_pred HhC
Q 011149 205 DVG 207 (492)
Q Consensus 205 ~~~ 207 (492)
.+.
T Consensus 421 ~~~ 423 (569)
T KOG0346|consen 421 ILK 423 (569)
T ss_pred HHh
Confidence 443
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-31 Score=276.71 Aligned_cols=208 Identities=34% Similarity=0.585 Sum_probs=184.6
Q ss_pred CCCCChHHHHHHHHHhCCC--CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHH
Q 011149 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~--~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (492)
|++++|..++..|++.++. +.|+++||||++..+..+++.|+.+|..+.+.. .......+.++++.+...++..+|
T Consensus 249 l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~k~~~l 326 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEP--ENVASDTVEQHVYAVAGSDKYKLL 326 (475)
T ss_pred HHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEecc--CcCCCCcccEEEEEecchhHHHHH
Confidence 4688999999999999975 579999999999999999999999998776643 223344566666666777888888
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
..++... ...++||||++++.++.+++.|.. .+.+..+||+|++++|.++++.|++|+++|||||+++++|||||+++
T Consensus 327 ~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~ 405 (475)
T PRK01297 327 YNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGIS 405 (475)
T ss_pred HHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCC
Confidence 8877653 446999999999999999999985 78899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCce
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 211 (492)
+||+|++|.+.++|+||+||+||.|+.|.+++|+...|...+..+++.++.+++
T Consensus 406 ~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 406 HVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred EEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999999887764
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=263.02 Aligned_cols=197 Identities=35% Similarity=0.564 Sum_probs=175.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcC-cccHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~ 79 (492)
|.+|||..+|+.|..++.+++|+|+||||++..|+.+++.+|.+|+.+... ........|.|.+..++ ...|+..|.
T Consensus 382 mfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg--~vgean~dITQ~V~V~~s~~~Kl~wl~ 459 (731)
T KOG0339|consen 382 MFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG--EVGEANEDITQTVSVCPSEEKKLNWLL 459 (731)
T ss_pred hhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe--ehhccccchhheeeeccCcHHHHHHHH
Confidence 889999999999999999999999999999999999999999999877543 22333455666555544 456888877
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
.-|..+...+++|||+..+..+++|+..|. +.+.+..+||+|.|.+|.+++.+|+.+...|||+||+++||+|||++..
T Consensus 460 ~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikT 539 (731)
T KOG0339|consen 460 RHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKT 539 (731)
T ss_pred HHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccce
Confidence 767666677899999999999999999998 5899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHH
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 199 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~ 199 (492)
|||||+-.+++.|.||+||+||+|.+|++++|+++.+..+.
T Consensus 540 VvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fA 580 (731)
T KOG0339|consen 540 VVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFA 580 (731)
T ss_pred eecccccchhHHHHHHhhhcccccccceeeEEechhhHHHh
Confidence 99999999999999999999999999999999999886543
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=264.56 Aligned_cols=206 Identities=31% Similarity=0.491 Sum_probs=176.5
Q ss_pred CCCCChHHHHHHHHHhC-------------CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccc------------
Q 011149 1 MLAVGFEEDVELILENL-------------PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD------------ 55 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~-------------~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~------------ 55 (492)
+||+||.++|..|++.+ |+..|.+|+||||.+-|.+++..-++||+.|.+.....
T Consensus 299 lleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev 378 (708)
T KOG0348|consen 299 LLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEV 378 (708)
T ss_pred HHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhc
Confidence 58999999999999986 23479999999999999999999999999987321000
Q ss_pred -----------cccccceEEEEEEcCcccHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHcc----------
Q 011149 56 -----------EKLAEGIKLYAISTTATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI---------- 111 (492)
Q Consensus 56 -----------~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~~---------- 111 (492)
..+++.+.+.|..++..-++-.|..+|... ....++|||+.+.+.++.-+..|...
T Consensus 379 ~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~ 458 (708)
T KOG0348|consen 379 DDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSG 458 (708)
T ss_pred CCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccC
Confidence 123456678888888888877777776554 24568999999999999988887642
Q ss_pred -------------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhc
Q 011149 112 -------------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178 (492)
Q Consensus 112 -------------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~ 178 (492)
.++.-|||.|+|++|..+++.|+...-.||+||||++||||+|+|.+||+||+|.++++|+||+|||
T Consensus 459 ~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRT 538 (708)
T KOG0348|consen 459 APDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRT 538 (708)
T ss_pred CcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhh
Confidence 2466799999999999999999998888999999999999999999999999999999999999999
Q ss_pred ccCCCCCeEEEecChhhHHHHHHHHHHh
Q 011149 179 GRAGKEGTAILMFTSSQRRTVRSLERDV 206 (492)
Q Consensus 179 gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (492)
+|+|.+|.+++|+.|.|.++++.|+...
T Consensus 539 ARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 539 ARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred hhccCCCceEEEecccHHHHHHHHHhhc
Confidence 9999999999999999999998887654
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=265.68 Aligned_cols=213 Identities=33% Similarity=0.590 Sum_probs=183.9
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc-ccHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~ 79 (492)
|++.+|...+.++++.++.+.|++++|||+|+++..+...++.+|..+.+.. .......+.++++.+.. ..+...+.
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKK--DELTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCC--CCcccCCceEEEEecChHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999887765432 22234556666666554 34556666
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
.++... ...++||||+|++.++.+++.|.. .+.+..+||+|++++|..++++|++|+++|||||+++++|||+|++++
T Consensus 260 ~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 260 DLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 665543 346899999999999999999985 688999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
||+|++|.+...|+||+||+||.|+.|.|++|+++.+...++.+++.+...++...+.
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcc
Confidence 9999999999999999999999999999999999999999999999998887765544
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=273.70 Aligned_cols=204 Identities=36% Similarity=0.597 Sum_probs=189.0
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcC-cccHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~ 79 (492)
|+||||.+++..|++.+++.+|+++||||+|..+..++.+.++.|+.|.+- ....+...+++.+..++ ...|+..|.
T Consensus 527 mfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--~~svV~k~V~q~v~V~~~e~eKf~kL~ 604 (997)
T KOG0334|consen 527 MFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--GRSVVCKEVTQVVRVCAIENEKFLKLL 604 (997)
T ss_pred hheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--cceeEeccceEEEEEecCchHHHHHHH
Confidence 789999999999999999999999999999999999999999988886554 34556677888888777 778999999
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
.||..+....++||||...+.|+.+...|.+ .+.+..|||+.+|.+|..+++.|+++.+.+||||++++||||++++.+
T Consensus 605 eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~L 684 (997)
T KOG0334|consen 605 ELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELIL 684 (997)
T ss_pred HHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceE
Confidence 9998887889999999999999999999986 788999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHh
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (492)
|||||+|...+.|+||+|||||+|++|.+++|+++.+..+.-.|.+.+
T Consensus 685 vvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 685 VVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred EEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999998888888887777
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=260.42 Aligned_cols=223 Identities=33% Similarity=0.512 Sum_probs=179.6
Q ss_pred CCCCChHHHHHHHHHhCC-----CCCcEEEEeeeCCh---------------------HHHHHHHHH--cCCCceEEeec
Q 011149 1 MLAVGFEEDVELILENLP-----PKRQSMLFSATMPS---------------------WVKKLSRKY--LDNPLNIDLVG 52 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-----~~~q~ll~SAT~p~---------------------~i~~~~~~~--~~~~~~i~~~~ 52 (492)
|++.|..+++..||..+. ..+|++.||||+.- .|+.+.++. ...|..|++.
T Consensus 352 mvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t- 430 (731)
T KOG0347|consen 352 MVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLT- 430 (731)
T ss_pred HhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecC-
Confidence 788999999999999886 46899999999832 122233322 2256667664
Q ss_pred ccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHh
Q 011149 53 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLN 131 (492)
Q Consensus 53 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~ 131 (492)
+...+...+..-.+.|+..+|.-.|..+|..| ++++|||||+.+.+..|+-+|.. .+....||+.|.|.+|.+.++
T Consensus 431 -~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLE 507 (731)
T KOG0347|consen 431 -PQSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLE 507 (731)
T ss_pred -cchhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHH
Confidence 23344444444555566656655555555544 68999999999999999999986 789999999999999999999
Q ss_pred hhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCce
Q 011149 132 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (492)
Q Consensus 132 ~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 211 (492)
+|++....||||||||+||||||.|+|||||.+|.+.+-|+||+|||+|++..|..++|+.|.|...+.+|.+.+..+.+
T Consensus 508 kF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 508 KFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred HHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888877666
Q ss_pred ecCCCCHHHHHHHHHH
Q 011149 212 FVSPPVVEDVLESSAE 227 (492)
Q Consensus 212 ~~~~p~~~~~~~~~~~ 227 (492)
....|....++....+
T Consensus 588 lpifPv~~~~m~~lke 603 (731)
T KOG0347|consen 588 LPIFPVETDIMDALKE 603 (731)
T ss_pred CCceeccHHHHHHHHH
Confidence 5445655655554444
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=268.90 Aligned_cols=241 Identities=20% Similarity=0.292 Sum_probs=174.6
Q ss_pred hHHHHHHHHH-------hCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcC--------
Q 011149 6 FEEDVELILE-------NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-------- 70 (492)
Q Consensus 6 F~~~l~~Il~-------~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-------- 70 (492)
|..++..+++ ..+.++|+++||||+++..+ ++++++..|..+ +. . .........+..+..+
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~-~-~~~~~~~~~~~~~~p~~~~~~~~~ 248 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VT-E-DGSPRGARTVALWEPPLTELTGEN 248 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-EC-C-CCCCcCceEEEEecCCcccccccc
Confidence 5555444443 45678999999999998865 577788777543 22 1 1111122222222221
Q ss_pred --------cccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc---------ccceeeecCCCCHHHHHHHHhhh
Q 011149 71 --------ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGF 133 (492)
Q Consensus 71 --------~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~---------~~~~~~lhg~~~~~~r~~~~~~F 133 (492)
...+..++..+++ ...++||||+|++.|+.++..|.+ ...+..+||++++++|.+++++|
T Consensus 249 ~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 249 GAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred ccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 1123344444443 467999999999999999998764 24678999999999999999999
Q ss_pred cCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecC--hhhHHHHHHHHHHhCCCce
Q 011149 134 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT--SSQRRTVRSLERDVGCKFE 211 (492)
Q Consensus 134 ~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~--~~e~~~~~~l~~~~~~~~~ 211 (492)
++|++++||||+++++|||||++++||||++|.+.++|+||+|||||.|+.|.+++++. +.|...+..+++.+..+++
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e 405 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVE 405 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999986 5677788888888888877
Q ss_pred ecC-CCCHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhh
Q 011149 212 FVS-PPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE 254 (492)
Q Consensus 212 ~~~-~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~ 254 (492)
... .|....++...+..+..++ .+..++.+.|.+...++++.
T Consensus 406 ~~~~~~~n~~il~~hl~~aa~e~-~l~~~~~~~~~~~~~~~~~~ 448 (742)
T TIGR03817 406 ATVFDPDNPYVLGPHLCCAAAEL-PLTEADLELFGPAAAEVLDQ 448 (742)
T ss_pred cceeCCCcHHHHHHHHHHHHhcC-CCChHHHHhhchhHHHHHHH
Confidence 643 3555666666555544443 34444445554444444443
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=243.61 Aligned_cols=211 Identities=33% Similarity=0.489 Sum_probs=195.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
+++|||.+++.+|++.+|..+|+++||||+|..+..+++.-+.+|..|.+. -+..+.+.++..+..+...+|...|..
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRld--vetkise~lk~~f~~~~~a~K~aaLl~ 253 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD--VETKISELLKVRFFRVRKAEKEAALLS 253 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEee--hhhhcchhhhhheeeeccHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999988864 345667888888888999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++.....++++||||.|+..|+.+...|.. ++.+..++|.|.+..|...+.+|+.++..+||.||+++||+|||-.+.|
T Consensus 254 il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 254 ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred HHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccc
Confidence 988776677999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceec
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (492)
||||+|.+...|+||+||+.|+|++|.+|.++.+++..++-.|...++..+...
T Consensus 334 inyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~ 387 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFA 387 (529)
T ss_pred ccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeec
Confidence 999999999999999999999999999999999999999999988888766543
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-28 Score=245.73 Aligned_cols=196 Identities=28% Similarity=0.502 Sum_probs=171.3
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcc--------cHH
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT--------SKR 75 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~--------~k~ 75 (492)
-.|.++|..|+..+|..+|++.||||.|..+..+..+||++|..|..... ......|++|++..+.. .|+
T Consensus 183 ~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~--d~~L~GikQyv~~~~s~nnsveemrlkl 260 (980)
T KOG4284|consen 183 ESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD--DVQLFGIKQYVVAKCSPNNSVEEMRLKL 260 (980)
T ss_pred hhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccC--CceeechhheeeeccCCcchHHHHHHHH
Confidence 45999999999999999999999999999999999999999999887532 23345677777765432 367
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC
Q 011149 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (492)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~ 154 (492)
+.|..+++.+ +..++||||+....|+.++..|.. ++.|.++.|.|+|.+|..+++.+|.-.++|||+||+.+||||-+
T Consensus 261 q~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~ 339 (980)
T KOG4284|consen 261 QKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDAD 339 (980)
T ss_pred HHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCcc
Confidence 7777777766 557899999999999999999995 89999999999999999999999999999999999999999999
Q ss_pred CcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhH-HHHHHH
Q 011149 155 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR-RTVRSL 202 (492)
Q Consensus 155 ~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~-~~~~~l 202 (492)
+|++|||.|+|.+.++|.||+||+||.|..|.+++|+...+. ..+..+
T Consensus 340 ~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 340 NVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred ccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 999999999999999999999999999999999998876443 443333
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=256.04 Aligned_cols=199 Identities=19% Similarity=0.253 Sum_probs=155.0
Q ss_pred CCCCC--hHHHHHHH--HHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCccc-HH
Q 011149 1 MLAVG--FEEDVELI--LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KR 75 (492)
Q Consensus 1 mL~~G--F~~~l~~I--l~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~ 75 (492)
|++.| |+++...| +....++.|+++||||++..+.+.+.+.+.-...+.+.. .....++. |..++... ..
T Consensus 593 VSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~---Sf~RpNL~--y~Vv~k~kk~l 667 (1195)
T PLN03137 593 VSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ---SFNRPNLW--YSVVPKTKKCL 667 (1195)
T ss_pred hhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec---ccCccceE--EEEeccchhHH
Confidence 35566 88887763 455556789999999999998886666665332222221 11123332 22222222 23
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC
Q 011149 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (492)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~ 154 (492)
..|..++.......++||||+|++.|+.+++.|.. ++.+..+||+|++++|..++++|++++++|||||+++++|||+|
T Consensus 668 e~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkP 747 (1195)
T PLN03137 668 EDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKP 747 (1195)
T ss_pred HHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCcc
Confidence 44444544333356899999999999999999985 89999999999999999999999999999999999999999999
Q ss_pred CcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 155 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 155 ~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
+|++||||++|.+++.|+||+|||||.|..+.|++|+...+...++.+..
T Consensus 748 DVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 748 DVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988777766654
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=243.47 Aligned_cols=196 Identities=23% Similarity=0.365 Sum_probs=152.4
Q ss_pred CCCC--hHHHHHHH---HHhCCCCCcEEEEeeeCChHHHHHHHHHcC--CCceEEeecccccccccceEEEEEEcCcccH
Q 011149 2 LAVG--FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (492)
Q Consensus 2 L~~G--F~~~l~~I---l~~~~~~~q~ll~SAT~p~~i~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (492)
++.| |+.+...| ...+ ++.|+++||||+++.+...+.+.+. +|..+... . ...++.+. +.......
T Consensus 140 ~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~--~r~nl~~~-v~~~~~~~ 212 (470)
T TIGR00614 140 SQWGHDFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---F--DRPNLYYE-VRRKTPKI 212 (470)
T ss_pred CccccccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---C--CCCCcEEE-EEeCCccH
Confidence 4444 77776554 3344 5789999999999988766655543 44433221 1 12233222 22222234
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCC
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (492)
...+..++....+...+||||+|++.|+.+++.|.. ++.+..+|++|++++|.+++++|++|+++|||||+++++|||+
T Consensus 213 ~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~ 292 (470)
T TIGR00614 213 LEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINK 292 (470)
T ss_pred HHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCc
Confidence 444444444333456779999999999999999985 7899999999999999999999999999999999999999999
Q ss_pred CCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 154 ~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
|+|++||||++|.+++.|+||+||+||.|.++.|++|+++.+...++.+..
T Consensus 293 p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 293 PDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred ccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998877777654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=238.94 Aligned_cols=200 Identities=30% Similarity=0.463 Sum_probs=173.1
Q ss_pred ChHHHHHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEc-CcccHHHHHHHHH
Q 011149 5 GFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST-TATSKRTILSDLI 82 (492)
Q Consensus 5 GF~~~l~~Il~~~~-~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~ll 82 (492)
.|.+++..|++.+. ++..+-+||||+|..|+++++..+.++..|.+-. .+ .....|.|..+.+ ....|+.++..++
T Consensus 305 ~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~-~~-sa~~~V~QelvF~gse~~K~lA~rq~v 382 (593)
T KOG0344|consen 305 FFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGL-RN-SANETVDQELVFCGSEKGKLLALRQLV 382 (593)
T ss_pred hHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEec-ch-hHhhhhhhhheeeecchhHHHHHHHHH
Confidence 79999999999875 5678889999999999999999998888776532 22 2244555544444 4557888888888
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHH--cccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEE
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~--~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI 160 (492)
..- -..++|||+.+.+.|.+|++.|. ..+.+.++||+.++.+|++++++||.|+++|||||++++||||+.+|++||
T Consensus 383 ~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI 461 (593)
T KOG0344|consen 383 ASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI 461 (593)
T ss_pred hcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE
Confidence 764 35799999999999999999994 478999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhC
Q 011149 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (492)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (492)
|||+|.+..+|+||+||+||+|+.|.+|+||+..+...++.++....
T Consensus 462 nyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 462 NYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred ecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHH
Confidence 99999999999999999999999999999999999888888766543
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=240.70 Aligned_cols=181 Identities=18% Similarity=0.286 Sum_probs=140.9
Q ss_pred HHHHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc----------ccHHH
Q 011149 8 EDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA----------TSKRT 76 (492)
Q Consensus 8 ~~l~~Il~~~~-~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~----------~~k~~ 76 (492)
+.+..+++.++ ..+|+++||||+|.++..+ ++|+.+|..|.+.. .+...++++|+.... ..+..
T Consensus 308 DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g----rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~ 382 (675)
T PHA02653 308 DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG----GTLFPISEVYVKNKYNPKNKRAYIEEEKKN 382 (675)
T ss_pred hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC----CcCCCeEEEEeecCcccccchhhhHHHHHH
Confidence 44556665554 4469999999999988887 57999998887642 233556677664331 12333
Q ss_pred HHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhh-cCCCeEEEEecccccccC
Q 011149 77 ILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGF-RQGKFTVLVATDVAARGL 151 (492)
Q Consensus 77 ~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F-~~g~~~iLVaT~~~~~Gi 151 (492)
++..+..... ..+++||||+++.+++.+++.|.+ .+.+..|||+|++. ++++++| ++++.+||||||++++||
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGI 460 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSV 460 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccc
Confidence 3333332221 346899999999999999999985 47899999999985 5677787 789999999999999999
Q ss_pred CCCCcCEEEecC---CCC---------ChhHHHHHhhhcccCCCCCeEEEecChhhH
Q 011149 152 DIPNVDLIIHYE---LPN---------DPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 152 di~~v~~VI~~~---~P~---------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
|||+|++||+++ .|. +.++|+||+|||||. ++|.|+.|+++.+.
T Consensus 461 DIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 461 TIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred cccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 999999999998 565 889999999999999 79999999998774
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=241.39 Aligned_cols=189 Identities=20% Similarity=0.367 Sum_probs=146.9
Q ss_pred hHHHHHH---HHHhCCCCCcEEEEeeeCChHHHHHHHHHcC--CCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 6 FEEDVEL---ILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 6 F~~~l~~---Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
|+.++.. +...+ ++.|+++||||+++.+...+...+. +|... +.. . ...++.+ .......+...+..
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~--~--~r~nl~~--~v~~~~~~~~~l~~ 229 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--F--DRPNIRY--TLVEKFKPLDQLMR 229 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECC--C--CCCccee--eeeeccchHHHHHH
Confidence 6665544 34444 4789999999999887664444443 44322 211 1 1223322 22222234444444
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++... ...++||||+|++.|+.+++.|.. .+.+..+|++|++++|.++++.|++++++|||||+++++|||+|+|++|
T Consensus 230 ~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~V 308 (607)
T PRK11057 230 YVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFV 308 (607)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEE
Confidence 44432 457899999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHH
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (492)
|||++|.+.++|+||+||+||.|.++.|++|+++.+...++.+.
T Consensus 309 I~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877776664
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-26 Score=248.06 Aligned_cols=242 Identities=17% Similarity=0.240 Sum_probs=168.9
Q ss_pred CCCCChHH-HHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHH----
Q 011149 1 MLAVGFEE-DVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR---- 75 (492)
Q Consensus 1 mL~~GF~~-~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~---- 75 (492)
||+..|.- -+.+|++.++++.|+|+||||++... ..+|+.++..|.+.+. ...++++|+......+.
T Consensus 126 ~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v 197 (819)
T TIGR01970 126 SLDADLGLALALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGR-----SFPVEIRYLPLRGDQRLEDAV 197 (819)
T ss_pred hhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc-----ceeeeeEEeecchhhhHHHHH
Confidence 35555533 23456677888999999999998753 3568877776665321 12356677665544332
Q ss_pred -HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccccc
Q 011149 76 -TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (492)
Q Consensus 76 -~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~G 150 (492)
..+..++.. ..+++|||++++.+++.+++.|.+ .+.+..|||+|++++|.++++.|++|..+||||||++++|
T Consensus 198 ~~~l~~~l~~--~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErg 275 (819)
T TIGR01970 198 SRAVEHALAS--ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETS 275 (819)
T ss_pred HHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhc
Confidence 223333322 357899999999999999999985 4778999999999999999999999999999999999999
Q ss_pred CCCCCcCEEEecCCCC------------------ChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCcee
Q 011149 151 LDIPNVDLIIHYELPN------------------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (492)
Q Consensus 151 idi~~v~~VI~~~~P~------------------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (492)
||||+|++|||+++|. |.++|+||+||+||. .+|.||.|++..+...+ .....
T Consensus 276 ItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l---~~~~~----- 346 (819)
T TIGR01970 276 LTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRL---PAQDE----- 346 (819)
T ss_pred ccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhh---hcCCC-----
Confidence 9999999999999875 345699999999999 79999999998765332 22211
Q ss_pred cCCCCHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCC
Q 011149 213 VSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSR 272 (492)
Q Consensus 213 ~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~~ 272 (492)
.|+....+..++..+......+...| .+++.+..+.+.+|+..|..+..
T Consensus 347 ------PEI~r~~L~~~~L~l~~~g~~~~~~~-----~~l~~P~~~~i~~a~~~L~~lga 395 (819)
T TIGR01970 347 ------PEILQADLSGLALELAQWGAKDPSDL-----RWLDAPPSVALAAARQLLQRLGA 395 (819)
T ss_pred ------cceeccCcHHHHHHHHHcCCCChhhC-----CCCCCcCHHHHHHHHHHHHHCCC
Confidence 12222223333333433332222222 34556666777777766654433
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-25 Score=236.93 Aligned_cols=184 Identities=21% Similarity=0.275 Sum_probs=140.8
Q ss_pred CCCChHHHHHHHHHhC--CCC---CcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHH
Q 011149 2 LAVGFEEDVELILENL--PPK---RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~--~~~---~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (492)
|+|||.++|+.|++.+ ++. +|+++||||+|..+.++++.++.++..+.+.. .......+.++ +.+....|..
T Consensus 182 Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~--~~l~a~ki~q~-v~v~~e~Kl~ 258 (844)
T TIGR02621 182 LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK--KRLAAKKIVKL-VPPSDEKFLS 258 (844)
T ss_pred hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc--ccccccceEEE-EecChHHHHH
Confidence 6899999999999975 443 69999999999999999988988887666542 23334455554 3344334443
Q ss_pred HHHH-HHHHH-ccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHH-----HHHhhhcC----CC-------e
Q 011149 77 ILSD-LITVY-AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRE-----RTLNGFRQ----GK-------F 138 (492)
Q Consensus 77 ~l~~-ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~-----~~~~~F~~----g~-------~ 138 (492)
.+.. +...+ ....++||||||++.|+.+++.|.+.. ...|||+|++.+|+ +++++|++ ++ .
T Consensus 259 ~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g-~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~ 337 (844)
T TIGR02621 259 TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK-FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGT 337 (844)
T ss_pred HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC-CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccc
Confidence 3222 22222 245789999999999999999998632 28999999999999 88999987 43 6
Q ss_pred EEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCC-eEEEecC
Q 011149 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG-TAILMFT 192 (492)
Q Consensus 139 ~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g-~~i~l~~ 192 (492)
.|||||+++++||||+. ++||++..| .++|+||+||++|.|+.+ ..++++.
T Consensus 338 ~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 338 VYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred eEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 89999999999999986 889988776 589999999999999753 3355553
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=239.30 Aligned_cols=231 Identities=18% Similarity=0.246 Sum_probs=167.3
Q ss_pred HHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHH-----HHHHHHHHH
Q 011149 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-----ILSDLITVY 85 (492)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-----~l~~ll~~~ 85 (492)
.++++.++++.|+|+||||++.. . ..+|+.++..|.+.+. ...++++|+..+...+.. .+..++..
T Consensus 140 ~~i~~~lr~~lqlilmSATl~~~--~-l~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~- 210 (812)
T PRK11664 140 LDVQQGLRDDLKLLIMSATLDND--R-LQQLLPDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ- 210 (812)
T ss_pred HHHHHhCCccceEEEEecCCCHH--H-HHHhcCCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh-
Confidence 45677788899999999999875 2 3567877766654322 123667777665544443 23333321
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
..+.+|||++++++++.+++.|.+ .+.+..+||+|++++|+++++.|++|+.+||||||++++|||||+|++||+
T Consensus 211 -~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 211 -ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred -CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEE
Confidence 357899999999999999999985 467889999999999999999999999999999999999999999999999
Q ss_pred cCCCC------------------ChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHH
Q 011149 162 YELPN------------------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223 (492)
Q Consensus 162 ~~~P~------------------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~ 223 (492)
+++|. |.++|+||+||+||. .+|.||.|++..+...+ .. -...||+.
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~l---~~-----------~~~PEI~r 354 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAERA---AA-----------QSEPEILH 354 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhhC---cc-----------CCCCceec
Confidence 88764 346899999999999 69999999998765321 11 11224444
Q ss_pred HHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCC
Q 011149 224 SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (492)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~ 271 (492)
..+..++..+......+...| .+++.+.++.+.+|+..|..+.
T Consensus 355 ~dL~~~~L~l~~~g~~~~~~~-----~~ld~P~~~~~~~A~~~L~~lg 397 (812)
T PRK11664 355 SDLSGLLLELLQWGCHDPAQL-----SWLDQPPAAALAAAKRLLQQLG 397 (812)
T ss_pred cchHHHHHHHHHcCCCCHHhC-----CCCCCCCHHHHHHHHHHHHHCC
Confidence 445555555544433222222 3556667777777777765433
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-24 Score=228.90 Aligned_cols=191 Identities=23% Similarity=0.406 Sum_probs=150.9
Q ss_pred hHHHHHHH---HHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHH
Q 011149 6 FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (492)
Q Consensus 6 F~~~l~~I---l~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 82 (492)
|+.++..| ...+| +.++++||||+++.+...+..++.-+....+... ....++. +.......+...+..++
T Consensus 146 frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~nl~--~~v~~~~~~~~~l~~~l 219 (591)
T TIGR01389 146 FRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITS---FDRPNLR--FSVVKKNNKQKFLLDYL 219 (591)
T ss_pred cHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC---CCCCCcE--EEEEeCCCHHHHHHHHH
Confidence 66665554 44454 4569999999999988777767653221112111 1122332 22223345666666666
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
... ...++||||+|++.|+.+++.|.. .+.+..+|++|++++|+.+++.|++|+++|||||+++++|||+|+|++||+
T Consensus 220 ~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~ 298 (591)
T TIGR01389 220 KKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH 298 (591)
T ss_pred Hhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE
Confidence 554 357899999999999999999985 789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHH
Q 011149 162 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (492)
Q Consensus 162 ~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (492)
|++|.+.+.|+|++||+||.|..+.|++++++.+...++.+.
T Consensus 299 ~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 299 YDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred cCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 999999999999999999999999999999998887766654
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=234.55 Aligned_cols=253 Identities=23% Similarity=0.350 Sum_probs=167.1
Q ss_pred hHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcC--CCceEEeecccccccccceEEEEEEcCccc----------
Q 011149 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATS---------- 73 (492)
Q Consensus 6 F~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~---------- 73 (492)
|...|+.|...++.+.|+|+||||+++ .+++++ |+. +++.| +...... ...++.. +......
T Consensus 145 Lel~LeRL~~l~~~~~QrIgLSATI~n-~eevA~-~L~g~~pv~I--v~~~~~r-~~~l~v~-vp~~d~~~~~~~~~~~~ 218 (1490)
T PRK09751 145 LALSLERLDALLHTSAQRIGLSATVRS-ASDVAA-FLGGDRPVTV--VNPPAMR-HPQIRIV-VPVANMDDVSSVASGTG 218 (1490)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHHH-HhcCCCCEEE--ECCCCCc-ccceEEE-EecCchhhccccccccc
Confidence 556778888888888999999999987 456664 554 24433 2211111 1222221 2111100
Q ss_pred -----------HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHccc------------------------------
Q 011149 74 -----------KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII------------------------------ 112 (492)
Q Consensus 74 -----------k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~------------------------------ 112 (492)
...+...++..+..+.++||||||++.|+.++..|++.+
T Consensus 219 ~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1490)
T PRK09751 219 EDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQS 298 (1490)
T ss_pred cccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhcccc
Confidence 011223445444456899999999999999999887421
Q ss_pred ----ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccC-CCCCeE
Q 011149 113 ----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA-GKEGTA 187 (492)
Q Consensus 113 ----~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~-g~~g~~ 187 (492)
.+.++||+|++++|..++++|++|++++||||+++++||||++|++||||+.|.++.+|+||+||+||. +..+.+
T Consensus 299 ~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~g 378 (1490)
T PRK09751 299 SDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKG 378 (1490)
T ss_pred ccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEE
Confidence 156799999999999999999999999999999999999999999999999999999999999999996 333445
Q ss_pred EEecChhhHHHHH---HHHHHhCCCceecCCCCHH-HHHHHHHHHHHHHhccCCccchhhhHHHHHHH--HhhhCHHHHH
Q 011149 188 ILMFTSSQRRTVR---SLERDVGCKFEFVSPPVVE-DVLESSAEQVVATLNGVHPESVEFFTPTAQRL--IEEKGTDALA 261 (492)
Q Consensus 188 i~l~~~~e~~~~~---~l~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l--~~~~~~~~l~ 261 (492)
+++.... ...++ .++..+...++.+.+|... +++...+-.++.. .... .+...+.+... +..++.+.+.
T Consensus 379 li~p~~r-~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~-~~~~---~d~l~~~vrra~pf~~L~~~~f~ 453 (1490)
T PRK09751 379 LFFPRTR-RDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAM-DALQ---VDEWYSRVRRAAPWKDLPRRVFD 453 (1490)
T ss_pred EEEeCcH-HHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhc-CCCC---HHHHHHHhhccCCcccCCHHHHH
Confidence 5443322 22222 3677778888887666443 5665544443332 2222 22222222221 2346677777
Q ss_pred HHHHHHcC
Q 011149 262 AALAQLSG 269 (492)
Q Consensus 262 ~al~~~~~ 269 (492)
+.|-.|.+
T Consensus 454 ~vl~~L~~ 461 (1490)
T PRK09751 454 ATLDMLSG 461 (1490)
T ss_pred HHHHHHhc
Confidence 77777764
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=208.28 Aligned_cols=191 Identities=28% Similarity=0.433 Sum_probs=158.6
Q ss_pred CCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecc--cccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEE
Q 011149 17 LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGN--QDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVF 94 (492)
Q Consensus 17 ~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~--~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF 94 (492)
+++..+.++||||+...-.++...-+..|....+... ..-.++..+.++++.+....|...+..++... +-.++|+|
T Consensus 357 ~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf 435 (620)
T KOG0350|consen 357 LYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCF 435 (620)
T ss_pred cCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEE
Confidence 4456678999999976666666666777765443311 12235667788888888877887888888765 55799999
Q ss_pred eCChHHHHHHHHHHH-c----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChh
Q 011149 95 TQTKRDADEVSLALT-S----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169 (492)
Q Consensus 95 ~~t~~~~~~l~~~l~-~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~ 169 (492)
+++.+.+..++..|. . .+.+..+.|.++...|.+.+++|..|+++||||||+++||||+.+|+.|||||+|.+..
T Consensus 436 ~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~k 515 (620)
T KOG0350|consen 436 VNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDK 515 (620)
T ss_pred ecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhh
Confidence 999999999999987 2 35677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCC
Q 011149 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 208 (492)
Q Consensus 170 ~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~ 208 (492)
+|+||+|||+|+|+.|.|++++...+.+.+.++.+....
T Consensus 516 tyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 516 TYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred HHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 999999999999999999999999888776666655543
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=225.12 Aligned_cols=191 Identities=18% Similarity=0.283 Sum_probs=148.1
Q ss_pred HHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcc
Q 011149 8 EDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK 87 (492)
Q Consensus 8 ~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~ 87 (492)
....++++.++.+.|+++||||+++....++...+.++..|.... .. ...+++++.... ...+...++..+..
T Consensus 587 v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p--~~--R~~V~t~v~~~~---~~~i~~~i~~el~~ 659 (926)
T TIGR00580 587 VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPP--ED--RLPVRTFVMEYD---PELVREAIRRELLR 659 (926)
T ss_pred hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCC--CC--ccceEEEEEecC---HHHHHHHHHHHHHc
Confidence 345667788888999999999987776666655666766665321 11 123444443322 12222334444556
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~ 164 (492)
..+++||||+++.++.+++.|.+ .+.+..+||+|++.+|++++++|++|+++|||||+++++|||+|++++||+++.
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecC
Confidence 78999999999999999999986 467999999999999999999999999999999999999999999999999998
Q ss_pred CC-ChhHHHHHhhhcccCCCCCeEEEecChh------hHHHHHHHHHH
Q 011149 165 PN-DPETFVHRSGRTGRAGKEGTAILMFTSS------QRRTVRSLERD 205 (492)
Q Consensus 165 P~-~~~~y~qr~GR~gR~g~~g~~i~l~~~~------e~~~~~~l~~~ 205 (492)
|. ...+|+||+||+||.++.|.|++++.+. ..+.++.|++.
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 75 6789999999999999999999998643 34455555443
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=227.11 Aligned_cols=239 Identities=18% Similarity=0.339 Sum_probs=164.6
Q ss_pred CCCCChHHH-HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCccc---HHH
Q 011149 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS---KRT 76 (492)
Q Consensus 1 mL~~GF~~~-l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~ 76 (492)
||+++|... |..++... ++.|+|+||||++. ..+++.|.+.| .|.+.+.. ..++++|....... +.+
T Consensus 199 sLn~DfLLg~Lk~lL~~r-pdlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~-----~pVei~y~p~~~~~~~~~~d 269 (1294)
T PRK11131 199 SLNIDFILGYLKELLPRR-PDLKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT-----YPVEVRYRPIVEEADDTERD 269 (1294)
T ss_pred ccccchHHHHHHHhhhcC-CCceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc-----ccceEEEeecccccchhhHH
Confidence 688898763 44554433 46899999999975 46666554444 56554221 22455665543221 233
Q ss_pred HHHHHHH---HH--ccCCeEEEEeCChHHHHHHHHHHHc-cc---ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc
Q 011149 77 ILSDLIT---VY--AKGGKTIVFTQTKRDADEVSLALTS-II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (492)
Q Consensus 77 ~l~~ll~---~~--~~~~~~iVF~~t~~~~~~l~~~l~~-~~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (492)
.+..++. .+ ...+.+|||++++.+++.+++.|.+ .+ .+..+||+|++++|.++++. .+..+||||||++
T Consensus 270 ~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIA 347 (1294)
T PRK11131 270 QLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVA 347 (1294)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHH
Confidence 3333332 22 2357899999999999999999985 33 47789999999999999987 4678999999999
Q ss_pred cccCCCCCcCEEEecC---------------CC---CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCC
Q 011149 148 ARGLDIPNVDLIIHYE---------------LP---NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (492)
Q Consensus 148 ~~Gidi~~v~~VI~~~---------------~P---~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (492)
++|||||+|++||+++ +| .|.++|+||+|||||. .+|.||.||+..+...+ ..
T Consensus 348 EtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~---~~----- 418 (1294)
T PRK11131 348 ETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSR---PE----- 418 (1294)
T ss_pred hhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhh---hc-----
Confidence 9999999999999986 34 4568999999999999 69999999998764322 11
Q ss_pred ceecCCCCHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCC
Q 011149 210 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF 270 (492)
Q Consensus 210 ~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~ 270 (492)
-+..||+...+..++..+......++..| .+++.+.++.+..++..|..+
T Consensus 419 ------~~~PEIlR~~L~~viL~lk~lgl~di~~F-----~fldpP~~~~i~~al~~L~~L 468 (1294)
T PRK11131 419 ------FTDPEILRTNLASVILQMTALGLGDIAAF-----PFVEAPDKRNIQDGVRLLEEL 468 (1294)
T ss_pred ------ccCCccccCCHHHHHHHHHHcCCCCccee-----eCCCCCCHHHHHHHHHHHHHC
Confidence 12234445555555555555544444444 356666777777777666533
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-22 Score=221.89 Aligned_cols=251 Identities=19% Similarity=0.270 Sum_probs=153.8
Q ss_pred HHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCC------CceEEeecccccccccceEEEEE-------EcCcccHH
Q 011149 9 DVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDN------PLNIDLVGNQDEKLAEGIKLYAI-------STTATSKR 75 (492)
Q Consensus 9 ~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~------~~~i~~~~~~~~~~~~~i~~~~~-------~~~~~~k~ 75 (492)
.++.|....+...|+|++|||+++ ...+++ ++.. +..+.++.... ...+..... ........
T Consensus 196 ~L~rL~~l~~~~~q~IglSATl~~-~~~va~-~L~~~~~~~~~r~~~iv~~~~---~k~~~i~v~~p~~~l~~~~~~~~~ 270 (876)
T PRK13767 196 SLERLEELAGGEFVRIGLSATIEP-LEEVAK-FLVGYEDDGEPRDCEIVDARF---VKPFDIKVISPVDDLIHTPAEEIS 270 (876)
T ss_pred HHHHHHHhcCCCCeEEEEecccCC-HHHHHH-HhcCccccCCCCceEEEccCC---CccceEEEeccCccccccccchhH
Confidence 344555555568899999999976 334443 3321 22222221111 011111111 01111111
Q ss_pred -HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc
Q 011149 76 -TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (492)
Q Consensus 76 -~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (492)
.++..+.+.+....++||||||++.|+.++..|.+. ..+.++||+|++++|..++++|++|+++|||||+++
T Consensus 271 ~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~L 350 (876)
T PRK13767 271 EALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSL 350 (876)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChH
Confidence 222223333345679999999999999999999852 468999999999999999999999999999999999
Q ss_pred cccCCCCCcCEEEecCCCCChhHHHHHhhhcccC-CCCCeEEEecCh-hhH-HHHHHHHHHhCCCceecCCCC-HHHHHH
Q 011149 148 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA-GKEGTAILMFTS-SQR-RTVRSLERDVGCKFEFVSPPV-VEDVLE 223 (492)
Q Consensus 148 ~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~-g~~g~~i~l~~~-~e~-~~~~~l~~~~~~~~~~~~~p~-~~~~~~ 223 (492)
++|||+|+|++||+|+.|.++.+|+||+||+||. +.....++++.. .+. +....++......++.+.+|. .-+++.
T Consensus 351 e~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~ 430 (876)
T PRK13767 351 ELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLA 430 (876)
T ss_pred HhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHH
Confidence 9999999999999999999999999999999986 433444444433 222 222233444555566655553 344544
Q ss_pred HHHHHHHHHhccCCccchhhhHHHHHH--HHhhhCHHHHHHHHHHHc
Q 011149 224 SSAEQVVATLNGVHPESVEFFTPTAQR--LIEEKGTDALAAALAQLS 268 (492)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~f~~~a~~--l~~~~~~~~l~~al~~~~ 268 (492)
..+..++.. .....+. ..+.... ....++.+.+...|-.|.
T Consensus 431 q~i~~~~~~-~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~l~~l~ 473 (876)
T PRK13767 431 QHIVGMAIE-RPWDIEE---AYNIVRRAYPYRDLSDEDFESVLRYLA 473 (876)
T ss_pred HHHHHHHHc-CCCCHHH---HHHHHhccCCcccCCHHHHHHHHHHHh
Confidence 433333222 1122211 1111111 123456677777666665
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=208.37 Aligned_cols=192 Identities=26% Similarity=0.394 Sum_probs=149.7
Q ss_pred hHHHHHHH---HHhCCCCCcEEEEeeeCChHHHHHHHHHcC--CCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 6 FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 6 F~~~l~~I---l~~~~~~~q~ll~SAT~p~~i~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
|+++...| ...+| +.++++++||.++.+.+.+...|. ++..+... ...+++.+...... ..+.+.+ -
T Consensus 150 FRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s-----fdRpNi~~~v~~~~-~~~~q~~-f 221 (590)
T COG0514 150 FRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGS-----FDRPNLALKVVEKG-EPSDQLA-F 221 (590)
T ss_pred cCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec-----CCCchhhhhhhhcc-cHHHHHH-H
Confidence 76666554 44455 899999999999998887766665 33333221 11233322222221 1222222 2
Q ss_pred HHH-HHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 81 LIT-VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 81 ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
+.+ ........||||.|++.++.+++.|.. ++.+..+|++|+.++|+.+.++|.+++++|+|||.++.+|||.|+|.+
T Consensus 222 i~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRf 301 (590)
T COG0514 222 LATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRF 301 (590)
T ss_pred HHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceE
Confidence 221 123456789999999999999999996 799999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHH
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~ 205 (492)
|||||+|.++++|.|-+||+||.|.+..|++|+++.|....+.+...
T Consensus 302 ViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 302 VIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999998777776554
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=204.93 Aligned_cols=178 Identities=24% Similarity=0.302 Sum_probs=129.7
Q ss_pred HHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEE--EcCcccHHHHHHHHHHHHc
Q 011149 10 VELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI--STTATSKRTILSDLITVYA 86 (492)
Q Consensus 10 l~~Il~~~~-~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~--~~~~~~k~~~l~~ll~~~~ 86 (492)
+..+++.++ .+.|+++||||+|+.+.++++.+...+....+. .........+.+. ......+...+..+++...
T Consensus 144 l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 220 (358)
T TIGR01587 144 ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLD---LKEERRFERHRFIKIESDKVGEISSLERLLEFIK 220 (358)
T ss_pred HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCC---CccccccccccceeeccccccCHHHHHHHHHHhh
Confidence 555555554 478999999999988877776554332211111 0000001112221 1222345667777777666
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-c--ceeeecCCCCHHHHHH----HHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI-I--ASEALHGDISQHQRER----TLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-~--~~~~lhg~~~~~~r~~----~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
.+.++||||+|++.|+.+++.|.+. . .+..+||+|++.+|.+ +++.|++++.+|||||+++++||||+ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 6789999999999999999999863 3 4899999999999976 48999999999999999999999995 8899
Q ss_pred EecCCCCChhHHHHHhhhcccCCCC----CeEEEecCh
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKE----GTAILMFTS 193 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~----g~~i~l~~~ 193 (492)
|++..| +++|+||+||+||.|+. +.++++...
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 998776 78999999999998854 356666554
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=225.86 Aligned_cols=189 Identities=16% Similarity=0.236 Sum_probs=146.3
Q ss_pred HHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCe
Q 011149 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (492)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 90 (492)
.++++.++.++|+++||||+++.+..++...+.++..|..... . ...++++...... ......++..+....+
T Consensus 739 ~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~--~--r~~v~~~~~~~~~---~~~k~~il~el~r~gq 811 (1147)
T PRK10689 739 KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--R--RLAVKTFVREYDS---LVVREAILREILRGGQ 811 (1147)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC--C--CCCceEEEEecCc---HHHHHHHHHHHhcCCe
Confidence 4567888999999999999888888888888888887764321 1 1234444333221 1223344444445689
Q ss_pred EEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCC-C
Q 011149 91 TIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP-N 166 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P-~ 166 (492)
++||||+++.++.+++.|.+ .+.+.++||+|++++|++++++|++|+++|||||+++++|||+|+|++||..+.. .
T Consensus 812 v~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~f 891 (1147)
T PRK10689 812 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 (1147)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCC
Confidence 99999999999999999986 3578999999999999999999999999999999999999999999999944332 3
Q ss_pred ChhHHHHHhhhcccCCCCCeEEEecChh------hHHHHHHHHHHh
Q 011149 167 DPETFVHRSGRTGRAGKEGTAILMFTSS------QRRTVRSLERDV 206 (492)
Q Consensus 167 ~~~~y~qr~GR~gR~g~~g~~i~l~~~~------e~~~~~~l~~~~ 206 (492)
+...|+||+||+||.++.|.|++++.+. ....++.|++..
T Consensus 892 glaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~ 937 (1147)
T PRK10689 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 (1147)
T ss_pred CHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhc
Confidence 4568999999999999999999997542 345566665543
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-23 Score=189.04 Aligned_cols=171 Identities=27% Similarity=0.564 Sum_probs=143.3
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 83 (492)
...+.|+++|++..|.+.|+++||||++++|+.++++||.+|..|-+. .....+...++++|+......|...|.++|+
T Consensus 201 lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vD-dE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd 279 (387)
T KOG0329|consen 201 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVD-DEAKLTLHGLQQYYVKLKENEKNRKLNDLLD 279 (387)
T ss_pred HHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhcc-chhhhhhhhHHHHHHhhhhhhhhhhhhhhhh
Confidence 356889999999999999999999999999999999999999988654 3445566778899999999999999999998
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecC
Q 011149 84 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE 163 (492)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~ 163 (492)
.+. -.+++||+.+... | + | ..+ ||||++..||+||..|++|+|||
T Consensus 280 ~Le-FNQVvIFvKsv~R-------l-------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYd 324 (387)
T KOG0329|consen 280 VLE-FNQVVIFVKSVQR-------L-------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYD 324 (387)
T ss_pred hhh-hcceeEeeehhhh-------h-------------h----------h---hhh-hHHhhhhccccCcccceeeeccC
Confidence 874 4799999987654 0 0 2 123 89999999999999999999999
Q ss_pred CCCChhHHHHHhhhcccCCCCCeEEEecChh-hHHHHHHHHHHhCCCc
Q 011149 164 LPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKF 210 (492)
Q Consensus 164 ~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~ 210 (492)
+|.+.++|+||++|+||.|.+|.+|+|++.. +...+..+...+...+
T Consensus 325 mp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i 372 (387)
T KOG0329|consen 325 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNI 372 (387)
T ss_pred CCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccH
Confidence 9999999999999999999999999999865 4455555555544433
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=217.95 Aligned_cols=240 Identities=17% Similarity=0.293 Sum_probs=166.0
Q ss_pred CCCCChHHH-HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc------cc
Q 011149 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA------TS 73 (492)
Q Consensus 1 mL~~GF~~~-l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~------~~ 73 (492)
||+++|... ++.|+... ++.|+|+||||++. ..+++.| .+...|.+.+.. ..++.+|..... .+
T Consensus 192 sL~~D~LL~lLk~il~~r-pdLKlIlmSATld~--~~fa~~F-~~apvI~V~Gr~-----~PVev~Y~~~~~~~~~~~~~ 262 (1283)
T TIGR01967 192 SLNIDFLLGYLKQLLPRR-PDLKIIITSATIDP--ERFSRHF-NNAPIIEVSGRT-----YPVEVRYRPLVEEQEDDDLD 262 (1283)
T ss_pred hccchhHHHHHHHHHhhC-CCCeEEEEeCCcCH--HHHHHHh-cCCCEEEECCCc-----ccceeEEecccccccchhhh
Confidence 578888765 67776655 47899999999974 4566555 444445553221 123344443321 12
Q ss_pred HHHHHHHHHHHH--ccCCeEEEEeCChHHHHHHHHHHHc-c---cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc
Q 011149 74 KRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-I---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (492)
Q Consensus 74 k~~~l~~ll~~~--~~~~~~iVF~~t~~~~~~l~~~l~~-~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (492)
+.+.+..++..+ ...+.+|||++++.+++.+++.|.+ . +.+..|||.|++++|.++++.+. ..+||||||++
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~--~rkIVLATNIA 340 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS--GRRIVLATNVA 340 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC--CceEEEeccHH
Confidence 333333333332 2357899999999999999999985 2 45889999999999999987653 46899999999
Q ss_pred cccCCCCCcCEEEecCCC------------------CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCC
Q 011149 148 ARGLDIPNVDLIIHYELP------------------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (492)
Q Consensus 148 ~~Gidi~~v~~VI~~~~P------------------~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (492)
++|||||+|++||+++++ .|.++|+||+||+||.+ +|.||.|++..+...+. ..
T Consensus 341 EtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~~---~~---- 412 (1283)
T TIGR01967 341 ETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSRP---EF---- 412 (1283)
T ss_pred HhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhhh---hc----
Confidence 999999999999998853 36689999999999997 99999999987653221 11
Q ss_pred ceecCCCCHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCC
Q 011149 210 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (492)
Q Consensus 210 ~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~ 271 (492)
+..|++...+..++..+......++..| .+++.+..+.+..++..|..+.
T Consensus 413 -------~~PEIlR~~L~~viL~l~~lg~~di~~f-----~fldpP~~~~i~~A~~~L~~LG 462 (1283)
T TIGR01967 413 -------TDPEILRTNLASVILQMLALRLGDIAAF-----PFIEAPDPRAIRDGFRLLEELG 462 (1283)
T ss_pred -------cCcccccccHHHHHHHHHhcCCCCcccc-----cCCCCCCHHHHHHHHHHHHHCC
Confidence 1234555555566666655443334344 3566777778877777765443
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-21 Score=210.77 Aligned_cols=190 Identities=25% Similarity=0.381 Sum_probs=133.8
Q ss_pred CCCChHHHHHHHHHhC---CCCCcEEEEeeeCChHHHHHHHHHcCC--------CceEEeecccccccccceEEEEEEcC
Q 011149 2 LAVGFEEDVELILENL---PPKRQSMLFSATMPSWVKKLSRKYLDN--------PLNIDLVGNQDEKLAEGIKLYAISTT 70 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~---~~~~q~ll~SAT~p~~i~~~~~~~~~~--------~~~i~~~~~~~~~~~~~i~~~~~~~~ 70 (492)
++.++...++.++..+ +++.|+|++|||+|+. .++++ |+.. |+.+...............+..+..
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~- 226 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELAD-WLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEV- 226 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHH-HhCCCcccCCCCCCCCeeeEecCCeeccccccccCCC-
Confidence 4567777777776554 5789999999999863 34443 4431 1111100000000000000111111
Q ss_pred cccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-------------------------------------cc
Q 011149 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------------IA 113 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-------------------------------------~~ 113 (492)
..+...+..+++.+....++||||+|++.|+.++..|... ..
T Consensus 227 -~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 227 -PSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred -ccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 1223344444554556789999999999999988877531 25
Q ss_pred eeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe----cC-----CCCChhHHHHHhhhcccCCCC
Q 011149 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-----LPNDPETFVHRSGRTGRAGKE 184 (492)
Q Consensus 114 ~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----~~-----~P~~~~~y~qr~GR~gR~g~~ 184 (492)
+.++|++|++.+|..+++.|++|.++|||||+++++|||+|.+++||+ || .|.+..+|+||+|||||.|..
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 778999999999999999999999999999999999999999999997 76 689999999999999999854
Q ss_pred --CeEEEecChhh
Q 011149 185 --GTAILMFTSSQ 195 (492)
Q Consensus 185 --g~~i~l~~~~e 195 (492)
|.+++++...+
T Consensus 386 ~~G~~ii~~~~~~ 398 (737)
T PRK02362 386 PYGEAVLLAKSYD 398 (737)
T ss_pred CCceEEEEecCch
Confidence 89999987643
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-21 Score=204.06 Aligned_cols=169 Identities=18% Similarity=0.162 Sum_probs=135.8
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHc-cCCeEEEEeCChHH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRD 100 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~ 100 (492)
++..||||.+....++.+.|..++..|.... .......+.++.+...+|...|.+++.... ...++||||+|++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k----p~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~ 485 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNR----PSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAA 485 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCC----CccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 5567999999988889998888876654321 111223334555666778888888876642 35789999999999
Q ss_pred HHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC---CcC-----EEEecCCCCChhHH
Q 011149 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETF 171 (492)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~---~v~-----~VI~~~~P~~~~~y 171 (492)
++.++..|.+ ++++..||++++ +|+..+..|+.+...|+||||+++||+||+ +|. |||+|++|.+...|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y 563 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARID 563 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHH
Confidence 9999999985 899999999865 445555555555667999999999999999 676 99999999999999
Q ss_pred HHHhhhcccCCCCCeEEEecChhhH
Q 011149 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 172 ~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
+||+|||||.|.+|.+++|++..|.
T Consensus 564 ~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 564 RQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHhcccccCCCCCeEEEEEechhHH
Confidence 9999999999999999999998663
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=206.86 Aligned_cols=206 Identities=23% Similarity=0.304 Sum_probs=139.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccce-EEEEEEcCcc--cH--H
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI-KLYAISTTAT--SK--R 75 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i-~~~~~~~~~~--~k--~ 75 (492)
|++.++...++.|+..++...|+|++|||+++ ..++++ |+....... . .........+ .+.++..... .+ .
T Consensus 150 l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~-~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T PRK00254 150 IGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVVS-D-WRPVKLRKGVFYQGFLFWEDGKIERFPN 225 (720)
T ss_pred cCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccccC-C-CCCCcceeeEecCCeeeccCcchhcchH
Confidence 34567888999999999999999999999986 355654 554322111 0 0000000011 0111111111 11 1
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc----------------------------------ccceeeecCCC
Q 011149 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----------------------------------IIASEALHGDI 121 (492)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----------------------------------~~~~~~lhg~~ 121 (492)
.....+.+.+..+.++||||+|++.|+.++..|.. ...+.++|++|
T Consensus 226 ~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 226 SWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 11112223334567999999999999887766632 12488999999
Q ss_pred CHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe-------cCCCC-ChhHHHHHhhhcccCC--CCCeEEEec
Q 011149 122 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-------YELPN-DPETFVHRSGRTGRAG--KEGTAILMF 191 (492)
Q Consensus 122 ~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~-------~~~P~-~~~~y~qr~GR~gR~g--~~g~~i~l~ 191 (492)
++++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|+||+||+||.| ..|.+++++
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVA 385 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEe
Confidence 9999999999999999999999999999999999999994 55544 5779999999999975 679999998
Q ss_pred ChhhHHHHHHHHHHhCCCcee
Q 011149 192 TSSQRRTVRSLERDVGCKFEF 212 (492)
Q Consensus 192 ~~~e~~~~~~l~~~~~~~~~~ 212 (492)
...+... .+++++..+++.
T Consensus 386 ~~~~~~~--~~~~~~~~~pe~ 404 (720)
T PRK00254 386 TTEEPSK--LMERYIFGKPEK 404 (720)
T ss_pred cCcchHH--HHHHHHhCCchh
Confidence 7654221 234444444443
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.2e-21 Score=209.42 Aligned_cols=163 Identities=17% Similarity=0.243 Sum_probs=138.1
Q ss_pred cHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHH-c-ccceeeecCCCCHHHHHHHHhhhcCC--CeEEEEeccccc
Q 011149 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-S-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATDVAA 148 (492)
Q Consensus 73 ~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-~-~~~~~~lhg~~~~~~r~~~~~~F~~g--~~~iLVaT~~~~ 148 (492)
.|.+.|.++++.. ...|+||||+++..+..|++.|. . ++.+..+||+|++.+|+++++.|+++ ..+|||||++++
T Consensus 479 ~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 479 PRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 3566666666654 36799999999999999999995 3 78999999999999999999999984 699999999999
Q ss_pred ccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCC--CceecCCCCHHHHHHHHH
Q 011149 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC--KFEFVSPPVVEDVLESSA 226 (492)
Q Consensus 149 ~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~--~~~~~~~p~~~~~~~~~~ 226 (492)
+|+|++.+++|||||+|++++.|+||+||++|.|+++.+.+++...+....+.|.+.+.. .+-...+|+..++.....
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~ 637 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFG 637 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999888777766555556666665554 566678888888888888
Q ss_pred HHHHHHhccC
Q 011149 227 EQVVATLNGV 236 (492)
Q Consensus 227 ~~~~~~l~~~ 236 (492)
+.+...+...
T Consensus 638 ~~l~~~l~~~ 647 (956)
T PRK04914 638 DELIPYLASP 647 (956)
T ss_pred HHHHHHHhCC
Confidence 7777777543
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=204.05 Aligned_cols=176 Identities=18% Similarity=0.287 Sum_probs=129.2
Q ss_pred HHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCe
Q 011149 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (492)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 90 (492)
...+...+...|+++||||+.+....+. +..+.....+...+.. ...+...++ ....+..++..+........+
T Consensus 400 r~~l~~~~~~~~iL~~SATp~prtl~~~--~~g~~~~s~i~~~p~~--r~~i~~~~~--~~~~~~~~~~~i~~~~~~g~q 473 (681)
T PRK10917 400 RLALREKGENPHVLVMTATPIPRTLAMT--AYGDLDVSVIDELPPG--RKPITTVVI--PDSRRDEVYERIREEIAKGRQ 473 (681)
T ss_pred HHHHHhcCCCCCEEEEeCCCCHHHHHHH--HcCCCceEEEecCCCC--CCCcEEEEe--CcccHHHHHHHHHHHHHcCCc
Confidence 3445555667899999999866554443 2232221111111111 122433333 233344444555555556789
Q ss_pred EEEEeCCh--------HHHHHHHHHHHcc---cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 91 TIVFTQTK--------RDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 91 ~iVF~~t~--------~~~~~l~~~l~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++|||++. ..++.+++.|.+. +.+..+||+|++++|++++++|++|+++|||||+++++|||+|++++|
T Consensus 474 ~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~V 553 (681)
T PRK10917 474 AYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVM 553 (681)
T ss_pred EEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEE
Confidence 99999954 4566777777753 579999999999999999999999999999999999999999999999
Q ss_pred EecCCCC-ChhHHHHHhhhcccCCCCCeEEEecC
Q 011149 160 IHYELPN-DPETFVHRSGRTGRAGKEGTAILMFT 192 (492)
Q Consensus 160 I~~~~P~-~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (492)
|+++.|. ....|.||+||+||.+.+|.|++++.
T Consensus 554 Ii~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 554 VIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999997 57888999999999999999999995
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-21 Score=186.77 Aligned_cols=189 Identities=31% Similarity=0.495 Sum_probs=149.6
Q ss_pred CCCCChHHHHHHHHHhCCC------CCcEEEEeeeCC-hHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcc-
Q 011149 1 MLAVGFEEDVELILENLPP------KRQSMLFSATMP-SWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT- 72 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~------~~q~ll~SAT~p-~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~- 72 (492)
+|..|+-+.|..+..++|. ..|.+++|||+. -+|+.+.++.|..|..|++.. ...+++.+.+....+...
T Consensus 375 lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkg--eD~vpetvHhvv~lv~p~~ 452 (725)
T KOG0349|consen 375 LLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKG--EDLVPETVHHVVKLVCPSV 452 (725)
T ss_pred hhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccc--ccccchhhccceeecCCcc
Confidence 3567888888888888873 479999999985 467788889999999998853 333444444443322211
Q ss_pred c-HHHHH----------------------------HHH---------HHHHccCCeEEEEeCChHHHHHHHHHHHc----
Q 011149 73 S-KRTIL----------------------------SDL---------ITVYAKGGKTIVFTQTKRDADEVSLALTS---- 110 (492)
Q Consensus 73 ~-k~~~l----------------------------~~l---------l~~~~~~~~~iVF~~t~~~~~~l~~~l~~---- 110 (492)
+ ...-| ..| ++.+ .-.++||||.|+.+|+.|...+.+
T Consensus 453 d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer~~~qkgg~ 531 (725)
T KOG0349|consen 453 DGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLERMMNQKGGK 531 (725)
T ss_pred CccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHHHHHHcCCc
Confidence 0 11111 011 1111 235899999999999999999984
Q ss_pred ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEe
Q 011149 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (492)
Q Consensus 111 ~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (492)
.+.++++||+..+.+|.+.++.|+...++.|||||+++|||||..+-+|||.-+|.+...|+||+||+||+.+-|.+|.+
T Consensus 532 ~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaisl 611 (725)
T KOG0349|consen 532 HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISL 611 (725)
T ss_pred cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999988888887
Q ss_pred cC
Q 011149 191 FT 192 (492)
Q Consensus 191 ~~ 192 (492)
+.
T Consensus 612 va 613 (725)
T KOG0349|consen 612 VA 613 (725)
T ss_pred ee
Confidence 64
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-20 Score=197.64 Aligned_cols=165 Identities=22% Similarity=0.317 Sum_probs=123.0
Q ss_pred CCcEEEEeeeCChHHHHHHHHHcCC--CceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCC
Q 011149 20 KRQSMLFSATMPSWVKKLSRKYLDN--PLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 97 (492)
Q Consensus 20 ~~q~ll~SAT~p~~i~~~~~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t 97 (492)
..|+++||||+.+....+. ...+ ...++.. .. ....+..+++ ....+..++..+.+.+....+++|||++
T Consensus 386 ~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~--p~--~r~~i~~~~~--~~~~~~~~~~~i~~~l~~g~q~~v~~~~ 457 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALT--VYGDLDTSIIDEL--PP--GRKPITTVLI--KHDEKDIVYEFIEEEIAKGRQAYVVYPL 457 (630)
T ss_pred CCCEEEEeCCCCcHHHHHH--hcCCcceeeeccC--CC--CCCceEEEEe--CcchHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 6899999999755443332 2222 1122111 11 1122333332 2233444555555555567899999987
Q ss_pred h--------HHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCC
Q 011149 98 K--------RDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN 166 (492)
Q Consensus 98 ~--------~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~ 166 (492)
. ..++.+++.|.+ .+.+..+||+|++++|++++++|++|+.+|||||+++++|||+|++++||+++.|.
T Consensus 458 i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r 537 (630)
T TIGR00643 458 IEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAER 537 (630)
T ss_pred ccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCc
Confidence 6 456677777764 46789999999999999999999999999999999999999999999999999986
Q ss_pred -ChhHHHHHhhhcccCCCCCeEEEecC
Q 011149 167 -DPETFVHRSGRTGRAGKEGTAILMFT 192 (492)
Q Consensus 167 -~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (492)
....|.||+||+||.+++|.|++++.
T Consensus 538 ~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 538 FGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 67888999999999999999999983
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-19 Score=203.48 Aligned_cols=163 Identities=24% Similarity=0.307 Sum_probs=132.3
Q ss_pred CChH-HHHHHHHHhCCC------------------------CCcEEEEeeeCChH-HHHHHHHHcCCCceEEeecccccc
Q 011149 4 VGFE-EDVELILENLPP------------------------KRQSMLFSATMPSW-VKKLSRKYLDNPLNIDLVGNQDEK 57 (492)
Q Consensus 4 ~GF~-~~l~~Il~~~~~------------------------~~q~ll~SAT~p~~-i~~~~~~~~~~~~~i~~~~~~~~~ 57 (492)
|||. ++|+.|+..+|. ..|+++||||+++. +.. .+++++..+.+.. ...
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~--~~~ 301 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGS--PVF 301 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecC--ccc
Confidence 8995 789999988875 78999999999864 332 2344554455432 233
Q ss_pred cccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHH---HHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhh
Q 011149 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD---ADEVSLALTS-IIASEALHGDISQHQRERTLNGF 133 (492)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~---~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F 133 (492)
...++.+.++.+. ++...|..++..+ +.++||||+|+.. |+.+++.|.. ++.+..+||+| ++.+++|
T Consensus 302 ~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 302 YLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred ccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 4567888887665 6777777887765 3589999999877 9999999996 79999999999 2346999
Q ss_pred cCCCeEEEEe----cccccccCCCCC-cCEEEecCCCC------ChhHHHHHhhhccc
Q 011149 134 RQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELPN------DPETFVHRSGRTGR 180 (492)
Q Consensus 134 ~~g~~~iLVa----T~~~~~Gidi~~-v~~VI~~~~P~------~~~~y~qr~GR~gR 180 (492)
++|+++|||| ||+++||||+|+ |.+||||++|. ..+.|.||++|+..
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 9999999999 699999999999 89999999998 77899999999864
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-19 Score=193.69 Aligned_cols=186 Identities=23% Similarity=0.328 Sum_probs=124.5
Q ss_pred CCChHHHHHHHHH---hCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceE---EEEEEcCcccHHH
Q 011149 3 AVGFEEDVELILE---NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIK---LYAISTTATSKRT 76 (492)
Q Consensus 3 ~~GF~~~l~~Il~---~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~---~~~~~~~~~~k~~ 76 (492)
|.++...++.++. .++++.|+|++|||+++ ..++++ |+..+. +... .........+. ..+..........
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~-~~~~-~r~vpl~~~i~~~~~~~~~~~~~~~~~ 224 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASL-IKSN-FRPVPLKLGILYRKRLILDGYERSQVD 224 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCc-cCCC-CCCCCeEEEEEecCeeeeccccccccc
Confidence 4555556666654 45678999999999986 355554 544222 1100 00000000010 0111111111111
Q ss_pred HHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHcc--------------------------cceeeecCCCCHHHHHHH
Q 011149 77 ILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI--------------------------IASEALHGDISQHQRERT 129 (492)
Q Consensus 77 ~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~~--------------------------~~~~~lhg~~~~~~r~~~ 129 (492)
+..++.. ....+++||||+|++.++.++..|... ..+..+|++|++++|..+
T Consensus 225 -~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~v 303 (674)
T PRK01172 225 -INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFI 303 (674)
T ss_pred -HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHH
Confidence 2233332 345689999999999999999888642 136789999999999999
Q ss_pred HhhhcCCCeEEEEecccccccCCCCCcCEEEecC---------CCCChhHHHHHhhhcccCC--CCCeEEEecChh
Q 011149 130 LNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE---------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (492)
Q Consensus 130 ~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~---------~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~ 194 (492)
++.|++|.++|||||+++++|+|+|+..+|| ++ .|.++.+|.||+|||||.| ..|.+++++...
T Consensus 304 e~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 304 EEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 9999999999999999999999999875555 33 3568899999999999998 467788876544
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=188.43 Aligned_cols=169 Identities=18% Similarity=0.202 Sum_probs=130.7
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHH-ccCCeEEEEeCChHH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRD 100 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~ 100 (492)
.+..||.|...+-.++.+.|--+ ++.+. ........... -.+.+....|...|...+... ....++||||+|++.
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~l~--v~~IP-t~kp~~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~ 440 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYNME--VVQIP-TNRPIIRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQ 440 (790)
T ss_pred HHhccCCCChHHHHHHHHHhCCc--EEECC-CCCCcccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 46678999866555665555322 22221 11111111111 122345567888777776543 457899999999999
Q ss_pred HHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCC---CCcC-----EEEecCCCCChhHH
Q 011149 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---PNVD-----LIIHYELPNDPETF 171 (492)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi---~~v~-----~VI~~~~P~~~~~y 171 (492)
++.++..|.+ ++++..||+++.+.++..+.++++.+ .|+||||+++||+|| |+|. |||+|++|.+...|
T Consensus 441 se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y 518 (790)
T PRK09200 441 SETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVD 518 (790)
T ss_pred HHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHH
Confidence 9999999986 89999999999999999888888876 699999999999999 7998 99999999999999
Q ss_pred HHHhhhcccCCCCCeEEEecChhhH
Q 011149 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 172 ~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
+||+|||||.|.+|.+++|++..|.
T Consensus 519 ~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 519 LQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred HHhhccccCCCCCeeEEEEEcchHH
Confidence 9999999999999999999987653
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-18 Score=185.29 Aligned_cols=138 Identities=28% Similarity=0.422 Sum_probs=118.7
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC
Q 011149 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (492)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~ 154 (492)
.++..+......+.++||||+|++.++.|++.|.. ++.+..+|+++++.+|..+++.|+.|++.|||||+++++|+|+|
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp 513 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIP 513 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcccc
Confidence 34444444445577999999999999999999986 78999999999999999999999999999999999999999999
Q ss_pred CcCEEEecCC-----CCChhHHHHHhhhcccCCCCCeEEEecCh---------hhHHHHHHHHHHhCCCceecC
Q 011149 155 NVDLIIHYEL-----PNDPETFVHRSGRTGRAGKEGTAILMFTS---------SQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 155 ~v~~VI~~~~-----P~~~~~y~qr~GR~gR~g~~g~~i~l~~~---------~e~~~~~~l~~~~~~~~~~~~ 214 (492)
++++||++|. |.+..+|+||+|||||. ..|.+++|++. .+...++.++..++.+...++
T Consensus 514 ~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred CCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 9999999884 78999999999999996 78999999984 466677777777776655443
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=182.60 Aligned_cols=128 Identities=25% Similarity=0.432 Sum_probs=112.2
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC
Q 011149 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (492)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~ 154 (492)
.++..+......+.++||||+|++.++.|++.|.+ ++.+..+|+++++.+|.++++.|+.|++.|||||+++++|+|+|
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 34444444445678999999999999999999986 78999999999999999999999999999999999999999999
Q ss_pred CcCEEEecC-----CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 155 NVDLIIHYE-----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 155 ~v~~VI~~~-----~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
++++||++| .|.+..+|+||+|||||. ..|.+++++...+....+.|+.
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999988 799999999999999998 6899999988766555555443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-17 Score=177.82 Aligned_cols=203 Identities=21% Similarity=0.321 Sum_probs=141.0
Q ss_pred HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcc------cHHHHHHHHHH
Q 011149 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT------SKRTILSDLIT 83 (492)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~------~k~~~l~~ll~ 83 (492)
++.+....+ +.|.|.+|||+.+ ...+++..........++..... ...++..+..... ....++..+.+
T Consensus 174 LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~---k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~ 248 (814)
T COG1201 174 LERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAA---KKLEIKVISPVEDLIYDEELWAALYERIAE 248 (814)
T ss_pred HHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccC---CcceEEEEecCCccccccchhHHHHHHHHH
Confidence 445555555 8999999999964 34445433333212222211111 1222222222211 12223344444
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHcc--cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 84 VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~~--~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
...++..+|||+||+..|+.++..|++. ..+..+||.++.++|..+.++|++|+++.+|||..++.|||+.+|++|||
T Consensus 249 ~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq 328 (814)
T COG1201 249 LVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ 328 (814)
T ss_pred HHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE
Confidence 4445579999999999999999999974 68999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhhhccc-CCCCCeEEEecChhhH--HHHHHHHHHhCCCceecCCCC
Q 011149 162 YELPNDPETFVHRSGRTGR-AGKEGTAILMFTSSQR--RTVRSLERDVGCKFEFVSPPV 217 (492)
Q Consensus 162 ~~~P~~~~~y~qr~GR~gR-~g~~g~~i~l~~~~e~--~~~~~l~~~~~~~~~~~~~p~ 217 (492)
|.-|.++..++||+||+|+ .+.....+++....+. .........+.-+++.+.+|.
T Consensus 329 ~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~ 387 (814)
T COG1201 329 LGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPK 387 (814)
T ss_pred eCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCC
Confidence 9999999999999999997 4555677777665321 222233444555666555554
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-18 Score=171.75 Aligned_cols=157 Identities=20% Similarity=0.265 Sum_probs=110.7
Q ss_pred HHHHhCCCCCcEEEEeeeCChHHHHHHHHH--cCCCceEEeecc--cc---------------cccccceEEEEEEcCcc
Q 011149 12 LILENLPPKRQSMLFSATMPSWVKKLSRKY--LDNPLNIDLVGN--QD---------------EKLAEGIKLYAISTTAT 72 (492)
Q Consensus 12 ~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~--~~~~~~i~~~~~--~~---------------~~~~~~i~~~~~~~~~~ 72 (492)
.+++..+...+++++|||+|+++....... +..+.. .+.+. .. ..+...+.+.+.. ...
