Citrus Sinensis ID: 011156

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--

MAGLYRRALPSPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAVILNALAIDPGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRTNESSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVARFKYPPHWVPLALLWEAMDTIDKATGHPRGFMIISRFHKAPSVLYTVSCRHEGWSKVAKYLTEDVPHRLKMNDVKDVENLLSLVFKSAPVDLKEFIKWVAEVRRQDVAGVSSSEEEKARLIIKEEVLKQIKETEIFEHINRWLGSEISVCQGYKQTLPEIAANVCCQGAQLLAGQLSSLDETCCKETNVVLVQAGGVSPMTLVSGKITTNGVEQGIDMLVPSSQTEPRNILCDFDRSNCKGMHPSTADVLTVILLALPQHTWSGIKEEKLLTQLNRCVSIENIPSLLQQEVLHLRRQLHFLMIDLHEPSASG

cccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccEEEEEEccccccccEEEEHHHHHHHHcccccccccccEEEEEEEccccccEEEEEEcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEccccccccccccccEEEEEEEEEcccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccc

cccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccccHHHccccccHHHHHHccccHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHcccccEEEEEEccHHccccccccccccccccccccEEEEEEcccccccccEEcHHHHHHHHcccccccccccEEEEEEcccccccEEEEEEcccccHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEEEcccccEEEEEEEEEcccccccEEEEEEccccccccccccccccccEEccccccHHHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHEEEcccccccc

maglyrralpsppaiefaspegkQLFTEALGEGTMEGFFKLISYYqtqsepaycGLATLAVILNALaidpgrtwkgpwrwfddtmldcckplskikaegitfGKVACLAYcngakveafrtnessidDFRRHVIscassedchvissyhrgvfkqtgsghfspiggyhaRKDLVLILDVarfkypphwvpLALLWEAMDTidkatghprgfmiisrfhkapsvLYTVSCRHEGWSKVAKYLTedvphrlkmndvKDVENLLSLVFKSAPVDLKEFIKWVAEVRRqdvagvsssEEEKARLIIKEEVLKQIKETEIFEHINRWLGSEISVCQGYKQTLPEIAANVCCQGAQLLAGQlssldetcckETNVVLVQaggvspmtlvsgkittngveqgidmlvpssqteprnilcdfdrsnckgmhpstADVLTVILLALpqhtwsgikEEKLLTQLNRCVSIENIPSLLQQEVLHLRRQLHFLMIdlhepsasg

maglyrralpsppaiefaspeGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAVILNALAIDPGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRTNESSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVARFKYPPHWVPLALLWEAMDTIDKATGHPRGFMIISRFHKAPSVLYTVSCRHEGWSKVAKYLTEDVPHRLKMNDVKDVENLLSLVFKSAPVDLKEFIKWVAEVRRqdvagvssseeekaRLIIKEEVLKQIKETEIFEHINRWLGSEISVCQGYKQTLPEIAANVCCQGAQLLAGQLSSLDETCCKETNVVLVQAGGVSPMTLVSGKITTNGVEQGIDMLvpssqteprNILCDFDRSNCKGMHPSTADVLTVILLALPQHTWSGIKEEKLLTQLNRCVSIENIPSLLQQEVLHLRRQLHFLMidlhepsasg

************************LFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAVILNALAIDPGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRTNESSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVARFKYPPHWVPLALLWEAMDTIDKATGHPRGFMIISRFHKAPSVLYTVSCRHEGWSKVAKYLTEDVPHRLKMNDVKDVENLLSLVFKSAPVDLKEFIKWVAEVRRQDVA*********ARLIIKEEVLKQIKETEIFEHINRWLGSEISVCQGYKQTLPEIAANVCCQGAQLLAGQLSSLDETCCKETNVVLVQAGGVSPMTLVSGKITTNGVEQGIDMLV*******RNILCDFDRSNCKGMHPSTADVLTVILLALPQHTWSGIKEEKLLTQLNRCVSIENIPSLLQQEVLHLRRQLHFLMIDL*******

**GLYRRALPSPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAVILNALAIDPGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRTNESSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVARFKYPPHWVPLALLWEAMDTIDKATGHPRGFMIISRFHKAPSVLYTVSCRHEGWSKVAKYLTEDVPHRLKMNDVKDVENLLSLVFKSAPVDLKEFIKWVAEVRRQ***********KARLIIKEEVLKQIKETEIFEHINRWLGSEI******KQTLPEIAANVCCQGAQLLAGQLSSLDETCCKETNVVLVQAGGVSPMTLVSGKITTNGVEQGIDMLVPSSQT**************KGMHPSTADVLTVILLALPQHTWSGIKEEKLLTQLNRCVSIENIPSLLQQEVLHLRRQLHFLMIDLHE*****

MAGLYRRALPSPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAVILNALAIDPGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRTNESSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVARFKYPPHWVPLALLWEAMDTIDKATGHPRGFMIISRFHKAPSVLYTVSCRHEGWSKVAKYLTEDVPHRLKMNDVKDVENLLSLVFKSAPVDLKEFIKWVAEVRRQ***********KARLIIKEEVLKQIKETEIFEHINRWLGSEISVCQGYKQTLPEIAANVCCQGAQLLAGQLSSLDETCCKETNVVLVQAGGVSPMTLVSGKITTNGVEQGIDMLVPSSQTEPRNILCDFDRSNCKGMHPSTADVLTVILLALPQHTWSGIKEEKLLTQLNRCVSIENIPSLLQQEVLHLRRQLHFLMIDLHEPSASG

****YRRALPSPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAVILNALAIDPGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRTNESSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVARFKYPPHWVPLALLWEAMDTIDKATGHPRGFMIISRFHKAPSVLYTVSCRHEGWSKVAKYLTEDVPHRLKMNDVKDVENLLSLVFKSAPVDLKEFIKWVAEVRRQDVAGVSSSEEEKARLIIKEEVLKQIKETEIFEHINRWLGSEISVCQGYKQTLPEIAANVCCQGAQLLAGQLSSLDETCCKETNVVLVQAGGVSPMTLVSGKITTNGVEQGIDMLVPSSQTEPRNILCDFDRSNCKGMHPSTADVLTVILLALPQHTWSGIKEEKLLTQLNRCVSIENIPSLLQQEVLHLRRQLHFLMIDLHE*****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		492	2.2.26 [Sep-21-2011]
Q2QKL5		479	Glutathione gamma-glutamy	N/A	no	0.936	0.962	0.638	1e-175
Q2TSC7		501	Glutathione gamma-glutamy	N/A	no	0.973	0.956	0.582	1e-173
Q2TE74		482	Glutathione gamma-glutamy	N/A	no	0.953	0.973	0.623	1e-172
Q9S7Z3		485	Glutathione gamma-glutamy	yes	no	0.926	0.940	0.577	1e-164
Q9SWW5		500	Glutathione gamma-glutamy	N/A	no	0.973	0.958	0.571	1e-160
Q9ZWB7		452	Glutathione gamma-glutamy	no	no	0.882	0.960	0.542	1e-156
Q10075		414	Glutathione gamma-glutamy	yes	no	0.534	0.635	0.441	2e-63

