Citrus Sinensis ID: 011161

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--
Protein Sequence
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVTPDCN
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEEEEccccccccccccccEEEEEEccEEEEEcccccccccccccEEEEEEEccccEEEEEEEEcccccccccccEEEEEcccccccccEEEEcccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcHHHHHHccccccEEEEccEEEEEEEccccEEEEEEcccccEEEEcccccccccEEEEEEEcccccccccccccccccccEEEEEEEccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEEEEccccccccccccEEEEEEEEEEccccccEEEEEEEEEcccccccEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEcEEEHHEEHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEccccccEEEEEEEEEEccccccccccccccEEEEEEcccEEEEEEEEcccccccccEEEEEccccccEEEEEEEccccccccccEEEEEEEcccHcccccEEEcccccccccEEEEEEEEEccccccccccHcccccHcHcccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHcccccEEEEcHHHEEEEHHHcccEEEEEEEHHcHHHEEEcccccEcccEEEEEEcccccccccccccccccEEEEEEcHccHHHHHHHHHHHHHHccccHHHHHHHHHcHcccccccccccccEEccccccccccccccccccEEEEEEEEEEccccccccccccEEEEEEEEEcccccccccccEEEEEEEEEEcccccEEEEEEEEEccccccccEEEEEEEEEEEEcccccccEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvqfkgdpqtnSAYLIKLELLAAKNLiganlngtsdpyaiitcgsekrfssmvpgsrypmwgeefnfsvdelpvQIIVTIYDWDIIWKSTVLGSVIVTVesegqtgavwytldspsgqvclhiktiklpvnasrvmngyAGANARRrasldkqgptvvhqkpgplqtiFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKviipigdideiqrsqhafinPAITIILRmgagghgvpplgspdgrvryKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAhsssiggsrrQAKIVEEtvtkpekrqpfikeEVLVGIYNmgqwhaadeydgQVREVAFRSLckspiyprdtamtesqhavlspdkkIFVFETVqqahdvpfgsyfeihgRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICtsggetnnqsstpsvtpdcn
Flexible Loop (DISEMBL)
mvqfkgdpqtnSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRahsssiggsrrqakiveetvtkpekrqpfikEEVLVGIYNMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFkiktgavnkyKKEVELMLETARSYIKICTsggetnnqsstpsvtpdcn
Low Complexity Region (SEG)
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMngyaganarrraSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLeaekkekaesaLRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVTPDCN
Disordered region (IsUnstruct)
************AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGA********************GPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRT*************************************************FIKEEVLVGIYNMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICT*******************
Disordered Region (DISOPRED)
*************YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGA***************RYKFASFWNRNHALRQLQRT*********************************AKIVEETVTKPEKRQPFIKEEVLVGIYNMGQWHAADEYDGQVREVAFRSL*************ES*HAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET****************************
Disordered Region (DISEMBL)
********QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAE***********************KIVEETVTKPEKRQPFIKEEVLVGIYNMGQWHAADEYDGQVREVAFRSLCKSPIYPRDT*********LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSG*****************
Disordered Region (DISPRO)
*****G**QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGA*G*********DGRVRYKFASFWNRNHALRQLQRTAKNYHTM***********************RRQAKIVEETVTKPEKRQPFIKEEVLVGIYNMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKI*********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHAxxxxxxxxxxxxxxxxxxxxxKAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVTPDCN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	492	2.2.26 [Sep-21-2011]
Q9ZVT9	1020	C2 and GRAM domain-contai	no	no	0.817	0.394	0.233	2e-18
Q9FGS8	1027	C2 and GRAM domain-contai	no	no	0.863	0.413	0.206	2e-17
O42976	764	Uncharacterized membrane	yes	no	0.247	0.159	0.283	8e-11
Q5M7N9	889	Extended synaptotagmin-3	yes	no	0.256	0.141	0.313	6e-09
O43374	803	Ras GTPase-activating pro	yes	no	0.178	0.109	0.325	1e-08
C9J798	803	Putative Ras GTPase-activ	yes	no	0.178	0.109	0.325	1e-08
Q6PFQ7	802	Ras GTPase-activating pro	no	no	0.203	0.124	0.291	2e-07
Q55A55	986	Probable serine/threonine	no	no	0.219	0.109	0.305	4e-07
Q9UPW8	1703	Protein unc-13 homolog A	no	no	0.219	0.063	0.296	5e-07
Q3V3G7	320	GRAM domain-containing pr	no	no	0.203	0.312	0.278	5e-07

>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4

 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 183/453 (40%), Gaps = 51/453 (11%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
            +L+ + L+   +L   + +G  DPY + T   + R SS+      P W E F F     
Sbjct: 534 GWLLTVALIEGVDLAAVDPSGHCDPYIVFTSNGKTRTSSIKFQKSNPQWNEIFEFDAMAD 593

Query: 73  PVQII-VTIYDWDIIWKSTV-LGSVIVT-VESE-GQTGAVWYTLDSPSGQVC---LHIKT 125
           P  ++ V ++D+D  +   V LG   V  V S       VW  L     Q C   LH++ 
Sbjct: 594 PPSVLNVEVFDFDGPFDEAVSLGHAEVNFVRSNISDLADVWVPLQGKLAQACQSKLHLRI 653

Query: 126 IKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVI 185
                    V+  Y     +    + K+      Q     Q +F L  +EF+   ++C +
Sbjct: 654 FLDHTGGGDVVRDYLN---KMEKEVGKKINVRSPQTNSAFQKLFGLPQEEFLINDFTCHL 710

Query: 186 ERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQ---RSQHAFINPAITIIL- 241
           +R     GR+++SA  + F+++ F  + K      DI+EIQ    +  +  +P + + L 
Sbjct: 711 KRKMPLQGRLFLSARIVGFYASIFGNKTKFFFLWEDIEEIQVLPPTLASMGSPIVVMTLR 770

Query: 242 -------RMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKK- 293
                  R+GA  H        +GR+++ F SF + N A + +    K     L  E+K 
Sbjct: 771 PNRGLDARIGAKTH------DEEGRLKFHFHSFVSFNVAQKTIMALWK--AKSLTPEQKV 822

Query: 294 ----EKAESALRAHSSSIGGSRRQAKIVEE-TVTKPEKRQPFIK------------EEVL 336
               E++E  L++  S +       +  E  ++T P     F++            E   
Sbjct: 823 QAVEEESEQKLQSEESGLFLGVDDVRFSEVFSLTLPVPVSFFMELFGGGEVDRKAMERAG 882

Query: 337 VGIYNMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQ 396
              Y+   W +  + D   R+  +R      I      +T +Q   L P+K  ++ E V 
Sbjct: 883 CQSYSCSPWESEKD-DVYERQTYYRD---KRISRYRGEVTSTQQKSLVPEKNGWLVEEVM 938

Query: 397 QAHDVPFGSYFEIHGRWHLETIAENSSTIDIKV 429
             H VP G YF +H R+ +E       T  ++V
Sbjct: 939 TLHGVPLGDYFNLHLRYQMEESTSKPKTTYVRV 971

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170 OS=Arabidopsis thaliana GN=At5g50170 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 107/517 (20%), Positives = 201/517 (38%), Gaps = 92/517 (17%)

Query: 5    KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEE 64
            +G       +++ + L+   NL         DPY + TC  + R SS+   ++ P W E 
Sbjct: 530  QGVKANGKGWILTIALIKGTNLASVEATELFDPYVVFTCNGKTRTSSVKLQAQDPQWNEV 589

Query: 65   FNFSVDELPVQII-VTIYDWDIIW-KSTVLGSVIV-----TVESEGQTGAVWYTLDSPSG 117
              F   E P  ++ V ++D+D  + +   LG   +     T +             + + 
Sbjct: 590  IEFDAMEEPPSVLDVEVFDFDGPFDQGASLGHAEINFLKHTADELADLSVALVGNHAQAS 649

Query: 118  QVCLHIKTIKLPVNASRVMNGYAGANARRRAS-LDKQGPTVVHQKPGPLQTIFNLLPDEF 176
            Q  L ++      N    M  Y     +     L+ + P    QK    Q +F L  +EF
Sbjct: 650  QSKLQLRIFLENKNGVETMKDYLSKVEKEVGKKLNIRSP----QKNSAFQKLFGLPHEEF 705

Query: 177  VELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI--- 233
            +   Y+C ++R     G++++SA  + F+SN F  + K      DID+IQ     F    
Sbjct: 706  LLKEYTCYLKRKLPVQGKLFLSARIVAFYSNVFGHKTKFYFLWEDIDDIQVLPPTFASLG 765

Query: 234  NPAITIILRMGAG---GHGVPPLGSPDGRVRYKFASFWNRN------HALRQLQRTAKNY 284
            +P + IIL+   G    HG       +GR+ + F SF + +       AL + +  + ++
Sbjct: 766  SPLLLIILKKNRGLDAKHGAKS-QDDEGRLSFYFQSFVSFDATSRTIMALWKTRTLSVDH 824

Query: 285  HTMLEAEKKEKAESALRAHSSSI----------------------------GGSRRQAKI 316
               +  E ++ A+  L   + ++                            GG   + KI
Sbjct: 825  RAQIVEEDQDVADPFLLPEAVTVVSDADALMMSKVYTCDLPCDVELVMKIFGGGELERKI 884

Query: 317  VEET------VTKPEKRQPFIKEEVLVGIYNMGQWHAADEYDGQVREVAFRSLCKSPIYP 370
            +E++       T  E ++P + E  L   YN    H    + G V               
Sbjct: 885  MEKSGCLSYASTTWESKKPGVYERRLSYKYN----HYVSVFGGGV--------------- 925

Query: 371  RDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVV 430
                 T +Q    +P+ + ++   +   HDVPFG +F +H R+ ++      + +D K  
Sbjct: 926  -----TCAQQKSPAPNDEGWILNEIVALHDVPFGDHFRVHIRYEVK-----KAGVDCKTS 975

Query: 431  SAGAHFK-KWC-VIQF--KIKTGAVNKYKKEVELMLE 463
                + K +W   I+F  +I    + K++   +++ +
Sbjct: 976  KCEVYLKIRWLKTIKFEQRISKSIMEKFRNRFKVIFD 1012

Arabidopsis thaliana (taxid: 3702)

>sp|O42976|YGZ7_SCHPO Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC20F10.07 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 33/155 (21%)

Query: 136 MNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLP--DEFVELSYSCVIERSFLYHG 193
           ++GYA AN++R     +               IF +LP  D  ++  Y C ++R    HG
Sbjct: 185 LSGYAFANSKRNRDFHR---------------IFKVLPPEDHLID-DYGCALQRDIFLHG 228

Query: 194 RMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPL 253
           RMY+S  HICF+S+ F     ++IP+ +I  +++   A + P    I  + A        
Sbjct: 229 RMYLSESHICFNSSIFGWVTNIVIPVTEIVSVEKKSTAVVFPNAIQITTLHA-------- 280

Query: 254 GSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTML 288
                  RY FASF +R+   + +    KN H  L
Sbjct: 281 -------RYIFASFISRDTTYQLIIAIWKNTHPFL 308

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 11/137 (8%)

Query: 15  LIKLELLAAKNLIGAN------LNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS 68
           +++L L+ A++LI  +      + G SDPYA++  G++   S  +  +  P WGE + F 
Sbjct: 349 VLRLHLIEAEDLIPKDNYLKGIIRGKSDPYAVLRIGNQNFKSRTIKENLNPKWGEMYEFV 408

Query: 69  VDELPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL-DSPSGQVCLHIK 124
           V E+P Q + V +YD D   K   LGS+++ +E   Q   V  W+ L D PSG V L ++
Sbjct: 409 VHEVPGQDLEVDLYDEDPD-KDDFLGSLVIGLEGVMQDRVVDEWFPLSDVPSGSVHLRLE 467

Query: 125 TIKLPVNASRVMNGYAG 141
            + L   + ++     G
Sbjct: 468 WLSLLPKSEKLSEAKGG 484

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus tropicalis (taxid: 8364)

>sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2

 Score = 62.0 bits (149), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NGTSDP+  +      R +S+V  S YP W E F F + E 
Sbjct: 132 ACRLRCSVLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKKSCYPRWNETFEFELQEG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE 100
            ++ + V  +DWD++ ++  LG V++ V+
Sbjct: 192 AMEALCVEAWDWDLVSRNDFLGKVVIDVQ 220

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis.

Homo sapiens (taxid: 9606)

>sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2

 Score = 61.6 bits (148), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NGTSDP+  +      R +S+V  S YP W E F F + E 
Sbjct: 132 ACRLRCSVLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKKSCYPRWNETFEFELQEG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE 100
            ++ + V  +DWD++ ++  LG V++ V+
Sbjct: 192 AMEALCVEAWDWDLVSRNDFLGKVVIDVQ 220

Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway.

Homo sapiens (taxid: 9606)

>sp|Q6PFQ7|RASL2_MOUSE Ras GTPase-activating protein 4 OS=Mus musculus GN=Rasa4 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NG SDP+  +      + +S+V  S YP W E F+F +++ 
Sbjct: 132 ASRLRCAVLEARDLAPKDRNGASDPFVRVHYNGRTQETSVVKKSCYPRWNETFDFELEKG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTL 112
             + ++V  +DWD++ ++  LG V V V+     Q    W+ L
Sbjct: 192 ASEALLVEAWDWDLVSRNDFLGKVAVNVQRLCSAQQEEGWFRL 234

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Isoform 2 activates the Ras pathway and promotes RANKL shedding by modulating the expression of MMP14.

Mus musculus (taxid: 10090)

>sp|Q55A55|Y9848_DICDI Probable serine/threonine-protein kinase DDB_G0272092 OS=Dictyostelium discoideum GN=DDB_G0272092 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 13/121 (10%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEE--FNFSVDELP 73
           +++E+L  +NL+  + NG SDPY ++  G +K+ +  +  + +P W  +  F F +D   
Sbjct: 8   VRIEVLEGRNLVPMDSNGMSDPYGVVIVGDKKKKTKAIKHTLFPKWESDNCFEFDIDVNL 67

Query: 74  VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV----WYTL------DSPSGQVCLHI 123
           + I V +YDWD       +G   + V S+ Q   V    WYTL      D  SG++ L I
Sbjct: 68  LAITVEVYDWDRFSSDDRMGLTNIPV-SQIQEYIVDTTKWYTLQPMKPNDKVSGEIKLKI 126

Query: 124 K 124
           +
Sbjct: 127 R 127

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9UPW8|UN13A_HUMAN Protein unc-13 homolog A OS=Homo sapiens GN=UNC13A PE=2 SV=4

 Score = 56.2 bits (134), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 678 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 737

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 738 IKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 797

Query: 119 VCLHI 123
           + LHI
Sbjct: 798 IRLHI 802

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses (By similarity). Also involved in secretory granule priming in insulin secretion (By similarity). Interacts with FBXO45 (via SRY domain); leading to the degradation of UNC13A by the proteasome.

Homo sapiens (taxid: 9606)

>sp|Q3V3G7|GRAM2_MOUSE GRAM domain-containing protein 2 OS=Mus musculus GN=Gramd2 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 15/115 (13%)

Query: 168 IFNLLPDEFVELSY-SCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQ 226
           +F  +P E V L   SC ++R  L HGR+Y+S   +CFH++ F + +KV+IP+  +  I+
Sbjct: 79  LFKDIPLEEVVLKVCSCALQRDLLLHGRLYISPNWLCFHASLFGKDIKVVIPVVSVQLIK 138

Query: 227 RSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTA 281
           + + A          R+   G  +    + +   +Y F S  +R+     L+R  
Sbjct: 139 KHKMA----------RLLPNGLAI----TTNTSQKYVFVSLLSRDSVYDMLRRVC 179

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
224121784	590	predicted protein [Populus trichocarpa]	0.989	0.825	0.754	0.0
359478193	588	PREDICTED: C2 and GRAM domain-containing	0.979	0.819	0.744	0.0
356519666	585	PREDICTED: C2 and GRAM domain-containing	0.983	0.827	0.729	0.0
356500100	584	PREDICTED: C2 and GRAM domain-containing	0.977	0.823	0.729	0.0
357475565	582	GRAM domain-containing protein [Medicago	0.979	0.828	0.706	0.0
449468844	598	PREDICTED: C2 and GRAM domain-containing	0.969	0.797	0.699	0.0
449484724	598	PREDICTED: LOW QUALITY PROTEIN: C2 and G	0.969	0.797	0.699	0.0
22331873	594	C2 domain and GRAM domain-containing pro	0.943	0.781	0.696	0.0
255582207	532	conserved hypothetical protein [Ricinus	0.823	0.761	0.794	0.0
297820804	586	C2 domain-containing protein [Arabidopsi	0.908	0.762	0.702	0.0

>gi|224121784|ref|XP_002330652.1| predicted protein [Populus trichocarpa] gi|222872256|gb|EEF09387.1| predicted protein [Populus trichocarpa]

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/526 (75%), Positives = 426/526 (80%), Gaps = 39/526 (7%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGD Q NSAY+IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR PM
Sbjct: 66  MGQLKGDSQANSAYIIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRNPM 125

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGA WYTLDSPSGQVC
Sbjct: 126 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAEWYTLDSPSGQVC 185

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIK+P N++R +NGYAGAN RRR S DKQGPTVVHQKPGPLQTIF+LLPDE VE S
Sbjct: 186 LHIKTIKVPANSARAVNGYAGANPRRRISSDKQGPTVVHQKPGPLQTIFSLLPDEVVEHS 245

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240
           YSC +ERSFLYHGRMYVSAW+ICFHSN FS+QMKV+IP GDIDEI+RSQHAFINPA+TII
Sbjct: 246 YSCALERSFLYHGRMYVSAWNICFHSNVFSKQMKVVIPFGDIDEIRRSQHAFINPAVTII 305

Query: 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AKNY TMLEAEKKE+AESAL
Sbjct: 306 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRGLQRAAKNYRTMLEAEKKERAESAL 365

Query: 301 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN------------------- 341
           RAHSSSI    RQA I E+ V K  K Q FIKEEVLVGIYN                   
Sbjct: 366 RAHSSSIRSGTRQANIPEDVVQKAGKLQAFIKEEVLVGIYNDLFPCTAEQFFNICLKDGS 425

Query: 342 ----------------MGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP 385
                           MGQWHAADEYDGQVRE+ FRSLC SP+ P DTA+TE QH VLSP
Sbjct: 426 TFINEYRSVRKDSNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAVTEWQHFVLSP 485

Query: 386 DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFK 445
           DKK  VFETVQQ HDVPFGSYFEIH RW LET  ENS  +DIK   AGAHFKKWCV+Q K
Sbjct: 486 DKKKLVFETVQQPHDVPFGSYFEIHCRWSLETNGENSCAMDIK---AGAHFKKWCVMQSK 542

Query: 446 IKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQ-SSTPSVTPD 490
           I++GA+N+YKKEV+LMLE AR+  K   S GET ++ SS+P +T D
Sbjct: 543 IRSGAINEYKKEVDLMLEMARASAKSHMSSGETTDKSSSSPIITQD 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478193|ref|XP_002273984.2| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Vitis vinifera] gi|296084286|emb|CBI24674.3| unnamed protein product [Vitis vinifera]

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/521 (74%), Positives = 427/521 (81%), Gaps = 39/521 (7%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGDPQTNSAY+IKLELLAAKNLIGANLNG SDPYAIITCG EKRFSSMVPGSR PM
Sbjct: 65  MGQLKGDPQTNSAYVIKLELLAAKNLIGANLNGMSDPYAIITCGEEKRFSSMVPGSRNPM 124

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVD+LPV+I VTIYDWDIIWKST+LGSV V VE+EGQTGAVWY+LDS SGQVC
Sbjct: 125 WGEEFNFSVDDLPVKINVTIYDWDIIWKSTILGSVTVPVETEGQTGAVWYSLDSTSGQVC 184

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIKLPVN+SRV+NGY+GAN RRR S DKQGPT+VHQKPGPLQTIFNL PDE VE S
Sbjct: 185 LHIKTIKLPVNSSRVLNGYSGANTRRRMSSDKQGPTLVHQKPGPLQTIFNLHPDEVVEHS 244

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240
           YSC +ERSFLYHGRMYVS WHICFHSN FS+QMKVIIP  DIDEI+RSQHAFINPAITII
Sbjct: 245 YSCALERSFLYHGRMYVSGWHICFHSNVFSKQMKVIIPFQDIDEIKRSQHAFINPAITII 304

Query: 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AKN+HTMLEAEKKE AES L
Sbjct: 305 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRTLQRFAKNFHTMLEAEKKENAESEL 364

Query: 301 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN------------------- 341
           RAHSSSI G R QAKI E+++    + QPF+KEE L+ IYN                   
Sbjct: 365 RAHSSSIKG-RSQAKISEDSLPTAIEFQPFVKEEALISIYNDAFPCTAEQFFNILLHDDS 423

Query: 342 ----------------MGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP 385
                           +GQWHA DEYDGQVRE+ FRSLC SP+ P DTAMTE QHAV+SP
Sbjct: 424 NYINEYRLARKDANLVVGQWHATDEYDGQVREITFRSLCTSPMCPPDTAMTEYQHAVVSP 483

Query: 386 DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFK 445
           DKK+ VFETVQQAHDVPFGS+FE+H +W LET +E+S T++IK   AGAHFKKWCV+Q K
Sbjct: 484 DKKVLVFETVQQAHDVPFGSHFEVHCKWRLETNSESSCTMEIK---AGAHFKKWCVMQSK 540

Query: 446 IKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPS 486
           I++GA+N+YKKEVE MLE ARSYIK  TSGGE  +  S+ S
Sbjct: 541 IRSGAINEYKKEVETMLEVARSYIKSKTSGGEIEDAPSSSS 581

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519666|ref|XP_003528491.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max]

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/524 (72%), Positives = 414/524 (79%), Gaps = 40/524 (7%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q K D Q + AYLIKLELLAAKNL+GANLNGTSDPYAIITCG+EKRFSSMVPGSR PM
Sbjct: 63  MGQSKVDSQASLAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPM 122

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVC
Sbjct: 123 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVC 182

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRAS-LDKQGPTVVHQKPGPLQTIFNLLPDEFVEL 179
           LHIKTIKL  NASR+ NGY GAN RRR   L+ QGPTVVHQKPGPLQTIF L PDE V+ 
Sbjct: 183 LHIKTIKLSGNASRI-NGYGGANPRRRMPPLESQGPTVVHQKPGPLQTIFGLHPDEVVDH 241