T Consensus 173 ~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~-~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 250 (357)
T TIGR03158 173 QLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIA-PIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APD 250 (357)
T ss_pred HHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceee-eecCcccccCCChhhhccccccccceeccceEEEEEe-CCc
Confidence 444444456899999999999888777654 333321 11111 00 0011245555544 334
Q ss_pred cHHHHHHHHHHHH------ccCCeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEe
Q 011149 73 SKRTILSDLITVY------AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (492)
Q Consensus 73 ~k~~~l~~ll~~~------~~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa 143 (492)
.+...+..+++.. .++.++||||+|++.++.++..|++ .+.+..+||.+++.+|+++. +..||||
T Consensus 251 ~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~~iLVa 324 (357)
T TIGR03158 251 FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QFDILLG 324 (357)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cCCEEEE
Confidence 4554444433322 2357999999999999999999985 25688899999999987654 6789999
Q ss_pred cccccccCCCCCcCEEEecCCCCChhHHHHHhhhcc
Q 011149 144 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179 (492)
Q Consensus 144 T~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~g 179 (492)
|+++++|||+|.+ +|| ++ |.+.++|+||+||+|
T Consensus 325 Tdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 325 TSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999999999987 566 45 899999999999986
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=201.09 Aligned_cols=187 Identities=18% Similarity=0.243 Sum_probs=141.9
Q ss_pred CChHHHHHH----HHH----------------------hCCCCCc-EEEEeeeCChHHHHHHHHHcCCCceEEeeccccc
Q 011149 4 VGFEEDVEL----ILE----------------------NLPPKRQ-SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE 56 (492)
Q Consensus 4 ~GF~~~l~~----Il~----------------------~~~~~~q-~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~ 56 (492)
|||.+++.. |++ .+|...| +++||||+++.- .+ .++++++..+.+. ...
T Consensus 226 lGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~-~~-~~l~~~~l~f~v~--~~~ 301 (1638)
T PRK14701 226 LGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG-DR-VKLYRELLGFEVG--SGR 301 (1638)
T ss_pred CCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh-HH-HHHhhcCeEEEec--CCC
Confidence 799999975 543 3455666 567999998631 11 2345666666553 223
Q ss_pred ccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHH---HHHHHHHHHc-ccceeeecCCCCHHHHHHHHhh
Q 011149 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD---ADEVSLALTS-IIASEALHGDISQHQRERTLNG 132 (492)
Q Consensus 57 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~---~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~ 132 (492)
....++.+.|+.+....+ ..|..+++.+ ...+||||+|++. |+++++.|.. ++.+..+|++ |..++++
T Consensus 302 ~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~ 373 (1638)
T PRK14701 302 SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDL 373 (1638)
T ss_pred CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHH
Confidence 455678888877655545 4566677654 4689999999876 5899999985 8999999995 8899999
Q ss_pred hcCCCeEEEEec----ccccccCCCCC-cCEEEecCCCC---ChhHHHHHh-------------hhcccCCCCCeEEEec
Q 011149 133 FRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYELPN---DPETFVHRS-------------GRTGRAGKEGTAILMF 191 (492)
Q Consensus 133 F~~g~~~iLVaT----~~~~~Gidi~~-v~~VI~~~~P~---~~~~y~qr~-------------GR~gR~g~~g~~i~l~ 191 (492)
|++|+++||||| ++++||||+|+ |.+|||||+|. +.+.|.|-. ||++|.|....+++.+
T Consensus 374 F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~ 453 (1638)
T PRK14701 374 FEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDV 453 (1638)
T ss_pred HHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHh
Confidence 999999999999 59999999999 99999999999 888776655 9999998887777666
Q ss_pred ChhhHHHHHHH
Q 011149 192 TSSQRRTVRSL 202 (492)
Q Consensus 192 ~~~e~~~~~~l 202 (492)
...+...++.+
T Consensus 454 ~~~~~~~~~~~ 464 (1638)
T PRK14701 454 FPEDVEFLRSI 464 (1638)
T ss_pred HHHHHHHHHHH
Confidence 66655555544
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.5e-18 Score=184.51 Aligned_cols=195 Identities=21% Similarity=0.321 Sum_probs=154.0
Q ss_pred hHHHHHH---HHHhCCCCCcEEEEeeeCChHHHHHHHHHcC--CCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 6 FEEDVEL---ILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 6 F~~~l~~---Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
|+++-.+ +....| ...+|.++||....|..-+-..|+ ++..+. .....+++.+.+...........+..
T Consensus 404 FRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~-----~sfnR~NL~yeV~~k~~~~~~~~~~~ 477 (941)
T KOG0351|consen 404 FRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK-----SSFNRPNLKYEVSPKTDKDALLDILE 477 (941)
T ss_pred ccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec-----ccCCCCCceEEEEeccCccchHHHHH
Confidence 5554443 334444 489999999998888775555554 555332 12234555444333332344444444
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
.+..+.+....||||.++.+|++++..|.. .+.+..+|++|+..+|+.|.++|..++++|+|||=++.+|||.|+|..|
T Consensus 478 ~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~V 557 (941)
T KOG0351|consen 478 ESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFV 557 (941)
T ss_pred HhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEE
Confidence 555556778999999999999999999996 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHh
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (492)
|||.+|.+.+.|.|-+||+||.|....|++|+...+...++.+...-
T Consensus 558 iH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 558 IHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred EECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999887777765544
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-18 Score=171.32 Aligned_cols=121 Identities=33% Similarity=0.565 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc-cccee-ee--------cCCCCHHHHHHHHhhhcCCCeE
Q 011149 73 SKRTILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-IIASE-AL--------HGDISQHQRERTLNGFRQGKFT 139 (492)
Q Consensus 73 ~k~~~l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~-~l--------hg~~~~~~r~~~~~~F~~g~~~ 139 (492)
.|++.+..+++... .+.++|||++.+++|+.|+..|.+ +..+. .+ ..+|+|.++.+++++|++|+++
T Consensus 348 PKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n 427 (542)
T COG1111 348 PKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN 427 (542)
T ss_pred ccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce
Confidence 46777777776542 356999999999999999999986 33332 22 2479999999999999999999
Q ss_pred EEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChh
Q 011149 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (492)
Q Consensus 140 iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 194 (492)
|||||+++++|||||++++||.|++-.|+..++||.|||||. ++|.+++|++..
T Consensus 428 VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 428 VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 999999999999999999999999999999999999999997 899999998875
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=176.46 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEec-cccccc
Q 011149 74 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT-DVAARG 150 (492)
Q Consensus 74 k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT-~~~~~G 150 (492)
+..++..++..+ ..+.++||||++.+.++.|++.|.+ .+.+..+||+|++++|..+++.|++++..||||| +++++|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 444444444333 3457899999999999999999986 7899999999999999999999999999999998 899999
Q ss_pred CCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCC
Q 011149 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG 185 (492)
Q Consensus 151 idi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g 185 (492)
+|+|++++||++.+|.+...|+||+||++|.+...
T Consensus 409 ~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 409 ISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 99999999999999999999999999999987544
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=177.66 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=128.2
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHHHHHHHHHH-HccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~ 99 (492)
++..||.|...+..++.+.|--+ ++.+. .+.+.....+ -.+......|..++...+.. +....++||||+|++
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY~l~--v~~IP---t~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~ 435 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETYSLS--VVKIP---TNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVE 435 (762)
T ss_pred hhcccCCCChhHHHHHHHHhCCC--EEEcC---CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHH
Confidence 46678888766666666555322 22221 1221111111 12334455677776666544 356789999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC---------CcCEEEecCCCCChh
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---------NVDLIIHYELPNDPE 169 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~---------~v~~VI~~~~P~~~~ 169 (492)
.++.++..|.+ ++++..||+++.+.++..+.++++.| .|+||||+++||+||+ .+.+||+|++|....
T Consensus 436 ~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ri 513 (762)
T TIGR03714 436 MSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRV 513 (762)
T ss_pred HHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHH
Confidence 99999999985 89999999999999999888888877 6999999999999999 999999999999877
Q ss_pred HHHHHhhhcccCCCCCeEEEecChhhH
Q 011149 170 TFVHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 170 ~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
. +||+|||||.|.+|.+++|++..|.
T Consensus 514 d-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 514 D-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred H-HHhhhcccCCCCceeEEEEEccchh
Confidence 7 9999999999999999999988653
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=144.40 Aligned_cols=127 Identities=46% Similarity=0.772 Sum_probs=111.8
Q ss_pred EEEEEEcCcccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEE
Q 011149 63 KLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (492)
Q Consensus 63 ~~~~~~~~~~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~i 140 (492)
.+++...+ ..|...+..++.... ...++||||++...++.+++.|.+ ...+..+|+.++..+|..+++.|+++...|
T Consensus 3 ~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 3 KQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred EEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 34444443 267777777776653 467999999999999999999986 678999999999999999999999999999
Q ss_pred EEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEe
Q 011149 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (492)
Q Consensus 141 LVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (492)
||+|.++++|+|+|.+++||.+++|++...|+|++||++|.|..+.++++
T Consensus 82 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 82 LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999999999988887764
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=177.40 Aligned_cols=168 Identities=20% Similarity=0.202 Sum_probs=129.9
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHHHHH-HHHHHHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILS-DLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~-~ll~~~~~~~~~iVF~~t~~ 99 (492)
.+..||.|...+...+.+.|--+.+. +. .+.+...+.+ -.+......|..++. .+...+..+.++||||+|++
T Consensus 342 kl~GmTGTa~te~~E~~~iY~l~vv~--IP---tnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~ 416 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYNLEVVV--VP---TNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVE 416 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhCCCEEE--eC---CCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 45678889877666666666433222 21 1111111111 111223345665554 44455567889999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCC-------cCEEEecCCCCChhHH
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN-------VDLIIHYELPNDPETF 171 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~-------v~~VI~~~~P~~~~~y 171 (492)
.++.++..|.+ ++++..||+. +.+|+..+.+|+.+...|+||||+++||+||+. ..|||++++|.+...|
T Consensus 417 ~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~ 494 (745)
T TIGR00963 417 KSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRID 494 (745)
T ss_pred HHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHH
Confidence 99999999996 8999999998 889999999999999999999999999999998 4599999999999999
Q ss_pred HHHhhhcccCCCCCeEEEecChhhH
Q 011149 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 172 ~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
.|+.|||||.|.+|.+.+|++..|.
T Consensus 495 ~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 495 NQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHhccccCCCCCcceEEEEeccHH
Confidence 9999999999999999999987653
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-17 Score=185.15 Aligned_cols=160 Identities=19% Similarity=0.297 Sum_probs=118.9
Q ss_pred hCCCCCc--EEEEeee-CChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEE
Q 011149 16 NLPPKRQ--SMLFSAT-MPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTI 92 (492)
Q Consensus 16 ~~~~~~q--~ll~SAT-~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~i 92 (492)
.+|+.+| +++|||| +|..+.. .+++++..+++.. ......++.+.++.+.. +...|..+++.+ ..++|
T Consensus 260 ~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~--~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~I 330 (1171)
T TIGR01054 260 AIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGG--GSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGI 330 (1171)
T ss_pred hhhhccCcEEEEEeCCCCccccHH---HHcccccceEecC--ccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEE
Confidence 4566666 5678999 6766543 3456666565532 23345678887775543 345566677665 36899
Q ss_pred EEeCCh---HHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEe----cccccccCCCCC-cCEEEecC
Q 011149 93 VFTQTK---RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARGLDIPN-VDLIIHYE 163 (492)
Q Consensus 93 VF~~t~---~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa----T~~~~~Gidi~~-v~~VI~~~ 163 (492)
|||+|+ +.|++|++.|.+ ++.+..+||+|++ +++++|++|+++|||| ||+++||||+|+ |++|||||
T Consensus 331 VFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~ 406 (1171)
T TIGR01054 331 VYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLG 406 (1171)
T ss_pred EEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEEC
Confidence 999999 999999999986 7999999999973 6899999999999999 599999999999 89999999
Q ss_pred CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHH
Q 011149 164 LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (492)
Q Consensus 164 ~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (492)
+|.. +.+.++..+++.....+..++
T Consensus 407 ~P~~---------------~~~~~~~~~~~~~~~~~~~~~ 431 (1171)
T TIGR01054 407 VPKF---------------KVPLKEALSSPRRLLLLLSIL 431 (1171)
T ss_pred CCCE---------------EEecccccccHHHHHHHHHhh
Confidence 9976 223455556665555555444
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=161.55 Aligned_cols=174 Identities=24% Similarity=0.345 Sum_probs=135.2
Q ss_pred HHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHc-------
Q 011149 14 LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA------- 86 (492)
Q Consensus 14 l~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~------- 86 (492)
|+++-+..|+|.+|||+.++ ..+++++--+.+..+ ..+.+--.|..+.....+|..++..|.+...
T Consensus 366 Lr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~------~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg 438 (830)
T COG1202 366 LRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD------ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKG 438 (830)
T ss_pred HHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec------CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccC
Confidence 44555689999999999654 456665543333221 2222222345555557789999988876531
Q ss_pred cCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe---c
Q 011149 87 KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH---Y 162 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~---~ 162 (492)
-.+++|||++++..|..|+..|. +++++.++|++|++.+|..+...|.++++.++|+|-+++.|+|+|.-.+|+. .
T Consensus 439 ~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaM 518 (830)
T COG1202 439 YRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAM 518 (830)
T ss_pred cCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHc
Confidence 13689999999999999999998 4899999999999999999999999999999999999999999997665441 2
Q ss_pred CCC-CChhHHHHHhhhcccCC--CCCeEEEecChh
Q 011149 163 ELP-NDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (492)
Q Consensus 163 ~~P-~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~ 194 (492)
+.- -++..|.||+||+||.+ ..|++|+++.+-
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 232 48999999999999987 569999998764
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.7e-17 Score=173.40 Aligned_cols=167 Identities=22% Similarity=0.233 Sum_probs=128.2
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHHHHHHHHH-HHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLIT-VYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~-~~~~~~~~iVF~~t~~ 99 (492)
++..||.|...+...+.+.|--+ ++.+. .+++.....+ -.+......|...+...+. .+....++||||+|++
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~l~--vv~IP---tnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~ 451 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYNME--VITIP---TNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIE 451 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC--EEEcC---CCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHH
Confidence 45668888876666665555333 22221 1221111111 1122334567766666654 3456789999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCC---CCcC-----EEEecCCCCChhH
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---PNVD-----LIIHYELPNDPET 170 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi---~~v~-----~VI~~~~P~~~~~ 170 (492)
.++.|+..|.+ ++++..||+++.+.+++.+.++++.|. |+|||++|+||+|| ++|. |||++++|.+...
T Consensus 452 ~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri 529 (796)
T PRK12906 452 SSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRI 529 (796)
T ss_pred HHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHH
Confidence 99999999985 799999999999888888888888776 99999999999999 4899 9999999999999
Q ss_pred HHHHhhhcccCCCCCeEEEecChhh
Q 011149 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 171 y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
|.|+.|||||.|.+|.+.++++..|
T Consensus 530 ~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 530 DNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HHHHhhhhccCCCCcceEEEEeccc
Confidence 9999999999999999999998765
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=172.70 Aligned_cols=234 Identities=19% Similarity=0.312 Sum_probs=171.3
Q ss_pred HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcC-ccc-HHHHHHHHHHHH--
Q 011149 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATS-KRTILSDLITVY-- 85 (492)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~-k~~~l~~ll~~~-- 85 (492)
+..++...+++.++|+||||+..+ ++ .+|+.+...+.+.+.. -.|+.+|.... ... -.+.+...+..+
T Consensus 185 lk~~~~~rr~DLKiIimSATld~~--rf-s~~f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~ 256 (845)
T COG1643 185 LKDLLARRRDDLKLIIMSATLDAE--RF-SAYFGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLR 256 (845)
T ss_pred HHHHHhhcCCCceEEEEecccCHH--HH-HHHcCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhcc
Confidence 445677778789999999999643 44 4577777777765322 22444553333 223 344455555444
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEE
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI 160 (492)
...+.+|||.+..++.+.+++.|.+ .+.+..|||.|+.+++.++++.-..+..+|++||++++.+|.||+|.+||
T Consensus 257 ~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VI 336 (845)
T COG1643 257 EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVI 336 (845)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEe
Confidence 2357899999999999999999985 25688999999999999999998888888999999999999999999999
Q ss_pred ecC------------------CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHH
Q 011149 161 HYE------------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222 (492)
Q Consensus 161 ~~~------------------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~ 222 (492)
+-+ .|.+.++..||.||+||.+ +|.||-+|+..+.. . .+.-+..||+
T Consensus 337 DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~---~-----------~~~~t~PEIl 401 (845)
T COG1643 337 DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL---A-----------FPEFTLPEIL 401 (845)
T ss_pred cCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH---h-----------cccCCChhhh
Confidence 544 2568899999999999985 89999999986542 1 1222346777
Q ss_pred HHHHHHHHHHhccCCcc-chhhhHHHHHHHHhhhCHHHHHHHHHHHcCCC
Q 011149 223 ESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (492)
Q Consensus 223 ~~~~~~~~~~l~~~~~~-~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~ 271 (492)
...+..++..+.+.... +...| .+++.++...+.+|+..|..+.
T Consensus 402 rtdLs~~vL~l~~~G~~~d~~~f-----~fld~P~~~~i~~A~~~L~~LG 446 (845)
T COG1643 402 RTDLSGLVLQLKSLGIGQDIAPF-----PFLDPPPEAAIQAALTLLQELG 446 (845)
T ss_pred hcchHHHHHHHHhcCCCCCcccC-----ccCCCCChHHHHHHHHHHHHcC
Confidence 77788888888776552 44443 4566677777777776665433
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-17 Score=127.74 Aligned_cols=76 Identities=39% Similarity=0.768 Sum_probs=72.2
Q ss_pred HHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCC
Q 011149 107 ALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 182 (492)
Q Consensus 107 ~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g 182 (492)
.|+. .+.+..+||++++.+|+.+++.|+++...|||||+++++|||+|++++||++++|+++..|+|++||++|.|
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3553 789999999999999999999999999999999999999999999999999999999999999999999976
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-16 Score=161.05 Aligned_cols=225 Identities=19% Similarity=0.321 Sum_probs=167.8
Q ss_pred CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHH-HHHHHHHHHH--ccCCeEEEEe
Q 011149 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-TILSDLITVY--AKGGKTIVFT 95 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~l~~ll~~~--~~~~~~iVF~ 95 (492)
++.++|++|||+..+ ....|+.+...+.+.+.. ..|+.+|...+..+-. +.+..+++.+ .+++-+|||.
T Consensus 194 ~~LklIimSATlda~---kfS~yF~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFL 265 (674)
T KOG0922|consen 194 PDLKLIIMSATLDAE---KFSEYFNNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFL 265 (674)
T ss_pred CCceEEEEeeeecHH---HHHHHhcCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEe
Confidence 467999999999533 445677776667664322 3355566665554443 3344444444 3567899999
Q ss_pred CChHHHHHHHHHHHcc---c------ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecC---
Q 011149 96 QTKRDADEVSLALTSI---I------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE--- 163 (492)
Q Consensus 96 ~t~~~~~~l~~~l~~~---~------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~--- 163 (492)
+..++++.+++.|.+. . .+..+||.|+.+++.++++.-..|..+|++||++++..|.||.|.+||+.+
T Consensus 266 tGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK 345 (674)
T KOG0922|consen 266 TGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVK 345 (674)
T ss_pred CCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceE
Confidence 9999999999999853 1 146799999999999999999999999999999999999999999999543
Q ss_pred ---------------CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHH
Q 011149 164 ---------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228 (492)
Q Consensus 164 ---------------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~ 228 (492)
.|.|.++-.||+||+||.+ +|.|+-+|+..+.. . ++..+..|+....+..
T Consensus 346 ~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~---~-----------~~~~~~PEI~R~~Ls~ 410 (674)
T KOG0922|consen 346 QKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD---K-----------MPLQTVPEIQRVNLSS 410 (674)
T ss_pred EEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh---h-----------cccCCCCceeeechHH
Confidence 3668899999999999986 89999999987742 1 1223344556666667
Q ss_pred HHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCC
Q 011149 229 VVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (492)
Q Consensus 229 ~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~ 271 (492)
++..|++....++..| ++++.+.++.+.+||..|.-+.
T Consensus 411 ~vL~Lkalgi~d~l~F-----~f~d~P~~~~l~~AL~~L~~lg 448 (674)
T KOG0922|consen 411 AVLQLKALGINDPLRF-----PFIDPPPPEALEEALEELYSLG 448 (674)
T ss_pred HHHHHHhcCCCCcccC-----CCCCCCChHHHHHHHHHHHhcC
Confidence 7777777666665555 5677788888888888886433
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.9e-17 Score=156.44 Aligned_cols=179 Identities=23% Similarity=0.361 Sum_probs=138.7
Q ss_pred CCCcEEEEeeeCChHHHHHHH--HHcCCCceEEeecccccccccceEEEEEEc---CcccHHHHHHHHHH-HHcc-----
Q 011149 19 PKRQSMLFSATMPSWVKKLSR--KYLDNPLNIDLVGNQDEKLAEGIKLYAIST---TATSKRTILSDLIT-VYAK----- 87 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~i~~~~~--~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~---~~~~k~~~l~~ll~-~~~~----- 87 (492)
.+...|.++||....|++-+- ..|++|+.|--.+ ....++ +|-.. ..++-+..|.++.. .+.+
T Consensus 175 ~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP----~FR~NL--FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~ 248 (641)
T KOG0352|consen 175 PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP----TFRDNL--FYDNHMKSFITDCLTVLADFSSSNLGKHEKAS 248 (641)
T ss_pred CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc----chhhhh--hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhh
Confidence 478899999999988877543 3345676542211 111111 11110 01223334444321 2210
Q ss_pred ------CCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEE
Q 011149 88 ------GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (492)
Q Consensus 88 ------~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI 160 (492)
.+-.||||.|+++|++++-.|.. ++.+.++|.+|...+|.++-+++.++++.|++||....+|+|-|+|.+||
T Consensus 249 ~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFVi 328 (641)
T KOG0352|consen 249 QNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVI 328 (641)
T ss_pred cCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEE
Confidence 23579999999999999999985 89999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHH
Q 011149 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (492)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (492)
|+++|.+...|.|-.||+||.|+...|-++|+..+...+..|.
T Consensus 329 HW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 329 HWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred ecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 9999999999999999999999999999999999987777664
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.6e-16 Score=164.93 Aligned_cols=118 Identities=24% Similarity=0.342 Sum_probs=100.6
Q ss_pred cHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCC-CeEEEEeccccccc
Q 011149 73 SKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDVAARG 150 (492)
Q Consensus 73 ~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~iLVaT~~~~~G 150 (492)
.|..++..++..+. .+.++||||.+...++.++..|. +..+||++++.+|.+++++|+++ .+++||+|+++.+|
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeG 555 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTS 555 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccc
Confidence 45566666776553 56799999999999998888773 56799999999999999999875 78999999999999
Q ss_pred CCCCCcCEEEecCCC-CChhHHHHHhhhcccCCCCCeE-------EEecChh
Q 011149 151 LDIPNVDLIIHYELP-NDPETFVHRSGRTGRAGKEGTA-------ILMFTSS 194 (492)
Q Consensus 151 idi~~v~~VI~~~~P-~~~~~y~qr~GR~gR~g~~g~~-------i~l~~~~ 194 (492)
||+|++++||+++.| .+...|+||+||++|.+..+.+ |.|+++.
T Consensus 556 IDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 556 IDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred cCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 999999999999998 4999999999999998866554 7777764
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=167.30 Aligned_cols=107 Identities=25% Similarity=0.449 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc----cceeeecCCCCHHHH----HHHHhhh-cCCC---eEEE
Q 011149 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQR----ERTLNGF-RQGK---FTVL 141 (492)
Q Consensus 74 k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~----~~~~~lhg~~~~~~r----~~~~~~F-~~g~---~~iL 141 (492)
...++..+++....+.++||||||++.|+++++.|++. +.+..+|+.+++.+| +++++.| ++++ ..||
T Consensus 546 ~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~IL 625 (878)
T PRK09694 546 DLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRIL 625 (878)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEE
Confidence 34566667766666789999999999999999999863 468999999999999 4677888 6665 4799
Q ss_pred EecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCC
Q 011149 142 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (492)
Q Consensus 142 VaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~ 183 (492)
|||+++++|||| ++++||....| .+.|+||+||++|.++
T Consensus 626 VaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 626 VATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999999999 58999998887 6799999999999874
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-16 Score=168.31 Aligned_cols=168 Identities=21% Similarity=0.232 Sum_probs=127.1
Q ss_pred EEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHH-ccCCeEEEEeCChHHH
Q 011149 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRDA 101 (492)
Q Consensus 23 ~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~ 101 (492)
+-.||.|...+-.++.+-|--+.+. +. ........+..- .+......|..+|...+... ..+.++||||+|++.+
T Consensus 536 LaGMTGTA~te~~Ef~~iY~L~Vv~--IP-TnrP~~R~D~~d-~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~s 611 (1025)
T PRK12900 536 LAGMTGTAETEASEFFEIYKLDVVV--IP-TNKPIVRKDMDD-LVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVS 611 (1025)
T ss_pred hcccCCCChhHHHHHHHHhCCcEEE--CC-CCCCcceecCCC-eEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHH
Confidence 4457777766666665555332222 21 111111111111 22234456777777766543 4578999999999999
Q ss_pred HHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC---CcC-----EEEecCCCCChhHHH
Q 011149 102 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETFV 172 (492)
Q Consensus 102 ~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~---~v~-----~VI~~~~P~~~~~y~ 172 (492)
+.|+..|.. ++++.+||+ .+.+|+..+.+|+.+...|+||||+|+||+||+ .|. +||+++.|.+...|.
T Consensus 612 E~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~ 689 (1025)
T PRK12900 612 ETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDR 689 (1025)
T ss_pred HHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHH
Confidence 999999985 899999997 589999999999999999999999999999999 554 459999999999999
Q ss_pred HHhhhcccCCCCCeEEEecChhhH
Q 011149 173 HRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 173 qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
|++|||||.|.+|.+++|++..|.
T Consensus 690 Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 690 QLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred HHhhhhhcCCCCcceEEEechhHH
Confidence 999999999999999999998663
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=171.08 Aligned_cols=121 Identities=36% Similarity=0.562 Sum_probs=107.8
Q ss_pred ccHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCC--------CCHHHHHHHHhhhcCCCeE
Q 011149 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGD--------ISQHQRERTLNGFRQGKFT 139 (492)
Q Consensus 72 ~~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~--------~~~~~r~~~~~~F~~g~~~ 139 (492)
..|+..|.++|... ..+.++||||++++.|+.|++.|.. .+.+..+||. |++.+|.+++++|++++++
T Consensus 346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~ 425 (773)
T PRK13766 346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN 425 (773)
T ss_pred ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCC
Confidence 35777788887664 3567999999999999999999974 7788888876 9999999999999999999
Q ss_pred EEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecCh
Q 011149 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (492)
Q Consensus 140 iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (492)
|||||+++++|+|+|++++||+||+|+++..|+||+||+||.+ ++.+++|+..
T Consensus 426 vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~ 478 (773)
T PRK13766 426 VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAK 478 (773)
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeC
Confidence 9999999999999999999999999999999999999999986 4777877764
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=155.83 Aligned_cols=243 Identities=18% Similarity=0.291 Sum_probs=177.8
Q ss_pred CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHH-HHHHHHHH--ccCCeEEEE
Q 011149 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVY--AKGGKTIVF 94 (492)
Q Consensus 18 ~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~--~~~~~~iVF 94 (492)
.++..+|+.||||..+ + ...|+.+...+.+.+. . -.+..+|-..+..+.+++ +..+++.+ .+.+-+|||
T Consensus 408 RpdLKllIsSAT~DAe--k-FS~fFDdapIF~iPGR---R--yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVF 479 (902)
T KOG0923|consen 408 RPDLKLLISSATMDAE--K-FSAFFDDAPIFRIPGR---R--YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVF 479 (902)
T ss_pred CCcceEEeeccccCHH--H-HHHhccCCcEEeccCc---c--cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEE
Confidence 4688999999999543 3 3457777666655432 2 234456666666665544 34444433 345789999
Q ss_pred eCChHHHHHHHHHHHcc----------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecC-
Q 011149 95 TQTKRDADEVSLALTSI----------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE- 163 (492)
Q Consensus 95 ~~t~~~~~~l~~~l~~~----------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~- 163 (492)
..-.++.+...+.|... +-+.++|+.||.+.+.++++.--.|..+|++||++|+..|.|++|.+||+-+
T Consensus 480 ltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf 559 (902)
T KOG0923|consen 480 LTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGF 559 (902)
T ss_pred eccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcc
Confidence 99999888877777532 4588999999999999999999999999999999999999999999999433
Q ss_pred -----------------CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHH
Q 011149 164 -----------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226 (492)
Q Consensus 164 -----------------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~ 226 (492)
.|.+.++-.||+||+||.| +|.|+-||+...+ .+.||. .. ..++....+
T Consensus 560 ~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY--~~eLE~--------~t---~PEIqRtnL 625 (902)
T KOG0923|consen 560 VKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY--EHELEE--------MT---VPEIQRTNL 625 (902)
T ss_pred ccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh--hhhhcc--------CC---Ccceeeccc
Confidence 3668889999999999997 8999999997442 333332 22 234555666
Q ss_pred HHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeE
Q 011149 227 EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWV 287 (492)
Q Consensus 227 ~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~ 287 (492)
..++..|.++...++..| ++++.+..+.|..+|..|..+.+....-.|+.....|.
T Consensus 626 ~nvVL~LkSLGI~Dl~~F-----dFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMa 681 (902)
T KOG0923|consen 626 GNVVLLLKSLGIHDLIHF-----DFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRMA 681 (902)
T ss_pred hhHHHHHHhcCcchhccc-----ccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhhh
Confidence 777788888877777777 67888888999999999876665554444443333333
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=159.55 Aligned_cols=123 Identities=33% Similarity=0.535 Sum_probs=103.9
Q ss_pred ccHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc----ccceeeec--------CCCCHHHHHHHHhhhcCC
Q 011149 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALH--------GDISQHQRERTLNGFRQG 136 (492)
Q Consensus 72 ~~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lh--------g~~~~~~r~~~~~~F~~g 136 (492)
..|++.+..++..+ .+..++||||+||+.|+.|...|.. .++...+- -+|+|.++.+++++|++|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 46777777766544 3457999999999999999999873 23333332 379999999999999999
Q ss_pred CeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhH
Q 011149 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 137 ~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
+++|||||+++++||||++|++||-||.-.++...+||.|| ||+ +.|.++++++..+.
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEV 531 (746)
T ss_pred CccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhH
Confidence 99999999999999999999999999999999999999999 998 57889988885443
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.9e-15 Score=161.00 Aligned_cols=173 Identities=23% Similarity=0.369 Sum_probs=123.3
Q ss_pred CCCCcEEEEeeeCChHHHHHHHHHcC-CCceEEeecccccccccceEEEEEEc------CcccHHHHHHHHHHHHccCCe
Q 011149 18 PPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAIST------TATSKRTILSDLITVYAKGGK 90 (492)
Q Consensus 18 ~~~~q~ll~SAT~p~~i~~~~~~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~~------~~~~k~~~l~~ll~~~~~~~~ 90 (492)
....|++.+|||+|+ ..+++. |++ ++........+..........++... +.......+..++..+..+++
T Consensus 178 ~~~~rivgLSATlpN-~~evA~-wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~q 255 (766)
T COG1204 178 NELIRIVGLSATLPN-AEEVAD-WLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQ 255 (766)
T ss_pred CcceEEEEEeeecCC-HHHHHH-HhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCe
Confidence 345899999999987 455665 444 33311111111111111111122111 111234556666777778899
Q ss_pred EEEEeCChHHHHHHHHHHHcc--------------------------------------cceeeecCCCCHHHHHHHHhh
Q 011149 91 TIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRERTLNG 132 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~~--------------------------------------~~~~~lhg~~~~~~r~~~~~~ 132 (492)
+||||++++.+...+..|.+. ..+..+|.+|+.++|..+.+.
T Consensus 256 vLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~ 335 (766)
T COG1204 256 VLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDA 335 (766)
T ss_pred EEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHH
Confidence 999999999999999888731 135678999999999999999
Q ss_pred hcCCCeEEEEecccccccCCCCCcCEEE----ecC-----CCCChhHHHHHhhhcccCC--CCCeEEEecC
Q 011149 133 FRQGKFTVLVATDVAARGLDIPNVDLII----HYE-----LPNDPETFVHRSGRTGRAG--KEGTAILMFT 192 (492)
Q Consensus 133 F~~g~~~iLVaT~~~~~Gidi~~v~~VI----~~~-----~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~ 192 (492)
|+.|.++|||||+.++.|+|+|.-.+|| -|+ .+.++-+|+|++|||||.| ..|.++++.+
T Consensus 336 Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~ 406 (766)
T COG1204 336 FRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILAT 406 (766)
T ss_pred HhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEec
Confidence 9999999999999999999999877777 466 5678899999999999988 4567777763
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-14 Score=146.62 Aligned_cols=177 Identities=18% Similarity=0.293 Sum_probs=131.8
Q ss_pred HHHhCCC-CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeE
Q 011149 13 ILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKT 91 (492)
Q Consensus 13 Il~~~~~-~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~ 91 (492)
.|..-.. .+-+++||||.=+....+. .+.|-. +.+.. ....-...|.. ...+.+.+.+++..+.....++.++
T Consensus 403 ~L~~KG~~~Ph~LvMTATPIPRTLAlt--~fgDld-vS~Id-ElP~GRkpI~T--~~i~~~~~~~v~e~i~~ei~~GrQa 476 (677)
T COG1200 403 ALREKGEQNPHVLVMTATPIPRTLALT--AFGDLD-VSIID-ELPPGRKPITT--VVIPHERRPEVYERIREEIAKGRQA 476 (677)
T ss_pred HHHHhCCCCCcEEEEeCCCchHHHHHH--Hhcccc-chhhc-cCCCCCCceEE--EEeccccHHHHHHHHHHHHHcCCEE
Confidence 3444444 5789999999744433333 333322 22211 11111123333 3345567788888888888888999
Q ss_pred EEEeCChH--------HHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEE
Q 011149 92 IVFTQTKR--------DADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (492)
Q Consensus 92 iVF~~t~~--------~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI 160 (492)
.|.||-.+ .|+++++.|+. .+.+..+||.|+.+++++++++|++|+++|||||.|++.|||+|+.+++|
T Consensus 477 Y~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV 556 (677)
T COG1200 477 YVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV 556 (677)
T ss_pred EEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE
Confidence 99998654 45667777774 35688999999999999999999999999999999999999999999999
Q ss_pred ecCCC-CChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 161 HYELP-NDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 161 ~~~~P-~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
.++.- .-.+++.|-.||+||......|++++.+..
T Consensus 557 Ie~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 557 IENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 87754 356788999999999999999999998876
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.6e-14 Score=148.79 Aligned_cols=95 Identities=26% Similarity=0.455 Sum_probs=78.8
Q ss_pred HHHHHHHHHcc---cceeeecCCCCHHHH--HHHHhhhcCCCeEEEEecccccccCCCCCcCEEE--ecCC----CC---
Q 011149 101 ADEVSLALTSI---IASEALHGDISQHQR--ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYEL----PN--- 166 (492)
Q Consensus 101 ~~~l~~~l~~~---~~~~~lhg~~~~~~r--~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI--~~~~----P~--- 166 (492)
++.+.+.|.+. .++..+|+++++.++ ++++++|++|+.+|||+|+++++|+|+|+|++|+ ++|. |.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 57788888763 568899999987766 8999999999999999999999999999999885 6664 32
Q ss_pred ---ChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 167 ---DPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 167 ---~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
....|+|++||+||.++.|.+++.....+
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 24678999999999999999887654333
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-13 Score=137.09 Aligned_cols=165 Identities=25% Similarity=0.356 Sum_probs=130.7
Q ss_pred CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChH
Q 011149 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 20 ~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~ 99 (492)
..|+|.+|||..++-.+... -..++-+-.+...+-+.++ +.....+-.+++..+-.....+.++||-+=|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~-----~~vveQiIRPTGLlDP~ie---vRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG-----GNVVEQIIRPTGLLDPEIE---VRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhcc-----CceeEEeecCCCCCCCcee---eecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 46999999999877544331 1223222222222333232 333344566777777776777899999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecC-----CCCChhHHHH
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-----LPNDPETFVH 173 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~-----~P~~~~~y~q 173 (492)
.|+.|.++|.+ ++++..+|+++..-+|.+++..+|.|.++|||.-+.+-+|||+|.|.+|..+| +..|..+++|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 99999999996 89999999999999999999999999999999999999999999999999877 4578999999
Q ss_pred HhhhcccCCCCCeEEEecCh
Q 011149 174 RSGRTGRAGKEGTAILMFTS 193 (492)
Q Consensus 174 r~GR~gR~g~~g~~i~l~~~ 193 (492)
-+||++|. -.|.+|++...
T Consensus 538 tIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 538 TIGRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHHHhhc-cCCeEEEEchh
Confidence 99999995 47888888654
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-14 Score=134.96 Aligned_cols=188 Identities=22% Similarity=0.323 Sum_probs=145.3
Q ss_pred hHHHHH--HHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011149 6 FEEDVE--LILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (492)
Q Consensus 6 F~~~l~--~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 83 (492)
|+.|-. .||+.--++..+|.++||..+.|..-++..+.-...+++.. .-..+++.+.+.. .+....+.+.++.+
T Consensus 234 fr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a---~fnr~nl~yev~q-kp~n~dd~~edi~k 309 (695)
T KOG0353|consen 234 FRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA---GFNRPNLKYEVRQ-KPGNEDDCIEDIAK 309 (695)
T ss_pred cCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec---ccCCCCceeEeee-CCCChHHHHHHHHH
Confidence 444433 35555556899999999998888877776665322222221 1123444433333 33344444455544
Q ss_pred HH---ccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 84 VY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 84 ~~---~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
.+ ..+...||||-++++++.++..|+. ++.+..+|..|.+.++.-+-+.+..|+++|+|||-+...|||-|+|.+|
T Consensus 310 ~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfv 389 (695)
T KOG0353|consen 310 LIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFV 389 (695)
T ss_pred HhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEE
Confidence 44 3456789999999999999999996 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHH-------------------------------------------HhhhcccCCCCCeEEEecChhhH
Q 011149 160 IHYELPNDPETFVH-------------------------------------------RSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 160 I~~~~P~~~~~y~q-------------------------------------------r~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
|+..+|.+.+.|.| ..||+||.+.+..||++|.-.+.
T Consensus 390 ihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 390 IHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred EecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 99999999999999 78999999999999999876554
Q ss_pred H
Q 011149 197 R 197 (492)
Q Consensus 197 ~ 197 (492)
.
T Consensus 470 f 470 (695)
T KOG0353|consen 470 F 470 (695)
T ss_pred H
Confidence 3
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=149.42 Aligned_cols=102 Identities=23% Similarity=0.368 Sum_probs=82.6
Q ss_pred HHHHHHHHHHc---ccceeeecCCCCH--HHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEE--ecCCCCCh----
Q 011149 100 DADEVSLALTS---IIASEALHGDISQ--HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYELPNDP---- 168 (492)
Q Consensus 100 ~~~~l~~~l~~---~~~~~~lhg~~~~--~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI--~~~~P~~~---- 168 (492)
.++.+++.|.+ ...+..+|+++.+ .++++++++|++|+.+|||+|+++++|+|+|+|++|+ ++|.+.+.
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 46677888876 3578899999874 5789999999999999999999999999999999985 55554332
Q ss_pred ------hHHHHHhhhcccCCCCCeEEEecChhhHHHHHH
Q 011149 169 ------ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 201 (492)
Q Consensus 169 ------~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~ 201 (492)
..|+|++||+||.++.|.+++.....+...++.
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~ 556 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQA 556 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHH
Confidence 578999999999999999998766554444433
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-13 Score=127.89 Aligned_cols=175 Identities=19% Similarity=0.291 Sum_probs=121.8
Q ss_pred CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHH------HHHHHHHH-HccCCe
Q 011149 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT------ILSDLITV-YAKGGK 90 (492)
Q Consensus 18 ~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~------~l~~ll~~-~~~~~~ 90 (492)
.++.-+|.+|||.|+.+++-+.+- +-..+.+. .+.+..+..+..+...-++..++. .|...|+. ...+.+
T Consensus 231 k~~g~~IylTATp~k~l~r~~~~g--~~~~~klp-~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 231 KKEGATIYLTATPTKKLERKILKG--NLRILKLP-ARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred cccCceEEEecCChHHHHHHhhhC--CeeEeecc-hhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCc
Confidence 456789999999998766544321 22223322 223333333444444444444331 33444433 345679
Q ss_pred EEEEeCChHHHHHHHHHHHcc---cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe-cCC-C
Q 011149 91 TIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-YEL-P 165 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~-~~~-P 165 (492)
++||+++.+..++++..|+.. ..+..+|+. ...|.+.+++||+|+++|||+|.+++||+.+|+|+++|. ..- -
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v 385 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV 385 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc
Confidence 999999999999999999754 345778886 567889999999999999999999999999999998664 332 2
Q ss_pred CChhHHHHHhhhcccCC--CCCeEEEecChhhHH
Q 011149 166 NDPETFVHRSGRTGRAG--KEGTAILMFTSSQRR 197 (492)
Q Consensus 166 ~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~ 197 (492)
.+.+.++|.+||+||.- .+|.++.|-......
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 57889999999999954 567877775544433
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-14 Score=144.49 Aligned_cols=225 Identities=19% Similarity=0.305 Sum_probs=161.0
Q ss_pred CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHH-HHHHHHHHH--ccCCeEEEEe
Q 011149 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--AKGGKTIVFT 95 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~--~~~~~~iVF~ 95 (492)
.+.++|.+||||. .++++. |+.+...+.+.+.. -.++..|...+-++..+ ++.+.+..+ ...+.+|||.
T Consensus 499 rdlKliVtSATm~--a~kf~n-fFgn~p~f~IpGRT-----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfm 570 (1042)
T KOG0924|consen 499 RDLKLIVTSATMD--AQKFSN-FFGNCPQFTIPGRT-----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFM 570 (1042)
T ss_pred ccceEEEeecccc--HHHHHH-HhCCCceeeecCCc-----cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEec
Confidence 4789999999994 455554 55555555553321 22444555555555443 334444333 2346899999
Q ss_pred CChHHHHHHHHHHHc-----------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecC-
Q 011149 96 QTKRDADEVSLALTS-----------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE- 163 (492)
Q Consensus 96 ~t~~~~~~l~~~l~~-----------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~- 163 (492)
+..+.++..+..+.. .+.+..+++.||+.-+.++++.-..+..+++|||++|+..|.||++.+||..+
T Consensus 571 tGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy 650 (1042)
T KOG0924|consen 571 TGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGY 650 (1042)
T ss_pred CCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCc
Confidence 988877766655542 25688999999999999999999999999999999999999999999999544
Q ss_pred -----------------CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHH
Q 011149 164 -----------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226 (492)
Q Consensus 164 -----------------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~ 226 (492)
.|.+.+.-.||+||+||.+ +|.||-+|+.... .+ .+...+..|++...+
T Consensus 651 ~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ay--~~-----------eml~stvPEIqRTNl 716 (1042)
T KOG0924|consen 651 CKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDAY--KN-----------EMLPSTVPEIQRTNL 716 (1042)
T ss_pred eeeeecccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhHH--Hh-----------hcccCCCchhhhcch
Confidence 3678888899999999986 8999999987432 11 112234456777777
Q ss_pred HHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCC
Q 011149 227 EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF 270 (492)
Q Consensus 227 ~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~ 270 (492)
..++..|.++..+++..| ++++.+..+.+..++..|.-+
T Consensus 717 ~nvVLlLkslgV~dll~F-----dFmD~Pped~~~~sly~Lw~L 755 (1042)
T KOG0924|consen 717 SNVVLLLKSLGVDDLLKF-----DFMDPPPEDNLLNSLYQLWTL 755 (1042)
T ss_pred hhHHHHHHhcChhhhhCC-----CcCCCCHHHHHHHHHHHHHHh
Confidence 778888887776665555 456666677788888777533
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-14 Score=112.80 Aligned_cols=80 Identities=53% Similarity=0.867 Sum_probs=74.2
Q ss_pred HHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccC
Q 011149 103 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (492)
Q Consensus 103 ~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~ 181 (492)
.+++.|.. .+.+..+||++++++|..+++.|+++...|||+|+++++|+|+|++++||.+++|++...|+|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 45566664 68899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 011149 182 G 182 (492)
Q Consensus 182 g 182 (492)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.5e-13 Score=144.27 Aligned_cols=245 Identities=19% Similarity=0.258 Sum_probs=164.9
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeeccccccc--------------ccceEEEE---
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL--------------AEGIKLYA--- 66 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~--------------~~~i~~~~--- 66 (492)
..|.--+.+.+-...++.++||||||+.. ++.+.|+....++++.+...... .....++.
T Consensus 303 ~DflLi~lk~lL~~~p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~ 379 (924)
T KOG0920|consen 303 TDFLLILLKDLLPRNPDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPE 379 (924)
T ss_pred cccHHHHHHHHhhhCCCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccc
Confidence 33443333333334478999999999973 35556777766665543221100 00001110
Q ss_pred --------E-EcCcccHHHHHHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc--------ccceeeecCCCCHHHH
Q 011149 67 --------I-STTATSKRTILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQR 126 (492)
Q Consensus 67 --------~-~~~~~~k~~~l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~--------~~~~~~lhg~~~~~~r 126 (492)
+ ....+...+++..++..+. ..+.+|||.+...++..+.+.|.. .+-+..+|+.|+..++
T Consensus 380 ~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ 459 (924)
T KOG0920|consen 380 RSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQ 459 (924)
T ss_pred cCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHH
Confidence 0 0011234566666666553 356899999999999999999963 1457889999999999
Q ss_pred HHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe--------cCCCC----------ChhHHHHHhhhcccCCCCCeEE
Q 011149 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH--------YELPN----------DPETFVHRSGRTGRAGKEGTAI 188 (492)
Q Consensus 127 ~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~--------~~~P~----------~~~~y~qr~GR~gR~g~~g~~i 188 (492)
+.+++.--.|..+||+||++++..|.|++|-+||+ ||+-. +...-.||.||+||. .+|.||
T Consensus 460 ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy 538 (924)
T KOG0920|consen 460 QAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICY 538 (924)
T ss_pred HHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeE
Confidence 99999999999999999999999999999999994 44432 445569999999998 689999
Q ss_pred EecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc
Q 011149 189 LMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268 (492)
Q Consensus 189 ~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~ 268 (492)
.+|+......+. ..-...|++...++++...++-+...... +...++++.+.++++..|+..+.
T Consensus 539 ~L~~~~~~~~~~-------------~~~q~PEilR~pL~~l~L~iK~l~~~~~~---~fLskaldpP~~~~v~~a~~~L~ 602 (924)
T KOG0920|consen 539 HLYTRSRYEKLM-------------LAYQLPEILRTPLEELCLHIKVLEQGSIK---AFLSKALDPPPADAVDLAIERLK 602 (924)
T ss_pred Eeechhhhhhcc-------------cccCChHHHhChHHHhhheeeeccCCCHH---HHHHHhcCCCChHHHHHHHHHHH
Confidence 999875542211 00123466666666666666655444444 33456677777787777777664
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-13 Score=148.48 Aligned_cols=194 Identities=20% Similarity=0.336 Sum_probs=141.4
Q ss_pred HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcC---------cccHHHHHHH
Q 011149 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT---------ATSKRTILSD 80 (492)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~---------~~~k~~~l~~ 80 (492)
|..++...+.+.|+|+.|||+.+. .++++.+......+.+. ....+....++....+ ..++...+..
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~---~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~ 297 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVD---EDGSPRGLRYFVRREPPIRELAESIRRSALAELAT 297 (851)
T ss_pred HHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeecc---CCCCCCCceEEEEeCCcchhhhhhcccchHHHHHH
Confidence 444555556789999999999665 44556666654444332 2223333444444444 1244444555
Q ss_pred HHHHH-ccCCeEEEEeCChHHHHHHHHHHH-----cc----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccccc
Q 011149 81 LITVY-AKGGKTIVFTQTKRDADEVSLALT-----SI----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (492)
Q Consensus 81 ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~-----~~----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~G 150 (492)
++..+ ..+.++|+|+.++..++.++.... .. ..+..++++|...+|.+++..|+.|++.++|+|++++.|
T Consensus 298 ~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alelg 377 (851)
T COG1205 298 LAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELG 377 (851)
T ss_pred HHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhc
Confidence 54433 456799999999999999973332 22 358889999999999999999999999999999999999
Q ss_pred CCCCCcCEEEecCCCC-ChhHHHHHhhhcccCCCCCeEEEecCh--hhHHHHHHHHHHhC
Q 011149 151 LDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFTS--SQRRTVRSLERDVG 207 (492)
Q Consensus 151 idi~~v~~VI~~~~P~-~~~~y~qr~GR~gR~g~~g~~i~l~~~--~e~~~~~~l~~~~~ 207 (492)
|||.+++.||++..|. +..+|+||+||+||.++....++++.. -+..++...+....
T Consensus 378 idiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 378 IDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred eeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 9999999999999999 899999999999999877766666552 34555555555554
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=144.86 Aligned_cols=118 Identities=29% Similarity=0.476 Sum_probs=99.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc---------------------------------------cceeeecCCCCHHHHH
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI---------------------------------------IASEALHGDISQHQRE 127 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~---------------------------------------~~~~~lhg~~~~~~r~ 127 (492)
++.++||||++++.|+.++..+... +.++++|.+++.++|+
T Consensus 459 e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~ 538 (1008)
T KOG0950|consen 459 EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEERE 538 (1008)
T ss_pred cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHH
Confidence 3457999999999999988665421 2477889999999999
Q ss_pred HHHhhhcCCCeEEEEecccccccCCCCCcCEEEec---CC-CCChhHHHHHhhhcccCC--CCCeEEEecChhhHHHHHH
Q 011149 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY---EL-PNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRS 201 (492)
Q Consensus 128 ~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~---~~-P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~~~~~ 201 (492)
.+...|++|.+.|++||+.++.|+++|...++|-. .. +.+.-.|.||+|||||+| ..|.+++++.+.+...+..
T Consensus 539 ~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~ 618 (1008)
T KOG0950|consen 539 IIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRE 618 (1008)
T ss_pred HHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHH
Confidence 99999999999999999999999999999988842 22 357889999999999998 5689999999998766665
Q ss_pred HHH
Q 011149 202 LER 204 (492)
Q Consensus 202 l~~ 204 (492)
+.+
T Consensus 619 lv~ 621 (1008)
T KOG0950|consen 619 LVN 621 (1008)
T ss_pred HHh
Confidence 533
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=128.10 Aligned_cols=228 Identities=18% Similarity=0.326 Sum_probs=166.6
Q ss_pred HHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHH-HHHHHHHH--cc
Q 011149 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVY--AK 87 (492)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~--~~ 87 (492)
++++..-| +.++|.||||+-. ...+.|+.++..+.+.+ ...++.+|...+..+.++. +..+++.+ ..
T Consensus 183 k~v~~~rp-dLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg------~~PvEi~Yt~e~erDylEaairtV~qih~~ee 252 (699)
T KOG0925|consen 183 KEVVRNRP-DLKLVVMSATLDA---EKFQRYFGNAPLLAVPG------THPVEIFYTPEPERDYLEAAIRTVLQIHMCEE 252 (699)
T ss_pred HHHHhhCC-CceEEEeecccch---HHHHHHhCCCCeeecCC------CCceEEEecCCCChhHHHHHHHHHHHHHhccC
Confidence 34455554 8999999999843 23456888888777632 2334556666666565554 44445544 34
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc----------cceeeecCCCCHHHHHHHHhhhcC---C--CeEEEEecccccccCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI----------IASEALHGDISQHQRERTLNGFRQ---G--KFTVLVATDVAARGLD 152 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~----------~~~~~lhg~~~~~~r~~~~~~F~~---g--~~~iLVaT~~~~~Gid 152 (492)
++.+|||....++++..++.+... +.|..|| ++++..+++.... + ..+|+|+|++++..+.
T Consensus 253 ~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslt 328 (699)
T KOG0925|consen 253 PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLT 328 (699)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeee
Confidence 678999999999999998888731 5688888 5555666555432 1 3579999999999999
Q ss_pred CCCcCEEEecC------------------CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 153 IPNVDLIIHYE------------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 153 i~~v~~VI~~~------------------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
|+.|.+||+-+ -|.+..+-.||.||+||. ++|.|+.||+.+-. .. ++.
T Consensus 329 idgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~~----------~~---em~ 394 (699)
T KOG0925|consen 329 IDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF----------EK---EMQ 394 (699)
T ss_pred eccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHhh----------hh---cCC
Confidence 99999999543 277889999999999997 69999999987432 11 123
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCC
Q 011149 215 PPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (492)
Q Consensus 215 ~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~ 271 (492)
..+..++++..+..++..|+.+..+++..| ++++.+.++.|+.||-.+..+.
T Consensus 395 ~~typeilrsNL~s~VL~LKklgI~dlvhf-----dfmDpPAPEtLMrALE~LnYLa 446 (699)
T KOG0925|consen 395 PQTYPEILRSNLSSTVLQLKKLGIDDLVHF-----DFMDPPAPETLMRALEVLNYLA 446 (699)
T ss_pred CCCcHHHHHHhhHHHHHHHHhcCcccccCC-----cCCCCCChHHHHHHHHHhhhhh
Confidence 345678999999999999998887777776 6778888999999888876443
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.9e-13 Score=145.68 Aligned_cols=172 Identities=22% Similarity=0.237 Sum_probs=120.7
Q ss_pred CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccH--HHHHHHHHHHHccCCeEEEEeCC
Q 011149 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK--RTILSDLITVYAKGGKTIVFTQT 97 (492)
Q Consensus 20 ~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k--~~~l~~ll~~~~~~~~~iVF~~t 97 (492)
+..+|++|||+|+.+.+..+.++.+...+.......................... ...+..+........+++|.|||
T Consensus 370 g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NT 449 (733)
T COG1203 370 GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNT 449 (733)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEec
Confidence 6899999999999999988888776554432211000000000001101111111 12334444455567899999999
Q ss_pred hHHHHHHHHHHHccc-ceeeecCCCCHHHHHHHHhhhc----CCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHH
Q 011149 98 KRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFR----QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172 (492)
Q Consensus 98 ~~~~~~l~~~l~~~~-~~~~lhg~~~~~~r~~~~~~F~----~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~ 172 (492)
+..|.+++..|+... ++..+|+.+...+|.+.++.++ .....|+|||+|++.|+|+. .+++|-= +..+++++
T Consensus 450 V~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLI 526 (733)
T COG1203 450 VDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLI 526 (733)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHH
Confidence 999999999999744 4999999999999998888654 45778999999999999995 7766642 45577999
Q ss_pred HHhhhcccCC--CCCeEEEecChh
Q 011149 173 HRSGRTGRAG--KEGTAILMFTSS 194 (492)
Q Consensus 173 qr~GR~gR~g--~~g~~i~l~~~~ 194 (492)
||+||++|.| ..+..+++....
T Consensus 527 QR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 527 QRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred HHHHHHhhcccccCCceeEeeccc
Confidence 9999999999 567777765543
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=135.82 Aligned_cols=106 Identities=28% Similarity=0.433 Sum_probs=89.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc-c---------------------------------------ceeeecCCCCHHHHHH
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI-I---------------------------------------ASEALHGDISQHQRER 128 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~-~---------------------------------------~~~~lhg~~~~~~r~~ 128 (492)
-++||||-+++.|++.++.|... + .+.++||++-+--++-
T Consensus 568 LP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~ 647 (1248)
T KOG0947|consen 568 LPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEV 647 (1248)
T ss_pred CceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHH
Confidence 48999999999999999988641 0 3667899999999999
Q ss_pred HHhhhcCCCeEEEEecccccccCCCCCcCEEEec----C----CCCChhHHHHHhhhcccCC--CCCeEEEecChh
Q 011149 129 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY----E----LPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (492)
Q Consensus 129 ~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~----~----~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~ 194 (492)
+...|..|-++||+||..+|.|+|.|.-++|+.- | .--.+-.|.||+||+||.| .+|+++++....
T Consensus 648 VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 648 VELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred HHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9999999999999999999999999988887731 1 1235779999999999988 678888886543
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-12 Score=141.36 Aligned_cols=187 Identities=18% Similarity=0.295 Sum_probs=140.9
Q ss_pred HHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCe
Q 011149 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (492)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 90 (492)
++-|+.+..+.-+|-+|||.=+....++-.-+++-..|...+ ... -.|+.++. +. +...+-..++..+..+++
T Consensus 733 KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP--~~R--~pV~T~V~--~~-d~~~ireAI~REl~RgGQ 805 (1139)
T COG1197 733 KEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP--EDR--LPVKTFVS--EY-DDLLIREAILRELLRGGQ 805 (1139)
T ss_pred HHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC--CCC--cceEEEEe--cC-ChHHHHHHHHHHHhcCCE
Confidence 345667777889999999976666666655666665554321 111 22332322 22 222223445566678899
Q ss_pred EEEEeCChHHHHHHHHHHHcc---cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCC-C
Q 011149 91 TIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP-N 166 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P-~ 166 (492)
+-...|..+..+++++.|+.- ..+.+.||.|+..+-++++..|-+|+++|||||.+.+.|||||+++.+|.-+.- .
T Consensus 806 vfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~f 885 (1139)
T COG1197 806 VFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKF 885 (1139)
T ss_pred EEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccc
Confidence 999999999999999999874 568899999999999999999999999999999999999999999988854332 3
Q ss_pred ChhHHHHHhhhcccCCCCCeEEEecChh------hHHHHHHHHH
Q 011149 167 DPETFVHRSGRTGRAGKEGTAILMFTSS------QRRTVRSLER 204 (492)
Q Consensus 167 ~~~~y~qr~GR~gR~g~~g~~i~l~~~~------e~~~~~~l~~ 204 (492)
-.+++.|..||+||..+.+.||+++.+. -.+.++.|+.
T Consensus 886 GLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 886 GLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred cHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 4679999999999999999999998853 2455666655
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=141.13 Aligned_cols=167 Identities=21% Similarity=0.183 Sum_probs=127.5
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHHHHHHHHHH-HccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~ 99 (492)
++..||.|...+...+.+.|--+.+.| . .+.+.....+ -.+......|...+...+.. +....++||||+|++
T Consensus 367 kl~GmTGTa~te~~E~~~iY~l~vv~I--P---tnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~ 441 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYNLDVVVI--P---TNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIE 441 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhCCCEEEc--C---CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 456688888777666666664332222 1 1111111111 12223445677777766644 346689999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCc----------------------
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV---------------------- 156 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v---------------------- 156 (492)
.++.++..|.+ ++++..||+. +.+|+..+.+|+.+...|+||||+|+||+||+-=
T Consensus 442 ~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~ 519 (830)
T PRK12904 442 KSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKI 519 (830)
T ss_pred HHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHH
Confidence 99999999985 7999999996 8899999999999999999999999999999742
Q ss_pred ----------------CEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 157 ----------------DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 157 ----------------~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
=|||-...|.|..---|-.||+||.|.+|.+..|++-.|
T Consensus 520 ~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 520 KAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred HHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 178888999999999999999999999999999887654
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.1e-12 Score=135.55 Aligned_cols=179 Identities=21% Similarity=0.336 Sum_probs=126.8
Q ss_pred CCCcEEEEeeeCChHHHHHHHHHcC-CCceEEeecccccccccceEEEEEEcCccc---HHHH-----HHHHHHHHccCC
Q 011149 19 PKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATS---KRTI-----LSDLITVYAKGG 89 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~i~~~~~~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~~-----l~~ll~~~~~~~ 89 (492)
...+++.+|||+|+.. +.+. |+. ++.-+-... ...-+..+.|.++-+.... +.++ ...+++...+ .
T Consensus 473 e~~RlVGLSATLPNy~-DV~~-Fl~v~~~glf~fd--~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk-~ 547 (1674)
T KOG0951|consen 473 EGSRLVGLSATLPNYE-DVAS-FLRVDPEGLFYFD--SSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGK-N 547 (1674)
T ss_pred cCceeeeecccCCchh-hhHH-HhccCcccccccC--cccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCC-C
Confidence 4789999999999853 3333 433 443322221 1122344566666554432 2222 3344444433 8
Q ss_pred eEEEEeCChHHHHHHHHHHHcc--------------------------------------cceeeecCCCCHHHHHHHHh
Q 011149 90 KTIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRERTLN 131 (492)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~~--------------------------------------~~~~~lhg~~~~~~r~~~~~ 131 (492)
++|||+.+|+++.+.|..++.. +.+..+|.+|+..+|+.+.+
T Consensus 548 qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~Ed 627 (1674)
T KOG0951|consen 548 QVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVED 627 (1674)
T ss_pred cEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHH
Confidence 9999999999988888877621 24678899999999999999
Q ss_pred hhcCCCeEEEEecccccccCCCCCcCEEE----ecCC------CCChhHHHHHhhhcccCC--CCCeEEEecChhhHHHH
Q 011149 132 GFRQGKFTVLVATDVAARGLDIPNVDLII----HYEL------PNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTV 199 (492)
Q Consensus 132 ~F~~g~~~iLVaT~~~~~Gidi~~v~~VI----~~~~------P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~~~ 199 (492)
.|++|.++|||+|-.+++|+|+|.-+++| -||+ +.++.+.+||.||+||.. ..|..+++....|..+.
T Consensus 628 Lf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyy 707 (1674)
T KOG0951|consen 628 LFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYY 707 (1674)
T ss_pred HHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhh
Confidence 99999999999999999999999888777 3664 457899999999999976 55677777666665544
Q ss_pred HHH
Q 011149 200 RSL 202 (492)
Q Consensus 200 ~~l 202 (492)
..+
T Consensus 708 ls~ 710 (1674)
T KOG0951|consen 708 LSL 710 (1674)
T ss_pred HHh
Confidence 443
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-11 Score=131.00 Aligned_cols=176 Identities=19% Similarity=0.323 Sum_probs=120.8
Q ss_pred CCCCcEEEEeeeCChHHHHHHHHHcC-CCc-eEEeecccccccccceEEEEEEcCcc---cHHH-----HHHHHHHHHcc
Q 011149 18 PPKRQSMLFSATMPSWVKKLSRKYLD-NPL-NIDLVGNQDEKLAEGIKLYAISTTAT---SKRT-----ILSDLITVYAK 87 (492)
Q Consensus 18 ~~~~q~ll~SAT~p~~i~~~~~~~~~-~~~-~i~~~~~~~~~~~~~i~~~~~~~~~~---~k~~-----~l~~ll~~~~~ 87 (492)
....++|.+|||+|+ +.+++. ||+ +|. -+-.-. ..-.+..+.+.++-.+.. .... ....+++.+..
T Consensus 273 qs~IRivgLSATlPN-~eDvA~-fL~vn~~~glfsFd--~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~ 348 (1230)
T KOG0952|consen 273 QSMIRIVGLSATLPN-YEDVAR-FLRVNPYAGLFSFD--QRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQE 348 (1230)
T ss_pred hhheEEEEeeccCCC-HHHHHH-HhcCCCccceeeec--ccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHc
Confidence 456899999999997 456665 555 432 121111 111122233333333222 2221 22345555667
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc------------------------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEe
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI------------------------IASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~------------------------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa 143 (492)
+.+++|||.++..+...|+.|.+. .....+|.+|..++|..+.+.|..|.++||+|
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 889999999999999999888641 12456899999999999999999999999999
Q ss_pred cccccccCCCCCcCEEE----ecCCCC------ChhHHHHHhhhcccCC--CCCeEEEecChhhHH
Q 011149 144 TDVAARGLDIPNVDLII----HYELPN------DPETFVHRSGRTGRAG--KEGTAILMFTSSQRR 197 (492)
Q Consensus 144 T~~~~~Gidi~~v~~VI----~~~~P~------~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~ 197 (492)
|..++.|+|+|+-.++| .||.-. ..-+.+|..||+||.. ..|.++++.+.....
T Consensus 429 TaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 429 TATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred cceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHH
Confidence 99999999999655554 233322 3567799999999975 678888887765443
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=133.75 Aligned_cols=167 Identities=19% Similarity=0.165 Sum_probs=124.3
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHHHH-HHHHHHHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l-~~ll~~~~~~~~~iVF~~t~~ 99 (492)
++-.||.|...+..++.+-|--+. +.+. .+.+.....+ -.+......|..++ ..+...+..+.++||||+|++
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~l~V--v~IP---tnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie 455 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYNLEV--VVIP---TNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIE 455 (896)
T ss_pred hhccCCCCChhHHHHHHHHhCCCE--EECC---CCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHH
Confidence 345678888776666666554332 2221 1221111111 11223334565544 444455567889999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCC-----------------------
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----------------------- 155 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~----------------------- 155 (492)
.++.++..|.+ ++++..||+.+.+.+++.+.++|+.|. |+||||+|+||+||.=
T Consensus 456 ~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~ 533 (896)
T PRK13104 456 ASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAV 533 (896)
T ss_pred HHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHH
Confidence 99999999996 899999999999999999999999995 9999999999999851
Q ss_pred ----------c-----CEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 156 ----------V-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 156 ----------v-----~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
| =|||-...+.|..-=-|-.||+||.|.+|.+..|++-.|
T Consensus 534 ~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 534 KKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1 168888888888888999999999999999999887654
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.2e-11 Score=119.44 Aligned_cols=200 Identities=18% Similarity=0.229 Sum_probs=141.6
Q ss_pred CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc---cc------HHHHHHHHH-HHHccC
Q 011149 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA---TS------KRTILSDLI-TVYAKG 88 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~---~~------k~~~l~~ll-~~~~~~ 88 (492)
.+.|++-.|||+...++.....+--+ .++++.... .+..-+++.+..+. .. +..-...++ +....+
T Consensus 450 ~~~~~~~~~~~~K~~~~~~~~~~~~~--E~~Li~~DG--SPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~ 525 (1034)
T KOG4150|consen 450 INMGVYDGDTPYKDRTRLRSELANLS--ELELVTIDG--SPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHG 525 (1034)
T ss_pred cCcceEeCCCCcCCHHHHHHHhcCCc--ceEEEEecC--CCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcC
Confidence 57899999999987776555433223 333332211 22334455554432 11 121122222 223456
Q ss_pred CeEEEEeCChHHHHHHHHHHHccc---------ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 89 GKTIVFTQTKRDADEVSLALTSII---------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~~---------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
-++|-||+.++.|+.+....++.+ .+..+.|+...++|.++...+-.|++.-+|||++++.||||..++.|
T Consensus 526 ~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAV 605 (1034)
T KOG4150|consen 526 LRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAV 605 (1034)
T ss_pred CcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeE
Confidence 799999999999998876665421 35567899999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEe--cChhhHHHHHHHHHHhCCCceecCCCCHHHHH
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILM--FTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l--~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~ 222 (492)
++.++|.+...+.|..||+||..++..++.+ ..|-+..++..-+.....+-.++.+....+.+
T Consensus 606 l~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~~i 670 (1034)
T KOG4150|consen 606 LHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQNKHV 670 (1034)
T ss_pred EEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecccHHH
Confidence 9999999999999999999999888766555 44667777776666666555555555444433
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-11 Score=132.21 Aligned_cols=166 Identities=19% Similarity=0.225 Sum_probs=124.2
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE--EEEEcCcccHHHH-HHHHHHHHccCCeEEEEeCCh
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL--YAISTTATSKRTI-LSDLITVYAKGGKTIVFTQTK 98 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~--~~~~~~~~~k~~~-l~~ll~~~~~~~~~iVF~~t~ 98 (492)
++..||.|...+..++.+.|--+.+.| +.+.+.....+ ..+ .....|..+ +..+...+..+.++||||+|+
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~l~Vv~I-----PTnkp~~R~d~~d~iy-~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv 459 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYGLDTVVV-----PTNRPMVRKDMADLVY-LTADEKYQAIIKDIKDCRERGQPVLVGTVSI 459 (908)
T ss_pred HhhcccCCChHHHHHHHHHhCCCEEEC-----CCCCCccceeCCCcEE-eCHHHHHHHHHHHHHHHHHcCCCEEEEeCcH
Confidence 345678888766666665553332222 11222111111 122 222345444 445555566788999999999
Q ss_pred HHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCC----------------------
Q 011149 99 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN---------------------- 155 (492)
Q Consensus 99 ~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~---------------------- 155 (492)
+.++.++..|.. ++++..||+.+++.+++.+.++|+.|. |+|||++++||+||.=
T Consensus 460 ~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~ 537 (908)
T PRK13107 460 EQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKI 537 (908)
T ss_pred HHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHH
Confidence 999999999986 899999999999999999999999998 9999999999999961
Q ss_pred ----------c-----CEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 156 ----------V-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 156 ----------v-----~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
| =|||-...+.|..-=-|-.||+||.|.+|.+..|++-.|
T Consensus 538 ~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 538 KADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred HHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 1 278888899998888999999999999999999988655
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.6e-12 Score=130.42 Aligned_cols=204 Identities=20% Similarity=0.312 Sum_probs=136.1
Q ss_pred CCcEEEEeeeCChHHHHHH--HHHcC-CCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHc--cCCeEEEE
Q 011149 20 KRQSMLFSATMPSWVKKLS--RKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA--KGGKTIVF 94 (492)
Q Consensus 20 ~~q~ll~SAT~p~~i~~~~--~~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~--~~~~~iVF 94 (492)
..++|+||||+ .+.++. +..+. -|..|.+...+ .+..| |+.-..+...-.++....+..+. +.+-+|||
T Consensus 414 pLKLIIMSATL--RVsDFtenk~LFpi~pPlikVdARQ---fPVsI-HF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVF 487 (1172)
T KOG0926|consen 414 PLKLIIMSATL--RVSDFTENKRLFPIPPPLIKVDARQ---FPVSI-HFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVF 487 (1172)
T ss_pred ceeEEEEeeeE--EecccccCceecCCCCceeeeeccc---CceEE-EeccCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 46789999998 233433 22333 23445443221 12222 33333444444555555555443 56789999
Q ss_pred eCChHHHHHHHHHHHccc--------------------------------------------------------------
Q 011149 95 TQTKRDADEVSLALTSII-------------------------------------------------------------- 112 (492)
Q Consensus 95 ~~t~~~~~~l~~~l~~~~-------------------------------------------------------------- 112 (492)
+....++++|++.|++.+
T Consensus 488 vTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa 567 (1172)
T KOG0926|consen 488 VTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAA 567 (1172)
T ss_pred EeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhh
Confidence 999999999999987531
Q ss_pred --------------------------------------ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC
Q 011149 113 --------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (492)
Q Consensus 113 --------------------------------------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~ 154 (492)
.|..|++-|+.+.+.++++.--.|..-++|||+||+..|.||
T Consensus 568 ~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIP 647 (1172)
T KOG0926|consen 568 FNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIP 647 (1172)
T ss_pred hhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccC
Confidence 244567778899999999999999999999999999999999
Q ss_pred CcCEEEecCC--------C----------CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 155 NVDLIIHYEL--------P----------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 155 ~v~~VI~~~~--------P----------~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
+|.+||+.+. - .+.++--||+||+||.| +|+||-||+..=. ...|+..
T Consensus 648 gIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf----------~~~Fe~f--- 713 (1172)
T KOG0926|consen 648 GIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVF----------SNDFEEF--- 713 (1172)
T ss_pred CeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHh----------hcchhhh---
Confidence 9999995442 2 24556689999999987 8999999986321 1112211
Q ss_pred CHHHHHHHHHHHHHHHhccCCccchhh
Q 011149 217 VVEDVLESSAEQVVATLNGVHPESVEF 243 (492)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (492)
+..+|++.-.+.++..++..+...+..
T Consensus 714 S~PEIlk~Pve~lvLqMKsMnI~kVvn 740 (1172)
T KOG0926|consen 714 SLPEILKKPVESLVLQMKSMNIDKVVN 740 (1172)
T ss_pred ccHHHhhCcHHHHHHHHHhcCccceec
Confidence 234566666667777777665544443
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.5e-12 Score=128.68 Aligned_cols=250 Identities=16% Similarity=0.201 Sum_probs=165.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccccc-CCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G-idi~~v 156 (492)
...+||.+||++.|.++...+.+ .+.+.+++|+.+...+..-+++ .++|+|||+ .+..| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccce
Confidence 45799999999999999988874 2558999999999888888877 789999998 44444 788899
Q ss_pred CEEEe--------cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHH-------
Q 011149 157 DLIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV------- 221 (492)
Q Consensus 157 ~~VI~--------~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~------- 221 (492)
+++|. .++-.++...++.+.++-| ..++++.+=...++.|...+......+.+-...+.
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r------Qtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~ 314 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR------QTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIR 314 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc------cEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchh
Confidence 99882 3334466777777777655 45565555455566665544434444333322111
Q ss_pred ----------HHHHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEE
Q 011149 222 ----------LESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288 (492)
Q Consensus 222 ----------~~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~ 288 (492)
....+..++....+.....+..|.++ +++|...+....+.+..+|.. .+|..+...|..+++|...