>sp\|Q2QKL5\|PCS3_LOTJA Glutathione gamma-glutamylcysteinyltransferase 3 OS=Lotus japonicus GN=PCS3 PE=2 SV=1	Back alignment and function desciption

 Score =  616 bits (1589), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 304/476 (63%), Positives = 371/476 (77%), Gaps = 15/476 (3%)

Query: 2   AGLYRRALPSPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAV 61
           AGLYRR LPSPPAI+FASPEGK++F EALG+GTMEGFFKL+SYYQTQSEPAYCGLATL V
Sbjct: 4   AGLYRRVLPSPPAIDFASPEGKKIFVEALGQGTMEGFFKLVSYYQTQSEPAYCGLATLTV 63

Query: 62  ILNALAIDPGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRT 121
           +LNAL+IDPGR WKGPWRWFDD+MLDCC+PL KIK +GITFGKVACLA CNGA VEAFR+
Sbjct: 64  VLNALSIDPGRKWKGPWRWFDDSMLDCCEPLEKIKVQGITFGKVACLARCNGAHVEAFRS 123

Query: 122 NESSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVAR 181
           NES++ DFR  VISC SSED H+I SYHR   KQTG GHFSPIGGYHA +D+VLILDV R
Sbjct: 124 NESTVSDFRDRVISCCSSEDRHLIVSYHRSGLKQTGEGHFSPIGGYHAERDMVLILDVTR 183

Query: 182 FKYPPHWVPLALLWEAMDTIDKATGHPRGFMIISRFHKAPSVLYTVSCRHEGWSKVAKYL 241
           +KYPPHWVPL LLW+AM+TID+ATG  RG+MIIS+  +APS+LYTVSCRHEGWS VAK+L
Sbjct: 184 YKYPPHWVPLTLLWDAMNTIDRATGLQRGYMIISKLKRAPSILYTVSCRHEGWSSVAKFL 243

Query: 242 TEDVPHRLKMNDVKDVENLLSLVFKSAPVDLKEFIKWVAEVRRQDVAGVSSSEEEKARLI 301
           TE+VP  LK  D+KD++ +LS+VFKS P +L+EFI W+AEVRRQ+   ++ SEEEK RL 
Sbjct: 244 TENVPLLLKSEDLKDIQEVLSVVFKSPPSELREFITWIAEVRRQEDGNLTLSEEEKGRLA 303

Query: 302 IKEEVLKQIKETEIFEHINRWLGSEISVCQGY-----KQTLPEIAANVCCQGAQLLAGQL 356
           IK ++L+QI+ T +F+H+  WL S+ S C+       +  LPE+AA VCCQGA LL G  
Sbjct: 304 IKADILEQIRTTTLFKHVTSWLDSQRSRCRTIAKLQDRDMLPELAAGVCCQGACLLTGCC 363

Query: 357 SSLDETCCKETNVVLVQAGGVSPMTLVSGKITT-NGVEQGIDMLVPSSQTEPRNILCDFD 415
               + CC + +V  +     + +TLVSG + + +  EQG+D+LVP  Q  P        
Sbjct: 364 LPGGK-CCSQIDVKHLNVDHKNIVTLVSGTVASGSSSEQGVDVLVPLCQMGPEG------ 416

Query: 416 RSNCKGMHPSTADVLTVILLALPQHTWSGIKEEKLLTQLNRCVSIENIPSLLQQEV 471
             +C GMHPSTADVLTV+LLALP HTWSGIKEEKL  ++   ++ EN+P LLQ+EV
Sbjct: 417 --HCIGMHPSTADVLTVLLLALPLHTWSGIKEEKLCAEVTSLLTTENLPPLLQEEV 470

Involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants.
Lotus japonicus (taxid: 34305)
EC: 2EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 5

>sp\|Q2TSC7\|PCS1_LOTJA Glutathione gamma-glutamylcysteinyltransferase 1 OS=Lotus japonicus GN=PCS1 PE=2 SV=1	Back alignment and function description

>sp\|Q2TE74\|PCS2_LOTJA Glutathione gamma-glutamylcysteinyltransferase 2 OS=Lotus japonicus GN=PCS2 PE=2 SV=2	Back alignment and function description

>sp\|Q9S7Z3\|PCS1_ARATH Glutathione gamma-glutamylcysteinyltransferase 1 OS=Arabidopsis thaliana GN=PCS1 PE=1 SV=1	Back alignment and function description

>sp\|Q9SWW5\|PCS1_WHEAT Glutathione gamma-glutamylcysteinyltransferase 1 OS=Triticum aestivum GN=PCS1 PE=2 SV=1	Back alignment and function description

>sp\|Q9ZWB7\|PCS2_ARATH Glutathione gamma-glutamylcysteinyltransferase 2 OS=Arabidopsis thaliana GN=PCS2 PE=2 SV=1	Back alignment and function description

>sp\|Q10075\|PCS_SCHPO Glutathione gamma-glutamylcysteinyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H1.10 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		492
224129604		496	predicted protein [Populus trichocarpa]	0.995	0.987	0.705	0.0
449445620		487	PREDICTED: glutathione gamma-glutamylcys	0.971	0.981	0.644	0.0
356505041		499	PREDICTED: glutathione gamma-glutamylcys	0.989	0.975	0.655	0.0
255577926		502	conserved hypothetical protein [Ricinus	0.971	0.952	0.625	1e-179
160213052		501	phytochelatin synthase [Nicotiana glauca	0.973	0.956	0.605	1e-178
255964729		491	phytochelatin synthase [Sonchus arvensis	0.949	0.951	0.627	1e-178
388497750		489	unknown [Lotus japonicus]	0.971	0.977	0.632	1e-177
225438071		481	PREDICTED: glutathione gamma-glutamylcys	0.930	0.952	0.622	1e-176
122202937		479	RecName: Full=Glutathione gamma-glutamyl	0.936	0.962	0.638	1e-174
28569704		503	phytochelatin synthase [Solanum tuberosu	0.971	0.950	0.607	1e-174

>gi\|224129604\|ref\|XP_002320627.1\| predicted protein [Populus trichocarpa] gi\|222861400\|gb\|EEE98942.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/495 (70%), Positives = 406/495 (82%), Gaps = 5/495 (1%)