Query: 180 SYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITI 239
           SYSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKV+IP  DIDEI+RSQHAFINPAITI
Sbjct: 242 SYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITI 301

Query: 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESA 299
           ILRMGAGGHGVPPLGSPDGRVRY FASFWNRNHALR LQR AKN+H MLEAEKKE AES 
Sbjct: 302 ILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHALRNLQRAAKNFHEMLEAEKKENAESE 361

Query: 300 LRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN------------------ 341
           LRAHSSS+ G++   K  EE++ K  + QPF+KEE LVGIYN                  
Sbjct: 362 LRAHSSSVRGNKILDKAPEESMPKTGRLQPFVKEEALVGIYNEVFPCTAEQFFNLLLNDG 421

Query: 342 -----------------MGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 384
                            MGQWH ADEYDGQVRE+ FRSLC SP+ P DTAMTE QH VLS
Sbjct: 422 SNFTSKYRSVRKDTNLVMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLS 481

Query: 385 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQF 444
            DKK  VFETVQQAHDVPFGSYFE+H +W LETI E S T+DIKV   GAHFKKWCV+Q 
Sbjct: 482 LDKKNLVFETVQQAHDVPFGSYFEVHCKWSLETINEISCTLDIKV---GAHFKKWCVMQS 538

Query: 445 KIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVT 488
           KIK+GAVN+YKKEV++ML+ ARSYIK  T   E +  SS P+ T
Sbjct: 539 KIKSGAVNEYKKEVDVMLDVARSYIKSNTPNDEDDKASSPPAAT 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500100|ref|XP_003518872.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max]

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/521 (72%), Positives = 412/521 (79%), Gaps = 40/521 (7%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q K D Q +SAYLIKLELLAAKNL+GANLNGTSDPYAIITCG+EKRFSSMVPGSR PM
Sbjct: 61  MGQSKVDSQASSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPM 120

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVC
Sbjct: 121 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVC 180

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRAS-LDKQGPTVVHQKPGPLQTIFNLLPDEFVEL 179
           L IKTIKL  NASR+ NGY GAN RRR   L++Q PTVVHQKPGPLQTIF+L PDE V+ 
Sbjct: 181 LLIKTIKLSGNASRI-NGYGGANPRRRMPPLERQWPTVVHQKPGPLQTIFDLHPDEVVDH 239

Query: 180 SYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITI 239
           SYSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKV+IP  DIDEI+RSQHAFINPAITI
Sbjct: 240 SYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITI 299

Query: 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESA 299
           ILRMGAGGHGVPPLGSPDGRVRY FASFWNRNHA R LQR AKN+H MLEAEKKE AES 
Sbjct: 300 ILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAFRNLQRAAKNFHEMLEAEKKENAESE 359

Query: 300 LRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN------------------ 341
           LRAHSSS+ G++   K  EE++ K  K QPF+KEE LVGIYN                  
Sbjct: 360 LRAHSSSVRGNKILDKAPEESMPKTGKLQPFVKEEALVGIYNEVFPCTAEQFFNLLLNDG 419

Query: 342 -----------------MGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 384
                            MGQWH ADEYDGQVRE+ FRSLC SP+ P DTAMTE QH VLS
Sbjct: 420 SNFTSKYRSVRKDTNLLMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLS 479

Query: 385 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQF 444
           PDK   VFETVQQAHDVPFGSYFE+H +W LETI E S T+DIKV   GAHFKKWCV+Q 
Sbjct: 480 PDKTNLVFETVQQAHDVPFGSYFEVHCKWSLETINETSCTLDIKV---GAHFKKWCVMQS 536

Query: 445 KIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTP 485
           KIK+GAVN+YKKEV++ML+ ARSYIK  T   E +  SS P
Sbjct: 537 KIKSGAVNEYKKEVDVMLDVARSYIKSNTPNDEDDKASSPP 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475565|ref|XP_003608068.1| GRAM domain-containing protein [Medicago truncatula] gi|355509123|gb|AES90265.1| GRAM domain-containing protein [Medicago truncatula]

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/521 (70%), Positives = 405/521 (77%), Gaps = 39/521 (7%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
           Q +GD Q  SAYLIKLELLAAKNLI ANLNGTSDPY IITCG+EKRFSSMVPGSR PMWG
Sbjct: 63  QSRGDSQAGSAYLIKLELLAAKNLIAANLNGTSDPYTIITCGNEKRFSSMVPGSRNPMWG 122

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVCLH
Sbjct: 123 EEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLH 182

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           IKT K+  N++R+ NGY GAN RRR  L+KQ PTVVHQKPGPLQTIF L PDE V+ SYS
Sbjct: 183 IKTEKMSANSARI-NGYGGANTRRRIPLEKQEPTVVHQKPGPLQTIFELHPDEVVDHSYS 241

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR 242
           C +ERSFLYHGRMYVS WHICFHSN FS+QMKV+IP  DIDEI+RSQHAFINPAITIILR
Sbjct: 242 CALERSFLYHGRMYVSTWHICFHSNVFSKQMKVLIPFEDIDEIRRSQHAFINPAITIILR 301

Query: 243 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRA 302
           MGAGGHGVPPLGSPDGRVRYKFASFWNRNHA+R LQR  KN+  MLE EKKE AES LRA
Sbjct: 302 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHAVRSLQRAVKNFREMLETEKKENAESELRA 361

Query: 303 HSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN--------------------- 341
           HSSS+  S    K+ E ++ K  KRQ FIKEE LVGIYN                     
Sbjct: 362 HSSSVRRSNIMDKVPETSMPKAGKRQTFIKEEALVGIYNDVFPCTAEQFFNLLLKDDSKF 421

Query: 342 --------------MGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDK 387
                         MGQWH A+EYDGQVRE+ FRSLC SP+ P DTA+TE QH VLS DK
Sbjct: 422 TSKYRSARKDTNLVMGQWHTAEEYDGQVREITFRSLCNSPMCPPDTAITEWQHVVLSSDK 481

Query: 388 KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIK 447
           K  VFETVQQAHDVP GS FE+H +W LET  E+S T+DI+V   GAHFKKWCV+Q KIK
Sbjct: 482 KNLVFETVQQAHDVPLGSCFEVHCKWGLETTGESSCTLDIRV---GAHFKKWCVMQSKIK 538

Query: 448 TGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVT 488
           +GA+N+YKKEV++ML+ ARSYIK  TS  E +  SS P+ T
Sbjct: 539 SGAINEYKKEVDVMLDVARSYIKPHTSDDENDKASSPPAAT 579

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468844|ref|XP_004152131.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Cucumis sativus]

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/515 (69%), Positives = 404/515 (78%), Gaps = 38/515 (7%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFN 66
           D Q+NSAYLIKLELLAAKNLI ANLNGTSDPYAIITCG+EKRFSSM+PGSR PMWGEEFN
Sbjct: 82  DLQSNSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGTEKRFSSMIPGSRNPMWGEEFN 141

Query: 67  FSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTI 126
           FSVDELPVQI +TIYDWDI+WKS VLGSV VTVE+EG TGAVWYTLDSPSGQVCLHIKTI
Sbjct: 142 FSVDELPVQIHITIYDWDIVWKSAVLGSVTVTVENEGHTGAVWYTLDSPSGQVCLHIKTI 201

Query: 127 KLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIE 186
           KLPVNA   +NGYAGAN RRR SLDK   TVVHQKPG LQTIF LLPDE VE S+SC +E
Sbjct: 202 KLPVNAGSPVNGYAGANPRRRISLDKPELTVVHQKPGALQTIFELLPDEIVEHSFSCALE 261

Query: 187 RSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAG 246
           RSFLYHGRMYVS+WHICFHSN FS+QMKV+IP+GDIDEI+R+QHAFINPA+TIILRMGAG
Sbjct: 262 RSFLYHGRMYVSSWHICFHSNIFSKQMKVVIPLGDIDEIRRTQHAFINPAVTIILRMGAG 321

Query: 247 GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSS 306
           GHGVPPLGSPDGRVRYKFASFWNRNH +R LQR+  N+  MLEAEKKEKAESALRAHSSS
Sbjct: 322 GHGVPPLGSPDGRVRYKFASFWNRNHVVRALQRSVNNFREMLEAEKKEKAESALRAHSSS 381

Query: 307 IGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN------------------------- 341
           +  S  + KI  + + K +  Q F+KEEVL  I+N                         
Sbjct: 382 VRVSETKEKIPADDLPKSKNTQAFLKEEVLTSIHNGVFPCSPERFFSTLLSDGSGYTSAF 441

Query: 342 ----------MGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFV 391
                     MGQWHAADEY+GQVRE+ +RSLC SP+ P DTAMTE QH VLS DKK  V
Sbjct: 442 VAKRKDTNLVMGQWHAADEYEGQVRELTYRSLCHSPMCPPDTAMTEYQHVVLSEDKKKLV 501

Query: 392 FETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAV 451
           FETVQ AHDVPFG+ FE+H RW LE  AE+SS++DIK   AG HFKKWC++Q KIK GA+
Sbjct: 502 FETVQNAHDVPFGANFELHCRWSLEKNAEDSSSVDIK---AGVHFKKWCLMQSKIKAGAM 558

Query: 452 NKYKKEVELMLETARSYIKICTSGGETNNQSSTPS 486
            +YK+ V+L LE A  Y+   TSG ET+  +S PS
Sbjct: 559 LEYKRAVDLRLEVALEYMNSNTSGNETDKVASAPS 593

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484724|ref|XP_004156962.1| PREDICTED: LOW QUALITY PROTEIN: C2 and GRAM domain-containing protein At1g03370-like [Cucumis sativus]

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/515 (69%), Positives = 403/515 (78%), Gaps = 38/515 (7%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFN 66
           D Q+NSAYLIKLELLAAKNLI ANLNGTSDPYAIITCG+EKRFSSM+PGSR PMWGEEFN
Sbjct: 82  DLQSNSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGTEKRFSSMIPGSRNPMWGEEFN 141

Query: 67  FSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTI 126
           FSVDELPVQI +TIYDWDI+WKS VLGSV VTVE+EG TGAVWYTLDSPSGQVCLHIKTI
Sbjct: 142 FSVDELPVQIHITIYDWDIVWKSAVLGSVTVTVENEGHTGAVWYTLDSPSGQVCLHIKTI 201

Query: 127 KLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIE 186
           KLPVNA   +NGYAGAN RRR SLDK   TVVHQKPG LQTIF LLPDE VE S+SC +E
Sbjct: 202 KLPVNAGSPVNGYAGANPRRRISLDKPELTVVHQKPGALQTIFELLPDEIVEHSFSCALE 261

Query: 187 RSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAG 246
           RSFLYHGRMYVS+WHICFHSN FS+QMKV+IP+GDIDEI+R+QHAFINPA+TIILRMGAG
Sbjct: 262 RSFLYHGRMYVSSWHICFHSNIFSKQMKVVIPLGDIDEIRRTQHAFINPAVTIILRMGAG 321

Query: 247 GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSS 306
           GHGVPPLGSPDGRVRYKFASFWNRNH +R LQR+  N+  MLEAEKKEKAESALRAHSSS
Sbjct: 322 GHGVPPLGSPDGRVRYKFASFWNRNHVVRALQRSVNNFREMLEAEKKEKAESALRAHSSS 381

Query: 307 IGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN------------------------- 341
           +  S  + KI  + + K    Q F+KEEVL  I+N                         
Sbjct: 382 VRVSETKEKIPADDLPKSXNTQAFLKEEVLTSIHNGVFPCSPERFFSTLLSDGSGYTSAF 441

Query: 342 ----------MGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFV 391
                     MGQWHAADEY+GQVRE+ +RSLC SP+ P DTAMTE QH VLS DKK  V
Sbjct: 442 VAKRKDTNLVMGQWHAADEYEGQVRELTYRSLCHSPMCPPDTAMTEYQHVVLSEDKKKLV 501

Query: 392 FETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAV 451
           FETVQ AHDVPFG+ FE+H RW LE  AE+SS++DIK   AG HFKKWC++Q KIK GA+
Sbjct: 502 FETVQNAHDVPFGANFELHCRWSLEKNAEDSSSVDIK---AGVHFKKWCLMQSKIKAGAM 558

Query: 452 NKYKKEVELMLETARSYIKICTSGGETNNQSSTPS 486
            +YK+ V+L LE A  Y+   TSG ET+  +S PS
Sbjct: 559 LEYKRAVDLRLEVALEYMNSNTSGNETDKVASAPS 593

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331873|ref|NP_191525.2| C2 domain and GRAM domain-containing protein [Arabidopsis thaliana] gi|17065130|gb|AAL32719.1| putative protein [Arabidopsis thaliana] gi|30725388|gb|AAP37716.1| At3g59660 [Arabidopsis thaliana] gi|332646431|gb|AEE79952.1| C2 domain and GRAM domain-containing protein [Arabidopsis thaliana]

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/504 (69%), Positives = 397/504 (78%), Gaps = 40/504 (7%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
             +GD QTN+AY++K+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWG
Sbjct: 70  HLRGDTQTNAAYIVKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWG 129

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNF  DELP +I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+
Sbjct: 130 EEFNFPTDELPAKINVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLN 189

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           I  IKLPVNA R + GYAGA  RRR +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYS
Sbjct: 190 INAIKLPVNAPRAVTGYAGA-GRRRVTLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYS 248

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR 242
           C +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDEI+RSQHA INPAITIILR
Sbjct: 249 CALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILR 308

Query: 243 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRA 302
           MGAGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH MLE EKKE+A+SALRA
Sbjct: 309 MGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAQSALRA 368

Query: 303 HSSSI-GGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIY--------------------- 340
           HSSS+ GG + Q K  E+T   P K Q FIKEEVLV IY                     
Sbjct: 369 HSSSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYNDVFASTPEQVLNVLLADDST 428

Query: 341 --------------NMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPD 386
                         N+  WH A+EYDGQVRE+ FRS+C SP+ P DTA+TE QH VLSPD
Sbjct: 429 YTNEYRSARKDKNLNIEPWHTAEEYDGQVREIKFRSICNSPMCPPDTAVTEWQHVVLSPD 488

Query: 387 KKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKI 446
           KK+ VFETVQQ HDVPFGSYFE+H RW LE   E SS IDI+V   G HFKKWC++Q KI
Sbjct: 489 KKVLVFETVQQPHDVPFGSYFEVHCRWRLEAKDETSSVIDIRV---GVHFKKWCLMQSKI 545

Query: 447 KTGAVNKYKKEVELMLETARSYIK 470
           K GA+++YKKEVE+MLE A SY+K
Sbjct: 546 KAGAIDEYKKEVEVMLEVALSYLK 569

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582207|ref|XP_002531896.1| conserved hypothetical protein [Ricinus communis] gi|223528463|gb|EEF30495.1| conserved hypothetical protein [Ricinus communis]

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/443 (79%), Positives = 367/443 (82%), Gaps = 38/443 (8%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGDPQ NSAY+IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR PM
Sbjct: 75  MGQLKGDPQGNSAYIIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRNPM 134

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKSTVLGSV V VESEGQTGAVWYTLDSPSGQVC
Sbjct: 135 WGEEFNFSVDELPVQIQVTIYDWDIIWKSTVLGSVTVPVESEGQTGAVWYTLDSPSGQVC 194

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIKL VN+SR MNGYAGA+ARRR SLD QGPTVVHQKPGPLQTIFNL  DE VE S
Sbjct: 195 LHIKTIKLSVNSSRAMNGYAGASARRRISLDTQGPTVVHQKPGPLQTIFNLPADEIVEHS 254

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240
           YSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKVIIP+GDIDEI+RSQHAFINPAITII
Sbjct: 255 YSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPLGDIDEIRRSQHAFINPAITII 314

Query: 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AK YH MLE +KKE+AESAL
Sbjct: 315 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRALQRAAKTYHDMLEVQKKERAESAL 374

Query: 301 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN------------------- 341
           RAHSSSI G     KI ++ V K EK QPFIKEEVLVGI+N                   
Sbjct: 375 RAHSSSIRGG---IKIPDDIVPKVEKHQPFIKEEVLVGIHNDAFPCTAEQFFNLLLNDGS 431

Query: 342 ----------------MGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP 385
                           MGQWHAADEYDGQVRE+ FRSLC SP+ P DTAMTE QHAV SP
Sbjct: 432 KFTNEYRAVRKDTNLIMGQWHAADEYDGQVREITFRSLCHSPMCPPDTAMTEYQHAVFSP 491

Query: 386 DKKIFVFETVQQAHDVPFGSYFE 408
           D+KI VFETVQ AHDVPFGSYFE
Sbjct: 492 DRKILVFETVQNAHDVPFGSYFE 514

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820804|ref|XP_002878285.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324123|gb|EFH54544.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/487 (70%), Positives = 384/487 (78%), Gaps = 40/487 (8%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
           Q +GD QTN+AY+IK+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWG
Sbjct: 71  QMRGDTQTNAAYIIKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWG 130

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNF  DELPV+I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+
Sbjct: 131 EEFNFPTDELPVKISVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLN 190

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           I  IKLPVNA R + GYAGA  RRR +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYS
Sbjct: 191 INAIKLPVNAPRAVTGYAGA-GRRRVTLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYS 249

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR 242
           C +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDEI+RSQHA INPAITIILR
Sbjct: 250 CALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILR 309

Query: 243 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRA 302
           MGAGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH MLE EKKE+AESALRA
Sbjct: 310 MGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAESALRA 369

Query: 303 HSSSI-GGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIY--------------------- 340
           HSSS+ GG + Q K  E+T   P K Q FIKEEVLV IY                     
Sbjct: 370 HSSSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYNDVFASTPEQVLNVLLADDST 429

Query: 341 --------------NMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPD 386
                         N+  WH A+EYDGQVRE+ FRS+C SP+ P DTA+TE QH VLSPD
Sbjct: 430 YTNEYRSARKDKNLNIEPWHTAEEYDGQVREIKFRSICNSPMCPPDTAVTEWQHVVLSPD 489

Query: 387 KKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKI 446
           KK+ VFETVQQ HDVPFGSYFE+H RW LE   E SS IDI+V   G HFKKWC++Q KI
Sbjct: 490 KKVLVFETVQQPHDVPFGSYFEVHCRWRLEAKDETSSVIDIRV---GVHFKKWCLMQSKI 546

Query: 447 KTGAVNK 453
           K GA+++
Sbjct: 547 KAGAIDE 553

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
TAIR|locus:2097578	594	AT3G59660 "AT3G59660" [Arabido	0.682	0.565	0.733	2.6e-184
UNIPROTKB|Q5Z6I4	1037	OSJNBa0055N24.36 "Putative Osn	0.522	0.247	0.271	3e-18
UNIPROTKB|Q66VB0	1086	Os06g0607900 "Os06g0607900 pro	0.530	0.240	0.266	6.8e-16
TAIR|locus:2157707	1027	AT5G50170 "AT5G50170" [Arabido	0.217	0.104	0.315	3.3e-15
DICTYBASE|DDB_G0267942	898	DDB_G0267942 "GRAM domain-cont	0.296	0.162	0.248	7.4e-11
TAIR|locus:2205625	598	VAD1 "VASCULAR ASSOCIATED DEAT	0.217	0.178	0.325	2e-10
UNIPROTKB|Q69V64	354	P0556B08.10 "C2 domain-contain	0.233	0.324	0.347	1.1e-08
RGD|1305443	733	Gramd1b "GRAM domain containin	0.170	0.114	0.333	2.1e-08
UNIPROTKB|Q3KR37	738	GRAMD1B "GRAM domain-containin	0.170	0.113	0.333	2.7e-08
DICTYBASE|DDB_G0284461	623	DDB_G0284461 "leucine-rich rep	0.227	0.179	0.280	2.8e-08

TAIR|locus:2097578 AT3G59660 "AT3G59660" [Arabidopsis thaliana (taxid:3702)]

 Score = 1323 (470.8 bits), Expect = 2.6e-184, Sum P(2) = 2.6e-184
 Identities = 248/338 (73%), Positives = 276/338 (81%)

Query:     5 KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEE 64
             +GD QTN+AY++K+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWGEE
Sbjct:    72 RGDTQTNAAYIVKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWGEE 131

Query:    65 FNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK 124
             FNF  DELP +I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+I 
Sbjct:   132 FNFPTDELPAKINVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLNIN 191

Query:   125 TIKLPVNASRVMXXXXXXXXXXXXSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCV 184
              IKLPVNA R +            +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYSC 
Sbjct:   192 AIKLPVNAPRAVTGYAGAGRRRV-TLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYSCA 250

Query:   185 IERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMG 244
             +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDEI+RSQHA INPAITIILRMG
Sbjct:   251 LERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILRMG 310

Query:   245 AGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLXXXXXXXXXXXLRAHS 304
             AGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH ML           LRAHS
Sbjct:   311 AGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAQSALRAHS 370

Query:   305 SSI-GGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN 341
             SS+ GG + Q K  E+T   P K Q FIKEEVLV IYN
Sbjct:   371 SSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYN 408

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

UNIPROTKB|Q5Z6I4 OSJNBa0055N24.36 "Putative Osnop" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 253 (94.1 bits), Expect = 3.0e-18, P = 3.0e-18
 Identities = 75/276 (27%), Positives = 132/276 (47%)

Query:    12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE 71
             + +L+ + L+   NL     +G SDPY + TC  + + SS+   +  P W E F F   E
Sbjct:   554 NGWLLTVALIDGTNLAATKSSGYSDPYVVFTCNGKTKTSSIKFHTLEPRWNEIFEFDAME 613

Query:    72 LPVQII-VTIYDWDIIWKSTV-LGSVIVT-VESE-GQTGAVWYTLDSPSGQVCLHIKTIK 127
              P  ++ + +YD+D  +     LG   V  ++S   +   +W  L     Q C     ++
Sbjct:   614 DPPSVMKINVYDFDGPFDEVESLGHAEVNFLKSNLSELSDIWIPLKGKLAQACQSKLHLR 673

Query:   128 LPVNASRVMXXXXXXXXXXXXSLDKQ-GPTVVHQKP---GPLQTIFNLLPDEFVELSYSC 183
             + +N SR               ++K+ G  +  + P      Q IF+L P+EF+   ++C
Sbjct:   674 IILNNSR----GTEVMKDYLDKMEKEVGKKIAVRSPHTNSAFQKIFSLPPEEFLINDFTC 729