T Consensus 315 qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd-~sQ~eR~~~L~~FreG~~~ 393 (519)
T KOG0331|consen 315 QIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGD-KSQSERDWVLKGFREGKSP 393 (519)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeeccc-ccHHHHHHHHHhcccCCcc
Confidence 01122222222222222233344333 333333332222334444443 4555555667789999999
Q ss_pred EEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHHHH-HHHHh
Q 011149 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIA-KELLN 350 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~~a-~~~i~ 350 (492)
++|+|+. |++++|+.+|..+|+++.|...++ |||+..+...+.+.+||....... ..+++
T Consensus 394 vLVATdV--AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~ 458 (519)
T KOG0331|consen 394 VLVATDV--AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIK 458 (519)
T ss_pred eEEEccc--ccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHH
Confidence 9999999 899999999999999999998876 899999877778889998765443 34443
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=135.49 Aligned_cols=135 Identities=18% Similarity=0.353 Sum_probs=111.2
Q ss_pred ccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCC---CeEEEEeccc
Q 011149 72 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG---KFTVLVATDV 146 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g---~~~iLVaT~~ 146 (492)
..|+.+|..+|..+. .+.++|||+......+.|...|.. .+....+||.++..+|+.+++.|+.. ..-+|++|.+
T Consensus 470 SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 470 SGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 467888888887663 457999999999999999999874 78899999999999999999999753 3467899999
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEE--EecChh--hHHHHHHHHHHh
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAI--LMFTSS--QRRTVRSLERDV 206 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i--~l~~~~--e~~~~~~l~~~~ 206 (492)
.+.|||+..+++||+||+||++..+.|+++|+.|.|.+..+. .|++.. |...++...+++
T Consensus 550 GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl 613 (1033)
T PLN03142 550 GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 613 (1033)
T ss_pred cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999765544 344432 445555444443
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-11 Score=126.07 Aligned_cols=107 Identities=24% Similarity=0.406 Sum_probs=89.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-c---------------------------------------ceeeecCCCCHHHHH
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI-I---------------------------------------ASEALHGDISQHQRE 127 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-~---------------------------------------~~~~lhg~~~~~~r~ 127 (492)
..++|||+-++++|+.+|..+.+. + .+.++|++|-+--++
T Consensus 383 ~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE 462 (1041)
T KOG0948|consen 383 YLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKE 462 (1041)
T ss_pred CCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHH
Confidence 458999999999999999888641 1 356789999999999
Q ss_pred HHHhhhcCCCeEEEEecccccccCCCCCcCEEEe----cCC----CCChhHHHHHhhhcccCC--CCCeEEEecChh
Q 011149 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YEL----PNDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (492)
Q Consensus 128 ~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----~~~----P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~ 194 (492)
.+.-.|..|-+++|+||...+.|||.|.-++|+- ||- -.+.-.|+||+||+||.| ..|.||++++..
T Consensus 463 ~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 463 VIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred HHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 9999999999999999999999999998887762 331 125678999999999988 568899988754
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5e-11 Score=125.21 Aligned_cols=255 Identities=18% Similarity=0.198 Sum_probs=134.4
Q ss_pred eEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCcCE
Q 011149 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 158 (492)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v~~ 158 (492)
++||.+||++.|.++++.+.. .+.+..++|+++...+...+. +..+|||+|+ .....+++..+++
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHc----CCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 699999999999999988874 256778899988776544332 4678999997 2344567888988
Q ss_pred EEecCCC--CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH----HHH-------H-HH
Q 011149 159 IIHYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV----EDV-------L-ES 224 (492)
Q Consensus 159 VI~~~~P--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~----~~~-------~-~~ 224 (492)
||.=+.- .+ ..|.+.+-+.-..-.....+++++.+-...++.+...+......+.+... +.+ . +.
T Consensus 153 lViDEah~ll~-~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~ 231 (456)
T PRK10590 153 LVLDEADRMLD-MGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR 231 (456)
T ss_pred EEeecHHHHhc-cccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHH
Confidence 8742110 00 01222111111111123455666655444445554444333322111100 000 0 01
Q ss_pred HHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCccccCC
Q 011149 225 SAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGF 301 (492)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 301 (492)
..+.+...+.......+..|..+ ++.+.+.+....+.+...|. ++++..+.+.+..++.+.+.++|+++. ..+|
T Consensus 232 k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg-~~~~~~R~~~l~~F~~g~~~iLVaTdv--~~rG 308 (456)
T PRK10590 232 KRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHG-NKSQGARTRALADFKSGDIRVLVATDI--AARG 308 (456)
T ss_pred HHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEEC-CCCHHHHHHHHHHHHcCCCcEEEEccH--HhcC
Confidence 11111122222222222333222 22222221111111111110 122222333445677888999999997 6889
Q ss_pred CChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHHHHHHHHhhc
Q 011149 302 MSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352 (492)
Q Consensus 302 ~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~~ 352 (492)
+|..+|..+|++..|...++ +||.......+...+++...+....+-++..
T Consensus 309 iDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~ 363 (456)
T PRK10590 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKL 363 (456)
T ss_pred CCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHH
Confidence 99999999999988876544 7888887665555567766655444444443
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.2e-11 Score=122.59 Aligned_cols=93 Identities=33% Similarity=0.563 Sum_probs=88.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 165 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P 165 (492)
...++||||.++..++.++..+.. .+ +..+.+..++.+|..++++|+.+.+++||++.++.+|+|+|+++++|...+.
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t 360 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPT 360 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCC
Confidence 356999999999999999999985 44 8899999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhhhccc
Q 011149 166 NDPETFVHRSGRTGR 180 (492)
Q Consensus 166 ~~~~~y~qr~GR~gR 180 (492)
.+...|+||+||.-|
T Consensus 361 ~S~~~~~Q~lGR~LR 375 (442)
T COG1061 361 GSRRLFIQRLGRGLR 375 (442)
T ss_pred CcHHHHHHHhhhhcc
Confidence 999999999999999
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-09 Score=111.24 Aligned_cols=105 Identities=17% Similarity=0.307 Sum_probs=86.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc--------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI--------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~--------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
.+-++||.+-......|...|... +.+..+|+.++..++.++.+....+..++++.|.+++.-|.|.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 467899999999988888877532 578889999999999999999999999999999999999999998888
Q ss_pred EecCC------------------CCChhHHHHHhhhcccCCCCCeEEEecCh
Q 011149 160 IHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (492)
Q Consensus 160 I~~~~------------------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (492)
|+.+. -.+....+||.||++|. ++|.|..+.+.
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 84332 12556779999999987 57788777654
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.6e-10 Score=127.00 Aligned_cols=93 Identities=23% Similarity=0.421 Sum_probs=81.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHccc----------ceeeecCCCCHHHHHHHHhhhcCCCe-EEEEecccccccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSII----------ASEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~~----------~~~~lhg~~~~~~r~~~~~~F~~g~~-~iLVaT~~~~~Gidi~~v 156 (492)
..++||||.+++.|+.+++.|.+.+ .+..+||+++ ++.+++++|+++.. .|||+++++.+|+|+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 3699999999999999998876421 3566899875 46789999999887 699999999999999999
Q ss_pred CEEEecCCCCChhHHHHHhhhcccCC
Q 011149 157 DLIIHYELPNDPETFVHRSGRTGRAG 182 (492)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~g 182 (492)
++||.++++.|...|+||+||+.|.-
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCC
Confidence 99999999999999999999999953
|
|
| >PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-10 Score=92.86 Aligned_cols=95 Identities=38% Similarity=0.563 Sum_probs=52.4
Q ss_pred CCCCCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCC-CcCccccEEEeecCccceeEeecCHHHHHH
Q 011149 269 GFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIAKE 347 (492)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~ig~i~~~~~~~~~gs~fdv~~~~a~~ 347 (492)
|+++ ++.|||+++.+|++|+.+....++ -++..++..|.+..+. ..+.|++|.++++. +|++||||++.+++
T Consensus 1 G~t~-~~~RSLLt~~~g~vTl~l~~~~~i----~~~~y~~~~L~~~L~e~~~~~v~~m~l~~d~--~GavFDvP~~~~~~ 73 (97)
T PF08152_consen 1 GYTE-IKQRSLLTSEEGFVTLQLTCSREI----RSPGYAWRILRRQLSEEIADKVKGMTLLKDK--MGAVFDVPSEIAEE 73 (97)
T ss_dssp S-S--------------EEEEEEE-SS------SSTHHHHHHHHHHS-HHHHTT-EEEEE-TTS--SEEEEEEEHHHHHH
T ss_pred CCCC-CCccccccCCCCCEEEEEEcCCcC----CCchhHHHHHHHhcCHHHHHhhCcEEEecCC--CEEEEEChHHHHHH
Confidence 4566 788999999999999999888643 4577788888777664 56679999999885 68999999999999
Q ss_pred HHhhcCCC-CCceeeeccCCCCCC
Q 011149 348 LLNKQIPP-GNTISKITKLPALQD 370 (492)
Q Consensus 348 ~i~~~~~~-~i~~~~~~~lp~~~~ 370 (492)
+++.+.+. +++++++++||++++
T Consensus 74 ~~~~~~~~~~~~l~v~~~LPeL~e 97 (97)
T PF08152_consen 74 FLAKWEDSRGWQLSVATELPELQE 97 (97)
T ss_dssp HHHH--SS-S-EEE----------
T ss_pred HHHhCcccCCcEEEEcccCcCccC
Confidence 99999885 899999999999874
|
; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A. |
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-10 Score=122.90 Aligned_cols=239 Identities=17% Similarity=0.238 Sum_probs=158.7
Q ss_pred EEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccccc-CCCCCcCE
Q 011149 91 TIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVDL 158 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G-idi~~v~~ 158 (492)
+||++||++.|.++++.+.. .+.+..++|+++...+...++. + .+|||+|+ .+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999999998874 2558899999998887766655 4 89999998 55565 89999998
Q ss_pred EEe------cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH------HHHH----
Q 011149 159 IIH------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV------EDVL---- 222 (492)
Q Consensus 159 VI~------~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~------~~~~---- 222 (492)
+|. +|+ .|..-+-.....-..-..+++++.+-...+..+.+.+..++..+.+... ..+.
T Consensus 178 lVlDEADrmLd~-----Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~ 252 (513)
T COG0513 178 LVLDEADRMLDM-----GFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYL 252 (513)
T ss_pred EEeccHhhhhcC-----CCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEE
Confidence 883 444 2222222222211225677787776555677777776665544333311 1100
Q ss_pred ----H-HHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeec
Q 011149 223 ----E-SSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294 (492)
Q Consensus 223 ----~-~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 294 (492)
+ .+...+...+..........|..+ ++.|...+....+.++.+|.. ++|..+.+.+..++.+..+++|++|
T Consensus 253 ~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~-l~q~~R~~~l~~F~~g~~~vLVaTD 331 (513)
T COG0513 253 EVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGD-LPQEERDRALEKFKDGELRVLVATD 331 (513)
T ss_pred EeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCC-CCHHHHHHHHHHHHcCCCCEEEEec
Confidence 1 244444555554444444444433 333333333323333334433 4555556677788899999999999
Q ss_pred CccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecC
Q 011149 295 SAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP 341 (492)
Q Consensus 295 ~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~ 341 (492)
. +++|+|+.+|.++||++.|...++ |||+..+...+.+.+|+.-.
T Consensus 332 v--aaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 332 V--AARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred h--hhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 9 799999999999999999987665 89999988777777888763
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-09 Score=107.46 Aligned_cols=250 Identities=13% Similarity=0.180 Sum_probs=154.2
Q ss_pred eEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCcCE
Q 011149 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 158 (492)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v~~ 158 (492)
-.+|.|||++.|.+|....++ ++.++++||+++.-++...|+. ...|+|||+ |--.++|+..|++
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~----g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKE----GAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhc----CCeEEEechHHHHHHHHhhcccceeeeE
Confidence 357889999999998776654 3778999999999998888874 778999998 5556789999998
Q ss_pred EE------ecCCC--CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC---CCCHHHHH-----
Q 011149 159 II------HYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS---PPVVEDVL----- 222 (492)
Q Consensus 159 VI------~~~~P--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~---~p~~~~~~----- 222 (492)
+| +||+- ..+.+..|.+ ++-...++++.+-...+..+.+.+...+.++. +....+-+
T Consensus 374 LV~DEadrmfdmGfe~qVrSI~~hi-------rpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~ 446 (731)
T KOG0339|consen 374 LVLDEADRMFDMGFEPQVRSIKQHI-------RPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVS 446 (731)
T ss_pred EEEechhhhhccccHHHHHHHHhhc-------CCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheee
Confidence 77 34432 1233333333 34566778888888888888777655443321 11111100
Q ss_pred -----HHHHHHHHHHhccCCc-cchhhhHH---HHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEee
Q 011149 223 -----ESSAEQVVATLNGVHP-ESVEFFTP---TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTR 293 (492)
Q Consensus 223 -----~~~~~~~~~~l~~~~~-~~~~~f~~---~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 293 (492)
..++.-++..|..... ..+..|.. .++++...+....+...++|.. +.|..+...|..++.....+++++
T Consensus 447 V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgd-kdqa~rn~~ls~fKkk~~~Vlvat 525 (731)
T KOG0339|consen 447 VCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGD-KDQAERNEVLSKFKKKRKPVLVAT 525 (731)
T ss_pred eccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCc-hhhHHHHHHHHHHhhcCCceEEEe
Confidence 1222333333333222 22222211 1333333333333333344433 334444455667777888899999
Q ss_pred cCccccCCCChhHHHHHHhhhCCCCc----CccccEEEeecCccceeEeec-CHHHHHHHHhhcC
Q 011149 294 DSAFSRGFMSARSVMGFLSDVYPTAA----DEIGKIHIIADDRVQGAVFDL-PEEIAKELLNKQI 353 (492)
Q Consensus 294 ~~~~~~~~~~~~~i~~~i~~~~~~~~----~~ig~i~~~~~~~~~gs~fdv-~~~~a~~~i~~~~ 353 (492)
+. +++++++.+|--+|+++.--.- ..||++.+....++.-++|.- +.+.+-.+++.++
T Consensus 526 Dv--aargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe 588 (731)
T KOG0339|consen 526 DV--AARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLE 588 (731)
T ss_pred eH--hhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHh
Confidence 98 7899999999999998753222 238999998777766666644 3445556665544
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.5e-09 Score=114.30 Aligned_cols=104 Identities=25% Similarity=0.439 Sum_probs=85.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc-----------------------------c-------------ceeeecCCCCHHHH
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI-----------------------------I-------------ASEALHGDISQHQR 126 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~-----------------------------~-------------~~~~lhg~~~~~~r 126 (492)
-++|+|+-++..|+..+..+... + .+.++|++|-+..+
T Consensus 380 lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K 459 (1041)
T COG4581 380 LPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIK 459 (1041)
T ss_pred CceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHH
Confidence 58999999999999887766410 1 13467999999999
Q ss_pred HHHHhhhcCCCeEEEEecccccccCCCCCcCEEE----ecC----CCCChhHHHHHhhhcccCC--CCCeEEEecC
Q 011149 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----HYE----LPNDPETFVHRSGRTGRAG--KEGTAILMFT 192 (492)
Q Consensus 127 ~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI----~~~----~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~ 192 (492)
..+.+.|..|-++||+||.+++.|||.|.-++|+ .+| -+-++..|+|+.||+||.| ..|.++++-.
T Consensus 460 ~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 460 ELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred HHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 9999999999999999999999999999777766 122 3457899999999999988 5688888733
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.6e-08 Score=107.25 Aligned_cols=244 Identities=11% Similarity=0.110 Sum_probs=129.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccc--cCCCCCc
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR--GLDIPNV 156 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~--Gidi~~v 156 (492)
.++||.++|++.|.++++.+.. .+.+..+||+.+...+...++. ..+|||+|+ .+.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~----~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ----GVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC----CCCEEEECHHHHHHHHHhccccchhhe
Confidence 5899999999999999988764 3568899999988877666643 678999996 2222 3667778
Q ss_pred CEEEecCCC--CChhHHHHHhhhcccC-C-CCCeEEEecChhhHHHHHHHHHHhCCCceec--CCCC--HHH--------
Q 011149 157 DLIIHYELP--NDPETFVHRSGRTGRA-G-KEGTAILMFTSSQRRTVRSLERDVGCKFEFV--SPPV--VED-------- 220 (492)
Q Consensus 157 ~~VI~~~~P--~~~~~y~qr~GR~gR~-g-~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~--~~p~--~~~-------- 220 (492)
.+||.=+.- .+ ..|...+-..-+. . .....+++++.+-...+..+..........+ .... ...
T Consensus 161 ~~lViDEAh~lld-~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~ 239 (572)
T PRK04537 161 EICVLDEADRMFD-LGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP 239 (572)
T ss_pred eeeEecCHHHHhh-cchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec
Confidence 877631110 00 0122222111111 1 1134566666554433333333222211111 0000 000
Q ss_pred HHHHHHHHHHHHhccCCccchhhhH---HHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCcc
Q 011149 221 VLESSAEQVVATLNGVHPESVEFFT---PTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF 297 (492)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~f~---~~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 297 (492)
........+...+..........|. ..++.+.+.+....+...++|. .+++..+.+.+..++.+...++|+++.
T Consensus 240 ~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg-~l~~~eR~~il~~Fr~G~~~VLVaTdv-- 316 (572)
T PRK04537 240 ADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSG-DVPQKKRESLLNRFQKGQLEILVATDV-- 316 (572)
T ss_pred CHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeC-CCCHHHHHHHHHHHHcCCCeEEEEehh--
Confidence 0011222233333322222222332 2233333222111111111111 122222333455677889999999997
Q ss_pred ccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeec
Q 011149 298 SRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL 340 (492)
Q Consensus 298 ~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv 340 (492)
..+|+|..+|..+|+++.|...++ +||.......+...+|+.-
T Consensus 317 ~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~ 363 (572)
T PRK04537 317 AARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACE 363 (572)
T ss_pred hhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecH
Confidence 688999999999999988866554 7888887665554556543
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.8e-09 Score=100.64 Aligned_cols=242 Identities=14% Similarity=0.164 Sum_probs=151.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-----------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----------
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI-----------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD----------- 145 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-----------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~----------- 145 (492)
+.-.||.|++++.|.+.++.+... +.+..--|+++-.++..++++ .+.|+|||+
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~----GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRR----GVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhc----CeeEEEcCcchHHHHHHHhh
Confidence 346799999999999988877643 234455688999998888877 789999998
Q ss_pred ---cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH----
Q 011149 146 ---VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV---- 218 (492)
Q Consensus 146 ---~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~---- 218 (492)
-+-|-+-+...+-+|+.++-.++.+..--. +.....+|++.+....++.+.+....++..+.+-..
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~F-------K~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAs 394 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFF-------KGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAAS 394 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHH-------hhhhheeeeeccccHHHHHHHHhhcccceEEecccccccc
Confidence 123334445555566666655543322111 223567889999988999988887766655433221
Q ss_pred ----HHH--H--HHHHHHHHHHhccCCccchhhhHHH--HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEE
Q 011149 219 ----EDV--L--ESSAEQVVATLNGVHPESVEFFTPT--AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288 (492)
Q Consensus 219 ----~~~--~--~~~~~~~~~~l~~~~~~~~~~f~~~--a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~ 288 (492)
.++ + ++++-.+++-|....+..+.+-... +..+-+.+-...+.+...|. |..|..+.+.+..++.|...
T Consensus 395 ldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHG-GKDQedR~~ai~afr~gkKD 473 (610)
T KOG0341|consen 395 LDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHG-GKDQEDRHYAIEAFRAGKKD 473 (610)
T ss_pred hhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeec-CcchhHHHHHHHHHhcCCCc
Confidence 111 1 2344455566666555444332111 11111111111111111121 24444555667778889999
Q ss_pred EEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH
Q 011149 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE 343 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~ 343 (492)
++++++. +..|+|-.+|-|+||++.|..-++ |||+....+.+.+-+|+.-..+
T Consensus 474 VLVATDV--ASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 474 VLVATDV--ASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred eEEEecc--hhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 9999998 788999999999999999876554 8888877766655577765443
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=103.89 Aligned_cols=114 Identities=23% Similarity=0.341 Sum_probs=88.2
Q ss_pred HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcC--CCeEEEEecccccccCC
Q 011149 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLD 152 (492)
Q Consensus 77 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~--g~~~iLVaT~~~~~Gid 152 (492)
.+..-++.+.+ +-||| |-+++..-.+...+.+ ...+++++|.||++.|.+--..|.+ ++++||||||++.+|+|
T Consensus 347 ~~~~sl~nlk~-GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLN 424 (700)
T KOG0953|consen 347 TALGSLSNLKP-GDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLN 424 (700)
T ss_pred hhhhhhccCCC-CCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccc
Confidence 33344444433 44444 3357778888888875 3459999999999999999999988 89999999999999999
Q ss_pred CCCcCEEEecCC---------CCChhHHHHHhhhcccCC---CCCeEEEecCh
Q 011149 153 IPNVDLIIHYEL---------PNDPETFVHRSGRTGRAG---KEGTAILMFTS 193 (492)
Q Consensus 153 i~~v~~VI~~~~---------P~~~~~y~qr~GR~gR~g---~~g~~i~l~~~ 193 (492)
+ +|+-||.|++ |.+..+..|-+||+||.+ ..|.+.+|...
T Consensus 425 L-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 425 L-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred c-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHh
Confidence 9 6888997775 456788899999999977 45666666543
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.8e-08 Score=103.31 Aligned_cols=166 Identities=19% Similarity=0.199 Sum_probs=112.1
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEE-EEEcCcccHHHHH-HHHHHHHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~l-~~ll~~~~~~~~~iVF~~t~~ 99 (492)
++..||.|.-.+-.++.+.|--+. +.+ +.+.+.....+- .+......|+.++ ..+...+..+.|+||.|.|.+
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~l~V--v~I---PTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe 437 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYNMRV--NVV---PTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVE 437 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhCCCE--EEC---CCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 455678887666556665553322 222 112211111111 1222333455444 445555667889999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCC-CeEEEEecccccccCCCCCcC--------EEEecCCCCChh
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDVAARGLDIPNVD--------LIIHYELPNDPE 169 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~iLVaT~~~~~Gidi~~v~--------~VI~~~~P~~~~ 169 (492)
..+.|+..|.+ +++..+|+..- .+++..+-. ..| .-.|.|||++|.||.||.--. |||....|.+..
T Consensus 438 ~SE~ls~~L~~~gi~h~vLNAk~--~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrR 514 (925)
T PRK12903 438 DSETLHELLLEANIPHTVLNAKQ--NAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRR 514 (925)
T ss_pred HHHHHHHHHHHCCCCceeecccc--hhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHH
Confidence 99999999986 78888888863 333333322 223 346999999999999996322 899999999988
Q ss_pred HHHHHhhhcccCCCCCeEEEecChhh
Q 011149 170 TFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 170 ~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
---|-.||+||.|.+|.+..|++-.|
T Consensus 515 IDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 515 IDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred HHHHHhcccccCCCCCcceEEEecch
Confidence 88999999999999999888887654
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.8e-08 Score=103.95 Aligned_cols=183 Identities=18% Similarity=0.312 Sum_probs=119.4
Q ss_pred CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccH-----HHHHHHHHHHHccCCeEE
Q 011149 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-----RTILSDLITVYAKGGKTI 92 (492)
Q Consensus 18 ~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k-----~~~l~~ll~~~~~~~~~i 92 (492)
-.++++||-|||..-+ ....---.....+.+...........+....+....... ..++..+-+.+..+.++|
T Consensus 347 ~~~~pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~l 424 (730)
T COG1198 347 KENAPVVLGSATPSLE--SYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVL 424 (730)
T ss_pred HhCCCEEEecCCCCHH--HHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEE
Confidence 3589999999998544 333221111233444332222223333333222222222 445566666667788999
Q ss_pred EEeCChH------------------------------------------------------------HHHHHHHHHHcc-
Q 011149 93 VFTQTKR------------------------------------------------------------DADEVSLALTSI- 111 (492)
Q Consensus 93 VF~~t~~------------------------------------------------------------~~~~l~~~l~~~- 111 (492)
+|.|.+- -++.+.+.|.+.
T Consensus 425 lflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F 504 (730)
T COG1198 425 LFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF 504 (730)
T ss_pred EEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC
Confidence 9988654 256777777653
Q ss_pred --cceeeecCCCCHH--HHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCC------CC------ChhHHHHHh
Q 011149 112 --IASEALHGDISQH--QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL------PN------DPETFVHRS 175 (492)
Q Consensus 112 --~~~~~lhg~~~~~--~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~------P~------~~~~y~qr~ 175 (492)
.++..+.+|.+.. .-+..++.|.+|+.+|||.|++++.|.|+|++++|...|. |. ....+.|-+
T Consensus 505 P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Qva 584 (730)
T COG1198 505 PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVA 584 (730)
T ss_pred CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHH
Confidence 4567777776543 3567899999999999999999999999999998774332 21 234568899
Q ss_pred hhcccCCCCCeEEEecChhhHHHHHHH
Q 011149 176 GRTGRAGKEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 176 GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (492)
||+||.+++|.+++-....+...++.+
T Consensus 585 GRAgR~~~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 585 GRAGRAGKPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred hhhccCCCCCeEEEEeCCCCcHHHHHH
Confidence 999999999998887666565555544
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-08 Score=99.51 Aligned_cols=252 Identities=13% Similarity=0.145 Sum_probs=153.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCcC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v~ 157 (492)
...+||+++|++.+.++.....+ .+...+++|+-...++.+-+++ ...|+|||+ ...--||+..++
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkr----gveiiiatPgrlndL~~~n~i~l~siT 369 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKR----GVEIIIATPGRLNDLQMDNVINLASIT 369 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhc----CceEEeeCCchHhhhhhcCeeeeeeeE
Confidence 35799999999999988766653 4677788887666665555554 679999998 234456777788
Q ss_pred EEEe------cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC-----------------
Q 011149 158 LIIH------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS----------------- 214 (492)
Q Consensus 158 ~VI~------~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~----------------- 214 (492)
++|. +|+- |.-.+-+.-=.=++-...++.+.+=..-+++|...+.+.+-.+.
T Consensus 370 YlVlDEADrMLDMg-----FEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~ 444 (629)
T KOG0336|consen 370 YLVLDEADRMLDMG-----FEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNII 444 (629)
T ss_pred EEEecchhhhhccc-----ccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEE
Confidence 7773 4442 22222222211234455666666656667777666544432211
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCccchhhhHH--HHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEe
Q 011149 215 PPVVEDVLESSAEQVVATLNGVHPESVEFFTP--TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292 (492)
Q Consensus 215 ~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~--~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 292 (492)
++...+-. .....+++.+.. ..+.+.+... .|..|-..+....+.+.-+|.. .+|..+++++..++.|.++++++
T Consensus 445 v~~d~~k~-~~~~~f~~~ms~-ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~-r~Q~DrE~al~~~ksG~vrILva 521 (629)
T KOG0336|consen 445 VTTDSEKL-EIVQFFVANMSS-NDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGN-REQSDREMALEDFKSGEVRILVA 521 (629)
T ss_pred ecccHHHH-HHHHHHHHhcCC-CceEEEEEechhhhhhccchhhhcccchhhccCC-hhhhhHHHHHHhhhcCceEEEEE
Confidence 11111111 122222222221 1112222111 2444444444444444444443 34555667788899999999999
Q ss_pred ecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecC-HHHHHHHHhhcC
Q 011149 293 RDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP-EEIAKELLNKQI 353 (492)
Q Consensus 293 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~-~~~a~~~i~~~~ 353 (492)
++. +.+|+|+.||.|++|++.|..-+. +|++..+...+...+|+.-. -.+++++|+-+.
T Consensus 522 TDl--aSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe 585 (629)
T KOG0336|consen 522 TDL--ASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILE 585 (629)
T ss_pred ech--hhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHH
Confidence 998 799999999999999999976554 88888887766666787664 456677776543
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.5e-08 Score=102.32 Aligned_cols=168 Identities=18% Similarity=0.161 Sum_probs=115.6
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHH-HHHHHHHHccCCeEEEEeCChHH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKRD 100 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~~~~~~~iVF~~t~~~ 100 (492)
.+..||.|...+..++.+.|--+ ++.+. ........+.....+ .....|..+ +..+...+..+.|+||.|.+.+.
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~l~--Vv~IP-tnkp~~R~d~~d~iy-~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~ 439 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYDLG--VSVIP-PNKPNIREDEADRVY-ATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAE 439 (764)
T ss_pred hheeecCCChhHHHHHHHHhCCc--EEECC-CCCCceeecCCCceE-eCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHH
Confidence 46678999877777776666433 22221 111111111111222 223345544 44555666778899999999999
Q ss_pred HHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCC----------c-----CEEEecCC
Q 011149 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----------V-----DLIIHYEL 164 (492)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~----------v-----~~VI~~~~ 164 (492)
.+.|+..|.+ +++..+|+..-...+-+.+-++=+ .-.|.|||++|.||.||.- | =|||-...
T Consensus 440 SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~--~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer 517 (764)
T PRK12326 440 SEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGK--YGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR 517 (764)
T ss_pred HHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCC--CCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC
Confidence 9999999996 788888988744333333333323 2359999999999999862 2 27999999
Q ss_pred CCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 165 P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
|.|..--.|-.||+||.|.+|.+..|++-.|
T Consensus 518 heSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 518 HRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 9999999999999999999999999888655
|
|
| >PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.8e-09 Score=57.37 Aligned_cols=17 Identities=59% Similarity=1.499 Sum_probs=16.0
Q ss_pred CcccCCCCCcccCCCCC
Q 011149 476 ACFNCGKSGHRASECPN 492 (492)
Q Consensus 476 ~c~~cg~~gh~a~~cp~ 492 (492)
.||+||++||+|+|||+
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 49999999999999996
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C .... |
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.7e-09 Score=100.27 Aligned_cols=248 Identities=15% Similarity=0.164 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc----
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD---- 145 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~---- 145 (492)
+.+|..||..- +...++|.+||++.|.+|++.+.. ++.+..|-|++....+...+.+ +..|||||+
T Consensus 117 LPIl~~LL~~p-~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~k----kPhilVaTPGrL~ 191 (476)
T KOG0330|consen 117 LPILQRLLQEP-KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK----KPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHcCC-CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhc----CCCEEEeCcHHHH
Confidence 44555655532 346899999999999999998873 4789999999877665544444 677999998
Q ss_pred --cc-cccCCCCCcCEEE--------ecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 146 --VA-ARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 146 --~~-~~Gidi~~v~~VI--------~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
+. ..|+.+..+.+.| +.|+-...+.++-.+- .....+|++.+....+.+|++.....+..+.
T Consensus 192 dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip-------~erqt~LfsATMt~kv~kL~rasl~~p~~v~ 264 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP-------RERQTFLFSATMTKKVRKLQRASLDNPVKVA 264 (476)
T ss_pred HHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC-------ccceEEEEEeecchhhHHHHhhccCCCeEEe
Confidence 22 5788888887766 3333333333333332 4566788888888889999888777777777
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCccchhhh-HHHHHHHHh--------hhCHHHHHHHHHHHcCCC---------CCCCC
Q 011149 215 PPVVEDVLESSAEQVVATLNGVHPESVEFF-TPTAQRLIE--------EKGTDALAAALAQLSGFS---------RPPSS 276 (492)
Q Consensus 215 ~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f-~~~a~~l~~--------~~~~~~l~~al~~~~~~~---------~~~~~ 276 (492)
.++.-..+....+.. .-+....-+.+ ....+++.. ........+.++..+|+. +..+.
T Consensus 265 ~s~ky~tv~~lkQ~y----lfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rl 340 (476)
T KOG0330|consen 265 VSSKYQTVDHLKQTY----LFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRL 340 (476)
T ss_pred ccchhcchHHhhhhe----EeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHH
Confidence 666444333222211 11111111111 011111111 112334455566655543 33344
Q ss_pred cccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeec
Q 011149 277 RSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL 340 (492)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv 340 (492)
.++..++.+.-.+++.+|. +.+|+|+..+..+||++.|...++ +||+......+...++|.-
T Consensus 341 g~l~~Fk~~~r~iLv~TDV--aSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtq 406 (476)
T KOG0330|consen 341 GALNKFKAGARSILVCTDV--ASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQ 406 (476)
T ss_pred HHHHHHhccCCcEEEecch--hcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEeh
Confidence 4566788888999999999 899999999999999999988776 7888888776655566644
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-07 Score=100.04 Aligned_cols=131 Identities=24% Similarity=0.356 Sum_probs=92.4
Q ss_pred CCCcEEEEeeeCChH-H-HHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeC
Q 011149 19 PKRQSMLFSATMPSW-V-KKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQ 96 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~-i-~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~ 96 (492)
+..+++..|||..+. . ..+.+..+... +- .......+|...|+.. .-.+.+..+++.+. .-.|||++
T Consensus 275 k~g~LvvsSATg~~rg~R~~LfReLlgFe----vG--~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG--~GgLIfV~ 343 (1187)
T COG1110 275 KLGILVVSSATGKPRGSRLKLFRELLGFE----VG--SGGEGLRNIVDIYVES---ESLEKVVELVKKLG--DGGLIFVP 343 (1187)
T ss_pred CCceEEEeeccCCCCCchHHHHHHHhCCc----cC--ccchhhhheeeeeccC---ccHHHHHHHHHHhC--CCeEEEEE
Confidence 457889999998432 2 23444444421 11 1223345565566555 33344455666663 46899999
Q ss_pred C---hHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEec----ccccccCCCCC-cCEEEecCCC
Q 011149 97 T---KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYELP 165 (492)
Q Consensus 97 t---~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT----~~~~~Gidi~~-v~~VI~~~~P 165 (492)
. ++.+++|++.|+. ++.+..+|+. ..+.++.|..|++++||.. .++.||||+|. +.++|.|+.|
T Consensus 344 ~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 344 IDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9 9999999999996 7999999984 3788999999999999875 48999999995 5678866655
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=95.38 Aligned_cols=255 Identities=13% Similarity=0.132 Sum_probs=161.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-------cccccCCCCCc
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------VAARGLDIPNV 156 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-------~~~~Gidi~~v 156 (492)
-++||.|||++.+-+++...++ .+.+...-|+|+-..++.+++. .-+|+|||+ --..+.|+.++
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchhHHHHhccCCCccccce
Confidence 4899999999999988876653 2667778899999999999988 778999998 23456777788
Q ss_pred CEEEecCCCCChhHHHH-HhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHhcc
Q 011149 157 DLIIHYELPNDPETFVH-RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 235 (492)
Q Consensus 157 ~~VI~~~~P~~~~~y~q-r~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ 235 (492)
.++|.-..-.=.+.|.+ ..--.-|.=.+-...+|++.+....++.|.+....++.++.+.+..+......+.++. +..
T Consensus 329 EVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiR-IR~ 407 (691)
T KOG0338|consen 329 EVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIR-IRP 407 (691)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHhe-ecc
Confidence 87775332221222211 1111111113446788999999899999988877777776555443332222222110 000
Q ss_pred CCccchhhhHH-------------------HHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCc
Q 011149 236 VHPESVEFFTP-------------------TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSA 296 (492)
Q Consensus 236 ~~~~~~~~f~~-------------------~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 296 (492)
..+.+.+.+.. .|.+|--=++.-.|.+.-+|.+ ++|..+..+|..++...+.+++++|.
T Consensus 408 ~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGs-LtQ~QRlesL~kFk~~eidvLiaTDv- 485 (691)
T KOG0338|consen 408 KREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGS-LTQEQRLESLEKFKKEEIDVLIATDV- 485 (691)
T ss_pred ccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhccc-ccHHHHHHHHHHHHhccCCEEEEech-
Confidence 00111111111 1111111122222333333433 56666777888899999999999999
Q ss_pred cccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeec-CHHHHHHHHhh
Q 011149 297 FSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL-PEEIAKELLNK 351 (492)
Q Consensus 297 ~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv-~~~~a~~~i~~ 351 (492)
+.+|+|+..|--+||+..|...+. +||+..+...+...++|-- .....+.++..
T Consensus 486 -AsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 486 -ASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred -hhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 899999999999999998876553 8999888877776777744 34445555544
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.8e-07 Score=101.44 Aligned_cols=119 Identities=20% Similarity=0.272 Sum_probs=81.4
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc---cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE--EEe
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL--IIH 161 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~--VI~ 161 (492)
..+++|||+++.+..+.++..|... .....+..+.. ..|.+++++|++++..||++|+.+.+|||+|+..+ ||.
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 3578999999999999999998741 12223333333 57899999999999999999999999999998774 555
Q ss_pred cCCCCC------------------------------hhHHHHHhhhcccCCCCCeEEEecChh--hHHHHHHHHHHh
Q 011149 162 YELPND------------------------------PETFVHRSGRTGRAGKEGTAILMFTSS--QRRTVRSLERDV 206 (492)
Q Consensus 162 ~~~P~~------------------------------~~~y~qr~GR~gR~g~~g~~i~l~~~~--e~~~~~~l~~~~ 206 (492)
..+|.. ...+.|.+||.=|....--++++++.. ...+-+.+.+.+
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhC
Confidence 565531 123478888988876443344444443 233334444433
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=3e-07 Score=100.70 Aligned_cols=167 Identities=19% Similarity=0.168 Sum_probs=113.6
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHH-HHHHHHHHHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~-~l~~ll~~~~~~~~~iVF~~t~~ 99 (492)
++..||.|.-.+-.++.+.|--+ ++.+. .+.+.....+ -.+......|.. ++..+...+..+.++||-|.+.+
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~l~--v~~iP---t~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~ 579 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYNLY--VLQVP---TFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVE 579 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC--EEECC---CCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHH
Confidence 56678888866656665555332 22221 1111111111 011222334544 44556666677889999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCC---cC-----EEEecCCCCChhH
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN---VD-----LIIHYELPNDPET 170 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~---v~-----~VI~~~~P~~~~~ 170 (492)
..+.++..|.+ +++..+|+..-...+-+.+-++=+ .-.|.|||+++.||.||.- |. |||....|.+..-
T Consensus 580 ~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~--~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Ri 657 (970)
T PRK12899 580 VSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGK--LGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRI 657 (970)
T ss_pred HHHHHHHHHHHcCCcceecccchhhhHHHHHHhcCC--CCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHH
Confidence 99999999985 788888888633333333333323 3459999999999999842 22 7999999999999
Q ss_pred HHHHhhhcccCCCCCeEEEecChhh
Q 011149 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 171 y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
-.|-.||+||.|.+|.+.+|++-.|
T Consensus 658 d~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 658 DRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred HHHHhcccccCCCCCceeEEEEcch
Confidence 9999999999999999999988655
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.4e-06 Score=86.35 Aligned_cols=182 Identities=15% Similarity=0.211 Sum_probs=135.0
Q ss_pred CcEEEEeeeCChHHHHHHHHHcCCCc-eEEeecccc-----cccccceEEEEEEcCccc-------HHHHH-HHHHHHHc
Q 011149 21 RQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQD-----EKLAEGIKLYAISTTATS-------KRTIL-SDLITVYA 86 (492)
Q Consensus 21 ~q~ll~SAT~p~~i~~~~~~~~~~~~-~i~~~~~~~-----~~~~~~i~~~~~~~~~~~-------k~~~l-~~ll~~~~ 86 (492)
+|+|+||+.+.+++..+..+++.|.. .+.+..... ......++|.+...+..+ +.+.. ..+|..+.
T Consensus 216 RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~ 295 (442)
T PF06862_consen 216 RQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK 295 (442)
T ss_pred eEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh
Confidence 69999999999999999998777643 344332222 234456667766544322 22211 12333332
Q ss_pred ---cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc--cccccCCCCCcCEEE
Q 011149 87 ---KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPNVDLII 160 (492)
Q Consensus 87 ---~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~--~~~~Gidi~~v~~VI 160 (492)
....+|||+++--+=..|...|++ .+....+|-..++.+-.++-..|.+|+.+||+-|. ..-+=..|..|.+||
T Consensus 296 ~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~vi 375 (442)
T PF06862_consen 296 RDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVI 375 (442)
T ss_pred hccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEE
Confidence 346899999999999999999985 78888899999999999999999999999999997 334456688899999
Q ss_pred ecCCCCChhHHHHHhhhcccCC------CCCeEEEecChhhHHHHHHH
Q 011149 161 HYELPNDPETFVHRSGRTGRAG------KEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~g------~~g~~i~l~~~~e~~~~~~l 202 (492)
.|.+|..+.-|-..+.-..... ....|.++++..|.-.++.|
T Consensus 376 FY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 376 FYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 9999999999988776544433 25789999999887666555
|
; GO: 0005634 nucleus |
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.9e-08 Score=98.69 Aligned_cols=253 Identities=16% Similarity=0.226 Sum_probs=151.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccccc-CCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G-idi~~v~ 157 (492)
..+||+.||++.|.++++.-++. +.+...+|+.+...+.+- -...++|||||+ ++++| |.++++.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~----~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRF----IKRGCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhh----hccCccEEEecCchhhhhhhcceeehhhCc
Confidence 57999999999999999988752 567778888544443333 334899999997 55665 7778888
Q ss_pred EEEe------cC---CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCC------ceecC--------
Q 011149 158 LIIH------YE---LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK------FEFVS-------- 214 (492)
Q Consensus 158 ~VI~------~~---~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~------~~~~~-------- 214 (492)
++|. .| +-. ..-|-+.+.+-.-..-...+|++++-...++.+...+..+ +..+.
T Consensus 229 ~~vLDEADrMlD~mgF~p---~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q 305 (482)
T KOG0335|consen 229 FLVLDEADRMLDEMGFEP---QIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQ 305 (482)
T ss_pred EEEecchHHhhhhccccc---cHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecccccccee
Confidence 7662 22 111 3344555554443455677787776665555554444332 11111
Q ss_pred -CCCHHHHHHHHHHHHHHHhccCC--ccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCC---------CCCCCcccccC
Q 011149 215 -PPVVEDVLESSAEQVVATLNGVH--PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS---------RPPSSRSLINH 282 (492)
Q Consensus 215 -~p~~~~~~~~~~~~~~~~l~~~~--~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~---------~~~~~~~l~~~ 282 (492)
++...+ ..+...+++.|.... +..-+.+.+..--+++........++++...+++ +..+.+.|..+
T Consensus 306 ~i~~V~~--~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~F 383 (482)
T KOG0335|consen 306 KILFVNE--MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDF 383 (482)
T ss_pred Eeeeecc--hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHh
Confidence 010011 122223333333211 1111111111101123333333344444444432 22233456677
Q ss_pred CCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEee-cCHHHHHHHHhhc
Q 011149 283 EQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFD-LPEEIAKELLNKQ 352 (492)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fd-v~~~~a~~~i~~~ 352 (492)
+.+...++|++.. +++|+|+..|.|+|+++.|...++ |||+....+.+.+.+||| ...+.++.+.+..
T Consensus 384 r~g~~pvlVaT~V--aaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l 456 (482)
T KOG0335|consen 384 RNGKAPVLVATNV--AARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEIL 456 (482)
T ss_pred hcCCcceEEEehh--hhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHH
Confidence 8888899999998 799999999999999999987655 999999988888889998 4455666665543
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.4e-07 Score=94.01 Aligned_cols=137 Identities=20% Similarity=0.337 Sum_probs=112.6
Q ss_pred cccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCC---eEEEEecc
Q 011149 71 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~---~~iLVaT~ 145 (492)
...|+.+|..||..+ ..+.+||||..-....+.|..++. +.|..+-|.|.++.++|...++.|.... +-.|++|-
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 446888888888766 456799999998888888888876 5788999999999999999999998643 55789999
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCe--EEEecChh--hHHHHHHHHHHhC
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTSS--QRRTVRSLERDVG 207 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~--~i~l~~~~--e~~~~~~l~~~~~ 207 (492)
+...|||+...++||.||--|+|..=+|..-|+.|.|.+.. ++-|++.. |...+++-+..+.
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~ 614 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLR 614 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999996654 44556654 4455555555443
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.8e-06 Score=95.00 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=114.3
Q ss_pred EEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHH-HHHHHHHHHccCCeEEEEeCChHH
Q 011149 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (492)
Q Consensus 23 ~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~-~l~~ll~~~~~~~~~iVF~~t~~~ 100 (492)
+-.||.|...+-.++.+-|--+. |.+. .+.+...+.+ -.+......|.. ++..+...+..+.|+||-|.|.+.
T Consensus 566 LsGMTGTA~tea~Ef~~IY~L~V--v~IP---TnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~ 640 (1112)
T PRK12901 566 LAGMTGTAETEAGEFWDIYKLDV--VVIP---TNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEI 640 (1112)
T ss_pred hcccCCCCHHHHHHHHHHhCCCE--EECC---CCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHH
Confidence 44578887666666655553332 2221 1111111111 111222334544 445566666778899999999999
Q ss_pred HHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC---Cc-----CEEEecCCCCChhHH
Q 011149 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NV-----DLIIHYELPNDPETF 171 (492)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~---~v-----~~VI~~~~P~~~~~y 171 (492)
.+.|+..|.. +++..+|+......+-+.+-++=+.| .|-|||++|.||.||. .| =|||-...|.|..--
T Consensus 641 SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID 718 (1112)
T PRK12901 641 SELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVD 718 (1112)
T ss_pred HHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHH
Confidence 9999999985 78888888775555544444443433 4899999999999995 22 378999999999999
Q ss_pred HHHhhhcccCCCCCeEEEecChhh
Q 011149 172 VHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 172 ~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
-|-.||+||.|.+|.+..|++-.|
T Consensus 719 ~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 719 RQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred HHHhcccccCCCCCcceEEEEccc
Confidence 999999999999999988887654
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-06 Score=96.03 Aligned_cols=168 Identities=20% Similarity=0.186 Sum_probs=113.4
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHH-HHHHHHHccCCeEEEEeCChHH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKRD 100 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l-~~ll~~~~~~~~~iVF~~t~~~ 100 (492)
++-.||.|...+...+.+-|--+.+.| . ...........-.. ......|..++ ..+...+..+.|+||-|.|.+.
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~l~Vv~I--P-TnkP~~R~D~~d~v-y~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYGLDVVVI--P-PNKPLARKDFNDLV-YLTAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhCCCEEEC--C-CCCCcccccCCCeE-EcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 455688888766666666554332222 1 11111111111122 22334555444 4555556678899999999999
Q ss_pred HHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC-------------------------
Q 011149 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------------------------- 154 (492)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~------------------------- 154 (492)
.+.|+..|.+ +++..+|+..-...+-+.+-++=+ .-.|.|||++|.||.||.
T Consensus 462 SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 462 SEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 9999999985 788877877644444343433323 335999999999999994
Q ss_pred -------Cc-----CEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 155 -------NV-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 155 -------~v-----~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
.| =|||-...|.|..-=-|-.||+||.|.+|.+.+|++-.|
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 12 178888999999999999999999999999999887654
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.2e-08 Score=106.44 Aligned_cols=241 Identities=17% Similarity=0.178 Sum_probs=135.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccc-cCCCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~-Gidi~~ 155 (492)
..++||.|||++.|.++++.+.. .+.+..+||+.+...+...++. ..+|||+|+ .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~----~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ----GPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcchhh
Confidence 35899999999999999888763 3567889999887766655543 578999996 3333 478888
Q ss_pred cCEEEecC----CCC----ChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHH----HH--
Q 011149 156 VDLIIHYE----LPN----DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE----DV-- 221 (492)
Q Consensus 156 v~~VI~~~----~P~----~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~----~~-- 221 (492)
+.+||.=. +.. ++..++..+ .....+++++.+-...+..+.+.+......+.+.... .+
T Consensus 150 l~~lVlDEAd~ml~~gf~~di~~Il~~l-------p~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q 222 (629)
T PRK11634 150 LSGLVLDEADEMLRMGFIEDVETIMAQI-------PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQ 222 (629)
T ss_pred ceEEEeccHHHHhhcccHHHHHHHHHhC-------CCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEE
Confidence 88887311 111 122222221 2334567777665555666665554443332221110 00
Q ss_pred ------HHHHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEe
Q 011149 222 ------LESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292 (492)
Q Consensus 222 ------~~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 292 (492)
.....+.+...+..........|..+ ++++.+.+....+.+..+|.. +++..+.+.+..++.+...++|+
T Consensus 223 ~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd-~~q~~R~~il~~Fr~G~~~ILVA 301 (629)
T PRK11634 223 SYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD-MNQALREQTLERLKDGRLDILIA 301 (629)
T ss_pred EEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCC-CCHHHHHHHHHHHhCCCCCEEEE
Confidence 01122333333333222223333222 222222221111111111110 22222233345567788899999
Q ss_pred ecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCH
Q 011149 293 RDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPE 342 (492)
Q Consensus 293 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~ 342 (492)
++. +.+|+|+.+|..+|+++.|...+. +||.......+.+.+|++-++
T Consensus 302 Tdv--~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 302 TDV--AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred cch--HhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHH
Confidence 998 789999999999999988876554 788877766555556665433
|
|
| >PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-07 Score=73.41 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=49.1
Q ss_pred EEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeecCccceeEeecCHHHHHHHHhhcCC
Q 011149 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (492)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~~~~ 354 (492)
++++++.|+ +++++|++|+++|+...++..++||+|.+.+++ |||+||++.++++++.+..
T Consensus 1 vrl~in~Gr---~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~----S~vev~~~~a~~v~~~l~~ 61 (74)
T PF03880_consen 1 VRLFINVGR---KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNF----SFVEVPEEVAEKVLEALNG 61 (74)
T ss_dssp -EEEES-SG---GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT-HHHHHHHHTT
T ss_pred CEEEEEccc---ccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeE----EEEEECHHHHHHHHHHhcC
Confidence 589999998 899999999999999999999999999999998 8999999999999998764
|
; PDB: 2G0C_A 3MOJ_B. |
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-07 Score=99.77 Aligned_cols=255 Identities=13% Similarity=0.142 Sum_probs=140.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccc-ccCCCCCc
Q 011149 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPNV 156 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~-~Gidi~~v 156 (492)
.++||.|||++.|.++++.++. .+.+..++|+.+...+...++ ...+|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 3799999999999999987763 356788999998877766555 3678999996 232 45788899
Q ss_pred CEEEecCCC--CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHH-----------HHH
Q 011149 157 DLIIHYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED-----------VLE 223 (492)
Q Consensus 157 ~~VI~~~~P--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~-----------~~~ 223 (492)
.+||.=+.- .+ ..|...+-+.-+.-.....+++++.+-...+..+.+.+...+..+.+..... -..
T Consensus 149 ~~lViDEad~~l~-~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~ 227 (460)
T PRK11776 149 NTLVLDEADRMLD-MGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPD 227 (460)
T ss_pred CEEEEECHHHHhC-cCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcH
Confidence 988842211 00 0111111111111123345666666655555555555433322221111000 001
Q ss_pred HHHHHHHHHhccCCccchhhhHH---HHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCccccC
Q 011149 224 SSAEQVVATLNGVHPESVEFFTP---TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300 (492)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~f~~---~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 300 (492)
.....+...+....+.....|.. .++.+.+.+....+.+...|. ++++..+...+..++.+...++|+++. +.+
T Consensus 228 ~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg-~~~~~eR~~~l~~F~~g~~~vLVaTdv--~~r 304 (460)
T PRK11776 228 ERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHG-DLEQRDRDQVLVRFANRSCSVLVATDV--AAR 304 (460)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeC-CCCHHHHHHHHHHHHcCCCcEEEEecc--ccc
Confidence 12223333333333332233322 233333222111111111111 122222333455677888999999998 789
Q ss_pred CCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHHHHHHHHhh
Q 011149 301 FMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNK 351 (492)
Q Consensus 301 ~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~ 351 (492)
|+|..++..+|+++.|...+. +||..+....+...+++...+......++.
T Consensus 305 GiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~ 359 (460)
T PRK11776 305 GLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIED 359 (460)
T ss_pred ccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHH
Confidence 999999999999988865543 788888766655556666554443333433
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.2e-07 Score=97.92 Aligned_cols=121 Identities=20% Similarity=0.384 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHcc-CCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcC---CCeEEEEeccccc
Q 011149 74 KRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAA 148 (492)
Q Consensus 74 k~~~l~~ll~~~~~-~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~---g~~~iLVaT~~~~ 148 (492)
|+.+|..||..+.. +.+||||.......+.|+++|. +.|+..-|-|.+.-+.|+++++.|.. ..+..|+||-+..
T Consensus 684 KlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGG 763 (1373)
T KOG0384|consen 684 KLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGG 763 (1373)
T ss_pred cEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCc
Confidence 44455666666644 4799999999999999999998 48999999999999999999999975 4678999999999
Q ss_pred ccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCC--eEEEecChh
Q 011149 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG--TAILMFTSS 194 (492)
Q Consensus 149 ~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g--~~i~l~~~~ 194 (492)
.|||+-..+.||.||--|+|..=+|.--||.|.|.+. .+|-|++..
T Consensus 764 LGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 764 LGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred ccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 9999999999999999999999999999999999654 566777764
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.9e-06 Score=91.68 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=90.4
Q ss_pred ccHHHHHHHHHHHHcc--CCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCC---eEEEEecc
Q 011149 72 TSKRTILSDLITVYAK--GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~~--~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~---~~iLVaT~ 145 (492)
..|+..|..++..... ..++.+..|.+...+.+.+..+ .++.+..|||.|+..+|+.+++.|.+-. .-.|.+|.
T Consensus 577 s~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsK 656 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSK 656 (776)
T ss_pred hhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecc
Confidence 3456666666644321 1233333444444444444444 3788999999999999999999998743 33677889
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEe
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (492)
+.+.||++-..+.||.||++|+|+.=.|.+.|+-|.|++-.|+++
T Consensus 657 Agg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 657 AGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred cccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999999999999999999999999988777765
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.6e-07 Score=94.81 Aligned_cols=245 Identities=13% Similarity=0.137 Sum_probs=132.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v~ 157 (492)
.++||.+||++.|.++++.+.. .+.+..++|+.+...+..++.. ..+|||+|+ +....+++.+++
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~Tp~rl~~~~~~~~~~~~~v~ 149 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE----NQDIVVATPGRLLQYIKEENFDCRAVE 149 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcC----CCCEEEEChHHHHHHHHcCCcCcccCC
Confidence 5799999999999998876653 3678899999988877766643 678999997 223456788888
Q ss_pred EEEecC----CCCChhHHHHHhhhcccCCCCCeEEEecChhh-HHHHHHHHHHhCCCceecCCCCHH-H-----------
Q 011149 158 LIIHYE----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVE-D----------- 220 (492)
Q Consensus 158 ~VI~~~----~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p~~~-~----------- 220 (492)
+||.=+ +.......+.++-..-+ ....+++++.+- ...+..+.+.+...+..+...... .
T Consensus 150 ~lViDEah~~l~~~~~~~~~~i~~~~~---~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~ 226 (434)
T PRK11192 150 TLILDEADRMLDMGFAQDIETIAAETR---WRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRA 226 (434)
T ss_pred EEEEECHHHHhCCCcHHHHHHHHHhCc---cccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEe
Confidence 887422 22222233333322212 223445555432 234555555544333222111100 0
Q ss_pred -HHHHHHHHHHHHhccCCccchhhhHH---HHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCc
Q 011149 221 -VLESSAEQVVATLNGVHPESVEFFTP---TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSA 296 (492)
Q Consensus 221 -~~~~~~~~~~~~l~~~~~~~~~~f~~---~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 296 (492)
..+.....+...+..........|.. .++.+.+.+....+.+.++|. ++++..+...+..++.|.+.++|+++.
T Consensus 227 ~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g-~~~~~~R~~~l~~f~~G~~~vLVaTd~- 304 (434)
T PRK11192 227 DDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEG-EMVQAKRNEAIKRLTDGRVNVLVATDV- 304 (434)
T ss_pred CCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecC-CCCHHHHHHHHHHHhCCCCcEEEEccc-
Confidence 01122222223332222222222322 222332222111111111111 122222233445677889999999997
Q ss_pred cccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH
Q 011149 297 FSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE 343 (492)
Q Consensus 297 ~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~ 343 (492)
+.+|+|..++..+|+++.|...+. +||..+....+.+.++++..+.
T Consensus 305 -~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~ 354 (434)
T PRK11192 305 -AARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDH 354 (434)
T ss_pred -cccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHH
Confidence 688999999999999888765543 7888876555444566655433
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-05 Score=86.13 Aligned_cols=126 Identities=18% Similarity=0.161 Sum_probs=78.5
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEE-EEEcCcccHHH-HHHHHHHHHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~-~l~~ll~~~~~~~~~iVF~~t~~ 99 (492)
.+..||.|.-.+-..+.+.|--+. +.+ +.+.+...+.+- .+......|.. ++..+...+..+.|+||-|.|.+
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~l~v--v~I---Ptnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe 435 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYNLEV--VCI---PTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIE 435 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCE--EEC---CCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHH
Confidence 456788888666556655553322 222 122222222111 12223334544 45556666777889999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCC--HHHHHHHHhhhcCCCeEEEEecccccccCCCC
Q 011149 100 DADEVSLALTS-IIASEALHGDIS--QHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~--~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~ 154 (492)
..+.|+..|.. +++..+|+..-. ..+-+.+-++=+ .-.|.|||++|.||.||.
T Consensus 436 ~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~--~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 436 KSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGR--KGSITIATNMAGRGTDII 491 (870)
T ss_pred HHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCC--CCcEEEeccccCCCcCee
Confidence 99999999985 888889988632 333333333322 345999999999999983
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=9e-07 Score=92.28 Aligned_cols=241 Identities=12% Similarity=0.132 Sum_probs=126.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc------ccccCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidi~~v~ 157 (492)
.++||.+||++.|.++++.+.. .+.+..++|+.+...+...++. ..+|||+|+- -..-+++.++.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLES----GVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCccccccc
Confidence 4799999999999999876653 3678888998876665554432 5789999982 23457788888
Q ss_pred EEEecCC--------CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHH----H-----
Q 011149 158 LIIHYEL--------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE----D----- 220 (492)
Q Consensus 158 ~VI~~~~--------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~----~----- 220 (492)
+||.=.. -.+...+.+.+.. ......++++.+-...+..+.......+..+.+.... .
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~-----~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~ 234 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPP-----ANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEEL 234 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCC-----ccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEE
Confidence 8884221 1122222222211 1123344555544333444333222222111111000 0
Q ss_pred ---HHHHHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeec
Q 011149 221 ---VLESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294 (492)
Q Consensus 221 ---~~~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 294 (492)
........+...+..........|..+ ++.+.+.+....+..+..|.. +++..+...+..++.+.+.++++++
T Consensus 235 ~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~-~~~~~R~~~l~~F~~g~~~vLVaTd 313 (423)
T PRK04837 235 FYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGD-VAQKKRLRILEEFTRGDLDILVATD 313 (423)
T ss_pred EeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCC-CChhHHHHHHHHHHcCCCcEEEEec
Confidence 001112222222222222222233222 222222221111111111111 2222223344567788899999999
Q ss_pred CccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecC
Q 011149 295 SAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP 341 (492)
Q Consensus 295 ~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~ 341 (492)
. +.+|+|..+|..+|+++.|...++ +||..+....+.+.+|+.-.
T Consensus 314 v--~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~ 362 (423)
T PRK04837 314 V--AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE 362 (423)
T ss_pred h--hhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHH
Confidence 8 789999999999999998876655 78888876655444555443
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.4e-07 Score=90.36 Aligned_cols=242 Identities=17% Similarity=0.209 Sum_probs=149.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----c-cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~-~~Gidi~~v 156 (492)
+..+||..+|++.+++|.+.-.+ ++.++.+-|+++.+++---+.. .+.|+|||+- + -+-+=+..+
T Consensus 322 gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~----gceiviatPgrLid~Lenr~lvl~qc 397 (673)
T KOG0333|consen 322 GPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM----GCEIVIATPGRLIDSLENRYLVLNQC 397 (673)
T ss_pred CceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc----cceeeecCchHHHHHHHHHHHHhccC
Confidence 56899999999999999876553 4678888999988876444444 6789999981 1 122223456
Q ss_pred CEEEe------cC-------------CCCChhH-------HHHHhhhccc-CCCCCeEEEecChhhHHHHHHHHHHhCCC
Q 011149 157 DLIIH------YE-------------LPNDPET-------FVHRSGRTGR-AGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (492)
Q Consensus 157 ~~VI~------~~-------------~P~~~~~-------y~qr~GR~gR-~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (492)
.+||. .| +|.+... =.-++ |..= ..+.=...++++.+....+..|.+.+...
T Consensus 398 tyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~-~~~~~~~k~yrqT~mftatm~p~verlar~ylr~ 476 (673)
T KOG0333|consen 398 TYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERV-RKNFSSSKKYRQTVMFTATMPPAVERLARSYLRR 476 (673)
T ss_pred ceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHH-HhhcccccceeEEEEEecCCChHHHHHHHHHhhC
Confidence 66661 12 2221111 01110 1110 01222466778888888888998888776
Q ss_pred ceecCCCCH---HHHH---------HHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc--------C
Q 011149 210 FEFVSPPVV---EDVL---------ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS--------G 269 (492)
Q Consensus 210 ~~~~~~p~~---~~~~---------~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~--------~ 269 (492)
+.++.+-+. .+.+ ......+++.|......-+..|..+ ..+.++|+..|-++. +
T Consensus 477 pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~------kk~~d~lAk~LeK~g~~~~tlHg~ 550 (673)
T KOG0333|consen 477 PVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNT------KKGADALAKILEKAGYKVTTLHGG 550 (673)
T ss_pred CeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEec------hhhHHHHHHHHhhccceEEEeeCC
Confidence 655433221 1111 1223344444444322222222221 112234444443332 1
Q ss_pred CCCCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCH
Q 011149 270 FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPE 342 (492)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~ 342 (492)
.+|..+..+|..++++-..++|+++. +.+|+|+.+|.++|+++.....++ |||+..+...+.+.||+....
T Consensus 551 k~qeQRe~aL~~fr~~t~dIlVaTDv--AgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 551 KSQEQRENALADFREGTGDILVATDV--AGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEecc--cccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccch
Confidence 44555667788888889999999998 899999999999999998766665 999999999888888887765
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.4e-06 Score=89.52 Aligned_cols=122 Identities=19% Similarity=0.357 Sum_probs=105.3
Q ss_pred ccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHH--cccceeeecCCCCHHHHHHHHhhhcCCC-eE-EEEeccc
Q 011149 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGK-FT-VLVATDV 146 (492)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~--~~~~~~~lhg~~~~~~r~~~~~~F~~g~-~~-iLVaT~~ 146 (492)
.-|..++..+|... ..+.++|+|..|+...+.|...|. +.|...-+.|..+...|..++++|.++. +. .|++|.|
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrv 608 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRV 608 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecc
Confidence 45788888888665 456799999999999999999998 4899999999999999999999999764 33 5789999
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEE--EecCh
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAI--LMFTS 193 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i--~l~~~ 193 (492)
...|+|+...+-||.|||-|+|..=.|..-|+-|.|.+-.++ -|++.
T Consensus 609 GGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 609 GGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred cccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 999999999999999999999999999999999999665444 44543
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-06 Score=89.10 Aligned_cols=244 Identities=14% Similarity=0.176 Sum_probs=135.9
Q ss_pred EEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccccc-C---CCCCc
Q 011149 91 TIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-L---DIPNV 156 (492)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G-i---di~~v 156 (492)
.|||+||++.|.++.+.|.. .+.+..|.|+|....+++++++ .-+|+|||+ +...+ . ++.+|
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 89999999999999999873 4789999999999999999988 567999999 22221 1 35666
Q ss_pred CEEEecCCC-----CChhHHHHHhhhcc-cCCCCCeEEEecChh------------------h---HHHHHHHHHHhCC-
Q 011149 157 DLIIHYELP-----NDPETFVHRSGRTG-RAGKEGTAILMFTSS------------------Q---RRTVRSLERDVGC- 208 (492)
Q Consensus 157 ~~VI~~~~P-----~~~~~y~qr~GR~g-R~g~~g~~i~l~~~~------------------e---~~~~~~l~~~~~~- 208 (492)
.++|.-..- ...+.+.|-+--.+ +.-+.....++|+.+ + ...++.|.+.++.
T Consensus 342 kcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~ 421 (731)
T KOG0347|consen 342 KCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFR 421 (731)
T ss_pred eEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCcc
Confidence 665532111 11223333222222 222222333333221 0 1123333343333
Q ss_pred -CceecCCCCHHHHHHHHHHHHHHHhc-----------cCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCC
Q 011149 209 -KFEFVSPPVVEDVLESSAEQVVATLN-----------GVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRP 273 (492)
Q Consensus 209 -~~~~~~~p~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~ 273 (492)
++..+.+.+.........+..++--. ...+.....|... +++|.--+..-.+...-+|.. +.|.
T Consensus 422 ~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~-M~QK 500 (731)
T KOG0347|consen 422 GKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHAS-MIQK 500 (731)
T ss_pred CCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHH-HHHH
Confidence 22334444444444433333332200 0001111111111 222221111111111222222 3344
Q ss_pred CCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecC
Q 011149 274 PSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP 341 (492)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~ 341 (492)
.+.++|..++..-..+++++|. |++|+|+..|-|+|++..|-..+- -||+.++.+.+....+++.+
T Consensus 501 qRLknLEkF~~~~~~VLiaTDV--AARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~ 570 (731)
T KOG0347|consen 501 QRLKNLEKFKQSPSGVLIATDV--AARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQ 570 (731)
T ss_pred HHHHhHHHHhcCCCeEEEeehh--hhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChH
Confidence 4566778888888999999999 899999999999999999876654 69999998887533444433
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.2e-06 Score=89.73 Aligned_cols=122 Identities=21% Similarity=0.346 Sum_probs=100.7
Q ss_pred ccHHHHHHHHHHHHc---------------cCCeEEEEeCChHHHHHHHHHHHc-cc-c--eeeecCCCCHHHHHHHHhh
Q 011149 72 TSKRTILSDLITVYA---------------KGGKTIVFTQTKRDADEVSLALTS-II-A--SEALHGDISQHQRERTLNG 132 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~---------------~~~~~iVF~~t~~~~~~l~~~l~~-~~-~--~~~lhg~~~~~~r~~~~~~ 132 (492)
.-|+.+|.+||..-. ...++||||.-+...+.+...|.+ .+ . ...|.|.+++.+|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 357778888776532 235899999999999999988875 32 2 3468999999999999999
Q ss_pred hcCC-CeEEE-EecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCe--EEEecCh
Q 011149 133 FRQG-KFTVL-VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTS 193 (492)
Q Consensus 133 F~~g-~~~iL-VaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~--~i~l~~~ 193 (492)
|.++ .++|| ++|-|..-|+|+...+.||.++--|+|..=+|..-||.|.|++-+ +|-|++.
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1453 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhc
Confidence 9998 78876 577899999999999999999999999999999999999997654 4444543
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.3e-05 Score=87.94 Aligned_cols=80 Identities=21% Similarity=0.252 Sum_probs=61.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcccc---eeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCc--CEEEe
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSIIA---SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV--DLIIH 161 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~---~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v--~~VI~ 161 (492)
.++++|||+++.+..+.+++.|..... ...+.=+++...|.+++++|++++-.||++|..+.+|||+|+- .+||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999975321 2222223444568899999998888899999999999999964 67876
Q ss_pred cCCCC
Q 011149 162 YELPN 166 (492)
Q Consensus 162 ~~~P~ 166 (492)
..+|.
T Consensus 831 ~kLPF 835 (928)
T PRK08074 831 VRLPF 835 (928)
T ss_pred ecCCC
Confidence 66553
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-05 Score=87.16 Aligned_cols=124 Identities=19% Similarity=0.316 Sum_probs=101.0
Q ss_pred cccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCC--eEEEEeccc
Q 011149 71 ATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDV 146 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~--~~iLVaT~~ 146 (492)
...|++.|.-||..+. .+.++|||+...+..+-|..+|.- ++...-|.|...-++|+..+++|.... +..|++|-.
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 3467887777776663 467999999999999999999984 677888999999999999999998753 567889999
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCC--CeEEEecChh
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE--GTAILMFTSS 194 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~--g~~i~l~~~~ 194 (492)
-..|||+-..+.||.||--|++..--|.--|+.|.|++ -+.|-|++..
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 99999999999999999999987777666666666643 4566667654
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.7e-07 Score=94.71 Aligned_cols=254 Identities=15% Similarity=0.166 Sum_probs=133.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccc-cCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~-Gidi~~v~ 157 (492)
..+||.+||++.|.++.+.+.. .+.+..++|+.+...+...+.. ..+|||+|+ .+.. -+++..++
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~----~~~IlVaTPgrL~d~l~~~~~~l~~v~ 279 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRR----GVEILIACPGRLIDFLESNVTNLRRVT 279 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHc----CCCEEEECHHHHHHHHHcCCCChhhCc
Confidence 4689999999999999888874 2567788998887665555443 478999997 3333 36778888
Q ss_pred EEEecCCC--CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCC-Cceec-----CCCCH-----------
Q 011149 158 LIIHYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC-KFEFV-----SPPVV----------- 218 (492)
Q Consensus 158 ~VI~~~~P--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~-~~~~~-----~~p~~----------- 218 (492)
+||.=..- .+ ..|...+-+.-..-++...+++++.+-...++.+.+.+.. ....+ .+...
T Consensus 280 ~lViDEAd~mld-~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~ 358 (545)
T PTZ00110 280 YLVLDEADRMLD-MGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE 358 (545)
T ss_pred EEEeehHHhhhh-cchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe
Confidence 87732111 00 0121111111111123345666655533334444333221 11111 10000
Q ss_pred HHHHHHHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecC
Q 011149 219 EDVLESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDS 295 (492)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 295 (492)
+......+..++..+.. ....+..|..+ ++.+...+....+.+...|. ++++..+...+..++.+.+.++|+++.
T Consensus 359 ~~~k~~~L~~ll~~~~~-~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg-~~~~~eR~~il~~F~~G~~~ILVaTdv 436 (545)
T PTZ00110 359 EHEKRGKLKMLLQRIMR-DGDKILIFVETKKGADFLTKELRLDGWPALCIHG-DKKQEERTWVLNEFKTGKSPIMIATDV 436 (545)
T ss_pred chhHHHHHHHHHHHhcc-cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEEC-CCcHHHHHHHHHHHhcCCCcEEEEcch
Confidence 00011122222222221 11222233222 22222221111111100010 112222223345667788899999997
Q ss_pred ccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH-HHHHHHhh
Q 011149 296 AFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE-IAKELLNK 351 (492)
Q Consensus 296 ~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~-~a~~~i~~ 351 (492)
+.+|+|+.+|..+|+++.|...++ |||+.+....+...+||+..+. .+.++++.
T Consensus 437 --~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~ 495 (545)
T PTZ00110 437 --ASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKV 495 (545)
T ss_pred --hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHH
Confidence 789999999999999998876654 8888887766666778776533 34455444
|
|
| >PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.2e-06 Score=74.70 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 415 FRSSRSWGSDDEDGFSSSRGGRS-FRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 415 ~~~~~~~g~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
...|++|+++||.+++|+..... ....|+.|+. .+|++..-.. .. ..+....||+|++.||+++|||+
T Consensus 27 ~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~Cg~-----~GH~~~~Cp~---~~--~~~~~~~C~~Cg~~GH~~~~C~~ 95 (148)
T PTZ00368 27 ARPCYKCGEPGHLSRECPSAPGGRGERSCYNCGK-----TGHLSRECPE---AP--PGSGPRSCYNCGQTGHISRECPN 95 (148)
T ss_pred CccCccCCCCCcCcccCcCCCCCCCCcccCCCCC-----cCcCcccCCC---cc--cCCCCcccCcCCCCCcccccCCC
Confidence 46799999999999999876422 2356788884 4454221100 00 01123469999999999999985
|
|
| >PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.2e-06 Score=72.88 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=46.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 415 FRSSRSWGSDDEDGFSSSRGGRS-FRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 415 ~~~~~~~g~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
...|++|++.||.+++|+..... ....|++|+. .+|++..-... . .+++....||+|++.||+++|||+
T Consensus 52 ~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~Cg~-----~GH~~~~C~~~---~-~~~~~~~~C~~Cg~~gH~~~~C~~ 121 (148)
T PTZ00368 52 ERSCYNCGKTGHLSRECPEAPPGSGPRSCYNCGQ-----TGHISRECPNR---A-KGGAARRACYNCGGEGHISRDCPN 121 (148)
T ss_pred CcccCCCCCcCcCcccCCCcccCCCCcccCcCCC-----CCcccccCCCc---c-cccccchhhcccCcCCcchhcCCC
Confidence 35799999999999999876332 2356888884 44542211110 0 012233469999999999999995
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1e-05 Score=87.54 Aligned_cols=91 Identities=27% Similarity=0.444 Sum_probs=74.3
Q ss_pred eeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecC-CCCChhHHHHHhhhcccCC--CCCeEEEe
Q 011149 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-LPNDPETFVHRSGRTGRAG--KEGTAILM 190 (492)
Q Consensus 114 ~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~-~P~~~~~y~qr~GR~gR~g--~~g~~i~l 190 (492)
+.++|++|...+|..+.--||.|...||+||..++.|||.|.-++|+--| +--++-.|.|++||+||.| ..|.++.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 45679999999999999999999999999999999999999877777555 4567889999999999988 56787777
Q ss_pred cChhhHHHHHHHHHHh
Q 011149 191 FTSSQRRTVRSLERDV 206 (492)
Q Consensus 191 ~~~~e~~~~~~l~~~~ 206 (492)
=-|.. .+++|....