Query: 1   MAGLYRRALPSPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLA 60
           +AG YRRALPSPPAIEFASPEGKQLFTEAL  GTM  FFKLISYYQTQSEPAYCGLA+LA
Sbjct: 3   VAGFYRRALPSPPAIEFASPEGKQLFTEALEGGTMNSFFKLISYYQTQSEPAYCGLASLA 62

Query: 61  VILNALAIDPGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFR 120
           ++LNALAIDPGRTWKGPWRWFDD+MLDCC+PL KIK +GITFGKVACLA+CN AKVE FR
Sbjct: 63  MVLNALAIDPGRTWKGPWRWFDDSMLDCCEPLVKIKEKGITFGKVACLAHCNAAKVETFR 122

Query: 121 TNESSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVA 180
           TNE ++D FRR V+SC SSED ++ISSYHRG FKQTGSGHFSPIGGYHA KD+VLILDVA
Sbjct: 123 TNEITVDGFRRFVVSCNSSEDYYIISSYHRGAFKQTGSGHFSPIGGYHAGKDMVLILDVA 182

Query: 181 RFKYPPHWVPLALLWEAMDTIDKATGHPRGFMIISRFHKAPSVLYTVSCRHEGWSKVAKY 240
           RFKYPPHWVPL LLWEAM+TIDKATGH RGFMI+S+  KA S+LYT+SCRH+GWS VA Y
Sbjct: 183 RFKYPPHWVPLELLWEAMNTIDKATGHHRGFMILSKLDKASSILYTLSCRHKGWSSVANY 242

Query: 241 LTEDVPHRLKMNDVKDVENLLSLVFKSAPVDLKEFIKWVAEVRRQDVAGVSSSEEEKARL 300
           L+ DVPH LK  DVKDVE +LS+VFKS P DL+EFIKWVAEVRRQD  G+  SEEEK RL
Sbjct: 243 LSADVPHLLKSEDVKDVEEVLSVVFKSPPADLREFIKWVAEVRRQDDGGIILSEEEKGRL 302

Query: 301 IIKEEVLKQIKETEIFEHINRWLGSEISVCQ----GYKQTLPEIAANVCCQGAQLLAGQL 356
            IKEEVLKQ++ TE+F+++ RWL SEIS C+    G+   LPEIAANVCCQGA+LL    
Sbjct: 303 SIKEEVLKQVQGTELFKYVTRWLISEISTCKGAISGHNNELPEIAANVCCQGAKLLTENF 362

Query: 357 SSLDETCCKETNVVLVQAGGVSPMTLVSGKITTNGVEQGIDMLVPSSQTEPRNILCDFDR 416
           SSLD    K+  V   ++ G  P+T+VSG + T+G EQG+DMLVP SQT   + LCD D+
Sbjct: 363 SSLDCMVFKKAGVKFWKSDGEKPVTVVSGTVFTDGSEQGVDMLVPLSQTAASS-LCDLDQ 421

Query: 417 SNCKGMHPSTADVLTVILLALPQHTWSGIKEEKLLTQLNRCVSIENIPSLLQQEVLHLRR 476
           + C G HPS  DVL+V++ +L Q+TWS IK+EKL  ++N  VSI+N+P LLQ+EVLHLRR
Sbjct: 422 NGCHGFHPSAGDVLSVLIFSLHQNTWSNIKDEKLQAEINSLVSIDNVPPLLQEEVLHLRR 481

Query: 477 QLHFLMIDLHEPSAS 491
           QLHFL ID+   SAS
Sbjct: 482 QLHFLTIDIGLASAS 496

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449445620\|ref\|XP_004140570.1\| PREDICTED: glutathione gamma-glutamylcysteinyltransferase 3-like [Cucumis sativus] gi\|449487363\|ref\|XP_004157589.1\| PREDICTED: glutathione gamma-glutamylcysteinyltransferase 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356505041\|ref\|XP_003521301.1\| PREDICTED: glutathione gamma-glutamylcysteinyltransferase 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|255577926\|ref\|XP_002529835.1\| conserved hypothetical protein [Ricinus communis] gi\|223530663\|gb\|EEF32536.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|160213052\|gb\|ABX10958.1\| phytochelatin synthase [Nicotiana glauca]	Back alignment and taxonomy information

>gi\|255964729\|gb\|ACU44656.1\| phytochelatin synthase [Sonchus arvensis]	Back alignment and taxonomy information

>gi\|388497750\|gb\|AFK36941.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|225438071\|ref\|XP_002272237.1\| PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|122202937\|sp\|Q2QKL5.1\|PCS3_LOTJA RecName: Full=Glutathione gamma-glutamylcysteinyltransferase 3; AltName: Full=LjPCS3-7N; AltName: Full=Phytochelatin synthase 3 gi\|67773366\|gb\|AAY81940.1\| phytochelatin synthase [Lotus japonicus] gi\|67773368\|gb\|AAY81941.1\| phytochelatin synthase PCS3-7N [Lotus japonicus]	Back alignment and taxonomy information

>gi\|28569704\|emb\|CAD68109.1\| phytochelatin synthase [Solanum tuberosum] gi\|28569706\|emb\|CAD68110.1\| phytochelatin synthase [Solanum tuberosum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		492
TAIR\|locus:2172497		485	CAD1 "CADMIUM SENSITIVE 1" [Ar	0.947	0.960	0.582	1e-155
TAIR\|locus:2024172		452	PCS2 "phytochelatin synthase 2	0.762	0.829	0.591	6.9e-145
DICTYBASE\|DDB_G0291187		626	DDB_G0291187 "glutathione gamm	0.534	0.420	0.494	1.8e-74
POMBASE\|SPAC3H1.10		414	pcs2 "phytochelatin synthetase	0.532	0.632	0.443	5.4e-61
WB\|WBGene00003960		426	pcs-1 [Caenorhabditis elegans	0.447	0.516	0.473	8e-53

TAIR\|locus:2172497 CAD1 "CADMIUM SENSITIVE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1518 (539.4 bits), Expect = 1.0e-155, P = 1.0e-155
 Identities = 280/481 (58%), Positives = 374/481 (77%)

Query:     1 MAGLYRRALPSPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLA 60
             MA LYRR+LPSPPAI+F+S EGK +F EAL +GTMEGFF+LISY+QTQSEPAYCGLA+L+
Sbjct:     3 MASLYRRSLPSPPAIDFSSAEGKLIFNEALQKGTMEGFFRLISYFQTQSEPAYCGLASLS 62