Query:   184 VIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQ---RSQHAFINPAITII 240
              ++R  L  GR+++S   I F++N F  + K      DI++IQ    + ++  +P++ II
Sbjct:   730 HLKRKMLTQGRLFLSPRIIGFYTNLFGHKTKFFFLWEDIEDIQVMPATLYSMGSPSLLII 789

Query:   241 LRMGAG---GHGVPPLGSPDGRVRYKFASFWNRNHA 273
             L  G G    HG   L + +GR+++ F SF + N A
Sbjct:   790 LHKGRGMDARHGAKQLDN-EGRLKFHFQSFVSFNVA 824

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

UNIPROTKB|Q66VB0 Os06g0607900 "Os06g0607900 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 232 (86.7 bits), Expect = 6.8e-16, P = 6.8e-16
 Identities = 72/270 (26%), Positives = 126/270 (46%)

Query:    14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNF-SVDEL 72
             +L+ + L+    +  +N     D YA+ TC ++++ SS+   +  P W E + F ++D+ 
Sbjct:   604 WLMTVALIEGTGITNSNSKELFDMYAVFTCNAKRKTSSVKFQTSEPKWNEIYEFDAMDDP 663

Query:    73 PVQIIVTIYDWDIIWKSTVLGSVIVT-VESE-GQTGAVWYTLDSPSGQVCLHIKTIKLPV 130
             P ++ V I+D +  +  + +G   V  ++S       VW  L+    Q       +++ +
Sbjct:   664 PSRMDVAIHDANGPFDQSPIGHAEVNFLKSNLSDLTDVWLPLEGKCDQTSNPKIHLRIFL 723

Query:   131 NASRVMXXXXXXXXXXXXSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFL 190
             N SR               + K+      Q     + +FNL P+EF+   ++C ++R   
Sbjct:   724 NNSRGTEVVMNYLAKMRKEVGKKINLRSAQTNAAFRKLFNLPPEEFLIDDFTCHLKRKMP 783

Query:   191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI--NPAITIILRMGAG-- 246
               GR++ S   I F+SN F  + K      D+D+IQ         +P++TIILR G G  
Sbjct:   784 LQGRLFFSPRIIGFYSNIFGHKTKFFFLWDDVDDIQVIPPTLSIGSPSLTIILRKGRGLE 843

Query:   247 -GHGVPPLGSPDGRVRYKFASFWNRNHALR 275
               HG      P+GR++Y F SF + N A R
Sbjct:   844 AKHGAKGT-DPNGRLKYYFQSFVSFNDAHR 872

GO:0010152 "pollen maturation" evidence=IMP

TAIR|locus:2157707 AT5G50170 "AT5G50170" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 3.3e-15, Sum P(3) = 3.3e-15
 Identities = 36/114 (31%), Positives = 56/114 (49%)

Query:   160 QKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPI 219
             QK    Q +F L  +EF+   Y+C ++R     G++++SA  + F+SN F  + K     
Sbjct:   689 QKNSAFQKLFGLPHEEFLLKEYTCYLKRKLPVQGKLFLSARIVAFYSNVFGHKTKFYFLW 748

Query:   220 GDIDEIQRSQHAFIN---PAITIILRMGAG---GHGVPPLGSPDGRVRYKFASF 267
              DID+IQ     F +   P + IIL+   G    HG       +GR+ + F SF
Sbjct:   749 EDIDDIQVLPPTFASLGSPLLLIILKKNRGLDAKHGAKSQDD-EGRLSFYFQSF 801

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0267942 DDB_G0267942 "GRAM domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 125 (49.1 bits), Expect = 7.4e-11, Sum P(3) = 7.4e-11
 Identities = 38/153 (24%), Positives = 72/153 (47%)

Query:   341 NMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHD 400
             N+  W   + + G +REV + +   SPI P  T + E+Q   L+  K I   +T+    D
Sbjct:   534 NVKPWTFRERF-GTIREVEYVAPVSSPIGPDKTRIQETQRYQLTRKKLIVETDTIML--D 590

Query:   401 VPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVEL 460
             +P+G +F I  +W +   ++++  + I +      F K    + KI+T  V + K   + 
Sbjct:   591 IPYGDHFRIEAKWEVTETSQDTCRLSISLT---VRFVKKTWFKSKIETTTVKETKTSFDK 647

Query:   461 MLETARSYI-KICTSGGETNNQSSTPSVTPDCN 492
              ++ A+  + K+       +  SST + T + N
Sbjct:   648 WVQLAKVEVQKMLQVKPLPSASSSTATNTTNNN 680

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2205625 VAD1 "VASCULAR ASSOCIATED DEATH1" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
 Identities = 41/126 (32%), Positives = 62/126 (49%)

Query:   151 DKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFS 210
             D Q   +   K    + +F L  DE +   ++C  + S L  G MY+   +ICF+SN F 
Sbjct:    60 DNQSEVI--SKSEEYRQLFRLPADEILVQDFNCACQESILMQGHMYLFIHYICFYSNIFG 117

Query:   211 RQMKVIIPIGDIDEIQRSQHAFINP-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWN 269
              + K IIP  +I  ++R++ A I P AI I+    AGG             +Y FASF +
Sbjct:   118 YETKKIIPFAEISCVKRAKTAGIFPNAIEIL----AGGK------------KYFFASFLS 161

Query:   270 RNHALR 275
             R+ A +
Sbjct:   162 RDEAFK 167

GO:0005634 "nucleus" evidence=ISM

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q69V64 P0556B08.10 "C2 domain-containing protein-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 159 (61.0 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 42/121 (34%), Positives = 63/121 (52%)

Query:   160 QKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPI 219
             Q     + +FNL P+EF+   ++C ++R     GR++ S   I F+SN F  + K     
Sbjct:    21 QTNAAFRKLFNLPPEEFLIDDFTCHLKRKMPLQGRLFFSPRIIGFYSNIFGHKTKFFFLW 80

Query:   220 GDIDEIQRSQHAFI--NPAITIILRMGAG---GHGVPPLGSPDGRVRYKFASFWNRNHAL 274
              D+D+IQ         +P++TIILR G G    HG      P+GR++Y F SF + N A 
Sbjct:    81 DDVDDIQVIPPTLSIGSPSLTIILRKGRGLEAKHGAKGT-DPNGRLKYYFQSFVSFNDAH 139

Query:   275 R 275
             R
Sbjct:   140 R 140

GO:0010152 "pollen maturation" evidence=IMP

RGD|1305443 Gramd1b "GRAM domain containing 1B" [Rattus norvegicus (taxid:10116)]

 Score = 116 (45.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query:   155 PTVVHQKPGPLQTIFNLLPD-EFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQM 213
             PT   Q+    + +F  LPD E + + YSC ++R  L  GR+Y+S   ICF+SN F  + 
Sbjct:    84 PTY-KQRNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWET 142

Query:   214 KVIIPIGDIDEIQRSQHAFINP-AITI 239
              + + + DI  + + + A + P AI +
Sbjct:   143 LLTVRLKDICSMTKEKTARLIPNAIQV 169

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3KR37 GRAMD1B "GRAM domain-containing protein 1B" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query:   155 PTVVHQKPGPLQTIFNLLPD-EFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQM 213
             PT   Q+    + +F  LPD E + + YSC ++R  L  GR+Y+S   ICF+SN F  + 
Sbjct:    89 PTY-KQRNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWET 147

Query:   214 KVIIPIGDIDEIQRSQHAFINP-AITI 239
              + + + DI  + + + A + P AI +
Sbjct:   148 LLTVRLKDICSMTKEKTARLIPNAIQV 174

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0284461 DDB_G0284461 "leucine-rich repeat-containing protein (LRR)" [Dictyostelium discoideum (taxid:44689)]

 Score = 161 (61.7 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
 Identities = 34/121 (28%), Positives = 63/121 (52%)

Query:    15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
             ++++ ++  ++L+ ++ NG SD YA +  G +K+ + ++  S  P WGE F   +  L  
Sbjct:     3 ILQVNVIEGRDLVASDSNGFSDCYATLILGQQKKKTKIIKKSLNPKWGETFLMRISPLDE 62

Query:    75 QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS-PS-------GQVCLHIKTI 126
              + V + DWD       +G   + + S   T AVWYTL + P+       G+VC+  + +
Sbjct:    63 TLHVLLQDWDQFSSDDFMGECFIDINSLDDT-AVWYTLSTRPNKPDDFVKGEVCIKARVV 121

Query:   127 K 127
             K
Sbjct:   122 K 122

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	492
cd13219	161	cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-conta	2e-75
cd00030	102	cd00030, C2, C2 domain	3e-21
cd13220	111	cd13220, PH-GRAM_GRAMDC, GRAM domain-containing pr	6e-19
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	1e-16
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-15
pfam00168	85	pfam00168, C2, C2 domain	5e-15
smart00239	101	smart00239, C2, Protein kinase C conserved region	3e-14
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	4e-12
pfam02893	60	pfam02893, GRAM, GRAM domain	5e-12
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	2e-11
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	9e-11
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	9e-10
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-09
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	1e-08
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	3e-08
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	7e-08
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-07
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	3e-07
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	7e-07
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	7e-07
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-06
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	3e-05
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	3e-05
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	3e-05
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	3e-05
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	7e-05
cd13349	135	cd13349, PH-GRAM1_TBC1D8, TBC1 domain family membe	9e-05
cd13217	100	cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and	1e-04
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	2e-04
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-04
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	5e-04
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	5e-04
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	5e-04
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	8e-04
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	9e-04
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	0.001
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	0.001
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	0.001
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	0.002
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	0.003
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	0.004
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	0.004
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	0.004
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	0.004

>gnl|CDD|241373 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  234 bits (598), Expect = 2e-75
 Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 6/162 (3%)

Query: 144 ARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHIC 203
           ++    + K+      QK    Q +F L P+EF+   ++C ++R F   GR+++SA  I 
Sbjct: 1   SKMEKEVGKKINLRSPQKNSAFQKLFGLPPEEFLINDFTCALKRKFPLQGRLFLSARIIG 60

Query: 204 FHSNAFSRQMKVIIPIGDIDEIQRSQHAF--INPAITIILRMG---AGGHGVPPLGSPDG 258
           F+SN F  + K      DI+EIQ S  +    +P+I IILR G      HG  P   P+G
Sbjct: 61  FYSNLFGHKTKFFFLWEDIEEIQVSPPSLSVGSPSIVIILRKGRGLDARHGAKP-QDPEG 119

Query: 259 RVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           R+++ F SF + NHA R +    KN     E +K+   ES L
Sbjct: 120 RLKFHFQSFVSFNHAFRTIMALWKNRSLSPEQKKQIVEESEL 161

C2GRAM contains two N-terminal C2 domains followed by a single PH-GRAM domain. Since it contains both of these domains it is assumed that this gene cross-links both calcium and phosphoinositide signaling pathways. In general he C2 domain is involved in binding phospholipids in a calcium dependent manner or calcium independent manner. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 161

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 88.3 bits (219), Expect = 3e-21
 Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 5/102 (4%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPV 74
           +++ ++ A+NL   +LNG SDPY  ++ G +++F + +V  +  P+W E F F V +   
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 75  Q-IIVTIYDWDIIWKSTVLGSVIVTVES---EGQTGAVWYTL 112
             + V ++D D   K   LG V + +      G+ G +W  L
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 81.8 bits (203), Expect = 6e-19
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 17/118 (14%)

Query: 169 FNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228
            +L  DE +   YSC ++R  L  GR+Y+S  HICF+SN F  + K++IP  DI  I++ 
Sbjct: 4   KSLPDDERLIDDYSCALQRDILLQGRLYISENHICFYSNIFGWETKLVIPFKDITSIEKK 63

Query: 229 QHAFINP-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYH 285
           + A + P AI I                     +Y FASF +R+     + R   N  
Sbjct: 64  KTAGLFPNAIQIETLTE----------------KYFFASFLSRDSTFDLITRVWSNAL 105

The GRAMDC proteins are membrane proteins. Nothing is known about its function. Members include: GRAMDC1A, GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and GRAMDC-like proteins. All of the members, except for GRAMDC4 are included in this hierarchy. Each contains a single PH-GRAM domain at their N-terminus. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 111

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQ 229
            L  +E +   YSC + R+    GR+Y+S + +CF SN   +  KV+IP+ DI  I++S 
Sbjct: 1   KLPEEEKLIADYSCYLSRTGPVQGRLYISNYRLCFRSNLPGKLTKVVIPLADITRIEKST 60

Length = 60

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 72.5 bits (178), Expect = 2e-15
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-V 78
           +L A++L   + NGTSDP+  +    +   +S+V  S YP W E F F + E     + V
Sbjct: 6   VLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSV 65

Query: 79  TIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
            ++DWD++ K+  LG V+ ++++  Q      W+ L
Sbjct: 66  EVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRL 101

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 69.6 bits (171), Expect = 5e-15
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEFNFSVDEL 72
          +++ +++AKNL   +LNG SDPY  ++ G +K+    + +V  +  P+W E F F V   
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 73 PVQ-IIVTIYDWDIIWKSTVLGSVI 96
           +  + + +YD+D   K   +G V 
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 68.3 bits (167), Expect = 3e-14
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEFNFSVDE 71
            + +++++A+NL   +  G SDPY  ++   + +    + +V  +  P+W E F F V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 72  LPVQ-IIVTIYDWDIIWKSTVLGSVIVTVES 101
             +  + + +YD D   +   +G V + +  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSD 91

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 13/122 (10%)

Query: 15  LIKLELLAAKNLIGANLN------GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS 68
           ++++ ++ A++L+  +        G SDPY I+  G++   S ++  +  P W E +   
Sbjct: 2   VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAV 61

Query: 69  VDELP-VQIIVTIYDWDIIWKSTVLGSV---IVTVESEGQTGAVWYTL-DSPSGQVCLHI 123
           VDE+P  ++ + ++D D   K   LG +   + +VE +G     W  L D  SG++ L +
Sbjct: 62  VDEVPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDE-WLPLEDVKSGRLHLKL 119

Query: 124 KT 125
           + 
Sbjct: 120 EW 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 60.7 bits (148), Expect = 5e-12
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 171 LLPDEFVELSYSCVIERSF-LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQ 229
           L P+E +   YSC ++R      GR+Y++   +CF S+ F     ++IP+ DI+ +++ +
Sbjct: 1   LPPEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKFGDLTVLVIPLADIERVEKEK 60

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ LI  +  GTSDPY  +  G  K+ +  +P +  P+W E+F+F       +
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS +           LG  I+ V +      VWY L+      + SG 
Sbjct: 63  IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGA 122

Query: 119 VCLHI 123
           + LHI
Sbjct: 123 IRLHI 127

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 59.0 bits (143), Expect = 9e-11
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 16  IKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
           +++ ++ AK+L   +    G SDPYAI++ G+++  +  +P +  P W     F +    
Sbjct: 3   LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62

Query: 74  VQII-VTIYDWDIIWKSTVLGSV------IVTVESEGQTGAVWYTLDS 114
            Q++ + ++D D       LG        +      GQ+   W TL S
Sbjct: 63  NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDK-WITLKS 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 56.0 bits (136), Expect = 9e-10
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 15/100 (15%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPV 74
           + +++++A+NL  A+ NG SDP+       EK F +  +  +  P+W E F     E+PV
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESF-----EVPV 55

Query: 75  ------QIIVTIYDWDIIWKSTVLGSVIV---TVESEGQT 105
                  + V +YDWD   K  +LGS  +    +E E  T
Sbjct: 56  PSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETT 95

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-V 78
           L+  KNL   + NG SDPY     G+EK  S +   +  P W E+F+  + +   QI+ +
Sbjct: 6   LVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65

Query: 79  TIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTLDSPSGQVCLHI 123
            ++D D   K   +G   + +      QT ++   L+   G + L +
Sbjct: 66  EVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGEGSLLLLL 112

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 28/114 (24%)

Query: 21  LAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---- 72
           LA K+      NGT DP+A +T      ++ + + +   +  P + E F F +       
Sbjct: 11  LALKS------NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYE 64

Query: 73  ------------PVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
                         ++ V ++   ++     LG V + ++   Q G+   WY L
Sbjct: 65  KKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFL 118

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           L+K+ ++   NL   +   +SDPY ++T G++K  + ++  +  P+W EE   SV     
Sbjct: 3   LLKVRVVRGTNLAVRDFT-SSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVE 100
            + + ++D D   K   +G   + +E
Sbjct: 62  PLKLEVFDKDTFSKDDSMGEAEIDLE 87

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGS-RYPMWGEEFNFSVDELPVQ-- 75
            L++AK L   +  G  DPY II C +++R S +  G  R P W E+F F+V E P    
Sbjct: 6   LLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTV-EYPGWGG 64

Query: 76  ---IIVTIYDWDIIWKSTVLGSVIVTVE 100
              +I+ I D D       +G   + ++
Sbjct: 65  DTKLILRIMDKDNFSDDDFIGEATIHLK 92

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 32/114 (28%), Positives = 63/114 (55%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT--CGSE---KRFSSMVPGSRYPMWGEEFNFSV- 69
           + + +L A+NL  ++  G SDPY  ++   G +   K+ +S+  G+  P++ E F+F V 
Sbjct: 16  LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75

Query: 70  -DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
            ++L  V +++T+ D D + ++ V+G V++  +S G+    W   L SP   + 
Sbjct: 76  AEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIA 129

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 17  KLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV-- 74
           +L +L AKNL      GT DPY  ++    +   +       P WGEEF F  D+ P   
Sbjct: 3   RLRILEAKNLP---SKGTRDPYCTVSLDQVEVARTKTVEKLNPFWGEEFVF--DDPPPDV 57

Query: 75  ---QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS--PSGQVC--LHIK 124
               +     D     +  V+G V ++    GQ    W+ L    P  +V   + ++
Sbjct: 58  TFFTLSFYNKDKRSKDRDIVIGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLR 114

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 47.9 bits (115), Expect = 7e-07
 Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSS---MVPGSRYPMWGEEFNFSVDE 71
           L+++ ++ A+NL   + NG SDPY  I  G +K+ +     +P +  P++G+ F      
Sbjct: 1   LVRVYVVRARNLQPKDPNGKSDPYLKIKLG-KKKINDRDNYIPNTLNPVFGKMFELEA-T 58

Query: 72  LPVQII--VTIYDWDIIWKSTVLGSVIVTVE 100
           LP   I  +++ D+D++    ++G  ++ +E
Sbjct: 59  LPGNSILKISVMDYDLLGSDDLIGETVIDLE 89

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 47.5 bits (114), Expect = 7e-07
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 169 FNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228
           F L   E +   Y   ++R    +G++Y+S  + CF S     + K+I+P+ DI+ +++ 
Sbjct: 7   FALPESEKLLAYYYAYLQRVLPVYGKLYISDNYFCFRSLLPGTRTKMILPLKDIENVEKE 66

Query: 229 Q-HAFINPAITIILRMGAGGH 248
           +   F    + I++R    GH
Sbjct: 67  KGFRFGYSGLVIVIR----GH 83

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 11/104 (10%)

Query: 8   PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWG 62
           P  N    I + ++ A+NL   ++NGTSDPY  +         EK+ + +   +  P++ 
Sbjct: 12  PTANR---ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFN 68

Query: 63  EEFNFSV--DEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESEG 103
           E F F++  + L    +I+T+ D D + ++ ++G + +  +S G
Sbjct: 69  ESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGG 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 14  YLIKLELLAAKNLIGANLNGTSDPYAIIT-CGSEKRFSS--MVPGSRYPMWGEEFNFSV- 69
           +L  + ++ A+NL   + NG SDPY  +     ++R +    +  +  P W EEF   V 
Sbjct: 1   HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60

Query: 70  DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-----EGQTGAVWYTLDSPSGQVCLHI 123
              P+ I  T++D   + K  + G   + ++      +G    +W  LD   G++ L +
Sbjct: 61  AGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-TQGRLLLRV 118

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 14/95 (14%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELP- 73
           +L AKNL   ++ G SDPY  I         +K+ +++   +  P + E F+F   E+P 
Sbjct: 21  ILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSF---EVPF 77

Query: 74  -----VQIIVTIYDWDIIWKSTVLGSVIVTVESEG 103
                V +IVT+ D+D I K+  +G V++   + G
Sbjct: 78  EQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATG 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT 79
           + +A+ L   +  G +DPY II C  E   S +   +  P +  +  F   +    I + 
Sbjct: 9   VHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQ 68

Query: 80  IYDWDIIWKSTVLGSVIVTVE 100
           +++ +++     LG   ++ +
Sbjct: 69  VWNSNLL-CDEFLGQATLSAD 88

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 19/91 (20%)

Query: 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR---SQHAFINPAITIILRMGAGGHG 249
           G +Y++ + + F S       ++ +P+G I  +++   S     +  + I  +       
Sbjct: 19  GTLYLTNYRLYFKSKERDSPTELDVPLGVISRVEKVGGSSSGENSYGLEITCK------- 71

Query: 250 VPPLGSPDGRVRYKFASFWNRNHALRQLQRT 280
                  D R   +FA F   +H+ R +   
Sbjct: 72  -------DMRN-LRFA-FKQEDHSRRDIFEL 93

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 10   TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFS 68
             NS YL  + L + +NL  ++ NG SDP+  +    +  + + +V  +  P+W EEF   
Sbjct: 1037 ENSGYL-TIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIE 1095

Query: 69   VD-ELPVQIIVTIYDWDIIWKSTVLGSVIVTVES 101
            V   +   + + + DWD   K+ +LG+  + +  
Sbjct: 1096 VLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSK 1129

Length = 1227

>gnl|CDD|241503 cd13349, PH-GRAM1_TBC1D8, TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 169 FNLLPDEFVELSYSCVIERSFL-YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR 227
           FN    E +   YSC   +  +   G +Y+S  H+CF+S    +++K++IP  ++ +++R
Sbjct: 19  FNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVEVQKLER 78

Query: 228 SQHAFINPAITIILR 242
           + + F+   I +  +
Sbjct: 79  TSNVFMTDTIRVTTQ 93

TBC1D8 may act as a GTPase-activating protein for Rab family protein(s). TBC1D8 contains an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 135