T Consensus 1045 giP~~--kv~rLlts~ 1058 (1330)
T KOG0949|consen 1045 GIPRQ--KVQRLLTSL 1058 (1330)
T ss_pred eCcHH--HHHHHHHHh
Confidence 66643 344444433
|
|
| >COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-06 Score=77.32 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=37.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCC-C
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTS-SDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASEC-P 491 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~c-p 491 (492)
..|++||+.||..++|| . .=|+.|.-.++. ...-| .-.||+||+.||+++|| |
T Consensus 61 ~~C~nCg~~GH~~~DCP-~-----~iC~~C~~~~H~s~~C~~-----------------~~~C~~Cg~~GH~~~dC~P 115 (190)
T COG5082 61 PVCFNCGQNGHLRRDCP-H-----SICYNCSWDGHRSNHCPK-----------------PKKCYNCGETGHLSRDCNP 115 (190)
T ss_pred cccchhcccCcccccCC-h-----hHhhhcCCCCcccccCCc-----------------ccccccccccCccccccCc
Confidence 67999999999999999 3 556666322222 12223 13489999999999999 5
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00015 Score=79.45 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=77.4
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEE-EEEcCcccHHHH-HHHHHHHHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~-l~~ll~~~~~~~~~iVF~~t~~ 99 (492)
++..||.|.-.+-.++.+-|--+. +.+. .+.+...+.+- .+......|... +..+...+..+.|+||-|.|.+
T Consensus 376 kLsGMTGTa~te~~Ef~~iY~l~V--v~IP---TnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe 450 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTYKLEV--TVIP---TNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVE 450 (939)
T ss_pred hhcccCCCCHHHHHHHHHHhCCcE--EEcC---CCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHH
Confidence 455688887666666665553332 2221 11211111111 112223355544 4455666677889999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCC-C-HHHHHHHHhhhcCCCeEEEEecccccccCCCC
Q 011149 100 DADEVSLALTS-IIASEALHGDI-S-QHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~-~-~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~ 154 (492)
..+.|+..|.. +++..+|+..- . ..+-+.+-++=+ .-.|-|||++|.||.||.
T Consensus 451 ~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 451 KSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGR--KGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCC--CCcEEEeccCCCCCcCEe
Confidence 99999999986 78888888862 2 223333333323 335899999999999984
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.5e-05 Score=80.48 Aligned_cols=102 Identities=19% Similarity=0.371 Sum_probs=88.8
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCC-CeEE-EEecccccccCCCCCcCEEEecC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTV-LVATDVAARGLDIPNVDLIIHYE 163 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~i-LVaT~~~~~Gidi~~v~~VI~~~ 163 (492)
+..+.+|||......+.|...+.+ .+...-+.|..+...|+...+.|... ++.| +++-.++..||++...+.||...
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaE 570 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAE 570 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEE
Confidence 457999999999999999999985 78999999999999999999999864 4554 45567889999999999999999
Q ss_pred CCCChhHHHHHhhhcccCCCCCeEE
Q 011149 164 LPNDPETFVHRSGRTGRAGKEGTAI 188 (492)
Q Consensus 164 ~P~~~~~y~qr~GR~gR~g~~g~~i 188 (492)
+||++.-++|.--|+.|.|.+..+.
T Consensus 571 L~wnPgvLlQAEDRaHRiGQkssV~ 595 (689)
T KOG1000|consen 571 LHWNPGVLLQAEDRAHRIGQKSSVF 595 (689)
T ss_pred ecCCCceEEechhhhhhccccceee
Confidence 9999999999999999988665433
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.7e-05 Score=85.27 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=57.8
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHcc-cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC--CcCEEEec
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--NVDLIIHY 162 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~~-~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~--~v~~VI~~ 162 (492)
..++++||++++.+..+.+++.|... +.+ ...|.-. .+.+++++|++++-.||++|..+.+|||+| +...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 34689999999999999999998742 333 3344211 246689999998888999999999999997 34555655
Q ss_pred CCC
Q 011149 163 ELP 165 (492)
Q Consensus 163 ~~P 165 (492)
.+|
T Consensus 722 kLP 724 (820)
T PRK07246 722 RLP 724 (820)
T ss_pred cCC
Confidence 554
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.5e-05 Score=80.06 Aligned_cols=244 Identities=16% Similarity=0.191 Sum_probs=147.3
Q ss_pred eEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cc---cccCCCCC
Q 011149 90 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA---ARGLDIPN 155 (492)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~---~~Gidi~~ 155 (492)
-+||..||++.|.+|.+.+.. .+.+..+-|+.+.+ +-++.|++...+|||+|+ ++ +..+|+.+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 479999999999998877653 35678888986554 346777778889999998 33 33566667
Q ss_pred cCEEEe--------cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHH------H
Q 011149 156 VDLIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED------V 221 (492)
Q Consensus 156 v~~VI~--------~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~------~ 221 (492)
+.++|. +++-.+....+-+.-+--|.| |++.+....+..|.+.-..++..+.+..... .
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTG-------LFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L 230 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTG-------LFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSL 230 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccc-------cccchhhHHHHHHHHhhccCceeeeecccccccCchhh
Confidence 887773 223344555555554444443 6777776667777665444443322211110 0
Q ss_pred --------HHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc---------C-CCCCCCCcccccCC
Q 011149 222 --------LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS---------G-FSRPPSSRSLINHE 283 (492)
Q Consensus 222 --------~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~---------~-~~~~~~~~~l~~~~ 283 (492)
...+...+++.|.....+....|-++.. ..+-+...+..+. | ++++.+.+.+..+.
T Consensus 231 ~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCa------sVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~ 304 (567)
T KOG0345|consen 231 ALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCA------SVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFR 304 (567)
T ss_pred cceeeEecHHHHHHHHHHHHhccccccEEEEecCcc------hHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHH
Confidence 0223344444444432222222211100 0111122222221 1 23333444555555
Q ss_pred CCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHHHHHHHHhh
Q 011149 284 QGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNK 351 (492)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~ 351 (492)
...-.+++.+|. +++|+|+.+|..+|..+.|..++. .||+......+.+.+|+...++...+++..
T Consensus 305 ~~~~~vl~~TDV--aARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i 374 (567)
T KOG0345|consen 305 KLSNGVLFCTDV--AARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRI 374 (567)
T ss_pred hccCceEEeehh--hhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHh
Confidence 555678889998 899999999999999999987765 799999888877667777666666777754
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00012 Score=80.81 Aligned_cols=78 Identities=26% Similarity=0.411 Sum_probs=58.6
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHccc-ceeeecCCCCHHHHHHHHhhhc----CCCeEEEEecccccccCCCCC--cCE
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFR----QGKFTVLVATDVAARGLDIPN--VDL 158 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~~~-~~~~lhg~~~~~~r~~~~~~F~----~g~~~iLVaT~~~~~Gidi~~--v~~ 158 (492)
...+.+|||+++.+..++++..|.... .....++. ..+.++++.|+ .++-.||++|..+.+|||+|+ +++
T Consensus 532 ~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 532 EKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 345579999999999999999987432 22344554 34677887776 466789999999999999986 678
Q ss_pred EEecCCCC
Q 011149 159 IIHYELPN 166 (492)
Q Consensus 159 VI~~~~P~ 166 (492)
||...+|.
T Consensus 609 vII~kLPF 616 (697)
T PRK11747 609 VIITKIPF 616 (697)
T ss_pred EEEEcCCC
Confidence 88777663
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00031 Score=77.52 Aligned_cols=102 Identities=21% Similarity=0.268 Sum_probs=73.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcccc--eeeecCCCCHHHHHHHHhhhcCCCe-EEEEecccccccCCCCCc--CEEEec
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSIIA--SEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV--DLIIHY 162 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~~~--~~~lhg~~~~~~r~~~~~~F~~g~~-~iLVaT~~~~~Gidi~~v--~~VI~~ 162 (492)
++++|||+++.+..+.+++.+..... ....++.. .+...+++|+...- .++|+|..+++|||+|+- ..||..
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 46899999999999999999986432 44555553 44578888887654 899999999999999865 567766
Q ss_pred CCCC------------------------------ChhHHHHHhhhcccCCCCCeEEEecC
Q 011149 163 ELPN------------------------------DPETFVHRSGRTGRAGKEGTAILMFT 192 (492)
Q Consensus 163 ~~P~------------------------------~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (492)
.+|. -...+.|-+||.=|.-..--+++++.
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 6653 23444888999988543333333333
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00015 Score=79.72 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=72.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc------cceeeecCCCCHH---------------------HHHHHHhhhcC-CCeE
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQH---------------------QRERTLNGFRQ-GKFT 139 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~------~~~~~lhg~~~~~---------------------~r~~~~~~F~~-g~~~ 139 (492)
..+++|||.++..|..+++.|.+. ...+++++..... ....++++|++ +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 379999999999999999888643 2344555543221 23478899976 6889
Q ss_pred EEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccC
Q 011149 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (492)
Q Consensus 140 iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~ 181 (492)
|||.++.+..|.|.|.+++++...+-.+. .++|.+||+.|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 99999999999999999998877765654 589999999994
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.91 E-value=5e-05 Score=81.72 Aligned_cols=92 Identities=25% Similarity=0.366 Sum_probs=75.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHccc------ceeeecCCCCHHHHHHHHhhhcC--CCeEEEEecccccccCCCCCcCEE
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSII------ASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~~------~~~~lhg~~~~~~r~~~~~~F~~--g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
-.|+||||.+..+|+.+.+.|.+.+ .+..+.++-.+.+ ..++.|.. .--+|.|+.+++..|||+|.|..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 3589999999999999999998643 3677788754443 33555544 335688999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccC
Q 011149 160 IHYELPNDPETFVHRSGRTGRA 181 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~ 181 (492)
|.+..-.|...|.||+||.-|.
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999999884
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.3e-05 Score=84.24 Aligned_cols=118 Identities=19% Similarity=0.304 Sum_probs=101.1
Q ss_pred cHHHHHHHHH-HHH-ccCC--eEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCC--CeEEEEecc
Q 011149 73 SKRTILSDLI-TVY-AKGG--KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 145 (492)
Q Consensus 73 ~k~~~l~~ll-~~~-~~~~--~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g--~~~iLVaT~ 145 (492)
.|...+.+++ ... .... ++|||+......+.+...+.. .+....++|.++.+.|...+++|.++ ..-+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5777777777 333 3445 899999999999999999986 46899999999999999999999985 455678889
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEe
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (492)
+...|+|+...++||+||+.|++....|...|+.|.|.+..+.++
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999999999999999999999999866654443
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00022 Score=79.44 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=66.8
Q ss_pred EEEeCChHHHHHHHHHHHcc-------cceeeecCCCCHHHHHHHHhhh----------------------cC----CCe
Q 011149 92 IVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGF----------------------RQ----GKF 138 (492)
Q Consensus 92 iVF~~t~~~~~~l~~~l~~~-------~~~~~lhg~~~~~~r~~~~~~F----------------------~~----g~~ 138 (492)
+|-+++++.+..++..|... +.+.++|+..+...|..+++.+ ++ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 67778888888888877632 4477899998777776655443 11 356
Q ss_pred EEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCC
Q 011149 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (492)
Q Consensus 139 ~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~ 183 (492)
.|+|+|++++.|+|+ +.+++|- -|.+..+.+|++||+.|.+.
T Consensus 840 ~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 799999999999998 4565543 36678899999999999763
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.3e-05 Score=83.91 Aligned_cols=249 Identities=13% Similarity=0.175 Sum_probs=146.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-------cc--cccCCCC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------VA--ARGLDIP 154 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-------~~--~~Gidi~ 154 (492)
.-+||.|+|++.+.+|.+.+.. .+.+++.+|+...+++...+ ++| ..|+|||+ ++ .+=.+|-
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiael---kRg-~eIvV~tpGRmiD~l~~n~grvtnlr 514 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAEL---KRG-AEIVVCTPGRMIDILCANSGRVTNLR 514 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHH---hcC-CceEEeccchhhhhHhhcCCcccccc
Confidence 3579999999999999998874 36788889987777665554 446 78999998 11 2224455
Q ss_pred CcCEEEe------cCC---CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH----HHH
Q 011149 155 NVDLIIH------YEL---PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV----EDV 221 (492)
Q Consensus 155 ~v~~VI~------~~~---P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~----~~~ 221 (492)
.+++|+. +|+ |.. ...+|.+ |+- ...++++.+....+..+.+....++..+.+--. .++
T Consensus 515 R~t~lv~deaDrmfdmgfePq~-~~Ii~nl-rpd------rQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V 586 (997)
T KOG0334|consen 515 RVTYLVLDEADRMFDMGFEPQI-TRILQNL-RPD------RQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEV 586 (997)
T ss_pred ccceeeechhhhhheeccCccc-chHHhhc-chh------hhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccc
Confidence 5566662 333 332 3377877 443 446777777777788877665544332211110 000
Q ss_pred ---------HHHHHHHHHHHhccCC-ccchhhhH---HHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEE
Q 011149 222 ---------LESSAEQVVATLNGVH-PESVEFFT---PTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288 (492)
Q Consensus 222 ---------~~~~~~~~~~~l~~~~-~~~~~~f~---~~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~ 288 (492)
...+..++.+.|.... ......|. ..+..+++.+-...+...++|.- .++..+...+..++.+.+.
T Consensus 587 ~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGg-v~q~dR~sti~dfK~~~~~ 665 (997)
T KOG0334|consen 587 TQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGG-VDQHDRSSTIEDFKNGVVN 665 (997)
T ss_pred eEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCC-CchHHHHhHHHHHhccCce
Confidence 0122222222222110 11111121 11233333333333333334432 4444444445678899999
Q ss_pred EEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeec-CHHHHHHHHhhc
Q 011149 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL-PEEIAKELLNKQ 352 (492)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv-~~~~a~~~i~~~ 352 (492)
|+++++. +++|+++.++.-+|+++.|..-++ .|++.+...-+.+.+|++. ..+++..+.++.
T Consensus 666 LLvaTsv--varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 666 LLVATSV--VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred EEEehhh--hhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 9999998 799999999999999998876655 6777777665545566666 344555555544
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.86 E-value=9e-05 Score=75.16 Aligned_cols=106 Identities=25% Similarity=0.352 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcC-CCeEEEEeccccccc
Q 011149 73 SKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ-GKFTVLVATDVAARG 150 (492)
Q Consensus 73 ~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~-g~~~iLVaT~~~~~G 150 (492)
.|..+..-|++.+. .+.++|||..+.-...+.+-.|.+ -.++|..+|.+|.++++.|+- ..++.++-+.|....
T Consensus 527 ~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtS 602 (776)
T KOG1123|consen 527 NKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTS 602 (776)
T ss_pred chhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCcc
Confidence 45666666776663 467999999888777776666644 458999999999999999985 467888999999999
Q ss_pred CCCCCcCEEEecCCC-CChhHHHHHhhhcccCC
Q 011149 151 LDIPNVDLIIHYELP-NDPETFVHRSGRTGRAG 182 (492)
Q Consensus 151 idi~~v~~VI~~~~P-~~~~~y~qr~GR~gR~g 182 (492)
||+|..+++|+..-- -+..+-.||.||.-|+-
T Consensus 603 iDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 603 IDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred ccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 999999999986543 46677789999999975
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0001 Score=74.63 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=97.2
Q ss_pred cHHHHHHHHHHHHcc---CCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCC-CeEE-EEeccc
Q 011149 73 SKRTILSDLITVYAK---GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTV-LVATDV 146 (492)
Q Consensus 73 ~k~~~l~~ll~~~~~---~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~i-LVaT~~ 146 (492)
.|.++|..-|..+.+ .-+.|||..-....+.+.-.|.+ ++.++-|.|.|++.+|..+++.|++. .+.| ||+-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 466666555544422 34789999999999999888886 89999999999999999999999985 4554 566677
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCC--CCCeEEEecCh
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEGTAILMFTS 193 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~ 193 (492)
...-+|+...++|++.|+-|++..-+|.--|..|.| ++-.++.|+-.
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 777789999999999999999999999888888887 45566666544
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.9e-05 Score=76.87 Aligned_cols=247 Identities=13% Similarity=0.124 Sum_probs=136.5
Q ss_pred HHHHHHHccC---CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc----
Q 011149 79 SDLITVYAKG---GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV---- 146 (492)
Q Consensus 79 ~~ll~~~~~~---~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~---- 146 (492)
..+|+.+.++ .-++||+||++.+-++++.+.- .+++.++.|+++.-.+...+.+ .-.++|||+-
T Consensus 63 LPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~----rPHvVvatPGRlad 138 (442)
T KOG0340|consen 63 LPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD----RPHVVVATPGRLAD 138 (442)
T ss_pred HHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhccc----CCCeEecCcccccc
Confidence 3455555432 3589999999999999998862 4789999999987777766665 7789999982
Q ss_pred -ccccC--CC---CCcCE-EE-------ecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCC---C
Q 011149 147 -AARGL--DI---PNVDL-II-------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC---K 209 (492)
Q Consensus 147 -~~~Gi--di---~~v~~-VI-------~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~---~ 209 (492)
+.-.. +. ..+.+ |+ .-++|.+.+...+-. .+....+|++..-...++.+...--. .
T Consensus 139 ~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l-------P~~RQtLlfSATitd~i~ql~~~~i~k~~a 211 (442)
T KOG0340|consen 139 HLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL-------PKPRQTLLFSATITDTIKQLFGCPITKSIA 211 (442)
T ss_pred ccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccC-------CCccceEEEEeehhhHHHHhhcCCcccccc
Confidence 11110 10 11112 22 333444444443322 12245556655544444444322111 1
Q ss_pred ceecC---CCCHHH-----------HHHHHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCC
Q 011149 210 FEFVS---PPVVED-----------VLESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSR 272 (492)
Q Consensus 210 ~~~~~---~p~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~ 272 (492)
+++.. .+..+. +.+..+-.++...+......+-.|..+ ++.|.-.+..-.+...-+|.. +.|
T Consensus 212 ~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~-m~Q 290 (442)
T KOG0340|consen 212 FELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQ-MPQ 290 (442)
T ss_pred eEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhc-chH
Confidence 22211 111111 111222222222222111122222211 111111111111111222222 344
Q ss_pred CCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEee
Q 011149 273 PPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFD 339 (492)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fd 339 (492)
..+..+|..++.+-+++++++|. |.+|+|+..|--++|++.|..+++ +||+..+...+.+.|+|.
T Consensus 291 ~eR~~aLsrFrs~~~~iliaTDV--AsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt 359 (442)
T KOG0340|consen 291 KERLAALSRFRSNAARILIATDV--ASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVT 359 (442)
T ss_pred HHHHHHHHHHhhcCccEEEEech--hhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEec
Confidence 44555677889999999999999 899999999999999999988776 789888888877778886
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.7e-05 Score=67.35 Aligned_cols=105 Identities=24% Similarity=0.396 Sum_probs=71.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHccc---ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc--cccccCCCCC--cCEE
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLI 159 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~--~~~~Gidi~~--v~~V 159 (492)
.++.+|||+++.+..+.+.+.+.... ....+.- ....+..+++.|+.+.-.||+++. .+.+|||+|+ +..|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 35899999999999999999988532 2223332 356788999999999999999999 9999999995 6678
Q ss_pred EecCCCC----Ch--------------------------hHHHHHhhhcccCCCCCeEEEecCh
Q 011149 160 IHYELPN----DP--------------------------ETFVHRSGRTGRAGKEGTAILMFTS 193 (492)
Q Consensus 160 I~~~~P~----~~--------------------------~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (492)
|...+|. ++ ....|-+||.-|....--++++++.
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 8888774 21 1126778999887655445555554
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00016 Score=77.02 Aligned_cols=122 Identities=20% Similarity=0.319 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHHHcc-CCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCC-e-EEEEeccccc
Q 011149 73 SKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK-F-TVLVATDVAA 148 (492)
Q Consensus 73 ~k~~~l~~ll~~~~~-~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~-~-~iLVaT~~~~ 148 (492)
.|...|..||..+.+ +.++|||..-....+.|...|.. .+...-|.|...-..|+.+++.|...+ + -.|++|-+..
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG 840 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGG 840 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCc
Confidence 467778888877644 47999999988888888888874 788889999999999999999998753 3 3588999999
Q ss_pred ccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCC--CeEEEecChh
Q 011149 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE--GTAILMFTSS 194 (492)
Q Consensus 149 ~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~--g~~i~l~~~~ 194 (492)
-|||+...++||.+|+-.+|-.=.|.--|+.|.|.+ -+++.|++..
T Consensus 841 ~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 841 FGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred ceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 999999999999999988887888888888898844 4566667654
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00016 Score=76.11 Aligned_cols=121 Identities=17% Similarity=0.307 Sum_probs=103.3
Q ss_pred ccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCCe-EEEEeccccc
Q 011149 72 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAA 148 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~-~iLVaT~~~~ 148 (492)
..|+.+|..||..+. .+.++|+|+...+..+.+.++|. +.+...-|.|.....+|..++..|..-++ -+|++|-+..
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 357778888887763 46799999999999999999998 47889999999999999999999987554 4588999999
Q ss_pred ccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCe--EEEecC
Q 011149 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFT 192 (492)
Q Consensus 149 ~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~--~i~l~~ 192 (492)
.|||+...+.||.||--|++..-.|...|+.|.|.+-. +|-|++
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~ 1152 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLIT 1152 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecc
Confidence 99999999999999999999999999999999986544 444444
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00036 Score=76.26 Aligned_cols=121 Identities=20% Similarity=0.312 Sum_probs=104.0
Q ss_pred cccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCC---eEEEEecc
Q 011149 71 ATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~---~~iLVaT~ 145 (492)
..-|+++|..+|..+. .+.++|.||........+..+|. +.+...-+.|.....+|-..++.|..-. +.+|.+|-
T Consensus 708 ~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstr 787 (1157)
T KOG0386|consen 708 VSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTR 787 (1157)
T ss_pred hccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeec
Confidence 3568999999987774 46799999999888888888887 4778888999999999999999998643 45789999
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEec
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 191 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~ 191 (492)
....|+|+...+.||.||.-|++....|+--|+.|.|.+-.+-++.
T Consensus 788 agglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 788 AGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred ccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 9999999999999999999999999999999999999665555543
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.9e-05 Score=84.03 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=70.5
Q ss_pred cHHHHH-HHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-
Q 011149 73 SKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD- 145 (492)
Q Consensus 73 ~k~~~l-~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~- 145 (492)
-|..+. ..++..+....+++|.+||+..|++.++.+.+. +.+..+++.++..++.++++.+++|+.+|||+|.
T Consensus 484 GKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ 563 (926)
T TIGR00580 484 GKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK 563 (926)
T ss_pred cHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH
Confidence 454433 333444445689999999999999999988752 4677899999999999999999999999999997
Q ss_pred cccccCCCCCcCEEEe
Q 011149 146 VAARGLDIPNVDLIIH 161 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~ 161 (492)
.+...+.+.++.+||.
T Consensus 564 ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 564 LLQKDVKFKDLGLLII 579 (926)
T ss_pred HhhCCCCcccCCEEEe
Confidence 4445677889998884
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0014 Score=70.70 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=61.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcccc-eeeecCCCCHHHHHHHHhhhcCC----CeEEEEecccccccCCC--------
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQG----KFTVLVATDVAARGLDI-------- 153 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~-~~~lhg~~~~~~r~~~~~~F~~g----~~~iLVaT~~~~~Gidi-------- 153 (492)
..++++|.+.+....+.+++.|...+. ...+.|+.+ .+...+++|+.. .-.||++|+.+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 457999999999999999999986543 344556542 446678888873 67899999999999999
Q ss_pred --CCcCEEEecCCCC
Q 011149 154 --PNVDLIIHYELPN 166 (492)
Q Consensus 154 --~~v~~VI~~~~P~ 166 (492)
..+++||...+|.
T Consensus 547 ~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 547 KDNLLTDLIITCAPF 561 (636)
T ss_pred CCCcccEEEEEeCCC
Confidence 3578899877763
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=4.7e-05 Score=87.70 Aligned_cols=231 Identities=13% Similarity=0.100 Sum_probs=126.2
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-cccccCCCCCcCEE
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARGLDIPNVDLI 159 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-~~~~Gidi~~v~~V 159 (492)
....+++|.+||+..|.+++..+.+. +.+..+++..+..++.++++.++++..+|||+|+ .+...+.+.++.+|
T Consensus 647 ~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lL 726 (1147)
T PRK10689 647 ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLL 726 (1147)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEE
Confidence 45679999999999999999988742 4577899999999999999999999999999997 44445667788887
Q ss_pred EecCCC-CChhHHHHHhhhcccCCCCCeEEEecChhh-HHHHHHHHHHhCCCceecCCCCHHH--H-------H-HHHHH
Q 011149 160 IHYELP-NDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVED--V-------L-ESSAE 227 (492)
Q Consensus 160 I~~~~P-~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p~~~~--~-------~-~~~~~ 227 (492)
|.=..- ... ....++-. -.....+++++.+- .+.+ .+......++..+..|.... + . .....
T Consensus 727 VIDEahrfG~-~~~e~lk~----l~~~~qvLl~SATpiprtl-~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~ 800 (1147)
T PRK10689 727 IVDEEHRFGV-RHKERIKA----MRADVDILTLTATPIPRTL-NMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVRE 800 (1147)
T ss_pred EEechhhcch-hHHHHHHh----cCCCCcEEEEcCCCCHHHH-HHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHH
Confidence 731110 011 11222211 12345566666552 2222 22222222333322221110 0 0 01112
Q ss_pred HHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc----------CCCCCCCCcccccCCCCeEEEEEeecCcc
Q 011149 228 QVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS----------GFSRPPSSRSLINHEQGWVTLQLTRDSAF 297 (492)
Q Consensus 228 ~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 297 (492)
.+...+... ..+-.|....+. .+.++..|..+. ++++..+.+.+..+..+.+.++|+++.
T Consensus 801 ~il~el~r~--gqv~vf~n~i~~------ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdI-- 870 (1147)
T PRK10689 801 AILREILRG--GQVYYLYNDVEN------IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI-- 870 (1147)
T ss_pred HHHHHHhcC--CeEEEEECCHHH------HHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECch--
Confidence 223333221 112222111110 111222222221 122222334455677888999999987
Q ss_pred ccCCCChhHHHHHHh-----hhCCCCcCccccEEEeecCc
Q 011149 298 SRGFMSARSVMGFLS-----DVYPTAADEIGKIHIIADDR 332 (492)
Q Consensus 298 ~~~~~~~~~i~~~i~-----~~~~~~~~~ig~i~~~~~~~ 332 (492)
..+|+|..++..+|. +..+.....+||+.+....+
T Consensus 871 ierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g 910 (1147)
T PRK10689 871 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 (1147)
T ss_pred hhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce
Confidence 688999999888773 22222222378887765543
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00022 Score=75.39 Aligned_cols=249 Identities=14% Similarity=0.127 Sum_probs=129.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc-cc------cC-CCCCcC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-AR------GL-DIPNVD 157 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-~~------Gi-di~~v~ 157 (492)
....+||.+|+++.+++.+..|.. .+.+..++++.+..++..++..+..+..+||++|+-. .. .+ ....+.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 457899999999999988888875 7888999999999999999999999999999999732 11 12 445677
Q ss_pred EEEecCC----CC--C-hhHHHHHhhhcccCCCCCeEEEecChh-hHHHHHHHHHHhCCCceec---CC--CCH----HH
Q 011149 158 LIIHYEL----PN--D-PETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFV---SP--PVV----ED 220 (492)
Q Consensus 158 ~VI~~~~----P~--~-~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~~---~~--p~~----~~ 220 (492)
+||.-.. .| + ...| .+++..-+. .+...+++++.+ .....+.+.+.+......+ .. |.. ..
T Consensus 130 ~iViDEaH~i~~~g~~fr~~~-~~l~~l~~~-~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~ 207 (470)
T TIGR00614 130 LIAVDEAHCISQWGHDFRPDY-KALGSLKQK-FPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRR 207 (470)
T ss_pred EEEEeCCcccCccccccHHHH-HHHHHHHHH-cCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEe
Confidence 7663111 11 1 1222 222221111 122334444433 2223333444433211100 00 000 00
Q ss_pred HHHHHHHHHHHHhccC-CccchhhhH---HHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCc
Q 011149 221 VLESSAEQVVATLNGV-HPESVEFFT---PTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSA 296 (492)
Q Consensus 221 ~~~~~~~~~~~~l~~~-~~~~~~~f~---~~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 296 (492)
........+...+... .......|. ..++.+.+.+....+.++..|. ++++..+...+..+..+.+.++++++.
T Consensus 208 ~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~-~l~~~eR~~i~~~F~~g~~~vLVaT~~- 285 (470)
T TIGR00614 208 KTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHA-GLEISARDDVHHKFQRDEIQVVVATVA- 285 (470)
T ss_pred CCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeC-CCCHHHHHHHHHHHHcCCCcEEEEech-
Confidence 0001122222222211 111111221 1222222222111111111111 122222222334566788899999986
Q ss_pred cccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeec
Q 011149 297 FSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL 340 (492)
Q Consensus 297 ~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv 340 (492)
...|+|..+|..+|+...|...+. +||..+....+...+|++.
T Consensus 286 -~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~ 332 (470)
T TIGR00614 286 -FGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAP 332 (470)
T ss_pred -hhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEech
Confidence 578999999999999888865543 7888776554433444443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF13696 zf-CCHC_2: Zinc knuckle | Back alignment and domain information |
|---|
Probab=97.53 E-value=2.8e-05 Score=48.34 Aligned_cols=17 Identities=41% Similarity=1.257 Sum_probs=15.9
Q ss_pred CcccCCCCCcccCCCCC
Q 011149 476 ACFNCGKSGHRASECPN 492 (492)
Q Consensus 476 ~c~~cg~~gh~a~~cp~ 492 (492)
.|+.|++.|||.+|||.
T Consensus 10 ~C~~C~~~GH~i~dCP~ 26 (32)
T PF13696_consen 10 VCHRCGQKGHWIQDCPT 26 (32)
T ss_pred EeecCCCCCccHhHCCC
Confidence 49999999999999994
|
|
| >KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=63.77 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=6.1
Q ss_pred eecCHHHHHHHHh
Q 011149 338 FDLPEEIAKELLN 350 (492)
Q Consensus 338 fdv~~~~a~~~i~ 350 (492)
.|+.+..+.++-.
T Consensus 284 ~~~Re~Taski~k 296 (465)
T KOG3973|consen 284 MDRRERTASKIHK 296 (465)
T ss_pred cchhhhhhhhhcc
Confidence 4455555544433
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00013 Score=80.43 Aligned_cols=89 Identities=17% Similarity=0.251 Sum_probs=71.5
Q ss_pred cHHH-HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 73 SKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 73 ~k~~-~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
-|.. .+..++..+..+.+++|.+||+..|.++++.+++ .+.+..+||+++..+|.++++.+.+|+.+|+|+|..
T Consensus 294 GKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ 373 (681)
T PRK10917 294 GKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHA 373 (681)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHH
Confidence 4443 2333444455667999999999999999988874 367899999999999999999999999999999974
Q ss_pred -ccccCCCCCcCEEEe
Q 011149 147 -AARGLDIPNVDLIIH 161 (492)
Q Consensus 147 -~~~Gidi~~v~~VI~ 161 (492)
+...+.+.++.+||.
T Consensus 374 ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 374 LIQDDVEFHNLGLVII 389 (681)
T ss_pred HhcccchhcccceEEE
Confidence 444577889998884
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0048 Score=68.58 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=57.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-c-------ceeeecCCCCHHHHHHHHhhhcC----CCeEEEEec--ccccccCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI-I-------ASEALHGDISQHQRERTLNGFRQ----GKFTVLVAT--DVAARGLDI 153 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-~-------~~~~lhg~~~~~~r~~~~~~F~~----g~~~iLVaT--~~~~~Gidi 153 (492)
++.+|||+++....+.+++.+... + ....+-+ -...++++++++|+. +.-.||+|+ ..+++|||+
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 578999999999999998887641 1 1122212 112578889999964 345699998 889999999
Q ss_pred CC--cCEEEecCCCC
Q 011149 154 PN--VDLIIHYELPN 166 (492)
Q Consensus 154 ~~--v~~VI~~~~P~ 166 (492)
++ ...||..++|.
T Consensus 601 ~~~~~r~ViivGlPf 615 (705)
T TIGR00604 601 CDDLGRAVIMVGIPY 615 (705)
T ss_pred CCCCCcEEEEEccCC
Confidence 86 57888888875
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=8e-05 Score=78.89 Aligned_cols=245 Identities=15% Similarity=0.161 Sum_probs=122.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc------ccccCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidi~~v~ 157 (492)
.++||.++|++.+.++++.+.. .+.+..++|+.+...+.+ .+.....+|||+|+- ....+.+.+++
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLK---QLEARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHH---HHhCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 5799999999999999887763 356788899877655433 334456789999972 23346677888
Q ss_pred EEEecCCC--CChhHHHHHhhhcccCC--CCCeEEEecChhhHHHHHHHHHHhCCCceecCC-------CCHHH----H-
Q 011149 158 LIIHYELP--NDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP-------PVVED----V- 221 (492)
Q Consensus 158 ~VI~~~~P--~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~-------p~~~~----~- 221 (492)
+||.=+.- .+ ..|..++-|.-|.- .....+++++.+-...+..+.+.+......+.+ +.... +
T Consensus 240 ~lViDEah~l~~-~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 318 (475)
T PRK01297 240 VMVLDEADRMLD-MGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVA 318 (475)
T ss_pred eEEechHHHHHh-cccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEec
Confidence 87741110 00 11222222222211 112345555554333333333333222111100 00000 0
Q ss_pred HHHHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCccc
Q 011149 222 LESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFS 298 (492)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 298 (492)
.......+...+.......+..|... ++.+.+.+....+.++..+. ++++..+...+..++.|...++++++. .
T Consensus 319 ~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g-~~~~~~R~~~~~~Fr~G~~~vLvaT~~--l 395 (475)
T PRK01297 319 GSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSG-DVPQHKRIKTLEGFREGKIRVLVATDV--A 395 (475)
T ss_pred chhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEEC-CCCHHHHHHHHHHHhCCCCcEEEEccc--c
Confidence 00111122222222222222233221 22222211111000000000 011111222344567788999999987 6
Q ss_pred cCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeec
Q 011149 299 RGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL 340 (492)
Q Consensus 299 ~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv 340 (492)
..|+|..++..+|+...|....+ +||..+....+...+|++-
T Consensus 396 ~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~ 441 (475)
T PRK01297 396 GRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGE 441 (475)
T ss_pred ccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecH
Confidence 88999999999999888766554 7888887665544455543
|
|
| >KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00014 Score=70.67 Aligned_cols=66 Identities=17% Similarity=0.388 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSF--RSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECP 491 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp 491 (492)
..|++|++.||..++|+...... .-.++.|+.. +|+ + ......-.......||+||+.|||++|||
T Consensus 93 ~~c~~C~~~gH~~~~c~~~~~~~~~~~~~~~c~~~-----gh~--~---~~~~~~~~~~~~~~Cy~Cg~~GH~s~~C~ 160 (261)
T KOG4400|consen 93 AACFNCGEGGHIERDCPEAGKEGSSETSCYSCGKT-----GHR--G---CPDADPVDGPKPAKCYSCGEQGHISDDCP 160 (261)
T ss_pred hhhhhCCCCccchhhCCcccCcccccceeeccCCC-----ccc--c---CcccccccCCCCCccCCCCcCCcchhhCC
Confidence 56889999999999998765433 2345566633 333 1 00000000111144999999999999998
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0015 Score=71.11 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=97.9
Q ss_pred ccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHc----c-------------------cceeeecCCCCHHHHH
Q 011149 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS----I-------------------IASEALHGDISQHQRE 127 (492)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~----~-------------------~~~~~lhg~~~~~~r~ 127 (492)
..|+.+|.+||..- .-+.++|||..+....+.|..+|.. . .....|.|.....+|+
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 35666777777654 3467999999999888888877752 1 1245578889999999
Q ss_pred HHHhhhcCCC----eEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEe
Q 011149 128 RTLNGFRQGK----FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (492)
Q Consensus 128 ~~~~~F~~g~----~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (492)
.+.+.|.+-. ...||+|-+.+.|||+-..+-||.||..|++.--+|-+=|+-|.|.+.-||++
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9999998632 34799999999999999999999999999999999999999999988777765
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0012 Score=71.59 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=12.4
Q ss_pred ccc-EEEeecCccceeEeecCHHHHHH
Q 011149 322 IGK-IHIIADDRVQGAVFDLPEEIAKE 347 (492)
Q Consensus 322 ig~-i~~~~~~~~~gs~fdv~~~~a~~ 347 (492)
.|. |-+.|+- --+++..+.|..
T Consensus 1075 dgq~IV~VDdW----IklqIshEaAAc 1097 (1282)
T KOG0921|consen 1075 DGQGIVRVDDW----IKLQISHEAAAC 1097 (1282)
T ss_pred cCcceEEeece----eeEeccHHHHHH
Confidence 344 5544443 457787776654
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00019 Score=76.78 Aligned_cols=250 Identities=15% Similarity=0.169 Sum_probs=128.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cc-cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~-~~Gidi~~v 156 (492)
..++||.+||++.|.++.+.+.. .+.+..+.|+.+..++...+ +. ..+|||+|+ .+ ...+++.++
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l---~~-~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRI---QQ-GVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHh---cC-CCCEEEECHHHHHHHHHcCCccchhe
Confidence 35799999999999988777653 24556667665544443333 22 468999996 22 346778888
Q ss_pred CEEEecCCC--CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH----HHH--------H
Q 011149 157 DLIIHYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV----EDV--------L 222 (492)
Q Consensus 157 ~~VI~~~~P--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~----~~~--------~ 222 (492)
.+||.=+.- .+ ..|...+-+.-+.- +...+++++.+-...++.+.+.+...+..+..... ..+ .
T Consensus 272 ~~lViDEad~ml~-~gf~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~ 349 (518)
T PLN00206 272 SVLVLDEVDCMLE-RGFRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET 349 (518)
T ss_pred eEEEeecHHHHhh-cchHHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc
Confidence 887732210 00 01211111111111 12345666655444555555554433322111100 000 0
Q ss_pred HHHHHHHHHHhccCC--ccchhhhHHHHHHHHhhhCHHHHHHHHHHHcC---------CCCCCCCcccccCCCCeEEEEE
Q 011149 223 ESSAEQVVATLNGVH--PESVEFFTPTAQRLIEEKGTDALAAALAQLSG---------FSRPPSSRSLINHEQGWVTLQL 291 (492)
Q Consensus 223 ~~~~~~~~~~l~~~~--~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~---------~~~~~~~~~l~~~~~~~~~~~~ 291 (492)
......+.+.+.... ......|..+. ...+.++..|....+ +++..+...+..++.|.+.+++
T Consensus 350 ~~k~~~l~~~l~~~~~~~~~~iVFv~s~------~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILV 423 (518)
T PLN00206 350 KQKKQKLFDILKSKQHFKPPAVVFVSSR------LGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIV 423 (518)
T ss_pred hhHHHHHHHHHHhhcccCCCEEEEcCCc------hhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEE
Confidence 011122222222111 01112222110 111223333322222 1221222334556788899999
Q ss_pred eecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH-HHHHHHhh
Q 011149 292 TRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE-IAKELLNK 351 (492)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~-~a~~~i~~ 351 (492)
+++. +.+|+|..++..+|+++.|...++ +||..+....+...+|++-.+. .+.++++.
T Consensus 424 aTdv--l~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~ 486 (518)
T PLN00206 424 ATGV--LGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVAL 486 (518)
T ss_pred EecH--hhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHH
Confidence 9997 789999999999999998876554 8888887766655666654332 33444443
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00084 Score=74.57 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHHHHc----------cCCeEEEEeCChHHHHHHHHHHHc
Q 011149 71 ATSKRTILSDLITVYA----------KGGKTIVFTQTKRDADEVSLALTS 110 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~----------~~~~~iVF~~t~~~~~~l~~~l~~ 110 (492)
...|+..|.++|+.+. .+.++||||+.+.+|.+|.+.|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 3456666666665432 235799999999999999998865
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00016 Score=68.43 Aligned_cols=246 Identities=12% Similarity=0.110 Sum_probs=134.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cc-cccCCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPN 155 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~-~~Gidi~~ 155 (492)
..-++||..||++.+.++.+.+.. .+.+.+.-|+.+-.+-.+.++ - ...++..|+ .. -+-+...+
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld---~-G~hvVsGtPGrv~dmikr~~L~tr~ 169 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLD---Y-GQHVVSGTPGRVLDMIKRRSLRTRA 169 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhc---c-cceEeeCCCchHHHHHHhccccccc
Confidence 346899999999999998887763 245555566655544444444 2 457888887 22 34466677
Q ss_pred cCEEEecCC--CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHH---H-HH-------
Q 011149 156 VDLIIHYEL--PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE---D-VL------- 222 (492)
Q Consensus 156 v~~VI~~~~--P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~---~-~~------- 222 (492)
|.++|.-.. --+. .|-+.+=+.-|.-.++..++|++.+-...+.++-+++..++.++.....+ | +.
T Consensus 170 vkmlVLDEaDemL~k-gfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve 248 (400)
T KOG0328|consen 170 VKMLVLDEADEMLNK-GFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE 248 (400)
T ss_pred eeEEEeccHHHHHHh-hHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec
Confidence 777664221 1111 44455556667667788999988876665555555544444332221111 1 10
Q ss_pred -HHHHHHHHHHhc-cCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCcc
Q 011149 223 -ESSAEQVVATLN-GVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF 297 (492)
Q Consensus 223 -~~~~~~~~~~l~-~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 297 (492)
+.|.-+.+..|. .+...+...|-.+ +.=|-+......+...-+|.. +++..+..-+..++.+..++++.++.+
T Consensus 249 ~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGD-m~qkERd~im~dFRsg~SrvLitTDVw- 326 (400)
T KOG0328|consen 249 KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD-MEQKERDKIMNDFRSGKSRVLITTDVW- 326 (400)
T ss_pred hhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCC-cchhHHHHHHHHhhcCCceEEEEechh-
Confidence 111111111111 1111111122111 111111111122222222222 333333333456788899999999984
Q ss_pred ccCCCChhHHHHHHhhhCCCCcCc-cccEEEeecCccceeEeec
Q 011149 298 SRGFMSARSVMGFLSDVYPTAADE-IGKIHIIADDRVQGAVFDL 340 (492)
Q Consensus 298 ~~~~~~~~~i~~~i~~~~~~~~~~-ig~i~~~~~~~~~gs~fdv 340 (492)
++|+|+..+..+||++.|...+. |=||.....|+..|+.++.
T Consensus 327 -aRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainF 369 (400)
T KOG0328|consen 327 -ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 369 (400)
T ss_pred -hccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEE
Confidence 88999999999999999987765 5555555555555555554
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0015 Score=68.58 Aligned_cols=248 Identities=12% Similarity=0.108 Sum_probs=140.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~ 155 (492)
..+.+|.+||++.+.+|.+.+.. ++.+.++-|+.+-..-..-+ .+.+|+|.|+ +--+-+|+..
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-----k~~rIvIGtPGRi~qL~el~~~n~s~ 167 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-----KQTRIVIGTPGRIAQLVELGAMNMSH 167 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-----hhceEEecCchHHHHHHHhcCCCccc
Confidence 45789999999999999888763 36788888887655433223 3577999998 3334478888
Q ss_pred cCEEEe--cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCcee--------------------c
Q 011149 156 VDLIIH--YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF--------------------V 213 (492)
Q Consensus 156 v~~VI~--~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~--------------------~ 213 (492)
|++.|. .|--.+..+|.|.+.-.=-+-..-..++.++.+-.+.+..+...+..++.. .
T Consensus 168 vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~ 247 (980)
T KOG4284|consen 168 VRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKC 247 (980)
T ss_pred eeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeecc
Confidence 888774 333345566766665543333344555556555444444444433222211 1
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEE
Q 011149 214 SPPVVEDVLESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 290 (492)
Q Consensus 214 ~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~ 290 (492)
..+..-+..+.+++.+...+..++-.+...|... |+.+...+....|-+.+.... ++|..+.-.....+.=.++++
T Consensus 248 s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISga-M~Q~~Rl~a~~~lr~f~~rIL 326 (980)
T KOG4284|consen 248 SPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGA-MSQKDRLLAVDQLRAFRVRIL 326 (980)
T ss_pred CCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccc-cchhHHHHHHHHhhhceEEEE
Confidence 2222334445555555555665555554444332 222222221111111111110 122211111112233357899
Q ss_pred EeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH
Q 011149 291 LTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE 343 (492)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~ 343 (492)
+++|. .++|+|...+.-+||-+.|...+. |||-..+...+.+.+|..-.++
T Consensus 327 VsTDL--taRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 327 VSTDL--TARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred Eecch--hhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99997 589999999988898888876654 8888887776655566655444
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0009 Score=74.45 Aligned_cols=236 Identities=11% Similarity=0.088 Sum_probs=123.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-cccccC---------C
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARGL---------D 152 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-~~~~Gi---------d 152 (492)
+..++||.+||++.+.++...|+. .+.+..++|+.+.++|..+.+ ..+|||+|+ .+..++ .
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~-----~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWARE-----HARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhc-----CCCEEEEChHHHHHhhccchhHHHHH
Confidence 346899999999999999998875 356788999999887754432 358999996 222121 2
Q ss_pred CCCcCEEEecCC-------CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCC----------
Q 011149 153 IPNVDLIIHYEL-------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP---------- 215 (492)
Q Consensus 153 i~~v~~VI~~~~-------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~---------- 215 (492)
+.++++||.=.. -.....++.|+-|..+.-.....+++++.+-....+..+...+..+..+..
T Consensus 155 l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~ 234 (742)
T TIGR03817 155 LRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTV 234 (742)
T ss_pred HhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEE
Confidence 567888873111 123445566665544321122455555543222222233333332221110
Q ss_pred ----CCH------------HHHHHHHHHHHHHHhccCCccchhhhH---HHHHHHHhhhCHH--------HHHHHHHHHc
Q 011149 216 ----PVV------------EDVLESSAEQVVATLNGVHPESVEFFT---PTAQRLIEEKGTD--------ALAAALAQLS 268 (492)
Q Consensus 216 ----p~~------------~~~~~~~~~~~~~~l~~~~~~~~~~f~---~~a~~l~~~~~~~--------~l~~al~~~~ 268 (492)
|.. ..........+...+.. .. ....|. +.++.+...+... .......| .
T Consensus 235 ~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~-~~-~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~h-g 311 (742)
T TIGR03817 235 ALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE-GA-RTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYR-A 311 (742)
T ss_pred EEecCCccccccccccccccchHHHHHHHHHHHHHC-CC-CEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhee-c
Confidence 110 00001111122222221 11 122222 1132222221100 00000001 1
Q ss_pred CCCCCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCc
Q 011149 269 GFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDR 332 (492)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~ 332 (492)
++.+..+.+.+..++.|.+.++++++. ...|+|+.+|..+|+...|..... +||..+....+
T Consensus 312 g~~~~eR~~ie~~f~~G~i~vLVaTd~--lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g 377 (742)
T TIGR03817 312 GYLPEDRRELERALRDGELLGVATTNA--LELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGA 377 (742)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEECch--HhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCc
Confidence 122222222334567899999999997 688999999999999998876554 78887765544
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=71.74 Aligned_cols=119 Identities=23% Similarity=0.247 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCC
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (492)
..++.++...+..+.|+||-+.+.+..+.+...|.+ +++..+|...-...+-+.+.+.=+ .--|-|||+.|.||-||
T Consensus 416 ~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~--~gaVTiATNMAGRGTDI 493 (822)
T COG0653 416 KAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQ--PGAVTIATNMAGRGTDI 493 (822)
T ss_pred HHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCC--CCccccccccccCCccc
Confidence 345566666777889999999999999999999985 788877777644333333333323 33478999999999998
Q ss_pred CCcC-----------EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 154 PNVD-----------LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 154 ~~v~-----------~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
.--. +||-..--.+..-=-|--||+||.|-+|.+..+++-.+
T Consensus 494 kLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 494 KLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred ccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 5222 34443333333333488999999999998877776544
|
|
| >PF13917 zf-CCHC_3: Zinc knuckle | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00018 Score=48.17 Aligned_cols=17 Identities=53% Similarity=1.273 Sum_probs=15.7
Q ss_pred CcccCCCCCcccCCCCC
Q 011149 476 ACFNCGKSGHRASECPN 492 (492)
Q Consensus 476 ~c~~cg~~gh~a~~cp~ 492 (492)
.|.+|++.|||+.+||+
T Consensus 6 ~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 6 RCQKCGQKGHWTYECPN 22 (42)
T ss_pred cCcccCCCCcchhhCCC
Confidence 49999999999999993
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.015 Score=65.58 Aligned_cols=184 Identities=15% Similarity=0.250 Sum_probs=114.4
Q ss_pred HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcC-cccH-H----HHHHHHHH
Q 011149 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSK-R----TILSDLIT 83 (492)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k-~----~~l~~ll~ 83 (492)
+..|.+++-++.+++.+|..+.+ +++++ ++...-.+.+... ....+..++...+... .... + ..+..+..
T Consensus 1279 ~r~ia~q~~k~ir~v~ls~~lan-a~d~i--g~s~~~v~Nf~p~-~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~ 1354 (1674)
T KOG0951|consen 1279 MRYIASQLEKKIRVVALSSSLAN-ARDLI--GASSSGVFNFSPS-VRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVR 1354 (1674)
T ss_pred HHHHHHHHHhheeEEEeehhhcc-chhhc--cccccceeecCcc-cCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHH
Confidence 56677777778888888877743 33332 3332233333211 1111222222222111 1111 1 12233333
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHcc-----------------------cceeeecCCCCHHHHHHHHhhhcCCCeEE
Q 011149 84 VYAKGGKTIVFTQTKRDADEVSLALTSI-----------------------IASEALHGDISQHQRERTLNGFRQGKFTV 140 (492)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~~-----------------------~~~~~lhg~~~~~~r~~~~~~F~~g~~~i 140 (492)
.....+++|||+++++.|..++..|-.. ++..+=|-+|+..+...+-.-|..|.++|
T Consensus 1355 ~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v 1434 (1674)
T KOG0951|consen 1355 HAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQV 1434 (1674)
T ss_pred HhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEE
Confidence 3345679999999999999887655321 22333388999999999999999999999
Q ss_pred EEecccccccCCCCCcCEEE-----ecC------CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHH
Q 011149 141 LVATDVAARGLDIPNVDLII-----HYE------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 141 LVaT~~~~~Gidi~~v~~VI-----~~~------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (492)
+|...- -.|+-.. .++|| -|| .+.+.....|+.|++.|+ +.|+++.....+.+++++
T Consensus 1435 ~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1435 CVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEEEcc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHHh
Confidence 988765 6676554 33444 133 456788999999999884 589999998887777654
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0012 Score=67.20 Aligned_cols=235 Identities=14% Similarity=0.142 Sum_probs=126.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCC----------
Q 011149 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD---------- 152 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gid---------- 152 (492)
-.+||.|||++.|.+++..++. .+.+..+-|+... ..-.++... .++|||||+ .|-+|
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~---~~e~~kl~k-~~niliATP--GRLlDHlqNt~~f~~ 228 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNF---SVEADKLVK-GCNILIATP--GRLLDHLQNTSGFLF 228 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccc---hHHHHHhhc-cccEEEeCC--chHHhHhhcCCcchh
Confidence 4689999999999998877663 2445556566332 222334444 789999998 12222
Q ss_pred -------CCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCC-ceecCCCCH-----H
Q 011149 153 -------IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK-FEFVSPPVV-----E 219 (492)
Q Consensus 153 -------i~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~-~~~~~~p~~-----~ 219 (492)
+...+++...+++.+.+..+--.. +-...++++.+....++.+.+-.... +..+..-.. .
T Consensus 229 r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp-------k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~Th 301 (543)
T KOG0342|consen 229 RNLKCLVLDEADRLLDIGFEEDVEQIIKILP-------KQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETH 301 (543)
T ss_pred hccceeEeecchhhhhcccHHHHHHHHHhcc-------ccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchh
Confidence 122333334556666655555554 33567788888888888887765443 433322211 1
Q ss_pred HHH---------HHHHHHHHHHhccCCc-cchhhhHHHH------HHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCC
Q 011149 220 DVL---------ESSAEQVVATLNGVHP-ESVEFFTPTA------QRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHE 283 (492)
Q Consensus 220 ~~~---------~~~~~~~~~~l~~~~~-~~~~~f~~~a------~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~ 283 (492)
+-+ ......+...|+.... ..+..|..++ .+|+...+ |...-.|. +.+|..+.+....+.
T Consensus 302 e~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~d---lpv~eiHg-k~~Q~kRT~~~~~F~ 377 (543)
T KOG0342|consen 302 ERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYID---LPVLEIHG-KQKQNKRTSTFFEFC 377 (543)
T ss_pred hcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcC---Cchhhhhc-CCcccccchHHHHHh
Confidence 100 0111222222222111 2233333322 12222111 01111111 122333333333445
Q ss_pred CCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH
Q 011149 284 QGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE 343 (492)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~ 343 (492)
....-+++.+|. +++|+|..+|..++-...|...++ |||+.+....+ .+.+|=.|.+
T Consensus 378 kaesgIL~cTDV--aARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G-~alL~l~p~E 438 (543)
T KOG0342|consen 378 KAESGILVCTDV--AARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEG-KALLLLAPWE 438 (543)
T ss_pred hcccceEEecch--hhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCc-eEEEEeChhH
Confidence 555668999998 799999999999999988887776 78888854443 3455555554
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00059 Score=73.64 Aligned_cols=93 Identities=17% Similarity=0.415 Sum_probs=75.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc--------------c--ceeeecCCCCHHHHHHHHh---hhcCCCeEEEEecccccc
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI--------------I--ASEALHGDISQHQRERTLN---GFRQGKFTVLVATDVAAR 149 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~--------------~--~~~~lhg~~~~~~r~~~~~---~F~~g~~~iLVaT~~~~~ 149 (492)
.++|-||.+.++..++++.+..- + .+..+.|.|.-.+|...+. .|...+++||--.-.+++
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 36899999998888887766421 2 3444557788888855543 445678899988889999
Q ss_pred cCCCCCcCEEEecCCCCChhHHHHHhhhcccC
Q 011149 150 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (492)
Q Consensus 150 Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~ 181 (492)
|+|+|.++.||.+++-.+..+.+|-+||+.|-
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999994
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.011 Score=64.77 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=47.3
Q ss_pred HHHHhhhcCCCeEEEEecc----cccccCCCCCcCEEEecCC------CC------ChhHHHHHhhhcccCCCCCeEEEe
Q 011149 127 ERTLNGFRQGKFTVLVATD----VAARGLDIPNVDLIIHYEL------PN------DPETFVHRSGRTGRAGKEGTAILM 190 (492)
Q Consensus 127 ~~~~~~F~~g~~~iLVaT~----~~~~Gidi~~v~~VI~~~~------P~------~~~~y~qr~GR~gR~g~~g~~i~l 190 (492)
+.+++.|.. +.+|||+|. +++ +++++|+..|. |. ....+.|-+||+||..+.|.+++.
T Consensus 462 d~~l~~~~~-~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq 535 (665)
T PRK14873 462 DQVVDTVDA-GPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVV 535 (665)
T ss_pred HHHHHhhcc-CCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEE
Confidence 457888874 899999999 555 36677765442 31 234457889999999899999988
Q ss_pred cChhhHHHHHHH
Q 011149 191 FTSSQRRTVRSL 202 (492)
Q Consensus 191 ~~~~e~~~~~~l 202 (492)
..+ +...++.+
T Consensus 536 ~~p-~~~~~~~l 546 (665)
T PRK14873 536 AES-SLPTVQAL 546 (665)
T ss_pred eCC-CCHHHHHH
Confidence 644 33344443
|
|
| >PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00041 Score=44.00 Aligned_cols=17 Identities=59% Similarity=1.040 Sum_probs=11.5
Q ss_pred CCcccCCCCCcccCCCC
Q 011149 475 GACFNCGKSGHRASECP 491 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp 491 (492)
+.|++|++.-|||+||-
T Consensus 3 ~~CprC~kg~Hwa~~C~ 19 (36)
T PF14787_consen 3 GLCPRCGKGFHWASECR 19 (36)
T ss_dssp -C-TTTSSSCS-TTT--
T ss_pred ccCcccCCCcchhhhhh
Confidence 34999999999999994
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0025 Score=72.21 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=50.4
Q ss_pred cCCeEEEEeCChHHHH-HHHHHHHcccceeeecCCCCHHHHHHHHhhhcC--CCeEEEEecc
Q 011149 87 KGGKTIVFTQTKRDAD-EVSLALTSIIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATD 145 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~-~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~--g~~~iLVaT~ 145 (492)
....+||.+|+++.+. ++...+...+.+..+.++++..++.++++.+.. +.++||++|+
T Consensus 499 ~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 499 CPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 3568999999999997 555555568899999999999999999999877 8899999998
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.015 Score=58.43 Aligned_cols=232 Identities=13% Similarity=0.140 Sum_probs=123.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v~ 157 (492)
-+++|..+|++.+.+....+++ .+.+..+.|+-+.+++-..+. .+-+|++||+ .++.-+++..|.
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~----~npDii~ATpgr~~h~~vem~l~l~sve 166 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLN----ENPDIIIATPGRLLHLGVEMTLTLSSVE 166 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhc----cCCCEEEecCceeeeeehheecccccee
Confidence 4899999999999988777764 244555555534444443333 2567999998 456668888999
Q ss_pred EEEe------cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHH-------
Q 011149 158 LIIH------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES------- 224 (492)
Q Consensus 158 ~VI~------~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~------- 224 (492)
+||. |.+-+ .++..+-+-|. ......++++.+-.+.+-...+.-..++..+.+....++-+.
T Consensus 167 yVVfdEadrlfemgf-qeql~e~l~rl----~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~ 241 (529)
T KOG0337|consen 167 YVVFDEADRLFEMGF-QEQLHEILSRL----PESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFR 241 (529)
T ss_pred eeeehhhhHHHhhhh-HHHHHHHHHhC----CCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheee
Confidence 9984 22211 12222333332 233467777766655555544443333333332222221111
Q ss_pred -----HHHHHHHHhccCC-ccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCC---------CCCCCcccccCCCCeEEE
Q 011149 225 -----SAEQVVATLNGVH-PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS---------RPPSSRSLINHEQGWVTL 289 (492)
Q Consensus 225 -----~~~~~~~~l~~~~-~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~---------~~~~~~~l~~~~~~~~~~ 289 (492)
....++..+...- +.....|..+ ..-..+...+++..++. +..+...+..+..+...+
T Consensus 242 ~~~a~K~aaLl~il~~~~~~~~t~vf~~t-------k~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~ 314 (529)
T KOG0337|consen 242 VRKAEKEAALLSILGGRIKDKQTIVFVAT-------KHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSI 314 (529)
T ss_pred eccHHHHHHHHHHHhccccccceeEEecc-------cchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccce
Confidence 1111111111111 1111111111 00112223333333321 112222345567777888
Q ss_pred EEeecCccccCCCChhHHHHHHhhhCCCCcC----ccccEEEeecCccceeEe
Q 011149 290 QLTRDSAFSRGFMSARSVMGFLSDVYPTAAD----EIGKIHIIADDRVQGAVF 338 (492)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~----~ig~i~~~~~~~~~gs~f 338 (492)
++.++. +++|+++..+..+||++.|-..+ .+|+..+....+.+.++|
T Consensus 315 lvvTdv--aaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V 365 (529)
T KOG0337|consen 315 LVVTDV--AARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLV 365 (529)
T ss_pred EEEehh--hhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEE
Confidence 888988 89999999999999999875544 378877766555444554
|
|
| >smart00343 ZnF_C2HC zinc finger | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00051 Score=41.26 Aligned_cols=15 Identities=67% Similarity=1.688 Sum_probs=14.7
Q ss_pred cccCCCCCcccCCCC
Q 011149 477 CFNCGKSGHRASECP 491 (492)
Q Consensus 477 c~~cg~~gh~a~~cp 491 (492)
||+|++.||++++||
T Consensus 2 C~~CG~~GH~~~~C~ 16 (26)
T smart00343 2 CYNCGKEGHIARDCP 16 (26)
T ss_pred CccCCCCCcchhhCC
Confidence 999999999999998
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0058 Score=59.16 Aligned_cols=79 Identities=22% Similarity=0.376 Sum_probs=59.8
Q ss_pred HHHhhhcCCCeEEEEecccccccCCCCC--------cCEEEecCCCCChhHHHHHhhhcccCCCC-CeEEEe-cC--hhh
Q 011149 128 RTLNGFRQGKFTVLVATDVAARGLDIPN--------VDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAILM-FT--SSQ 195 (492)
Q Consensus 128 ~~~~~F~~g~~~iLVaT~~~~~Gidi~~--------v~~VI~~~~P~~~~~y~qr~GR~gR~g~~-g~~i~l-~~--~~e 195 (492)
...++|.+|+..|+|.|++++.||.+.. -.+-|.+.+||+.+..+|..||+.|.+.. .-.|.+ ++ +-|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567999999999999999999998853 23567889999999999999999998843 333443 33 236
Q ss_pred HHHHHHHHHHh
Q 011149 196 RRTVRSLERDV 206 (492)
Q Consensus 196 ~~~~~~l~~~~ 206 (492)
.++...+.+.+
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0014 Score=71.46 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=52.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
....+||.+|+++.+.+....|.. ++.+..+++.++..++..+++..+.+.+++|++|+
T Consensus 64 ~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 64 LDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 457899999999999988888875 68888999999999999999999999999999986
|
|
| >COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0022 Score=57.58 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC-CCCCCcccCCCCCcccCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDR-SFGGACFNCGKSGHRASECP 491 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~c~~cg~~gh~a~~cp 491 (492)
--|+.||+.||.+++|. +.......|+.|+...+..+..-..+...... .+.+ .--..||+|+-.+|++.||+
T Consensus 98 ~~C~~Cg~~GH~~~dC~-P~~~~~~~C~~C~s~~H~s~~Cp~~~k~y~~~--~~~~~~~~~~cy~c~~~~H~~~dc~ 171 (190)
T COG5082 98 KKCYNCGETGHLSRDCN-PSKDQQKSCFDCNSTRHSSEDCPSIWKHYVLN--NGDGHPIKKFCYSCGSAGHFGDDCK 171 (190)
T ss_pred cccccccccCccccccC-cccccCcceeccCCCccccccCcccccccccc--cCCCcceeeeccccCCccccCCCCC
Confidence 35899999999999995 32233346777775433322111000111111 0001 11245999999999999997
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0015 Score=71.12 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=59.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc------ccCCCCCcCEE
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPNVDLI 159 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~------~Gidi~~v~~V 159 (492)
..+.+||.+|++..+++....|.. ++.+..+|+.++..++..+++.+..+.++||+.|+--- .-+...++.+|
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~i 131 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALV 131 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEE
Confidence 457899999999999888888875 78899999999999999999999999999999986321 12333456666
Q ss_pred E
Q 011149 160 I 160 (492)
Q Consensus 160 I 160 (492)
|
T Consensus 132 V 132 (591)
T TIGR01389 132 A 132 (591)
T ss_pred E
Confidence 6
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0015 Score=67.59 Aligned_cols=240 Identities=12% Similarity=0.127 Sum_probs=113.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidi~~v 156 (492)
..++||++||++.+.++.+.+... ..+..+.|+....+.. +.+.+ ..+|+|+|+-. ...+.+.++
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~l~~i 171 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDI---NKLKA-GVHMVVGTPGRVYDMIDKRHLRVDDL 171 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHH---HHHcC-CCCEEEECcHHHHHHHHhCCcccccc
Confidence 457999999999999998877642 3455667776654433 33333 35799999722 234567788
Q ss_pred CEEEecCCCCC-hhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCC----HHH---------HH
Q 011149 157 DLIIHYELPND-PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV----VED---------VL 222 (492)
Q Consensus 157 ~~VI~~~~P~~-~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~----~~~---------~~ 222 (492)
++||.=+.-.- ...|...+-..-+.-.....+++++.+-...+..+..........+..+. .+. ..
T Consensus 172 ~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (401)
T PTZ00424 172 KLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKE 251 (401)
T ss_pred cEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChH
Confidence 88874221100 00111111111111123345555555433333333333322221111100 000 00
Q ss_pred HHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc--------CCCCCCCCcccccCCCCeEEEEEeec
Q 011149 223 ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS--------GFSRPPSSRSLINHEQGWVTLQLTRD 294 (492)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~ 294 (492)
+.....+...+..........|..+.+. .+.++..|.... ++++..+..-+..++.|.+.++++++
T Consensus 252 ~~~~~~l~~~~~~~~~~~~ivF~~t~~~------~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~ 325 (401)
T PTZ00424 252 EWKFDTLCDLYETLTITQAIIYCNTRRK------VDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD 325 (401)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecCcHH------HHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc
Confidence 1111122222222221112222221110 111222221110 01111111223345678889999998
Q ss_pred CccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEee
Q 011149 295 SAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFD 339 (492)
Q Consensus 295 ~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fd 339 (492)
. ...|+|..++..+|+...|....+ +||..+....+...++++
T Consensus 326 ~--l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~ 372 (401)
T PTZ00424 326 L--LARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVT 372 (401)
T ss_pred c--ccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEc
Confidence 7 688999999998888887765433 777777655443334443
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0036 Score=60.44 Aligned_cols=249 Identities=14% Similarity=0.126 Sum_probs=137.6
Q ss_pred CeEEEEeCChHHHHHHHHHH---Hc--ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccccC-CCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLAL---TS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL-DIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l---~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~Gi-di~~v~ 157 (492)
-++||.++|++.|-+..+.. .+ .+.+.+..|+.+-. +.+++- +..+.++|+|+ .+..|+ |+.++.
T Consensus 154 IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lr--DDI~Rl--~~~VH~~vgTPGRIlDL~~KgVa~ls~c~ 229 (459)
T KOG0326|consen 154 IQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLR--DDIMRL--NQTVHLVVGTPGRILDLAKKGVADLSDCV 229 (459)
T ss_pred eeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccc--cceeee--cCceEEEEcCChhHHHHHhcccccchhce
Confidence 47899999999888766554 44 36778888986543 334332 34789999997 556664 455555
Q ss_pred EEEe--------cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC------CHHH---
Q 011149 158 LIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP------VVED--- 220 (492)
Q Consensus 158 ~VI~--------~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p------~~~~--- 220 (492)
.+|. .++-..++..+.-. .+...+++|+.+-.-.++.+.+....++-.+.+- -...
T Consensus 230 ~lV~DEADKlLs~~F~~~~e~li~~l-------P~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYa 302 (459)
T KOG0326|consen 230 ILVMDEADKLLSVDFQPIVEKLISFL-------PKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYA 302 (459)
T ss_pred EEEechhhhhhchhhhhHHHHHHHhC-------CccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhhee
Confidence 5443 12222334444333 3457788888877777776655544333222111 0000
Q ss_pred -HHHHHHHHHHHHhc-cCCccchh-hhHHH--HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecC
Q 011149 221 -VLESSAEQVVATLN-GVHPESVE-FFTPT--AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDS 295 (492)
Q Consensus 221 -~~~~~~~~~~~~l~-~~~~~~~~-~f~~~--a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 295 (492)
+.+...-..+..|- .+...+.. ++..+ ++-|......-.+.....|.- +.|.-+.|-.-.++.|..+.++.+|.
T Consensus 303 fV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHak-M~Q~hRNrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 303 FVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAK-MAQEHRNRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred eechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHH-HHHhhhhhhhhhhhccccceeeehhh
Confidence 00111111111111 11111111 11111 111111111122222233322 23444555666788899999999986
Q ss_pred ccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHHHHHHHHhh
Q 011149 296 AFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNK 351 (492)
Q Consensus 296 ~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~ 351 (492)
-.+|+|+.-+.-+||++.|..++. |||-..+...+.+..++.-.+...-.-++.
T Consensus 382 --~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~ 439 (459)
T KOG0326|consen 382 --FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQ 439 (459)
T ss_pred --hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHH
Confidence 588999999999999999987775 888877777766666666655544444443
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.00037 Score=71.67 Aligned_cols=237 Identities=13% Similarity=0.145 Sum_probs=123.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cc--cccCCCCCc
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA--ARGLDIPNV 156 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~--~~Gidi~~v 156 (492)
--+||..||++.|.++.+.|.+ .|.+..+-|+..-+. +.-|-..++|||||+ .+ .-.++.+++
T Consensus 142 lGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~-----E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~l 216 (758)
T KOG0343|consen 142 LGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKF-----ELERISQMNILVCTPGRLLQHMDENPNFSTSNL 216 (758)
T ss_pred ceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHH-----HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcc
Confidence 4699999999999999999985 266777777754332 222334689999998 12 234455666
Q ss_pred CEEEe------cC--CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC------CHHHHH
Q 011149 157 DLIIH------YE--LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP------VVEDVL 222 (492)
Q Consensus 157 ~~VI~------~~--~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p------~~~~~~ 222 (492)
.++|. +| +-...+..+--+ .+-...+|++.+....++.|.+....++..+.+- .++...
T Consensus 217 QmLvLDEADR~LDMGFk~tL~~Ii~~l-------P~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~ 289 (758)
T KOG0343|consen 217 QMLVLDEADRMLDMGFKKTLNAIIENL-------PKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQ 289 (758)
T ss_pred eEEEeccHHHHHHHhHHHHHHHHHHhC-------ChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhh
Confidence 66552 11 222222222221 2446788899988888888888765555443222 111111
Q ss_pred --------HHHHHHHHHHhccCCccchhhhHHHHHH------HHhhhCHHHHHHHHHHHcC-CCCCCCCcccccCCCCeE
Q 011149 223 --------ESSAEQVVATLNGVHPESVEFFTPTAQR------LIEEKGTDALAAALAQLSG-FSRPPSSRSLINHEQGWV 287 (492)
Q Consensus 223 --------~~~~~~~~~~l~~~~~~~~~~f~~~a~~------l~~~~~~~~l~~al~~~~~-~~~~~~~~~l~~~~~~~~ 287 (492)
+..+..+..-+..........|..+.++ ++.++.+ -..|++|.| ++|..+...+..+-+...
T Consensus 290 Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrp---g~~l~~L~G~~~Q~~R~ev~~~F~~~~~ 366 (758)
T KOG0343|consen 290 QSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRP---GIPLLALHGTMSQKKRIEVYKKFVRKRA 366 (758)
T ss_pred heEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCC---CCceeeeccchhHHHHHHHHHHHHHhcc
Confidence 2233333333333222222223222111 1111100 001122222 112111111222333345
Q ss_pred EEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH
Q 011149 288 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE 343 (492)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~ 343 (492)
.+++.++. +++|+|-..|..+|-.+.|...+. +||...+...+. ..++=+|.+
T Consensus 367 ~vLF~TDv--~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~-sll~L~psE 423 (758)
T KOG0343|consen 367 VVLFCTDV--AARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGE-SLLMLTPSE 423 (758)
T ss_pred eEEEeehh--hhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCc-eEEEEcchh
Confidence 67888887 788888777776777777655443 788877765442 234444443
|
|
| >KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.00093 Score=63.21 Aligned_cols=17 Identities=53% Similarity=1.402 Sum_probs=15.7
Q ss_pred CcccCCCCCcccCCCCC
Q 011149 476 ACFNCGKSGHRASECPN 492 (492)
Q Consensus 476 ~c~~cg~~gh~a~~cp~ 492 (492)
+||+||++|||+.|||.
T Consensus 162 ~cyrcGkeghwskEcP~ 178 (346)
T KOG0109|consen 162 GCYRCGKEGHWSKECPV 178 (346)
T ss_pred HheeccccccccccCCc
Confidence 39999999999999994
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.013 Score=64.84 Aligned_cols=91 Identities=21% Similarity=0.266 Sum_probs=71.7
Q ss_pred ccHHHHHHHHH-HHHccCCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc
Q 011149 72 TSKRTILSDLI-TVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (492)
Q Consensus 72 ~~k~~~l~~ll-~~~~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~ 148 (492)
..|..+...++ ..+..+.++||.+||++.+.++++.|++ ...+..+||+++..+|.+...++.+++.+|+|+|..+.
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 34655554433 3344567899999999999999999986 35688999999999999999999999999999998543
Q ss_pred ccCCCCCcCEEEecC
Q 011149 149 RGLDIPNVDLIIHYE 163 (492)
Q Consensus 149 ~Gidi~~v~~VI~~~ 163 (492)
. +.+.++.+||.-+
T Consensus 253 ~-~p~~~l~liVvDE 266 (679)
T PRK05580 253 F-LPFKNLGLIIVDE 266 (679)
T ss_pred c-ccccCCCEEEEEC
Confidence 2 5677888888433
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.014 Score=62.24 Aligned_cols=88 Identities=20% Similarity=0.264 Sum_probs=70.3
Q ss_pred cHHHHHHHHHH-HHccCCeEEEEeCChHHHHHHHHHHHcc--cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccc
Q 011149 73 SKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 149 (492)
Q Consensus 73 ~k~~~l~~ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~~~--~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~ 149 (492)
-|.++...++. .+..+.++||.+|++..+.++++.|++. ..+..+|++++..+|.++..+..+|+.+|+|+|..+..
T Consensus 9 GKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf 88 (505)
T TIGR00595 9 GKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF 88 (505)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc
Confidence 45555444443 3345678999999999999999999863 56889999999999999999999999999999986443
Q ss_pred cCCCCCcCEEEe
Q 011149 150 GLDIPNVDLIIH 161 (492)
Q Consensus 150 Gidi~~v~~VI~ 161 (492)
+.++++.+||.