Query:    61 VILNALAIDPGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFR 120
             V+LNAL+IDPGR WKGPWRWFD++MLDCC+PL  +K +GI+FGKV CLA+C+GAKVEAFR
Sbjct:    63 VVLNALSIDPGRKWKGPWRWFDESMLDCCEPLEVVKEKGISFGKVVCLAHCSGAKVEAFR 122

Query:   121 TNESSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVA 180
             T++S+IDDFR+ V+ C SSE+CH+IS+YHRGVFKQTG+GHFSPIGGY+A +D+ LILDVA
Sbjct:   123 TSQSTIDDFRKFVVKCTSSENCHMISTYHRGVFKQTGTGHFSPIGGYNAERDMALILDVA 182

Query:   181 RFKYPPHWVPLALLWEAMDTIDKATGHPRGFMIISRFHKAPSVLYTVSCRHEGWSKVAKY 240
             RFKYPPHWVPL LLWEAMD+ID++TG  RGFM+ISR H+ P +LYT+SC+ E W ++AKY
Sbjct:   183 RFKYPPHWVPLKLLWEAMDSIDQSTGKRRGFMLISRPHREPGLLYTLSCKDESWIEIAKY 242

Query:   241 LTEDVPHRLKMNDVKDVENLLSLVFKSAPVDLKEFIKWVAEVRRQDVAGVSSSEEEKARL 300
             L EDVP  +    V  VE ++S+VFKS P +  +FI+WVAE+R  + +  + S EEK+RL
Sbjct:   243 LKEDVPRLVSSQHVDSVEKIISVVFKSLPSNFNQFIRWVAEIRITEDSNQNLSAEEKSRL 302

Query:   301 IIKEEVLKQIKETEIFEHINRWLGSEISVCQGYKQTLPEIAANVCCQGAQLLAGQLSSLD 360
              +K+ VLK++ ETE+F+HIN++L +      GY+ +L   AA  CCQGA++L+G  S   
Sbjct:   303 KLKQLVLKEVHETELFKHINKFLSTV-----GYEDSLTYAAAKACCQGAEILSGSPSK-- 355

Query:   361 ETCCKETNVVLVQAGGVSPMTLVSGKITTNGVEQGIDMLVPSSQTEPRNILCDFDRSNCK 420
             E CC+ET V  ++    S  T+V+G +  +G EQ +D+LVPS+QTE     C+      +
Sbjct:   356 EFCCRETCVKCIKGPDDSEGTVVTGVVVRDGNEQKVDLLVPSTQTE-----CE---CGPE 407

Query:   421 GMHPSTADVLTVILLALPQHTWSGIKEEKLLTQLNRCVSIENIPSLLQQEVLHLRRQLHF 480
               +P+  DV T +LLALP  TWSGIK++ L+ ++ + +S+ ++P+LLQ+EVLHLRRQL  
Sbjct:   408 ATYPAGNDVFTALLLALPPQTWSGIKDQALMHEMKQLISMASLPTLLQEEVLHLRRQLQL 467

Query:   481 L 481
             L
Sbjct:   468 L 468

GO:0009507 "chloroplast" evidence=ISM

GO:0010038 "response to metal ion" evidence=IEA

GO:0016756 "glutathione gamma-glutamylcysteinyltransferase activity" evidence=IEA;IDA;IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0046938 "phytochelatin biosynthetic process" evidence=IEA;ISS;IMP

GO:0046685 "response to arsenic-containing substance" evidence=IMP;IDA

GO:0046686 "response to cadmium ion" evidence=IMP;IDA

GO:0042344 "indole glucosinolate catabolic process" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0015446 "arsenite-transmembrane transporting ATPase activity" evidence=IDA

GO:0015700 "arsenite transport" evidence=IDA

GO:0071992 "phytochelatin transmembrane transporter activity" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0005507 "copper ion binding" evidence=IDA

GO:0046870 "cadmium ion binding" evidence=IDA

TAIR\|locus:2024172 PCS2 "phytochelatin synthase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0291187 DDB_G0291187 "glutathione gamma-glutamylcysteinyltransferase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

POMBASE\|SPAC3H1.10 pcs2 "phytochelatin synthetase" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

WB\|WBGene00003960 pcs-1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2QKL5	PCS3_LOTJA	2, ., 3, ., 2, ., 1, 5	0.6386	0.9369	0.9624	N/A	no
Q9SWW5	PCS1_WHEAT	2, ., 3, ., 2, ., 1, 5	0.5711	0.9735	0.958	N/A	no
Q9S7Z3	PCS1_ARATH	2, ., 3, ., 2, ., 1, 5	0.5774	0.9268	0.9402	yes	no
Q2TSC7	PCS1_LOTJA	2, ., 3, ., 2, ., 1, 5	0.5826	0.9735	0.9560	N/A	no
Q2TE74	PCS2_LOTJA	2, ., 3, ., 2, ., 1, 5	0.6234	0.9532	0.9730	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.2	LOW CONFIDENCE prediction!
3rd Layer	2.3.2.15	0.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		492
pfam05023		208	pfam05023, Phytochelatin, Phytochelatin synthase	1e-123
pfam09328		264	pfam09328, Phytochelatin_C, Domain of unknown func	1e-122

>gnl\|CDD\|218387 pfam05023, Phytochelatin, Phytochelatin synthase	Back alignment and domain information

 Score =  356 bits (917), Expect = e-123
 Identities = 127/212 (59%), Positives = 155/212 (73%), Gaps = 5/212 (2%)

Query: 5   YRRALPSPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAVILN 64
           YRR LPS   I F+S EGK+L  EA   GTME +F L S + TQS PA+CGLA+LA++LN
Sbjct: 1   YRRPLPSN-LIAFSSSEGKKLLLEA---GTMEDYFPLASQFVTQSNPAFCGLASLAMVLN 56

Query: 65  ALAID-PGRTWKGPWRWFDDTMLDCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRTNE 123
           AL ID PGR WKGPWRWF    LDCC PL K+K +GIT  +++CLA CNGA V+ F  ++
Sbjct: 57  ALGIDRPGRLWKGPWRWFTQDNLDCCIPLEKVKKQGITLDELSCLAKCNGAVVKTFHASD 116

Query: 124 SSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVARFK 183
            S+D+FR+H+I C + +   VI +Y R    QTG GHFSPIGGYH   D VLILDVARFK
Sbjct: 117 LSLDEFRKHLIRCLNDDGRFVIVNYDRKAIGQTGGGHFSPIGGYHEASDSVLILDVARFK 176

Query: 184 YPPHWVPLALLWEAMDTIDKATGHPRGFMIIS 215
           YPP WVPL LLWEAM+TID ++G  RGF++IS
Sbjct: 177 YPPVWVPLKLLWEAMNTIDSSSGKSRGFVLIS 208