>gnl|CDD|241371 cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 173 PDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAF 232
            +E V        +      G +Y+S  H+CF+S     + K++I   ++ +I++S    
Sbjct: 1   EEELVTSYSCSYWKGKVPRQGWLYLSLNHLCFYSFLLGSESKLVIRWTELTDIEKS---- 56

Query: 233 INPAIT 238
            N  I 
Sbjct: 57  GNTTIK 62

TBC1D8, TBC1D8B, TBC1D9 and TBC1D9B may act as a GTPase-activating proteins for Rab family protein(s). They all contain an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 100

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 21 LAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
          L A+ L+    +GT+D Y II  G EK  +S+   +  P+W EE +F   ELP
Sbjct: 6  LQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSF---ELP 55

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 18/91 (19%)

Query: 11  NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR--------YPMWG 62
            S   +++E+L A+NL+  + NG+SDP+  +       F   VP  +        +P++ 
Sbjct: 13  ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLF-PDVPTPKTQVKKKTLFPLFD 71

Query: 63  EEFNFSVDELPVQ-------IIVTIYDWDII 86
           E F F+V   P Q       ++ T+ D+D++
Sbjct: 72  ESFEFNVP--PEQCSVEGALLLFTVKDYDLL 100

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQI-I 77
           ++  KNL   ++ G+SDPY I+   +E    ++ V  +  P WGEE+      LP     
Sbjct: 6   IVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTV---HLPPGFHT 62

Query: 78  VTIY--DWDIIWKSTVLGSVIVTVE 100
           V+ Y  D D + +  V+G V +T E
Sbjct: 63  VSFYVLDEDTLSRDDVIGKVSLTRE 87

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 20/78 (25%), Positives = 39/78 (50%)

Query: 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT 79
          ++ A  L  A++ G SDP+ ++   + +  +  +  +  P W + F F + ++   + VT
Sbjct: 7  VIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVT 66

Query: 80 IYDWDIIWKSTVLGSVIV 97
          +YD D   K   LG V +
Sbjct: 67 VYDEDKDKKPEFLGKVAI 84

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 23  AKNLIGAN-LNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQIIVTI 80
           AKNL   +  N   D Y  +    E+ F +  V  S  P +GE+F F +      +   I
Sbjct: 9   AKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYI 68

Query: 81  YDWDIIWKSTVLGSVIVTVE 100
           YD D++ + +V+G V +  E
Sbjct: 69  YDRDVLRRDSVIGKVAIKKE 88

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 24  KNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD 82
           +NL   +  GTSDPY     G +  + S  +  +  P+W E+F   ++++   + + ++D
Sbjct: 10  RNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFD 69

Query: 83  WDIIWKSTVLGSVIVTVESE 102
           +D       +GS  V + + 
Sbjct: 70  YDRGLTDDFMGSAFVDLSTL 89

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 38.4 bits (90), Expect = 9e-04
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 16 IKLELLAAKNL-IGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDELP 73
          +K+ ++AA++L +    +  +D +  +  GS    + +V  S  P+W  E F F VD+  
Sbjct: 1  LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60

Query: 74 VQ---IIVTIYDWDIIWKSTVLGSVIV 97
          +Q   + + + D D    +  +G V +
Sbjct: 61 LQDEPLQIRVMDHDTYSANDAIGKVYI 87

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 12/82 (14%)

Query: 23 AKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSV-----DELPVQII 77
          AKNL  A       PY  +T G   + S +   +  P+W E F F V      EL +++ 
Sbjct: 9  AKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVK 68

Query: 78 VTIYDWDIIWKSTVLGSVIVTV 99
              D         LGS+ + +
Sbjct: 69 ----D---DKTGKSLGSLTLPL 83

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 9/86 (10%)

Query: 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGE----EFNFSV 69
          + +++ ++ A+ L+G N+    DP   +  G +K+++S+  G+  P + E     F+ S 
Sbjct: 4  FQVRVRVIEARQLVGGNI----DPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESP 59

Query: 70 DELPVQIIV-TIYDWDIIWKSTVLGS 94
          DEL  +II  ++YD   +   T++GS
Sbjct: 60 DELFDKIIKISVYDSRSLRSDTLIGS 85

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV- 69
           + +E+  AKNLI  + NG SDPY  +          K+ +  +  +  P+W E F F + 
Sbjct: 15  LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74

Query: 70  -DELPVQIIVTIYDWDIIWKSTVLGSVIVTV-ESEGQTGAVWYTL 112
             +   ++ + ++DWD   ++  +GS+   V E        WY L
Sbjct: 75  PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGWYKL 119

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKR--FSSMVPGSRY---PMWGEEFNFSV--DEL 72
           ++ A +L   ++ GTSDPY  +    +K+  F + V   R    P++ E F F V   EL
Sbjct: 22  IIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKV--HRKTLNPVFNETFTFKVPYSEL 79

Query: 73  PVQIIV-TIYDWDIIWKSTVLGSVIVT 98
             + +V ++YD+D   K  ++G V V 
Sbjct: 80  GNKTLVFSVYDFDRFSKHDLIGEVRVP 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 25  NLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSV--DELPVQ-I 76
           NL   + NG SDP+  +    +     K  + +   +  P + EEF + +   +L  + +
Sbjct: 24  NLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTL 83

Query: 77  IVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY 110
            +T++D DI   +  +G + + + ++G+    W 
Sbjct: 84  EITVWDKDIGKSNDYIGGLQLGINAKGERLRHWL 117

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV---- 74
           E++ A++L+  +  G+S  Y  +    +K+ +   P    P+W E+  F+V +       
Sbjct: 5   EVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNL 64

Query: 75  QIIVTIY-DWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLD 113
            + V +Y D     + + LG V +   +     +     Y L+
Sbjct: 65  VLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLE 107

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 13/115 (11%)

Query: 12  SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFN 66
           +A  + L ++ A+NL   ++ G SDPY  ++   E     K+ +S+   +  P + E   
Sbjct: 12  TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALV 71

Query: 67  F-----SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSP 115
           F     +VD   V +I+ + D+D +  + ++G   V   ++GQ    W   L +P
Sbjct: 72  FDVPPENVDN--VSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANP 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 24/109 (22%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSV--DEL 72
           +L A++L   +++G +DPY  +          K+ + +   +  P++ E F F +  +EL
Sbjct: 21  VLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80

Query: 73  P-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL-DSPSGQV 119
             + +   + D D + K+ V+G +++  ++ G  G  W  + + P  Q+
Sbjct: 81  EDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQI 129

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 20/111 (18%)

Query: 23  AKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-VTIY 81
            ++L   N NG SDPY  ++ GS++  + +V  +  P W     F V +L   ++ +T++
Sbjct: 24  GRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVF 83

Query: 82  DWDIIWKSTVLG------SVIVTVESEG-------------QTGAVWYTLD 113
           D D       LG      + I+    E               TG V   LD
Sbjct: 84  DRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLD 134

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	492
KOG1032	590	consensus Uncharacterized conserved protein, conta	100.0
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.84
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.8
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.79
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.78
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.77
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.77
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.76
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.76
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.76
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.76
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.75
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.75
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.74
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.74
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.73
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.73
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.73
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.73
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.72
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.72
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.72
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.72
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.72
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.72
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.71
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.71
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.71
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.7
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.7
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.7
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.69
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.69
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.69
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.69
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.69
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.69
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.68
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.68
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.68
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.68
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.67
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.67
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.67
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.66
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.66
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.66
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.66
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.65
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.65
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.64
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.64
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.64
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.64
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.64
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.63
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.63
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.63
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.63
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.62
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.62
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.62
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.62
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.61
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.61
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.61
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.6
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.6
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.6
KOG1032	590	consensus Uncharacterized conserved protein, conta	99.59
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.59
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.58
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.58
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.57
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.57
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.56
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.56
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.55
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.55
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.54
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.54
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.54
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.54
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.53
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.53
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.53
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.52
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.52
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.52
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.51
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.5
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.49
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.48
PLN03008	868	Phospholipase D delta	99.47
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.47
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.46
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.45
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.45
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.43
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.42
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.31
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.17
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.14
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.14
PLN02223	537	phosphoinositide phospholipase C	99.06
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.06
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	98.98
PLN02952	599	phosphoinositide phospholipase C	98.92
PLN02230	598	phosphoinositide phospholipase C 4	98.88
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.88
PLN02270	808	phospholipase D alpha	98.88
PLN02222	581	phosphoinositide phospholipase C 2	98.84
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.83
PLN02228	567	Phosphoinositide phospholipase C	98.79
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.79
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.79
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.79
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.68
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.64
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.61
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.36
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.19
PLN02352	758	phospholipase D epsilon	98.14
KOG4347	671	consensus GTPase-activating protein VRP [General f	98.13
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	97.99
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.95
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.54
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.38
PF14470	96	bPH_3: Bacterial PH domain	97.24
PLN02964	644	phosphatidylserine decarboxylase	97.18
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.08
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.05
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	96.96
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	96.94
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	96.88
KOG1327	529	consensus Copine [Signal transduction mechanisms]	96.86
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	96.83
KOG3837	523	consensus Uncharacterized conserved protein, conta	95.32
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	94.99
PF15627	156	CEP76-C2: CEP76 C2 domain	93.78
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	93.76
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	93.61
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	93.57
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	93.18
KOG1452	442	consensus Predicted Rho GTPase-activating protein	92.59
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	92.35
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	91.97
cd01201	108	Neurobeachin Neurobeachin Pleckstrin homology-like	90.81
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	89.58
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	88.91
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	88.2
PF07289	339	DUF1448: Protein of unknown function (DUF1448); In	87.37
PF11605	89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	87.33
PF06115	118	DUF956: Domain of unknown function (DUF956); Inter	86.8
PF08567	79	TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal dom	86.18
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	85.85
smart00683	55	DM16 Repeats in sea squirt COS41.4, worm R01H10.6,	83.94
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	81.7
PF11696	642	DUF3292: Protein of unknown function (DUF3292); In	81.56
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	80.09

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=100.00  E-value=4.8e-34  Score=303.24  Aligned_cols=280  Identities=22%  Similarity=0.342  Sum_probs=200.9

Q ss_pred             ceeeee--ecCCcceeEEeeeeeeecccccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccccccC-cEEEE
Q 011161          164 PLQTIF--NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP-AITII  240 (492)
Q Consensus       164 ~f~~~F--~lp~~e~l~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~~~-~i~i~  240 (492)
                      .|...+  ++|+++.|+.+|.|++.+.+++|||||+++.+|||||++|||+++.+||+.+|+.|+|+++++++| +|+|.
T Consensus       108 ~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn~i~i~  187 (590)
T KOG1032|consen  108 NLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPNAIEIT  187 (590)
T ss_pred             hhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCcceEEe
Confidence            344444  389999999999999999999999999999999999999999999999999999999999999999 89988


Q ss_pred             EecCCCCCCCCCCCCCCCceeEEEeeecchHHHHHHHHHHHHhh----hh-------hhhhhhhhhhhh--hhh--hcCC
Q 011161          241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNY----HT-------MLEAEKKEKAES--ALR--AHSS  305 (492)
Q Consensus       241 ~~~g~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~~~~~~----~~-------~~~~e~~~~~~s--~~~--~~~~  305 (492)
                      |                ++.+|+|++|++||.+|.+|..+-+..    .-       ....+++..+..  ...  ..++
T Consensus       188 t----------------~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s  251 (590)
T KOG1032|consen  188 T----------------GTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNVDNSQSPS  251 (590)
T ss_pred             c----------------CCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccccccccCCCcc
Confidence            5                456999999999999999774443321    11       000111111000  000  0000


Q ss_pred             CCCC---Ccccccccccc-cCCCC--C--CCccee------ceeee---------------eeeeecCCccCCCCCCeeE
Q 011161          306 SIGG---SRRQAKIVEET-VTKPE--K--RQPFIK------EEVLV---------------GIYNMGQWHAADEYDGQVR  356 (492)
Q Consensus       306 ~~~~---~~~~~~~~e~~-~~~~~--~--~~~~~~------~~~~~---------------~~~~~~~W~~~~~~~~~~R  356 (492)
                      ....   .+.+.....+. .....  .  .+.+++      .+.+|               ..+...+|..... +...|
T Consensus       252 ~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~-~~~~r  330 (590)
T KOG1032|consen  252 ALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRS-GILLR  330 (590)
T ss_pred             ccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCc-cceeE
Confidence            0000   00000000000 00000  0  000110      01111               1234778885444 78999


Q ss_pred             EEEEEEecCCCCCCCceeEeEEEEEEecCCCCeEEEEEEEecCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEE
Q 011161          357 EVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHF  436 (492)
Q Consensus       357 ~~~y~~~~~~~~gp~~t~~~~~q~~~~~~~~~~~vi~~~~~~~dVPygd~F~v~~r~~~~~~~~~~c~l~v~~~~~~V~~  436 (492)
                      +++|++++..++|||+|.|..+|.+.......++.|...+.+++|||+++|.|.+||+|+|+.++.|+|.|+   ++|.|
T Consensus       331 ~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~---~~V~~  407 (590)
T KOG1032|consen  331 TLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVS---TSVEW  407 (590)
T ss_pred             eccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeecce---eEEEe
Confidence            999999999999999999999999998877666888899999999999999999999999999999999999   99999


Q ss_pred             eccceeehheehhHH--HhHHHHHHHHHH
Q 011161          437 KKWCVIQFKIKTGAV--NKYKKEVELMLE  463 (492)
Q Consensus       437 ~K~t~~K~~Iek~~~--~~~~~~~~~~~~  463 (492)
                      .|++|.+.+++.++.  +.+-+.++.++.
T Consensus       408 ~~~sw~~~~~~~~~~~~k~lv~~~~~~~~  436 (590)
T KOG1032|consen  408 TKSSWDVPVSEIGSNTLKDLVEILEKLLE  436 (590)
T ss_pred             ccCchhhccccccccchhhHHHHHHHHHh
Confidence            999999998888875  334444444444

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.84  E-value=7e-20  Score=157.92  Aligned_cols=111  Identities=20%  Similarity=0.286  Sum_probs=98.3

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCC-CCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCcee
Q 011161           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~I   92 (492)
                      |+|.|+|++|++|+..+ .|++||||++.+++++.+|+++.+ +.||.|||+|.|.+.+....|.|+|||+|.+++|++|
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i   80 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI   80 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence            78999999999998877 799999999999999999999876 7999999999999976567899999999999999999


Q ss_pred             EEEEEEcc-cC--CCcccEEEEccC-----CCceEEEEEEe
Q 011161           93 GSVIVTVE-SE--GQTGAVWYTLDS-----PSGQVCLHIKT  125 (492)
Q Consensus        93 G~~~i~l~-~l--~~~~~~w~~L~~-----~~G~i~l~l~~  125 (492)
                      |.+.+++. .+  +...+.|++|.+     +.|+|++++.+
T Consensus        81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            99999996 44  455789999976     34888888764

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=1.2e-18  Score=149.58  Aligned_cols=112  Identities=24%  Similarity=0.358  Sum_probs=101.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCceeE
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG   93 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~IG   93 (492)
                      +|+|+|++|++|+..+..+.+||||++++++...+|++++++.||.|||+|.|.+.++ ...|.|+|||++..+++++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            4789999999999999889999999999999889999999999999999999998665 578999999999998999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCCCceEEEEEEee
Q 011161           94 SVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTI  126 (492)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~~G~i~l~l~~~  126 (492)
                      ++.+++.++  +...+.|++|.+..|++++.+.+.
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~~~G~~~~~~~~~  115 (116)
T cd08376          81 RCEIDLSALPREQTHSLELELEDGEGSLLLLLTLT  115 (116)
T ss_pred             EEEEeHHHCCCCCceEEEEEccCCCcEEEEEEEec
Confidence            999999987  456788999998779998887653

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.79  E-value=1.1e-18  Score=152.22  Aligned_cols=108  Identities=25%  Similarity=0.496  Sum_probs=94.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC------CCcEEEEEEEEcCCCCCC
Q 011161           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE------LPVQIIVTIYDWDIIWKS   89 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~------~~~~L~i~v~d~d~~~~d   89 (492)
                      |+|+|++|+||+.++..|.+||||++.+++.+.+|+++++++||.|||+|.|.+..      ....|.|+|||++.++++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            57999999999999999999999999999999999999999999999999999865      356799999999999899


Q ss_pred             ceeEEEEEEcccCC----CcccEEEEccCC-------CceEEEEE
Q 011161           90 TVLGSVIVTVESEG----QTGAVWYTLDSP-------SGQVCLHI  123 (492)
Q Consensus        90 d~IG~~~i~l~~l~----~~~~~w~~L~~~-------~G~i~l~l  123 (492)
                      ++||++.+++.++.    .....||+|.++       .|+|++++
T Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~  125 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI  125 (126)
T ss_pred             ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence            99999999999873    345789999752       26666554

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=3.7e-18  Score=148.18  Aligned_cols=100  Identities=21%  Similarity=0.368  Sum_probs=91.0

Q ss_pred             EEEEEEEEeec---CCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCC----
Q 011161           15 LIKLELLAAKN---LIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW----   87 (492)
Q Consensus        15 ~L~V~Vi~a~~---L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~----   87 (492)
                      .|.|+|++|+|   |+.+|..|.+||||++.+++++.+|+++.+++||.|||+|.|.+.++...|.|+|||++..+    
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            37899999999   88899999999999999999999999999999999999999999777778999999999874    


Q ss_pred             --CCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           88 --KSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        88 --~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                        ++++||++.+++..+  +.....||+|.+
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~  111 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS  111 (126)
T ss_pred             CCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence              899999999999998  445578999975

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.77  E-value=7.2e-18  Score=145.98  Aligned_cols=112  Identities=22%  Similarity=0.460  Sum_probs=98.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeE
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG   93 (492)
                      .|.|+|++|++|+..+..+.+||||++.+++ ...+|+++.++.||.|||+|.|.+.++...|.|+|||++..+++++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            3789999999999999999999999999976 567999999999999999999998776778999999999999999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCC-----CceEEEEEEee
Q 011161           94 SVIVTVESE--GQTGAVWYTLDSP-----SGQVCLHIKTI  126 (492)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~-----~G~i~l~l~~~  126 (492)
                      ++.+++.++  +...+.|++|.++     .|+|++.+++.
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~  120 (121)
T cd04042          81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT  120 (121)
T ss_pred             EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence            999999998  4566789999642     37777777654

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.77  E-value=1.7e-18  Score=152.98  Aligned_cols=98  Identities=26%  Similarity=0.447  Sum_probs=92.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCcee
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~I   92 (492)
                      -|.|+|.|++|.||..+|..+++||||++.+++++.+|+++++++||+|||.|+|.+.++...|+++|||+|.++.||||
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~m   84 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFM   84 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCccccc
Confidence            48999999999999999988999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEcccCCCcccEEE
Q 011161           93 GSVIVTVESEGQTGAVWY  110 (492)
Q Consensus        93 G~~~i~l~~l~~~~~~w~  110 (492)
                      |.++|++..+......|+
T Consensus        85 G~A~I~l~p~~~~~~~~~  102 (168)
T KOG1030|consen   85 GEATIPLKPLLEAQKMDY  102 (168)
T ss_pred             ceeeeccHHHHHHhhhhc
Confidence            999999999855555565

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.76  E-value=1.4e-17  Score=143.64  Aligned_cols=112  Identities=23%  Similarity=0.461  Sum_probs=99.7

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeE
Q 011161           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG   93 (492)
                      |.|.|+|++|++|+..+..+.+||||++.+++...+|++++++.||.|+|+|.|.+.+....|.|+|||++..+++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            57899999999999999999999999999998888999999999999999999998776788999999999888999999


Q ss_pred             EEEEEcccCCCcccEEEEccCC------CceEEEEEEe
Q 011161           94 SVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKT  125 (492)
Q Consensus        94 ~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~l~~  125 (492)
                      ++.+++.++......|+.|..+      .|+|.+++++
T Consensus        81 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          81 KVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             EEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEEe
Confidence            9999999996667899999652      4667666654

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.76  E-value=7.9e-18  Score=144.96  Aligned_cols=110  Identities=24%  Similarity=0.398  Sum_probs=94.6

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccC-CCCCCeeccEEEEEeeC-CCcEEEEEEEEcCCCCCCce
Q 011161           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV   91 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~i~~-~~~~L~i~v~d~d~~~~dd~   91 (492)
                      |.|.|+|++|++|+..+..+.+||||++.+++...+|+++. +++||.|||.|.|.+.. ....|.|+|||++..+ +++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            57999999999999999999999999999998888999875 47999999999999965 3467999999999876 899


Q ss_pred             eEEEEEEcccC--CCcccEEEEccCC---CceEEEEEE
Q 011161           92 LGSVIVTVESE--GQTGAVWYTLDSP---SGQVCLHIK  124 (492)
Q Consensus        92 IG~~~i~l~~l--~~~~~~w~~L~~~---~G~i~l~l~  124 (492)
                      ||++.+++.++  +.....|++|..+   .|+|.+++.
T Consensus        80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~  117 (118)
T cd08681          80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT  117 (118)
T ss_pred             eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEE
Confidence            99999999987  4456899999762   366666654

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.76  E-value=9.5e-18  Score=146.51  Aligned_cols=111  Identities=21%  Similarity=0.359  Sum_probs=96.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCC----CcEEEEEEEEcCCCC-CC
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIW-KS   89 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~----~~~L~i~v~d~d~~~-~d   89 (492)
                      .|.|+|++|++|++.+..+.+||||++.+++++++|+++.++.||.|||.|.|.+..+    ...|.|+|||++..+ ++
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            3789999999999999889999999999999999999999999999999999998643    246999999999887 79


Q ss_pred             ceeEEEEEEcccCC---CcccEEEEccCC------CceEEEEEEe
Q 011161           90 TVLGSVIVTVESEG---QTGAVWYTLDSP------SGQVCLHIKT  125 (492)
Q Consensus        90 d~IG~~~i~l~~l~---~~~~~w~~L~~~------~G~i~l~l~~  125 (492)
                      +|||++.+++.++.   .....||+|..+      .|++.+++.+
T Consensus        81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  125 (127)
T cd04022          81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI  125 (127)
T ss_pred             CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence            99999999999873   446789999863      4777766654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.76  E-value=1.6e-17  Score=143.82  Aligned_cols=109  Identities=27%  Similarity=0.440  Sum_probs=94.6