T Consensus 89 -~p~~~l~lIIV 99 (505)
T TIGR00595 89 -LPFKNLGLIIV 99 (505)
T ss_pred -CcccCCCEEEE
Confidence 56778888884
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.042 Score=58.57 Aligned_cols=118 Identities=16% Similarity=0.258 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHHH--ccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcC--CCeEE-EEeccc
Q 011149 73 SKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTV-LVATDV 146 (492)
Q Consensus 73 ~k~~~l~~ll~~~--~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~--g~~~i-LVaT~~ 146 (492)
-|...+..++..+ ....+++|...-.....-+...|.+ ++....+||.+..++|+.+++.|.. +..+| |++=.+
T Consensus 729 ~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 729 CKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred hHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 3444444444333 3446777766655555666667775 5777889999999999999999964 44555 456677
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEe
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (492)
-+.|||+-..+|+|..|+-|++.-=.|.+-|.-|.|.+..+++.
T Consensus 809 GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 88899999999999999999999999999999999977666553
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.014 Score=54.79 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=82.9
Q ss_pred eEEEEeCChHHHHHHHHHHHc---c---cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCcC
Q 011149 90 KTIVFTQTKRDADEVSLALTS---I---IASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (492)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~---~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v~ 157 (492)
.++|.|.|++.|-++.....+ . .++.++.|+++.+.-+++++. --.|+|+|+ +-.+-+++.+|.
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 689999999999999876653 2 568899999998888887776 567999998 445678888888
Q ss_pred EEEecCCCC-----ChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCC
Q 011149 158 LIIHYELPN-----DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217 (492)
Q Consensus 158 ~VI~~~~P~-----~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~ 217 (492)
+.|.-..-. +...-+|-+=| +......+.+++.+-...++-+.+....++.++.+..
T Consensus 188 hFvlDEcdkmle~lDMrRDvQEifr---~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDd 249 (387)
T KOG0329|consen 188 HFVLDECDKMLEQLDMRRDVQEIFR---MTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDD 249 (387)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHhh---cCcccceeeeeeeecchhhHHHHHhhhcCchhhhccc
Confidence 877422211 11222454444 3345566777777666667777776666655444443
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.13 Score=56.48 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCC
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (492)
......|+..+..++++-||+.|...++.+++.... ..++..+++.-+..+ + +. -++++|+|=|+++..|+++
T Consensus 269 ~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 269 TTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSF 342 (824)
T ss_pred hhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEecc
Confidence 344555666666778888999999999999988876 456777777654442 2 22 3478999999999999999
Q ss_pred CCcC--EEEecCCC----CChhHHHHHhhhcccCCCCCeEEEec
Q 011149 154 PNVD--LIIHYELP----NDPETFVHRSGRTGRAGKEGTAILMF 191 (492)
Q Consensus 154 ~~v~--~VI~~~~P----~~~~~y~qr~GR~gR~g~~g~~i~l~ 191 (492)
.... -|.-|=-| .+..+..|++||+-... ....++.+
T Consensus 343 ~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~ 385 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYI 385 (824)
T ss_pred chhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEE
Confidence 7553 23333212 35667899999975543 33444433
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0087 Score=61.72 Aligned_cols=121 Identities=10% Similarity=0.171 Sum_probs=70.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHccc-------ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-------cccccCCCC
Q 011149 89 GKTIVFTQTKRDADEVSLALTSII-------ASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------VAARGLDIP 154 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~~-------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-------~~~~Gidi~ 154 (492)
.-+||.+||++.|.++++.+++.+ +...+-|.-...++ .++|. .++|||+|+ .--..|++.
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEK----ARLRK-GiNILIgTPGRLvDHLknT~~i~~s 286 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEK----ARLRK-GINILIGTPGRLVDHLKNTKSIKFS 286 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHH----HHHhc-CceEEEcCchHHHHHHhccchheee
Confidence 368999999999999999887521 22333333222222 23344 579999998 123356677
Q ss_pred CcCEEEe--------cCCCCChhHHHHHhhhcccCCCC------CeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 155 NVDLIIH--------YELPNDPETFVHRSGRTGRAGKE------GTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 155 ~v~~VI~--------~~~P~~~~~y~qr~GR~gR~g~~------g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
.+.+||. +++-.++...+--++-.-++-.+ -.+-+|++.+-...+.+|......++..+.
T Consensus 287 ~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ 360 (708)
T KOG0348|consen 287 RLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYIS 360 (708)
T ss_pred eeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeee
Confidence 7788772 34455666666555443332222 134456666666666666555444444333
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.026 Score=61.86 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=75.0
Q ss_pred ccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHccc---ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc
Q 011149 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (492)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~~~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (492)
+.|.+++..++... ..++++||.+|....+.++...|+..+ .+..+|+++++.+|.+...+.++|+.+|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 46767666666543 457799999999999999999999754 48899999999999999999999999999999865
Q ss_pred cccCCCCCcCEEEecC
Q 011149 148 ARGLDIPNVDLIIHYE 163 (492)
Q Consensus 148 ~~Gidi~~v~~VI~~~ 163 (492)
. =.-+++..+||..+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 4 35677888888544
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.015 Score=63.71 Aligned_cols=89 Identities=17% Similarity=0.268 Sum_probs=71.1
Q ss_pred cHHHH-HHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 73 SKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 73 ~k~~~-l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
-|..+ +..++..+..+.+++|.+||+..|+++++.+.+ .+.+..+||+++..+|..+++.+.+|+.+|+|+|..
T Consensus 268 GKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ 347 (630)
T TIGR00643 268 GKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHA 347 (630)
T ss_pred cHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHH
Confidence 45433 334455555667999999999999999988874 367899999999999999999999999999999974
Q ss_pred c-cccCCCCCcCEEEe
Q 011149 147 A-ARGLDIPNVDLIIH 161 (492)
Q Consensus 147 ~-~~Gidi~~v~~VI~ 161 (492)
+ ...+.+.++.+||.
T Consensus 348 ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 348 LIQEKVEFKRLALVII 363 (630)
T ss_pred HHhccccccccceEEE
Confidence 4 34567788888874
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.033 Score=56.29 Aligned_cols=108 Identities=14% Similarity=0.183 Sum_probs=65.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccccC--CCC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL--DIP 154 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~Gi--di~ 154 (492)
..++|.+||++.|++++..+.+ .+.+.-+.++|+......++.. .-.|+|+|+ .++.|+ +..
T Consensus 94 ~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d----~pdIvV~TP~~ll~~~~~~~~~~~~ 169 (569)
T KOG0346|consen 94 PSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMD----LPDIVVATPAKLLRHLAAGVLEYLD 169 (569)
T ss_pred ceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHcc----CCCeEEeChHHHHHHHhhccchhhh
Confidence 4689999999999999888764 2456677778887776655554 778999998 345555 333
Q ss_pred CcCEEE--------ecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhC
Q 011149 155 NVDLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (492)
Q Consensus 155 ~v~~VI--------~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (492)
.+.+.| -|+.-.+.....--+ .....-++.+.+-...+..+.+.+-
T Consensus 170 ~l~~LVvDEADLllsfGYeedlk~l~~~L-------Pr~~Q~~LmSATl~dDv~~LKkL~l 223 (569)
T KOG0346|consen 170 SLSFLVVDEADLLLSFGYEEDLKKLRSHL-------PRIYQCFLMSATLSDDVQALKKLFL 223 (569)
T ss_pred heeeEEechhhhhhhcccHHHHHHHHHhC-------CchhhheeehhhhhhHHHHHHHHhc
Confidence 444333 333322222222111 2234455666665566666666543
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0097 Score=66.06 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=38.9
Q ss_pred CeEEEEe-CChHHHHHHHHHHHc---c-------------------------cceeeecCCCCHHHHHHHHhhhcCCCeE
Q 011149 89 GKTIVFT-QTKRDADEVSLALTS---I-------------------------IASEALHGDISQHQRERTLNGFRQGKFT 139 (492)
Q Consensus 89 ~~~iVF~-~t~~~~~~l~~~l~~---~-------------------------~~~~~lhg~~~~~~r~~~~~~F~~g~~~ 139 (492)
.+.|||+ +|++.++++++.+.+ . +.+..++|+.+...+...+.. ...
T Consensus 62 ~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~----~p~ 137 (844)
T TIGR02621 62 PRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPH----RPA 137 (844)
T ss_pred cceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCC----CCc
Confidence 4677776 999999998887753 1 457788999887665544433 568
Q ss_pred EEEecc
Q 011149 140 VLVATD 145 (492)
Q Consensus 140 iLVaT~ 145 (492)
|||+|.
T Consensus 138 IIVgT~ 143 (844)
T TIGR02621 138 VIVGTV 143 (844)
T ss_pred EEEECH
Confidence 999994
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.007 Score=58.75 Aligned_cols=16 Identities=56% Similarity=1.545 Sum_probs=13.3
Q ss_pred cccCCCCCcccCCCCC
Q 011149 477 CFNCGKSGHRASECPN 492 (492)
Q Consensus 477 c~~cg~~gh~a~~cp~ 492 (492)
||+|++.+|+++|||+
T Consensus 167 c~~c~~~~h~~~~C~~ 182 (261)
T KOG4400|consen 167 CFRCGKVGHGSRDCPS 182 (261)
T ss_pred cccCCCcceecccCCc
Confidence 8888888888888884
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0016 Score=67.71 Aligned_cols=246 Identities=14% Similarity=0.197 Sum_probs=141.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccccc---CC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG---LD 152 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G---id 152 (492)
.-+++|..+|++.+.+++..+.+. +.+..++....+.++...+ ..-..+|||.|+ ++..+ ||
T Consensus 209 gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~---~~~k~dili~TP~ri~~~~~~~~~~id 285 (593)
T KOG0344|consen 209 GLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFL---SDEKYDILISTPMRIVGLLGLGKLNID 285 (593)
T ss_pred ceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchh---HHHHHHHHhcCHHHHHHHhcCCCccch
Confidence 358999999999999999888753 2233344333333322211 223567999998 34443 68
Q ss_pred CCCcCEEEe--cCCCCChhHHHHHhhhcccC-CCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHH---HHHH---
Q 011149 153 IPNVDLIIH--YELPNDPETFVHRSGRTGRA-GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE---DVLE--- 223 (492)
Q Consensus 153 i~~v~~VI~--~~~P~~~~~y~qr~GR~gR~-g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~---~~~~--- 223 (492)
+..|.++|. .|.-..++.|+-..-+.--+ -.+-.++-+++.+-...++++.+........+.+...+ +.++
T Consensus 286 l~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~Qel 365 (593)
T KOG0344|consen 286 LSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQEL 365 (593)
T ss_pred hheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhh
Confidence 888888774 22222333332222221110 12445556666665566666666655555444333221 1111
Q ss_pred -------HHHHHHHHHhcc-CCccchhh--hHHHHHHHHhhh-CHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEe
Q 011149 224 -------SSAEQVVATLNG-VHPESVEF--FTPTAQRLIEEK-GTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292 (492)
Q Consensus 224 -------~~~~~~~~~l~~-~~~~~~~~--f~~~a~~l~~~~-~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 292 (492)
..+..+.+.+.. ..+..+.+ -.+.|++|++++ .-+.+....+|.. .++..+...+..++.|-+-+++.
T Consensus 366 vF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e-~~~~qrde~~~~FR~g~IwvLic 444 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGE-RSQKQRDETMERFRIGKIWVLIC 444 (593)
T ss_pred eeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecc-cchhHHHHHHHHHhccCeeEEEe
Confidence 111222222222 22222222 234467777766 3344444444443 33444455667788999999999
Q ss_pred ecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEee
Q 011149 293 RDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFD 339 (492)
Q Consensus 293 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fd 339 (492)
++. -.+|+|-..+.-+|+++.|...-. |||+......+.+.+||.
T Consensus 445 Tdl--l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfyt 493 (593)
T KOG0344|consen 445 TDL--LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYT 493 (593)
T ss_pred hhh--hhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEec
Confidence 997 578999999999999998865543 899888888777778873
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.05 Score=56.27 Aligned_cols=182 Identities=19% Similarity=0.254 Sum_probs=116.9
Q ss_pred CcEEEEeeeCChHHHHHHHHHcCCCc-eEEeeccccc----ccccceEEEE--EEcC-----cccHHHHH-HHHHHHHcc
Q 011149 21 RQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDE----KLAEGIKLYA--ISTT-----ATSKRTIL-SDLITVYAK 87 (492)
Q Consensus 21 ~q~ll~SAT~p~~i~~~~~~~~~~~~-~i~~~~~~~~----~~~~~i~~~~--~~~~-----~~~k~~~l-~~ll~~~~~ 87 (492)
+|+|+||+-..+.+..+...++.+-. .|........ .+...+.|.+ +.+. ...+.... ..|+-.+.+
T Consensus 470 rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k 549 (698)
T KOG2340|consen 470 RQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIK 549 (698)
T ss_pred HHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcc
Confidence 59999999998888888888877532 2221111111 0011111111 1111 11222211 222222211
Q ss_pred --CCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc--cccccCCCCCcCEEEec
Q 011149 88 --GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPNVDLIIHY 162 (492)
Q Consensus 88 --~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~--~~~~Gidi~~v~~VI~~ 162 (492)
..-+|||.|+--+-..|-.++++ .+....+|--.++..-.++-+-|-.|...||+-|. ..-+-.+|..|.-||.|
T Consensus 550 ~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfY 629 (698)
T KOG2340|consen 550 RTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFY 629 (698)
T ss_pred cccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEe
Confidence 23579999999998899888885 55566666666667777778889999999999997 34566789999999999
Q ss_pred CCCCChhHH---HHHhhhcccCC----CCCeEEEecChhhHHHHHHH
Q 011149 163 ELPNDPETF---VHRSGRTGRAG----KEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 163 ~~P~~~~~y---~qr~GR~gR~g----~~g~~i~l~~~~e~~~~~~l 202 (492)
.+|..|.-| +.+.+|+.-.| ..-.|.++|+..+.-.+..+
T Consensus 630 qpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 630 QPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred cCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 999998666 66777765443 33578889988776444443
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.0063 Score=62.22 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=51.4
Q ss_pred cccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCH-HHHHHHHhhc
Q 011149 279 LINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPE-EIAKELLNKQ 352 (492)
Q Consensus 279 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~-~~a~~~i~~~ 352 (492)
+..+..|..++++..|. .++|+|+.++..+||++.|..... +||+.++...+.+.++.+--+ ....++++..
T Consensus 476 l~~f~~g~i~vLIcSD~--laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 476 LEKFAKGDINVLICSDA--LARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred HHHHhcCCceEEEehhh--hhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHh
Confidence 34577899999999997 689999999999999999976554 899888876654334433322 2334455543
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.011 Score=68.89 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=54.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-----cce--eeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccccCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI-----IAS--EALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGLDIP 154 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~--~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~Gidi~ 154 (492)
...++||.+||++.+.++++.++.. +.+ ...|+.++..++.+..+.+.++..+|+|+|+ .+. .+...
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~ 200 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKK 200 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hcccc
Confidence 4578999999999999999998752 233 3346667788888888999988899999996 222 34444
Q ss_pred CcCEEE
Q 011149 155 NVDLII 160 (492)
Q Consensus 155 ~v~~VI 160 (492)
.+++||
T Consensus 201 ~~~~lV 206 (1176)
T PRK09401 201 KFDFVF 206 (1176)
T ss_pred ccCEEE
Confidence 467666
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.026 Score=60.35 Aligned_cols=85 Identities=19% Similarity=0.293 Sum_probs=72.0
Q ss_pred HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-cccc
Q 011149 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARG 150 (492)
Q Consensus 77 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~~G 150 (492)
++..++..+..+.++...+||.-.|++-+..+.+ ++.|..+.|.+...+|.+++++..+|+++|+|.|-+ +...
T Consensus 300 A~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~ 379 (677)
T COG1200 300 ALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK 379 (677)
T ss_pred HHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc
Confidence 3444555666778999999999999988888775 356899999999999999999999999999999974 5667
Q ss_pred CCCCCcCEEEe
Q 011149 151 LDIPNVDLIIH 161 (492)
Q Consensus 151 idi~~v~~VI~ 161 (492)
+++.++-+||.
T Consensus 380 V~F~~LgLVIi 390 (677)
T COG1200 380 VEFHNLGLVII 390 (677)
T ss_pred eeecceeEEEE
Confidence 88988888885
|
|
| >PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.013 Score=31.75 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCCCCCC
Q 011149 417 SSRSWGSDDEDGFSSSR 433 (492)
Q Consensus 417 ~~~~~g~~g~~~~~~~~ 433 (492)
.|++||+.||.+++|+.
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 59999999999999973
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C .... |
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.0033 Score=62.03 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=60.9
Q ss_pred HHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc-----
Q 011149 247 TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----- 321 (492)
Q Consensus 247 ~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----- 321 (492)
+|..|.+++..+....+++|.. +....+..-+..+++|...+++.+.. -++|+|+..+.-++|++.|.....
T Consensus 342 ta~~l~~~m~~~Gh~V~~l~G~-l~~~~R~~ii~~Fr~g~~kVLitTnV--~ARGiDv~qVs~VvNydlP~~~~~~pD~e 418 (477)
T KOG0332|consen 342 TAMWLYEEMRAEGHQVSLLHGD-LTVEQRAAIIDRFREGKEKVLITTNV--CARGIDVAQVSVVVNYDLPVKYTGEPDYE 418 (477)
T ss_pred hHHHHHHHHHhcCceeEEeecc-chhHHHHHHHHHHhcCcceEEEEech--hhcccccceEEEEEecCCccccCCCCCHH
Confidence 3555555554444444444433 22223333345688999999999998 489999999999999999976543
Q ss_pred -----cccEEEeecCccceeEeecC
Q 011149 322 -----IGKIHIIADDRVQGAVFDLP 341 (492)
Q Consensus 322 -----ig~i~~~~~~~~~gs~fdv~ 341 (492)
|||+.++..-+.++.++|..
T Consensus 419 tYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 419 TYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred HHHHHhcccccccccceEEEeeccc
Confidence 78877776655555555553
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.13 Score=44.92 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=35.4
Q ss_pred CCHHHHHHHHhhhcCCC-eEEEEecccccccCCCCCc--CEEEecCCCC
Q 011149 121 ISQHQRERTLNGFRQGK-FTVLVATDVAARGLDIPNV--DLIIHYELPN 166 (492)
Q Consensus 121 ~~~~~r~~~~~~F~~g~-~~iLVaT~~~~~Gidi~~v--~~VI~~~~P~ 166 (492)
....+...+++.|+... ..||++|...++|||+|+- ..||...+|.
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 44556788888998654 3799999889999999964 5788777764
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.089 Score=62.24 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=53.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----------------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV----- 146 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----------------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~----- 146 (492)
.++|+.+|+++.+.++.+.|+. .+.+..+||+.++.+|.+.++. ..+|||+|+-
T Consensus 38 ~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~----ppdILVTTPEsL~~L 113 (1490)
T PRK09751 38 SRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN----PPDILITTPESLYLM 113 (1490)
T ss_pred CEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcC----CCCEEEecHHHHHHH
Confidence 5799999999999998887642 3567889999999999876654 6789999982
Q ss_pred c-ccc-CCCCCcCEEEe
Q 011149 147 A-ARG-LDIPNVDLIIH 161 (492)
Q Consensus 147 ~-~~G-idi~~v~~VI~ 161 (492)
+ .+. ..+.+|++||.
T Consensus 114 Ltsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 114 LTSRARETLRGVETVII 130 (1490)
T ss_pred HhhhhhhhhccCCEEEE
Confidence 2 222 35788998883
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.11 Score=57.94 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=51.9
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc------cceee-ecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI------IASEA-LHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~------~~~~~-lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
+++++++.+||...+.++++.|... +.+.. +|+.|+.+++++++++|.+|+++|||+|..
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 5689999999999999999988742 33322 999999999999999999999999999973
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.1 Score=59.58 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=49.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----------------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-cc--
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AA-- 148 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----------------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~-- 148 (492)
.++|+.+|+++.+.+++..|.. .+.+...||+.++.++.+.++. ..+|||+|+- +.
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~----~p~IlVtTPE~L~~l 160 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKK----PPHILITTPESLAIL 160 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhC----CCCEEEecHHHHHHH
Confidence 3699999999999988765431 2457889999999998877664 5689999982 11
Q ss_pred ---cc--CCCCCcCEEEe
Q 011149 149 ---RG--LDIPNVDLIIH 161 (492)
Q Consensus 149 ---~G--idi~~v~~VI~ 161 (492)
.. -.+.++.+||.
T Consensus 161 l~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 161 LNSPKFREKLRTVKWVIV 178 (876)
T ss_pred hcChhHHHHHhcCCEEEE
Confidence 11 13567888874
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.13 Score=56.68 Aligned_cols=92 Identities=23% Similarity=0.280 Sum_probs=75.5
Q ss_pred cCcccHHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 69 TTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 69 ~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
+.-+.|.++...++.. +..++++||.+|.+....++...++. +.++.++|++|++.+|..+..+.++|+.+|+|.|-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 4445677777776654 45678999999999999999999986 46789999999999999999999999999999997
Q ss_pred cccccCCCCCcCEEEe
Q 011149 146 VAARGLDIPNVDLIIH 161 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~ 161 (492)
.+- =.-++++.+||.
T Consensus 305 SAl-F~Pf~~LGLIIv 319 (730)
T COG1198 305 SAL-FLPFKNLGLIIV 319 (730)
T ss_pred hhh-cCchhhccEEEE
Confidence 543 345678888773
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.15 Score=44.48 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=31.7
Q ss_pred HHHHHHhhhcCCCe---EEEEeccc--ccccCCCCC--cCEEEecCCCC
Q 011149 125 QRERTLNGFRQGKF---TVLVATDV--AARGLDIPN--VDLIIHYELPN 166 (492)
Q Consensus 125 ~r~~~~~~F~~g~~---~iLVaT~~--~~~Gidi~~--v~~VI~~~~P~ 166 (492)
+..++++.|++..- .||+++.- +++|||+|+ +..||...+|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 44677888876433 58888876 999999997 45788877764
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.072 Score=53.04 Aligned_cols=245 Identities=13% Similarity=0.140 Sum_probs=121.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccccCCCC-Cc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGLDIP-NV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~Gidi~-~v 156 (492)
..++||+.||++.+.++...... .+.+..+-|+.........++. -...|+|.|+ .+.++-..+ .+
T Consensus 94 e~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~---~~~hivvGTpgrV~dml~~~~l~~~~i 170 (397)
T KOG0327|consen 94 ETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLK---DKPHIVVGTPGRVFDMLNRGSLSTDGI 170 (397)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhc---cCceeecCCchhHHHhhccccccccce
Confidence 45789999999999888865553 1344444455443322222222 2456777776 333332222 24
Q ss_pred CEEEecC----CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHH
Q 011149 157 DLIIHYE----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232 (492)
Q Consensus 157 ~~VI~~~----~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 232 (492)
.+.+.-. ++....+.++.+=+- -.+-..+++++.+....+..+.+.....+..+.....+-.++....-.+..
T Consensus 171 KmfvlDEaDEmLs~gfkdqI~~if~~---lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v 247 (397)
T KOG0327|consen 171 KMFVLDEADEMLSRGFKDQIYDIFQE---LPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINV 247 (397)
T ss_pred eEEeecchHhhhccchHHHHHHHHHH---cCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeec
Confidence 4444322 345556666665442 233456677777666666666666655554444333221111000000000
Q ss_pred hccCCccchhhhHHHHHHHHh------hhC-HHHHHHHHHHHcC---------CCCCCCCcccccCCCCeEEEEEeecCc
Q 011149 233 LNGVHPESVEFFTPTAQRLIE------EKG-TDALAAALAQLSG---------FSRPPSSRSLINHEQGWVTLQLTRDSA 296 (492)
Q Consensus 233 l~~~~~~~~~~f~~~a~~l~~------~~~-~~~l~~al~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~ 296 (492)
+ .++.++......+++-. ... ...+-..| ...+ +.+..+..-+..++.|..++++.++.
T Consensus 248 ~---k~~k~~~l~dl~~~~~q~~if~nt~r~v~~l~~~L-~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl- 322 (397)
T KOG0327|consen 248 E---KEEKLDTLCDLYRRVTQAVIFCNTRRKVDNLTDKL-RAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDL- 322 (397)
T ss_pred c---ccccccHHHHHHHhhhcceEEecchhhHHHHHHHH-hhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccc-
Confidence 0 01111111111110000 000 01111111 2221 22333333445678899999999998
Q ss_pred cccCCCChhHHHHHHhhhCCCCcCc-cccEEEeecCccceeEeecCHHH
Q 011149 297 FSRGFMSARSVMGFLSDVYPTAADE-IGKIHIIADDRVQGAVFDLPEEI 344 (492)
Q Consensus 297 ~~~~~~~~~~i~~~i~~~~~~~~~~-ig~i~~~~~~~~~gs~fdv~~~~ 344 (492)
.++++++..+..++|++.|...+. |=|+.+...++..|..+..-++.
T Consensus 323 -~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~ 370 (397)
T KOG0327|consen 323 -LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEE 370 (397)
T ss_pred -cccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHh
Confidence 689999999999999999976654 33444444444445555444443
|
|
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.036 Score=65.00 Aligned_cols=94 Identities=21% Similarity=0.379 Sum_probs=77.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCC-----------HHHHHHHHhhhcCCCeEEEEecccccccCCCCC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS--IIASEALHGDIS-----------QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~-----------~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~ 155 (492)
-..|+||+.+..+..+.+.+.+ ...+..+.|.+. +..+.+++..|....+++|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 4569999999999998888875 233333444322 234788999999999999999999999999999
Q ss_pred cCEEEecCCCCChhHHHHHhhhcccCC
Q 011149 156 VDLIIHYELPNDPETFVHRSGRTGRAG 182 (492)
Q Consensus 156 v~~VI~~~~P~~~~~y~qr~GR~gR~g 182 (492)
++.|+.++.|.....|+|..||+-+..
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999986643
|
|
| >KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.45 Score=46.54 Aligned_cols=10 Identities=10% Similarity=0.059 Sum_probs=4.3
Q ss_pred CCCCCCcccC
Q 011149 471 RSFGGACFNC 480 (492)
Q Consensus 471 ~~~~~~c~~c 480 (492)
+|++++-|+-
T Consensus 453 ggggrg~y~~ 462 (465)
T KOG3973|consen 453 GGGGRGGYRG 462 (465)
T ss_pred CCCCCcccCC
Confidence 3344444553
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.52 Score=48.90 Aligned_cols=69 Identities=29% Similarity=0.358 Sum_probs=57.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc--cc---ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS--II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~--~~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v 156 (492)
++++|+..||+-.+.+-+..+.+ .+ .+..|.|..++++|...... .+|+|||+ +.+-=||+.++
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid~~dv 132 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRIDLDDV 132 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccChHHc
Confidence 34799999999999999998886 33 47799999999999987765 57999997 45555899999
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
.++|.
T Consensus 133 ~~lif 137 (542)
T COG1111 133 SLLIF 137 (542)
T ss_pred eEEEe
Confidence 99884
|
|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.25 Score=53.46 Aligned_cols=105 Identities=21% Similarity=0.305 Sum_probs=85.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-c------------------ceeeecCCCCHHHHHHHHhhhcCC---CeEEEEecc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI-I------------------ASEALHGDISQHQRERTLNGFRQG---KFTVLVATD 145 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-~------------------~~~~lhg~~~~~~r~~~~~~F~~g---~~~iLVaT~ 145 (492)
+.++|||.......+.|.+.|.+. + ...-+.|-.+..+|++.+++|.+. ..-+|++|-
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 468999999888888888887642 1 223467788889999999999863 245789999
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecC
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 192 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (492)
.-..|||+-..+-+|.+|.-|++.--.|.+-|+-|.|.+..|+++-.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 99999999888899999999999999999999999998877777533
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.2 Score=60.34 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=52.9
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
+..++||.+||++.+.+++..|.. .+.+..+||+++..++.++++.++++..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999998875 245678999999999999999999999999999984
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.18 Score=59.00 Aligned_cols=59 Identities=19% Similarity=0.380 Sum_probs=50.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-----cc---eeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI-----IA---SEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-----~~---~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
...++||.+||++.|.++++.+... +. +..+||+++..++...++.+.++..+|||+|+
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp 186 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTT 186 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 4578999999999999999888752 22 23589999999999999999998899999998
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.065 Score=54.68 Aligned_cols=42 Identities=24% Similarity=0.461 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
..|..||..||..++|+..- -+| -..|+.||..||+++||+.
T Consensus 262 ~~c~~cg~~~H~q~~cp~r~------------------~~~-----------------~n~c~~cg~~gH~~~dc~~ 303 (554)
T KOG0119|consen 262 RACRNCGSTGHKQYDCPGRI------------------PNT-----------------TNVCKICGPLGHISIDCKV 303 (554)
T ss_pred ccccccCCCccccccCCccc------------------ccc-----------------cccccccCCcccccccCCC
Confidence 57999999999999998430 011 0139999999999999973
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.13 Score=56.62 Aligned_cols=68 Identities=9% Similarity=-0.014 Sum_probs=45.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc--------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~--------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
..+++|-+||++.|.+++..+.+ ...+...+|+++..... ...+ ...|||+|.-+. -.++..+++|
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~---t~~k--~~~Ilv~T~~L~-l~~L~~v~~V 295 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELIN---TNPK--PYGLVFSTHKLT-LNKLFDYGTV 295 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhh---cccC--CCCEEEEeCccc-ccccccCCEE
Confidence 35899999999999998888764 13457789998742211 1112 347999995321 1256678888
Q ss_pred Ee
Q 011149 160 IH 161 (492)
Q Consensus 160 I~ 161 (492)
|.
T Consensus 296 VI 297 (675)
T PHA02653 296 II 297 (675)
T ss_pred Ec
Confidence 84
|
|
| >PF14392 zf-CCHC_4: Zinc knuckle | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.037 Score=38.75 Aligned_cols=16 Identities=56% Similarity=1.547 Sum_probs=15.3
Q ss_pred cccCCCCCcccCCCCC
Q 011149 477 CFNCGKSGHRASECPN 492 (492)
Q Consensus 477 c~~cg~~gh~a~~cp~ 492 (492)
||+||..||.+++||.
T Consensus 34 C~~C~~~gH~~~~C~k 49 (49)
T PF14392_consen 34 CFHCGRIGHSDKECPK 49 (49)
T ss_pred hcCCCCcCcCHhHcCC
Confidence 9999999999999994
|
|
| >PF15288 zf-CCHC_6: Zinc knuckle | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.062 Score=35.42 Aligned_cols=16 Identities=50% Similarity=1.173 Sum_probs=14.3
Q ss_pred CcccCCCCCccc--CCCC
Q 011149 476 ACFNCGKSGHRA--SECP 491 (492)
Q Consensus 476 ~c~~cg~~gh~a--~~cp 491 (492)
.|.+||..||++ +.||
T Consensus 3 kC~~CG~~GH~~t~k~CP 20 (40)
T PF15288_consen 3 KCKNCGAFGHMRTNKRCP 20 (40)
T ss_pred cccccccccccccCccCC
Confidence 499999999998 6788
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.58 Score=53.42 Aligned_cols=88 Identities=17% Similarity=0.288 Sum_probs=71.9
Q ss_pred HHHH-HHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEec-cc
Q 011149 74 KRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVAT-DV 146 (492)
Q Consensus 74 k~~~-l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT-~~ 146 (492)
|.++ +.........+++|.|.+||.-.|++-++.+++. +.+..|..=.+.+++.++++..++|+++|||.| .+
T Consensus 628 KTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrL 707 (1139)
T COG1197 628 KTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRL 707 (1139)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHh
Confidence 4443 3334444456789999999999999999999863 356778888889999999999999999999999 47
Q ss_pred ccccCCCCCcCEEEe
Q 011149 147 AARGLDIPNVDLIIH 161 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~ 161 (492)
+...|-+.++-+||.
T Consensus 708 L~kdv~FkdLGLlII 722 (1139)
T COG1197 708 LSKDVKFKDLGLLII 722 (1139)
T ss_pred hCCCcEEecCCeEEE
Confidence 888888999998885
|
|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.094 Score=49.98 Aligned_cols=18 Identities=44% Similarity=1.289 Sum_probs=16.1
Q ss_pred CCCcccCCCCCcccCCCC
Q 011149 474 GGACFNCGKSGHRASECP 491 (492)
Q Consensus 474 ~~~c~~cg~~gh~a~~cp 491 (492)
|--||+||+.|||-..||
T Consensus 176 gY~CyRCGqkgHwIqnCp 193 (427)
T COG5222 176 GYVCYRCGQKGHWIQNCP 193 (427)
T ss_pred ceeEEecCCCCchhhcCC
Confidence 345999999999999999
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=89.46 E-value=2.1 Score=39.27 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=50.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----c-cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~-~~Gidi~~v 156 (492)
..++||.++|++.+.+++..+.. .+.+..+|++.+..+....++ ....|+|+|+. + ..-.+++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 35899999999999998877753 356778899988766654444 46789999962 2 222567778
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
+++|.
T Consensus 145 ~~lIv 149 (203)
T cd00268 145 KYLVL 149 (203)
T ss_pred CEEEE
Confidence 87773
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=89.18 E-value=2.5 Score=37.27 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=50.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHH-HHHHHHhhhcCCCeEEEEecc------cccccCCCCCc
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQH-QRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~-~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v 156 (492)
.++||.+|+++.++++...+... +.+..+|++.+.. +....+ .+..+|+|+|+ +....+++..+
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~~~ 120 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINISRL 120 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGTTE
T ss_pred ceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccccccccccccc
Confidence 49999999999999999888752 4678889998755 334444 44678999997 22223466777
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
++||.
T Consensus 121 ~~iVi 125 (169)
T PF00270_consen 121 SLIVI 125 (169)
T ss_dssp SEEEE
T ss_pred eeecc
Confidence 87774
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.43 E-value=0.72 Score=50.26 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=45.9
Q ss_pred HhhhcCCCeEEEEecccccccCCCCCcCEEE--------ecCCCCChhHHHHHhhhcccCC
Q 011149 130 LNGFRQGKFTVLVATDVAARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAG 182 (492)
Q Consensus 130 ~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI--------~~~~P~~~~~y~qr~GR~gR~g 182 (492)
-++|.+|+..|-|-+.+++.||.+..-.-|+ -+.+||+.+.-||..|||.|..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSN 910 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSN 910 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhccccccc
Confidence 3589999999999999999999997655444 5789999999999999999976
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.29 E-value=0.17 Score=55.40 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=91.4
Q ss_pred ccHHHHHHHHHHHHc-cC-CeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCe-E-EEEeccc
Q 011149 72 TSKRTILSDLITVYA-KG-GKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF-T-VLVATDV 146 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~-~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~-~-iLVaT~~ 146 (492)
..|...+..+|.... .. .++|||+.-..-+..+...|.. .+....+-|.|+...|.+.+..|..+.. . .|++..+
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 344444444444321 12 3899999988888888777763 5667778899999999999999995432 2 4578889
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEE
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~ 189 (492)
...|+++-...+|+..|+-|++..-.|.+-|+.|.|..-.+.+
T Consensus 601 g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 9999999999999999999999999999999999886554444
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=87.90 E-value=7 Score=44.19 Aligned_cols=70 Identities=26% Similarity=0.397 Sum_probs=53.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc--c---ceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc------ccccCCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI--I---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPN 155 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~--~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidi~~ 155 (492)
...++||.|||+..+++.++.+... + .+..++|+.+..+|.+.... ..|+|+|+- +..-+++.+
T Consensus 57 ~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~iiv~T~~~l~~~l~~~~~~~~~ 131 (773)
T PRK13766 57 KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AKVIVATPQVIENDLIAGRISLED 131 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CCEEEECHHHHHHHHHcCCCChhh
Confidence 4679999999999999988888753 2 67789999999888766543 469999972 234466778
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 132 ~~liVv 137 (773)
T PRK13766 132 VSLLIF 137 (773)
T ss_pred CcEEEE
Confidence 888874
|
|
| >KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.17 E-value=0.62 Score=41.41 Aligned_cols=16 Identities=38% Similarity=1.259 Sum_probs=14.6
Q ss_pred cccCCCCCcccCCCCC
Q 011149 477 CFNCGKSGHRASECPN 492 (492)
Q Consensus 477 c~~cg~~gh~a~~cp~ 492 (492)
||+||+.|||.+.|-+
T Consensus 103 ~~r~G~rg~~~r~~~~ 118 (195)
T KOG0107|consen 103 CYRCGERGHIGRNCKD 118 (195)
T ss_pred cccCCCcccccccccc
Confidence 9999999999999964
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=85.72 E-value=1.5 Score=49.61 Aligned_cols=36 Identities=6% Similarity=0.104 Sum_probs=29.1
Q ss_pred ccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhC
Q 011149 278 SLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVY 315 (492)
Q Consensus 278 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 315 (492)
.+..+..+..+++++++. +..++++.+|..+|+...
T Consensus 257 ~~~~~~~G~rkVlvATnI--AErsLtIp~V~~VID~Gl 292 (812)
T PRK11664 257 AILPAPAGRRKVVLATNI--AETSLTIEGIRLVVDSGL 292 (812)
T ss_pred HhccccCCCeEEEEecch--HHhcccccCceEEEECCC
Confidence 345567788999999998 789999999988887543
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=85.07 E-value=1.3 Score=50.05 Aligned_cols=37 Identities=8% Similarity=0.116 Sum_probs=30.2
Q ss_pred ccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCC
Q 011149 278 SLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP 316 (492)
Q Consensus 278 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 316 (492)
.+..+..+..+++|+++. +..++++.+|..+|+...+
T Consensus 254 ~~~~~~~G~rkVlVATnI--AErgItIp~V~~VID~Gl~ 290 (819)
T TIGR01970 254 AIKPDPQGRRKVVLATNI--AETSLTIEGIRVVIDSGLA 290 (819)
T ss_pred HHhhcccCCeEEEEecch--HhhcccccCceEEEEcCcc
Confidence 455667788899999998 7899999999888876554
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria | Back alignment and domain information |
|---|
Probab=84.89 E-value=6.8 Score=37.66 Aligned_cols=157 Identities=20% Similarity=0.271 Sum_probs=83.4
Q ss_pred CcEEEEeeeCChHH------HHHHHHHcCCCceEEeecccccccccceEEEEEEcCc-ccHHHHHHHHHHHH-ccCCeEE
Q 011149 21 RQSMLFSATMPSWV------KKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLITVY-AKGGKTI 92 (492)
Q Consensus 21 ~q~ll~SAT~p~~i------~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~-~~~~~~i 92 (492)
..+-+++.|++... ++++++|... .|.|..+.... .+....+..++..- .+.-++|
T Consensus 3 ~kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~----------------~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaI 66 (275)
T PF12683_consen 3 YKIGIVTGTVSQSEDEYRGAEELIKKYGDV----------------MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAI 66 (275)
T ss_dssp EEEEEEE--TTT-HHHHHHHHHHHHHHHHH----------------EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEE
T ss_pred eEEEEEeCCcccChHHHHHHHHHHHHhCcc----------------eEEEEeCCCcccchHHHHHHHHHHhccCCCccEE
Confidence 35678888887654 3455666432 23334433332 23444555555432 2456999
Q ss_pred EEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC------CcCEEEecCCC
Q 011149 93 VFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------NVDLIIHYELP 165 (492)
Q Consensus 93 VF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~------~v~~VI~~~~P 165 (492)
||+....-+-...+.+++ .-.+..+-+.+ ++ --.++.. ..+|.+.+|...+|..|+ .....|||.+|
T Consensus 67 Vv~q~vpGt~~af~kIkekRpDIl~ia~~~-~E-Dp~~i~~----~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfp 140 (275)
T PF12683_consen 67 VVSQAVPGTAEAFRKIKEKRPDILLIAGEP-HE-DPEVISS----AADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFP 140 (275)
T ss_dssp EEE-SS---HHHHHHHHHH-TTSEEEESS---S--HHHHHH----HSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEET
T ss_pred EEeCCCcchHHHHHHHHhcCCCeEEEcCCC-cC-CHHHHhh----ccCeEeccchhhccHHHHHHHHHcCCceEEEEech
Confidence 999988877777777764 44555565553 22 2334444 467889999999998875 34678888888
Q ss_pred CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH
Q 011149 166 NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV 218 (492)
Q Consensus 166 ~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~ 218 (492)
.+.. |....=| +..++.-.+.++++|..+..|.+
T Consensus 141 rhms-~~~l~~R------------------r~~M~~~C~~lGi~fv~~taPDP 174 (275)
T PF12683_consen 141 RHMS-YELLARR------------------RDIMEEACKDLGIKFVEVTAPDP 174 (275)
T ss_dssp TGGG-SHHHHHH------------------HHHHHHHHHHCT--EEEEEE---
T ss_pred hhcc-hHHHHHH------------------HHHHHHHHHHcCCeEEEEeCCCC
Confidence 7765 4333322 35677777888999988766653
|
They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A. |
| >PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases | Back alignment and domain information |
|---|
Probab=84.45 E-value=7.6 Score=37.09 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=63.4
Q ss_pred ccceeeecCCCCHHHHHHHHhhhcCCC----eEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcc-cCCCCC
Q 011149 111 IIASEALHGDISQHQRERTLNGFRQGK----FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG-RAGKEG 185 (492)
Q Consensus 111 ~~~~~~lhg~~~~~~r~~~~~~F~~g~----~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~g-R~g~~g 185 (492)
.+.+..++++.+... -.+.++. ..|+|.=+.++||+.++++.+.....-+...++++||.=--| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 377888887654433 3444443 789999999999999999998888888888999999864333 455566
Q ss_pred eEEEecChhhHHHHHHH
Q 011149 186 TAILMFTSSQRRTVRSL 202 (492)
Q Consensus 186 ~~i~l~~~~e~~~~~~l 202 (492)
.|-++.++.-......|
T Consensus 185 l~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHI 201 (239)
T ss_pred ceEEecCHHHHHHHHHH
Confidence 78888877655544444
|
This domain is found associated with a helicase domain of superfamily type II []. |
| >KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.56 E-value=18 Score=32.38 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=32.8
Q ss_pred CeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeec-CccceeEeecCHHHHHHHHhh
Q 011149 285 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIAD-DRVQGAVFDLPEEIAKELLNK 351 (492)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~-~~~~gs~fdv~~~~a~~~i~~ 351 (492)
..++|+|..-. ......+|-.++..+.++.. +.|+-+ .+++++-|+-|.+..+++-.+
T Consensus 9 ~~~kVYVGnL~----~~a~k~eLE~~F~~yG~lrs-----vWvArnPPGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 9 GNTKVYVGNLG----SRATKRELERAFSKYGPLRS-----VWVARNPPGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CCceEEeccCC----CCcchHHHHHHHHhcCccee-----EEEeecCCCceEEeccCcccHHHHHhhc
Confidence 45677775432 34678899888888876544 344332 223445555555554444433
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.36 E-value=11 Score=42.90 Aligned_cols=103 Identities=15% Similarity=0.224 Sum_probs=66.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-ccc----ccCC---
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAA----RGLD--- 152 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-~~~----~Gid--- 152 (492)
..++|++.||+..|+.=.+.|.+ .+.+..++|+.++++|+.+++. ..+||++|+ ++. +..|
T Consensus 115 ~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~----pp~IllTNpdMLh~~llr~~~~~~ 190 (851)
T COG1205 115 SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRN----PPDILLTNPDMLHYLLLRNHDAWL 190 (851)
T ss_pred CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhC----CCCEEEeCHHHHHHHhccCcchHH
Confidence 34779999999887765555543 2568889999999999866555 889999986 221 2211
Q ss_pred --CCCcCEEEe-----cC--CCCChhHHHHHhhhcccCCCCCeEEEecChh
Q 011149 153 --IPNVDLIIH-----YE--LPNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (492)
Q Consensus 153 --i~~v~~VI~-----~~--~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 194 (492)
..++.+||. |. .=.++.-.+-|.-|..|.......++..+.+
T Consensus 191 ~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT 241 (851)
T COG1205 191 WLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSAT 241 (851)
T ss_pred HHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 234566663 22 1245666677777766655445555555543
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=80.35 E-value=3.1 Score=37.15 Aligned_cols=46 Identities=37% Similarity=0.636 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEe
Q 011149 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50 (492)
Q Consensus 5 GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~ 50 (492)
.+.+.+..++..++...+++++|||+++.+...+..++.+...+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 145 GFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred CcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 5678888899988889999999999999999999888886665543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 492 | ||||
| 3i32_A | 300 | Dimeric Structure Of A Hera Helicase Fragment Inclu | 7e-38 | ||
| 3eaq_A | 212 | Novel Dimerization Motif In The Dead Box Rna Helica | 5e-34 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 3e-33 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 6e-32 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 7e-32 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 1e-31 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 1e-31 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 1e-31 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 2e-31 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 9e-31 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 1e-29 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 3e-26 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 8e-25 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 2e-24 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 4e-24 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 9e-24 | ||
| 2jgn_A | 185 | Ddx3 Helicase Domain Length = 185 | 9e-24 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 1e-23 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 3e-23 | ||
| 2hjv_A | 163 | Structure Of The Second Domain (Residues 207-368) O | 2e-22 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 1e-21 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 2e-21 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 2e-20 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 3e-20 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 3e-20 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 7e-20 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 8e-20 | ||
| 2kbf_A | 187 | Solution Structure Of Carboxyl-Terminal Domain Of D | 8e-20 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 9e-20 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 9e-20 | ||
| 3peu_A | 188 | S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To | 2e-19 | ||
| 3gfp_A | 189 | Structure Of The C-Terminal Domain Of The Dead-Box | 3e-19 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 4e-18 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 5e-18 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 5e-18 | ||
| 2p6n_A | 191 | Human Dead-box Rna Helicase Ddx41, Helicase Domain | 2e-17 | ||
| 2wax_A | 193 | Structure Of The Human Ddx6 C-Terminal Domain In Co | 4e-16 | ||
| 2yjt_D | 170 | Crystal Structure Of E. Coli Dead-Box Protein Srmb | 1e-15 | ||
| 2rb4_A | 175 | Crystal Structure Of The Helicase Domain Of Human D | 3e-15 | ||
| 4db4_A | 256 | Mss116p Dead-Box Helicase Domain 2 Bound To A Chima | 4e-15 | ||
| 4db2_C | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 4e-15 | ||
| 4db2_A | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 4e-15 | ||
| 1fuk_A | 165 | Crystal Structure Of The Carboxy Terminal Domain Of | 7e-13 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 2e-12 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 2e-12 | ||
| 1t5i_A | 172 | Crystal Structure Of The C-Terminal Domain Of Uap56 | 9e-12 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 5e-09 | ||
| 2v1x_A | 591 | Crystal Structure Of Human Recq-Like Dna Helicase L | 2e-08 | ||
| 1oyy_A | 523 | Structure Of The Recq Catalytic Core Bound To Atp-G | 3e-08 | ||
| 1oyw_A | 523 | Structure Of The Recq Catalytic Core Length = 523 | 6e-08 | ||
| 1gm5_A | 780 | Structure Of Recg Bound To Three-Way Dna Junction L | 1e-06 | ||
| 4gl2_A | 699 | Structural Basis For Dsrna Duplex Backbone Recognit | 3e-06 | ||
| 2eyq_A | 1151 | Crystal Structure Of Escherichia Coli Transcription | 5e-06 | ||
| 2fwr_A | 472 | Structure Of Archaeoglobus Fulgidis Xpb Length = 47 | 1e-05 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 1e-05 | ||
| 2fzl_A | 219 | Structure Of C-Terminal Domain Of Archaeoglobus Ful | 2e-05 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 4e-05 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 4e-05 | ||
| 3v4r_A | 667 | Crystal Structure Of A Uvrb Dimer-Dna Complex Lengt | 9e-05 | ||
| 2d7d_A | 661 | Structural Insights Into The Cryptic Dna Dependent | 9e-05 | ||
| 1d9x_A | 658 | Crystal Structure Of The Dna Repair Protein Uvrb Le | 1e-04 | ||
| 2fdc_A | 658 | Structural Basis Of Dna Damage Recognition And Proc | 1e-04 | ||
| 1d9z_A | 657 | Crystal Structure Of The Dna Repair Protein Uvrb In | 1e-04 | ||
| 1t5l_A | 658 | Crystal Structure Of The Dna Repair Protein Uvrb Po | 1e-04 | ||
| 4i1s_A | 243 | Melanoma Differentiation Associated Protein-5 Helic | 1e-04 | ||
| 3uwx_B | 683 | Crystal Structure Of Uvra-Uvrb Complex Length = 683 | 1e-04 | ||
| 1d2m_A | 665 | Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleot | 3e-04 | ||
| 1c4o_A | 664 | Crystal Structure Of The Dna Nucleotide Excision Re | 3e-04 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 3e-04 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 4e-04 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 4e-04 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 5e-04 | ||
| 2p6r_A | 702 | Crystal Structure Of Superfamily 2 Helicase Hel308 | 6e-04 |
| >pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 | Back alignment and structure |
|
| >pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 | Back alignment and structure |
|
| >pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 | Back alignment and structure |
|
| >pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 | Back alignment and structure |
|
| >pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 | Back alignment and structure |
|
| >pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 | Back alignment and structure |
|
| >pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 | Back alignment and structure |
|
| >pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase Length = 591 | Back alignment and structure |
|
| >pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 | Back alignment and structure |
|
| >pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 | Back alignment and structure |
|
| >pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction Length = 780 | Back alignment and structure |
|
| >pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 Length = 699 | Back alignment and structure |
|
| >pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair Coupling Factor Length = 1151 | Back alignment and structure |
|
| >pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb Length = 472 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus Xpb Length = 219 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex Length = 667 | Back alignment and structure |
|
| >pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase Activity Of Uvrb Length = 661 | Back alignment and structure |
|
| >pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Length = 658 | Back alignment and structure |
|
| >pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX Length = 658 | Back alignment and structure |
|
| >pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In Complex With Atp Length = 657 | Back alignment and structure |
|
| >pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point Mutant Y96a Revealing A Novel Fold For Domain 2 Length = 658 | Back alignment and structure |
|
| >pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase Domain Complex With Inhibitor Non-structural Protein V Length = 243 | Back alignment and structure |
|
| >pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex Length = 683 | Back alignment and structure |
|
| >pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide Excision Repair Enzyme Length = 665 | Back alignment and structure |
|
| >pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair Enzyme Uvrb From Thermus Thermophilus Length = 664 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 492 | |||
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 100.0 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.97 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.97 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.97 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.97 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.97 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.97 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.97 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.97 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.96 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.96 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.96 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.96 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.96 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.96 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.96 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.95 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.95 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.95 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.95 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.94 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.94 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.94 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.89 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.93 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.92 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.9 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.9 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.89 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.89 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.88 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.88 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.88 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.88 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.87 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.87 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.87 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.87 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.87 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.87 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.87 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.87 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.86 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.86 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.85 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.85 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.85 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.84 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.84 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.84 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.84 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.83 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.83 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.83 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.82 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.81 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.81 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.81 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.8 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.77 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.76 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.76 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.76 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.73 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.62 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.59 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.54 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.47 | |
| 2a51_A | 39 | Nucleocapsid protein; sivlhoest, structure, NCP8, | 98.98 | |
| 1cl4_A | 60 | Protein (GAG polyprotein); nucleocapsid protein, R | 98.92 | |
| 2bl6_A | 37 | Nucleocapsid protein P11; lentivirus, polyprotein, | 98.91 | |
| 2ec7_A | 49 | GAG polyprotein (PR55GAG); nucleocapsid protein, H | 98.84 | |
| 2cqf_A | 63 | RNA-binding protein LIN-28; CCHC zinc-finger, stru | 98.79 | |
| 2e29_A | 92 | ATP-dependent RNA helicase DDX50; ATP binding, hyd | 98.76 | |
| 1a1t_A | 55 | Nucleocapsid protein; stem-loop RNA, viral protein | 98.74 | |
| 2ihx_A | 61 | Nucleocapsid (NC) protein; protein-RNA complex, vi | 98.73 | |
| 1dsq_A | 26 | Nucleic acid binding protein P14; CCHC type zinc f | 98.73 | |
| 2li8_A | 74 | Protein LIN-28 homolog A; zinc finger, micro RNA, | 98.71 | |
| 3nyb_B | 83 | Protein AIR2; polya RNA polymerase, zinc knuckle p | 98.69 | |
| 1a6b_B | 40 | Momulv, zinc finger protein NCP10; nucleocapsid pr | 98.68 | |
| 2lli_A | 124 | Protein AIR2; RNA surveillance, RNA degradation, R | 98.63 | |
| 3ts2_A | 148 | Protein LIN-28 homolog A; microrna biogenesis, pro | 98.58 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 98.51 | |
| 1u6p_A | 56 | GAG polyprotein; MLV, A-minor K-turn, stem loop, b | 98.47 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 98.45 | |
| 1nc8_A | 29 | Nucleocapsid protein; HIV-2, RNA recognition, zinc | 98.29 | |
| 2g0c_A | 76 | ATP-dependent RNA helicase DBPA; RNA recognition m | 98.2 | |
| 2lli_A | 124 | Protein AIR2; RNA surveillance, RNA degradation, R | 98.16 | |
| 2li8_A | 74 | Protein LIN-28 homolog A; zinc finger, micro RNA, | 98.11 | |
| 2ysa_A | 55 | Retinoblastoma-binding protein 6; zinc finger, CCH | 98.1 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 97.89 | |
| 2a51_A | 39 | Nucleocapsid protein; sivlhoest, structure, NCP8, | 97.74 | |
| 2bl6_A | 37 | Nucleocapsid protein P11; lentivirus, polyprotein, | 97.71 | |
| 2cqf_A | 63 | RNA-binding protein LIN-28; CCHC zinc-finger, stru | 97.61 | |
| 2ec7_A | 49 | GAG polyprotein (PR55GAG); nucleocapsid protein, H | 97.61 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 97.59 | |
| 2ihx_A | 61 | Nucleocapsid (NC) protein; protein-RNA complex, vi | 97.57 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 97.53 | |
| 1a1t_A | 55 | Nucleocapsid protein; stem-loop RNA, viral protein | 97.4 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 97.35 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 97.25 | |
| 3ts2_A | 148 | Protein LIN-28 homolog A; microrna biogenesis, pro | 97.24 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 97.24 | |
| 3i31_A | 88 | Heat resistant RNA dependent ATPase; RNA helicase, | 97.08 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 97.05 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 96.74 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 96.69 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 96.65 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 96.46 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 96.4 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 96.3 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 96.22 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 96.19 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 96.15 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 96.13 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 95.94 | |
| 1dsq_A | 26 | Nucleic acid binding protein P14; CCHC type zinc f | 95.9 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 95.89 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 95.72 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 95.46 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 95.15 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 94.9 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 94.88 | |
| 1a6b_B | 40 | Momulv, zinc finger protein NCP10; nucleocapsid pr | 94.85 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 94.23 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 94.18 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 94.17 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 94.12 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 93.85 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 93.79 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 93.23 | |
| 3nyb_B | 83 | Protein AIR2; polya RNA polymerase, zinc knuckle p | 93.17 | |
| 1u6p_A | 56 | GAG polyprotein; MLV, A-minor K-turn, stem loop, b | 93.1 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 92.95 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 92.86 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 92.61 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 92.51 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 92.26 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 91.84 | |
| 1nc8_A | 29 | Nucleocapsid protein; HIV-2, RNA recognition, zinc | 91.67 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 91.44 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 91.23 | |
| 2ysa_A | 55 | Retinoblastoma-binding protein 6; zinc finger, CCH | 89.87 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 89.28 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 89.32 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 88.94 | |
| 2hqh_E | 26 | Restin; beta/BETA structure, zinc finger motif, st | 88.58 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 87.02 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 86.56 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 86.51 | |
| 1cl4_A | 60 | Protein (GAG polyprotein); nucleocapsid protein, R | 85.81 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 84.76 | |
| 2pk2_A | 358 | Cyclin-T1, protein TAT; TAR, twinning, transcripti | 80.49 |
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-43 Score=345.59 Aligned_cols=289 Identities=38% Similarity=0.588 Sum_probs=250.5
Q ss_pred ceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeE
Q 011149 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 139 (492)
Q Consensus 61 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~ 139 (492)
.++++++.++...|.++|.++++... ..++||||+|++.++.+++.|.. .+.+..+||+|++.+|+.+++.|++|+++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 46788999999999999999998774 78999999999999999999985 78999999999999999999999999999
Q ss_pred EEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHH
Q 011149 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219 (492)
Q Consensus 140 iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~ 219 (492)
|||||+++++|||+|++++||+|++|++.+.|+||+||+||.|++|.|++|+++.+...++.+++.++.+++.+.+|+.+
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCcccc
Q 011149 220 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSR 299 (492)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 299 (492)
++.+.....++..+..+..+.+..|.+.+++++++...+.+++||+++.+.+. ..+++++...+|++++++.++.
T Consensus 161 ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~--~~~~l~~~~~~~~~~~~~~g~~--- 235 (300)
T 3i32_A 161 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKATGPRL--- 235 (300)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC--CCBCTTTCCBSCBCEEEECTTC---
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc--CccccccCCCCcEEEEEecCCC---
Confidence 99999999999999888778889999999999999999999999999987765 6788888889999999999872
Q ss_pred CCCChhHHHHHHhhhCCCCcCccccEEEeecCccceeEeecCHHHHHHHHhhcCCCCCceeeeccCCCCCCCC
Q 011149 300 GFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDG 372 (492)
Q Consensus 300 ~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~~~~~~i~~~~~~~lp~~~~~~ 372 (492)
.. |++|+ .|... +. +||+|.+.+++ +|||||++.++ ...++.+++++++|++++.+
T Consensus 236 ~~--~~~~~-~i~~~-~~---~ig~i~~~~~~----~~~dvp~~~~~------~~~~~~~~~~~~~p~~~~~~ 291 (300)
T 3i32_A 236 SL--PRLVA-LLKGQ-GL---EVGKVAEAEGG----FYVDLRPEARP------EVAGLRLEPARRVEGLLEIP 291 (300)
T ss_dssp CH--HHHHH-HHHHT-TC---CCCCEEEETTE----EEECBCSSCCC------CCTTCEEEEC----------
T ss_pred CC--cHHHH-HHHhc-CC---eECcEEEeCCE----EEEEeCHHHcC------cCCCcEEEecccCCCCccCC
Confidence 22 99997 55553 33 89999997765 89999999887 23678999999999999875
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=266.65 Aligned_cols=206 Identities=44% Similarity=0.704 Sum_probs=191.9
Q ss_pred eEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEE
Q 011149 62 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (492)
Q Consensus 62 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~i 140 (492)
+.+.++.++...|..+|.+++... ...++||||+|++.++.+++.|.. .+.+..+||+|++.+|+++++.|++|+++|
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 445677788889999999999876 568999999999999999999985 789999999999999999999999999999
Q ss_pred EEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHH
Q 011149 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (492)
Q Consensus 141 LVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (492)
||||+++++|||+|++++||+|++|++++.|+||+||+||.|++|.+++|+++.+...++.+++.++.+++...+|..++
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~e 164 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEE 164 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHH
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc
Q 011149 221 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268 (492)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~ 268 (492)
+.+.....++..+..........|.+.+++++++.+++++++||++++
T Consensus 165 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~ll 212 (212)
T 3eaq_A 165 VLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLL 212 (212)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhhC
Confidence 999999999999998877777899999999999999999999999873
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=287.31 Aligned_cols=202 Identities=34% Similarity=0.587 Sum_probs=178.7
Q ss_pred CCCCChHHHHHHHHHhC--CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHH
Q 011149 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~--~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (492)
|+++||.+++..|+..+ +.++|+++||||+|+.+..+++.++.++..+.+.. .......+.+.++.+....|...|
T Consensus 215 ~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l 292 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGI--VGGACSDVKQTIYEVNKYAKRSKL 292 (434)
T ss_dssp HTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESS--TTCCCTTEEEEEEECCGGGHHHHH
T ss_pred hhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecc--ccccccccceEEEEeCcHHHHHHH
Confidence 68999999999999985 67899999999999999999999999988776542 233456788888888888898888
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
..++... ..++||||+|++.|+.+++.|.. .+.+..+||++++.+|++++++|++|+.+|||||+++++|||+|+|+
T Consensus 293 ~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 293 IEILSEQ--ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHHHC--CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCC
Confidence 8888764 34599999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChh-hHHHHHHHHHHh
Q 011149 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDV 206 (492)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~ 206 (492)
+||+||+|.+.++|+||+|||||.|++|.+++|+++. +...++.|.+.+
T Consensus 371 ~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l 420 (434)
T 2db3_A 371 HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKIL 420 (434)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999954 444555555544
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=286.02 Aligned_cols=216 Identities=27% Similarity=0.412 Sum_probs=180.6
Q ss_pred CCCCChHHHHHHHHHhCC-------CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeec--ccccccccceEEEEEEcCc
Q 011149 1 MLAVGFEEDVELILENLP-------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTA 71 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-------~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~--~~~~~~~~~i~~~~~~~~~ 71 (492)
|+++||.++++.|+..++ .++|+++||||+|+.+..++..++.++..+.+.. .........+.+.++....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 578999999999998764 3779999999999999999999999887665432 2223344556666655543
Q ss_pred c--cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEE
Q 011149 72 T--SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (492)
Q Consensus 72 ~--~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLV 142 (492)
. .+...+..++..+ ....++||||+|++.|+.+++.|.. .+.+..+||+|++.+|.+++++|++++++|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 2 2333443333332 3467999999999999999999985 57899999999999999999999999999999
Q ss_pred ecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 143 aT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
||+++++|||+|+|++||+|++|.+++.|+||+|||||.|+.|.+++|+.+.|...++.|++.....+.....+
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 420 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKY 420 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEE
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988887765433
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=272.78 Aligned_cols=214 Identities=35% Similarity=0.607 Sum_probs=191.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCccc-HHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~ 79 (492)
|++++|...+..|+..++.+.|+++||||+|+.+.++++.++.+|..+.+. ........+.+++..+.... +...|.
T Consensus 191 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~l~ 268 (410)
T 2j0s_A 191 MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFDTLC 268 (410)
T ss_dssp HTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC--GGGCSCTTEEEEEEEESSTTHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEec--CccccCCCceEEEEEeCcHHhHHHHHH
Confidence 578899999999999999999999999999999999998899888776543 23334556777777665544 888888
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~ 158 (492)
.++... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.++++.|++++.+|||||+++++|||+|++++
T Consensus 269 ~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 269 DLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 347 (410)
T ss_dssp HHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEE
T ss_pred HHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCE
Confidence 888776 457999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCC
Q 011149 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217 (492)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~ 217 (492)
||+|++|++...|+||+||+||.|++|.+++|+++.+...++.+++.+..+++++++..
T Consensus 348 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 348 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp EEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCC
T ss_pred EEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccch
Confidence 99999999999999999999999999999999999999999999999999998876553
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-31 Score=280.75 Aligned_cols=214 Identities=27% Similarity=0.423 Sum_probs=178.7
Q ss_pred CCCCChHHHHHHHHHhCC-------CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeec--ccccccccceEEEEEEcCc
Q 011149 1 MLAVGFEEDVELILENLP-------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTA 71 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-------~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~--~~~~~~~~~i~~~~~~~~~ 71 (492)
|+++||.++++.|+..++ .+.|+++||||+|+.+..++..++.++..+.+.. .........+.+.++....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 578999999999988763 3789999999999999999999998877655432 2223334556666555543
Q ss_pred c-cH-HHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEE
Q 011149 72 T-SK-RTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (492)
Q Consensus 72 ~-~k-~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLV 142 (492)
. .+ ...+..+...+ ....++||||+|++.|+.+++.|.. .+.+..+||+|++.+|.++++.|++++++|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 2 22 23333333332 3567999999999999999999985 57899999999999999999999999999999
Q ss_pred ecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 143 aT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
||+++++|||+|+|++||+|++|.+++.|+||+|||||.|+.|.+++|+.+.+...++.|++.....++...
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~ 469 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 469 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEE
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999888877654
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=266.36 Aligned_cols=206 Identities=39% Similarity=0.601 Sum_probs=179.4
Q ss_pred CCCCChHHHHHHHHHh--CCC--CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHH
Q 011149 1 MLAVGFEEDVELILEN--LPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~--~~~--~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (492)
|++++|...+..|+.. ++. ..|+++||||+|+.+..+++.++.++..+.+. ........+.+.++.+....+..
T Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~ 264 (417)
T 2i4i_A 187 MLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG--RVGSTSENITQKVVWVEESDKRS 264 (417)
T ss_dssp HHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------CCSSEEEEEEECCGGGHHH
T ss_pred hhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC--CCCCCccCceEEEEEeccHhHHH
Confidence 3567899999999985 443 68999999999999999999999988776553 22344567888888888889999
Q ss_pred HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCC
Q 011149 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (492)
Q Consensus 77 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~ 155 (492)
.+.+++.......++||||++++.++.+++.|.+ .+.+..+||+|++++|.+++++|++++.+|||||+++++|||+|+
T Consensus 265 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~ 344 (417)
T 2i4i_A 265 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 344 (417)
T ss_dssp HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCC
T ss_pred HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCccc
Confidence 9988888765678999999999999999999985 789999999999999999999999999999999999999999999
Q ss_pred cCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCC
Q 011149 156 VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 208 (492)
Q Consensus 156 v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~ 208 (492)
+++||+|++|.+...|+||+||+||.|++|.+++|+++.+...++.+++.+..
T Consensus 345 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 345 VKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 397 (417)
T ss_dssp EEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888766643
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=259.99 Aligned_cols=211 Identities=31% Similarity=0.530 Sum_probs=190.7
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHH
Q 011149 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 81 (492)
++.+|...++.|+..++...|+++||||+|..+..+...++.+|..+.+.. ......+.+++..+....|...+..+
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~l~~~ 252 (400)
T 1s2m_A 176 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME---ELTLKGITQYYAFVEERQKLHCLNTL 252 (400)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS---SCBCTTEEEEEEECCGGGHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc---ccccCCceeEEEEechhhHHHHHHHH
Confidence 456788999999999999999999999999999999999998887765432 23456677888888888898888888
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEE
Q 011149 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (492)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI 160 (492)
+... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.++++.|++++.+|||||+++++|+|+|++++||
T Consensus 253 ~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi 331 (400)
T 1s2m_A 253 FSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI 331 (400)
T ss_dssp HHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE
T ss_pred Hhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE
Confidence 8765 557999999999999999999986 78999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
+|++|+++..|+||+||+||.|++|.|++|+++.+...++.|++.++.+++.++..
T Consensus 332 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 332 NFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp ESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred EeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 99999999999999999999999999999999999999999999999998876544
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=258.68 Aligned_cols=215 Identities=31% Similarity=0.480 Sum_probs=183.6
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll 82 (492)
.+|...+..++..++.+.|+++||||+++.+..++..++.++..+.+.. .......+.+.++.+.. ..+...+..++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 261 (412)
T 3fht_A 184 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDTIKQYYVLCSSRDEKFQALCNLY 261 (412)
T ss_dssp TTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCG--GGSSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecc--ccccccCceEEEEEcCChHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999988776542 33345666776666654 46777777777
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.++++.|++++.+|||||+++++|||+|++++||+
T Consensus 262 ~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 340 (412)
T 3fht_A 262 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 340 (412)
T ss_dssp HHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE
T ss_pred hhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE
Confidence 665 457999999999999999999986 789999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhHHHHHhhhcccCCCCCeEEEecChhh-HHHHHHHHHHhCCCceecCCCCHHHH
Q 011149 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVEDV 221 (492)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p~~~~~ 221 (492)
|++|+ +...|+||+||+||.|+.|.+++++++.+ ...++.+++.+...++.+..+..+++
T Consensus 341 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 407 (412)
T 3fht_A 341 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEI 407 (412)
T ss_dssp SSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--------
T ss_pred ECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHHH
Confidence 99994 67899999999999999999999998764 78899999999999998876655443
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=265.88 Aligned_cols=212 Identities=33% Similarity=0.578 Sum_probs=172.9
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcc-cHHHHHHH
Q 011149 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSD 80 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ 80 (492)
++.+|...+..++..++++.|+++||||+|+.+..+++.++.++..+.+. ........+.++++..... .+...+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK--KEELTLEGIRQFYINVEREEWKLDTLCD 273 (414)
T ss_dssp HHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCC--CCCCCTTSCCEEEEECSSSTTHHHHHHH
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEec--CCccCCCCceEEEEEeChHHhHHHHHHH
Confidence 46789999999999999999999999999999999999999988776543 2233445566666666544 48888888
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
++... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.++++.|++++.+|||||+++++|||+|++++|
T Consensus 274 ~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 274 LYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp HHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred HHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEE
Confidence 77655 457999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
|+|++|.+...|+||+||+||.|++|.+++|+++.+...++.+++.+...++.+++.
T Consensus 353 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 353 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp EESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred EEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 999999999999999999999999999999999999999999999999998887544
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=254.19 Aligned_cols=211 Identities=24% Similarity=0.462 Sum_probs=188.0
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 83 (492)
++|...+..++..++...|+++||||+|+.+..++..++.+|..+.+.. ........+.+++..+....+...+..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDD-ETKLTLHGLQQYYVKLKDNEKNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCC-CCCCCCTTCEEEEEECCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecC-ccccCcccceEEEEEcCchhHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999988776542 222334567788888888889988888887
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEec
Q 011149 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 162 (492)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~ 162 (492)
.. ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.++++.|++++.+|||||+++++|+|+|++++||+|
T Consensus 247 ~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~ 325 (391)
T 1xti_A 247 VL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY 325 (391)
T ss_dssp HS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEES
T ss_pred hc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 75 568999999999999999999985 7889999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhhhcccCCCCCeEEEecChh-hHHHHHHHHHHhCCCceecCCC
Q 011149 163 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 163 ~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~~~~p 216 (492)
++|+++..|+||+||+||.|++|.+++++++. +...++.+++.+..+++.++..
T Consensus 326 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 326 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp SCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 99999999999999999999999999999876 5577899999998888776543
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-29 Score=222.92 Aligned_cols=156 Identities=34% Similarity=0.609 Sum_probs=146.6
Q ss_pred cccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCC
Q 011149 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG 136 (492)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g 136 (492)
...+++++++.++...|...|..++... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|..++++|+++
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567899999999999999999999876 557999999999999999999985 78999999999999999999999999
Q ss_pred CeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 137 ~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++|+++.+...++.+++.++.++++++
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887653
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=250.70 Aligned_cols=216 Identities=31% Similarity=0.538 Sum_probs=185.1
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll 82 (492)
.+|...+..++..++.+.|+++||||+++.+..+++.++.++..+.+.. .......+.+.+..+.. ..+...+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (395)
T 3pey_A 161 QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQT--NEVNVDAIKQLYMDCKNEADKFDVLTELY 238 (395)
T ss_dssp TTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCG--GGCSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccc--cccccccccEEEEEcCchHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999998887776542 23334556666666543 45666776666
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.+++++|++++.+|||||+++++|||+|++++||+
T Consensus 239 ~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 317 (395)
T 3pey_A 239 GLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN 317 (395)
T ss_dssp TTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE
T ss_pred Hhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE
Confidence 544 457999999999999999999985 789999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhHHHHHhhhcccCCCCCeEEEecCh-hhHHHHHHHHHHhC-CCceecCCCCHHHHH
Q 011149 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTS-SQRRTVRSLERDVG-CKFEFVSPPVVEDVL 222 (492)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~g~~g~~i~l~~~-~e~~~~~~l~~~~~-~~~~~~~~p~~~~~~ 222 (492)
|++|+ ++..|+||+||+||.|++|.+++++.+ .+...++.+++.+. ..+..++.+..+++.
T Consensus 318 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 386 (395)
T 3pey_A 318 YDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVE 386 (395)
T ss_dssp SSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHHHHH
T ss_pred cCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHHHHH
Confidence 99999 999999999999999999999999986 45678888988888 777777776655543
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-29 Score=250.27 Aligned_cols=205 Identities=36% Similarity=0.599 Sum_probs=184.6
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHH
Q 011149 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 81 (492)
++.+|...+..++..++...|+++||||+|..+..+++.++.++..+... ....+.+.++.+....+...+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~ 233 (367)
T 1hv8_A 160 LNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK------INANIEQSYVEVNENERFEALCRL 233 (367)
T ss_dssp HTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC------SSSSSEEEEEECCGGGHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec------CCCCceEEEEEeChHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999877665432 224566777778888888887777
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEE
Q 011149 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (492)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI 160 (492)
+. ....++||||++++.++.+++.|.. .+.+..+||++++.+|.++++.|++++.+|||||+++++|+|+|++++||
T Consensus 234 l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 234 LK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp HC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred Hh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 65 3567999999999999999999986 78999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
++++|+++.+|+||+||++|.|++|.+++++++.+...++.|++.++.+++.+.