Phytochelatin synthase is the enzyme responsible for the synthesis of heavy-metal-binding peptides (phytochelatins) from glutathione and related thiols. The crystal structure of a member of this family shows it to possess a papain fold. The enzyme catalyzes the deglycination of a GSH donor molecule. The enzyme contains a catalytic triad of cysteine, histidine and aspartate residues. Length = 208

>gnl\|CDD\|220182 pfam09328, Phytochelatin_C, Domain of unknown function (DUF1984)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		492
KOG0632		388	consensus Phytochelatin synthase [Inorganic ion tr	100.0
PF09328		264	Phytochelatin_C: Domain of unknown function (DUF19	100.0
PF05023		212	Phytochelatin: Phytochelatin synthase; InterPro: I	100.0
PF13529		144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	98.76
cd02549		141	Peptidase_C39A A sub-family of peptidase family C3	98.43
PF03412		131	Peptidase_C39: Peptidase C39 family This is family	98.13
cd02418		136	Peptidase_C39B A sub-family of peptidase family C3	97.91
cd02424		129	Peptidase_C39E A sub-family of peptidase family C3	97.85
cd02259		122	Peptidase_C39_like Peptidase family C39 mostly con	97.78
cd02420		125	Peptidase_C39D A sub-family of peptidase family C3	97.69
PF14399		317	Transpep_BrtH: NlpC/p60-like transpeptidase	97.64
cd02423		129	Peptidase_C39G A sub-family of peptidase family C3	97.56
cd02425		126	Peptidase_C39F A sub-family of peptidase family C3	97.31
TIGR03796		710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.31
cd02419		127	Peptidase_C39C A sub-family of peptidase family C3	97.14
PF11814		207	DUF3335: Peptidase_C39 like family; InterPro: IPR0	97.03
TIGR01193		708	bacteriocin_ABC ABC-type bacteriocin transporter.	96.9
PF09778		212	Guanylate_cyc_2: Guanylylate cyclase; InterPro: IP	96.36
cd02417		121	Peptidase_C39_likeA A sub-family of peptidase C39	94.28
COG2274		709	SunT ABC-type bacteriocin/lantibiotic exporters, c	93.33
cd02421		124	Peptidase_C39_likeD A sub-family of peptidase fami	92.89
TIGR03375		694	type_I_sec_LssB type I secretion system ATPase, Ls	92.88
TIGR01846		694	type_I_sec_HlyB type I secretion system ABC transp	90.72
COG3271		201	Predicted double-glycine peptidase [General functi	87.01
TIGR03797		686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	85.21

>KOG0632 consensus Phytochelatin synthase [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=2.3e-119  Score=890.77  Aligned_cols=386  Identities=54%  Similarity=1.025  Sum_probs=363.5

Q ss_pred             CCCcccccCCCCCccccCChhhHHHHHHHHhcCCcccchhchhcccccCCCCcccHHHHHHHHHhcccCCCCCcCCCccc
Q 011156            1 MAGLYRRALPSPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAVILNALAIDPGRTWKGPWRW   80 (492)
Q Consensus         1 ~~sfyrR~LP~p~~I~fsS~EGk~lf~eAl~~g~~e~ff~L~~qF~TQ~~payCGvASLaMVLNAL~idP~r~wkgpwrw   80 (492)
                      |.+||||.||. ++|+|+|.+||++|.|||+.|+||+||.|++||+||++|||||+|||+||||||.|||+|.|||||||
T Consensus         3 ~ksfYrR~Lp~-~ci~FsS~lGK~iF~eALqkGtme~yF~Lasqf~TQ~EPAfCGL~tL~mvLNsL~vDPgr~WKgpWRw   81 (388)
T KOG0632|consen    3 MKSFYRRSLPP-PCIDFSSSLGKDIFNEALQKGTMEGYFSLASQFQTQSEPAFCGLATLSMVLNSLSVDPGRKWKGPWRW   81 (388)
T ss_pred             hhhhhccCCCc-hhhhhhhHhhHHHHHHHHHhcchhHHHHHHHHHhccCCcchhhhHHHHHHHHhhccCCcccccCCchh
Confidence            57999999985 89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhcccCChhhHhhcCCCHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeecccccccCCcc
Q 011156           81 FDDTMLDCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRTNESSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGH  160 (492)
Q Consensus        81 f~E~mLd~c~~le~V~~~GiTLdEla~LA~c~G~~V~~~ra~~~sldeFR~~l~~~~ss~~~~vIVNysR~~LgQtG~GH  160 (492)
                      |||+|||||+|++.|++.||+|.+|.|||+|+|++|+++|.++.++|+||+.++.|.+++|+++|.+|+|++|||||+||
T Consensus        82 ydesMLdCC~pLe~ikk~Gisl~~fsCLA~cnglk~~~~~~s~~t~d~FRk~vv~cstsen~~mi~sy~R~VlgQTGtGH  161 (388)
T KOG0632|consen   82 YDESMLDCCEPLEDIKKKGISLGKFSCLAHCNGLKVEAFRTSQSTIDDFRKDVVKCSTSENCHMISSYHRKVLGQTGTGH  161 (388)
T ss_pred             hhhHHHhhcccHHHHHhcCcchheeehhhhcCCceeEEEecCcchHHHHHHHHHhcccccceeeehHhHHHHhcCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeecCCCeEEEEecCCCCCCCeeeehHHHHHHhhcccCcCCCceeEEEEecCCCCCcceeeeeecCCChHHHHHH
Q 011156          161 FSPIGGYHARKDLVLILDVARFKYPPHWVPLALLWEAMDTIDKATGHPRGFMIISRFHKAPSVLYTVSCRHEGWSKVAKY  240 (492)
Q Consensus       161 FSPIGGY~~~tD~VLILDVARfKYPP~WVpl~~L~eAM~tiD~~sgrsRG~ills~~~~~~~~l~~~s~~~~~w~~~~~~  240 (492)
                      ||||||||+++|++||||||||||||||||++.||+||..||.+||++||||+|++++++|+ +|+++|++++|..+++|
T Consensus       162 FSPiggy~e~~d~~LIlDVARFKYPphWV~Lkll~eam~siD~stg~pRG~~li~~~h~~~g-l~tl~lkk~sw~~i~k~  240 (388)
T KOG0632|consen  162 FSPIGGYNEERDMALILDVARFKYPPHWVPLKLLWEAMDSIDQSTGQPRGFMLISRPHREPG-LYTLSLKKESWINIAKY  240 (388)
T ss_pred             cCcccccCcccCceEEeehhhccCCCcceeHHHHHHHhcchhhccCCCccceecccCCCCCc-eEEEEeccccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHhhcccccccCCCCCHHHHHHHHHhcCcchhHHHHhhheeeeeccccCCCCCHHHHHHhhhHHHHHHHhhccchhHHHH
Q 011156          241 LTEDVPHRLKMNDVKDVENLLSLVFKSAPVDLKEFIKWVAEVRRQDVAGVSSSEEEKARLIIKEEVLKQIKETEIFEHIN  320 (492)
Q Consensus       241 ~~~~~p~l~~~~~~~~~~~v~~~~~~~~p~~~~~~i~~~~evr~~e~~~~~ls~e~~~~l~~k~~~l~qi~~t~l~~~v~  320 (492)
                      |.+|+|.            |.++.|.++|.+++.||  ++|+|+.|+..++++.||     +|+.++             
T Consensus       241 lk~~v~~------------i~~~dfas~~~s~NQf~--~~~i~~~~d~~q~~~~E~-----fk~c~r-------------  288 (388)
T KOG0632|consen  241 LKEDVPR------------IKNVDFASLPLSFNQFI--IAEIRETEDSNQNLSFEE-----FKQCIR-------------  288 (388)
T ss_pred             HHHhhhh------------hhhhHHHhcchhHHHHH--HHHHHhhcCcccccCHHH-----HHHHHH-------------
Confidence            9999987            66677999999999999  999999999999999998     454443             