Q ss_pred             EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-eeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeE
Q 011161           16 IKLELLAAKNLIGAN-LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d-~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG   93 (492)
                      |.|+|++|+||+.++ ..|.+||||.+.+++. ..+|+++++++||.|||+|.|.+.+....|.|.|||++..+++++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            679999999999874 4678999999999765 46899999999999999999999765678999999999999999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCC------CceEEEEEE
Q 011161           94 SVIVTVESE--GQTGAVWYTLDSP------SGQVCLHIK  124 (492)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~------~G~i~l~l~  124 (492)
                      .+.++++++  +...+.||+|.+.      .|+|+++++
T Consensus        82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd08401          82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR  120 (121)
T ss_pred             EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence            999999998  4455789999863      488877764

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.75  E-value=1.8e-17  Score=144.65  Aligned_cols=112  Identities=24%  Similarity=0.427  Sum_probs=98.2

Q ss_pred             eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC-CCcEEEEEEEEcCCCCCCc
Q 011161           14 YLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST   90 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~--~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~-~~~~L~i~v~d~d~~~~dd   90 (492)
                      |+|.|+|++|++|+..+.  .+.+||||++.++....+|++++++.||.|+|+|.|.+.+ ....|.|+|||++..++++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            689999999999999998  8899999999999888999999999999999999999976 4678999999999988999


Q ss_pred             eeEEEEEEcccCC-----CcccEEEEccCC--------CceEEEEEEe
Q 011161           91 VLGSVIVTVESEG-----QTGAVWYTLDSP--------SGQVCLHIKT  125 (492)
Q Consensus        91 ~IG~~~i~l~~l~-----~~~~~w~~L~~~--------~G~i~l~l~~  125 (492)
                      +||++.+++.++.     .....||+|.++        .|+|++++.|
T Consensus        81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            9999999999873     335789999864        4777776643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.75  E-value=3.8e-17  Score=144.30  Aligned_cols=116  Identities=22%  Similarity=0.405  Sum_probs=100.0

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCC
Q 011161           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWK   88 (492)
Q Consensus        10 ~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~   88 (492)
                      ....|.|.|+|++|++|++.+..|.+||||++.+++...+|++++++.||.|||+|.|.+.++ ...|.|+|||++..++
T Consensus        11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~   90 (136)
T cd08375          11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP   90 (136)
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence            445689999999999999999999999999999999999999999999999999999998654 3579999999999999


Q ss_pred             CceeEEEEEEcccCC-------CcccEEEEccC-CCceEEEEEEe
Q 011161           89 STVLGSVIVTVESEG-------QTGAVWYTLDS-PSGQVCLHIKT  125 (492)
Q Consensus        89 dd~IG~~~i~l~~l~-------~~~~~w~~L~~-~~G~i~l~l~~  125 (492)
                      +++||++.+++.++.       .....|..|.. ..|+|++++.+
T Consensus        91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          91 DDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            999999999999872       22345677754 45999988765

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.74  E-value=3.6e-17  Score=146.71  Aligned_cols=112  Identities=17%  Similarity=0.339  Sum_probs=96.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCC-CCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCcee
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVL   92 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~I   92 (492)
                      .|.|+|++|++|++++..|.+||||++.++++..+|++..+ +.||.|||.|.|.+.++ ...|.|+|||++..+++++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            37899999999999999999999999999998899999876 69999999999998654 35799999999988889999


Q ss_pred             EEEEEEcccCC------CcccEEEEccCCC------------ceEEEEEEee
Q 011161           93 GSVIVTVESEG------QTGAVWYTLDSPS------------GQVCLHIKTI  126 (492)
Q Consensus        93 G~~~i~l~~l~------~~~~~w~~L~~~~------------G~i~l~l~~~  126 (492)
                      |++.++|.++.      ...++||+|....            |+|++++.+.
T Consensus        81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence            99999999883      2358999997632            6777777665

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.74  E-value=3.4e-17  Score=141.35  Aligned_cols=111  Identities=23%  Similarity=0.377  Sum_probs=95.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCc
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST   90 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd   90 (492)
                      .|.|+|++|++|+..+..+.+||||++.+.   ....+|+++.++.||.|||+|.|.+... ...|.|+|||++.. +++
T Consensus         1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~   79 (119)
T cd04036           1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD   79 (119)
T ss_pred             CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence            378999999999999988999999999985   3457999999999999999999998643 45699999999988 899


Q ss_pred             eeEEEEEEcccC--CCcccEEEEccC-CCceEEEEEEee
Q 011161           91 VLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKTI  126 (492)
Q Consensus        91 ~IG~~~i~l~~l--~~~~~~w~~L~~-~~G~i~l~l~~~  126 (492)
                      +||++.+++.++  +.....|++|.+ +.|++++++.++
T Consensus        80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~~  118 (119)
T cd04036          80 HLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLLE  118 (119)
T ss_pred             ccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEee
Confidence            999999999998  456788999987 368888877654

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.73  E-value=5.8e-17  Score=140.01  Aligned_cols=111  Identities=24%  Similarity=0.465  Sum_probs=97.2

Q ss_pred             eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC-CCcEEEEEEEEcCCC
Q 011161           14 YLIKLELLAAKNLIGANL------NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDII   86 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~------~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~-~~~~L~i~v~d~d~~   86 (492)
                      |+|.|+|++|++|+..+.      .+.+||||++.+++...+|++++++.||.|+|+|.|.+.+ ....|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            579999999999998875      3689999999999988999999999999999999999864 456899999999987


Q ss_pred             CCCceeEEEEEEcccC--CCcccEEEEccC-CCceEEEEEEe
Q 011161           87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKT  125 (492)
Q Consensus        87 ~~dd~IG~~~i~l~~l--~~~~~~w~~L~~-~~G~i~l~l~~  125 (492)
                       ++++||++.+++.++  ....+.||+|.+ ..|++++++++
T Consensus        81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence             889999999999988  344679999986 57999888764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.73  E-value=3.5e-17  Score=141.89  Aligned_cols=100  Identities=22%  Similarity=0.347  Sum_probs=87.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEe-e--C-CCcEEEEEEEEc
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-D--E-LPVQIIVTIYDW   83 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i-~--~-~~~~L~i~v~d~   83 (492)
                      .+.|.|.|++|++|++++ .+.+||||++++.     ..+++|++++++.||.|||+|.|.+ .  + ....|.|+|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            578999999999999999 8999999999985     3467899999999999999999987 2  2 245799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 011161           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~  113 (492)
                      +..+++++||++.++|.++  ......||+|.
T Consensus        91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~  122 (122)
T cd08381          91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPLG  122 (122)
T ss_pred             CCCcCCcEEEEEEEeccccccCCCccceEECc
Confidence            9999999999999999998  44467899983

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.73  E-value=2.7e-17  Score=139.91  Aligned_cols=99  Identities=17%  Similarity=0.264  Sum_probs=84.6

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEc
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW   83 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~----~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~   83 (492)
                      ...+.|+|+|++|++|+   ..|.+||||++++..    .+++|++.++|+||+|||+|.|.+..   ....|.|+|||+
T Consensus        11 ~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~   87 (118)
T cd08677          11 KQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCC   87 (118)
T ss_pred             CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence            45689999999999998   246699999999853    45689999999999999999999853   345699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 011161           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L  112 (492)
                      |+++++++||++.+++.++  ......|.+|
T Consensus        88 Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          88 DRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CCCCCCceEEEEEEccccccCCccccchhcC
Confidence            9999999999999999976  6667788765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.73  E-value=6.6e-17  Score=140.98  Aligned_cols=109  Identities=23%  Similarity=0.420  Sum_probs=93.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeE
Q 011161           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG   93 (492)
                      |.|+|++|+||+.  ..|.+||||++.++.  .+.+|+++.++.||.|||.|.|.+......|.|+|||++..+++++||
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG   78 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG   78 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence            5799999999987  678999999999973  557999999999999999999999655678999999999998999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCC-------CceEEEEEEee
Q 011161           94 SVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTI  126 (492)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~  126 (492)
                      ++.+++.++  ......|++|.++       .|++.+++.+.
T Consensus        79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~  120 (126)
T cd08678          79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFM  120 (126)
T ss_pred             EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEe
Confidence            999999997  4556789999754       36666666664

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.72  E-value=1.6e-16  Score=138.53  Aligned_cols=113  Identities=16%  Similarity=0.310  Sum_probs=98.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCcee
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~I   92 (492)
                      .++|+|+|++|++|...+..|.+||||++.++++..+|++++++.||.|||.|.|.+.+....|.|+|||++.. ++++|
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l   80 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL   80 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence            47899999999999999999999999999999999999999999999999999998877778899999999876 48999


Q ss_pred             EEEEEEcccCCCcccEEEEccC--------CCceEEEEEEee
Q 011161           93 GSVIVTVESEGQTGAVWYTLDS--------PSGQVCLHIKTI  126 (492)
Q Consensus        93 G~~~i~l~~l~~~~~~w~~L~~--------~~G~i~l~l~~~  126 (492)
                      |.+.+++.++......|++|..        ..|.|.+.+.+.
T Consensus        81 G~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~  122 (126)
T cd04046          81 GQATLSADPNDSQTLRTLPLRKRGRDAAGEVPGTISVKVTSS  122 (126)
T ss_pred             EEEEEecccCCCcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence            9999999988666778999953        236666665443

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.72  E-value=9e-17  Score=139.15  Aligned_cols=109  Identities=25%  Similarity=0.437  Sum_probs=94.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeEE
Q 011161           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGS   94 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG~   94 (492)
                      |.|+|++|++|++++..|.+||||++.+++.. .+|+++.+++||.|||.|.|.+......|.|.|||++..+++++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            78999999999999999999999999997654 59999999999999999999987666789999999999999999999


Q ss_pred             EEEEcccCC---CcccEEEEccCC------CceEEEEEE
Q 011161           95 VIVTVESEG---QTGAVWYTLDSP------SGQVCLHIK  124 (492)
Q Consensus        95 ~~i~l~~l~---~~~~~w~~L~~~------~G~i~l~l~  124 (492)
                      +.+++..+.   ...+.|++|.+.      .|++++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            999998773   236789999752      477766654

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.72  E-value=9.6e-17  Score=140.17  Aligned_cols=101  Identities=30%  Similarity=0.559  Sum_probs=91.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCC--------
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII--------   86 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~--------   86 (492)
                      .|+|+|++|++|+..|..|.+||||++.+++...+|+++.++.||.|+|+|.|.+..+...|.|+|||+|..        
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            589999999999999999999999999998888899999999999999999999876667899999999853        


Q ss_pred             ---CCCceeEEEEEEcccCCCcccEEEEccCC
Q 011161           87 ---WKSTVLGSVIVTVESEGQTGAVWYTLDSP  115 (492)
Q Consensus        87 ---~~dd~IG~~~i~l~~l~~~~~~w~~L~~~  115 (492)
                         +.+++||++.+++.++....+.|+.|.++
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~  113 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLSGEMDVWYNLEKR  113 (127)
T ss_pred             ccccCCCcceEEEEEhHHccCCCCeEEECccC
Confidence               46899999999999997777899999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.72  E-value=1.1e-16  Score=138.83  Aligned_cols=99  Identities=29%  Similarity=0.592  Sum_probs=90.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCceeEE
Q 011161           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGS   94 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~IG~   94 (492)
                      |+|+|++|++|+.++..+.+||||.+++++...+|++++++.||.|+|+|.|.+... ...|.|+|||++..+++++||+
T Consensus         2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~   81 (123)
T cd04025           2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGK   81 (123)
T ss_pred             EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEE
Confidence            789999999999999888999999999998889999999999999999999998654 4679999999999999999999


Q ss_pred             EEEEcccC--CCcccEEEEccC
Q 011161           95 VIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        95 ~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      +.+++.++  ......|+.|.+
T Consensus        82 ~~~~l~~l~~~~~~~~w~~L~~  103 (123)
T cd04025          82 VVFSIQTLQQAKQEEGWFRLLP  103 (123)
T ss_pred             EEEEHHHcccCCCCCCEEECCC
Confidence            99999988  344678999986

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.72  E-value=8.8e-17  Score=139.15  Aligned_cols=105  Identities=24%  Similarity=0.447  Sum_probs=90.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCceeEE
Q 011161           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGS   94 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~IG~   94 (492)
                      |.|+|++|++|+.+    .+||||++.+++...+|++++++.||.|||+|.|.+..+ ...|.|+|||++.. ++++||+
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~   76 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG   76 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence            78999999999887    789999999998888999999999999999999998763 56799999999977 7899999


Q ss_pred             EEEEcccCCC-------cccEEEEccCCC-----ceEEEEEEe
Q 011161           95 VIVTVESEGQ-------TGAVWYTLDSPS-----GQVCLHIKT  125 (492)
Q Consensus        95 ~~i~l~~l~~-------~~~~w~~L~~~~-----G~i~l~l~~  125 (492)
                      +.++++++..       ....||+|.+..     |+|+++|.+
T Consensus        77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            9999998822       246899998743     777777754

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.72  E-value=7.5e-17  Score=138.77  Aligned_cols=99  Identities=15%  Similarity=0.304  Sum_probs=84.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----C--eeeeeeccCCCCCCeeccEEEEEeeCC----CcEEEEEEEEc
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-----S--EKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW   83 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~--~~~~T~~~~~t~nP~W~e~f~f~i~~~----~~~L~i~v~d~   83 (492)
                      .|+|+|++|++|+..+ .|.+||||+|++.     .  ++.+|+++.+++||+|||+|.|.+...    ...|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            3899999999999988 5999999999973     2  245899999999999999999998632    23599999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      +..+++++||++.+++.++  ++....|++|..
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~  112 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR  112 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence            9888899999999999998  455678999976

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.71  E-value=1e-16  Score=142.46  Aligned_cols=103  Identities=16%  Similarity=0.287  Sum_probs=89.4

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC--C---eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEE-EcCC
Q 011161           13 AYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWDI   85 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d-~~g~sDPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~-d~d~   85 (492)
                      .+.|.|+|++|+||++.+ ..|.+||||++++.  +   .+++|+++++++||+|||+|.|.+......|.|+|| |++.
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~  107 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence            478999999999998874 57889999999983  2   256899999999999999999999855677999999 6888


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 011161           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (492)
Q Consensus        86 ~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~  115 (492)
                      ..++++||++.|+|+++  +.....||+|.++
T Consensus       108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028         108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence            88899999999999998  4556789999874

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.71  E-value=1.1e-16  Score=140.92  Aligned_cols=111  Identities=23%  Similarity=0.378  Sum_probs=94.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCC
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~   87 (492)
                      .|+|+|++|++|+.++..+.+||||++.+.+.       ..+|+++.++.||.|||+|.|.+......|.|+|||++..+
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            48899999999999998999999999998654       45899999999999999999998765678999999999999


Q ss_pred             CCceeEEEEEEcccCCC--------cccEEEEccCC------CceEEEEEEe
Q 011161           88 KSTVLGSVIVTVESEGQ--------TGAVWYTLDSP------SGQVCLHIKT  125 (492)
Q Consensus        88 ~dd~IG~~~i~l~~l~~--------~~~~w~~L~~~------~G~i~l~l~~  125 (492)
                      ++++||++.+++.++..        ....||+|.++      .|+|++++.+
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~  132 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence            99999999999998821        13589999852      3666666654

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.71  E-value=2.2e-16  Score=139.37  Aligned_cols=114  Identities=19%  Similarity=0.416  Sum_probs=96.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC----------CCcEEEEEEEEc
Q 011161           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----------LPVQIIVTIYDW   83 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~----------~~~~L~i~v~d~   83 (492)
                      +.|+|+|++|++|+++|..|.+||||++.+++...+|++++++.||.|||+|.|.+..          ....|.|+|||+
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            5789999999999999999999999999999989999999999999999999997532          124689999999


Q ss_pred             CCCCCCceeEEEEE-EcccC-----CCcccEEEEccC---CCceEEEEEEeee
Q 011161           84 DIIWKSTVLGSVIV-TVESE-----GQTGAVWYTLDS---PSGQVCLHIKTIK  127 (492)
Q Consensus        84 d~~~~dd~IG~~~i-~l~~l-----~~~~~~w~~L~~---~~G~i~l~l~~~~  127 (492)
                      +..+++++||++.+ ++..+     .....+|++|..   ..|+|.+.+++.+
T Consensus        81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~  133 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIE  133 (135)
T ss_pred             cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEE
Confidence            99999999999986 44333     245679999975   3488888888764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.70  E-value=3.7e-16  Score=141.53  Aligned_cols=112  Identities=20%  Similarity=0.383  Sum_probs=95.0

Q ss_pred             ceEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eeeeccCCCCCCee
Q 011161           13 AYLIKLELLAAKNLIGAN------------------------------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMW   61 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d------------------------------~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W   61 (492)
                      .|+|.|+|++|++|+.+|                              ..|.+||||.+.+++.+ .+|+++.++.||.|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            588999999999999987                              24668999999998755 59999999999999


Q ss_pred             ccEEEEEeeCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEe
Q 011161           62 GEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKT  125 (492)
Q Consensus        62 ~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~  125 (492)
                      ||+|.|.+..+...|.|.|||+|..+ +++||.+.+++.++  +...+.|++|...       .|+|++++++
T Consensus        86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f  157 (158)
T cd04015          86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF  157 (158)
T ss_pred             ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence            99999998776778999999999875 57999999999998  5556799999641       3667777665

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.70  E-value=1.4e-16  Score=138.71  Aligned_cols=102  Identities=22%  Similarity=0.375  Sum_probs=88.0

Q ss_pred             CceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEE
Q 011161           12 SAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~-g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d   82 (492)
                      ..+.|.|+|++|+||++++.. |.+||||++++.     ..+++|+++++++||.|||+|.|.+..   ....|.|+|||
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d   92 (125)
T cd08393          13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH   92 (125)
T ss_pred             CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence            357899999999999999975 899999999983     234689999999999999999999853   23579999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 011161           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~  113 (492)
                      ++..+++++||++.++|.++  ......||+|+
T Consensus        93 ~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          93 RDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             CCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            99999999999999999998  44557899984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.70  E-value=3.1e-16  Score=134.79  Aligned_cols=103  Identities=22%  Similarity=0.424  Sum_probs=87.7

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeE
Q 011161           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG   93 (492)
                      +.|.|+|++|++|..++   ..||||+|.+++.+.+|++.++ .||.|||.|.|.+.+....|.|+|||++.. .|+|||
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG   76 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG   76 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence            57999999999997655   4589999999999889999987 499999999999988777899999999865 899999


Q ss_pred             EEEEEcccC--C--CcccEEEEccC----CCceEEE
Q 011161           94 SVIVTVESE--G--QTGAVWYTLDS----PSGQVCL  121 (492)
Q Consensus        94 ~~~i~l~~l--~--~~~~~w~~L~~----~~G~i~l  121 (492)
                      ++.++|.++  +  ....+||+|.+    +.|++..
T Consensus        77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~~  112 (127)
T cd08394          77 TVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIVG  112 (127)
T ss_pred             EEEEEhHHcccCCCCCCCccEecChHHhccCCeEec
Confidence            999999998  2  33478999987    4465543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.69  E-value=7.3e-16  Score=134.42  Aligned_cols=110  Identities=22%  Similarity=0.340  Sum_probs=91.8

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeCCC-cEEEEEEEEcCCCCCCce
Q 011161           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDIIWKSTV   91 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~~~-~~L~i~v~d~d~~~~dd~   91 (492)
                      ..|+|+|++|++|+..   +.+||||.+.+++.. .+|++. ++.||.|||+|.|.+..+. ..+.|.|||++..+++++
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~   79 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE   79 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence            4699999999999875   478999999998754 578874 5899999999999864433 468999999999999999


Q ss_pred             eEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEeee
Q 011161           92 LGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK  127 (492)
Q Consensus        92 IG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~~  127 (492)
                      ||++.+++..+  +...+.|++|.+.       .|+|++++.+..
T Consensus        80 iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          80 IAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             EEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            99999999988  4456789999763       388999988764

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.69  E-value=2.2e-16  Score=137.49  Aligned_cols=103  Identities=17%  Similarity=0.294  Sum_probs=88.1

Q ss_pred             CCceEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~-~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~   81 (492)
                      ...+.|.|.|++|+||++.+. .+.+||||++++.     ..+++|++++++.||.|||+|.|.+..   ....|.|+||
T Consensus        12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            456789999999999998875 5789999999973     235689999999999999999999853   2456999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 011161           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (492)
Q Consensus        82 d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~  113 (492)
                      |++..+++++||++.+++..+  ......|++|.
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             ECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            999999999999999999998  45568899984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.69  E-value=5.9e-16  Score=134.86  Aligned_cols=112  Identities=25%  Similarity=0.476  Sum_probs=96.6

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCC
Q 011161           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSE---KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS   89 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~---~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~d   89 (492)
                      +.|+|+|++|++|+..+..+.+||||++.+.+.   ..+|+++.++.||.|||+|.|.+... ...|.|+|||++..+++
T Consensus         1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~   80 (126)
T cd04043           1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH   80 (126)
T ss_pred             CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence            468999999999999999999999999987643   46899999999999999999998763 56799999999998899


Q ss_pred             ceeEEEEEEcccC-----CCcccEEEEccCCCceEEEEEEee
Q 011161           90 TVLGSVIVTVESE-----GQTGAVWYTLDSPSGQVCLHIKTI  126 (492)
Q Consensus        90 d~IG~~~i~l~~l-----~~~~~~w~~L~~~~G~i~l~l~~~  126 (492)
                      ++||++.+++.++     +...+.|++|.+ .|++++.+.+.
T Consensus        81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-~g~i~l~~~~~  121 (126)
T cd04043          81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT-QGRLLLRVSME  121 (126)
T ss_pred             ceEEEEEEecCHHHcCCCCCCceEEEEcCC-CCeEEEEEEEe
Confidence            9999999999864     224568999986 79998887765

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.69  E-value=7.4e-16  Score=135.46  Aligned_cols=113  Identities=19%  Similarity=0.336  Sum_probs=98.4