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999999999999999999999999999999999999998887654
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-29 Score=225.28 Aligned_cols=161 Identities=28% Similarity=0.502 Sum_probs=144.7
Q ss_pred cccceEEEEEEcCccc-HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcC
Q 011149 58 LAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 135 (492)
Q Consensus 58 ~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~ 135 (492)
+..++.|+++.++... |...|..++... ...++||||++++.++.++..|.. .+.+..+||+|++.+|.++++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4568899999988765 999988888765 457999999999999999999986 7899999999999999999999999
Q ss_pred CCeEEEEecccccccCCCCCcCEEEecCCC------CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCC
Q 011149 136 GKFTVLVATDVAARGLDIPNVDLIIHYELP------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (492)
Q Consensus 136 g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P------~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (492)
++++|||||+++++|+|+|++++||+||+| .+...|+||+||+||.|++|.+++|+++.+...++.+++.++.+
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred ceecCCCCHH
Q 011149 210 FEFVSPPVVE 219 (492)
Q Consensus 210 ~~~~~~p~~~ 219 (492)
++.++++..+
T Consensus 163 ~~~~~~~~~~ 172 (175)
T 2rb4_A 163 IKQLNAEDMD 172 (175)
T ss_dssp CEEECSSCCC
T ss_pred ccccCCchhc
Confidence 9888776544
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=222.25 Aligned_cols=156 Identities=23% Similarity=0.451 Sum_probs=143.3
Q ss_pred ccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCC
Q 011149 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 137 (492)
Q Consensus 59 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~ 137 (492)
..+++|+++.++...|...|..+++.. +..++||||++++.++.+++.|.. .+.+..+||+|++.+|..+++.|++++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 457889999999999999999999875 557999999999999999999985 789999999999999999999999999
Q ss_pred eEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChh-hHHHHHHHHHHhCCCceecCC
Q 011149 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSP 215 (492)
Q Consensus 138 ~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~~~~ 215 (492)
++|||||+++++|+|+|++++||+||+|++++.|+||+||+||.|++|.+++|+++. +...++.+++.+..+++.++.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 999999999999999999999999999999999999999999999999999999876 567899999999988887643
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-29 Score=228.20 Aligned_cols=166 Identities=27% Similarity=0.405 Sum_probs=131.4
Q ss_pred HHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceee
Q 011149 38 SRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEA 116 (492)
Q Consensus 38 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~ 116 (492)
..+||++|..|.+.. ......++.++++.++...|...|..++... ..++||||++++.++.+++.|.. .+.+..
T Consensus 8 ~~~~~~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 8 SSGVDLGTENLYFQS--MGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp ----------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred cccccCCCEEEEECC--CCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 346899998887642 3345678999999999999999988887653 46899999999999999999985 789999
Q ss_pred ecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChh-h
Q 011149 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-Q 195 (492)
Q Consensus 117 lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e 195 (492)
+||+|++.+|.+++++|++++++|||||+++++|||+|++++||+||+|++++.|+||+||+||.|++|.+++|+++. +
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999976 6
Q ss_pred HHHHHHHHHHhC
Q 011149 196 RRTVRSLERDVG 207 (492)
Q Consensus 196 ~~~~~~l~~~~~ 207 (492)
...++.|++.+.
T Consensus 164 ~~~~~~l~~~l~ 175 (191)
T 2p6n_A 164 ESVLMDLKALLL 175 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777776654
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-30 Score=271.92 Aligned_cols=213 Identities=31% Similarity=0.476 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011149 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (492)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll 82 (492)
.+|...+..|++.++.++|+++||||+|..+..++..++.++..+.+.. .......+.+.++.+.. ..+...|..++
T Consensus 251 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 328 (479)
T 3fmp_B 251 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDTIKQYYVLCSSRDEKFQALCNLY 328 (479)
T ss_dssp TTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------------
T ss_pred CCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccc--cccCcCCceEEEEEeCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999988877642 23334556666655543 45666676666
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 329 ~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 329 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 554 457999999999999999999986 788999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhHHHHHhhhcccCCCCCeEEEecChhh-HHHHHHHHHHhCCCceecCCCCHH
Q 011149 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVE 219 (492)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p~~~ 219 (492)
||+|. +...|+||+||+||.|+.|.+++|+++.+ ...++.|++.+..+++.+.....+
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 472 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 472 (479)
T ss_dssp -----------------------------------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccHH
Confidence 99995 56899999999999999999999998765 778888888888777766554433
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-28 Score=218.84 Aligned_cols=156 Identities=31% Similarity=0.584 Sum_probs=139.3
Q ss_pred cceEEEEEEcCccc-HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCC
Q 011149 60 EGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 137 (492)
Q Consensus 60 ~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~ 137 (492)
.+++|+++.++... |.+.|..++... ...++||||++++.++.++..|.. .+.+..+||+|++.+|.++++.|++++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 35778888887777 999999999876 568999999999999999999985 789999999999999999999999999
Q ss_pred eEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 138 ~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++|+++.+...++.+++.+..+++.++.+
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988877654
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-29 Score=258.59 Aligned_cols=212 Identities=33% Similarity=0.585 Sum_probs=44.8
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcc-cHHHHHHH
Q 011149 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSD 80 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ 80 (492)
++.+|...+..++..+++..|+++||||+|+.+..+...++.+|..+.+.. .......+.+++..+... .+...+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK--DELTLEGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecC--ccccCCCceEEEEEcCchhhHHHHHHH
Confidence 356789999999999999999999999999999999999999888776542 222334455555554443 36677777
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
+++.. ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.++++.|++++.+|||||+++++|+|+|++++|
T Consensus 253 ~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~V 331 (394)
T 1fuu_A 253 LYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 331 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEE
Confidence 77654 457999999999999999999985 7889999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
|+|++|+++..|+||+||+||.|++|.+++++++.+...++.+++.+..+++.++.+
T Consensus 332 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 388 (394)
T 1fuu_A 332 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 388 (394)
T ss_dssp ---------------------------------------------------------
T ss_pred EEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcc
Confidence 999999999999999999999999999999999999999999999888887765443
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-28 Score=221.78 Aligned_cols=153 Identities=40% Similarity=0.564 Sum_probs=127.3
Q ss_pred ccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcC
Q 011149 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 135 (492)
Q Consensus 57 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~ 135 (492)
.+..+|.++++.++...|...|.+++....+..++||||++++.++.++..|.. .+.+..+||+|++.+|.+++++|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 346789999999999999999999998765678999999999999999999985 7899999999999999999999999
Q ss_pred CCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCC
Q 011149 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (492)
Q Consensus 136 g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (492)
++++|||||+++++|+|+|++++||+||+|+++..|+||+||++|.|++|.+++|+++.+...++.+++.+...
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 168 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA 168 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHT
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999988888888776544
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=252.95 Aligned_cols=198 Identities=20% Similarity=0.329 Sum_probs=158.3
Q ss_pred CCCC--hHHHHHH--HHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHH
Q 011149 2 LAVG--FEEDVEL--ILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI 77 (492)
Q Consensus 2 L~~G--F~~~l~~--Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~ 77 (492)
+++| |+.++.. ++....++.|+|+||||+++.+...+..++..+..+.+.. .....++.+.... ....+...
T Consensus 178 s~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~---~~~r~nl~~~v~~-~~~~~~~~ 253 (591)
T 2v1x_A 178 SQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA---SFNRPNLYYEVRQ-KPSNTEDF 253 (591)
T ss_dssp STTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC---CCCCTTEEEEEEE-CCSSHHHH
T ss_pred cccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec---CCCCcccEEEEEe-CCCcHHHH
Confidence 4556 7777655 4544455799999999999999888888888665443332 1123344333332 22333444
Q ss_pred HHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCC
Q 011149 78 LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (492)
Q Consensus 78 l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (492)
+..+++.+. ...++||||+|++.++.+++.|.. ++.+..+|++|++++|.+++++|++++++|||||+++++|||+
T Consensus 254 ~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~ 333 (591)
T 2v1x_A 254 IEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDK 333 (591)
T ss_dssp HHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCC
T ss_pred HHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCc
Confidence 444444442 467999999999999999999985 7899999999999999999999999999999999999999999
Q ss_pred CCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHH
Q 011149 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (492)
Q Consensus 154 ~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (492)
|+|++||+|++|.+++.|+||+||+||.|.++.|++|+++.+...++.+.
T Consensus 334 p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 334 PDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp SCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred ccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877666553
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-27 Score=232.57 Aligned_cols=194 Identities=28% Similarity=0.542 Sum_probs=162.8
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHH
Q 011149 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 81 (492)
++.+|...+..++..++...|+++||||+|+.+.+....++.++..+... .....+.+.++.+....+..+ ..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~ 214 (337)
T 2z0m_A 142 FEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDWRSKV--QA 214 (337)
T ss_dssp HHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSSHHHH--HH
T ss_pred hccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHHHHHH--HH
Confidence 35688999999999999999999999999999999999999887766432 233456666666655444322 22
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
+.. ....++||||++++.++.+++.|. .+..+||+|++.+|.+++++|++++.+|||||+++++|+|+|++++||+
T Consensus 215 ~~~-~~~~~~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 215 LRE-NKDKGVIVFVRTRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp HHT-CCCSSEEEECSCHHHHHHHHTTCT---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE
T ss_pred HHh-CCCCcEEEEEcCHHHHHHHHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE
Confidence 322 356799999999999999998886 5788999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhC
Q 011149 162 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (492)
Q Consensus 162 ~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (492)
|++|+++..|+||+||+||.|++|.+++++. .+...++.+++.++
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred ecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999999999999 78888888876654
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-25 Score=234.14 Aligned_cols=194 Identities=20% Similarity=0.362 Sum_probs=154.2
Q ss_pred CCCC--hHHHHH---HHHHhCCCCCcEEEEeeeCChHHHHHHHHHcC--CCceEEeecccccccccceEEEEEEcCcccH
Q 011149 2 LAVG--FEEDVE---LILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (492)
Q Consensus 2 L~~G--F~~~l~---~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (492)
++.| |+.++. .++..+| +.|+++||||+++.+...+..++. ++..+ +.. ....++.+.. .....+
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~----~~r~~l~~~v--~~~~~~ 223 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS----FDRPNIRYML--MEKFKP 223 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECC----CCCTTEEEEE--EECSSH
T ss_pred CcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCC----CCCCceEEEE--EeCCCH
Confidence 3445 655544 3455554 689999999999887664444443 34322 221 1123443332 233456
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCC
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (492)
...|..++... +..++||||+|++.++.+++.|.. ++.+..+||+|++++|.+++++|++++++|||||+++++|||+
T Consensus 224 ~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~ 302 (523)
T 1oyw_A 224 LDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 302 (523)
T ss_dssp HHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCC
T ss_pred HHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCc
Confidence 66666666554 557999999999999999999985 7899999999999999999999999999999999999999999
Q ss_pred CCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 154 ~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
|+|++||+|++|.+++.|+||+||+||.|.++.+++|+++.+...++.+..
T Consensus 303 p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998877776654
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-28 Score=219.76 Aligned_cols=154 Identities=29% Similarity=0.497 Sum_probs=139.8
Q ss_pred ceEEEEEEcCc-ccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCe
Q 011149 61 GIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (492)
Q Consensus 61 ~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~ 138 (492)
++.++++.++. ..|..+|..++... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|.+++++|+++++
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 46677777777 78999888888764 457999999999999999999985 7889999999999999999999999999
Q ss_pred EEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011149 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (492)
Q Consensus 139 ~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~ 215 (492)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++++++.+...++.+++.+..+++...+
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 99999999999999999999999999999999999999999999999999999999999999998888777665443
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-26 Score=234.19 Aligned_cols=193 Identities=22% Similarity=0.383 Sum_probs=153.6
Q ss_pred CCC-CChHHH-HHHHHHhCC-----------CCCcEEEEeee-CChHHH-HHHHHHcCCCceEEeecccccccccceEEE
Q 011149 1 MLA-VGFEED-VELILENLP-----------PKRQSMLFSAT-MPSWVK-KLSRKYLDNPLNIDLVGNQDEKLAEGIKLY 65 (492)
Q Consensus 1 mL~-~GF~~~-l~~Il~~~~-----------~~~q~ll~SAT-~p~~i~-~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 65 (492)
||+ +||.++ +..|++.+| .+.|+++|||| +|..+. .+.+.++. +.+. ........+.+.
T Consensus 161 ~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~i~~~ 234 (414)
T 3oiy_A 161 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHV 234 (414)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSS--CCCCCCCSEEEE
T ss_pred HHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcC--ccccccccchhe
Confidence 456 899999 899999887 88999999999 676554 33444433 1111 223345567777
Q ss_pred EEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cccee-eecCCCCHHHHHHHHhhhcCCCeEEEEe
Q 011149 66 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 143 (492)
Q Consensus 66 ~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~-~lhg~~~~~~r~~~~~~F~~g~~~iLVa 143 (492)
++.+ .+...|..++... +.++||||++++.|+.+++.|.. .+.+. .+||+ +|+ +++|++|+++||||
T Consensus 235 ~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 235 RISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp EESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 6655 4555666777664 48999999999999999999986 78887 99995 444 99999999999999
Q ss_pred ----cccccccCCCCC-cCEEEecCCC--CChhHHHHHhhhcccCC----CCCeEEEecChhhHHHHHHHHHHhC--CCc
Q 011149 144 ----TDVAARGLDIPN-VDLIIHYELP--NDPETFVHRSGRTGRAG----KEGTAILMFTSSQRRTVRSLERDVG--CKF 210 (492)
Q Consensus 144 ----T~~~~~Gidi~~-v~~VI~~~~P--~~~~~y~qr~GR~gR~g----~~g~~i~l~~~~e~~~~~~l~~~~~--~~~ 210 (492)
|+++++|||+|+ |++||+|++| .++..|+||+||+||.| ++|.+++|+ .+...++.+++.+. .++
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~ 381 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEE 381 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCC
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccc
Confidence 999999999999 9999999999 99999999999999987 589999999 56667778877776 444
Q ss_pred ee
Q 011149 211 EF 212 (492)
Q Consensus 211 ~~ 212 (492)
+.
T Consensus 382 ~~ 383 (414)
T 3oiy_A 382 EI 383 (414)
T ss_dssp CE
T ss_pred cc
Confidence 43
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.7e-26 Score=243.50 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=111.5
Q ss_pred EcCcccHHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 68 STTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 68 ~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
.+....|..+|..++.. +....++||||+|++.++.|+..|.. ++++.+|||++.+.+|..+.++|+.+ .|+||||
T Consensus 411 ~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATd 488 (844)
T 1tf5_A 411 YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATN 488 (844)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEET
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCC
Confidence 34455677777776654 34567899999999999999999996 89999999999999998888888876 5999999
Q ss_pred cccccCCCC--------CcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 146 VAARGLDIP--------NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 146 ~~~~Gidi~--------~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
+++||+||+ ++.+||||++|.+.+.|+||+|||||+|.+|.+++|++..|
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999 78899999999999999999999999999999999998765
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.6e-24 Score=240.53 Aligned_cols=204 Identities=20% Similarity=0.350 Sum_probs=155.3
Q ss_pred CCC-CChHHH-HHHHHHhCC-----------CCCcEEEEeee-CChHHHH-HHHHHcCCCceEEeecccccccccceEEE
Q 011149 1 MLA-VGFEED-VELILENLP-----------PKRQSMLFSAT-MPSWVKK-LSRKYLDNPLNIDLVGNQDEKLAEGIKLY 65 (492)
Q Consensus 1 mL~-~GF~~~-l~~Il~~~~-----------~~~q~ll~SAT-~p~~i~~-~~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 65 (492)
||+ +||.++ ++.|++.+| .+.|+++|||| .|..+.. +.+.++. +.+. .......++.+.
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~--~~~~~~~~i~~~ 291 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHV 291 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCC--BCCCCCCCEEEE
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEec--cCCCCcCCceeE
Confidence 466 999999 999999888 88999999999 6766553 3333333 2222 223345667777
Q ss_pred EEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cccee-eecCCCCHHHHHHHHhhhcCCCeEEEEe
Q 011149 66 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 143 (492)
Q Consensus 66 ~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~-~lhg~~~~~~r~~~~~~F~~g~~~iLVa 143 (492)
++.+ .+...|..++..+ +.++||||++++.++.++..|.. ++.+. .+||+ |.+ +++|++|+++||||
T Consensus 292 ~~~~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVa 360 (1104)
T 4ddu_A 292 RISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIG 360 (1104)
T ss_dssp EESC---CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEE
T ss_pred EEec---CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEE
Confidence 7666 4556667777664 48999999999999999999985 78888 99993 555 99999999999999
Q ss_pred ----cccccccCCCCC-cCEEEecCCCC----------------------------------------------------
Q 011149 144 ----TDVAARGLDIPN-VDLIIHYELPN---------------------------------------------------- 166 (492)
Q Consensus 144 ----T~~~~~Gidi~~-v~~VI~~~~P~---------------------------------------------------- 166 (492)
|+++++|||+|+ |++|||||+|.
T Consensus 361 tas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~ 440 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEK 440 (1104)
T ss_dssp ETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_pred ecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999 99999999998
Q ss_pred --------------------ChhHHHHHhhhcccCC----CCCeEEEecChhhHHHHHHHHHHhC----CCceecCCCCH
Q 011149 167 --------------------DPETFVHRSGRTGRAG----KEGTAILMFTSSQRRTVRSLERDVG----CKFEFVSPPVV 218 (492)
Q Consensus 167 --------------------~~~~y~qr~GR~gR~g----~~g~~i~l~~~~e~~~~~~l~~~~~----~~~~~~~~p~~ 218 (492)
|+.+|+||+|||||.+ .+|.+++++ .+...++.|++.+. .++..+.....
T Consensus 441 i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~~~~~ 518 (1104)
T 4ddu_A 441 VKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANW 518 (1104)
T ss_dssp HHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGGGCCH
T ss_pred HhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhcccccccccccCH
Confidence 8889999999999965 356777777 45566666666654 33333333344
Q ss_pred HHHHH
Q 011149 219 EDVLE 223 (492)
Q Consensus 219 ~~~~~ 223 (492)
+++++
T Consensus 519 ~~~~~ 523 (1104)
T 4ddu_A 519 KELVH 523 (1104)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.9e-24 Score=232.45 Aligned_cols=177 Identities=16% Similarity=0.355 Sum_probs=140.1
Q ss_pred HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHH-HHHHHHHHH--c
Q 011149 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--A 86 (492)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~--~ 86 (492)
++.|+... ++.|+|+||||++.. .+ ..|+.++..+.+... ...++++|...+..++.. .+..++..+ .
T Consensus 231 l~~l~~~~-~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr-----~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~ 301 (773)
T 2xau_A 231 LKQVVKRR-PDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGR-----TYPVELYYTPEFQRDYLDSAIRTVLQIHATE 301 (773)
T ss_dssp HHHHHHHC-TTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCC-----CCCEEEECCSSCCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhC-CCceEEEEeccccHH--HH-HHHhcCCCcccccCc-----ccceEEEEecCCchhHHHHHHHHHHHHHHhc
Confidence 44455444 478999999999643 44 356666665654322 134666666665555443 333444333 2
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc------------ccceeeecCCCCHHHHHHHHhhhc-----CCCeEEEEecccccc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS------------IIASEALHGDISQHQRERTLNGFR-----QGKFTVLVATDVAAR 149 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~------------~~~~~~lhg~~~~~~r~~~~~~F~-----~g~~~iLVaT~~~~~ 149 (492)
..+++||||+++++++.+++.|.. .+.+..+||+|++++|.++++.|+ +|..+|||||+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 468999999999999999999873 467899999999999999999999 999999999999999
Q ss_pred cCCCCCcCEEEecCC------------------CCChhHHHHHhhhcccCCCCCeEEEecChhhH
Q 011149 150 GLDIPNVDLIIHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 150 Gidi~~v~~VI~~~~------------------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
|||||+|++||++++ |.+.++|+||+|||||. .+|.|++|+++.+.
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999888 89999999999999999 79999999987664
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=230.78 Aligned_cols=199 Identities=22% Similarity=0.301 Sum_probs=146.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChH--HHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcc------
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSW--VKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT------ 72 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~--i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~------ 72 (492)
|++++|...++.|+..++++.|+|+||||+|+. +..+...+...+..+...... +..++++++.....
T Consensus 302 l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~v 377 (1108)
T 3l9o_A 302 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVV 377 (1108)
T ss_dssp TTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC----SSCEEEEEEETTSSCCEEEE
T ss_pred ccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEeecCCcceeeee
Confidence 577889999999999999999999999999874 445666666666555333211 12223333221100
Q ss_pred -------------------------------------------cH---HHHHHHHHHHHc--cCCeEEEEeCChHHHHHH
Q 011149 73 -------------------------------------------SK---RTILSDLITVYA--KGGKTIVFTQTKRDADEV 104 (492)
Q Consensus 73 -------------------------------------------~k---~~~l~~ll~~~~--~~~~~iVF~~t~~~~~~l 104 (492)
.+ ...+..++..+. ...++||||++++.|+.+
T Consensus 378 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~l 457 (1108)
T 3l9o_A 378 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 457 (1108)
T ss_dssp ETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHH
Confidence 00 223333444332 346899999999999999
Q ss_pred HHHHHc-cc---------------------------------------ceeeecCCCCHHHHHHHHhhhcCCCeEEEEec
Q 011149 105 SLALTS-II---------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (492)
Q Consensus 105 ~~~l~~-~~---------------------------------------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT 144 (492)
+..|.. .+ .+.++||+|++.+|+.+++.|++|.++|||||
T Consensus 458 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT 537 (1108)
T 3l9o_A 458 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 537 (1108)
T ss_dssp HHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEEC
Confidence 998764 11 17889999999999999999999999999999
Q ss_pred ccccccCCCCCcCEEEecCCCC--------ChhHHHHHhhhcccCC--CCCeEEEecChh-hHHHHHHHH
Q 011149 145 DVAARGLDIPNVDLIIHYELPN--------DPETFVHRSGRTGRAG--KEGTAILMFTSS-QRRTVRSLE 203 (492)
Q Consensus 145 ~~~~~Gidi~~v~~VI~~~~P~--------~~~~y~qr~GR~gR~g--~~g~~i~l~~~~-e~~~~~~l~ 203 (492)
+++++|||+|++++||+++.|+ ++.+|+||+|||||.| ..|.|++++.+. +...++.+.
T Consensus 538 ~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~ 607 (1108)
T 3l9o_A 538 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 607 (1108)
T ss_dssp SCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHH
T ss_pred cHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHh
Confidence 9999999999999999887643 6677999999999999 688999998765 444455543
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-24 Score=228.58 Aligned_cols=179 Identities=15% Similarity=0.184 Sum_probs=141.0
Q ss_pred CCCChHHHHHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHH
Q 011149 2 LAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~~-~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (492)
++++|..++..|++.++ .+.|+|+||||+|..+..+++ .++..+.+... . +......++..
T Consensus 289 ~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~----~-----------~~~~~~~ll~~ 350 (618)
T 2whx_A 289 TDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE----I-----------PERSWNTGFDW 350 (618)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC----C-----------CSSCCSSSCHH
T ss_pred CCccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc----C-----------CHHHHHHHHHH
Confidence 47889999999998886 689999999999887554322 23444433211 0 00111111222
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEE
Q 011149 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (492)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~V 159 (492)
+. . ...++||||+|++.|+.+++.|.. .+.+..+|++ +|++++++|++|+.+||||||++++|||+| |++|
T Consensus 351 l~-~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~V 422 (618)
T 2whx_A 351 IT-D--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRV 422 (618)
T ss_dssp HH-H--CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HH-h--CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEE
Confidence 22 2 357999999999999999999985 7889999985 788899999999999999999999999997 9988
Q ss_pred --------------------EecCCCCChhHHHHHhhhcccCC-CCCeEEEecC---hhhHHHHHHHHHHh
Q 011149 160 --------------------IHYELPNDPETFVHRSGRTGRAG-KEGTAILMFT---SSQRRTVRSLERDV 206 (492)
Q Consensus 160 --------------------I~~~~P~~~~~y~qr~GR~gR~g-~~g~~i~l~~---~~e~~~~~~l~~~~ 206 (492)
|+|++|.+.++|+||+|||||.| ++|.+++|++ +.+...++.+++.+
T Consensus 423 Id~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 423 IDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred EECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 77888999999999999999996 5899999997 77777788887765
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-23 Score=221.20 Aligned_cols=187 Identities=22% Similarity=0.284 Sum_probs=140.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCc--EEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHH
Q 011149 1 MLAVGFEEDVELILENLPPKRQ--SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q--~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (492)
|++++|..++..|++.++...| +++||||+|..+. ...+....+.. . ....+..+ .....
T Consensus 329 ~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~-~---~~~~i~~~----~~~~~---- 390 (666)
T 3o8b_A 329 STDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPHPNIEEVAL-S---NTGEIPFY----GKAIP---- 390 (666)
T ss_dssp CCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEEC-B---SCSSEEET----TEEEC----
T ss_pred hcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------cCCcceEEEee-c---ccchhHHH----Hhhhh----
Confidence 7899999999999999998877 6777999987422 12222222110 0 01111111 00000
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcC
Q 011149 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (492)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~ 157 (492)
+. .....++||||+|++.++.+++.|.+ .+.+..+||+|++++ |+++..+||||||++++|||+| |+
T Consensus 391 ---l~-~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~ 458 (666)
T 3o8b_A 391 ---IE-AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FD 458 (666)
T ss_dssp ---GG-GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BS
T ss_pred ---hh-hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-Cc
Confidence 11 12468999999999999999999986 789999999999874 4556669999999999999997 99
Q ss_pred EEE----------ecC-----------CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHH--H--HHHHHHhCCCcee
Q 011149 158 LII----------HYE-----------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT--V--RSLERDVGCKFEF 212 (492)
Q Consensus 158 ~VI----------~~~-----------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~--~--~~l~~~~~~~~~~ 212 (492)
+|| ||| +|.+.++|+||+||+|| +++|. ++|+++.+... + +.+++..+..+++
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~ 536 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAW 536 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHT
T ss_pred EEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCccc
Confidence 988 777 89999999999999999 99999 99998877554 3 7777777777777
Q ss_pred cCCCCHH
Q 011149 213 VSPPVVE 219 (492)
Q Consensus 213 ~~~p~~~ 219 (492)
..+|..+
T Consensus 537 ~~l~~~~ 543 (666)
T 3o8b_A 537 YELTPAE 543 (666)
T ss_dssp SCCCHHH
T ss_pred ccCCchH
Confidence 7776543
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=219.89 Aligned_cols=198 Identities=22% Similarity=0.316 Sum_probs=146.0
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHH--HHHHHHcCCCceEEeecccccccccceEEEEEEcC--------
Q 011149 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVK--KLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-------- 70 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~--~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-------- 70 (492)
|+++++...++.++..+|.+.|+|+||||+|+... .........+..+...... +..++++++...
T Consensus 204 l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~~ 279 (1010)
T 2xgj_A 204 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVV 279 (1010)
T ss_dssp GGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC----SSCEEEEEEETTSSCCEEEE
T ss_pred hcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEEecCCcceeeee
Confidence 45677788889999999999999999999987532 2232333445544332111 122333333211
Q ss_pred -ccc-----------------------------------H--------HHHHHHHHHHHc--cCCeEEEEeCChHHHHHH
Q 011149 71 -ATS-----------------------------------K--------RTILSDLITVYA--KGGKTIVFTQTKRDADEV 104 (492)
Q Consensus 71 -~~~-----------------------------------k--------~~~l~~ll~~~~--~~~~~iVF~~t~~~~~~l 104 (492)
... | ...+..++..+. ...++||||+|++.|+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~l 359 (1010)
T 2xgj_A 280 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 359 (1010)
T ss_dssp CTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHH
Confidence 000 1 122333443332 335899999999999999
Q ss_pred HHHHHc-cc---------------------------------------ceeeecCCCCHHHHHHHHhhhcCCCeEEEEec
Q 011149 105 SLALTS-II---------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (492)
Q Consensus 105 ~~~l~~-~~---------------------------------------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT 144 (492)
+..|.. .+ .+..+||+|++.+|+.+++.|++|.++|||||
T Consensus 360 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT 439 (1010)
T 2xgj_A 360 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 439 (1010)
T ss_dssp HHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 988864 21 26789999999999999999999999999999
Q ss_pred ccccccCCCCCcCEEEe----cCC----CCChhHHHHHhhhcccCCC--CCeEEEecChh-hHHHHHHH
Q 011149 145 DVAARGLDIPNVDLIIH----YEL----PNDPETFVHRSGRTGRAGK--EGTAILMFTSS-QRRTVRSL 202 (492)
Q Consensus 145 ~~~~~Gidi~~v~~VI~----~~~----P~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~-e~~~~~~l 202 (492)
+++++|||+|++++||+ ||. |.++..|+||+||+||.|. .|.|++++++. +...++.+
T Consensus 440 ~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 440 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp GGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred hHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 99999999999999999 999 8999999999999999996 59999999865 55555555
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-22 Score=217.52 Aligned_cols=186 Identities=23% Similarity=0.373 Sum_probs=136.6
Q ss_pred CCChHHHHHHHHHhC---CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeeccccccccc----ceEEEEEEcC-----
Q 011149 3 AVGFEEDVELILENL---PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE----GIKLYAISTT----- 70 (492)
Q Consensus 3 ~~GF~~~l~~Il~~~---~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~----~i~~~~~~~~----- 70 (492)
+.++...++.|+..+ +++.|+|+||||+|+ ..++++ |+..+ .+....... .... .....+....
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~r~~-~l~~~~~~~~~~~~~~~~~~~~~ 227 (702)
T 2p6r_A 152 SEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDAD-YYVSDWRPV-PLVEGVLCEGTLELFDGAFSTSR 227 (702)
T ss_dssp CTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCE-EEECCCCSS-CEEEEEECSSEEEEEETTEEEEE
T ss_pred CCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCC-cccCCCCCc-cceEEEeeCCeeeccCcchhhhh
Confidence 446667777776665 578999999999986 455554 55422 222111000 0000 0001111100
Q ss_pred cccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-------------------------------cceeeecC
Q 011149 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------IASEALHG 119 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-------------------------------~~~~~lhg 119 (492)
...+...+.++ +.+..++||||++++.++.++..|... ..+..+|+
T Consensus 228 ~~~~~~~~~~~---~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~ 304 (702)
T 2p6r_A 228 RVKFEELVEEC---VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHA 304 (702)
T ss_dssp ECCHHHHHHHH---HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECT
T ss_pred hhhHHHHHHHH---HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecC
Confidence 00134444333 346789999999999999999988642 25788999
Q ss_pred CCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe----cC---CCCChhHHHHHhhhcccCC--CCCeEEEe
Q 011149 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE---LPNDPETFVHRSGRTGRAG--KEGTAILM 190 (492)
Q Consensus 120 ~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----~~---~P~~~~~y~qr~GR~gR~g--~~g~~i~l 190 (492)
+|++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||+||.| ..|.|+++
T Consensus 305 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 384 (702)
T 2p6r_A 305 GLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIII 384 (702)
T ss_dssp TSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999998 66 7899999999999999988 57999999
Q ss_pred cChhh
Q 011149 191 FTSSQ 195 (492)
Q Consensus 191 ~~~~e 195 (492)
+++.+
T Consensus 385 ~~~~~ 389 (702)
T 2p6r_A 385 VGKRD 389 (702)
T ss_dssp CCGGG
T ss_pred ecCcc
Confidence 99877
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-23 Score=223.46 Aligned_cols=127 Identities=24% Similarity=0.235 Sum_probs=113.0
Q ss_pred EEcCcccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEec
Q 011149 67 ISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (492)
Q Consensus 67 ~~~~~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT 144 (492)
+.+....|..+|..++... ....++||||+|++.++.|+..|.+ ++++.+||+++.+.++..+.++|+.| .|+|||
T Consensus 419 v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIAT 496 (853)
T 2fsf_A 419 VYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIAT 496 (853)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEE
T ss_pred EEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEec
Confidence 3445567888887777543 4567899999999999999999985 89999999999999999999999988 599999
Q ss_pred ccccccCCCCCc-------------------------------------CEEEecCCCCChhHHHHHhhhcccCCCCCeE
Q 011149 145 DVAARGLDIPNV-------------------------------------DLIIHYELPNDPETFVHRSGRTGRAGKEGTA 187 (492)
Q Consensus 145 ~~~~~Gidi~~v-------------------------------------~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~ 187 (492)
|+|+||+||+.. .|||+|++|.+...|+||+|||||+|.+|.+
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999973 5999999999999999999999999999999
Q ss_pred EEecChhh
Q 011149 188 ILMFTSSQ 195 (492)
Q Consensus 188 i~l~~~~e 195 (492)
++|++..|
T Consensus 577 ~~fls~eD 584 (853)
T 2fsf_A 577 RFYLSMED 584 (853)
T ss_dssp EEEEETTS
T ss_pred EEEecccH
Confidence 99998766
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-24 Score=220.55 Aligned_cols=177 Identities=19% Similarity=0.200 Sum_probs=123.2
Q ss_pred CChHHHHHHHHHhC-CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHH
Q 011149 4 VGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (492)
Q Consensus 4 ~GF~~~l~~Il~~~-~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 82 (492)
.+|...+..+...+ +.+.|+++||||+|+.+..++. .+..+... ...++...+..++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~~~~~~~~l~ 174 (440)
T 1yks_A 113 PASIAARGWAAHRARANESATILMTATPPGTSDEFPH----SNGEIEDV--------------QTDIPSEPWNTGHDWIL 174 (440)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC----CSSCEEEE--------------ECCCCSSCCSSSCHHHH
T ss_pred cchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh----cCCCeeEe--------------eeccChHHHHHHHHHHH
Confidence 33444444444443 3679999999999876543321 11111111 01111111112222222
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
+ ...++||||++++.++.+++.|.. .+.+..+|| ++|++++++|++|+++|||||+++++|||+| +++||+
T Consensus 175 ~---~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 175 A---DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp H---CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEE
T ss_pred h---cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEe
Confidence 2 357999999999999999999985 788999999 4688999999999999999999999999999 999986
Q ss_pred -------------------cCCCCChhHHHHHhhhcccC-CCCCeEEEec---ChhhHHHHHHHHHHh
Q 011149 162 -------------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 206 (492)
Q Consensus 162 -------------------~~~P~~~~~y~qr~GR~gR~-g~~g~~i~l~---~~~e~~~~~~l~~~~ 206 (492)
|++|.+.++|+||+||+||. +++|.|++|+ ++.+...++.++..+
T Consensus 247 ~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 247 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 89999999999999999997 6899999996 567777777777665
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-23 Score=236.38 Aligned_cols=206 Identities=18% Similarity=0.279 Sum_probs=153.0
Q ss_pred hHHHHHHHHHhC-----------CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccH
Q 011149 6 FEEDVELILENL-----------PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (492)
Q Consensus 6 F~~~l~~Il~~~-----------~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (492)
|..+++.|+..+ +...|+++||||++.. ..++..++.++..+.+. .......++.+.++ ...+
T Consensus 190 ~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~--~~~~~~~~i~~~~~---~~~k 263 (1054)
T 1gku_B 190 ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG--SSRITVRNVEDVAV---NDES 263 (1054)
T ss_dssp STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS--CCEECCCCEEEEEE---SCCC
T ss_pred ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc--CcccCcCCceEEEe---chhH
Confidence 446677777776 4578999999999887 65555565555444332 22233456666666 2455
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEe----ccccccc
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARG 150 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa----T~~~~~G 150 (492)
...|..++..+ +.++||||+|++.|+.+++.|...+.+..+||+| .+++++|++|+++|||| |+++++|
T Consensus 264 ~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rG 336 (1054)
T 1gku_B 264 ISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRG 336 (1054)
T ss_dssp TTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CC
T ss_pred HHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEec
Confidence 66666666543 5789999999999999999998668999999998 47889999999999999 9999999
Q ss_pred CCCCCc-CEEEecCCC----------------------------------------------------------------
Q 011149 151 LDIPNV-DLIIHYELP---------------------------------------------------------------- 165 (492)
Q Consensus 151 idi~~v-~~VI~~~~P---------------------------------------------------------------- 165 (492)
||+|+| ++||+|++|
T Consensus 337 IDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 416 (1054)
T 1gku_B 337 LDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVV 416 (1054)
T ss_dssp SCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEE
T ss_pred cccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeE
Confidence 999995 999999999
Q ss_pred -------CChhHHHHHhhhcccCCCCC--eEEEecChhhHHHHHHHHHHhC---CCceecCCCCHHHHHHH
Q 011149 166 -------NDPETFVHRSGRTGRAGKEG--TAILMFTSSQRRTVRSLERDVG---CKFEFVSPPVVEDVLES 224 (492)
Q Consensus 166 -------~~~~~y~qr~GR~gR~g~~g--~~i~l~~~~e~~~~~~l~~~~~---~~~~~~~~p~~~~~~~~ 224 (492)
.+..+|+||+|||||.|..| .+++++...+...++.|++.++ ..+..+.....+++++.
T Consensus 417 ~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 487 (1054)
T 1gku_B 417 REGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRE 487 (1054)
T ss_dssp ETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHTTSSCCCBCSCCCHHHHHHH
T ss_pred eecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhhccCccccCCcCCHHHHHHh
Confidence 78999999999999987665 4676666667778888887766 34555555556665554
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-22 Score=217.50 Aligned_cols=199 Identities=22% Similarity=0.243 Sum_probs=145.5
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEE------EcC-----
Q 011149 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI------STT----- 70 (492)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~------~~~----- 70 (492)
.+..+...++.|+..++.+.|+|+||||+|+ ...+++ |+..+ .+... ... ..+...+. ...
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~---~rp--~~l~~~~~~~~~~~~~~~~~~~ 222 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAE-LIVSD---WRP--VKLRRGVFYQGFVTWEDGSIDR 222 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEE-EEECC---CCS--SEEEEEEEETTEEEETTSCEEE
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCc-ccCCC---CCC--CcceEEEEeCCeeeccccchhh
Confidence 3457788899999988778999999999986 355554 55421 11111 000 01111111 111
Q ss_pred cccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc----------------------------------cceee
Q 011149 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----------------------------------IASEA 116 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~----------------------------------~~~~~ 116 (492)
...+...+.++ +.++.++||||++++.++.++..|.+. ..+..
T Consensus 223 ~~~~~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~ 299 (720)
T 2zj8_A 223 FSSWEELVYDA---IRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAF 299 (720)
T ss_dssp CSSTTHHHHHH---HHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEE
T ss_pred hhHHHHHHHHH---HhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeee
Confidence 12333333333 345689999999999999999988742 13889
Q ss_pred ecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe----cC----CCCChhHHHHHhhhcccCC--CCCe
Q 011149 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE----LPNDPETFVHRSGRTGRAG--KEGT 186 (492)
Q Consensus 117 lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----~~----~P~~~~~y~qr~GR~gR~g--~~g~ 186 (492)
+|++|++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||+||.| ..|.
T Consensus 300 ~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~ 379 (720)
T 2zj8_A 300 HHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGE 379 (720)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEE
T ss_pred ecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCce
Confidence 999999999999999999999999999999999999999999998 77 6899999999999999988 5789
Q ss_pred EEEecChhhHHHHHHHHHHhCCCceec
Q 011149 187 AILMFTSSQRRTVRSLERDVGCKFEFV 213 (492)
Q Consensus 187 ~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (492)
|++++++.+. ...+++.+..+++.+
T Consensus 380 ~~~l~~~~~~--~~~~~~~~~~~~~~i 404 (720)
T 2zj8_A 380 GIIVSTSDDP--REVMNHYIFGKPEKL 404 (720)
T ss_dssp EEEECSSSCH--HHHHHHHTTSCCCCC
T ss_pred EEEEecCccH--HHHHHHHhcCCCCCc
Confidence 9999988762 223445554454443
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=210.59 Aligned_cols=174 Identities=20% Similarity=0.320 Sum_probs=131.9
Q ss_pred CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCCh
Q 011149 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK 98 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~ 98 (492)
...|+++||||+++...... ... +............ ...+......+..++..+......+.++||||+|+
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~~--~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DEM--VEQIIRPTGLLDP---LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SSC--EEECCCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHhh----hCe--eeeeecccCCCCC---eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 46899999999987643221 111 2221111111111 12222222333444455555445667999999999
Q ss_pred HHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCC-----CCChhHHH
Q 011149 99 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-----PNDPETFV 172 (492)
Q Consensus 99 ~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~-----P~~~~~y~ 172 (492)
..++.+++.|.+ ++.+..+|+++++.+|.+++++|++|+++|||||+++++|+|+|+|++||+++. |.+.++|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 999999999986 789999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhhhcccCCCCCeEEEecChhhHHHHHHH
Q 011149 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 173 qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (492)
||+||+||. .+|.+++|+++.+....+.|
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 999999998 78999999988655444433
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=208.51 Aligned_cols=123 Identities=20% Similarity=0.338 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHcc-------------cceeeecCCCCHHHHHHHHhhhcC-
Q 011149 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ- 135 (492)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~~-------------~~~~~lhg~~~~~~r~~~~~~F~~- 135 (492)
.|...|..+|... ....++||||++++.++.+++.|... .....+|++|++.+|.+++++|++
T Consensus 372 ~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 451 (556)
T 4a2p_A 372 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 451 (556)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------------
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhccc
Confidence 3555566666443 45689999999999999999999742 234456788999999999999999
Q ss_pred CCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHH
Q 011149 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (492)
Q Consensus 136 g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~ 197 (492)
|+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. ++|.+++|+++.+..
T Consensus 452 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 452 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp --CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999999999999999999999999999999 999 899999999886643
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-22 Score=222.72 Aligned_cols=129 Identities=22% Similarity=0.364 Sum_probs=80.8
Q ss_pred ccHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc-c----cceeee--------cCCCCHHHHHHHHhhhcC
Q 011149 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-I----IASEAL--------HGDISQHQRERTLNGFRQ 135 (492)
Q Consensus 72 ~~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~-~----~~~~~l--------hg~~~~~~r~~~~~~F~~ 135 (492)
..|...|..++... .+..++||||++++.++.+++.|.. . +.+..+ |++|++++|.+++++|++
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~ 458 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 458 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh
Confidence 45777777777665 2457999999999999999999986 3 788888 559999999999999998
Q ss_pred -CCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHH
Q 011149 136 -GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 136 -g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (492)
|+++|||||+++++|||+|+|++||+||+|+++++|+||+|| ||. +.|.+++|++..+......+
T Consensus 459 ~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 459 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp --CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred cCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 998 78999999998776544444
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=211.11 Aligned_cols=127 Identities=24% Similarity=0.280 Sum_probs=111.2
Q ss_pred EcCcccHHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 68 STTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 68 ~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
.+....|..+|...+.. +....++||||+|++.++.|+..|.+ ++++.+||+++.+.++..+.++|+.| .|+||||
T Consensus 439 ~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATn 516 (922)
T 1nkt_A 439 YKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATN 516 (922)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEET
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecc
Confidence 34445677777766644 34567899999999999999999985 89999999999888888888999988 5999999
Q ss_pred cccccCCCCCc----------------------------------------------------CEEEecCCCCChhHHHH
Q 011149 146 VAARGLDIPNV----------------------------------------------------DLIIHYELPNDPETFVH 173 (492)
Q Consensus 146 ~~~~Gidi~~v----------------------------------------------------~~VI~~~~P~~~~~y~q 173 (492)
+++||+||+.+ .|||+|++|.+...|+|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999975 49999999999999999
Q ss_pred HhhhcccCCCCCeEEEecChhhH
Q 011149 174 RSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 174 r~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
|+|||||+|.+|.+++|++..|.
T Consensus 597 r~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 597 LRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHTSSGGGCCEEEEEEEETTSH
T ss_pred HhcccccCCCCeeEEEEechhHH
Confidence 99999999999999999987654
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=213.62 Aligned_cols=202 Identities=23% Similarity=0.344 Sum_probs=139.3
Q ss_pred CCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccce--------EEEEEEcC----
Q 011149 3 AVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI--------KLYAISTT---- 70 (492)
Q Consensus 3 ~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i--------~~~~~~~~---- 70 (492)
+..|...++.|+..++ +.|+|+||||+++ ...+++ |+..+ .+...... ......+ ........
T Consensus 159 ~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~r~-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 233 (715)
T 2va8_A 159 DPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAE-PVATNWRP-VPLIEGVIYPERKKKEYNVIFKDNTTK 233 (715)
T ss_dssp CTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCE-EEECCCCS-SCEEEEEEEECSSTTEEEEEETTSCEE
T ss_pred CcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCC-ccCCCCCC-CCceEEEEecCCcccceeeecCcchhh
Confidence 4567788888888887 8999999999986 355555 44422 12111000 0000000 00011111
Q ss_pred ----cccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-----------------------------------
Q 011149 71 ----ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----------------------------------- 111 (492)
Q Consensus 71 ----~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~----------------------------------- 111 (492)
...+ +..+.+.+.++.++||||++++.++.++..|.+.
T Consensus 234 ~~~~~~~~---~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 234 KVHGDDAI---IAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp EEESSSHH---HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hcccchHH---HHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 1223 3333444456789999999999999999998742
Q ss_pred --cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe----cC-------CCCChhHHHHHhhhc
Q 011149 112 --IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-------LPNDPETFVHRSGRT 178 (492)
Q Consensus 112 --~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----~~-------~P~~~~~y~qr~GR~ 178 (492)
..+..+|++|++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||+
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 24789999999999999999999999999999999999999999999999 99 899999999999999
Q ss_pred ccCC--CCCeEEEecChhhHHHHHHHHHHhCCCceec
Q 011149 179 GRAG--KEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (492)
Q Consensus 179 gR~g--~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (492)
||.| ..|.|++++++.+. ....+++.+...++.+
T Consensus 391 GR~g~~~~G~~~~l~~~~~~-~~~~~~~~l~~~~e~~ 426 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKED-VDRVFKKYVLSDVEPI 426 (715)
T ss_dssp CCTTTCSCEEEEEECSCGGG-HHHHHHHTTSSCCCCC
T ss_pred CCCCCCCCceEEEEeCCchH-HHHHHHHHHcCCCCCc
Confidence 9988 57999999987653 1223334444444443
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-23 Score=220.71 Aligned_cols=175 Identities=14% Similarity=0.181 Sum_probs=130.1
Q ss_pred hHHHHHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHH
Q 011149 6 FEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 84 (492)
Q Consensus 6 F~~~l~~Il~~~~-~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~ 84 (492)
+..++..+...++ .+.|+|+||||+|+.+..+.. .+...+.+.. ..+...+..++..+.
T Consensus 348 ~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~---~~~~i~~v~~---------------~~~~~~~~~~l~~l~-- 407 (673)
T 2wv9_A 348 SIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPD---TNSPVHDVSS---------------EIPDRAWSSGFEWIT-- 407 (673)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC---CSSCEEEEEC---------------CCCSSCCSSCCHHHH--
T ss_pred HHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcc---cCCceEEEee---------------ecCHHHHHHHHHHHH--
Confidence 3444555555543 689999999999876543221 1111111110 011111111222222
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe--
Q 011149 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-- 161 (492)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~-- 161 (492)
....++||||++++.++.+++.|.. .+.+..+||. +|++++++|++|+++|||||+++++|||+| +++|||
T Consensus 408 -~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 408 -DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp -SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred -hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECC
Confidence 2467999999999999999999986 7899999994 799999999999999999999999999999 999998
Q ss_pred ------------------cCCCCChhHHHHHhhhcccC-CCCCeEEEec---ChhhHHHHHHHHHHh
Q 011149 162 ------------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 206 (492)
Q Consensus 162 ------------------~~~P~~~~~y~qr~GR~gR~-g~~g~~i~l~---~~~e~~~~~~l~~~~ 206 (492)
|++|.+.++|+||+||+||. +++|.|++|+ ++.+...++.++..+
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 67999999999999999998 7899999996 566666666666654
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-21 Score=206.57 Aligned_cols=176 Identities=22% Similarity=0.308 Sum_probs=133.2
Q ss_pred CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCCh
Q 011149 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK 98 (492)
Q Consensus 19 ~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~ 98 (492)
...|+++||||+++..... . ...+............ ...+.........++..+......+.++||||+|+
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~--~~~~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----S--GRVVEQIIRPTGLLDP---LVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----C--SEEEEECSCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----h--hCeeeeeeccCCCCCC---eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3679999999998764221 1 1122221111111111 12222222233344444444444678999999999
Q ss_pred HHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCC-----CCChhHHH
Q 011149 99 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-----PNDPETFV 172 (492)
Q Consensus 99 ~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~-----P~~~~~y~ 172 (492)
..++.+++.|.+ ++.+..+|++|++.+|.+++++|++|+++|||||+++++|+|+|+|++||++|. |.+..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 999999999986 788999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhhhcccCCCCCeEEEecChhhHHHHHHHHH
Q 011149 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (492)
Q Consensus 173 qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (492)
||+||+||.+ +|.+++++++.+....+.|++
T Consensus 530 Qr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 530 QTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred HHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 9999999984 899999998877666655543
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=199.31 Aligned_cols=180 Identities=19% Similarity=0.174 Sum_probs=138.3
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE-EEEEcCcccHHHHHHHHHHHH-ccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~ 99 (492)
++..||+|+..+...+.+.|--+ ++.+. .+.+...+.+ ..+......|...+...+... ....++||||+|++
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~l~--vv~IP---tnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e 485 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYGME--VVVIP---THKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIE 485 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSCCC--EEECC---CSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHH
T ss_pred HHeEECCCCchHHHHHHHHhCCe--EEEEC---CCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHH
Confidence 57889999998888887777432 33331 2222223332 234455667887777766543 45689999999999
Q ss_pred HHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCC--------CcCEEEecCCCCChhH
Q 011149 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--------NVDLIIHYELPNDPET 170 (492)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~--------~v~~VI~~~~P~~~~~ 170 (492)
.++.|+..|.+ ++++.+||++..+.++..+.++|+.+ .|+||||+++||+||+ ++.+||++++|.+...
T Consensus 486 ~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~ 563 (822)
T 3jux_A 486 KSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRI 563 (822)
T ss_dssp HHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHH
T ss_pred HHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHH
Confidence 99999999996 89999999996666666666777766 5999999999999998 5669999999999999
Q ss_pred HHHHhhhcccCCCCCeEEEecChhhH-------HHHHHHHHHhCC
Q 011149 171 FVHRSGRTGRAGKEGTAILMFTSSQR-------RTVRSLERDVGC 208 (492)
Q Consensus 171 y~qr~GR~gR~g~~g~~i~l~~~~e~-------~~~~~l~~~~~~ 208 (492)
|+||+|||||+|.+|.+++|++..|. ..++.+.+.++.
T Consensus 564 y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~ 608 (822)
T 3jux_A 564 DNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKI 608 (822)
T ss_dssp HHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCC
Confidence 99999999999999999999987662 344555555543
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-21 Score=206.40 Aligned_cols=128 Identities=24% Similarity=0.358 Sum_probs=89.1
Q ss_pred cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHcc-----cce--------eeecCCCCHHHHHHHHhhhcC-
Q 011149 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-----IAS--------EALHGDISQHQRERTLNGFRQ- 135 (492)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~--------~~lhg~~~~~~r~~~~~~F~~- 135 (492)
.|...|..+|... .+..++||||++++.++.++..|... +.+ ..+||+|++++|.+++++|++
T Consensus 371 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 371 PKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 3555566666543 24589999999999999999999852 333 345669999999999999999
Q ss_pred CCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHH
Q 011149 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 136 g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (492)
|+++|||||+++++|||+|++++||+||+|+++..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 451 g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 451 GDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp -CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 998 89999999998776544433
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-21 Score=197.63 Aligned_cols=122 Identities=34% Similarity=0.550 Sum_probs=108.2
Q ss_pred cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecC--------CCCHHHHHHHHhhhcCCCeEE
Q 011149 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG--------DISQHQRERTLNGFRQGKFTV 140 (492)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg--------~~~~~~r~~~~~~F~~g~~~i 140 (492)
.|...|.+++..+ ....++||||++++.++.+++.|.. .+.+..+|| +|++.+|.+++++|++++++|
T Consensus 343 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~v 422 (494)
T 1wp9_A 343 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 422 (494)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSE
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceE
Confidence 4566666666654 3578999999999999999999986 788999999 999999999999999999999
Q ss_pred EEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 141 LVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
||||+++++|||+|++++||+||+|+++..|+||+||++|.|. |.+++|+++.+
T Consensus 423 Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 423 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred EEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 9999999999999999999999999999999999999999997 99999988753
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-22 Score=212.12 Aligned_cols=102 Identities=19% Similarity=0.318 Sum_probs=92.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe-----
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----- 161 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----- 161 (492)
..++||||+|++.++.+++.|.. .+.+..+|++ +|++++++|++|+.+|||||+++++|||+|+ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~ 264 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSV 264 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEEC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccc
Confidence 57999999999999999999986 7899999995 7889999999999999999999999999999 99999
Q ss_pred ---------------cCCCCChhHHHHHhhhcccCCC-CCeEEEecChh
Q 011149 162 ---------------YELPNDPETFVHRSGRTGRAGK-EGTAILMFTSS 194 (492)
Q Consensus 162 ---------------~~~P~~~~~y~qr~GR~gR~g~-~g~~i~l~~~~ 194 (492)
|++|.+.++|+||+||+||.|. +|.+++|+++.
T Consensus 265 ~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 265 KPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 99999998875
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=210.83 Aligned_cols=126 Identities=25% Similarity=0.327 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cc---------------------------------------ce
Q 011149 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II---------------------------------------AS 114 (492)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~---------------------------------------~~ 114 (492)
...+...+... ...++||||+|++.|+.++..|.. .+ .+
T Consensus 324 ~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 402 (997)
T 4a4z_A 324 WPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGI 402 (997)
T ss_dssp HHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCe
Confidence 33344444332 346999999999999999998864 22 47
Q ss_pred eeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCC---------CChhHHHHHhhhcccCC--C
Q 011149 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP---------NDPETFVHRSGRTGRAG--K 183 (492)
Q Consensus 115 ~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P---------~~~~~y~qr~GR~gR~g--~ 183 (492)
..+|++|++.+|+.+++.|++|.++|||||+++++|||+|++.+|| +++| .++.+|+||+|||||.| .
T Consensus 403 ~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~ 481 (997)
T 4a4z_A 403 AVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIF-SSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDS 481 (997)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEE-SCSEEEETTEEEECCHHHHHHHHGGGCCTTTCS
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEE-eccccccCccCCCCCHHHHhHHhcccccCCCCc
Confidence 8999999999999999999999999999999999999999955554 4444 49999999999999988 6
Q ss_pred CCeEEEecC--hhhHHHHHHH
Q 011149 184 EGTAILMFT--SSQRRTVRSL 202 (492)
Q Consensus 184 ~g~~i~l~~--~~e~~~~~~l 202 (492)
.|.+++++. +.+...++.+
T Consensus 482 ~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 482 TGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp SEEEEEECCSSCCCHHHHHHH
T ss_pred ceEEEEecCCCcchHHHHHHH
Confidence 788888873 3344455544
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-21 Score=199.35 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=121.8
Q ss_pred CChHHHHHHHHHh-CCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHH
Q 011149 4 VGFEEDVELILEN-LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (492)
Q Consensus 4 ~GF~~~l~~Il~~-~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 82 (492)
+.+...+..+... .+++.|+++||||+|..+..+ +..++..+.+.. ..+.. .+ ..+ ...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~----~~p~~--~~------~~~----~~~l 184 (451)
T 2jlq_A 124 PCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIER----EIPER--SW------NTG----FDWI 184 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEEC----CCCSS--CC------SSS----CHHH
T ss_pred cchHHHHHHHHHhhcCCCceEEEEccCCCccchhh---hcCCCceEecCc----cCCch--hh------HHH----HHHH
Confidence 3344444444332 356899999999998754432 333444443321 00000 00 011 1222
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEe
Q 011149 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (492)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~ 161 (492)
.. ...++||||+|++.|+.+++.|.+ .+.+..+|+++ ++++++.|++|+.+|||||+++++|||+|+ ++|||
T Consensus 185 ~~--~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~ 257 (451)
T 2jlq_A 185 TD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVID 257 (451)
T ss_dssp HH--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEE
T ss_pred Hh--CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEE
Confidence 22 356999999999999999999986 78899999975 357999999999999999999999999999 99999
Q ss_pred cC--------------------CCCChhHHHHHhhhcccCCC-CCeEEEecCh
Q 011149 162 YE--------------------LPNDPETFVHRSGRTGRAGK-EGTAILMFTS 193 (492)
Q Consensus 162 ~~--------------------~P~~~~~y~qr~GR~gR~g~-~g~~i~l~~~ 193 (492)
|+ +|.+.++|+||+||+||.|+ +|.+++|+..
T Consensus 258 ~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 258 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99 99999999999999999997 8889888753
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=215.48 Aligned_cols=179 Identities=17% Similarity=0.234 Sum_probs=144.1
Q ss_pred HHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccC
Q 011149 9 DVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG 88 (492)
Q Consensus 9 ~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~ 88 (492)
...++++.++.+.|+++||||+++....++...+.++..+... ......+..++... .+..+...++..+..+
T Consensus 740 ~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~----~~~r~~i~~~~~~~---~~~~i~~~il~~l~~g 812 (1151)
T 2eyq_A 740 RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP----PARRLAVKTFVREY---DSMVVREAILREILRG 812 (1151)
T ss_dssp HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC----CCBCBCEEEEEEEC---CHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC----CCCccccEEEEecC---CHHHHHHHHHHHHhcC
Confidence 4566777788889999999998777776665555544333211 11122344443332 3445556666666677
Q ss_pred CeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCC-
Q 011149 89 GKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL- 164 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~- 164 (492)
.++||||++++.++.+++.|.+ .+.+..+||+|++.+|++++++|++|+++|||||+++++|||+|++++||+++.
T Consensus 813 ~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~ 892 (1151)
T 2eyq_A 813 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 892 (1151)
T ss_dssp CEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTT
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCC
Confidence 8999999999999999999986 467999999999999999999999999999999999999999999999999988
Q ss_pred CCChhHHHHHhhhcccCCCCCeEEEecChh
Q 011149 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (492)
Q Consensus 165 P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 194 (492)
+++...|+||+||+||.|+.|.|++++.+.
T Consensus 893 ~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 893 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp SSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 579999999999999999999999998764
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-20 Score=203.98 Aligned_cols=122 Identities=20% Similarity=0.346 Sum_probs=71.1
Q ss_pred cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHcc-------------cceeeecCCCCHHHHHHHHhhhcC-
Q 011149 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ- 135 (492)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~~-------------~~~~~lhg~~~~~~r~~~~~~F~~- 135 (492)
.|...|..+|... ....++||||++++.++.|+..|... ..+..+||+|++.+|.+++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~ 692 (797)
T 4a2q_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (797)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------------
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhcc
Confidence 3555555565542 34589999999999999999999752 245567899999999999999999
Q ss_pred CCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhH
Q 011149 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 136 g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
|+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. ++|.+++|+++.+.
T Consensus 693 g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp -CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 999999999999999999999999999999999999999999 999 89999999988654
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=208.31 Aligned_cols=166 Identities=17% Similarity=0.255 Sum_probs=142.3
Q ss_pred CcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcCCC--eEEEEecc
Q 011149 70 TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATD 145 (492)
Q Consensus 70 ~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~--~~iLVaT~ 145 (492)
....|...|..++.. .+..++||||+++..++.++..|.. ++.+..+||+|++.+|++++++|++++ ++|||||+
T Consensus 486 ~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~ 564 (968)
T 3dmq_A 486 NFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE 564 (968)
T ss_dssp TTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred CccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc
Confidence 445688888888876 3578999999999999999999984 789999999999999999999999998 99999999
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHh--CCCceecCCCCHHHHHH
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV--GCKFEFVSPPVVEDVLE 223 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~--~~~~~~~~~p~~~~~~~ 223 (492)
++++|||+|++++||+||+|+++..|+||+||++|.|+++.+++++...+....+.|.+.+ +.++....+|...++.+
T Consensus 565 v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~~ 644 (968)
T 3dmq_A 565 IGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYD 644 (968)
T ss_dssp CTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHHHH
T ss_pred hhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCCHHHHHH
Confidence 9999999999999999999999999999999999999988777765544444445555555 55666678889999988
Q ss_pred HHHHHHHHHhccC
Q 011149 224 SSAEQVVATLNGV 236 (492)
Q Consensus 224 ~~~~~~~~~l~~~ 236 (492)
...+.+...+...
T Consensus 645 ~~~~~l~~~l~~~ 657 (968)
T 3dmq_A 645 SVYNDLINYLASP 657 (968)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc
Confidence 8888888777653
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=201.14 Aligned_cols=193 Identities=18% Similarity=0.176 Sum_probs=142.2
Q ss_pred CCCCChHHHHHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHH
Q 011149 1 MLAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (492)
|++++|...++.++..++ .+.|++++|||. +.+..++... .....+... ... ..+. +.... +.
T Consensus 251 l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~----~r~-~~l~---~~~~~------l~ 314 (677)
T 3rc3_A 251 IRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDY----KRL-TPIS---VLDHA------LE 314 (677)
T ss_dssp GGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEEC----CCS-SCEE---ECSSC------CC
T ss_pred cCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEEe----eec-chHH---HHHHH------HH
Confidence 568899999999999998 788999999996 3455555443 233333211 000 0110 00000 00
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcC--CCeEEEEecccccccCCCCCc
Q 011149 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNV 156 (492)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~--g~~~iLVaT~~~~~Gidi~~v 156 (492)
.+.. .....||||+|++.++.+++.|.+ .+.+..+||+|++++|+++++.|++ |.++|||||+++++|||+ +|
T Consensus 315 -~l~~--~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v 390 (677)
T 3rc3_A 315 -SLDN--LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SI 390 (677)
T ss_dssp -SGGG--CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CB
T ss_pred -HHHh--cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-Cc
Confidence 0111 134568999999999999999986 7899999999999999999999999 889999999999999999 89
Q ss_pred CEEEecCC--------------CCChhHHHHHhhhcccCCCC---CeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 157 DLIIHYEL--------------PNDPETFVHRSGRTGRAGKE---GTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 157 ~~VI~~~~--------------P~~~~~y~qr~GR~gR~g~~---g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
++||++++ |.+.++|+||+|||||.|.. |.|++++.. +...++.+.......++...
T Consensus 391 ~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~~~~~~~i~~~~ 464 (677)
T 3rc3_A 391 RRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKEILKRPVDPIRAAG 464 (677)
T ss_dssp SEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHHHHHSCCCCCCCEE
T ss_pred cEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHHHHhcCcchhhhcc
Confidence 99999999 88999999999999999964 666666544 55566666655555555533
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-20 Score=205.95 Aligned_cols=103 Identities=28% Similarity=0.518 Sum_probs=89.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-------ccceeeecCC--------CCHHHHHHHHhhhcCCCeEEEEecccccccCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-------IIASEALHGD--------ISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-------~~~~~~lhg~--------~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gid 152 (492)
..++||||++++.++.|++.|.. ++.+..+||+ |++.+|.+++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 68999999999999999999986 4889999999 99999999999999999999999999999999
Q ss_pred CCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecCh
Q 011149 153 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (492)
Q Consensus 153 i~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (492)
+|+|++||+||+|++++.|+||+||++|.| .+++++.+
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999999976544 55555543
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-19 Score=200.03 Aligned_cols=121 Identities=21% Similarity=0.348 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHcc-------------cceeeecCCCCHHHHHHHHhhhcC-C
Q 011149 74 KRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ-G 136 (492)
Q Consensus 74 k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~~-------------~~~~~lhg~~~~~~r~~~~~~F~~-g 136 (492)
|...|..+|... ....++||||++++.++.|+..|... ..+..+||+|++.+|.+++++|++ |
T Consensus 614 K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 614 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp HHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccC
Confidence 444455555443 24579999999999999999999852 234556899999999999999999 9
Q ss_pred CeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhH
Q 011149 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 137 ~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|++..+.
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 99999999999999999999999999999999999999999 998 78999999887654
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-20 Score=204.05 Aligned_cols=174 Identities=17% Similarity=0.270 Sum_probs=127.9
Q ss_pred CCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeC
Q 011149 17 LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQ 96 (492)
Q Consensus 17 ~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~ 96 (492)
...+.|+++||||+++....+. ++.+.....+...... ...+..++ ........++..+.+......+++|||+
T Consensus 513 ~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~--r~~i~~~~--~~~~~~~~l~~~i~~~l~~g~qvlVf~~ 586 (780)
T 1gm5_A 513 KGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPG--RKEVQTML--VPMDRVNEVYEFVRQEVMRGGQAFIVYP 586 (780)
T ss_dssp SSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSS--CCCCEECC--CCSSTHHHHHHHHHHHTTTSCCBCCBCC
T ss_pred hCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCC--CcceEEEE--eccchHHHHHHHHHHHHhcCCcEEEEec
Confidence 3457899999999866554433 3333222111111111 12232222 2333444455555555556789999999
Q ss_pred Ch--------HHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCC
Q 011149 97 TK--------RDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (492)
Q Consensus 97 t~--------~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~ 164 (492)
+. ..++.+++.|.. .+.+..+||+|++++|++++++|++|+++|||||+++++|||+|++++||++++
T Consensus 587 ~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~ 666 (780)
T 1gm5_A 587 LIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENP 666 (780)
T ss_dssp CC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSC
T ss_pred chhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCC
Confidence 66 457788888876 357899999999999999999999999999999999999999999999999999
Q ss_pred CC-ChhHHHHHhhhcccCCCCCeEEEecChhhH
Q 011149 165 PN-DPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (492)
Q Consensus 165 P~-~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (492)
|. +...|+||+||+||.|++|.|++++.+.+.
T Consensus 667 ~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~ 699 (780)
T 1gm5_A 667 ERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGE 699 (780)
T ss_dssp SSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCH
T ss_pred CCCCHHHHHHHhcccCcCCCCCEEEEEECCCCh
Confidence 96 788999999999999999999999985333
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-20 Score=191.81 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=115.0
Q ss_pred ChHHHHHHHHHhC-CCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011149 5 GFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (492)
Q Consensus 5 GF~~~l~~Il~~~-~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 83 (492)
+|...+..+.... +.+.|+|+||||+|+.+..+.. .++..+.+.. ..+.... ..+..++.
T Consensus 108 ~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~---~~~~i~~~~~---------------~~~~~~~-~~~~~~l~ 168 (431)
T 2v6i_A 108 ASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP---SNSPIIDEET---------------RIPDKAW-NSGYEWIT 168 (431)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC---CSSCCEEEEC---------------CCCSSCC-SSCCHHHH
T ss_pred cHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC---CCCceeeccc---------------cCCHHHH-HHHHHHHH
Confidence 3455555555443 5689999999999875432211 0111111110 0111111 11112222
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCE----
Q 011149 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL---- 158 (492)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~---- 158 (492)
. ...++||||++++.++.+++.|.. .+.+..+||+ +|++++++|++|+++|||||+++++|||+| +.+
T Consensus 169 ~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 169 E--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp S--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEEC
T ss_pred c--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEec
Confidence 2 357899999999999999999986 7889999997 578899999999999999999999999999 655
Q ss_pred -------------EEecCCCCChhHHHHHhhhcccCCC-CCeEEEec
Q 011149 159 -------------IIHYELPNDPETFVHRSGRTGRAGK-EGTAILMF 191 (492)
Q Consensus 159 -------------VI~~~~P~~~~~y~qr~GR~gR~g~-~g~~i~l~ 191 (492)
||+++.|.+.++|+||+||+||.+. .+.++++.
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6788999999999999999999985 55555554
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-19 Score=206.63 Aligned_cols=188 Identities=14% Similarity=0.164 Sum_probs=136.6
Q ss_pred HHHHhCCCCCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEEEEEcCcccH-------HHHHHHHHHH
Q 011149 12 LILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-------RTILSDLITV 84 (492)
Q Consensus 12 ~Il~~~~~~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k-------~~~l~~ll~~ 84 (492)
.|..+++.+.|+|+||||+|+ ..++++..-.++..+........ +..++.+......... ...+...+..
T Consensus 1075 ~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~R--PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 1151 (1724)
T 4f92_B 1075 YISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVR--PVPLELHIQGFNISHTQTRLLSMAKPVYHAITK 1151 (1724)
T ss_dssp HHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGC--SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHH
T ss_pred HHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCC--CCCeEEEEEeccCCCchhhhhhhcchHHHHHHH
Confidence 344556789999999999986 45666544334333322211111 2223333322222221 1223344555
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHcc-----------------------------------cceeeecCCCCHHHHHHH
Q 011149 85 YAKGGKTIVFTQTKRDADEVSLALTSI-----------------------------------IASEALHGDISQHQRERT 129 (492)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~~-----------------------------------~~~~~lhg~~~~~~r~~~ 129 (492)
+....++||||+|++.|+.++..|... ..+.++|++|++.+|..+
T Consensus 1152 ~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~V 1231 (1724)
T 4f92_B 1152 HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLV 1231 (1724)
T ss_dssp HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHH
T ss_pred hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHH
Confidence 566789999999999999888766321 247789999999999999
Q ss_pred HhhhcCCCeEEEEecccccccCCCCCcCEEEe----------cCCCCChhHHHHHhhhcccCCC--CCeEEEecChhhHH
Q 011149 130 LNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----------YELPNDPETFVHRSGRTGRAGK--EGTAILMFTSSQRR 197 (492)
Q Consensus 130 ~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----------~~~P~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~e~~ 197 (492)
++.|++|.++|||||+++++|||+|.+.+||. ...|.++.+|+||+|||||+|. .|.+++++.+.+..
T Consensus 1232 E~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~ 1311 (1724)
T 4f92_B 1232 EQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKD 1311 (1724)
T ss_dssp HHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHH
T ss_pred HHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHH
Confidence 99999999999999999999999999999993 2347789999999999999985 79999999988877
Q ss_pred HHHHH
Q 011149 198 TVRSL 202 (492)
Q Consensus 198 ~~~~l 202 (492)
.++++
T Consensus 1312 ~~~~l 1316 (1724)
T 4f92_B 1312 FFKKF 1316 (1724)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76655
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-20 Score=191.81 Aligned_cols=114 Identities=25% Similarity=0.452 Sum_probs=101.1
Q ss_pred cccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccccc
Q 011149 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~G 150 (492)
...|...|.+++... ...++||||++++.++.+++.|. +..+||++++.+|++++++|++++++|||||+++++|
T Consensus 333 ~~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l~----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~G 407 (472)
T 2fwr_A 333 SKNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVFL----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEG 407 (472)
T ss_dssp CSHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHTT----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSS
T ss_pred ChHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHhC----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcC
Confidence 345677777777763 56899999999999999998874 6789999999999999999999999999999999999
Q ss_pred CCCCCcCEEEecCCCCChhHHHHHhhhcccCCCC-CeEEE
Q 011149 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAIL 189 (492)
Q Consensus 151 idi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~-g~~i~ 189 (492)
+|+|++++||++++|+++..|+||+||++|.|.. +.+++
T Consensus 408 ldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i 447 (472)
T 2fwr_A 408 IDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVL 447 (472)
T ss_dssp SCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEE
T ss_pred cccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEE
Confidence 9999999999999999999999999999999854 34443
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=204.32 Aligned_cols=184 Identities=20% Similarity=0.318 Sum_probs=132.4
Q ss_pred HhCCCCCcEEEEeeeCChHHHHHHHHHcC-CCc-eEEeecccccccccceEEEEEEcCcccH---HHHHHHHH----HHH
Q 011149 15 ENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPL-NIDLVGNQDEKLAEGIKLYAISTTATSK---RTILSDLI----TVY 85 (492)
Q Consensus 15 ~~~~~~~q~ll~SAT~p~~i~~~~~~~~~-~~~-~i~~~~~~~~~~~~~i~~~~~~~~~~~k---~~~l~~ll----~~~ 85 (492)
..++++.|+|++|||+|+ +.++++ |+. ++. .+.+.... .-+..+++.++....... ...+..++ ..+
T Consensus 239 ~~~~~~~riI~LSATl~N-~~dvA~-wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 314 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLPN-YEDVAT-FLRVDPAKGLFYFDNS--FRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEH 314 (1724)
T ss_dssp HHHTCCCEEEEEECSCTT-HHHHHH-HTTCCHHHHEEECCGG--GCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HhCCCCCcEEEEecccCC-HHHHHH-HhCCCCCCCeEEECCC--CccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHH
Confidence 456789999999999986 556665 554 221 12222111 112334444444433322 22232222 222
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHcc--------------------------------------cceeeecCCCCHHHHH
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRE 127 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~~--------------------------------------~~~~~lhg~~~~~~r~ 127 (492)
....++||||+|++.|+.++..|.+. ..+.++|++|++.+|.
T Consensus 315 ~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 315 AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 24568999999999999888877521 1367899999999999
Q ss_pred HHHhhhcCCCeEEEEecccccccCCCCCcCEEEe----cC------CCCChhHHHHHhhhcccCC--CCCeEEEecChhh
Q 011149 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (492)
Q Consensus 128 ~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~----~~------~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e 195 (492)
.+++.|++|.++|||||+++++|||+|.+++||. |+ .|.++.+|+||+|||||.| ..|.+++++++.+
T Consensus 395 ~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 395 LVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTT
T ss_pred HHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchh
Confidence 9999999999999999999999999999999995 44 3568999999999999987 5799999988877
Q ss_pred HHHHHHH
Q 011149 196 RRTVRSL 202 (492)
Q Consensus 196 ~~~~~~l 202 (492)
...+..+
T Consensus 475 ~~~~~~l 481 (1724)
T 4f92_B 475 LQYYLSL 481 (1724)
T ss_dssp CCHHHHH
T ss_pred HHHHHHH
Confidence 6555544
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=168.67 Aligned_cols=124 Identities=15% Similarity=0.273 Sum_probs=96.8
Q ss_pred CcccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcCC-CeE-EEEec
Q 011149 70 TATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVAT 144 (492)
Q Consensus 70 ~~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~-iLVaT 144 (492)
....|...|..+|..+ ..+.++||||+++..++.|...|.. ++.+..+||++++.+|++++++|+++ .++ +||+|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4567899888888765 3567999999999999999999985 78899999999999999999999998 676 78999
Q ss_pred ccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeE--EEecCh
Q 011149 145 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTS 193 (492)
Q Consensus 145 ~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~--i~l~~~ 193 (492)
+++++|||++.+++||+||+||++..|+||+||++|.|+++.+ +.|++.