Q ss_pred             HhhccccccccCCCCchHHHHHHHhhhhhhHhhcccCCCCCccccccceeeEeeCCCCCeeEEeceEeeCCcccceeeec
Q 011156          321 RWLGSEISVCQGYKQTLPEIAANVCCQGAQLLAGQLSSLDETCCKETNVVLVQAGGVSPMTLVSGKITTNGVEQGIDMLV  400 (492)
Q Consensus       321 ~~~~~~~~~~~~~~~~l~~~~~~~ccqg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~e~~~d~l~  400 (492)
                         ++     .++++   -+++..||+|+++++|.  .+..+||++||++|.|.-++...|+                  
T Consensus       289 ---st-----~~y~~---f~~h~~~c~~~e~~s~~--~~~~~~c~~~~~ac~kg~~e~~~t~------------------  337 (388)
T KOG0632|consen  289 ---ST-----VTYED---FAAHKNCCTGVEILSGA--FSAEFCCPETCVACIKGVLEEIQTV------------------  337 (388)
T ss_pred             ---hh-----hhHHh---hhhhhcccccceeecCC--cccccccHHHHHHhhhchhhhhhhe------------------
Confidence               11     12344   57899999999999997  5678999999999999855555554                  


Q ss_pred             cCCCCCcccccccCCCCCccccCCCchhHHHHHHHhcCccccCCCCchHHHHHHHhhhccCCCChhHHHHH
Q 011156          401 PSSQTEPRNILCDFDRSNCKGMHPSTADVLTVILLALPQHTWSGIKEEKLLTQLNRCVSIENIPSLLQQEV  471 (492)
Q Consensus       401 p~~~~~~~~~~~~~~~~~~~~~~p~~~dvlt~lllal~~~tw~~i~~~~l~~e~~~l~s~~~lp~~l~~ev  471 (492)
                                          ..+|+.+||.|+|||||||+||+||||..|..|+.++.+.-+.|.++|.||
T Consensus       338 --------------------~aev~~s~v~taLllAlp~q~~~~~k~dsl~~~~k~~~~~~S~~t~~~~~~  388 (388)
T KOG0632|consen  338 --------------------VAEVEGSDVFTALLLALPPQTWSGIKDDSLTHEMKQLISMCSSPTLLQTEV  388 (388)
T ss_pred             --------------------eeecccchHHHHHHHhcCcccccccccHHHHHHHHHHHhhcccHhhhhccC
Confidence                                347899999999999999999999999999999999999999999999985

>PF09328 Phytochelatin_C: Domain of unknown function (DUF1984); InterPro: IPR015407 This entry represents the C-terminal region of plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2	Back alignment and domain information

>PF05023 Phytochelatin: Phytochelatin synthase; InterPro: IPR007719 This entry represents plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2	Back alignment and domain information

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A	Back alignment and domain information

>cd02549 Peptidase_C39A A sub-family of peptidase family C39	Back alignment and domain information

>PF03412 Peptidase_C39: Peptidase C39 family This is family C39 in the peptidase classification	Back alignment and domain information

>cd02418 Peptidase_C39B A sub-family of peptidase family C39	Back alignment and domain information

>cd02424 Peptidase_C39E A sub-family of peptidase family C39	Back alignment and domain information

>cd02259 Peptidase_C39_like Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria	Back alignment and domain information

>cd02420 Peptidase_C39D A sub-family of peptidase family C39	Back alignment and domain information

>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase	Back alignment and domain information

>cd02423 Peptidase_C39G A sub-family of peptidase family C39	Back alignment and domain information

>cd02425 Peptidase_C39F A sub-family of peptidase family C39	Back alignment and domain information

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein	Back alignment and domain information

>cd02419 Peptidase_C39C A sub-family of peptidase family C39	Back alignment and domain information

>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised	Back alignment and domain information

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter	Back alignment and domain information

>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate	Back alignment and domain information

>cd02417 Peptidase_C39_likeA A sub-family of peptidase C39 which contains Cyclolysin and Hemolysin processing peptidases	Back alignment and domain information

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	Back alignment and domain information

>cd02421 Peptidase_C39_likeD A sub-family of peptidase family C39	Back alignment and domain information

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family	Back alignment and domain information

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family	Back alignment and domain information

>COG3271 Predicted double-glycine peptidase [General function prediction only]	Back alignment and domain information

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		492
2btw_B		254	Crystal Structure Of Alr0975 Length = 254		8e-30
2btw_A		254	Crystal Structure Of Alr0975 Length = 254		9e-30

>pdb|2BTW|B Chain B, Crystal Structure Of Alr0975 Length = 254

Back alignment and structure

Iteration: 1

Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 109/213 (51%), Gaps = 10/213 (4%) Query: 11 SPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAVILNALAID- 69 SP I F S EG++L L + E FF L + TQ AYCG+A++ +LN+L I+ Sbjct: 41 SPNLIGFNSNEGEKLL---LTSRSREDFFPLSXQFVTQVNQAYCGVASIIXVLNSLGINA 97 Query: 70 PGRTWKGPWRWF-DDTMLDCCKPLSKIKAE-----GITFGKVACLAYCNGAKVEAFRTNE 123 P P+R F D K + I E G T ++ L G KV+ ++ Sbjct: 98 PETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVAKQGXTLDELGRLIASYGVKVKVNHASD 157 Query: 124 SSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVARFK 183 ++I+DFR+ V + VI +Y R Q GH SP+ Y+ + D LI DV+R+K Sbjct: 158 TNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRFLIXDVSRYK 217 Query: 184 YPPHWVPLALLWEAMDTIDKATGHPRGFMIISR 216 YPP WV LW+A +T+D + RGF+ +S+ Sbjct: 218 YPPVWVKTTDLWKAXNTVDSVSQKTRGFVFVSK 250