Q ss_pred             ceEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEE
Q 011161           13 AYLIKLELLAAKNLIGANLN----------GTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY   81 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~----------g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~   81 (492)
                      .|.|+|+|++|++|+..+..          +.+||||++.+++.. .+|+++.++.||.|||+|.|.+.+ ...|.|.||
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v~   81 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTVF   81 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEEE
Confidence            47899999999999988863          679999999998765 589999999999999999999964 578999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCC----CcccEEEEccCCCceEEEEEEeee
Q 011161           82 DWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDSPSGQVCLHIKTIK  127 (492)
Q Consensus        82 d~d~~~~dd~IG~~~i~l~~l~----~~~~~w~~L~~~~G~i~l~l~~~~  127 (492)
                      |++..+++++||++.++|.++.    ...+.|++|.+ .|++++++.+..
T Consensus        82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~l~l~~~~~~  130 (132)
T cd04014          82 HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-QGKLHVKIELKG  130 (132)
T ss_pred             eCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC-CcEEEEEEEEec
Confidence            9998888999999999999873    34689999985 799999988763

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.69  E-value=3.1e-16  Score=136.27  Aligned_cols=103  Identities=22%  Similarity=0.418  Sum_probs=90.5

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEcC
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~d   84 (492)
                      +..+.|.|+|++|++|+.++..+.+||||++.+.   ....+|++++++.||.|+|+|.|.+...   ...|.|+|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~   92 (124)
T cd08387          13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence            3457999999999999999999999999999983   3457899999999999999999998542   457999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 011161           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (492)
Q Consensus        85 ~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~  113 (492)
                      ..+++++||++.++++++  +...+.||+|+
T Consensus        93 ~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          93 QFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            999999999999999998  55678899986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.69  E-value=2.5e-16  Score=137.60  Aligned_cols=103  Identities=18%  Similarity=0.376  Sum_probs=88.1

Q ss_pred             CCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~-g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~   81 (492)
                      ...+.|.|+|++|+||++++.. |.+||||++++.     ..++||++++++.||+|||+|.|.+...   ...|.+.||
T Consensus        12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~   91 (128)
T cd08392          12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW   91 (128)
T ss_pred             CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence            3457999999999999999875 999999999974     2356899999999999999999998542   457999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCC-----CcccEEEEcc
Q 011161           82 DWDIIWKSTVLGSVIVTVESEG-----QTGAVWYTLD  113 (492)
Q Consensus        82 d~d~~~~dd~IG~~~i~l~~l~-----~~~~~w~~L~  113 (492)
                      |++..+++++||++.|+|.++.     .....||+|.
T Consensus        92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          92 HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             eCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            9999999999999999999882     2456899983

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.68  E-value=4.7e-16  Score=135.12  Aligned_cols=102  Identities=24%  Similarity=0.426  Sum_probs=89.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCC
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDI   85 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~   85 (492)
                      ..+.|.|+|++|+||+.++..+.+||||++++.   ....+|++++++.||.|||+|.|.+..   ....|.|+|||++.
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~   93 (124)
T cd08385          14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR   93 (124)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence            457899999999999999989999999999974   235689999999999999999999853   24579999999999


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEcc
Q 011161           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (492)
Q Consensus        86 ~~~dd~IG~~~i~l~~l--~~~~~~w~~L~  113 (492)
                      .+++++||++.+++.++  +...+.|++|.
T Consensus        94 ~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          94 FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            99999999999999998  56678999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.68  E-value=3.9e-16  Score=135.73  Aligned_cols=103  Identities=21%  Similarity=0.376  Sum_probs=88.8

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeC----CCcEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY   81 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~----~~~~L~i~v~   81 (492)
                      ...+.|.|+|++|++|+..+..+.+||||++++..     .+.+|++++++.||.|||+|.|.+..    ....|.|+||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~   92 (125)
T cd04031          13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence            44578999999999999999889999999999853     45689999999999999999998533    2467999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 011161           82 DWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD  113 (492)
Q Consensus        82 d~d~~~~dd~IG~~~i~l~~l-~~~~~~w~~L~  113 (492)
                      |++..+++++||++.++|.+. ......||+|+
T Consensus        93 d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~  125 (125)
T cd04031          93 DYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ  125 (125)
T ss_pred             eCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence            999998999999999999984 44457899984

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.68  E-value=3.5e-16  Score=139.73  Aligned_cols=99  Identities=21%  Similarity=0.390  Sum_probs=85.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEee---------------CC-C
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVD---------------EL-P   73 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~---------------~~-~   73 (492)
                      .|.|+|++|++|+.  ..|.+||||++++..     .+++|+++++++||.|||+|.|.+.               +. .
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            37899999999988  578999999999865     5678999999999999999999984               11 2


Q ss_pred             cEEEEEEEEcCCCCCCceeEEEEEEcccCC---CcccEEEEccCC
Q 011161           74 VQIIVTIYDWDIIWKSTVLGSVIVTVESEG---QTGAVWYTLDSP  115 (492)
Q Consensus        74 ~~L~i~v~d~d~~~~dd~IG~~~i~l~~l~---~~~~~w~~L~~~  115 (492)
                      ..|.|.|||++..++++|||++.|++..+.   .....||+|.++
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~  123 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR  123 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence            459999999999889999999999999984   346899999874

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.68  E-value=4.5e-16  Score=131.25  Aligned_cols=97  Identities=26%  Similarity=0.320  Sum_probs=87.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCceeE
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG   93 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~IG   93 (492)
                      .|.|+|++|++|+..+..+.+||||++.++++..+|+++.++.||.|||.|.|.+.++ ...|.|+|||++.   +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            3789999999999998889999999999999999999999999999999999999764 5679999999886   78999


Q ss_pred             EEEEEcccCC----CcccEEEEccC
Q 011161           94 SVIVTVESEG----QTGAVWYTLDS  114 (492)
Q Consensus        94 ~~~i~l~~l~----~~~~~w~~L~~  114 (492)
                      ++.++|.++.    ...+.||+|.+
T Consensus        78 ~~~i~l~~l~~~~~~~~~~w~~L~~  102 (105)
T cd04050          78 SLTLPLSELLKEPDLTLDQPFPLDN  102 (105)
T ss_pred             EEEEEHHHhhccccceeeeeEecCC
Confidence            9999999872    24679999976

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.67  E-value=3.5e-16  Score=133.08  Aligned_cols=99  Identities=21%  Similarity=0.387  Sum_probs=87.6

Q ss_pred             EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeeccCCCCCCee-ccEEEEEeeCC---CcEEEEEEEEcCCCCCCc
Q 011161           16 IKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMW-GEEFNFSVDEL---PVQIIVTIYDWDIIWKST   90 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d~-~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W-~e~f~f~i~~~---~~~L~i~v~d~d~~~~dd   90 (492)
                      |.|+|++|++|+.++. .+.+||||++++++...+|+++++++||.| ||+|.|.+...   ...|.|+|||++..++++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            5799999999999884 788999999999998899999999999999 99999998642   367999999999999999


Q ss_pred             eeEEEEEEcccCCC-----cccEEEEccC
Q 011161           91 VLGSVIVTVESEGQ-----TGAVWYTLDS  114 (492)
Q Consensus        91 ~IG~~~i~l~~l~~-----~~~~w~~L~~  114 (492)
                      +||++.+++.++..     ....||+|..
T Consensus        81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            99999999999832     3678999853

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.67  E-value=3.3e-16  Score=133.44  Aligned_cols=99  Identities=18%  Similarity=0.300  Sum_probs=86.3

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeC----CCcEEEEEEEEcCC
Q 011161           14 YLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDI   85 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~-g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~----~~~~L~i~v~d~d~   85 (492)
                      |+|.|+|++|++|+..+.. +.+||||++++.   ....+|+++++++||.|||+|.|.+..    ....|.|+|||+|.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999999987 899999999984   345699999999999999999998753    24579999999999


Q ss_pred             CCCCceeEEEEEEcccCCCcccEEEEcc
Q 011161           86 IWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (492)
Q Consensus        86 ~~~dd~IG~~~i~l~~l~~~~~~w~~L~  113 (492)
                      .+++++||++.+++.++.. ...|+++.
T Consensus        81 ~~~dd~lG~~~i~l~~l~~-~~~~~~~~  107 (111)
T cd04041          81 FTADDRLGRVEIDLKELIE-DRNWMGRR  107 (111)
T ss_pred             CCCCCcceEEEEEHHHHhc-CCCCCccc
Confidence            9999999999999999953 36788874

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.67  E-value=6e-16  Score=134.15  Aligned_cols=102  Identities=14%  Similarity=0.213  Sum_probs=88.0

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~------~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~   81 (492)
                      ...+.|.|+|++|+||++.+..+.+||||++++-      ..+.+|++++++.||+|||+|.|.+..   ....|.|+||
T Consensus        11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~   90 (124)
T cd08680          11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVC   90 (124)
T ss_pred             CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence            4457899999999999999888899999999973      236789999999999999999999853   3467999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC---CCcccEEEEc
Q 011161           82 DWDIIWKSTVLGSVIVTVESE---GQTGAVWYTL  112 (492)
Q Consensus        82 d~d~~~~dd~IG~~~i~l~~l---~~~~~~w~~L  112 (492)
                      |++..+++++||++.++|.++   ......||+|
T Consensus        91 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          91 SVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             eCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            999999999999999999988   2346779876

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.66  E-value=1e-15  Score=132.78  Aligned_cols=114  Identities=20%  Similarity=0.369  Sum_probs=94.7

Q ss_pred             eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC--eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCc
Q 011161           14 YLIKLELLAAKNLIGANL-NGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~-~g~sDPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd   90 (492)
                      |.|.|+|++|++|+..+. .+.+||||.+.+++  ...+|+++.++.||.|||.|.|.+......|.|+|||++..++++
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~   81 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK   81 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence            789999999999997663 56799999999987  678999999999999999999998866778999999999988999


Q ss_pred             eeEEEEEEcccCC--Ccc-cEEEEccC---CCceEEEEEEeee
Q 011161           91 VLGSVIVTVESEG--QTG-AVWYTLDS---PSGQVCLHIKTIK  127 (492)
Q Consensus        91 ~IG~~~i~l~~l~--~~~-~~w~~L~~---~~G~i~l~l~~~~  127 (492)
                      +||.+.+++.++.  ... ..|..|..   ..|+|++.+++.+
T Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence            9999999999982  222 23454543   3588888887753

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.66  E-value=1.3e-15  Score=132.29  Aligned_cols=98  Identities=24%  Similarity=0.416  Sum_probs=86.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCC--Ccee
Q 011161           16 IKLELLAAKNLIGANLNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK--STVL   92 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~--dd~I   92 (492)
                      |+|+|++|++|+.++..+.+||||+++++ ....+|+++.+++||.|||+|.|.+.. ...|.|+|||++..++  +++|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence            78999999999999999999999999996 667799999999999999999999965 6789999999998875  5799


Q ss_pred             EEEEEEcccCC---CcccEEEEccC
Q 011161           93 GSVIVTVESEG---QTGAVWYTLDS  114 (492)
Q Consensus        93 G~~~i~l~~l~---~~~~~w~~L~~  114 (492)
                      |++.+++.++.   .....|++|..
T Consensus        81 G~~~i~l~~l~~~~~~~~~~~~l~~  105 (123)
T cd08382          81 GCVRIRANAVLPLKDTGYQRLDLRK  105 (123)
T ss_pred             eEEEEEHHHccccCCCccceeEeec
Confidence            99999999982   23467999955

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.66  E-value=9.5e-16  Score=129.87  Aligned_cols=89  Identities=18%  Similarity=0.182  Sum_probs=79.9

Q ss_pred             eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC--CCcEEEEEEEEcCCCC
Q 011161           14 YLIKLELLAAKNLIGANLN----GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDIIW   87 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~----g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~--~~~~L~i~v~d~d~~~   87 (492)
                      |+|.|+|++|++|++.+..    +.+||||++++++...+|+++++++||+|||.|.|.+..  ....|.|+|||++..+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            6899999999999988742    358999999999888899999999999999999999854  2346999999999999


Q ss_pred             CCceeEEEEEEcccC
Q 011161           88 KSTVLGSVIVTVESE  102 (492)
Q Consensus        88 ~dd~IG~~~i~l~~l  102 (492)
                      ++++||++.++|.++
T Consensus        81 ~dd~IG~~~l~L~~l   95 (108)
T cd04039          81 FNDYVATGSLSVQEL   95 (108)
T ss_pred             CCcceEEEEEEHHHH
Confidence            999999999999998

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.66  E-value=7.2e-16  Score=132.98  Aligned_cols=100  Identities=30%  Similarity=0.459  Sum_probs=85.1

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeC--CCcEEEEEEEEcC
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD   84 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~--~~~~L~i~v~d~d   84 (492)
                      ..+.|.|+|++|+||++++ .+.+||||++++..     .+++|++++++.||.|||+|.|.+..  ....|.|+|||++
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            4578999999999999998 88999999999842     35689999999999999999999853  3356889999999


Q ss_pred             CCC-CCceeEEEEEEcccC--CCcccEEEEc
Q 011161           85 IIW-KSTVLGSVIVTVESE--GQTGAVWYTL  112 (492)
Q Consensus        85 ~~~-~dd~IG~~~i~l~~l--~~~~~~w~~L  112 (492)
                      ... ++++||++.+++.++  +.....||.|
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            876 478999999999998  4445789976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.65  E-value=1.5e-15  Score=132.06  Aligned_cols=104  Identities=21%  Similarity=0.347  Sum_probs=89.6

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeeeeccCCCCCCeeccEEEEEeeC----CCcEEEEEEEEc
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDW   83 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~i~~----~~~~L~i~v~d~   83 (492)
                      ...+.|.|+|++|++|+..+..+.+||||++.+   +....+|++++++.||.|||+|.|.+..    ....|.++|||+
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~   92 (125)
T cd08386          13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence            345789999999999999998999999999998   3456799999999999999999997421    235699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      +..+++++||++.+++.++  +.....|+.|.+
T Consensus        93 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          93 DRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             CCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            9999999999999999998  556789999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.65  E-value=2.9e-15  Score=129.45  Aligned_cols=101  Identities=21%  Similarity=0.307  Sum_probs=90.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCcee
Q 011161           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~I   92 (492)
                      |.|.|+|++|++|+..+..+.+||||++.+++ ...+|+++.++.||.|||+|.|.+......|.|+|||++..+++++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            57999999999999999899999999999976 45789999999999999999999877678899999999999999999


Q ss_pred             EEEEEEcccC-CCcccEEEEccC
Q 011161           93 GSVIVTVESE-GQTGAVWYTLDS  114 (492)
Q Consensus        93 G~~~i~l~~l-~~~~~~w~~L~~  114 (492)
                      |++.+++.++ ....+.||.|..
T Consensus        81 G~~~~~l~~l~~~~~~~~~~~~~  103 (120)
T cd04045          81 GSVEINVSDLIKKNEDGKYVEYD  103 (120)
T ss_pred             eEEEEeHHHhhCCCCCceEEecC
Confidence            9999999998 445678888765

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.64  E-value=1.7e-15  Score=131.27  Aligned_cols=102  Identities=20%  Similarity=0.372  Sum_probs=88.2

Q ss_pred             CCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d-~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~   81 (492)
                      ...+.|.|+|++|+||+..+ ..+.+||||++++..     .+.+|++++++.||.|||+|.|.+...   ...|.|+||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            34578999999999999998 788999999998731     356899999999999999999998542   457999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 011161           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (492)
Q Consensus        82 d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L  112 (492)
                      |++..+++++||++.+++.++  +...+.||+|
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            999999999999999999998  5556889987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.64  E-value=2.6e-15  Score=131.24  Aligned_cols=104  Identities=17%  Similarity=0.313  Sum_probs=87.0

Q ss_pred             CCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEE-eeC---CCcEEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~-g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~-i~~---~~~~L~i~v~d   82 (492)
                      ...+.|.|+|++|+||+..+.. +.+||||++.+.   .++.+|++++++.||.|||+|.|. +..   ....|.++|||
T Consensus        13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d   92 (128)
T cd08388          13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLS   92 (128)
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence            3457999999999999998875 899999999874   345689999999999999999994 431   23469999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--C--CcccEEEEccC
Q 011161           83 WDIIWKSTVLGSVIVTVESE--G--QTGAVWYTLDS  114 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l--~--~~~~~w~~L~~  114 (492)
                      +|..+++++||++.++|.++  .  .....|.+|++
T Consensus        93 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          93 FDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             cCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            99999999999999999998  2  34567888864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.64  E-value=2.2e-15  Score=131.41  Aligned_cols=103  Identities=19%  Similarity=0.319  Sum_probs=89.0

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d   82 (492)
                      ...+.|.|+|++|+||+..+..+.+||||++.+.     ....+|++++++.||.|||+|.|.+...   ...|.+.|||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~   92 (127)
T cd04030          13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN   92 (127)
T ss_pred             CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence            4457899999999999999988999999999984     3567999999999999999999998532   3579999999


Q ss_pred             cCCC--CCCceeEEEEEEcccC--CCcccEEEEcc
Q 011161           83 WDII--WKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (492)
Q Consensus        83 ~d~~--~~dd~IG~~~i~l~~l--~~~~~~w~~L~  113 (492)
                      ++..  +++++||++.+++.++  +.....||+|.
T Consensus        93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             CCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            9875  6899999999999998  45567899983

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.64  E-value=3.5e-15  Score=129.69  Aligned_cols=102  Identities=26%  Similarity=0.455  Sum_probs=91.7

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCC-CCCCeeccEEEEEeeCC----CcEEEEEEEEcCCCCC
Q 011161           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIWK   88 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~i~~~----~~~L~i~v~d~d~~~~   88 (492)
                      |.|.|+|++|++|+..+..+.+||||++.+++...+|++..+ +.||.|||+|.|.+..+    ...|.|+|||.+..++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            579999999999999998899999999999988889998875 89999999999999765    4679999999999889


Q ss_pred             CceeEEEEEEcccC--CCcccEEEEccCC
Q 011161           89 STVLGSVIVTVESE--GQTGAVWYTLDSP  115 (492)
Q Consensus        89 dd~IG~~~i~l~~l--~~~~~~w~~L~~~  115 (492)
                      +++||++.+++.++  .+..+.|+.|.+.
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            99999999999998  4567889999874

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.64  E-value=2.9e-15  Score=129.83  Aligned_cols=104  Identities=20%  Similarity=0.324  Sum_probs=89.2

Q ss_pred             CCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEc
Q 011161           11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d-~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~   83 (492)
                      ...+.|.|+|++|++|+..+ ..+.+||||++++.   ....+|++++++.||.|||.|.|.+...   ...|.|+|||+
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   90 (123)
T cd08390          11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence            34578999999999999998 68899999999973   3456899999999999999999998542   35799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      +..+++++||++.++|.++  ......|++|++
T Consensus        91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             CcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            9988899999999999998  455579999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.63  E-value=2.7e-15  Score=127.76  Aligned_cols=99  Identities=23%  Similarity=0.480  Sum_probs=86.4

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCC-----CcEEEEEEEEcCCC
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDII   86 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~-----~~~L~i~v~d~d~~   86 (492)
                      ..+.|+|+|++|++|+    .+.+||||++.+++++++|++++++.||.|+|+|.|.+..+     ...|.|+|||++..
T Consensus         2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~   77 (111)
T cd04011           2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL   77 (111)
T ss_pred             CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence            4589999999999998    57899999999999999999999999999999999987543     24699999999999


Q ss_pred             CCCceeEEEEEEcccCC-----CcccEEEEccC
Q 011161           87 WKSTVLGSVIVTVESEG-----QTGAVWYTLDS  114 (492)
Q Consensus        87 ~~dd~IG~~~i~l~~l~-----~~~~~w~~L~~  114 (492)
                      +++++||++.++++++.     .....|++|..
T Consensus        78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            88999999999999882     23578999853

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.63  E-value=3.2e-15  Score=133.18  Aligned_cols=88  Identities=25%  Similarity=0.468  Sum_probs=84.0

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeE
Q 011161           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG   93 (492)
                      |.|.|+|++|+||+..+. +.+||||++.++++..+|++++++.||.|||+|.|.+.++...|.|+|||++.++++++||
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            789999999999999887 8999999999999999999999999999999999999888888999999999999999999


Q ss_pred             EEEEEcccC
Q 011161           94 SVIVTVESE  102 (492)
Q Consensus        94 ~~~i~l~~l  102 (492)
                      ++.+++.++
T Consensus        81 ~a~i~l~~l   89 (145)
T cd04038          81 EAEIDLEPL   89 (145)
T ss_pred             EEEEEHHHh
Confidence            999999998

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.63  E-value=4.1e-15  Score=129.29  Aligned_cols=103  Identities=19%  Similarity=0.348  Sum_probs=88.0

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEE-eeC---CCcEEEEEEEEc
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYDW   83 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~-i~~---~~~~L~i~v~d~   83 (492)
                      .....|.|+|++|+||++.+..+.+||||++.+.   ..+.+|++.++ .||+|||+|.|. +..   ....|.|+|||+
T Consensus        13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~   91 (124)
T cd08389          13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV   91 (124)
T ss_pred             CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence            4457899999999999999988999999998762   34568988887 999999999998 542   245699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      +..+++++||++.++|+++  ......|++|++
T Consensus        92 ~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          92 ERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             CCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            9999999999999999998  456788999974

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.63  E-value=7.7e-15  Score=128.09  Aligned_cols=106  Identities=20%  Similarity=0.342  Sum_probs=90.4

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCCCCCCceeEEEE
Q 011161           20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTVLGSVI   96 (492)
Q Consensus        20 Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~~~~dd~IG~~~   96 (492)
                      |++|++|+.  ..+.+||||++.+++...+|++++++.||.|||+|.|.+..   ....|.|+|||++..+++++||++.
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~   79 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT   79 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence            789999988  68899999999999888999999999999999999999864   3567999999999998999999999


Q ss_pred             EEcccC--CCcccEEEEccCC-----CceEEEEEEeee
Q 011161           97 VTVESE--GQTGAVWYTLDSP-----SGQVCLHIKTIK  127 (492)
Q Consensus        97 i~l~~l--~~~~~~w~~L~~~-----~G~i~l~l~~~~  127 (492)
                      +++.++  +.....|++|..+     .|++++++.+.+
T Consensus        80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~  117 (127)
T cd08373          80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQP  117 (127)
T ss_pred             EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeC
Confidence            999998  4556789999642     256666666554