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 9999999999999999999999999999999999999977654 444443
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=181.98 Aligned_cols=184 Identities=11% Similarity=0.110 Sum_probs=127.7
Q ss_pred HHHHHHHHhCCCCCcEEEEeeeCChHHHHHHH-HHcCCCceEEeeccc----ccccccceEEEEEEcCc-----------
Q 011149 8 EDVELILENLPPKRQSMLFSATMPSWVKKLSR-KYLDNPLNIDLVGNQ----DEKLAEGIKLYAISTTA----------- 71 (492)
Q Consensus 8 ~~l~~Il~~~~~~~q~ll~SAT~p~~i~~~~~-~~~~~~~~i~~~~~~----~~~~~~~i~~~~~~~~~----------- 71 (492)
.++..|++.++...++++||||+|.....+.. ..+.++..+.+.... .......+....+..+.
T Consensus 240 ~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (510)
T 2oca_A 240 KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTY 319 (510)
T ss_dssp HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCH
T ss_pred ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccch
Confidence 56778889998889999999999766433211 112233322221100 00011111111111111
Q ss_pred ----------ccHHHHHHHHHHHH-ccC-CeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCe
Q 011149 72 ----------TSKRTILSDLITVY-AKG-GKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (492)
Q Consensus 72 ----------~~k~~~l~~ll~~~-~~~-~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~ 138 (492)
..+...+..++... ... .++||||+ .+.++.+++.|.+ ...+..+||+|++.+|+++++.|++++.
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~ 398 (510)
T 2oca_A 320 QEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKG 398 (510)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCC
Confidence 12333344444433 223 35566666 8889999999986 4689999999999999999999999999
Q ss_pred EEEEec-ccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecC
Q 011149 139 TVLVAT-DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 192 (492)
Q Consensus 139 ~iLVaT-~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (492)
+||||| +++++|+|+|++++||++++|+++..|+||+||+||.|..+.++++++
T Consensus 399 ~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 399 IIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999 999999999999999999999999999999999999998774444443
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=178.38 Aligned_cols=97 Identities=22% Similarity=0.319 Sum_probs=86.3
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHccc---------ceeeecCCCCHHHHHHHHhhhcCCCeE---EEEecccccccCCC
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTSII---------ASEALHGDISQHQRERTLNGFRQGKFT---VLVATDVAARGLDI 153 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~~~---------~~~~lhg~~~~~~r~~~~~~F~~g~~~---iLVaT~~~~~Gidi 153 (492)
....++||||++++.|+.+++.|.+.. .+..+||++++ +|++++++|++++.+ |||||+++++|||+
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 345799999999999999999997521 26788999764 799999999998766 89999999999999
Q ss_pred CCcCEEEecCCCCChhHHHHHhhhcccCCC
Q 011149 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (492)
Q Consensus 154 ~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~ 183 (492)
|++++||++++|+++..|+||+||++|.+.
T Consensus 516 p~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 516 PTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 999999999999999999999999999763
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=160.50 Aligned_cols=118 Identities=17% Similarity=0.305 Sum_probs=100.5
Q ss_pred ccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcCC-CeE-EEEeccc
Q 011149 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVATDV 146 (492)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~-iLVaT~~ 146 (492)
..|...+.+++... ..+.++||||+++..++.++..|.. .+.+..+||++++.+|++++++|+++ ..+ +||+|++
T Consensus 324 s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~ 403 (500)
T 1z63_A 324 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 403 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCC
T ss_pred chhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccc
Confidence 46777777777654 4567999999999999999999985 68899999999999999999999988 555 7999999
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEE
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~ 189 (492)
+++|||+|.+++||+||+|+++..|+||+||++|.|.+..+++
T Consensus 404 ~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v 446 (500)
T 1z63_A 404 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 446 (500)
T ss_dssp C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEE
T ss_pred ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEE
Confidence 9999999999999999999999999999999999997765533
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=158.02 Aligned_cols=134 Identities=12% Similarity=0.254 Sum_probs=112.2
Q ss_pred ccHHHHHHHHHHHHc--cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCe---EEEEecc
Q 011149 72 TSKRTILSDLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATD 145 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~--~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~---~iLVaT~ 145 (492)
..|..+|..++..+. .+.++||||+++..++.|...|.. ++.+..+||++++++|++++++|+++.. .+||+|+
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 457778888877653 467999999999999999999985 7899999999999999999999999865 4899999
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEE--ecChh--hHHHHHHHHHH
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL--MFTSS--QRRTVRSLERD 205 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~--l~~~~--e~~~~~~l~~~ 205 (492)
+++.|||++.+++||+||+||++..|.|++||++|.|.+..+++ |+... |...++.++++
T Consensus 478 a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K 541 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK 541 (644)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred cccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997665443 44432 44444444433
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-14 Score=156.85 Aligned_cols=137 Identities=18% Similarity=0.318 Sum_probs=116.1
Q ss_pred ccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCe---EEEEeccc
Q 011149 72 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATDV 146 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~---~iLVaT~~ 146 (492)
..|+.+|..+|..+. .+.++||||.....++.|...|.. ++.+..+||.+++.+|++++++|+++.. .+||+|.+
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 457888888887763 457999999999999999999985 8899999999999999999999998654 49999999
Q ss_pred ccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeE--EEecChh--hHHHHHHHHHHhCC
Q 011149 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTSS--QRRTVRSLERDVGC 208 (492)
Q Consensus 147 ~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~--i~l~~~~--e~~~~~~l~~~~~~ 208 (492)
++.|||++.+++||+||+||++..++|++||+.|.|.+..+ +.|++.. |...++.++++...
T Consensus 635 gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l 700 (800)
T 3mwy_W 635 GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMIL 700 (800)
T ss_dssp HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTS
T ss_pred ccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999966544 4445443 56666666666543
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-13 Score=149.78 Aligned_cols=119 Identities=10% Similarity=0.111 Sum_probs=93.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc-------------cce-eeecCC----------C----------CH-----------
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI-------------IAS-EALHGD----------I----------SQ----------- 123 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~-------------~~~-~~lhg~----------~----------~~----------- 123 (492)
.++||||+++..|..+++.|.+. +.+ .++|++ + ++
T Consensus 538 ~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~ 617 (1038)
T 2w00_A 538 FNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIR 617 (1038)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHH
Confidence 58999999999999999998752 344 455542 2 22
Q ss_pred ------------------HHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCC-
Q 011149 124 ------------------HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE- 184 (492)
Q Consensus 124 ------------------~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~- 184 (492)
.+|..++++|++++++|||+|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+..
T Consensus 618 dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~ 696 (1038)
T 2w00_A 618 EYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDAT 696 (1038)
T ss_dssp HHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTT
T ss_pred HHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCC
Confidence 248889999999999999999999999999999 788999999999999999999998753
Q ss_pred ---CeEEEecChhhHHHHHHHHHHhCCC
Q 011149 185 ---GTAILMFTSSQRRTVRSLERDVGCK 209 (492)
Q Consensus 185 ---g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (492)
|.++.|+.. .....+.|..+....
T Consensus 697 K~~G~IVdf~~~-~~~l~~Al~~y~~~~ 723 (1038)
T 2w00_A 697 KTFGNIVTFRDL-ERSTIDAITLFGDKN 723 (1038)
T ss_dssp CCSEEEEESSCC-HHHHHHHHHHTSCSS
T ss_pred CCcEEEEEcccc-HHHHHHHHHHHhCCC
Confidence 666666653 334445555444443
|
| >2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.8e-10 Score=74.48 Aligned_cols=38 Identities=24% Similarity=0.577 Sum_probs=32.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 417 SSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 417 ~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
.|++||+.||.+++|+... ...||+||++||+|+|||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~~--------------------------------------~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQPR--------------------------------------QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp BCTTTCCBSSCTTTCCSCC--------------------------------------CSSCTTTCCSSSCTTTSCC
T ss_pred eeeccCCCCcccccCCCCC--------------------------------------CCccccCCCCCCccCcCcC
Confidence 3899999999999997541 0139999999999999996
|
| >1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.1e-10 Score=82.75 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
+.||+|++.||++++|+...... . .+.....||+||++||||+|||+
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~~~~---------------------~---------~~~~~~~C~~Cg~~GH~ar~C~~ 48 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHAHNN---------------------A---------EPKVPGLCPRCKRGKHWANECKS 48 (60)
T ss_dssp ---------------------------------------------------------CCCSCSSCSSCSSCSTTCCC
T ss_pred CccccCCCCCcCHhhCcCCCCCc---------------------c---------ccCCCcceeECCCCCCccCcCCC
Confidence 56999999999999998652210 0 01123459999999999999995
|
| >2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus} | Back alignment and structure |
|---|
Probab=98.91 E-value=7.1e-10 Score=72.26 Aligned_cols=36 Identities=19% Similarity=0.483 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 417 SSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 417 ~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
.|++||+.||.+++|+.+ ..||+|+++||+|+|||+
T Consensus 2 ~C~~Cg~~GH~~~~C~~~----------------------------------------~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP----------------------------------------KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB----------------------------------------TTCSSCCCTTGGGGTTCC
T ss_pred cccccCCCCcchhhCcCc----------------------------------------CeEccCCCcCCccCcCcC
Confidence 489999999999999743 129999999999999996
|
| >2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-09 Score=75.12 Aligned_cols=39 Identities=23% Similarity=0.597 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||+.||.+++|+... ...||+||++||+|+|||+
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~~--------------------------------------~~~C~~Cg~~GH~~~~C~~ 45 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAPR--------------------------------------RQGCWKCGKTGHVMAKCPE 45 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCSS--------------------------------------CCSCSSSCCSSCCGGGCCS
T ss_pred CeeeecCCCCcChhhCcCCC--------------------------------------CCeeCcCCCcCCccCCCcC
Confidence 56999999999999997641 0129999999999999995
|
| >2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.1e-09 Score=76.41 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||+.||.+++|+.... ...||+|+++||+|+|||+
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~~~-------------------------------------~~~C~~Cg~~GH~ar~Cp~ 47 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLPPQ-------------------------------------PKKCHFCQSISHMVASCPL 47 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSCCC-------------------------------------SSCCTTTCCSSSCTTTCTG
T ss_pred CcccccCCCCcChhhCCCCCC-------------------------------------CCccCCcCCcCCccCcCCC
Confidence 569999999999999975410 1239999999999999994
|
| >2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-08 Score=79.52 Aligned_cols=89 Identities=22% Similarity=0.300 Sum_probs=71.8
Q ss_pred HcCCCCCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCC-CcCccccEEEeecCccceeEeecCHHHH
Q 011149 267 LSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIA 345 (492)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~ig~i~~~~~~~~~gs~fdv~~~~a 345 (492)
++|+++ ++.|||+++.+|++|+.+..+.+ .-.+..++.+|.+..+. ..++|++|.++++. +|++||||++.+
T Consensus 2 ~SG~te-~~~RSLLt~~eG~~Tl~l~~~~~----i~~~~y~w~~L~~~l~e~~~~~v~~m~l~~d~--~GavFDvP~e~~ 74 (92)
T 2e29_A 2 SSGSSG-FEPRSLITSDKGFVTMTLESLEE----IQDVSCAWKELNRKLSSNAVSQITRMCLLKGN--MGVCFDVPTTES 74 (92)
T ss_dssp CCSCSC-CCCCCCCCCCCCEEEEEEECSSC----CSSTHHHHHHHHHHSCHHHHTTCEEEEECTTS--SEEEEEEEHHHH
T ss_pred CCCcCC-CCCcccccCCCCCEEEEEecCCc----ccchHHHHHHHHHhcCHHHHhhhCeEEEecCC--CEEEEECcHHHH
Confidence 457777 55699999999999999988763 34688888999986654 45679999999885 499999999999
Q ss_pred HHHHhhcCCCCCceeee
Q 011149 346 KELLNKQIPPGNTISKI 362 (492)
Q Consensus 346 ~~~i~~~~~~~i~~~~~ 362 (492)
+++++.+.+..++++++
T Consensus 75 ~~~~~~~~~~~~~l~v~ 91 (92)
T 2e29_A 75 ERLQAEWHDSDWILSVP 91 (92)
T ss_dssp HHHHHHCCSSSCEEECC
T ss_pred HHHHhhCCCCceEEEec
Confidence 99999987644666554
|
| >1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.3e-09 Score=75.79 Aligned_cols=39 Identities=21% Similarity=0.515 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||+.||.+++|+... ...||+||++||+|+|||+
T Consensus 13 ~~C~~Cg~~GH~a~~C~~~~--------------------------------------~~~C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRAPR--------------------------------------KKGCWKCGKEGHQMKDCTE 51 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSCS--------------------------------------CCBCTTTCCBSSCGGGCSS
T ss_pred cceeeeCCCCcChhhcCCCC--------------------------------------CCEeCCCCCcCCccCCCcC
Confidence 56999999999999997541 1139999999999999995
|
| >2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.8e-09 Score=75.73 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=34.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
..||+|++.||++++|+.....+ .....||+|+++||+|+|||+
T Consensus 5 ~~C~~Cg~~GH~a~~C~~~~~~~---------------------------------~~~~~C~~Cg~~GH~ar~C~~ 48 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPKKRKSG---------------------------------NSRERCQLCNGMGHNAKQCRK 48 (61)
T ss_dssp TBCSSSCCBTCCGGGCTTTTSSS---------------------------------CCCSBCTTTCCBSSCGGGCCC
T ss_pred CcccccCCCCeehhhCcCCcCCC---------------------------------CCCCeeCCCCCCCCCcCCCcC
Confidence 56999999999999998652110 012349999999999999995
|
| >1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-09 Score=62.90 Aligned_cols=18 Identities=44% Similarity=1.198 Sum_probs=16.4
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||++||||||||+
T Consensus 3 ~~Cf~CG~~GH~ardC~~ 20 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKE 20 (26)
T ss_dssp CBCTTTCCBSSCTTTTTC
T ss_pred CeeEeCCCCCcccccCCC
Confidence 459999999999999995
|
| >2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-08 Score=76.37 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||+.||++++|+.... ...||+||++||+|+|||+
T Consensus 25 ~~C~~Cg~~GH~a~~C~~~~~-------------------------------------~~~C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKLPPQ-------------------------------------PKKCHFCQSISHMVASCPL 64 (74)
T ss_dssp SCCTTTCCSSSCTTTCSSCCC-------------------------------------CCCCTTTCCTTSCGGGCTT
T ss_pred CcccccCCcCcCcccCCCCCC-------------------------------------CCccCCcCCcCCccCcCcC
Confidence 569999999999999975310 1239999999999999995
|
| >3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.5e-09 Score=80.29 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=38.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
-.|++|++.||.+++||.. ..+|.|+.. +|.+.... .......||+||++||+++|||+
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~-----~rcY~c~~~-----gh~~~~c~--------~p~~~~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI-----WRAYILVDD-----NEKAKPKV--------LPFHTIYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG-----TCCCCBC--------------------------CCCBCSSSSCBSSCGGGCSS
T ss_pred CCCCCCCCCCCccccCCCc-----ccccccccC-----Cccccccc--------CCCCCCeecccCCCCcCcccCCc
Confidence 4599999999999999875 357777742 22210000 00123459999999999999995
|
| >1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=8.6e-09 Score=67.39 Aligned_cols=19 Identities=37% Similarity=0.956 Sum_probs=17.1
Q ss_pred CCCcccCCCCCcccCCCCC
Q 011149 474 GGACFNCGKSGHRASECPN 492 (492)
Q Consensus 474 ~~~c~~cg~~gh~a~~cp~ 492 (492)
...||+|||.||||+|||+
T Consensus 10 ~~~C~~Cgk~GH~ardCP~ 28 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPK 28 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSS
T ss_pred CCeeeECCCCCcchhhCcC
Confidence 4569999999999999995
|
| >2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.6e-08 Score=81.16 Aligned_cols=75 Identities=12% Similarity=0.124 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CccC---CCCCCCCCCCCCCCCCCCcccCCCCCcccCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDD---DWLI---GGSRSSRSSSRDRSFGGACFNCGKSGHRASE 489 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~ 489 (492)
..|++|++.||.+++|+... .+..|++|+..++.... .|.. ....+....+..+..+..||+||+.||||+|
T Consensus 43 ~~C~~Cg~~GH~~~~C~~~~--~~~~C~~Cg~~GH~~~~Cp~~~~~y~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~a~d 120 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPHKW--KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDD 120 (124)
T ss_dssp SCSSSSSCSSSSTTTSCCCC--CCCSSSSSCSSCCCTTTCCCSTTSCCSSSCCCCCCCSCCCCCCCCTTTTSSSCTTTTT
T ss_pred ccccccCCCCCccccCcCcc--cCccCCCCCcCCcchhhCCCccccccccCccccccccccCCCCCCcCCCCCCCcCccc
Confidence 35788888888888887652 12567777755433221 1100 0000000001112235679999999999999
Q ss_pred CCC
Q 011149 490 CPN 492 (492)
Q Consensus 490 cp~ 492 (492)
||+
T Consensus 121 Cp~ 123 (124)
T 2lli_A 121 CKE 123 (124)
T ss_dssp SCC
T ss_pred CcC
Confidence 996
|
| >3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-08 Score=86.28 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=33.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||+.||.+++|+.... ...||+||++||+|+|||+
T Consensus 98 ~~C~~Cg~~GH~a~~C~~~~~-------------------------------------~~~C~~Cg~~GH~~r~Cp~ 137 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKLPPQ-------------------------------------PKKCHFCQSINHMVASCPL 137 (148)
T ss_dssp CCCTTTCCSSCCGGGCCSCCC-------------------------------------CCCCTTTCCSSCCGGGCTT
T ss_pred CcccEeCCccchhhhCCCCCC-------------------------------------CCcccccCCcCCEeccCcC
Confidence 569999999999999986411 1239999999999999995
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.1e-06 Score=91.05 Aligned_cols=167 Identities=20% Similarity=0.214 Sum_probs=112.9
Q ss_pred cEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEEE-EEEcCcccHHHH-HHHHHHHHccCCeEEEEeCChH
Q 011149 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKR 99 (492)
Q Consensus 22 q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~-l~~ll~~~~~~~~~iVF~~t~~ 99 (492)
.+..||.|...+-..+.+.|--+. +.+. .+.+.....+. .+......|... +.++...+..+.++||+|.|.+
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~V--v~IP---Tn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe 454 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMDV--VVVP---TNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIE 454 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCCE--EECC---CSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHH
T ss_pred HheecCCCchHHHHHHHHHhCCCE--EEcC---CCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHH
Confidence 577899999888777777775442 2221 22222222222 222334456554 4455556667899999999999
Q ss_pred HHHHHHHHHH----------------------------------------------------------------------
Q 011149 100 DADEVSLALT---------------------------------------------------------------------- 109 (492)
Q Consensus 100 ~~~~l~~~l~---------------------------------------------------------------------- 109 (492)
..+.|+..|.
T Consensus 455 ~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 534 (997)
T 2ipc_A 455 KSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAV 534 (997)
T ss_dssp HHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhh
Confidence 9999999988
Q ss_pred ------c-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCc-------------------C------
Q 011149 110 ------S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV-------------------D------ 157 (492)
Q Consensus 110 ------~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v-------------------~------ 157 (492)
+ +++..+|...-...+-+.+-++=+.| .|-|||+.+.||.||.-= .
T Consensus 535 ~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~G--aVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~ 612 (997)
T 2ipc_A 535 HTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSK--TVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELF 612 (997)
T ss_dssp HHHHHHHHCCCCCEECSSSHHHHHHHHHTTTSTT--CEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHH
T ss_pred hhhHHHHcCCCeeeccccchHHHHHHHHhcCCCC--eEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccc
Confidence 1 24444555543333333333333434 489999999999998521 1
Q ss_pred -------------------------------------------------EEEecCCCCChhHHHHHhhhcccCCCCCeEE
Q 011149 158 -------------------------------------------------LIIHYELPNDPETFVHRSGRTGRAGKEGTAI 188 (492)
Q Consensus 158 -------------------------------------------------~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i 188 (492)
|||-...+.|..-=.|-.||+||.|.+|.+.
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSr 692 (997)
T 2ipc_A 613 IKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSR 692 (997)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEE
T ss_pred cccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeE
Confidence 7999999999999999999999999999988
Q ss_pred EecChhh
Q 011149 189 LMFTSSQ 195 (492)
Q Consensus 189 ~l~~~~e 195 (492)
++++-.|
T Consensus 693 F~LSLeD 699 (997)
T 2ipc_A 693 FYVSFDD 699 (997)
T ss_dssp EEEESSS
T ss_pred EEEECCh
Confidence 8876544
|
| >1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A | Back alignment and structure |
|---|
Probab=98.47 E-value=8.1e-08 Score=67.78 Aligned_cols=19 Identities=37% Similarity=0.956 Sum_probs=17.0
Q ss_pred CCCcccCCCCCcccCCCCC
Q 011149 474 GGACFNCGKSGHRASECPN 492 (492)
Q Consensus 474 ~~~c~~cg~~gh~a~~cp~ 492 (492)
...||+|||.||||+|||+
T Consensus 23 ~~~C~~Cge~GH~ardCp~ 41 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPK 41 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTT
T ss_pred CCcceeCCCCCcccccCcC
Confidence 4569999999999999995
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.45 E-value=9e-07 Score=93.70 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=49.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEE--ecccccccCCCCC----cCEEE
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV--ATDVAARGLDIPN----VDLII 160 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLV--aT~~~~~Gidi~~----v~~VI 160 (492)
.++.+|||++|...++.+++.|.. +. ..+++.. .+|++++++|+.+. .||+ +|..+++|||+|+ +++||
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~-~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG-IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT-SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc-Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEE
Confidence 357899999999999999988864 22 3455553 46889999999865 4665 8999999999997 88999
Q ss_pred ecCCCC
Q 011149 161 HYELPN 166 (492)
Q Consensus 161 ~~~~P~ 166 (492)
++++|.
T Consensus 458 i~~lPf 463 (540)
T 2vl7_A 458 LAGLPY 463 (540)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999984
|
| >1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-07 Score=57.12 Aligned_cols=18 Identities=50% Similarity=1.145 Sum_probs=16.3
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..|||||++||+|+|||.
T Consensus 7 ~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CBCTTTSCBSSCGGGCCS
T ss_pred CEEEECCccccCHhHCcc
Confidence 459999999999999984
|
| >2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-06 Score=66.89 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=52.4
Q ss_pred EEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeecCccceeEeecCHHHHHHHHhhcCC
Q 011149 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (492)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~~~~ 354 (492)
+|++++.++ ++++.|.+|+++|+....+..++||+|.+++++ |||++|++.++++++.+..
T Consensus 1 ~~~~i~~Gr---k~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~----s~v~v~~~~~~~~~~~l~~ 61 (76)
T 2g0c_A 1 MKLYFNGGK---KKKIRAVDFVGTIAKIDGVSADDIGIITIMDNA----SYVEILNGKGPHVLKVMKN 61 (76)
T ss_dssp CEEEESCCC---C----CHHHHHHHHTSTTCCGGGEEEEEECSSC----EEEEECTTCHHHHHHHHTT
T ss_pred CEEEEeCCC---ccCCCHHHHHHHHHHccCCChhhccEEEEeCCc----EEEEECHHHHHHHHHHhcc
Confidence 368888888 889999999999999999999999999999998 8999999999999998765
|
| >2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.4e-06 Score=71.85 Aligned_cols=18 Identities=28% Similarity=0.709 Sum_probs=16.4
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..||+|++.||+|+|||+
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~ 82 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPS 82 (124)
T ss_dssp CSSSSSCSSCCCTTTCCC
T ss_pred ccCCCCCcCCcchhhCCC
Confidence 569999999999999995
|
| >2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.7e-06 Score=65.28 Aligned_cols=18 Identities=44% Similarity=1.027 Sum_probs=16.1
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||++||||+|||.
T Consensus 25 ~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp SCCTTTCCSSSCTTTCSS
T ss_pred CcccccCCcCcCcccCCC
Confidence 349999999999999983
|
| >2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.2e-06 Score=61.62 Aligned_cols=17 Identities=53% Similarity=1.316 Sum_probs=15.8
Q ss_pred CCcccCCCCCcccCCCC
Q 011149 475 GACFNCGKSGHRASECP 491 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp 491 (492)
..||+||++|||++|||
T Consensus 8 ~~C~kCGk~GH~~k~Cp 24 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCP 24 (55)
T ss_dssp CCCTTTCCTTSCGGGCS
T ss_pred CccccCCCcCcccccCC
Confidence 34999999999999999
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00012 Score=78.43 Aligned_cols=104 Identities=20% Similarity=0.260 Sum_probs=69.1
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc--cccccCCCCC--cCEEEec
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLIIHY 162 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~--~~~~Gidi~~--v~~VI~~ 162 (492)
.++.+|||+++....+++++.|. .+... ..-+++..++.+++++|+ ++-.||++|. .+.+|||+|+ ...||..
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~-~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~ 523 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVS-FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILA 523 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCC-SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHH-hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEE
Confidence 36789999999999999988876 22222 444556678999999999 7778999985 9999999985 5689988
Q ss_pred CCCCCh-----------------------------hHHHHHhhhcccCCCCCeEEEecCh
Q 011149 163 ELPNDP-----------------------------ETFVHRSGRTGRAGKEGTAILMFTS 193 (492)
Q Consensus 163 ~~P~~~-----------------------------~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (492)
.+|... ....|-+||.=|.-..--++++++.
T Consensus 524 ~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 524 GLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 877421 1126888998886544334455544
|
| >2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic} | Back alignment and structure |
|---|
Probab=97.74 E-value=9e-06 Score=53.26 Aligned_cols=17 Identities=59% Similarity=1.341 Sum_probs=15.7
Q ss_pred CcccCCCCCcccCCCCC
Q 011149 476 ACFNCGKSGHRASECPN 492 (492)
Q Consensus 476 ~c~~cg~~gh~a~~cp~ 492 (492)
.||+|+++||+|+|||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~ 18 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQ 18 (39)
T ss_dssp BCTTTCCBSSCTTTCCS
T ss_pred eeeccCCCCcccccCCC
Confidence 49999999999999994
|
| >2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus} | Back alignment and structure |
|---|
Probab=97.71 E-value=1.1e-05 Score=52.15 Aligned_cols=17 Identities=53% Similarity=1.339 Sum_probs=15.7
Q ss_pred CcccCCCCCcccCCCCC
Q 011149 476 ACFNCGKSGHRASECPN 492 (492)
Q Consensus 476 ~c~~cg~~gh~a~~cp~ 492 (492)
.||+|+++||+|+|||+
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 39999999999999995
|
| >2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=3e-05 Score=56.55 Aligned_cols=18 Identities=44% Similarity=1.027 Sum_probs=16.3
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..||+|+++||+|+|||.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 459999999999999993
|
| >2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=2.6e-05 Score=53.80 Aligned_cols=18 Identities=50% Similarity=1.145 Sum_probs=16.3
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..||+||+.||+|+|||+
T Consensus 7 ~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CBCTTTCCBTCCTTTCCC
T ss_pred CeeeecCCCCcChhhCcC
Confidence 459999999999999984
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.59 E-value=3.9e-05 Score=72.50 Aligned_cols=62 Identities=34% Similarity=0.589 Sum_probs=44.7
Q ss_pred CCCCChHHHHHHHHHh--CCC--CCcEEEEeeeCChHHHHHHHHHcCCCceEEeecccccccccceEE
Q 011149 1 MLAVGFEEDVELILEN--LPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL 64 (492)
Q Consensus 1 mL~~GF~~~l~~Il~~--~~~--~~q~ll~SAT~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 64 (492)
|++++|.+++..|+.. ++. +.|+++||||+|+.+.++++.++++|..|.+.. ......+|+|
T Consensus 186 ~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~i~q 251 (253)
T 1wrb_A 186 MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGR--VGSTSDSIKQ 251 (253)
T ss_dssp HHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-------------
T ss_pred HHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECC--CCCCcCCcee
Confidence 4578999999999995 454 789999999999999999999999998887642 2223344544
|
| >2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus} | Back alignment and structure |
|---|
Probab=97.57 E-value=2.3e-05 Score=56.79 Aligned_cols=18 Identities=44% Similarity=1.376 Sum_probs=16.3
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..||+|+++||||+|||+
T Consensus 5 ~~C~~Cg~~GH~a~~C~~ 22 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPK 22 (61)
T ss_dssp TBCSSSCCBTCCGGGCTT
T ss_pred CcccccCCCCeehhhCcC
Confidence 359999999999999995
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.53 E-value=1.8e-06 Score=88.83 Aligned_cols=248 Identities=16% Similarity=0.236 Sum_probs=132.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cccc-cCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~-Gidi~~v 156 (492)
..++||.+||++.+.++++.+.+ .+.+..++|+.+..++...+.. ..+|+|+|+ .+.+ -+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhc----CCCEEEEChHHHHHHHHhCCcccccC
Confidence 35899999999999999988875 2568889999988776655543 578999997 2222 3567888
Q ss_pred CEEEecC----CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH----HHH-------
Q 011149 157 DLIIHYE----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV----EDV------- 221 (492)
Q Consensus 157 ~~VI~~~----~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~----~~~------- 221 (492)
++||.=. +-.....-+.++-..-.. .....+++++.+-...++.+..........+.+... ..+
T Consensus 205 ~~lVlDEah~~~~~gf~~~~~~i~~~~~~-~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~ 283 (434)
T 2db3_A 205 RFVVLDEADRMLDMGFSEDMRRIMTHVTM-RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEV 283 (434)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHCTTS-CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEEC
T ss_pred CeEEEccHhhhhccCcHHHHHHHHHhcCC-CCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEe
Confidence 8887311 111222222222221111 234566666655444445554433322221111000 000
Q ss_pred -HHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCC---------CCCCCCcccccCCCCeEEEEE
Q 011149 222 -LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF---------SRPPSSRSLINHEQGWVTLQL 291 (492)
Q Consensus 222 -~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~~~---------~~~~~~~~l~~~~~~~~~~~~ 291 (492)
.......+.+.+...... ...|..+.+ ..+.++..|... ++ ++..+...+..++.+...+++
T Consensus 284 ~~~~k~~~l~~~l~~~~~~-~lVF~~t~~------~a~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLv 355 (434)
T 2db3_A 284 NKYAKRSKLIEILSEQADG-TIVFVETKR------GADFLASFLSEK-EFPTTSIHGDRLQSQREQALRDFKNGSMKVLI 355 (434)
T ss_dssp CGGGHHHHHHHHHHHCCTT-EEEECSSHH------HHHHHHHHHHHT-TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEE
T ss_pred CcHHHHHHHHHHHHhCCCC-EEEEEeCcH------HHHHHHHHHHhC-CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 001122233333322222 222211110 011222222221 11 111111223345667788999
Q ss_pred eecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecC--HHHHHHHHh
Q 011149 292 TRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP--EEIAKELLN 350 (492)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~--~~~a~~~i~ 350 (492)
+++. +.+|+|..++..+|+++.|...++ |||+.+....+...+|++.. ...+..+.+
T Consensus 356 aT~v--~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~ 418 (434)
T 2db3_A 356 ATSV--ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVK 418 (434)
T ss_dssp ECGG--GTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHH
T ss_pred Echh--hhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHH
Confidence 9997 789999999999999888765544 78888776666666777743 234444444
|
| >1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A | Back alignment and structure |
|---|
Probab=97.40 E-value=4.4e-05 Score=54.09 Aligned_cols=18 Identities=56% Similarity=1.184 Sum_probs=16.3
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
..||+|++.||+|+|||.
T Consensus 13 ~~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp CBCTTTCCBSSCGGGCSS
T ss_pred cceeeeCCCCcChhhcCC
Confidence 459999999999999984
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00018 Score=74.58 Aligned_cols=242 Identities=12% Similarity=0.083 Sum_probs=62.4
Q ss_pred eEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc-------ccCCCCCc
Q 011149 90 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA-------RGLDIPNV 156 (492)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~-------~Gidi~~v 156 (492)
++||.+||+..+.+++..+.. .+.+....++.... .......+|+|+|+-.- ..+++.++
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 236 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGC
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccCCCCEEEECchHHHHHHHhcCCcCcccC
Confidence 899999999999999777664 23444444443211 11123457999997322 35777889
Q ss_pred CEEEecCCC--CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHH-----------
Q 011149 157 DLIIHYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE----------- 223 (492)
Q Consensus 157 ~~VI~~~~P--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~----------- 223 (492)
.+||.=..- .+...|..+.-+.-+.-.....+++++.+-...+..+.......+..+.+........
T Consensus 237 ~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 316 (479)
T 3fmp_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS 316 (479)
T ss_dssp CEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC------------------
T ss_pred CEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCC
Confidence 988831110 0001232222233333234456666655433334444444444433332222111111
Q ss_pred --HHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCccc
Q 011149 224 --SSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFS 298 (492)
Q Consensus 224 --~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 298 (492)
.....+...+.......+..|..+ ++.+.+.+....+...+.|.. +++..+...+..+..+...++++++. .
T Consensus 317 ~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~-~~~~~R~~~~~~f~~g~~~iLv~T~~--~ 393 (479)
T 3fmp_B 317 RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGE-MMVEQRAAVIERFREGKEKVLVTTNV--C 393 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCC-CCHHHHHHHHHHHHcCCCcEEEEccc--c
Confidence 111111111211112222333322 333333333333333444432 44444455566778888999999987 6
Q ss_pred cCCCChhHHHHHHhhhCCCCc----------CccccEEEeecCccceeEeecC
Q 011149 299 RGFMSARSVMGFLSDVYPTAA----------DEIGKIHIIADDRVQGAVFDLP 341 (492)
Q Consensus 299 ~~~~~~~~i~~~i~~~~~~~~----------~~ig~i~~~~~~~~~gs~fdv~ 341 (492)
..|++..++..+|+.+.|... ..+||..+....+...++++-+
T Consensus 394 ~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~ 446 (479)
T 3fmp_B 394 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446 (479)
T ss_dssp -----------------------------------------------------
T ss_pred ccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCc
Confidence 889999999999998887432 2378888876655445555544
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0029 Score=61.43 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=84.1
Q ss_pred cccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHH-cccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc
Q 011149 71 ATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~ 148 (492)
.+.|+.+|.++|..+. .+.++|||+...+..+.+..++. +.+...-+.|.....+ .+. .+....|.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECCCC
Confidence 4679999999998874 35699999999999999999988 4788888888754432 221 234556655566666
Q ss_pred ccCC-----CCCcCEEEecCCCCChhH-HHHHhhhcccCC----CCCeEEEecChhh
Q 011149 149 RGLD-----IPNVDLIIHYELPNDPET-FVHRSGRTGRAG----KEGTAILMFTSSQ 195 (492)
Q Consensus 149 ~Gid-----i~~v~~VI~~~~P~~~~~-y~qr~GR~gR~g----~~g~~i~l~~~~e 195 (492)
-|+| +...+.||.||.-|++.. .+|.+-|+.|.+ ++-.+|.|++...
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 6675 678899999999999877 488777777752 4556777766543
|
| >3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00012 Score=63.15 Aligned_cols=19 Identities=47% Similarity=1.088 Sum_probs=16.8
Q ss_pred CCCcccCCCCCcccCCCCC
Q 011149 474 GGACFNCGKSGHRASECPN 492 (492)
Q Consensus 474 ~~~c~~cg~~gh~a~~cp~ 492 (492)
+..|||||+.||+|++||+
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCS
T ss_pred CCcccEeCCccchhhhCCC
Confidence 4459999999999999984
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0011 Score=66.16 Aligned_cols=240 Identities=12% Similarity=0.122 Sum_probs=65.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidi~~v 156 (492)
..++||.|||+..+.++++.+.+ .+.+..++|+.+..+....+. ..+|+|+|+-. ...+++..+
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~ 163 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKI 163 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 46899999999999999988764 367888999988776665554 35799999621 223556778
Q ss_pred CEEEecCC----CCC-hhHHHHHhhhcccCCCCCeEEEecChhhHHHH-HHHHHHhCCCceecCCCC---HHHHHH----
Q 011149 157 DLIIHYEL----PND-PETFVHRSGRTGRAGKEGTAILMFTSSQRRTV-RSLERDVGCKFEFVSPPV---VEDVLE---- 223 (492)
Q Consensus 157 ~~VI~~~~----P~~-~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~-~~l~~~~~~~~~~~~~p~---~~~~~~---- 223 (492)
++||.=.. .++ ...+.+..... .....+++++.+-...+ +.+...+........... ...+..
T Consensus 164 ~~vIiDEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (394)
T 1fuu_A 164 KMFILDEADEMLSSGFKEQIYQIFTLL----PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVN 239 (394)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHS----CTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------
T ss_pred cEEEEEChHHhhCCCcHHHHHHHHHhC----CCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEE
Confidence 88773211 111 11222222111 23344555554432233 233333332221110000 000000
Q ss_pred -----HHHHHHHHHhccCCccchhhhHHH---HHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecC
Q 011149 224 -----SSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDS 295 (492)
Q Consensus 224 -----~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 295 (492)
.....+...+.......+..|... ++.+.+.+....+.....|.. ++...+...+..++.+...++++++.
T Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~r~~~~~~f~~~~~~vlv~T~~ 318 (394)
T 1fuu_A 240 VEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD-LPQQERDTIMKEFRSGSSRILISTDL 318 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCC-CCHHHHHHHHHHHHCCCCcEEEECCh
Confidence 011111111111111222223222 333333333333323333321 33333334455567777889999886
Q ss_pred ccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEee
Q 011149 296 AFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFD 339 (492)
Q Consensus 296 ~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fd 339 (492)
...|++..++..+|....+..... +||+.+....+...++++
T Consensus 319 --~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 364 (394)
T 1fuu_A 319 --LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 364 (394)
T ss_dssp ------------------------------------------------
T ss_pred --hhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEc
Confidence 577999999988888876654433 788777644433334443
|
| >3i31_A Heat resistant RNA dependent ATPase; RNA helicase, RNA recognition motif, ATP-binding, helicase, nucleotide-binding; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0011 Score=49.66 Aligned_cols=77 Identities=25% Similarity=0.337 Sum_probs=59.4
Q ss_pred CCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCccccEEEeecCccceeEeecCHHHHHHHHhhcCC
Q 011149 275 SSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (492)
Q Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~~~~ 354 (492)
.++||+++++||+|+.+.-. .++..-++.+|..... +||+|..... ++++|++.+... .-
T Consensus 2 ~~~SLLTGEEGw~Tlkl~G~------rLS~~R~VAlLk~aG~----~iGkI~~~~~----gayaDlr~e~l~------~~ 61 (88)
T 3i31_A 2 AERSLLTGEEGWRTYKATGP------RLSLPRLVALLKGQGL----EVGKVAEAEG----GFYVDLRPEARP------EV 61 (88)
T ss_dssp CCBCTTTCCBSCEEEEEECT------TCCHHHHHHHHHHTTC----CEEEEEEETT----EEEEEECTTCCC------CC
T ss_pred CcccccccCcceEEEEEecc------cccHHHHHHHHHHccc----ccccEEeccc----eeEEecChHHcc------cc
Confidence 46899999999999999643 4899999999987654 8999997544 599999988765 22
Q ss_pred CCCceeeeccCCCCCCC
Q 011149 355 PGNTISKITKLPALQDD 371 (492)
Q Consensus 355 ~~i~~~~~~~lp~~~~~ 371 (492)
.++.++....++.+.+.
T Consensus 62 ~~~~~e~A~~v~~~~E~ 78 (88)
T 3i31_A 62 AGLRLEPARRVEGLLEI 78 (88)
T ss_dssp TTCEEEECCSCCCCC--
T ss_pred ccceehhhhhccccccC
Confidence 57788887777777654
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0047 Score=65.23 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=53.1
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEec--ccccccCCCC-----CcCEE
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT--DVAARGLDIP-----NVDLI 159 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT--~~~~~Gidi~-----~v~~V 159 (492)
.++.+|||+++....+++++.+ ...+..-.-+++. .++++.|+...-.||++| ..+.+|||+| .+..|
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~~--~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSRI--SLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTTC--CSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CCCCEEEEecCHHHHHHHHHhc--CCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 3579999999999999998732 2233322234553 456677743334799998 6999999999 46789
Q ss_pred EecCCCC
Q 011149 160 IHYELPN 166 (492)
Q Consensus 160 I~~~~P~ 166 (492)
|...+|.
T Consensus 467 iI~~lPf 473 (551)
T 3crv_A 467 VIVGIPY 473 (551)
T ss_dssp EEESCCC
T ss_pred EEEcCCC
Confidence 9888775
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00013 Score=77.79 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=53.2
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhh--cCCCeEEEEecc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGF--RQGKFTVLVATD 145 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F--~~g~~~iLVaT~ 145 (492)
....+||.+|++..+++.+..|.. ++.+..++++++..++..++..+ ..+..+|||+|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 467999999999999999999886 78899999999999999998888 567899999998
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=96.69 E-value=3.1e-05 Score=82.64 Aligned_cols=243 Identities=15% Similarity=0.139 Sum_probs=120.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc---------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc-----cc--cCC
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI---------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----AR--GLD 152 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~---------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-----~~--Gid 152 (492)
.++||.+||++.+.++++.+... +.+..++++....... +.+.....+|||+|+-. .+ ...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM---NKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH---HHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHH---HHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 48999999999999999888752 3466677776654433 33433467899999721 11 345
Q ss_pred CCCcCEEEec------CCC--CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceec-----------
Q 011149 153 IPNVDLIIHY------ELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV----------- 213 (492)
Q Consensus 153 i~~v~~VI~~------~~P--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~----------- 213 (492)
+..+++||.= +.. .+.......+-+..........+++++.+-...++.+..........+
T Consensus 173 ~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 252 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252 (579)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccc
Confidence 6778887731 111 112222222222222222345566666553333343333322221110
Q ss_pred ----------CCCCHHHHHHHHHHHHHHHhcc-CCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc--CC---------C
Q 011149 214 ----------SPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLS--GF---------S 271 (492)
Q Consensus 214 ----------~~p~~~~~~~~~~~~~~~~l~~-~~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~--~~---------~ 271 (492)
..+.........+..+...+.. ........|..+.+. .+.++..|.... ++ +
T Consensus 253 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~------~~~l~~~L~~~~~~~~~v~~~hg~~~ 326 (579)
T 3sqw_A 253 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKF------TSFLCSILKNEFKKDLPILEFHGKIT 326 (579)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHH------HHHHHHHHHHHHTTTSCEEEESTTSC
T ss_pred cccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHH------HHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 0011112222233333333332 111122222221110 122222332221 11 1
Q ss_pred CCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCH
Q 011149 272 RPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPE 342 (492)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~ 342 (492)
+..+.+.+..++.+...++++++. +..|+|..++..+|....|..... +||+.+....+...+++.-.+
T Consensus 327 ~~~R~~~~~~F~~g~~~vLVaT~~--~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 399 (579)
T 3sqw_A 327 QNKRTSLVKRFKKDESGILVCTDV--GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE 399 (579)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGG--GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred HHHHHHHHHHhhcCCCeEEEEcch--hhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccH
Confidence 101111223345677889999987 688999998888888888766554 677766654444445555443
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00024 Score=74.74 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=60.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc------ccCCCCCcCEE
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPNVDLI 159 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~------~Gidi~~v~~V 159 (492)
....+||.+|++..+++....|.. .+.+..+|+..+..++..++..+..+..+|||+|+--- .-++..++.+|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 457899999999999999999886 68899999999999999999999999999999997311 22334566666
Q ss_pred E
Q 011149 160 I 160 (492)
Q Consensus 160 I 160 (492)
|
T Consensus 144 V 144 (523)
T 1oyw_A 144 A 144 (523)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=96.46 E-value=5.2e-05 Score=80.44 Aligned_cols=244 Identities=16% Similarity=0.130 Sum_probs=120.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc---------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc-----cc--cCC
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI---------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----AR--GLD 152 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~---------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-----~~--Gid 152 (492)
.++||.+||++.+.++++.+... +.+..++++....... +.+.....+|||+|+-. .+ ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM---NKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH---HHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHH---HHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 38999999999999999888752 3466677776654433 33333467899999732 11 234
Q ss_pred CCCcCEEEecC----CCC----ChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceec-----------
Q 011149 153 IPNVDLIIHYE----LPN----DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV----------- 213 (492)
Q Consensus 153 i~~v~~VI~~~----~P~----~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~----------- 213 (492)
+..+++||.=. +-+ +...+...+-+..........+++++.+-...++.+..........+
T Consensus 224 ~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (563)
T 3i5x_A 224 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 303 (563)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcc
Confidence 67788877311 111 12222222222222222345566665543333333333322221110
Q ss_pred ----------CCCCHHHHHHHHHHHHHHHhccC-CccchhhhHHHHHHHHhhhCHHHHHHHHHHHc--CC---------C
Q 011149 214 ----------SPPVVEDVLESSAEQVVATLNGV-HPESVEFFTPTAQRLIEEKGTDALAAALAQLS--GF---------S 271 (492)
Q Consensus 214 ----------~~p~~~~~~~~~~~~~~~~l~~~-~~~~~~~f~~~a~~l~~~~~~~~l~~al~~~~--~~---------~ 271 (492)
..+............+...+... .......|..+.+ ..+.++..|.... ++ +
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~------~~~~l~~~L~~~~~~~~~v~~~h~~~~ 377 (563)
T 3i5x_A 304 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVK------FTSFLCSILKNEFKKDLPILEFHGKIT 377 (563)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHH------HHHHHHHHHHHHHTTTSCEEEESTTSC
T ss_pred ccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHH------HHHHHHHHHHHhccCCceEEEecCCCC
Confidence 00111122222233333333221 1112222211110 0112222222221 11 1
Q ss_pred CCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHH
Q 011149 272 RPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEE 343 (492)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~ 343 (492)
+..+.+.+..+..+...++++++. ...|+|..++..+|+...|..... +||..+....+...+++.-.+.
T Consensus 378 ~~~R~~~~~~f~~g~~~vLvaT~~--~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 451 (563)
T 3i5x_A 378 QNKRTSLVKRFKKDESGILVCTDV--GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDEL 451 (563)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGG--GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred HHHHHHHHHHHhcCCCCEEEEcch--hhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHH
Confidence 101111223445677889999987 688999998888888888766654 7887776544444456655443
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.028 Score=58.67 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=50.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----cccc-C-CCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~G-i-di~~ 155 (492)
..++||.|||+..+.+++..+.. .+.+..+||+.+...+...+.. ..+|+|+|+- +..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE----DNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----HCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----CCCEEEECHHHHHHHHhcCccccccc
Confidence 57899999999999999888874 4678999999866554333322 4679999972 1222 3 5667
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888773
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0002 Score=72.37 Aligned_cols=241 Identities=11% Similarity=0.099 Sum_probs=111.7
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cc-cccCCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPN 155 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~-~~Gidi~~ 155 (492)
...++||.+||+..+.++++.+... +.+..++++...... ++.+..+..+|+|+|+ .+ ...+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 3568999999999999999988752 456667777655443 3444556778999996 22 23356677
Q ss_pred cCEEEecCC----CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCCCH----HH-------
Q 011149 156 VDLIIHYEL----PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV----ED------- 220 (492)
Q Consensus 156 v~~VI~~~~----P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~----~~------- 220 (492)
+++||.=.. .++....+..+ -+.-.....+++++.+-...+..+.+........+..... ..
T Consensus 184 ~~~vViDEah~~~~~~~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (414)
T 3eiq_A 184 IKMFVLDEADEMLSRGFKDQIYDI---FQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN 260 (414)
T ss_dssp CCEEEECSHHHHHHTTTHHHHHHH---HTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEE
T ss_pred CcEEEEECHHHhhccCcHHHHHHH---HHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEE
Confidence 887773211 01111111111 1111234556666655333333332222222211111000 00
Q ss_pred --HHHHHHHHHHHHhccCCccchhhhH---HHHHHHHhhhCHHHHHHHHHHHcCCCC---------CCCCcccccCCCCe
Q 011149 221 --VLESSAEQVVATLNGVHPESVEFFT---PTAQRLIEEKGTDALAAALAQLSGFSR---------PPSSRSLINHEQGW 286 (492)
Q Consensus 221 --~~~~~~~~~~~~l~~~~~~~~~~f~---~~a~~l~~~~~~~~l~~al~~~~~~~~---------~~~~~~l~~~~~~~ 286 (492)
..+.....+...+.......+..|. ..++.+. ..|.. .++.. ..+...+..++.+.
T Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~---------~~l~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 330 (414)
T 3eiq_A 261 VEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLT---------EKMHA-RDFTVSAMHGDMDQKERDVIMREFRSGS 330 (414)
T ss_dssp CSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHH---------HHHHT-TTCCCEEC---CHHHHHHHHHHHHSCC-
T ss_pred eChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHH---------HHHHh-cCCeEEEecCCCCHHHHHHHHHHHHcCC
Confidence 0011222333333333222222222 1122221 11111 11110 00111123455677
Q ss_pred EEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccceeEeecCHHHH
Q 011149 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIA 345 (492)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~fdv~~~~a 345 (492)
..++++++. ...|++..++..+|....+..... +||..+....+...++++-.+...
T Consensus 331 ~~vlv~T~~--~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 391 (414)
T 3eiq_A 331 SRVLITTDL--LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRT 391 (414)
T ss_dssp --CEEECSS--CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHH
T ss_pred CcEEEECCc--cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHH
Confidence 889999987 678999988888888777655443 788877655444455665554433
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.00043 Score=69.30 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=53.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------cccCCCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidi~~ 155 (492)
..++||.|||+..++++++.+.+ .+.+..++|+.+..+....+. .+..+|+|+|+-. ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh---cCCCCEEEECHHHHHHHHHcCCccccc
Confidence 45899999999999999888764 367888999988776655443 3556899999721 23456778
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888874
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.059 Score=56.26 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=47.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc-----ccc-C-CCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----ARG-L-DIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-----~~G-i-di~~ 155 (492)
..++||.+||+..+.++++.+.. .+.+..+||+.+...+...+.. ..+|+|+|+-. ..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCCEEEECHHHHHHHHHhCccccccc
Confidence 57899999999999999888875 4778899999876654433332 46799999722 222 3 6778
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888773
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.013 Score=64.19 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=71.0
Q ss_pred cHHH-HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 73 SKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 73 ~k~~-~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
-|.. .+..++..+..+.++||.+||+..|.++++.+.+ .+.+..+||+++..++..+++.+.+|..+|+|+|..
T Consensus 401 GKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ 480 (780)
T 1gm5_A 401 GKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHA 480 (780)
T ss_dssp SHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTT
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 4433 3333444444568999999999999999988874 367899999999999999999999999999999974
Q ss_pred -ccccCCCCCcCEEEe
Q 011149 147 -AARGLDIPNVDLIIH 161 (492)
Q Consensus 147 -~~~Gidi~~v~~VI~ 161 (492)
+...+++.++.+||.
T Consensus 481 ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 481 LIQEDVHFKNLGLVII 496 (780)
T ss_dssp HHHHCCCCSCCCEEEE
T ss_pred HHhhhhhccCCceEEe
Confidence 344578889998884
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.00011 Score=74.33 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=51.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----c-cccCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~-~~Gidi~~v~ 157 (492)
.++||.+||++.+.++++.+.+ .+.+..+||+.+..+....+.. ..+|+|+|+- + ...+++..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhC----CCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 4699999999999999998874 3678889999887766554432 5689999972 1 2235677888
Q ss_pred EEEe
Q 011149 158 LIIH 161 (492)
Q Consensus 158 ~VI~ 161 (492)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8773
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.016 Score=58.41 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=64.8
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccccc----ccCCC
Q 011149 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA----RGLDI 153 (492)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~----~Gidi 153 (492)
+.......++||.+||++.+.++++.+.. .+.+..+||+++..++...++.+..+..+|+|+|+-.- .-++.
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 33334667999999999999999999986 56899999999999998888999888899999997321 12566
Q ss_pred CCcCEEEe
Q 011149 154 PNVDLIIH 161 (492)
Q Consensus 154 ~~v~~VI~ 161 (492)
.++++||.
T Consensus 138 ~~~~~iVi 145 (414)
T 3oiy_A 138 KRFDFVFV 145 (414)
T ss_dssp CCCSEEEE
T ss_pred ccccEEEE
Confidence 68888874
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0011 Score=66.91 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=52.1
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccc-ccCCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPN 155 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~-~Gidi~~ 155 (492)
...++||.+||++.+.++++.+.. .+.+..++|+....+....+.. ..+|+|+|+ .+. ..+++..
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc----CCCEEEcCHHHHHHHHHhCCccHhh
Confidence 356899999999999999998874 2567788898887766555543 457999996 222 3466777
Q ss_pred cCEEE
Q 011149 156 VDLII 160 (492)
Q Consensus 156 v~~VI 160 (492)
+++||
T Consensus 180 ~~~vV 184 (410)
T 2j0s_A 180 IKMLV 184 (410)
T ss_dssp CCEEE
T ss_pred eeEEE
Confidence 88877
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.002 Score=64.60 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=50.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----c-cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~-~~Gidi~~v 156 (492)
..++||.+||+..++++++.+.. .+.+..++|+.........+ ....+|+|+|+- + ....++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL----NETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHh----cCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 45899999999999999988874 35678889988765543332 236789999962 2 233567788
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
++||.
T Consensus 165 ~~vIi 169 (400)
T 1s2m_A 165 SLFIM 169 (400)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88874
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.087 Score=48.80 Aligned_cols=120 Identities=16% Similarity=0.203 Sum_probs=75.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----cc-cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~-~~Gidi~~v 156 (492)
..++||.+||++.+.++++.+.. .+.+..++|+.+...+...+.. ..+|+|+|+ .+ ...+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999999999888764 4678889999988877666654 578999997 22 224577888
Q ss_pred CEEEecCC----CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 157 DLIIHYEL----PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 157 ~~VI~~~~----P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
.+||.=+. .+.....+..+-+.- .+...+++++.+-...++.+.+.+..++..+.
T Consensus 178 ~~lViDEah~l~~~~~~~~~~~i~~~~---~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~ 236 (242)
T 3fe2_A 178 TYLVLDEADRMLDMGFEPQIRKIVDQI---RPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN 236 (242)
T ss_dssp CEEEETTHHHHHHTTCHHHHHHHHTTS---CSSCEEEEEESCCCHHHHHHHHHHCSSCEEEE
T ss_pred cEEEEeCHHHHhhhCcHHHHHHHHHhC---CccceEEEEEeecCHHHHHHHHHHCCCCEEEE
Confidence 88874221 111122222222211 23456667666655555666555554554443
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.00097 Score=65.85 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=50.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------cccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidi~~v 156 (492)
..++||.+|++..++++++.+.. .+.+..++++.........+. ..+|+|+|+-. ...+++.++
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~~ 148 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKNV 148 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTSC
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCcccccC
Confidence 56899999999999999998875 356778888887665544443 46799999721 223567788
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
++||.
T Consensus 149 ~~iIi 153 (367)
T 1hv8_A 149 KYFIL 153 (367)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88773
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.14 Score=47.59 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=71.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc------ccccCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidi~~v~ 157 (492)
.++||.+||++.+.++++.+.. .+.+..++|+.+..+....+. ...+|+|+|+- ....+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQ----MGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHS----SCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhC----CCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 4899999999999999988874 256778898887665544442 25789999972 12235777888
Q ss_pred EEEecCC----CCC-hhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011149 158 LIIHYEL----PND-PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (492)
Q Consensus 158 ~VI~~~~----P~~-~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~ 215 (492)
+||.=.. .+. ...+.....+..........+++++.+-...++.+.+.+...+..+.+
T Consensus 177 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 177 YIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred EEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 8773111 011 122222222211111124456666655444555565555445544433
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.038 Score=63.01 Aligned_cols=88 Identities=15% Similarity=0.196 Sum_probs=68.4
Q ss_pred cHHHHH-HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-
Q 011149 73 SKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV- 146 (492)
Q Consensus 73 ~k~~~l-~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~- 146 (492)
-|.... ..++.......++||.+||++.|.++++.+.. .+.+..+||+++..++...++.+.++..+|||+|+-
T Consensus 105 GKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~r 184 (1104)
T 4ddu_A 105 GKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQF 184 (1104)
T ss_dssp CHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHH
T ss_pred cHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHH
Confidence 454432 33344445667899999999999999999987 357899999999988888999999998999999972
Q ss_pred ----ccccCCCCCcCEEEe
Q 011149 147 ----AARGLDIPNVDLIIH 161 (492)
Q Consensus 147 ----~~~Gidi~~v~~VI~ 161 (492)
+.. +++.++++||.
T Consensus 185 L~~~l~~-l~~~~l~~lVi 202 (1104)
T 4ddu_A 185 VSKNREK-LSQKRFDFVFV 202 (1104)
T ss_dssp HHHSHHH-HHTSCCSEEEE
T ss_pred HHHHHHh-hcccCcCEEEE
Confidence 222 55678888884
|
| >1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.014 Score=37.90 Aligned_cols=20 Identities=0% Similarity=-0.170 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGG 435 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~ 435 (492)
..||+||+.|||+++|+...
T Consensus 11 ~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSSC
T ss_pred CeeeECCCCCcchhhCcCCc
Confidence 67999999999999999763
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.071 Score=48.43 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=52.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc------ccccCCCCCc
Q 011149 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNV 156 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidi~~v 156 (492)
.++||.+||++.++++++.+.+ .+.+..++|+.+..++...+. ++..+|+|+|+- ....+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 4899999999999999888764 367888999988776655443 345689999972 1234667788
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.16 Score=46.39 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=48.2
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCc
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v 156 (492)
...++||.+||++.+.++++.+.. .+.+..++|+.+...+...+.. ..+|+|+|+ .....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISK----GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHS----CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 356799999999999999998875 3678888888766654444432 478999997 22335667888
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88774
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.19 Score=46.84 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=70.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----cc--ccCCCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA--RGLDIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~--~Gidi~~ 155 (492)
..++||.+||++.+.++++.+.. .+.+..++|+.+...+...+.. ..+|+|+|+- +. ..+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK----KPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHT----CCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCcCccc
Confidence 35799999999999999988764 3678889999887665554432 6789999962 11 4567788
Q ss_pred cCEEEecCC----CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCcee
Q 011149 156 VDLIIHYEL----PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (492)
Q Consensus 156 v~~VI~~~~----P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (492)
+++||.=+. -.+....+.++-+.- .....+++++.+-...++.+.+.+..++..
T Consensus 187 ~~~lViDEah~l~~~~~~~~l~~i~~~~---~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~ 244 (249)
T 3ber_A 187 LKYLVMDEADRILNMDFETEVDKILKVI---PRDRKTFLFSATMTKKVQKLQRAALKNPVK 244 (249)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHSS---CSSSEEEEEESSCCHHHHHHHHHHCSSCEE
T ss_pred cCEEEEcChhhhhccChHHHHHHHHHhC---CCCCeEEEEeccCCHHHHHHHHHHCCCCEE
Confidence 888774221 011112222232221 223455666555444455555554444433
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.12 Score=46.30 Aligned_cols=117 Identities=20% Similarity=0.130 Sum_probs=69.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc------ccccCCCCCcCE
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVDL 158 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidi~~v~~ 158 (492)
..++||.+||++.+.++++.+.. .+.+..++|+.+...+...+.. ..+|+|+|+- ....+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 46799999999999999999885 3578889998876555444433 5679999961 123466778888
Q ss_pred EEecCC----CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCce
Q 011149 159 IIHYEL----PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (492)
Q Consensus 159 VI~~~~----P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 211 (492)
||.=+. ..+....+..+=+ .-.....+++++.+-...++.+.+.+..++.
T Consensus 148 iViDEah~~~~~~~~~~~~~i~~---~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~ 201 (207)
T 2gxq_A 148 AVLDEADEMLSMGFEEEVEALLS---ATPPSRQTLLFSATLPSWAKRLAERYMKNPV 201 (207)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHH---TSCTTSEEEEECSSCCHHHHHHHHHHCSSCE
T ss_pred EEEEChhHhhccchHHHHHHHHH---hCCccCeEEEEEEecCHHHHHHHHHHcCCCe
Confidence 774211 1111222222211 1123455666665544445555554443433
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.14 Score=58.67 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=66.6
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-cccccCCCCC
Q 011149 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARGLDIPN 155 (492)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-~~~~Gidi~~ 155 (492)
+.....+.+++|.|||+..+.+.++.+.+. +.+..+++..+..++..+++.+.+|..+|+|+|. .+...+.+.+
T Consensus 646 ~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 646 FLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp HHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred HHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 333445679999999999999999988742 5678899999999999999999999999999995 4555678888
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+.+||.
T Consensus 726 l~lvIi 731 (1151)
T 2eyq_A 726 LGLLIV 731 (1151)
T ss_dssp EEEEEE
T ss_pred cceEEE
Confidence 888873
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=93.79 E-value=0.0016 Score=65.50 Aligned_cols=83 Identities=8% Similarity=0.023 Sum_probs=50.6
Q ss_pred ccHHHH-HHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEE
Q 011149 72 TSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (492)
Q Consensus 72 ~~k~~~-l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iL 141 (492)
.-|..+ +..++..+. ...++||.+||+..+.++++.+.+ .+.+...+++.... .......+|+
T Consensus 75 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~iv 147 (412)
T 3fht_A 75 TGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIV 147 (412)
T ss_dssp SCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCC-------TTCCCCCSEE
T ss_pred chHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchh-------hhhcCCCCEE
Confidence 345443 333444432 234899999999999999887764 24455555553321 1123356799
Q ss_pred Eecccc-------cccCCCCCcCEEEe
Q 011149 142 VATDVA-------ARGLDIPNVDLIIH 161 (492)
Q Consensus 142 VaT~~~-------~~Gidi~~v~~VI~ 161 (492)
|+|+-. ...+++.++++||.
T Consensus 148 v~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 148 IGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp EECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred EECchHHHHHHHhcCCcChhhCcEEEE
Confidence 999722 13456678888773
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.1 Score=47.91 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=58.4
Q ss_pred ccHHHH-HHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEE
Q 011149 72 TSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (492)
Q Consensus 72 ~~k~~~-l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iL 141 (492)
.-|... +..++..+. ...++||.+||++.++++++.+.. .+.+..++|+.+..++...++ ..+|+
T Consensus 72 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~Ii 146 (230)
T 2oxc_A 72 TGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-----KCHIA 146 (230)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-----SCSEE
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-----CCCEE
Confidence 456543 333444331 246899999999999999998874 356788999988777655543 46899
Q ss_pred Eecccc------cccCCCCCcCEEEe
Q 011149 142 VATDVA------ARGLDIPNVDLIIH 161 (492)
Q Consensus 142 VaT~~~------~~Gidi~~v~~VI~ 161 (492)
|+|+-. ...+++.++++||.
T Consensus 147 v~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 147 VGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp EECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred EECHHHHHHHHhcCCcccccCCEEEe
Confidence 999721 23456777887773
|
| >3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.031 Score=42.76 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=2.5
Q ss_pred cccCCCCCcccCCC
Q 011149 477 CFNCGKSGHRASEC 490 (492)
Q Consensus 477 c~~cg~~gh~a~~c 490 (492)
||+|+++||+++||
T Consensus 27 cY~c~~~gh~~~~c 40 (83)
T 3nyb_B 27 AYILVDDNEKAKPK 40 (83)
T ss_dssp CCCBC---------
T ss_pred ccccccCCcccccc
Confidence 45555555554444
|
| >1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A | Back alignment and structure |
|---|
Probab=93.10 E-value=0.094 Score=36.70 Aligned_cols=20 Identities=0% Similarity=-0.170 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGG 435 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~ 435 (492)
..|++||+.|||+++|+...
T Consensus 24 ~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TBCSSSCCBSSCGGGCTTCC
T ss_pred CcceeCCCCCcccccCcCCc
Confidence 67999999999999999763
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.43 Score=43.68 Aligned_cols=70 Identities=11% Similarity=0.240 Sum_probs=49.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----ccc--cCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR--GLDIP 154 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~--Gidi~ 154 (492)
...++||.+||++.+.++++.+... +.+..++|+.+.......+ ...+|+|+|+- +.+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999999999988752 6788889987665544433 25689999972 122 35667
Q ss_pred CcCEEEe
Q 011149 155 NVDLIIH 161 (492)
Q Consensus 155 ~v~~VI~ 161 (492)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 8887774
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.0031 Score=62.84 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=45.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------cccCCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidi~~ 155 (492)
...++||.+||+..+.++++.+.+. +.+..++++... .......+|+|+|+-. ...+++.+
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 145 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE--------KNKQINAQVIVGTPGTVLDLMRRKLMQLQK 145 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSC--------TTSCBCCSEEEECHHHHHHHHHTTCBCCTT
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchh--------hhccCCCCEEEEcHHHHHHHHHcCCccccc
Confidence 3468999999999999999988752 345556655321 1122356799999732 33456788
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 146 ~~~iIi 151 (395)
T 3pey_A 146 IKIFVL 151 (395)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888773
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=92.51 E-value=0.31 Score=43.42 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=50.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----cc-ccCCCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~-~Gidi~~ 155 (492)
..++||.+||++.++++++.+.. .+.+..++|+.+..+....+. ...+|+|+|+- +. .-+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 35799999999999999988864 356788899987765544332 36789999972 22 2346778
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888773
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.49 Score=43.42 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=44.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccc-ccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~-~Gidi~~v 156 (492)
..++||.+||++.+.++++.+.. .+.+..++|+..... ..+.+..+..+|+|+|+ .+. ..+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 46899999999999999998874 245667787754433 23445556678999995 222 33667778
Q ss_pred CEEEe
Q 011149 157 DLIIH 161 (492)
Q Consensus 157 ~~VI~ 161 (492)
++||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88774
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=91.84 E-value=0.87 Score=41.06 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=51.0
Q ss_pred ccHHHH-HHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEE
Q 011149 72 TSKRTI-LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (492)
Q Consensus 72 ~~k~~~-l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLV 142 (492)
.-|..+ +..++..+ ....++||.+||+..+.++++.+.. .+.+..++|+.+..++...+ . ..+|+|
T Consensus 62 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~iiv 136 (224)
T 1qde_A 62 TGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVV 136 (224)
T ss_dssp SSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEE
T ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEEE
Confidence 356544 33344433 2345899999999999999988764 35678889987665544333 2 267999
Q ss_pred eccc------ccccCCCCCcCEEEe
Q 011149 143 ATDV------AARGLDIPNVDLIIH 161 (492)
Q Consensus 143 aT~~------~~~Gidi~~v~~VI~ 161 (492)
+|+- ....+++..+++||.
T Consensus 137 ~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 137 GTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ECHHHHHHHHHhCCcchhhCcEEEE
Confidence 9972 233566777888773
|
| >1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A | Back alignment and structure |
|---|
Probab=91.67 E-value=0.068 Score=31.98 Aligned_cols=19 Identities=5% Similarity=0.027 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRG 434 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~ 434 (492)
-.|++||..||.+++|+.+
T Consensus 7 ~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSS
T ss_pred CEEEECCccccCHhHCccc
Confidence 4599999999999999865
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=91.44 E-value=0.37 Score=54.69 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=57.9
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-----cc----ceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-ccccCC-C
Q 011149 85 YAKGGKTIVFTQTKRDADEVSLALTS-----II----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLD-I 153 (492)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~----~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~~Gid-i 153 (492)
.....++||.+||++.|.++++.+.. .+ .+..+||+++..++.+.++.+++ .+|+|+|+- +..-+. +
T Consensus 96 ~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L 173 (1054)
T 1gku_B 96 ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYREL 173 (1054)
T ss_dssp HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTS
T ss_pred hhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHh
Confidence 34567899999999999999998874 24 68899999999998888888887 889999972 111111 5
Q ss_pred CCcCEEEe
Q 011149 154 PNVDLIIH 161 (492)
Q Consensus 154 ~~v~~VI~ 161 (492)
..+++||.
T Consensus 174 ~~l~~lVi 181 (1054)
T 1gku_B 174 GHFDFIFV 181 (1054)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 57888773
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.23 E-value=0.87 Score=42.57 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=52.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc-----ccc--ccCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA--RGLDIP 154 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~--~Gidi~ 154 (492)
...++||.+||++.++++++.+.+ .+.+..++|+.........+.. ..+|+|+|+ .+. ..+++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN----GINIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC----CCCEEEEcHHHHHHHHHccCCcccc
Confidence 356899999999999999998875 2456778888877665544433 378999995 222 246778
Q ss_pred CcCEEEe
Q 011149 155 NVDLIIH 161 (492)
Q Consensus 155 ~v~~VI~ 161 (492)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888774
|
| >2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.87 E-value=0.16 Score=35.33 Aligned_cols=18 Identities=6% Similarity=-0.136 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSR 433 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~ 433 (492)
..|++||+.||+.++|+.
T Consensus 8 ~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp CCCTTTCCTTSCGGGCSG
T ss_pred CccccCCCcCcccccCCC
Confidence 569999999999999983
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.28 E-value=0.062 Score=46.94 Aligned_cols=79 Identities=10% Similarity=0.134 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCCcCc----cccEEEeecCccc
Q 011149 259 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQ 334 (492)
Q Consensus 259 ~l~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~ 334 (492)
.+.....|.. +++..+...+..++.+...++++++. ...|++..++..+|+.+.|..... +||+......+..
T Consensus 54 ~~~~~~~~g~-~~~~~r~~~~~~f~~g~~~vLvaT~~--~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~ 130 (170)
T 2yjt_D 54 GINNCYLEGE-MVQGKRNEAIKRLTEGRVNVLVATDV--AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTA 130 (170)
Confidence 3333333432 34444445566777888889999987 688999999999999887755443 7887776544433
Q ss_pred eeEeec
Q 011149 335 GAVFDL 340 (492)
Q Consensus 335 gs~fdv 340 (492)
.++++.
T Consensus 131 ~~~~~~ 136 (170)
T 2yjt_D 131 ISLVEA 136 (170)
Confidence 344443
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.32 E-value=0.59 Score=42.98 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=54.2
Q ss_pred ccHHHH-HHHHHHHHc----cCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEE
Q 011149 72 TSKRTI-LSDLITVYA----KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (492)
Q Consensus 72 ~~k~~~-l~~ll~~~~----~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iL 141 (492)
.-|..+ +..++..+. ...++||.+||++.+.++++.+.+ .+.+..++++.. .............+|+
T Consensus 77 sGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~I~ 153 (245)
T 3dkp_A 77 SGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAV---AAKKFGPKSSKKFDIL 153 (245)
T ss_dssp SCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHH---HHTTTSTTSCCCCCEE
T ss_pred CcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCcc---HHHHhhhhhcCCCCEE
Confidence 345433 333444442 234799999999999999998875 245666665422 1112223345577899
Q ss_pred Eeccc-----ccc---cCCCCCcCEEEe
Q 011149 142 VATDV-----AAR---GLDIPNVDLIIH 161 (492)
Q Consensus 142 VaT~~-----~~~---Gidi~~v~~VI~ 161 (492)
|+|+- +.. .+++.++.+||.
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 154 VTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp EECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred EECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 99962 212 477888888874
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.94 E-value=0.49 Score=45.38 Aligned_cols=132 Identities=10% Similarity=0.071 Sum_probs=74.1
Q ss_pred ccHHHH-HHHHHHHHcc---CCeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEE
Q 011149 72 TSKRTI-LSDLITVYAK---GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (492)
Q Consensus 72 ~~k~~~-l~~ll~~~~~---~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iL 141 (492)
.-|..+ +..++..+.. ..++||.+||++.|.+++..+.. .+.+..++++...... .....+||
T Consensus 142 sGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Il 214 (300)
T 3fmo_B 142 TGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIV 214 (300)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEE
T ss_pred CCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEE
Confidence 345433 3344444322 23799999999999999887764 2456666766543211 12356799
Q ss_pred Eecccc------c-ccCCCCCcCEEEecCCC-----CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCC
Q 011149 142 VATDVA------A-RGLDIPNVDLIIHYELP-----NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (492)
Q Consensus 142 VaT~~~------~-~Gidi~~v~~VI~~~~P-----~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (492)
|+|+-. . ..+++..+.+||.=..- ......+.++-+ .-.....+++++.+-...+..+.+.+..+
T Consensus 215 V~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~---~~~~~~q~i~~SAT~~~~v~~~a~~~l~~ 291 (300)
T 3fmo_B 215 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQR---MLPRNCQMLLFSATFEDSVWKFAQKVVPD 291 (300)
T ss_dssp EECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHT---TSCTTCEEEEEESCCCHHHHHHHHHHSSS
T ss_pred EECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHH---hCCCCCEEEEEeccCCHHHHHHHHHHCCC
Confidence 999732 1 35778889988842210 112222223322 22334567777766555566666555544
Q ss_pred ceec
Q 011149 210 FEFV 213 (492)
Q Consensus 210 ~~~~ 213 (492)
+..+
T Consensus 292 p~~i 295 (300)
T 3fmo_B 292 PNVI 295 (300)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 4433
|
| >2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.58 E-value=0.11 Score=29.68 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=15.0
Q ss_pred cccCCCCCcccCCCCC
Q 011149 477 CFNCGKSGHRASECPN 492 (492)
Q Consensus 477 c~~cg~~gh~a~~cp~ 492 (492)
|-.|..-|||+.||+.