PyMOL of 2btw

>pdb|2BTW|A Chain A, Crystal Structure Of Alr0975 Length = 254

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		492
2bu3_A		254	ALR0975 protein; phytochelatin synthase, PCS, acyl	1e-102
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B Length = 254	Back alignment and structure

 Score =  305 bits (781), Expect = e-102
 Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 10/225 (4%)

Query: 2   AGLYRRALPSPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAV 61
             L +    SP  I F S EG++L   +    + E FF L   + TQ   AYCG+A++ +
Sbjct: 32  MKLEQTLTLSPNLIGFNSNEGEKLLLTS---RSREDFFPLSMQFVTQVNQAYCGVASIIM 88

Query: 62  ILNALAID-PGRTWKGPWRWFDDTML------DCCKPLSKIKAEGITFGKVACLAYCNGA 114
           +LN+L I+ P      P+R F                   +  +G+T  ++  L    G 
Sbjct: 89  VLNSLGINAPETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYGV 148

Query: 115 KVEAFRTNESSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLV 174
           KV+    ++++I+DFR+ V      +   VI +Y R    Q   GH SP+  Y+ + D  
Sbjct: 149 KVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRF 208

Query: 175 LILDVARFKYPPHWVPLALLWEAMDTIDKATGHPRGFMIISRFHK 219
           LI+DV+R+KYPP WV    LW+AM+T+D  +   RGF+ +S+   
Sbjct: 209 LIMDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVSKTQD 253

PyMOL of 2bu3

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		492
2bu3_A		254	ALR0975 protein; phytochelatin synthase, PCS, acyl	100.0
3k8u_A		156	Putative ABC transporter, ATP-binding protein COMA	98.16
3b79_A		129	Toxin secretion ATP-binding protein; alpha-beta st	97.74
3zua_A		142	CLD, alpha-hemolysin translocation ATP-binding pro	97.66
3erv_A		236	Putative C39-like peptidase; structural genomics,	97.46

>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B	Back alignment and structure

Probab=100.00  E-value=8.2e-81  Score=609.64  Aligned_cols=215  Identities=33%  Similarity=0.613  Sum_probs=193.1

Q ss_pred             CCCcccccCCCCCccccCChhhHHHHHHHHhcCCcccchhchhcccccCCCCcccHHHHHHHHHhcccC-CCCCcCCCcc
Q 011156            1 MAGLYRRALPSPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAVILNALAID-PGRTWKGPWR   79 (492)
Q Consensus         1 ~~sfyrR~LP~p~~I~fsS~EGk~lf~eAl~~g~~e~ff~L~~qF~TQ~~payCGvASLaMVLNAL~id-P~r~wkgpwr   79 (492)
                      |++||+|+||+ ++|+|+|+||++||.+|   |+|++||+|++||+||+|++||||||++||||||++| |++.||||||
T Consensus        32 ~~~~~~~~lp~-~~i~~~S~eG~~ll~~a---~~~~~ff~L~~qf~tQ~n~ayCGlASlaMVLNALgid~P~~~wk~pwr  107 (254)
T 2bu3_A           32 MKLEQTLTLSP-NLIGFNSNEGEKLLLTS---RSREDFFPLSMQFVTQVNQAYCGVASIIMVLNSLGINAPETAQYSPYR  107 (254)
T ss_dssp             --------CCT-TCEETTSHHHHHHHHHC---SBCTTHHHHHHHCCCCSSTTCHHHHHHHHHHHHTTCCC--------CC
T ss_pred             hhhccccCCCh-hhccccCHHHHHHHHhC---CCchhhhcccccccccCCCCchHHHHHHHHHHhhCCCCCCccccCcee
Confidence            67999999995 89999999999999998   8999999999999999999999999999999999999 9999999999


Q ss_pred             cc-ccchhc-----ccCChhhHhhcCCCHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeecccc
Q 011156           80 WF-DDTMLD-----CCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRTNESSIDDFRRHVISCASSEDCHVISSYHRGVF  153 (492)
Q Consensus        80 wf-~E~mLd-----~c~~le~V~~~GiTLdEla~LA~c~G~~V~~~ra~~~sldeFR~~l~~~~ss~~~~vIVNysR~~L  153 (492)
                      || +|+||+     ||++++.|+++||||+||+|||+|+|++|++|++++.++++||+.|++++++++++|||||+|++|
T Consensus       108 ~~Tqe~mld~~~~~~~~~~~~v~~~GiTL~el~~La~c~G~~v~~y~a~~~sl~~fR~~v~~~~~~~~~~vvvny~R~~l  187 (254)
T 2bu3_A          108 VFTQDNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKEI  187 (254)
T ss_dssp             CCCTTTTTC---CTTTSCHHHHHHHCCCHHHHHHHHHTTTCEEEEEEGGGSCHHHHHHHHHHHHTCTTEEEEEEEEGGGG
T ss_pred             eechHhHhcccccccccChhhhccCCcCHHHHHHHHHhCCceEEEEECCcCcHHHHHHHHHHHhCCCCcEEEEEeEcccc
Confidence            99 789998     999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCccccccceeecCCCeEEEEecCCCCCCCeeeehHHHHHHhhcccCcCCCceeEEEEecCCC
Q 011156          154 KQTGSGHFSPIGGYHARKDLVLILDVARFKYPPHWVPLALLWEAMDTIDKATGHPRGFMIISRFHK  219 (492)
Q Consensus       154 gQtG~GHFSPIGGY~~~tD~VLILDVARfKYPP~WVpl~~L~eAM~tiD~~sgrsRG~ills~~~~  219 (492)
                      +|+|+||||||||||+++|+||||||||||||||||++++||+||+++|++|||+||||+|++.++
T Consensus       188 ~q~G~GHfSPIggY~~~~D~vLIlDVar~kYpp~WV~~~~L~~Am~~~D~~s~~~RG~~li~~~~~  253 (254)
T 2bu3_A          188 GQERGGHISPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVSKTQD  253 (254)
T ss_dssp             TCSSSEEEEEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHHSSEETTTTEECEEEEEEC---
T ss_pred             CCCCCCceeceeeEcCCCCeEEEEecCccCCCCEeeeHHHHHHHHhcccccCCCcceEEEEecccC
Confidence            999999999999999999999999999999999999999999999999999999999999998763