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.62  E-value=3.4e-15  Score=133.88  Aligned_cols=101  Identities=26%  Similarity=0.572  Sum_probs=88.5

Q ss_pred             CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------eeeeeeccCCCCC
Q 011161            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----------------------------EKRFSSMVPGSRY   58 (492)
Q Consensus         8 ~~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----------------------------~~~~T~~~~~t~n   58 (492)
                      ...+..+.|.|+|++|++|.++|..|.+||||++.+..                             ...+|+++.+++|
T Consensus        22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln  101 (153)
T cd08676          22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN  101 (153)
T ss_pred             hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence            56678899999999999999999999999999999852                             1257999999999


Q ss_pred             CeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC-CCcccEEEEc
Q 011161           59 PMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTL  112 (492)
Q Consensus        59 P~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l-~~~~~~w~~L  112 (492)
                      |.|||+|.|.+.++ ...|.|+|||++    +++||++.+++.++ +...+.||+|
T Consensus       102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L  153 (153)
T cd08676         102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL  153 (153)
T ss_pred             CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence            99999999998754 567999999987    78999999999998 4567899987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.62  E-value=2.9e-15  Score=130.34  Aligned_cols=109  Identities=23%  Similarity=0.417  Sum_probs=92.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccC-CCCCCeeccEEEEEeeCC-----CcEEEEEEEEcCCCC
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVP-GSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW   87 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-~~~~T~~~~-~t~nP~W~e~f~f~i~~~-----~~~L~i~v~d~d~~~   87 (492)
                      +|+|+|++|++|+..+..+.+||||++++++ ...+|++.. ++.||.|||.|.|.+...     ...|.|+|||++..+
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            4789999999999999889999999999987 778899875 589999999999999765     567999999999888


Q ss_pred             CCceeEEEEEEcccC--CCc-----ccEEEEccCCCceEEEEE
Q 011161           88 KSTVLGSVIVTVESE--GQT-----GAVWYTLDSPSGQVCLHI  123 (492)
Q Consensus        88 ~dd~IG~~~i~l~~l--~~~-----~~~w~~L~~~~G~i~l~l  123 (492)
                      ++++||++.+++.++  +..     ...||.|..+.|+..+.|
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~  123 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVL  123 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEE
Confidence            999999999999998  221     368999987556554444

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.62  E-value=1e-15  Score=134.64  Aligned_cols=105  Identities=18%  Similarity=0.309  Sum_probs=90.8

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d   82 (492)
                      ...+.|.|+|++|++|++.+..+.+||||++.+..     ...+|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d   89 (133)
T cd08384          10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD   89 (133)
T ss_pred             CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence            34688999999999999999889999999999842     356899999999999999999998542   3579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCC
Q 011161           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSP  115 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~  115 (492)
                      ++..+++++||++.+++...+.....|+++...
T Consensus        90 ~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~  122 (133)
T cd08384          90 KDIGKSNDYIGGLQLGINAKGERLRHWLDCLKN  122 (133)
T ss_pred             CCCCCCccEEEEEEEecCCCCchHHHHHHHHhC
Confidence            999889999999999999877777889987553

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.62  E-value=3.9e-15  Score=135.40  Aligned_cols=105  Identities=21%  Similarity=0.266  Sum_probs=90.0

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeC----CCcEEEEEE
Q 011161           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTI   80 (492)
Q Consensus        10 ~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~----~~~~L~i~v   80 (492)
                      ....+.|.|+|++|+||+..+..+.+||||++++.     ...++|++++++.||.|||+|.|.+..    ....|.|+|
T Consensus        23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V  102 (162)
T cd04020          23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV  102 (162)
T ss_pred             CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence            34678999999999999999989999999999872     346799999999999999999998532    234699999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        81 ~d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      ||++..+++++||++.+++.++  ....+.|+.|..
T Consensus       103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020         103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             EeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            9999999999999999999987  345688998864

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.61  E-value=1.2e-15  Score=118.47  Aligned_cols=66  Identities=30%  Similarity=0.651  Sum_probs=48.7

Q ss_pred             ceeeeeecCCcceeEEeeeeeeec-ccccceEEEEecCeeEEEeccCCcee-EEEEeccceeeEeecc
Q 011161          164 PLQTIFNLLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ  229 (492)
Q Consensus       164 ~f~~~F~lp~~e~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~~~g~~~-~~~i~~~~I~~i~k~~  229 (492)
                      .|++.|+||.+|.|+.+|.|++.+ .++.+|+||||++++||+|+.++..+ +++|||.||.+|+|.+
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~   69 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET   69 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence            689999999999999999999999 99999999999999999999999888 9999999999999964

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.61  E-value=5.1e-15  Score=132.52  Aligned_cols=99  Identities=22%  Similarity=0.357  Sum_probs=85.2

Q ss_pred             EEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC--CCcEEEEE
Q 011161           16 IKLELLAAKNLIGANLNG--------------TSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVT   79 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d~~g--------------~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~--~~~~L~i~   79 (492)
                      |.|+|++|++|+.+|..+              .+||||+|.+++.+.+|++++++.||+|||+|.|.+..  ....|.|+
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~   81 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ   81 (151)
T ss_pred             eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence            789999999999988543              68999999999999999999999999999999998743  35679999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccC-CCc--------ccEEEEccC
Q 011161           80 IYDWDIIWKSTVLGSVIVTVESE-GQT--------GAVWYTLDS  114 (492)
Q Consensus        80 v~d~d~~~~dd~IG~~~i~l~~l-~~~--------~~~w~~L~~  114 (492)
                      |||+|..+++++||++.+++.++ ...        ...|+.|..
T Consensus        82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg  125 (151)
T cd04018          82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG  125 (151)
T ss_pred             EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence            99999999999999999999987 222        246777754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.61  E-value=1.7e-15  Score=133.58  Aligned_cols=104  Identities=22%  Similarity=0.289  Sum_probs=88.4

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d   82 (492)
                      +....|.|+|++|+||+..+..+.+||||++++..     .+++|+++++++||+|||+|.|.+..   ....|.|+|||
T Consensus        12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~   91 (136)
T cd08406          12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE   91 (136)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence            34568999999999999999899999999999732     24579999999999999999999853   24569999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 011161           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~  114 (492)
                      +|..+++++||++.+.....+....+|..+..
T Consensus        92 ~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~  123 (136)
T cd08406          92 STEDGKTPNVGHVIIGPAASGMGLSHWNQMLA  123 (136)
T ss_pred             CCCCCCCCeeEEEEECCCCCChhHHHHHHHHH
Confidence            99999999999999988777766777877654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.60  E-value=3.7e-16  Score=154.79  Aligned_cols=106  Identities=25%  Similarity=0.519  Sum_probs=93.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeccCCCCCCeeccEEEEEee--CCCcEEEEEEEEcCC
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDI   85 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~i~--~~~~~L~i~v~d~d~   85 (492)
                      ...|+|.|.+|+||.++|.+|.+||||.+.+     +..+++|++++.++||+|||+|+|.+.  +..++|.|+|||||+
T Consensus       179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr  258 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR  258 (683)
T ss_pred             CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence            4578899999999999999999999999997     234678999999999999999999984  446789999999999


Q ss_pred             CCCCceeEEEEEEcccC-CCcccEEEEccC-CCce
Q 011161           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ  118 (492)
Q Consensus        86 ~~~dd~IG~~~i~l~~l-~~~~~~w~~L~~-~~G~  118 (492)
                      .+++||+|...+.++++ ....+.||.|.+ ..|+
T Consensus       259 TsRNDFMGslSFgisEl~K~p~~GWyKlLsqeEGE  293 (683)
T KOG0696|consen  259 TSRNDFMGSLSFGISELQKAPVDGWYKLLSQEEGE  293 (683)
T ss_pred             cccccccceecccHHHHhhcchhhHHHHhhhhcCc
Confidence            99999999999999999 566789999876 4454

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.60  E-value=2.6e-15  Score=132.76  Aligned_cols=107  Identities=20%  Similarity=0.397  Sum_probs=90.8

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEc
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW   83 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~   83 (492)
                      ....|.|+|++|++|+..+..|.+||||++.+..     .+.+|++++++.||.|+|+|.|.+..   ....|.|+|||+
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~   92 (136)
T cd08404          13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS   92 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence            4578999999999999999999999999999732     24578999999999999999999853   345699999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (492)
                      +..+++++||++.+++...+.....|++|....|+
T Consensus        93 d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~  127 (136)
T cd08404          93 DRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRR  127 (136)
T ss_pred             CCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCC
Confidence            99999999999999999876667789988654444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.60  E-value=8e-15  Score=127.47  Aligned_cols=90  Identities=20%  Similarity=0.386  Sum_probs=80.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC--CCcEEEEEEEEcCCCCCC
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDIIWKS   89 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~--~~~~L~i~v~d~d~~~~d   89 (492)
                      ..+.|.|+|++|++|+ .+..+.+||||+|++++...+|++++++.||.|||+|.|....  ....|.|+|||++..+++
T Consensus        26 ~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d  104 (127)
T cd04032          26 GLATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD  104 (127)
T ss_pred             CcEEEEEEEEECCCCC-cCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence            3589999999999997 4677889999999999888999999999999999999997532  366899999999999999


Q ss_pred             ceeEEEEEEcccC
Q 011161           90 TVLGSVIVTVESE  102 (492)
Q Consensus        90 d~IG~~~i~l~~l  102 (492)
                      ++||++.++|...
T Consensus       105 d~IG~~~i~l~~~  117 (127)
T cd04032         105 DLLGTCSVVPEAG  117 (127)
T ss_pred             CeeEEEEEEecCC
Confidence            9999999999866

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=99.59  E-value=7.6e-16  Score=164.57  Aligned_cols=456  Identities=23%  Similarity=0.265  Sum_probs=283.1

Q ss_pred             CCCCCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC-CCcEEEEEEEEc
Q 011161            5 KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDW   83 (492)
Q Consensus         5 ~~~~~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~-~~~~L~i~v~d~   83 (492)
                      ++++....++......+.+.++.....++.++|+..+..............+.+|.|++.+.|.-.. +-....+..+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~e  167 (590)
T KOG1032|consen   88 KGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDE  167 (590)
T ss_pred             CcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeee
Confidence            4566667777777777777777766667788999999888877788888889999999999997532 223445555555


Q ss_pred             CCC-CCCceeEEEEEEccc-CCCcccEEEEccCCCceEE---EEEEeeeCccccccccccccchhhhhhccccCCCCccc
Q 011161           84 DII-WKSTVLGSVIVTVES-EGQTGAVWYTLDSPSGQVC---LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVV  158 (492)
Q Consensus        84 d~~-~~dd~IG~~~i~l~~-l~~~~~~w~~L~~~~G~i~---l~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~  158 (492)
                      +.. .+..-.|.+...+.- .......|..|.++.+...   +.+.-........+...+++...... ..-..+.+.+.
T Consensus       168 I~~ikk~~tag~fpn~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~-~~~~~~~~~~~  246 (590)
T KOG1032|consen  168 ITLIKKTKTAGIFPNAIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPE-VNDDQQGNVDN  246 (590)
T ss_pred             eeeeehhhhccCCCcceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCC-cCccccccccc
Confidence            432 222223332222211 2445577888887665543   22222222333333333333322111 00011234566


Q ss_pred             ccCCCceeeeeecCCcceeEEeeeeeeecccccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccccccCc--
Q 011161          159 HQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPA--  236 (492)
Q Consensus       159 ~~k~~~f~~~F~lp~~e~l~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~~~~--  236 (492)
                      .+.+..++..|++|..|.+..+++|.+.+..+++|+++++....+|++.+||..+.+...|+++..++-.+.....+.  
T Consensus       247 ~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~  326 (590)
T KOG1032|consen  247 SQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSG  326 (590)
T ss_pred             CCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCcc
Confidence            788889999999999999999999999999999999999999999999999999999999999999999887666565  


Q ss_pred             -EEEEEecCCCCCCCCCCCCCC--CceeEEEeeecchHHHHHHHHHHHHhhhhhhhhhhhhhh--------hhh-hh-hc
Q 011161          237 -ITIILRMGAGGHGVPPLGSPD--GRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKA--------ESA-LR-AH  303 (492)
Q Consensus       237 -i~i~~~~g~~~~~~~~~~~~~--~~~~~~f~sf~~rd~~~~~l~~~~~~~~~~~~~e~~~~~--------~s~-~~-~~  303 (492)
                       .....+.++++|+..+-+.-.  +...+.|..+...   ++.+........+..+.......        .+. +. ..
T Consensus       327 ~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~---~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~~  403 (590)
T KOG1032|consen  327 ILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKY---FRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVST  403 (590)
T ss_pred             ceeEeccCCccCCCcCCCccccccceeeEEeccchhh---hhhhheeccCCccccceeeeeEEEEEEecCCcceeeccee
Confidence             333333344555444433222  4456666665543   55554443333222221110000        000 00 00


Q ss_pred             CCCCCCCccccccccccc--------------CCCCCCCcceeceeeeeeeeecCCccCCCCCCeeEEEEEEEecCCCCC
Q 011161          304 SSSIGGSRRQAKIVEETV--------------TKPEKRQPFIKEEVLVGIYNMGQWHAADEYDGQVREVAFRSLCKSPIY  369 (492)
Q Consensus       304 ~~~~~~~~~~~~~~e~~~--------------~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~g  369 (492)
                      .....++.-+.-+.+...              ...++. ....+...+..+.-++|+ .+..++.+|...|+..-+.+++
T Consensus       404 ~V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~-v~~~~~~v~~~~~~~~~~~~i~  481 (590)
T KOG1032|consen  404 SVEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEEL-AKNQEKEDELTYEGSPWE-VEKPGGTVRQLSYKEVWNKPIS  481 (590)
T ss_pred             EEEeccCchhhccccccccchhhHHHHHHHHHhccHHH-HHhhcccccccccCCCcc-ccCCCceeeeeccccccccccc
Confidence            000011111111111111              000000 001122222334455899 8888999999999986778999


Q ss_pred             CCceeEeEEEEEEecCCCCeEEEEEEEecCCCCCCCeEEEEEEEEEEeeC----CCceEEEEEEeeeeEEEeccceeehh
Q 011161          370 PRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIA----ENSSTIDIKVVSAGAHFKKWCVIQFK  445 (492)
Q Consensus       370 p~~t~~~~~q~~~~~~~~~~~vi~~~~~~~dVPygd~F~v~~r~~~~~~~----~~~c~l~v~~~~~~V~~~K~t~~K~~  445 (492)
                      |....++..|......+...|++++++.++|||||++|.|..||. ....    ...+.+.++   ..|.|+|...++-.
T Consensus       482 ~~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~-~~~~~~~~v~~~~~~~~---~~~~~l~~~~~~~~  557 (590)
T KOG1032|consen  482 PDKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYR-EALDETSKVKTTLVWVS---FRIEWLKDIKMEAR  557 (590)
T ss_pred             cccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhh-hhhcccchhhhhhHHHH---HHHHHHHHHHHHHh
Confidence            999999999988776666789999999999999999999999997 1111    133444555   56667776666666


Q ss_pred             eehhHHHhHHHHHHHHHHHHHHHHh
Q 011161          446 IKTGAVNKYKKEVELMLETARSYIK  470 (492)
Q Consensus       446 Iek~~~~~~~~~~~~~~~~~~~~~~  470 (492)
                      .-+..+...++..+.++..+++.-.
T Consensus       558 ~~k~~~r~~~~~l~~~~~~l~~~~~  582 (590)
T KOG1032|consen  558 KIKQILRNDQDLLEVLFSLLEKLSQ  582 (590)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666666666666666666655544

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.59  E-value=7.3e-15  Score=129.94  Aligned_cols=99  Identities=20%  Similarity=0.411  Sum_probs=87.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeeeeccCCCCCCeeccEEEEEeeCC----------------CcE
Q 011161           16 IKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQ   75 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~----~~~~~T~~~~~t~nP~W~e~f~f~i~~~----------------~~~   75 (492)
                      |.|+|++|++|+.+ ..+.+||||++++.    ...++|++++++.||.|+|+|.|.+...                ...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999988 78999999999987    6678999999999999999999997543                456


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 011161           76 IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (492)
Q Consensus        76 L~i~v~d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~  115 (492)
                      |.|+|||++..++++|||++.+++.++  ......||+|.++
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~  121 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence            999999999988999999999999997  3456899999873

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.58  E-value=2.5e-15  Score=132.85  Aligned_cols=106  Identities=28%  Similarity=0.433  Sum_probs=90.2

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEE
Q 011161            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTI   80 (492)
Q Consensus         9 ~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v   80 (492)
                      .++..+.|.|+|++|++|+.++..+.+||||++.+.  +   ...+|+++++++||.|||+|.|.+...   ...|.|+|
T Consensus        10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v   89 (136)
T cd08402          10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            345668999999999999999999999999999984  2   345799999999999999999998532   24699999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 011161           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (492)
Q Consensus        81 ~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~  114 (492)
                      ||++..+++++||++.+++...+.....|+++..
T Consensus        90 ~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~  123 (136)
T cd08402          90 LDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLA  123 (136)
T ss_pred             EeCCCCCCCceeEEEEECCccCChHHHHHHHHHh
Confidence            9999999999999999999887766677887754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.58  E-value=1.9e-14  Score=123.25  Aligned_cols=101  Identities=26%  Similarity=0.466  Sum_probs=88.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeccEEEEEeeC-CCcEEEEEEEEcCCCCCCceeE
Q 011161           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG   93 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~i~~-~~~~L~i~v~d~d~~~~dd~IG   93 (492)
                      |+|.|++|++|+..+..+.+||||++.+.+ ...+|+++.++.+|.|+|+|.|.+.. ....+.|+|||++..+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            578999999999999888999999999965 44689999999999999999999865 4577999999999988999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCCC
Q 011161           94 SVIVTVESE--GQTGAVWYTLDSPS  116 (492)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~~  116 (492)
                      ++.+++.++  +...+.|++|.++.
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~g  105 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPLDGQG  105 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEECcCCC
Confidence            999999997  45568899998743

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.57  E-value=3.7e-14  Score=121.67  Aligned_cols=105  Identities=29%  Similarity=0.437  Sum_probs=85.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCCCCCCce
Q 011161           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTV   91 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~~~~dd~   91 (492)
                      |.|+|++|++|+..   +.+||||.+++++.. .+|+++.+ .||.|||+|.|.+..   ....|.+.+||.+....+.+
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~   77 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV   77 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence            78999999999876   789999999998754 68999988 999999999999865   23568888999887767778


Q ss_pred             eEEEEEEcccCCCcccEEEEccCC------CceEEEEEE
Q 011161           92 LGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK  124 (492)
Q Consensus        92 IG~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~l~  124 (492)
                      +|.+.+.....+...+.|++|.+.      .|+|++.+.
T Consensus        78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~  116 (117)
T cd08383          78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRAR  116 (117)
T ss_pred             EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEE
Confidence            888777666667777899999763      477777764

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.57  E-value=2.1e-14  Score=126.01  Aligned_cols=105  Identities=27%  Similarity=0.493  Sum_probs=91.0

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCC--CcEEEEEEEEcCCC
Q 011161           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDII   86 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~--~~~L~i~v~d~d~~   86 (492)
                      +.|.|+|++|++|+..+..+.+||||.+.+.     ....+|+++.++.||.|+|+|.|.+...  ...|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            7899999999999998888899999999985     2567899999999999999999998643  46799999999988


Q ss_pred             CCCceeEEEEEEcccC-CCcccEEEEccC-CCce
Q 011161           87 WKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ  118 (492)
Q Consensus        87 ~~dd~IG~~~i~l~~l-~~~~~~w~~L~~-~~G~  118 (492)
                      +++++||++.+++.++ ......||+|.. +.|+
T Consensus        93 ~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~  126 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGE  126 (131)
T ss_pred             CCcceeEEEEEeHHHhCcCccCceEECcCccccc
Confidence            8999999999999998 446678999976 3454

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.56  E-value=1.2e-14  Score=128.22  Aligned_cols=103  Identities=18%  Similarity=0.226  Sum_probs=85.5

Q ss_pred             CCceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~--~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v   80 (492)
                      +..+.|.|.|++|+||.+++.  .+.+||||++++..     .+++|+++++++||+|||+|.|.+..   ....|.|+|
T Consensus        12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V   91 (138)
T cd08407          12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEV   91 (138)
T ss_pred             CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEE
Confidence            445789999999999999983  35599999999743     24589999999999999999999854   245699999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEcc
Q 011161           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (492)
Q Consensus        81 ~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~  113 (492)
                      ||+|..+++++||++.+++...+....+|..+.
T Consensus        92 ~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml  124 (138)
T cd08407          92 LNQDSPGQSLPLGRCSLGLHTSGTERQHWEEML  124 (138)
T ss_pred             EeCCCCcCcceeceEEecCcCCCcHHHHHHHHH
Confidence            999999999999999999987666666666653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.56  E-value=2.6e-14  Score=125.79  Aligned_cols=92  Identities=22%  Similarity=0.419  Sum_probs=81.4

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeeeeeeccCCCCCCeeccEEEEEeeC-----CCcEEEEE
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVT   79 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-------~~~~~T~~~~~t~nP~W~e~f~f~i~~-----~~~~L~i~   79 (492)
                      ....|.|+|++|++|+..+..+.+||||++++.       ....+|+++++++||.|||+|.|.+..     ....|.|+
T Consensus        14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence            357899999999999999988999999999984       345799999999999999999999854     24579999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCC
Q 011161           80 IYDWDIIWKSTVLGSVIVTVESEG  103 (492)
Q Consensus        80 v~d~d~~~~dd~IG~~~i~l~~l~  103 (492)
                      |||++..+++++||++.++|.++.
T Consensus        94 V~d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          94 VKDYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             EEecCCCCCCcEeEEEEEeHHHCC
Confidence            999999998999999999999883

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.55  E-value=9.7e-15  Score=129.04  Aligned_cols=105  Identities=27%  Similarity=0.440  Sum_probs=88.7