T Consensus 6 Ce~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 6 CEICEMFGHWATNCND 21 (26)
T ss_dssp ETTTTEESSCGGGCCT
T ss_pred chHHHHhCcccccCCc
Confidence 9999999999999974
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=87.02 E-value=0.58 Score=42.24 Aligned_cols=70 Identities=13% Similarity=0.248 Sum_probs=47.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc---------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----cc-ccCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLD 152 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~---------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~-~Gid 152 (492)
..++||.+||++.+.++++.+.+ .+.+..++|+.+..+. .+.+. ...+|+|+|+- +. ..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKLN-VQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCCS-SCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHcC-CCCCEEEeCHHHHHHHHHcCCCC
Confidence 45899999999999999887764 2456778888654332 22232 35679999962 22 2355
Q ss_pred CCCcCEEEe
Q 011149 153 IPNVDLIIH 161 (492)
Q Consensus 153 i~~v~~VI~ 161 (492)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 667777663
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=86.56 E-value=1.2 Score=48.91 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=47.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-----ccc-cC-CCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GL-DIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~-Gi-di~~ 155 (492)
..++||.|||+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +.. -+ .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHH----TCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhC----CCCEEEEchHHHHHHHHhcccccccc
Confidence 67899999999999998888764 4788999999876654443332 5679999962 122 23 5667
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788873
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=86.51 E-value=2.2 Score=42.81 Aligned_cols=70 Identities=26% Similarity=0.388 Sum_probs=53.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc--c---ceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------cccCCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI--I---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~--~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidi~~ 155 (492)
...++||.||++..+.+.++.+.+. + .+..+||+....++..... ..+|+|+|.-. ..-+....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5679999999999999999998863 3 7889999998887665543 35799999621 12456778
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888873
|
| >1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A | Back alignment and structure |
|---|
Probab=85.81 E-value=0.63 Score=32.92 Aligned_cols=20 Identities=0% Similarity=-0.250 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRGG 435 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~ 435 (492)
..|++||+.||++++|+...
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 31 GLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CSCSSCSSCSSCSTTCCCTT
T ss_pred cceeECCCCCCccCcCCCcc
Confidence 67999999999999998763
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=84.76 E-value=2.8 Score=39.96 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=51.4
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc------cccCCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidi~~ 155 (492)
...++||.+|++..++++++.+.+ .+.+..+|++.+..++...+. ..+|+|+|+-. ..-+++..
T Consensus 55 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 129 (337)
T 2z0m_A 55 LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-----NADIVVATPGRLLDLWSKGVIDLSS 129 (337)
T ss_dssp HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-----TCSEEEECHHHHHHHHHTTSCCGGG
T ss_pred hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-----CCCEEEECHHHHHHHHHcCCcchhh
Confidence 367999999999999999998874 257888999988776554433 26799999621 22346677
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 130 ~~~iVi 135 (337)
T 2z0m_A 130 FEIVII 135 (337)
T ss_dssp CSEEEE
T ss_pred CcEEEE
Confidence 787773
|
| >2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C | Back alignment and structure |
|---|
Probab=80.49 E-value=0.33 Score=47.95 Aligned_cols=10 Identities=10% Similarity=0.032 Sum_probs=5.0
Q ss_pred CHHHHHHHHH
Q 011149 256 GTDALAAALA 265 (492)
Q Consensus 256 ~~~~l~~al~ 265 (492)
.+..||+|.+
T Consensus 192 ~Ps~IAaAAI 201 (358)
T 2pk2_A 192 TPPVVACVCI 201 (358)
T ss_dssp CHHHHTTTTT
T ss_pred CHHHHHHHHH
Confidence 4555555433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 492 | ||||
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 8e-34 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 6e-29 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 8e-26 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 1e-24 | |
| d2j0sa2 | 168 | c.37.1.19 (A:244-411) Probable ATP-dependent RNA h | 3e-24 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 3e-24 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 2e-22 | |
| d2rb4a1 | 168 | c.37.1.19 (A:307-474) ATP-dependent RNA helicase D | 2e-19 | |
| d1jr6a_ | 138 | c.37.1.14 (A:) HCV helicase domain {Human hepatiti | 1e-18 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 2e-18 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 2e-16 | |
| d1s2ma2 | 171 | c.37.1.19 (A:252-422) Putative ATP-dependent RNA h | 3e-16 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 5e-16 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 1e-15 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 1e-15 | |
| d1c4oa2 | 174 | c.37.1.19 (A:410-583) Nucleotide excision repair e | 2e-15 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 8e-15 | |
| d1oywa3 | 200 | c.37.1.19 (A:207-406) RecQ helicase domain {Escher | 1e-14 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 1e-14 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 2e-14 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 2e-14 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 2e-14 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 3e-14 | |
| d1t5ia_ | 168 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 6e-14 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 3e-12 | |
| d2eyqa5 | 211 | c.37.1.19 (A:779-989) Transcription-repair couplin | 3e-12 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 7e-08 | |
| d1gm5a4 | 206 | c.37.1.19 (A:550-755) RecG helicase domain {Thermo | 8e-08 | |
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 5e-06 | |
| d2exfa1 | 42 | g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunod | 1e-05 | |
| d2exfa1 | 42 | g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunod | 0.002 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 8e-05 | |
| d2e29a1 | 85 | d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 | 3e-04 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 0.001 |
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 127 bits (320), Expect = 8e-34
Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 21/180 (11%)
Query: 62 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 120
I+ A+STT + KGG+ ++F +K+ DE++ L ++ I + A +
Sbjct: 11 IEEVALSTTG-EIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRG 69
Query: 121 ISQHQR----------ERTLNGFRQGKFTVLVATDVAARG---LDIPNVDLIIHYELPND 167
+ L G F ++ + + I LP D
Sbjct: 70 LDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQD 129
Query: 168 PETFVHRSGRTGRAGKEGTAILMFTSSQRR-TVRSLE----RDVGCKFEFVSPPVVEDVL 222
+ R GRTGR GK G + + S D GC + ++P L
Sbjct: 130 AVSRTQRRGRTGR-GKPGIYRFVAPGERPSGMFDSSVLCECYDAGCAWYELTPAETTVRL 188
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 112 bits (280), Expect = 6e-29
Identities = 33/203 (16%), Positives = 64/203 (31%), Gaps = 21/203 (10%)
Query: 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGF 133
+ LS ++ G I++ +T +A+E+ +L I ++ F
Sbjct: 13 SISTLSSILE--KLGTGGIIYARTGEEAEEIYESL-----KNKFRIGIVTATKKGDYEKF 65
Query: 134 RQGKFTVLVAT----DVAARGLDIP-NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAI 188
+G+ L+ T RGLD+P + + P+ F + +
Sbjct: 66 VEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKL 121
Query: 189 LMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTA 248
L + + L V + V ++L+ + V E P
Sbjct: 122 LAYLYRNVDEIERLLPAVERHID-----EVREILKKVMGKERPQAKDVVVREGEVIFPDL 176
Query: 249 QRLIEEKGTDALAAALAQLSGFS 271
+ I+ G + A G S
Sbjct: 177 RTYIQGSGRTSRLFAGGLTKGAS 199
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 101 bits (251), Expect = 8e-26
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 132
K L+DL + ++F T+R +E++ L + A++ D+ Q +R+ +
Sbjct: 14 KYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKE 72
Query: 133 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 192
FR G +L++TD+ ARG+D+ V L+I+Y+LP + E ++HR GR GR G++G AI T
Sbjct: 73 FRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 132
Query: 193 SSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222
+ +R LE+ + E + P + +L
Sbjct: 133 NEDVGAMRELEKFYSTQIEEL-PSDIATLL 161
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (251), Expect = 1e-24
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADE-VSLALTSIIASEALHGDISQHQR-- 126
K L ++I + K IVFT + A + V+ + I ++ G S+
Sbjct: 143 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRG 202
Query: 127 ------ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
+ L+ F +G+F VLVAT V GLD+P VDL++ YE + R GRTGR
Sbjct: 203 LSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR 262
Query: 181 AGKEGTAILMFTSSQR 196
G I++ R
Sbjct: 263 HMP-GRVIILMAKGTR 277
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.9 bits (240), Expect = 3e-24
Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 4/170 (2%)
Query: 55 DEKLAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA 113
DE EGIK + ++ K L DL + ++F TKR D ++ +
Sbjct: 1 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANF 59
Query: 114 SEA-LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
+ + +HGD+ Q +RE + FR G VL++TDV ARGLD+P V LII+Y+LPN+ E ++
Sbjct: 60 TVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYI 119
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222
HR GR+GR G++G AI + R +R +E+ + + + P V D++
Sbjct: 120 HRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM-PMNVADLI 168
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 96.6 bits (239), Expect = 3e-24
Identities = 51/151 (33%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 62 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDI 121
I+ + + L L+ K +VF +TKRD E++ L I
Sbjct: 4 IEQSYVEVNENERFEALCRLLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGD 61
Query: 122 S-QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
Q QRE+ + F+Q K +L+ATDV +RG+D+ +++ +I+Y LP +PE+++HR GRTGR
Sbjct: 62 LSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGR 121
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211
AGK+G AI + + + +R +ER + K +
Sbjct: 122 AGKKGKAISIINRREYKKLRYIERAMKLKIK 152
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 93.0 bits (230), Expect = 2e-22
Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Query: 56 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE 115
E L + I+ + +K L +++ + + K I+FT+ +S +
Sbjct: 62 EALRAWEEARRIAFNSKNKIRKLREILERH-RKDKIIIFTRHNELVYRIS----KVFLIP 116
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
A+ S+ +RE L GFR G+F +V++ V G+D+P+ ++ + ++ R
Sbjct: 117 AITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRL 176
Query: 176 GRTGRAGKEGTAILMFT 192
GR R K +++
Sbjct: 177 GRILRPSKGKKEAVLYE 193
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 80.1 bits (197), Expect = 1e-18
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 12/138 (8%)
Query: 62 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDI 121
I+ A+STT + + V KGG+ ++F +K+ DE++ L AL +
Sbjct: 10 IEEVALSTTGEIPFYGKAIPLEVI-KGGRHLIFCHSKKKCDELAAKL------VALGINA 62
Query: 122 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN---VDLIIHYELPNDPETFVHRSGRT 178
+ R ++ V+VATD G +D P D + R GRT
Sbjct: 63 VAYYRGLDVSVIPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRT 122
Query: 179 GRAGKEGTAILMFTSSQR 196
GR GK G +R
Sbjct: 123 GR-GKPGI-YRFVAPGER 138
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 83.8 bits (206), Expect = 2e-18
Identities = 23/213 (10%), Positives = 50/213 (23%), Gaps = 45/213 (21%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
+ + + +AT P + + +
Sbjct: 112 TDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSG- 170
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
V GKT+ F + + ++++ L L
Sbjct: 171 --------------------HEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSR 210
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDI-------------------PNVDLII 160
+ + R + +V TD++ G + +I+
Sbjct: 211 KTFDSEYIK----TRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVIL 266
Query: 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193
+P + R GR GR K ++
Sbjct: 267 AGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMG 299
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 75.2 bits (184), Expect = 2e-16
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQ 135
++ ++ + +T+V T TK+ A++++ L I LH +I +R + R
Sbjct: 20 LIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRL 79
Query: 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS--GRTGRAGKEGTAILMF 191
GK+ VLV ++ GLDIP V L+ + + RS GRA + ++
Sbjct: 80 GKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIM 137
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.3 bits (181), Expect = 3e-16
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEAL 117
+GI Y K L+ L + + + I+F + + ++ +
Sbjct: 4 LKGITQYYAFVEERQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYS 62
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
H + Q +R + + FRQGK LV +D+ RG+DI V+++I+++ P ET++HR GR
Sbjct: 63 HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGR 122
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227
+GR G G AI + + R + +E+++G + + P ++ L AE
Sbjct: 123 SGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAI-PATIDKSLY-VAE 170
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 74.2 bits (181), Expect = 5e-16
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 46/188 (24%)
Query: 58 LAEGIKL-----YAISTTATSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTSI 111
L EG+ +TS+R +L+ A+ G +VF T+R A++ ++ L++I
Sbjct: 4 LVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAI 63
Query: 112 IASEA-------------------------------LHGDISQHQRERTLNGFRQGKFTV 140
A H + QR + FR+G V
Sbjct: 64 TAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKV 123
Query: 141 LVATDVAARGLDIPNVDLIIH-------YELPNDPETFVHRSGRTGRAGK--EGTAILMF 191
+VAT A G+++P +I+ Y + +GR GR G G AI++
Sbjct: 124 VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 183
Query: 192 TSSQRRTV 199
R
Sbjct: 184 GKRDREIA 191
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.7 bits (180), Expect = 1e-15
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50
GF+E + + LPP Q +L SAT+P + +++ K++ +P+ I +
Sbjct: 175 GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV 220
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.3 bits (179), Expect = 1e-15
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNI 48
GF+E + I LPP Q +L SATMP+ V +++ K++ NP+ I
Sbjct: 167 GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 210
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Score = 72.0 bits (176), Expect = 2e-15
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
Query: 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQ 135
++ + A+G +T+V T R A+E++ L I + LH ++ +R+ + R
Sbjct: 20 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL 79
Query: 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS--GRTGRAGKEGTAILMF-- 191
G + LV ++ GLDIP V L+ + + RS GRA + +
Sbjct: 80 GHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYA 139
Query: 192 ---TSSQRRTVRSLER 204
+ + +R + R
Sbjct: 140 DRVSEAMQRAIEETNR 155
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.4 bits (174), Expect = 8e-15
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50
GF++ + I + L Q +L SATMPS V ++++K++ +P+ I +
Sbjct: 171 GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILV 216
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 70.8 bits (172), Expect = 1e-14
Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLN 131
L + +G I++ ++ ++ + L S I++ A H + + R
Sbjct: 16 KPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQE 74
Query: 132 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 191
F++ ++VAT G++ PNV ++H+++P + E++ +GR GR G A+L +
Sbjct: 75 KFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 134
Query: 192 TSSQRRTVR 200
+ +R
Sbjct: 135 DPADMAWLR 143
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 70.5 bits (171), Expect = 1e-14
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLV 51
F DV+ I +P Q ++FSAT+P +K +KY++NP + ++
Sbjct: 164 FITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 209
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.0 bits (170), Expect = 2e-14
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNID 49
F + +E I+ LP RQ +L+SAT P V+K +L+ P I+
Sbjct: 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.9 bits (170), Expect = 2e-14
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNI 48
DV+ I P ++Q M+FSAT+ ++ + RK++ +P+ I
Sbjct: 162 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 205
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.6 bits (169), Expect = 2e-14
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50
F+ +E IL LPP QS+LFSAT P VK+ K+L P I+L
Sbjct: 160 FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINL 204
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 69.3 bits (169), Expect = 3e-14
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50
ML +GF +DVE IL ++ +LFSATMP + L++KY+ + I
Sbjct: 157 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.4 bits (163), Expect = 6e-14
Identities = 37/166 (22%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHG 119
G++ Y + K L DL+ V + + ++F ++ + ++ L + + A+H
Sbjct: 1 GLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 59
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ Q +R F+ + +LVAT++ RG+DI V++ +Y++P D +T++HR R G
Sbjct: 60 GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAG 119
Query: 180 RAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPV-VEDVLE 223
R G +G AI + + + ++ + + + +E
Sbjct: 120 RFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 165
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 64.2 bits (155), Expect = 3e-12
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 6 FEEDVELILENL----PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG 52
FE + I+E RQ+++FSAT P ++KL+ +L N + + VG
Sbjct: 189 FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMT-VG 238
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Length = 211 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Score = 63.5 bits (154), Expect = 3e-12
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV-H 173
HG + + + ER +N F +F VLV T + G+DIP + II + +
Sbjct: 61 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 120
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLER--------DVGCKFEFVSPPVVEDVLESS 225
GR GR+ + A L+ + T + +R D+G F + D+
Sbjct: 121 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT----HDLEIRG 176
Query: 226 AEQVVATLNGVHPESVEFFTPTAQRLIEE 254
A +++ E++ F L+E
Sbjct: 177 AGELLGEEQSGSMETIGF--SLYMELLEN 203
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 51.1 bits (121), Expect = 7e-08
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNID 49
+ +GF D++ + M+ +AT K + L LN D
Sbjct: 185 LHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQL---LNFD 230
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Score = 50.6 bits (120), Expect = 8e-08
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET-FVHRS 175
+HG +SQ +++R + F +G++ +LV+T V G+D+P ++++
Sbjct: 70 MHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLR 129
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212
GR GR G+E L+ + L F
Sbjct: 130 GRVGRGGQEAYCFLVVGDVGEEAMERLRFFTLNTDGF 166
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 46.1 bits (109), Expect = 5e-06
Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 23/125 (18%)
Query: 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146
T F + R A+ ++ +L + L+ + + +Q K ++ATD+
Sbjct: 36 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPT----IKQKKPDFILATDI 91
Query: 147 AARGLDIPNV------------------DLIIHYELPNDPETFVHRSGRTGRAGKEGTAI 188
A G ++ + I L + R GR GR
Sbjct: 92 AEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDS 151
Query: 189 LMFTS 193
++
Sbjct: 152 YYYSE 156
|
| >d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Retrovirus zinc finger-like domains superfamily: Retrovirus zinc finger-like domains family: Retrovirus zinc finger-like domains domain: HIV nucleocapsid species: Human immunodeficiency virus type 1, different isolates [TaxId: 11676]
Score = 40.2 bits (94), Expect = 1e-05
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 477 CFNCGKSGHRASECPN 492
CFNCGK GH A C
Sbjct: 4 CFNCGKEGHTARNCRA 19
|
| >d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Retrovirus zinc finger-like domains superfamily: Retrovirus zinc finger-like domains family: Retrovirus zinc finger-like domains domain: HIV nucleocapsid species: Human immunodeficiency virus type 1, different isolates [TaxId: 11676]
Score = 34.1 bits (78), Expect = 0.002
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 474 GGACFNCGKSGHRASECPN 492
C+ CGK GH+ +C
Sbjct: 22 KKGCWKCGKEGHQMKDCTE 40
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 41.5 bits (96), Expect = 8e-05
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 13 ILENLPPKRQSMLFSATMPSWVKK--LSRKYLDNPL 46
L P M +AT ++ + L++PL
Sbjct: 167 QLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPL 202
|
| >d2e29a1 d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: GUCT domain domain: ATP-dependent RNA helicase DDX50 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (88), Expect = 3e-04
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 276 SRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE-IGKIHIIADDRVQ 334
RSLI ++G+VT+ L L+ + A I ++ ++ +
Sbjct: 3 PRSLITSDKGFVTMTLE----SLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGN--M 56
Query: 335 GAVFDLPEEIAKELLNK 351
G FD+P ++ L +
Sbjct: 57 GVCFDVPTTESERLQAE 73
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 37.8 bits (86), Expect = 0.001
Identities = 5/64 (7%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLA 59
+ + + + +A+ S +K+ + + +I+ +
Sbjct: 137 AVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVR 196
Query: 60 EGIK 63
+K
Sbjct: 197 PYVK 200
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 492 | |||
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.98 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.98 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.97 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.97 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.97 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.96 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.96 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.93 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.93 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.89 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.82 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.82 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.8 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.79 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.76 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.75 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.72 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.57 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.45 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.42 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.37 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 99.22 | |
| d2exfa1 | 42 | HIV nucleocapsid {Human immunodeficiency virus typ | 98.98 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 98.54 | |
| d2e29a1 | 85 | ATP-dependent RNA helicase DDX50 {Human (Homo sapi | 98.41 | |
| d1nc8a_ | 29 | HIV nucleocapsid {Human immunodeficiency virus typ | 98.2 | |
| d2exfa1 | 42 | HIV nucleocapsid {Human immunodeficiency virus typ | 97.74 | |
| d1dsqa_ | 26 | Nucleic acid binding protein p14 {Mouse mammary tu | 97.7 | |
| d1a6bb_ | 40 | Zinc finger protein ncp10 {Moloney murine leukemia | 97.6 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 97.38 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 96.89 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 96.11 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 95.5 | |
| d1dsva_ | 31 | Nucleic acid binding protein p14 {Mouse mammary tu | 95.27 | |
| d1cl4a_ | 32 | Nucleocapsid protein from mason-pfizer monkey viru | 95.22 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 95.2 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 93.91 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 92.79 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 92.59 | |
| d1nc8a_ | 29 | HIV nucleocapsid {Human immunodeficiency virus typ | 92.11 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 92.01 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 91.93 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 89.97 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 84.52 |
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=4.2e-32 Score=242.14 Aligned_cols=159 Identities=35% Similarity=0.583 Sum_probs=147.5
Q ss_pred ccccceEEEEEEcCcc-cHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhc
Q 011149 57 KLAEGIKLYAISTTAT-SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 134 (492)
Q Consensus 57 ~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~ 134 (492)
.+.++|+|+|+.++.. .|+..|..+++.+ ...++||||++++.|+.++..|.. .+.+..+||++++.+|.++++.|+
T Consensus 3 ~tl~~i~q~~v~v~~~~~K~~~L~~ll~~~-~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk 81 (168)
T d2j0sa2 3 LTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 81 (168)
T ss_dssp CSCTTEEEEEEEESSTTHHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEecChHHHHHHHHHHHHhC-CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHh
Confidence 4568899999988765 5999999999876 457999999999999999999985 789999999999999999999999
Q ss_pred CCCeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecC
Q 011149 135 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (492)
Q Consensus 135 ~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (492)
+|+.+||||||+++||||+|+|++|||||+|++++.|+||+||+||.|++|.+++|+.+.|...++.|++.++.++++++
T Consensus 82 ~g~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~i~e~p 161 (168)
T d2j0sa2 82 SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 161 (168)
T ss_dssp HTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECC
T ss_pred cCCccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHcCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888765
Q ss_pred CC
Q 011149 215 PP 216 (492)
Q Consensus 215 ~p 216 (492)
..
T Consensus 162 ~~ 163 (168)
T d2j0sa2 162 MN 163 (168)
T ss_dssp SC
T ss_pred cC
Confidence 43
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.2e-31 Score=240.36 Aligned_cols=158 Identities=27% Similarity=0.496 Sum_probs=149.2
Q ss_pred cccceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCC
Q 011149 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG 136 (492)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g 136 (492)
+..+|+|+|+.++..+|...|.++|+.. +..++||||+|++.++.++..|.. ++.+..+||+|++++|.++++.|+++
T Consensus 3 tl~~i~q~yi~v~~~~K~~~L~~ll~~~-~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~ 81 (171)
T d1s2ma2 3 TLKGITQYYAFVEERQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG 81 (171)
T ss_dssp BCTTEEEEEEECCGGGHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CccceEEEEEEcCHHHHHHHHHHHHHhC-CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccC
Confidence 4678999999999999999999999875 568999999999999999999996 89999999999999999999999999
Q ss_pred CeEEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011149 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (492)
Q Consensus 137 ~~~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (492)
..+|||||+++++|||+|++++|||||+|++++.|+||+||+||.|+.|.+++|+++.|...++.|++.++.+++.++..
T Consensus 82 ~~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~l~~~~~~~p~~ 161 (171)
T d1s2ma2 82 KVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 161 (171)
T ss_dssp SSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred ccccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHHHHHHCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888776543
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.7e-32 Score=241.16 Aligned_cols=153 Identities=31% Similarity=0.570 Sum_probs=137.5
Q ss_pred eEEEEEEcCc-ccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeE
Q 011149 62 IKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 139 (492)
Q Consensus 62 i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~ 139 (492)
|+|+|+.+.. +.|+++|..+++.+ +..++||||+|+..++.+++.|.. .+.+..+||+|++++|..+++.|+.++.+
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~~~-~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~ 79 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 79 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHhC-CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccc
Confidence 4678887754 56999999999876 568999999999999999999985 78999999999999999999999999999
Q ss_pred EEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011149 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (492)
Q Consensus 140 iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~ 215 (492)
||||||+++||||+|+|++|||||+|++++.|+||+||+||.|++|.+++|+++.|...++.|++.++.+++.++.
T Consensus 80 iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~ip~ 155 (162)
T d1fuka_ 80 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 155 (162)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCS
T ss_pred eeeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHHHHHcCcCCCCCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887654
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=3e-31 Score=233.91 Aligned_cols=152 Identities=36% Similarity=0.616 Sum_probs=143.2
Q ss_pred cceEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCe
Q 011149 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (492)
Q Consensus 60 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~ 138 (492)
.+|+|+|+.++..+|++.|.++|+. .+.++||||+|++.|+.++..|.. ++.+..+|+++++.+|..++++|++++.
T Consensus 2 ~nI~~~~i~v~~~~K~~~L~~ll~~--~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~ 79 (155)
T d1hv8a2 2 ANIEQSYVEVNENERFEALCRLLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKI 79 (155)
T ss_dssp SSSEEEEEECCGGGHHHHHHHHHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSS
T ss_pred CCeEEEEEEeChHHHHHHHHHHHcc--CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccc
Confidence 5789999999999999999998864 456899999999999999999986 7899999999999999999999999999
Q ss_pred EEEEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceec
Q 011149 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (492)
Q Consensus 139 ~iLVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (492)
+|||||+++++|||+|++++||+||+|+++..|+||+||+||.|++|.+++|+.+.|...++.|++.++.+++++
T Consensus 80 ~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~i~~l 154 (155)
T d1hv8a2 80 RILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 154 (155)
T ss_dssp SEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred eeeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHHHHHHCCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887654
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.1e-29 Score=226.53 Aligned_cols=151 Identities=23% Similarity=0.454 Sum_probs=141.1
Q ss_pred eEEEEEEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEE
Q 011149 62 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (492)
Q Consensus 62 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~i 140 (492)
++|+|+.+..++|...|.++++.+ ...++||||++++.++.|++.|.. .+.+..+||+|++++|.+++++|++|+++|
T Consensus 2 l~q~~v~~~~~~K~~~L~~ll~~~-~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~i 80 (168)
T d1t5ia_ 2 LQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRI 80 (168)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred cEEEEEEeChHHHHHHHHHHHHhC-CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhcccccee
Confidence 679999999999999999999886 457999999999999999999985 789999999999999999999999999999
Q ss_pred EEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChh-hHHHHHHHHHHhCCCceec
Q 011149 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFV 213 (492)
Q Consensus 141 LVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~~ 213 (492)
||||+++++|+|+|.+++||+||+|++++.|+||+||+||.|++|.+++|+++. +...++.+++.+...++++
T Consensus 81 Lv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~el 154 (168)
T d1t5ia_ 81 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 154 (168)
T ss_dssp EEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEEC
T ss_pred eeccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchHHHHHHHHHHHHHcCCcccC
Confidence 999999999999999999999999999999999999999999999999999875 5678888999998887764
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.4e-28 Score=225.14 Aligned_cols=136 Identities=21% Similarity=0.431 Sum_probs=124.7
Q ss_pred EEcCcccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 67 ISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 67 ~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
..++..+|++.|..+|+.. ...++||||+|++.++.|+..|.. .+.+..+||+|++++|.++++.|++|+++|||||+
T Consensus 10 ~v~~~~~k~~~L~~~l~~~-~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd 88 (200)
T d1oywa3 10 MLMEKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 88 (200)
T ss_dssp EEEECSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred EEEcCCcHHHHHHHHHHhc-CCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEEEecc
Confidence 3344567888888888765 457999999999999999999985 78999999999999999999999999999999999
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHH
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (492)
++++|||+|+|++||||++|.++++|+||+|||||.|++|.+++|+.+.|...++++.
T Consensus 89 ~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~i 146 (200)
T d1oywa3 89 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 146 (200)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred hhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999988777654
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=5.8e-26 Score=200.60 Aligned_cols=129 Identities=23% Similarity=0.401 Sum_probs=111.5
Q ss_pred cHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccC
Q 011149 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (492)
Q Consensus 73 ~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gi 151 (492)
...+++..+.+...++.++||||+|++.|+.|+..|.. ++.+..+||+|++.+|++++++|++|+++|||||+++++||
T Consensus 16 qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~Gi 95 (174)
T d1c4oa2 16 QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGL 95 (174)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTC
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeeec
Confidence 34556666666666788999999999999999999996 89999999999999999999999999999999999999999
Q ss_pred CCCCcCEEEecCCCC-----ChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHH
Q 011149 152 DIPNVDLIIHYELPN-----DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 152 di~~v~~VI~~~~P~-----~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (492)
|+|+|++||+|++|. +.++|+||+||+||.++ |.+++++........+.+
T Consensus 96 Dip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~-g~~~~~~~~~~~~~~~~i 150 (174)
T d1c4oa2 96 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR-GEVWLYADRVSEAMQRAI 150 (174)
T ss_dssp CCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCCHHHHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHhhhhhhcCC-CeeEEeecCCCHHHHHHH
Confidence 999999999999765 56889999999999874 777777766554444333
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.93 E-value=8.9e-26 Score=202.42 Aligned_cols=119 Identities=25% Similarity=0.437 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCC
Q 011149 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (492)
Q Consensus 74 k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gid 152 (492)
..++|..+.+....+.++||||+++..++.++..|.+ ++.+..+||+|++.+|.+++++|++|+++|||||++++||||
T Consensus 17 vd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiD 96 (181)
T d1t5la2 17 IDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLD 96 (181)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSSCC
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHccCC
Confidence 3456666666656678999999999999999999986 899999999999999999999999999999999999999999
Q ss_pred CCCcCEEEecCCCC-----ChhHHHHHhhhcccCCCCCeEEEecCh
Q 011149 153 IPNVDLIIHYELPN-----DPETFVHRSGRTGRAGKEGTAILMFTS 193 (492)
Q Consensus 153 i~~v~~VI~~~~P~-----~~~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (492)
+|+|++|||||+|. +...|+||+||+||.|. +.+++++..
T Consensus 97 ip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~-~~~~~~~~~ 141 (181)
T d1t5la2 97 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN-GHVIMYADT 141 (181)
T ss_dssp CTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSS
T ss_pred CCCCCEEEEecCCcccccccHHHHHHHHHhhccccC-ceeEeecch
Confidence 99999999999996 68899999999999885 444444443
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.89 E-value=4.1e-24 Score=182.86 Aligned_cols=99 Identities=29% Similarity=0.469 Sum_probs=89.9
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecC--
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-- 163 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~-- 163 (492)
+.+++||||+|++.|+.|++.|.. ++.+..+|++|++ +.|++++.+||||||++++||| |+|++||||+
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~-------~~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~~ 105 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV-------SVIPTNGDVVVVATDALMTGFT-GDFDSVIDCNTS 105 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCS-------CCCTTSSCEEEEESSSSCSSSC-CCBSEEEECSEE
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchh-------hhhhhhhcceeehhHHHHhccc-cccceEEEEEec
Confidence 568999999999999999999985 8999999999984 5688999999999999999999 9999999855
Q ss_pred --CCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 164 --LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 164 --~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
+|.++++|+||+||||| |++|. ++|+++.|
T Consensus 106 ~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 106 DGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137 (138)
T ss_dssp TTEECCHHHHHHHHTTBCS-SSCEE-EEECCSSC
T ss_pred CCCCCCHHHHHhHhccccC-CCCcE-EEEEcCCC
Confidence 69999999999999999 99995 77887765
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.82 E-value=1.8e-20 Score=171.02 Aligned_cols=112 Identities=29% Similarity=0.544 Sum_probs=99.6
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHcc-------------------------------cceeeecCCCCHHHHHHHHhhhc
Q 011149 86 AKGGKTIVFTQTKRDADEVSLALTSI-------------------------------IASEALHGDISQHQRERTLNGFR 134 (492)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~~-------------------------------~~~~~lhg~~~~~~r~~~~~~F~ 134 (492)
.++.++||||+|++.|+.++..|... ..+.++|++|++++|..+++.|+
T Consensus 38 ~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~ 117 (201)
T d2p6ra4 38 AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFR 117 (201)
T ss_dssp HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHH
T ss_pred HcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHh
Confidence 35689999999999999988887631 12778999999999999999999
Q ss_pred CCCeEEEEecccccccCCCCCcCEEEe-------cCCCCChhHHHHHhhhcccCC--CCCeEEEecChhhHH
Q 011149 135 QGKFTVLVATDVAARGLDIPNVDLIIH-------YELPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRR 197 (492)
Q Consensus 135 ~g~~~iLVaT~~~~~Gidi~~v~~VI~-------~~~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~ 197 (492)
+|.++|||||+++++|||+|.+++||+ ++.|.++.+|+||+|||||.| ..|.+++++.+.+..
T Consensus 118 ~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~~ 189 (201)
T d2p6ra4 118 RGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 189 (201)
T ss_dssp TTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred CCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCChH
Confidence 999999999999999999999999996 678899999999999999988 478899998887653
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.82 E-value=1.2e-20 Score=182.25 Aligned_cols=121 Identities=34% Similarity=0.555 Sum_probs=103.2
Q ss_pred cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecC--------CCCHHHHHHHHhhhcCCCeEE
Q 011149 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG--------DISQHQRERTLNGFRQGKFTV 140 (492)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg--------~~~~~~r~~~~~~F~~g~~~i 140 (492)
.|.+.|.++|..+ .++.++||||++++.++.+++.|.+ .+++..+|| +|++.+|..+++.|++|+++|
T Consensus 143 pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~v 222 (286)
T d1wp9a2 143 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 222 (286)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSE
T ss_pred cHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCcE
Confidence 4666666666543 3467999999999999999999985 677777755 567778999999999999999
Q ss_pred EEecccccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChh
Q 011149 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (492)
Q Consensus 141 LVaT~~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 194 (492)
||||+++++|||+|++++||+||+|+++..|+||+||+||.+ +|.+++|+++.
T Consensus 223 Lv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~-~~~~~~l~~~~ 275 (286)
T d1wp9a2 223 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKG 275 (286)
T ss_dssp EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC-CSEEEEEEETT
T ss_pred EEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCC-CCEEEEEEeCC
Confidence 999999999999999999999999999999999999999974 78888888764
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=9.3e-21 Score=172.22 Aligned_cols=129 Identities=20% Similarity=0.402 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHccCCeEEEEeCChHHHHH--------HHHHHHc----ccceeeecCCCCHHHHHHHHhhhcCCCeEEE
Q 011149 74 KRTILSDLITVYAKGGKTIVFTQTKRDADE--------VSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (492)
Q Consensus 74 k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~--------l~~~l~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iL 141 (492)
...++..+.+.+..+.++.|.||..+..+. .++.|.+ .+.+..+||.|++++|++++++|++|+++||
T Consensus 15 ~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iL 94 (206)
T d1gm5a4 15 VNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDIL 94 (206)
T ss_dssp HHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEE
Confidence 344555555666677889899987655443 3333432 3568889999999999999999999999999
Q ss_pred EecccccccCCCCCcCEEEecCCCC-ChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHH
Q 011149 142 VATDVAARGLDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (492)
Q Consensus 142 VaT~~~~~Gidi~~v~~VI~~~~P~-~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (492)
|||+++++|||+|++++||+++.|. ..+.|.|..||+||.++++.|++++++......+++
T Consensus 95 VaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl 156 (206)
T d1gm5a4 95 VSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 156 (206)
T ss_dssp CCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred EEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccchhhh
Confidence 9999999999999999999999997 577777889999999999999999987655444444
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.79 E-value=3.4e-22 Score=189.23 Aligned_cols=122 Identities=18% Similarity=0.322 Sum_probs=103.7
Q ss_pred cccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEec----cc
Q 011149 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DV 146 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT----~~ 146 (492)
.++|.+.|..+|+.+ +.++||||+|++.|+.|++.|... +||+|++.+|.+++++|++|+++||||| ++
T Consensus 10 ~~~~~~~l~~~l~~~--~~~~iif~~~~~~~~~l~~~l~~~-----~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v 82 (248)
T d1gkub2 10 NDESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-----FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGT 82 (248)
T ss_dssp SCCCTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-----SCEEECTTSSSHHHHHHHHTSCSEEEEECC----
T ss_pred CchHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHh-----ccCCCCHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 346777788888654 468999999999999999999753 8999999999999999999999999999 88
Q ss_pred ccccCCCCC-cCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHH
Q 011149 147 AARGLDIPN-VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (492)
Q Consensus 147 ~~~Gidi~~-v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (492)
+++|||+|+ |++|||||+|+ |.||+||+||+|+.+.+++++...+...++.+.
T Consensus 83 ~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~~~~l~ 136 (248)
T d1gkub2 83 LVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLL 136 (248)
T ss_dssp --CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTC
T ss_pred hhhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHHHHHHH
Confidence 999999996 99999999994 899999999999999999998887766655543
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.76 E-value=1.1e-19 Score=170.93 Aligned_cols=107 Identities=24% Similarity=0.367 Sum_probs=94.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHH----------HHHHhhhcCCCeEEEEecccccc---cCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQR----------ERTLNGFRQGKFTVLVATDVAAR---GLD 152 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r----------~~~~~~F~~g~~~iLVaT~~~~~---Gid 152 (492)
+..++||||+|++.|++|+..|.+ ++.+..+|++|+++.| ..+++.|++|++++||+|+++++ ++|
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giD 114 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFS 114 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECC
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCC
Confidence 468999999999999999999985 7899999999999887 56889999999999999999999 677
Q ss_pred CCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChh
Q 011149 153 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (492)
Q Consensus 153 i~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 194 (492)
++.+.+||+|++|.|+++|+||+||||| |++|...+++...
T Consensus 115 id~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~~~t 155 (299)
T d1a1va2 115 LDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGE 155 (299)
T ss_dssp CSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESCSCC
T ss_pred CCcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEecCC
Confidence 8888899999999999999999999999 8999887766543
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.75 E-value=4.7e-19 Score=161.80 Aligned_cols=108 Identities=25% Similarity=0.449 Sum_probs=98.2
Q ss_pred ccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccC
Q 011149 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (492)
Q Consensus 72 ~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gi 151 (492)
..|.+.|.++++.+ ...++||||++...++.|++.| .+..+||++++.+|+.+++.|++++++|||||+++++||
T Consensus 78 ~~K~~~l~~ll~~~-~~~k~lvf~~~~~~~~~l~~~l----~~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~Gi 152 (200)
T d2fwra1 78 KNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVF----LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGI 152 (200)
T ss_dssp SHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHT----TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSS
T ss_pred HHHHHHHHHHHHhC-CCCcEEEEeCcHHHHHHHHhhc----CcceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhccc
Confidence 46788888888775 4679999999999999887766 566789999999999999999999999999999999999
Q ss_pred CCCCcCEEEecCCCCChhHHHHHhhhcccCCCC
Q 011149 152 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 184 (492)
Q Consensus 152 di~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~ 184 (492)
|+|.+++||++++|+++..|+||+||++|.+..
T Consensus 153 dl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~ 185 (200)
T d2fwra1 153 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKG 185 (200)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTT
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999998753
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=2.8e-17 Score=147.75 Aligned_cols=122 Identities=21% Similarity=0.365 Sum_probs=110.0
Q ss_pred cHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc---ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccc
Q 011149 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 149 (492)
Q Consensus 73 ~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~ 149 (492)
++..+...+...+..+.++.+.||..+..+.+++.+.+ .+.+..+||.|+++++++++.+|++|+++|||||++++.
T Consensus 16 ~~~~i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEv 95 (211)
T d2eyqa5 16 DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 95 (211)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGG
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhh
Confidence 44456666777788889999999999999999999886 467899999999999999999999999999999999999
Q ss_pred cCCCCCcCEEEecCCCC-ChhHHHHHhhhcccCCCCCeEEEecChh
Q 011149 150 GLDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFTSS 194 (492)
Q Consensus 150 Gidi~~v~~VI~~~~P~-~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 194 (492)
|||+|+++++|..+.+. -..++.|..||+||.+..+.|++++.+.
T Consensus 96 GiDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~ 141 (211)
T d2eyqa5 96 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 141 (211)
T ss_dssp GSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred ccCCCCCcEEEEecchhccccccccccceeeecCccceEEEEecCC
Confidence 99999999999888874 7889999999999999999999998653
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.57 E-value=2.6e-15 Score=145.14 Aligned_cols=102 Identities=19% Similarity=0.293 Sum_probs=86.4
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEE-----
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----- 160 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI----- 160 (492)
...++||||++++.++.+++.|.+ .+.+..+|+++++.. ...|+++..+++|||+++++|+|++ +++||
T Consensus 177 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~ 251 (305)
T d2bmfa2 177 FKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSE----YIKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRC 251 (305)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHH----GGGGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred hCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHH----HhhhhccchhhhhhhHHHHhcCCCC-ccEEEEcCCc
Confidence 467999999999999999999986 788999999986544 4578899999999999999999994 56655
Q ss_pred -----ecCC----------CCChhHHHHHhhhcccCCCCCeEEEecCh
Q 011149 161 -----HYEL----------PNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (492)
Q Consensus 161 -----~~~~----------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (492)
+++. |.+.++|+||+||+||.++.+..++++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~~~ 299 (305)
T d2bmfa2 252 MKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMG 299 (305)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEECS
T ss_pred eeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEECC
Confidence 3443 56889999999999999988888777654
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.45 E-value=6.7e-13 Score=130.07 Aligned_cols=118 Identities=14% Similarity=0.250 Sum_probs=104.4
Q ss_pred ccHHHHHHHHHHHH--ccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCe---EEEEecc
Q 011149 72 TSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATD 145 (492)
Q Consensus 72 ~~k~~~l~~ll~~~--~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~---~iLVaT~ 145 (492)
..|+.+|..+|... ..+.++|||++.....+.|...|.. ++.+..+||.++..+|..+++.|+++.. -+|++|.
T Consensus 100 S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~ 179 (346)
T d1z3ix1 100 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 179 (346)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred CHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecch
Confidence 46888888888664 3467999999999999999999985 7899999999999999999999988653 3788999
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCCeEEE
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~ 189 (492)
+.+.|||++.+++||+||++|++..+.|++||+.|.|.+..+.+
T Consensus 180 agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v 223 (346)
T d1z3ix1 180 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYI 223 (346)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEE
T ss_pred hhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEE
Confidence 99999999999999999999999999999999999997765544
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.42 E-value=6.4e-13 Score=124.27 Aligned_cols=123 Identities=15% Similarity=0.267 Sum_probs=90.0
Q ss_pred cccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHc--ccceeeecCCCCHHHHHHHHhhhcCC-CeEEE-Eecc
Q 011149 71 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFTVL-VATD 145 (492)
Q Consensus 71 ~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~iL-VaT~ 145 (492)
...|+..|.+++... ..+.++||||+.....+.+...+.. .+.+..+||++++.+|++++++|.++ ...+| ++|.
T Consensus 67 ~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~ 146 (244)
T d1z5za1 67 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 146 (244)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred hhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhcccccc
Confidence 346888888888654 4567999999999999999888864 57788899999999999999999875 45665 4557
Q ss_pred cccccCCCCCcCEEEecCCCCChhHHHHHhhhcccCCCCC--eEEEecCh
Q 011149 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG--TAILMFTS 193 (492)
Q Consensus 146 ~~~~Gidi~~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g--~~i~l~~~ 193 (492)
+.+.|+|++.+++||+|++||++..+.|+.||+.|.|.+. .++.|+..
T Consensus 147 ~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~ 196 (244)
T d1z5za1 147 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 196 (244)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred ccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeC
Confidence 8999999999999999999999999999999999999554 33434443
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.37 E-value=5.1e-13 Score=127.51 Aligned_cols=101 Identities=19% Similarity=0.253 Sum_probs=80.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccccccCCCCCcCEEEecCC-
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL- 164 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi~~v~~VI~~~~- 164 (492)
.++++||||++..+++.++..|++ ++.|.+|||.++.++++ +|++++.+|||||++++.|||+ +|.+||+.++
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~~~~~~~~~t~~~~~~~~~-~~~~vid~g~~ 109 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILATDIAEMGANL-CVERVLDCRTA 109 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCSEEEESSSTTCCTTC-CCSEEEECCEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhcCCcCEEEEechhhhceec-CceEEEecCce
Confidence 368999999999999999999996 78999999999987765 5778899999999999999999 5999996553
Q ss_pred ------------------CCChhHHHHHhhhcccCCCCCeEEEecC
Q 011149 165 ------------------PNDPETFVHRSGRTGRAGKEGTAILMFT 192 (492)
Q Consensus 165 ------------------P~~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (492)
|.+..+..||.||+||.+....++.++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 110 FKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 155 (299)
T ss_dssp EEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred eceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeC
Confidence 3577888999999999865555555554
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=99.22 E-value=8.9e-11 Score=101.51 Aligned_cols=124 Identities=22% Similarity=0.302 Sum_probs=98.2
Q ss_pred CcccHHHHHHH-HHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc
Q 011149 70 TATSKRTILSD-LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (492)
Q Consensus 70 ~~~~k~~~l~~-ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (492)
....|+.++.. +...+..+.++||+|.|.+..+.++..|.+ .++..+|+......+-+.+-++-..| .|.|||+++
T Consensus 15 T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~Ea~II~~Ag~~g--~VtIATNmA 92 (175)
T d1tf5a4 15 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMA 92 (175)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTS
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHHHHHHHHhccCCC--ceeehhhHH
Confidence 34466655544 445556788999999999999999999996 78889999886544444444444444 599999999
Q ss_pred cccCCCC---CcC-----EEEecCCCCChhHHHHHhhhcccCCCCCeEEEecChhh
Q 011149 148 ARGLDIP---NVD-----LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 148 ~~Gidi~---~v~-----~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (492)
.||.||. .|. |||....|.+..-..|-.||+||.|.+|.+.+|++-.|
T Consensus 93 GRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 93 GRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp STTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCH
Confidence 9999984 232 79999999999999999999999999999988886544
|
| >d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Retrovirus zinc finger-like domains superfamily: Retrovirus zinc finger-like domains family: Retrovirus zinc finger-like domains domain: HIV nucleocapsid species: Human immunodeficiency virus type 1, different isolates [TaxId: 11676]
Probab=98.98 E-value=2.1e-10 Score=74.91 Aligned_cols=38 Identities=21% Similarity=0.614 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCC
Q 011149 417 SSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDRSFGGACFNCGKSGHRASECPN 492 (492)
Q Consensus 417 ~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~c~~cg~~gh~a~~cp~ 492 (492)
.|++||+.||.+++|+.+.. ..||+||+.||||+|||+
T Consensus 3 ~C~~Cg~~GH~~~~Cp~~~~--------------------------------------~~C~~Cg~~GH~~~~Cp~ 40 (42)
T d2exfa1 3 KCFNCGKEGHTARNCRAPRK--------------------------------------KGCWKCGKEGHQMKDCTE 40 (42)
T ss_dssp CCTTTCCSSSCTTTCSSCCC--------------------------------------SSCSSSCCSSSCTTTCCS
T ss_pred ccccCCCcCcCcccCcCCCc--------------------------------------CccccCCCCCeecccCCC
Confidence 49999999999999986411 129999999999999995
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.54 E-value=4.5e-07 Score=79.41 Aligned_cols=124 Identities=24% Similarity=0.283 Sum_probs=95.0
Q ss_pred CcccHHHHH-HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecccc
Q 011149 70 TATSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (492)
Q Consensus 70 ~~~~k~~~l-~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (492)
....|+.++ .++...+....|+||.+.|.+..+.|+..|.+ .++..+|+..-...+-+.+-++=+. -.|-|||+++
T Consensus 15 T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~herEAeIIAqAG~~--GaVTIATNMA 92 (219)
T d1nkta4 15 TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR--GGVTVATNMA 92 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST--TCEEEEETTC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhHHHHHHHHHhcccC--CcEEeecccc
Confidence 344566554 44555567788999999999999999999985 8999999997443333333333333 3589999999
Q ss_pred cccCCCCC-----------------------------------------------c-----CEEEecCCCCChhHHHHHh
Q 011149 148 ARGLDIPN-----------------------------------------------V-----DLIIHYELPNDPETFVHRS 175 (492)
Q Consensus 148 ~~Gidi~~-----------------------------------------------v-----~~VI~~~~P~~~~~y~qr~ 175 (492)
.||.||.= | =|||-.....+..-=-|-.
T Consensus 93 GRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDnQLR 172 (219)
T d1nkta4 93 GRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLR 172 (219)
T ss_dssp STTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHH
T ss_pred CCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecccccccccccccc
Confidence 99999931 1 1688888888888889999
Q ss_pred hhcccCCCCCeEEEecChhh
Q 011149 176 GRTGRAGKEGTAILMFTSSQ 195 (492)
Q Consensus 176 GR~gR~g~~g~~i~l~~~~e 195 (492)
||+||.|.+|.+.+|++-.|
T Consensus 173 GRsGRQGDPGsSrFflSLeD 192 (219)
T d1nkta4 173 GRSGRQGDPGESRFYLSLGD 192 (219)
T ss_dssp HTSSGGGCCEEEEEEEETTS
T ss_pred ccccccCCCccceeEEeccH
Confidence 99999999999999987655
|
| >d2e29a1 d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: GUCT domain domain: ATP-dependent RNA helicase DDX50 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=3.6e-07 Score=67.99 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=69.3
Q ss_pred CCcccccCCCCeEEEEEeecCccccCCCChhHHHHHHhhhCCCC-cCccccEEEeecCccceeEeecCHHHHHHHHhhcC
Q 011149 275 SSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTA-ADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQI 353 (492)
Q Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~~~ig~i~~~~~~~~~gs~fdv~~~~a~~~i~~~~ 353 (492)
+.|||+++.+|++|+.+....+ ..++..++..|.+..+.. .+.|-+|.++++. +|++||||++..+++.+.|.
T Consensus 2 k~RSLLts~~g~~T~~l~~~~~----i~~~~y~w~~Lr~~L~e~~~~~I~~M~l~kd~--~GavFDVpse~~~~i~~~W~ 75 (85)
T d2e29a1 2 EPRSLITSDKGFVTMTLESLEE----IQDVSCAWKELNRKLSSNAVSQITRMCLLKGN--MGVCFDVPTTESERLQAEWH 75 (85)
T ss_dssp CCCCCCCCCCCEEEEEEECSSC----CSSTHHHHHHHHHHSCHHHHTTCEEEEECTTS--SEEEEEEEHHHHHHHHHHCC
T ss_pred ccccccccCCCcEEEEEecCcc----ccccHHHHHHHHHHccHHHHHhhheeEEecCC--CEEEEeccHHHHHHHHHHhc
Confidence 4689999999999999998864 357899999999988754 4568999999875 59999999999999999998
Q ss_pred CCCCceeee
Q 011149 354 PPGNTISKI 362 (492)
Q Consensus 354 ~~~i~~~~~ 362 (492)
+..+.++++
T Consensus 76 dsr~~ls~~ 84 (85)
T d2e29a1 76 DSDWILSVP 84 (85)
T ss_dssp SSSCEEECC
T ss_pred ccceEEecC
Confidence 876666654
|
| >d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Retrovirus zinc finger-like domains superfamily: Retrovirus zinc finger-like domains family: Retrovirus zinc finger-like domains domain: HIV nucleocapsid species: Human immunodeficiency virus type 2 [TaxId: 11709]
Probab=98.20 E-value=1.5e-07 Score=52.86 Aligned_cols=17 Identities=53% Similarity=1.218 Sum_probs=15.3
Q ss_pred CCcccCCCCCcccCCCC
Q 011149 475 GACFNCGKSGHRASECP 491 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp 491 (492)
-.|||||++||.||+|-
T Consensus 7 ikCfNCGkeGH~ar~Cr 23 (29)
T d1nc8a_ 7 IRCWNCGKEGHSARQCR 23 (29)
T ss_dssp CBCTTTSCBSSCGGGCC
T ss_pred eEeecCCccchhhhhcc
Confidence 45999999999999994
|
| >d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Retrovirus zinc finger-like domains superfamily: Retrovirus zinc finger-like domains family: Retrovirus zinc finger-like domains domain: HIV nucleocapsid species: Human immunodeficiency virus type 1, different isolates [TaxId: 11676]
Probab=97.74 E-value=4.3e-06 Score=53.91 Aligned_cols=17 Identities=59% Similarity=1.355 Sum_probs=15.9
Q ss_pred CcccCCCCCcccCCCCC
Q 011149 476 ACFNCGKSGHRASECPN 492 (492)
Q Consensus 476 ~c~~cg~~gh~a~~cp~ 492 (492)
.||+||+.||+|+|||+
T Consensus 3 ~C~~Cg~~GH~~~~Cp~ 19 (42)
T d2exfa1 3 KCFNCGKEGHTARNCRA 19 (42)
T ss_dssp CCTTTCCSSSCTTTCSS
T ss_pred ccccCCCcCcCcccCcC
Confidence 49999999999999994
|
| >d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Retrovirus zinc finger-like domains superfamily: Retrovirus zinc finger-like domains family: Retrovirus zinc finger-like domains domain: Nucleic acid binding protein p14 species: Mouse mammary tumor virus [TaxId: 11757]
Probab=97.70 E-value=5.5e-06 Score=44.30 Aligned_cols=16 Identities=50% Similarity=1.362 Sum_probs=15.0
Q ss_pred CcccCCCCCcccCCCC
Q 011149 476 ACFNCGKSGHRASECP 491 (492)
Q Consensus 476 ~c~~cg~~gh~a~~cp 491 (492)
-||.||++||+-+||-
T Consensus 4 vcfscgktghikkdck 19 (26)
T d1dsqa_ 4 VCFSCGKTGHIKRDCK 19 (26)
T ss_dssp BCTTTCCBSSCTTTTT
T ss_pred EEEecCCcccchhhhh
Confidence 4999999999999995
|
| >d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Retrovirus zinc finger-like domains superfamily: Retrovirus zinc finger-like domains family: Retrovirus zinc finger-like domains domain: Zinc finger protein ncp10 species: Moloney murine leukemia virus, MoMLV [TaxId: 11801]
Probab=97.60 E-value=1.1e-05 Score=48.78 Aligned_cols=18 Identities=39% Similarity=1.027 Sum_probs=16.2
Q ss_pred CCcccCCCCCcccCCCCC
Q 011149 475 GACFNCGKSGHRASECPN 492 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp~ 492 (492)
+-|--|.|.|||++|||+
T Consensus 11 DQCAyCke~GHW~~dCPk 28 (40)
T d1a6bb_ 11 DQCAYCKEKGHWAKDCPK 28 (40)
T ss_dssp SSCSSSCCTTCCTTSCSS
T ss_pred hhhHHHhhcCchhhhCcc
Confidence 449999999999999995
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.38 E-value=0.00037 Score=63.86 Aligned_cols=102 Identities=20% Similarity=0.255 Sum_probs=74.8
Q ss_pred cHHHHH-HHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc
Q 011149 73 SKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (492)
Q Consensus 73 ~k~~~l-~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (492)
-|..+. ..++..+..+.++++.+||...|.+.++.+.+. +.+..+||.++..+|.++++++++|+++|+|.|-.
T Consensus 116 GKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThs 195 (264)
T d1gm5a3 116 GKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHA 195 (264)
T ss_dssp SHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTT
T ss_pred cccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehH
Confidence 454443 334445566789999999999999999888753 56889999999999999999999999999999965
Q ss_pred c-cccCCCCCcCEEEecCCCCChhHHHHHhh
Q 011149 147 A-ARGLDIPNVDLIIHYELPNDPETFVHRSG 176 (492)
Q Consensus 147 ~-~~Gidi~~v~~VI~~~~P~~~~~y~qr~G 176 (492)
+ ...+.+.++.+||.=. ...-.|.||..
T Consensus 196 l~~~~~~f~~LglviiDE--qH~fgv~Qr~~ 224 (264)
T d1gm5a3 196 LIQEDVHFKNLGLVIIDE--QHRFGVKQREA 224 (264)
T ss_dssp HHHHCCCCSCCCEEEEES--CCCC-----CC
T ss_pred HhcCCCCccccceeeecc--ccccchhhHHH
Confidence 4 4467778898888432 12226777654
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.0015 Score=58.57 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=78.1
Q ss_pred ccHHHHHHH-HHHHHccCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc
Q 011149 72 TSKRTILSD-LITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (492)
Q Consensus 72 ~~k~~~l~~-ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (492)
.-|.++... +...+..+.++++.+||...+.+.++.+++. ..+..+|+.++..+|..+++.+.+|+.+|||.|-
T Consensus 87 sGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGth 166 (233)
T d2eyqa3 87 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 166 (233)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeeh
Confidence 356554443 4455567889999999999999999999852 4678899999999999999999999999999997
Q ss_pred cc-cccCCCCCcCEEEecCCCCChhHHHHHh
Q 011149 146 VA-ARGLDIPNVDLIIHYELPNDPETFVHRS 175 (492)
Q Consensus 146 ~~-~~Gidi~~v~~VI~~~~P~~~~~y~qr~ 175 (492)
.+ ..-+.++++.+||.-.- ..-.|-|+.
T Consensus 167 s~l~~~~~f~~LgLiIiDEe--H~fg~kQ~~ 195 (233)
T d2eyqa3 167 KLLQSDVKFKDLGLLIVDEE--HRFGVRHKE 195 (233)
T ss_dssp HHHHSCCCCSSEEEEEEESG--GGSCHHHHH
T ss_pred hhhccCCccccccceeeech--hhhhhHHHH
Confidence 54 44688888888874221 112556654
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.0059 Score=54.18 Aligned_cols=115 Identities=11% Similarity=0.128 Sum_probs=75.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v 156 (492)
..++||+++|++.|.++++.+.. .+.+..++|+.+..+....++. ..+|||+|+ .....+++.++
T Consensus 85 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~----~~~Ilv~TPgrl~~~~~~~~~~~~~l 160 (222)
T d2j0sa1 85 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPGRVFDMIRRRSLRTRAI 160 (222)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhcc----CCeEEeCCCCcHHhcccccccccccc
Confidence 45799999999999999988764 3578888999888777666654 467999997 33566788899
Q ss_pred CEEEe------cCCCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCce
Q 011149 157 DLIIH------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (492)
Q Consensus 157 ~~VI~------~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 211 (492)
.++|. ++. +....+..+ -+.=.+...+++++.+-...++.+.+.+..++.
T Consensus 161 ~~lVlDEaD~ll~~--~f~~~i~~I---~~~l~~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv 216 (222)
T d2j0sa1 161 KMLVLDEADEMLNK--GFKEQIYDV---YRYLPPATQVVLISATLPHEILEMTNKFMTDPI 216 (222)
T ss_dssp CEEEEETHHHHTST--TTHHHHHHH---HTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCE
T ss_pred eeeeecchhHhhhc--CcHHHHHHH---HHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCE
Confidence 98883 222 122222222 222234467777776654445555444443433
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.50 E-value=0.031 Score=48.64 Aligned_cols=117 Identities=20% Similarity=0.223 Sum_probs=73.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc------ccccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidi~~v 156 (492)
..++||.|+|++.|.++.+.+.. ...+..++|+.+..++.+.++ ..+|||+|+- -...+++.++
T Consensus 72 ~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~-----~~~IlV~TP~~l~~~l~~~~~~~~~l 146 (208)
T d1hv8a1 72 GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKNV 146 (208)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTSC
T ss_pred CcceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcC-----CCCEEEEChHHHHHHHHcCCCCcccC
Confidence 45899999999999999888764 356788899988777665553 3579999962 2456788999
Q ss_pred CEEEecCC----CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCcee
Q 011149 157 DLIIHYEL----PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (492)
Q Consensus 157 ~~VI~~~~----P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (492)
.++|.-+. -......+.++=+. -++...+++++.+-...+..+.+.+..++..
T Consensus 147 ~~lViDEad~l~~~~~~~~i~~I~~~---~~~~~Q~i~~SAT~~~~v~~~~~~~l~~~~~ 203 (208)
T d1hv8a1 147 KYFILDEADEMLNMGFIKDVEKILNA---CNKDKRILLFSATMPREILNLAKKYMGDYSF 203 (208)
T ss_dssp CEEEEETHHHHHTTTTHHHHHHHHHT---SCSSCEEEEECSSCCHHHHHHHHHHCCSEEE
T ss_pred cEEEEEChHHhhcCCChHHHHHHHHh---CCCCCeEEEEEccCCHHHHHHHHHHCCCCeE
Confidence 98874221 01111222222221 1234567777765444555565555444443
|
| >d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Retrovirus zinc finger-like domains superfamily: Retrovirus zinc finger-like domains family: Retrovirus zinc finger-like domains domain: Nucleic acid binding protein p14 species: Mouse mammary tumor virus [TaxId: 11757]
Probab=95.27 E-value=0.0032 Score=36.09 Aligned_cols=17 Identities=47% Similarity=0.864 Sum_probs=15.3
Q ss_pred CCcccCCCCCcccCCCC
Q 011149 475 GACFNCGKSGHRASECP 491 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp 491 (492)
+-|-+|.+--|||+||-
T Consensus 3 ~lCPrC~kG~HWa~~Cr 19 (31)
T d1dsva_ 3 GLCPRCKKGYHWKSECK 19 (31)
T ss_dssp CBCTTTCSSBSCTTTCC
T ss_pred ccCccccCcchHHHHhh
Confidence 35999999999999995
|
| >d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Retrovirus zinc finger-like domains superfamily: Retrovirus zinc finger-like domains family: Retrovirus zinc finger-like domains domain: Nucleocapsid protein from mason-pfizer monkey virus (MPMV) species: Mason-pfizer monkey virus [TaxId: 11855]
Probab=95.22 E-value=0.004 Score=35.86 Aligned_cols=17 Identities=41% Similarity=0.941 Sum_probs=15.3
Q ss_pred CCcccCCCCCcccCCCC
Q 011149 475 GACFNCGKSGHRASECP 491 (492)
Q Consensus 475 ~~c~~cg~~gh~a~~cp 491 (492)
+-|-+|.+--|||+||-
T Consensus 3 ~lCPrC~kG~HWa~~Cr 19 (32)
T d1cl4a_ 3 GLCPRCKRGKHWANECK 19 (32)
T ss_dssp CSCSSCSSCSSCSTTCC
T ss_pred ccCccccCcchHHHHhh
Confidence 35999999999999995
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.033 Score=48.36 Aligned_cols=116 Identities=18% Similarity=0.126 Sum_probs=73.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCC
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPN 155 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~ 155 (492)
..++||.|+|++.+.++++.+.. ...+..++++....++...++. ..+|||+|+ .....+++.+
T Consensus 71 ~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~ivv~TPgrl~~~~~~~~~~~~~ 146 (206)
T d1veca_ 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDD----TVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTS----CCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CcceEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHh----ccCeEEeCCccccccccchhccccc
Confidence 45799999999999999988763 2456677888888777766654 678999997 3344577888
Q ss_pred cCEEEecC----CCCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCc
Q 011149 156 VDLIIHYE----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210 (492)
Q Consensus 156 v~~VI~~~----~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~ 210 (492)
+.++|.-+ +-.+....+.++=+.- .+...+++++.+-...++.+.+.+..++
T Consensus 147 l~~lVlDEaD~ll~~~f~~~i~~I~~~~---~~~~Q~~l~SAT~~~~v~~l~~~~l~~P 202 (206)
T d1veca_ 147 VQMIVLDEADKLLSQDFVQIMEDIILTL---PKNRQILLYSATFPLSVQKFMNSHLEKP 202 (206)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHS---CTTCEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred cceEEEeccccccccchHHHHHHHHHhC---CCCCEEEEEEecCCHHHHHHHHHHCCCC
Confidence 99887311 1112222222222211 2335677777665555666665554443
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.041 Score=47.83 Aligned_cols=115 Identities=16% Similarity=0.236 Sum_probs=68.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc------cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCc
Q 011149 89 GKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v 156 (492)
.++||.++|++.+.++.+.+... +.+..++|+.+.......+. ....+|||+|+ +-...+++.++
T Consensus 70 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~ilI~TP~rl~~~~~~~~~~l~~l 146 (207)
T d1t6na_ 70 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKHI 146 (207)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred ceEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHH---hcCCCEEEeCcchhhhhccCCceecccc
Confidence 47999999999999999888641 34677788887766554433 23568999998 23345788899
Q ss_pred CEEEecCCC--CChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHh
Q 011149 157 DLIIHYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (492)
Q Consensus 157 ~~VI~~~~P--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (492)
.++|.-+.- .+...|.+-+-+.-+.-.....+++++.+-...++.+.+.+
T Consensus 147 ~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~ 198 (207)
T d1t6na_ 147 KHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 198 (207)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTT
T ss_pred ceeehhhhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHHH
Confidence 988842210 11112333232323222344567776665433344444433
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=92.79 E-value=0.15 Score=45.05 Aligned_cols=118 Identities=15% Similarity=0.170 Sum_probs=70.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCcC
Q 011149 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (492)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v~ 157 (492)
.++||.|+|++.|.++...+.. .+.+..+.|+....++.+... ...+|||+|+ +....+++.++.
T Consensus 99 ~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivV~TP~~l~~~~~~~~~~l~~v~ 174 (238)
T d1wrba1 99 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQ----MGCHLLVATPGRLVDFIEKNKISLEFCK 174 (238)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHS----SCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcc----cCCceeecCHHHHHhHHccCceeccccc
Confidence 4799999999999999887753 366778888776665544333 2678999998 334567788899
Q ss_pred EEEecCCC----CCh-hHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCc
Q 011149 158 LIIHYELP----NDP-ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210 (492)
Q Consensus 158 ~VI~~~~P----~~~-~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~ 210 (492)
++|.-+.- ... ....+-+.+.-+.-.....+++++.+-...++.+.+.+..++
T Consensus 175 ~lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~~~~~~p 232 (238)
T d1wrba1 175 YIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNY 232 (238)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred eeeeehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHHHHCCCC
Confidence 88742210 011 111111222222212234677777665455566655554443
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.59 E-value=0.34 Score=41.49 Aligned_cols=121 Identities=17% Similarity=0.089 Sum_probs=77.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v 156 (492)
..++++.+++...+.+....+.. .+.+..++|+.........+.. ..+|||+|+ +-...+++.++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~Ili~TP~~l~~~l~~~~~~l~~l 144 (206)
T d1s2ma1 69 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE----TVHILVGTPGRVLDLASRKVADLSDC 144 (206)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTS----CCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred cccceeeccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcc----cceEEEECCcccccccccceeecccc
Confidence 45789999999999888777653 4678899999988877766543 678999998 33456788899
Q ss_pred CEEEecCC--CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceec
Q 011149 157 DLIIHYEL--PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (492)
Q Consensus 157 ~~VI~~~~--P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (492)
.++|.=+. =.+. .|...+-+.-+.=++...+++++.+-...+..+.+.+..++..+
T Consensus 145 ~~lV~DEaD~l~~~-~f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~l~~P~~I 202 (206)
T d1s2ma1 145 SLFIMDEADKMLSR-DFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEI 202 (206)
T ss_dssp CEEEEESHHHHSSH-HHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred eEEEeechhhhhhh-hhHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEE
Confidence 98873221 1111 23333333233223456777777654455666665555555444
|
| >d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Retrovirus zinc finger-like domains superfamily: Retrovirus zinc finger-like domains family: Retrovirus zinc finger-like domains domain: HIV nucleocapsid species: Human immunodeficiency virus type 2 [TaxId: 11709]
Probab=92.11 E-value=0.028 Score=31.13 Aligned_cols=19 Identities=5% Similarity=0.027 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 011149 416 RSSRSWGSDDEDGFSSSRG 434 (492)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~ 434 (492)
--|++||.+||.++.|.-+
T Consensus 7 ikCfNCGkeGH~ar~CrAP 25 (29)
T d1nc8a_ 7 IRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSS
T ss_pred eEeecCCccchhhhhccCc
Confidence 4599999999999999654
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.01 E-value=0.076 Score=46.20 Aligned_cols=117 Identities=14% Similarity=0.128 Sum_probs=67.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----ccceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v 156 (492)
...+||+++|++.+.++...+.. .+.+..++++.+..++...+ + ..+|+|+|+ .-...+++.++
T Consensus 78 ~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~IvI~TP~~l~~~~~~~~~~l~~l 152 (212)
T d1qdea_ 78 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVVGTPGRVFDNIQRRRFRTDKI 152 (212)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CcceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHh---c--CCcEEEECCCccccccccCceecCcc
Confidence 45899999999999999988864 24456666665554444332 2 457999997 34566788999
Q ss_pred CEEEecCCC----C-ChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCceec
Q 011149 157 DLIIHYELP----N-DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (492)
Q Consensus 157 ~~VI~~~~P----~-~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (492)
.++|.-+.- . -.+.+.+..-+. .+...+++++.+-...++.+.+.+..++..+
T Consensus 153 ~~lVlDEad~lld~~f~~~v~~I~~~~----~~~~Q~vl~SAT~~~~v~~l~~~~l~~Pv~i 210 (212)
T d1qdea_ 153 KMFILDEADEMLSSGFKEQIYQIFTLL----PPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 210 (212)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHS----CTTCEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred eEEeehhhhhhcccchHHHHHHHHHhC----CCCCeEEEEEeeCCHHHHHHHHHHCCCCEEE
Confidence 988832110 0 122223323222 2345677777665555677766665555443
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.93 E-value=0.25 Score=43.28 Aligned_cols=78 Identities=17% Similarity=0.303 Sum_probs=52.8
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHcc-----c----ceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc-cccc-
Q 011149 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-----I----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARG- 150 (492)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-----~----~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~~G- 150 (492)
+....++.++||.+||+..++++++.+++. + .+..+++..+..++.+.++... ..+|||+|+- +.+.
T Consensus 80 ~~~~~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~Ilv~Tp~~l~~~~ 157 (237)
T d1gkub1 80 LFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLR--NFKIVITTTQFLSKHY 157 (237)
T ss_dssp HHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGG--GCSEEEEEHHHHHHCS
T ss_pred HHHHHhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhcccc--ccceeccChHHHHHhh
Confidence 344456679999999999999999888742 2 2345677777888887777655 3568999962 2222
Q ss_pred CCCCCcCEEEe
Q 011149 151 LDIPNVDLIIH 161 (492)
Q Consensus 151 idi~~v~~VI~ 161 (492)
.++..+++||.
T Consensus 158 ~~~~~~~~vVv 168 (237)
T d1gkub1 158 RELGHFDFIFV 168 (237)
T ss_dssp TTSCCCSEEEE
T ss_pred hhcCCCCEEEE
Confidence 34456666553
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.97 E-value=0.1 Score=45.52 Aligned_cols=117 Identities=10% Similarity=0.137 Sum_probs=64.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEecc------cccccCCCCCc
Q 011149 88 GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (492)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidi~~v 156 (492)
..++||++||++.|.++++.+... +.+..++++....+ ..........+|||+|+ +....+++.++
T Consensus 80 ~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l 156 (218)
T d2g9na1 80 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 156 (218)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCS---TTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhH---HHHHHhcCCCEEEEeCChhHHHHHhcCCcccccc
Confidence 457999999999999999887742 34444444322211 12233445678999998 33445777888
Q ss_pred CEEEecCC----CCChhHHHHHhhhcccCCCCCeEEEecChhhHHHHHHHHHHhCCCc
Q 011149 157 DLIIHYEL----PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210 (492)
Q Consensus 157 ~~VI~~~~----P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~ 210 (492)
.+||.=+. -.+....+.++=+. =.+...+++++.+-...++.+.+.+..++
T Consensus 157 ~~lVlDEaD~ll~~~f~~~~~~Il~~---~~~~~Q~il~SAT~~~~v~~~~~~~l~~p 211 (218)
T d2g9na1 157 KMFVLDEADEMLSRGFKDQIYDIFQK---LNSNTQVVLLSATMPSDVLEVTKKFMRDP 211 (218)
T ss_dssp CEEEEESHHHHHHTTCHHHHHHHHHH---SCTTCEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred eEEEeeecchhhcCchHHHHHHHHHh---CCCCCeEEEEEecCCHHHHHHHHHHCCCC
Confidence 88873111 00111222222111 12335677777655445555655544443
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=84.52 E-value=9 Score=31.26 Aligned_cols=70 Identities=26% Similarity=0.336 Sum_probs=52.2
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-----cceeeecCCCCHHHHHHHHhhhcCCCeEEEEeccc------ccccCCCCC
Q 011149 87 KGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPN 155 (492)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidi~~ 155 (492)
.+.++||.+|++..+++.++.+.+. ..+..+|++....++...... ..++|+|+. ...-+.+.+
T Consensus 51 ~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~i~t~~~~~~~~~~~~~~~~~ 125 (200)
T d1wp9a1 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-----AKVIVATPQTIENDLLAGRISLED 125 (200)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-----CSEEEECHHHHHHHHHTTSCCTTS
T ss_pred cCCcEEEEcCchHHHHHHHHHHHHhhcccccceeeeecccchhHHHHhhhc-----ccccccccchhHHHHhhhhhhccc
Confidence 4678999999999999998888753 457778999999888877655 358888862 223345567
Q ss_pred cCEEEe
Q 011149 156 VDLIIH 161 (492)
Q Consensus 156 v~~VI~ 161 (492)
+++||.
T Consensus 126 ~~~vIi 131 (200)
T d1wp9a1 126 VSLIVF 131 (200)
T ss_dssp CSEEEE
T ss_pred cceEEE
Confidence 787773
|