PyMOL of 2bu3

>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}	Back alignment and structure

>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}	Back alignment and structure

>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}	Back alignment and structure

>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		492
d2bu3a1		210	d.3.1.14 (A:29-238) Primitive phytochelatin syntha	1e-103

>d2bu3a1 d.3.1.14 (A:29-238) Primitive phytochelatin synthase {Nostoc sp. pcc 7120 [TaxId: 103690]} Length = 210	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Phytochelatin synthase
domain: Primitive phytochelatin synthase
species: Nostoc sp. pcc 7120 [TaxId: 103690]

 Score =  304 bits (781), Expect = e-103
 Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 10/212 (4%)

Query: 11  SPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAVILNALAID- 69
           SP  I F S EG++L   +    + E FF L   + TQ   AYCG+A++ ++LN+L I+ 
Sbjct: 2   SPNLIGFNSNEGEKLLLTS---RSREDFFPLSMQFVTQVNQAYCGVASIIMVLNSLGINA 58

Query: 70  PGRTWKGPWRWFDDTML------DCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRTNE 123
           P      P+R F                   +  +G+T  ++  L    G KV+    ++
Sbjct: 59  PETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASD 118

Query: 124 SSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHFSPIGGYHARKDLVLILDVARFK 183
           ++I+DFR+ V      +   VI +Y R    Q   GH SP+  Y+ + D  LI+DV+R+K
Sbjct: 119 TNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRFLIMDVSRYK 178

Query: 184 YPPHWVPLALLWEAMDTIDKATGHPRGFMIIS 215
           YPP WV    LW+AM+T+D  +   RGF+ +S
Sbjct: 179 YPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVS 210

PyMOL of d2bu3a1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		492
d2bu3a1		210	Primitive phytochelatin synthase {Nostoc sp. pcc 7	100.0

>d2bu3a1 d.3.1.14 (A:29-238) Primitive phytochelatin synthase {Nostoc sp. pcc 7120 [TaxId: 103690]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Phytochelatin synthase
domain: Primitive phytochelatin synthase
species: Nostoc sp. pcc 7120 [TaxId: 103690]

Probab=100.00  E-value=3.3e-77  Score=568.30  Aligned_cols=203  Identities=34%  Similarity=0.642  Sum_probs=190.2

Q ss_pred             CCCCCccccCChhhHHHHHHHHhcCCcccchhchhcccccCCCCcccHHHHHHHHHhcccC-CCCCcCCCccccccchh-
Q 011156            9 LPSPPAIEFASPEGKQLFTEALGEGTMEGFFKLISYYQTQSEPAYCGLATLAVILNALAID-PGRTWKGPWRWFDDTML-   86 (492)
Q Consensus         9 LP~p~~I~fsS~EGk~lf~eAl~~g~~e~ff~L~~qF~TQ~~payCGvASLaMVLNAL~id-P~r~wkgpwrwf~E~mL-   86 (492)
                      ||. ++|+|+|+|||+||.+|   |+|++||+|++||+||+||+||||||++||||||+|| |.+.|++|||||+|+++ 
T Consensus         1 lp~-~~i~~~S~eG~~ll~~~---~~~~~~~~L~~~f~tQ~~~ayCG~ASl~mvLNaL~id~P~~~~~~p~~~~tq~~l~   76 (210)
T d2bu3a1           1 LSP-NLIGFNSNEGEKLLLTS---RSREDFFPLSMQFVTQVNQAYCGVASIIMVLNSLGINAPETAQYSPYRVFTQDNFF   76 (210)
T ss_dssp             CCT-TCEETTSHHHHHHHHHC---SBCTTHHHHHHHCCCCSSTTCHHHHHHHHHHHHTTCCC--------CCCCCTTTTT
T ss_pred             CCc-ccccccCHHHHHHHHhC---ccchhHHHHHHHHhhccCCCeeHHHHHHHHHHhcCCCCCCccccCccccccccccc
Confidence            686 89999999999999885   8999999999999999999999999999999999999 99999999999999888 


Q ss_pred             -----cccCChhhHhhcCCCHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeecccccccCCccc
Q 011156           87 -----DCCKPLSKIKAEGITFGKVACLAYCNGAKVEAFRTNESSIDDFRRHVISCASSEDCHVISSYHRGVFKQTGSGHF  161 (492)
Q Consensus        87 -----d~c~~le~V~~~GiTLdEla~LA~c~G~~V~~~ra~~~sldeFR~~l~~~~ss~~~~vIVNysR~~LgQtG~GHF  161 (492)
                           +||.+.+.++++||||+||+|+|+|+|++|+++|+++.++++||++|++++++++++|||||+|++++|+|+|||
T Consensus        77 ~~~~~~~~~~~~~v~~~G~Tl~el~~la~~~g~~v~~~~~~~~s~d~FR~~v~~~~~~~~~~vivny~r~~l~q~G~GHf  156 (210)
T d2bu3a1          77 SNEKTKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHI  156 (210)
T ss_dssp             C---CTTTSCHHHHHHHCCCHHHHHHHHHTTTCEEEEEEGGGSCHHHHHHHHHHHHTCTTEEEEEEEEGGGGTCSSSEEE
T ss_pred             cchhhhhccCHHHHHHcCCcHHHHHHHHHhCCCeeEEEeCCcccHHHHHHHHHHHhCCCCCEEEEEecCcccCcCCCcce
Confidence                 688999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeecCCCeEEEEecCCCCCCCeeeehHHHHHHhhcccCcCCCceeEEEEe
Q 011156          162 SPIGGYHARKDLVLILDVARFKYPPHWVPLALLWEAMDTIDKATGHPRGFMIIS  215 (492)
Q Consensus       162 SPIGGY~~~tD~VLILDVARfKYPP~WVpl~~L~eAM~tiD~~sgrsRG~ills  215 (492)
                      |||||||+++|+|||||||||||||||||+++||+||+++|++||++||||+||
T Consensus       157 SPI~gY~~~~d~vlilDvar~kypp~Wv~~~~L~~am~t~D~~t~~~RG~i~is  210 (210)
T d2bu3a1         157 SPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVS  210 (210)
T ss_dssp             EEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHHSSEETTTTEECEEEEEE
T ss_pred             eeEEEEcCCCCEEEEEecCcccCCCeEeEHHHHHHHHhccccCCCCcceEEEeC
Confidence            999999999999999999999999999999999999999999999999999996

PyMOL of d2bu3a1