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeccCCCCCCeeccEEEEEeeC--C-CcEEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD   82 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~i~~--~-~~~L~i~v~d   82 (492)
                      ...+.|.|+|++|+||+..+..+.+||||++.+.  +   ...+|++++++.||.|||+|.|.+..  . ...|.|+|||
T Consensus        12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d   91 (136)
T cd08405          12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence            3457899999999999999989999999999872  2   24589999999999999999998742  2 3579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCC
Q 011161           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSP  115 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~  115 (492)
                      ++..+++++||++.+++.+.+.....|+++...
T Consensus        92 ~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~  124 (136)
T cd08405          92 KDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSK  124 (136)
T ss_pred             CCCCCCCcEeEEEEECCccCCchHHHHHHHHhC
Confidence            999999999999999999876666778776543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.55  E-value=8e-15  Score=129.23  Aligned_cols=107  Identities=23%  Similarity=0.414  Sum_probs=89.3

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d   82 (492)
                      ...+.|+|+|++|++|++++..|.+||||++.+.  +   ...+|+++.++.||.|+|+|.|.+...   ...|.|+|||
T Consensus        11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d   90 (134)
T cd08403          11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence            4568899999999999999999999999999973  2   245888889999999999999987431   2459999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 011161           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G  117 (492)
                      ++..+++++||++.+++...+.....|+++....|
T Consensus        91 ~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~  125 (134)
T cd08403          91 YDRVGHNELIGVCRVGPNADGQGREHWNEMLANPR  125 (134)
T ss_pred             CCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCC
Confidence            99999999999999998866666677888754333

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.54  E-value=3.2e-14  Score=123.71  Aligned_cols=89  Identities=24%  Similarity=0.500  Sum_probs=79.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCce
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV   91 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~--~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~   91 (492)
                      +|+|.|++|++|+.++..+.+||||++.+++..  .+|+++++++||.|||+|.|.+..+ ...|.|+|||++..+++++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            478999999999999999999999999998765  4788888999999999999987543 4679999999999999999


Q ss_pred             eEEEEEEcccCC
Q 011161           92 LGSVIVTVESEG  103 (492)
Q Consensus        92 IG~~~i~l~~l~  103 (492)
                      ||++.+++.+..
T Consensus        81 iG~~~i~l~~~~   92 (124)
T cd04037          81 IGETVIDLEDRF   92 (124)
T ss_pred             eEEEEEeecccc
Confidence            999999999874

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.54  E-value=1.2e-14  Score=128.33  Aligned_cols=107  Identities=22%  Similarity=0.452  Sum_probs=87.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-C----eeeeeeccCCCCCCeeccEEEEEeeC--C-CcEEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-S----EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD   82 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-~----~~~~T~~~~~t~nP~W~e~f~f~i~~--~-~~~L~i~v~d   82 (492)
                      +..+.|.|+|++|++|+..+..|.+||||++.+. +    ..++|++++++.||.|||+|.|.+..  . ...|.|+|||
T Consensus        11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d   90 (135)
T cd08410          11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG   90 (135)
T ss_pred             CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence            4558899999999999999999999999999972 2    34689999999999999999999842  2 2369999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCC-cccEEEEccCCCc
Q 011161           83 WDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSG  117 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l~~-~~~~w~~L~~~~G  117 (492)
                      ++..+++++||++.+.....+. ...+|+.|....|
T Consensus        91 ~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~  126 (135)
T cd08410          91 HNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQR  126 (135)
T ss_pred             CCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCC
Confidence            9999999999999887766644 4577888765433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.54  E-value=3.8e-14  Score=122.42  Aligned_cols=95  Identities=16%  Similarity=0.254  Sum_probs=81.8

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeccCCCCCCeeccEEEEEee-CCCcEEEEEEEEcCC----CC
Q 011161           20 LLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI----IW   87 (492)
Q Consensus        20 Vi~a~~L~~~d~~g~sDPyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~i~-~~~~~L~i~v~d~d~----~~   87 (492)
                      .++|++|+..+..+.+||||++++...       ..+|+++++++||.|+|+|.|.+. +....|.|+|||++.    .+
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~   85 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS   85 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence            588999999999999999999998654       368999999999999999999864 345579999999997    78


Q ss_pred             CCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           88 KSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        88 ~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      ++++||++.+++.++  +.....|++|.+
T Consensus        86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          86 DHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence            999999999999998  455677888844

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.54  E-value=1.4e-13  Score=121.39  Aligned_cols=99  Identities=23%  Similarity=0.272  Sum_probs=82.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------------CeeeeeeccCCCCCCee-ccEEEEEeeCCCcEEEEEE
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-------------SEKRFSSMVPGSRYPMW-GEEFNFSVDELPVQIIVTI   80 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-------------~~~~~T~~~~~t~nP~W-~e~f~f~i~~~~~~L~i~v   80 (492)
                      +..|.+++|++|+ ++..|.+||||++++.             .+..+|+++.+++||.| ||+|.|.+.. ...|.|+|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence            4689999999998 7788999999999984             23579999999999999 9999999853 56899999


Q ss_pred             EEcCCCCC---CceeEEEEEEcccCC-----CcccEEEEccCC
Q 011161           81 YDWDIIWK---STVLGSVIVTVESEG-----QTGAVWYTLDSP  115 (492)
Q Consensus        81 ~d~d~~~~---dd~IG~~~i~l~~l~-----~~~~~w~~L~~~  115 (492)
                      ||++..+.   +++||++.+++.++.     .....|++|..+
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~  122 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR  122 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence            99875443   689999999999982     225679999763

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.53  E-value=2e-13  Score=122.33  Aligned_cols=111  Identities=14%  Similarity=0.189  Sum_probs=88.6

Q ss_pred             EEEEEEEeec--CCCCCCCCCCCcEEEEEE-----CCeeeeeeccCCCCCCeeccEEEEEeeCC---------CcEEEEE
Q 011161           16 IKLELLAAKN--LIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---------PVQIIVT   79 (492)
Q Consensus        16 L~V~Vi~a~~--L~~~d~~g~sDPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~i~~~---------~~~L~i~   79 (492)
                      ..++|..|++  |+..+..+.+||||++++     ..++.+|+++++|+||+|||+|.|.+...         ...|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            3455666666  777777889999999986     23567999999999999999999998543         2359999


Q ss_pred             EEEcCCC-CCCceeEEEEEEcccC--CCcccEEEEccC----CCceEEEEEEee
Q 011161           80 IYDWDII-WKSTVLGSVIVTVESE--GQTGAVWYTLDS----PSGQVCLHIKTI  126 (492)
Q Consensus        80 v~d~d~~-~~dd~IG~~~i~l~~l--~~~~~~w~~L~~----~~G~i~l~l~~~  126 (492)
                      |||++.+ .+|++||++.++|..+  ......|++|..    ..|.+.+.+++.
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r  137 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLR  137 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEec
Confidence            9999986 4799999999999998  445677999863    247788887765

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.53  E-value=1.7e-14  Score=126.90  Aligned_cols=107  Identities=26%  Similarity=0.447  Sum_probs=91.9

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEc
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~-----~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~   83 (492)
                      ..+.|.|+|++|++|+..+..+.+||||++.+...     ..+|+++.++.||.|||+|.|.+...   ...|.|+|||.
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~   91 (134)
T cd00276          12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK   91 (134)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence            35789999999999999988899999999998532     45899999999999999999998653   46799999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (492)
                      +..+++++||++.+++.+.+...+.|++|....|+
T Consensus        92 ~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~  126 (134)
T cd00276          92 DSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRK  126 (134)
T ss_pred             CCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCC
Confidence            98888999999999999976777889998764343

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.53  E-value=1.9e-13  Score=121.20  Aligned_cols=97  Identities=24%  Similarity=0.284  Sum_probs=82.8

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeee-eeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCC----
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW----   87 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~----   87 (492)
                      -..|.|.|++|++|+.++     +|||.|.+++... ||+++.++.||.|+|.|.|....+...+.|.||+.+...    
T Consensus        10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~   84 (146)
T cd04013          10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD   84 (146)
T ss_pred             EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence            456899999999998865     8999999999884 999999999999999999986555677999998765322    


Q ss_pred             CCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           88 KSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        88 ~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      ++++||.+.|++.++  +...+.||+|.+
T Consensus        85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~  113 (146)
T cd04013          85 KSQLIGTVNIPVTDVSSRQFVEKWYPVST  113 (146)
T ss_pred             CCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence            578999999999998  556789999976

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.52  E-value=4.9e-14  Score=122.89  Aligned_cols=103  Identities=21%  Similarity=0.336  Sum_probs=84.3

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCC-CCeeccEEEEEeeCC--CcEEEEEEE
Q 011161           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSR-YPMWGEEFNFSVDEL--PVQIIVTIY   81 (492)
Q Consensus        10 ~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~-nP~W~e~f~f~i~~~--~~~L~i~v~   81 (492)
                      .+..+.|+|.|++|+||++....+..||||+|++-     -.+++|+++++++ ||.|||+|.|.+...  ...|.|+||
T Consensus        10 ~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~   89 (135)
T cd08692          10 QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLY   89 (135)
T ss_pred             cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEE
Confidence            45678999999999999998667778999999863     1356899999995 699999999998532  345889999


Q ss_pred             EcCCCCCCceeEEEEEEcccC-CCcccEEEEc
Q 011161           82 DWDIIWKSTVLGSVIVTVESE-GQTGAVWYTL  112 (492)
Q Consensus        82 d~d~~~~dd~IG~~~i~l~~l-~~~~~~w~~L  112 (492)
                      |++..+++++||++.+..+.. +....+|.+.
T Consensus        90 d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m  121 (135)
T cd08692          90 SRSSVRRKHFLGQVWISSDSSSSEAVEQWKDT  121 (135)
T ss_pred             eCCCCcCCceEEEEEECCccCCchhhhhHHHH
Confidence            999999999999999999875 3446677665

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.52  E-value=2.5e-14  Score=126.58  Aligned_cols=105  Identities=19%  Similarity=0.337  Sum_probs=88.7

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEE
Q 011161           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (492)
Q Consensus        10 ~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v   80 (492)
                      ....+.|.|+|++|+||++++..+.+||||++.+..      .+++|++++++.||+|||+|.|.+..   ....|.|+|
T Consensus        11 ~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V   90 (138)
T cd08408          11 NALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSV   90 (138)
T ss_pred             cCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEE
Confidence            345688999999999999999999999999999731      24589999999999999999999853   245799999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCC-cccEEEEccC
Q 011161           81 YDWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDS  114 (492)
Q Consensus        81 ~d~d~~~~dd~IG~~~i~l~~l~~-~~~~w~~L~~  114 (492)
                      ||++..+++++||++.+++...+. ...+|+.+..
T Consensus        91 ~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~  125 (138)
T cd08408          91 YNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKE  125 (138)
T ss_pred             EECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHh
Confidence            999999999999999999887753 4467887754

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.52  E-value=2.5e-13  Score=118.23  Aligned_cols=99  Identities=16%  Similarity=0.269  Sum_probs=83.6

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCcee
Q 011161           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~I   92 (492)
                      ..|.|+|++|+ |...+..+.+||||.+++++. ..+|+++.++.||.|+|.|.|.+.. ...|.|+|||++..+.+++|
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~i   79 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLL   79 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEE
Confidence            46899999998 555556889999999999877 7899999999999999999999864 57899999999999899999


Q ss_pred             EEEEEEcccCC-----Cc--ccEEEEccC
Q 011161           93 GSVIVTVESEG-----QT--GAVWYTLDS  114 (492)
Q Consensus        93 G~~~i~l~~l~-----~~--~~~w~~L~~  114 (492)
                      |++.+++.++.     ..  ...|++|..
T Consensus        80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~  108 (125)
T cd04021          80 GEASLDLSDILKNHNGKLENVKLTLNLSS  108 (125)
T ss_pred             EEEEEEHHHhHhhcCCCccceEEEEEEEc
Confidence            99999999871     11  235888853

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.51  E-value=4.3e-14  Score=106.91  Aligned_cols=60  Identities=35%  Similarity=0.682  Sum_probs=56.9

Q ss_pred             ecCCcceeEEeeeeeeecccccceEEEEecCeeEEEeccCCcee-EEEEeccceeeEeecc
Q 011161          170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ  229 (492)
Q Consensus       170 ~lp~~e~l~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~-~~~i~~~~I~~i~k~~  229 (492)
                      +||++|.|+.+|.|+|.+.++++|+||+|++++||+|+.+|+.+ +++||+.||.+|+|.+
T Consensus         1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~~   61 (61)
T smart00568        1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKST   61 (61)
T ss_pred             CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEECC
Confidence            37899999999999999999999999999999999999999988 9999999999999863

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.50  E-value=2e-13  Score=116.25  Aligned_cols=96  Identities=20%  Similarity=0.330  Sum_probs=82.0

Q ss_pred             CCCCCCcEEEEEECCe-eeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC---CCc
Q 011161           31 LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQT  105 (492)
Q Consensus        31 ~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l---~~~  105 (492)
                      .+|.+||||.+.++++ ..+|+++.++.||.|||.|.|.+.+. ...|.|.|||++.. ++++||.+.++|.++   ...
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~   87 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV   87 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence            5788999999999875 46899999999999999999998764 46699999999998 899999999999987   233


Q ss_pred             ccEEEEccC-CCceEEEEEEeee
Q 011161          106 GAVWYTLDS-PSGQVCLHIKTIK  127 (492)
Q Consensus       106 ~~~w~~L~~-~~G~i~l~l~~~~  127 (492)
                      ...||+|.. +.|+|++++.+.+
T Consensus        88 ~~~w~~L~~~~~G~i~~~~~~~p  110 (111)
T cd04052          88 GQQWFPLSGNGQGRIRISALWKP  110 (111)
T ss_pred             cceeEECCCCCCCEEEEEEEEec
Confidence            578999974 4799998888765

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.49  E-value=3.8e-13  Score=116.65  Aligned_cols=100  Identities=18%  Similarity=0.253  Sum_probs=83.5

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeC----CCcEEEEEEEE
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYD   82 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~----~~~~L~i~v~d   82 (492)
                      ..+.|.|+|++|++|++.+..+.+||||++.+.     ....+|++++++.||.|+|+|.|....    ....+.|+|||
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d   92 (123)
T cd04035          13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD   92 (123)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence            457899999999999999888999999999973     235789999999999999999996322    13579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEc
Q 011161           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTL  112 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L  112 (492)
                      ++.. .+++||++.+++.++......|+.+
T Consensus        93 ~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~  121 (123)
T cd04035          93 EDRF-GNDFLGETRIPLKKLKPNQTKQFNI  121 (123)
T ss_pred             cCCc-CCeeEEEEEEEcccCCCCcceEeec
Confidence            9988 8899999999999996555555543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.48  E-value=1e-12  Score=114.51  Aligned_cols=101  Identities=22%  Similarity=0.346  Sum_probs=84.7

Q ss_pred             eEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeeeeccCCCC-CCeeccEEEEEeeCCC-cEEEEEEEEc
Q 011161           14 YLIKLELLAAKNLIGAN--LNGTSDPYAIITCG------SEKRFSSMVPGSR-YPMWGEEFNFSVDELP-VQIIVTIYDW   83 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d--~~g~sDPyv~v~~~------~~~~~T~~~~~t~-nP~W~e~f~f~i~~~~-~~L~i~v~d~   83 (492)
                      ..|+|+|++|++|+..+  ..+..||||++++.      ..+.+|+++.++. ||.|+|+|.|.+..+. ..|.|+|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            47899999999999888  57899999999983      4457899887765 9999999999987544 4599999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccCCC
Q 011161           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPS  116 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~  116 (492)
                      +.. ++++||.+.+++.++.. ...|++|..+.
T Consensus        82 ~~~-~~~~iG~~~~~l~~l~~-g~~~~~l~~~~  112 (128)
T cd00275          82 DSG-DDDFLGQACLPLDSLRQ-GYRHVPLLDSK  112 (128)
T ss_pred             CCC-CCcEeEEEEEEhHHhcC-ceEEEEecCCC
Confidence            988 89999999999999954 35788986533

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>PLN03008 Phospholipase D delta

Probab=99.47  E-value=3.4e-13  Score=146.04  Aligned_cols=118  Identities=19%  Similarity=0.346  Sum_probs=98.7

Q ss_pred             ceEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCee-ee
Q 011161           13 AYLIKLELLAAKNLIGANL------------------------------------------NGTSDPYAIITCGSEK-RF   49 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~------------------------------------------~g~sDPyv~v~~~~~~-~~   49 (492)
                      .|.|.++|.+|++|+.+|.                                          .+++||||+|.+++.+ .|
T Consensus        13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R   92 (868)
T PLN03008         13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR   92 (868)
T ss_pred             ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence            5788999999999986331                                          2467999999998764 59


Q ss_pred             eeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccC-------CCceEE
Q 011161           50 SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS-------PSGQVC  120 (492)
Q Consensus        50 T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~-------~~G~i~  120 (492)
                      |+++.+++||+|||+|.|.+.++...|.|+|||+|.++ +++||++.|++.++  +...+.|++|..       ..++|+
T Consensus        93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~  171 (868)
T PLN03008         93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIF  171 (868)
T ss_pred             EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEE
Confidence            99999999999999999999887889999999999996 58999999999998  556779999965       126788


Q ss_pred             EEEEeeeCccc
Q 011161          121 LHIKTIKLPVN  131 (492)
Q Consensus       121 l~l~~~~~~~~  131 (492)
                      +++++.+....
T Consensus       172 v~lqf~pv~~~  182 (868)
T PLN03008        172 IDMKFTPFDQI  182 (868)
T ss_pred             EEEEEEEcccc
Confidence            88888876544

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=7.5e-13  Score=137.67  Aligned_cols=156  Identities=19%  Similarity=0.250  Sum_probs=116.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCCC
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII   86 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~~   86 (492)
                      ...|.|+|++|++|+.+|..|.+||||++++.   +.+.+|++.++++||.|||+|.|.+..   ....|.+.|||+|++
T Consensus       166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drf  245 (421)
T KOG1028|consen  166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRF  245 (421)
T ss_pred             CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCc
Confidence            45789999999999999977789999999984   345689999999999999999999742   356799999999999


Q ss_pred             CCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEeeeCccccccccccccchhhhhhccccCCCCcc
Q 011161           87 WKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTV  157 (492)
Q Consensus        87 ~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~k~~~~~  157 (492)
                      +++++||++.++|..+  ......|.+|.+.       .|++.+++.+.+..-.-    .-...       +-+.+...+
T Consensus       246 sr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~l----tv~v~-------kar~L~~~~  314 (421)
T KOG1028|consen  246 SRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRL----TVVVI-------KARNLKSMD  314 (421)
T ss_pred             ccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeE----EEEEE-------EecCCCccc
Confidence            9999999999998887  3335789999762       26899998888662211    00000       112233344


Q ss_pred             cccCCCceeeeeecCCcceeEE
Q 011161          158 VHQKPGPLQTIFNLLPDEFVEL  179 (492)
Q Consensus       158 ~~~k~~~f~~~F~lp~~e~l~~  179 (492)
                      ....+++|.+..-++.+.++..
T Consensus       315 ~~~~~d~~Vk~~l~~~~~~~~k  336 (421)
T KOG1028|consen  315 VGGLSDPYVKVTLLDGDKRLSK  336 (421)
T ss_pred             CCCCCCccEEEEEecCCceeee
Confidence            5555667777776665544333

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.46  E-value=3.7e-13  Score=114.28  Aligned_cols=94  Identities=21%  Similarity=0.368  Sum_probs=78.3

Q ss_pred             EEEEEeecCCCCCCCCCCCcEEEEEECCe------eeeeeccCCCCCCeeccEEEEEeeC-----CCcEEEEEEEEcCCC
Q 011161           18 LELLAAKNLIGANLNGTSDPYAIITCGSE------KRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVTIYDWDII   86 (492)
Q Consensus        18 V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~------~~~T~~~~~t~nP~W~e~f~f~i~~-----~~~~L~i~v~d~d~~   86 (492)
                      +-.++|++|+.++..+.+||||++++...      ..+|+++++++||.|+ +|.|.+.+     ....|.|+|||++..
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            34679999999999999999999997432      4699999999999999 78877532     256799999999999


Q ss_pred             CCCceeEEEEEEcccCCCcccEEEEc
Q 011161           87 WKSTVLGSVIVTVESEGQTGAVWYTL  112 (492)
Q Consensus        87 ~~dd~IG~~~i~l~~l~~~~~~w~~L  112 (492)
                      +++++||++.+++.++......++.+
T Consensus        83 ~~d~~iG~~~~~l~~l~~~~~~~~~~  108 (110)
T cd04047          83 GKHDLIGEFETTLDELLKSSPLEFEL  108 (110)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCceEEe
Confidence            99999999999999996555555554

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.45  E-value=6.5e-13  Score=112.82  Aligned_cols=81  Identities=15%  Similarity=0.339  Sum_probs=69.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEc-------
Q 011161           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDW-------   83 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~-------   83 (492)
                      |.|+|.+|+||+     +.+||||.+.++.     ...+|+++.+++||+|||+|.|.+.. ...|.+.|||+       
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~   74 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL   74 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence            579999999995     4589999998852     34799999999999999999999964 67899999998       


Q ss_pred             CCCCCCceeEEEEEEcccC
Q 011161           84 DIIWKSTVLGSVIVTVESE  102 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l  102 (492)
                      |..++|+.+|.+.+.|+.-
T Consensus        75 d~~~~d~~~G~g~i~Ld~~   93 (118)
T cd08686          75 DGEGTDAIMGKGQIQLDPQ   93 (118)
T ss_pred             cccCcccEEEEEEEEECHH
Confidence            5667899999999988753

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.45  E-value=1.7e-13  Score=121.20  Aligned_cols=103  Identities=19%  Similarity=0.317  Sum_probs=84.3

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeC--C-CcEEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD   82 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~--~-~~~L~i~v~d   82 (492)
                      +..+.|.|+|++|+||++.+ .+.+||||++.+..     .+++|++++++.||.|||+|.|.+..  . ...|.|+|||
T Consensus        12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~   90 (137)
T cd08409          12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ   90 (137)
T ss_pred             CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence            34578999999999999998 88899999999742     35589999999999999999999853  2 3569999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      .+..+++++||++.+.....  +....+|..+..
T Consensus        91 ~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~  124 (137)
T cd08409          91 SGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS  124 (137)
T ss_pred             CCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence            99999999999999986543  444566766543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=2.5e-13  Score=139.93  Aligned_cols=114  Identities=31%  Similarity=0.522  Sum_probs=101.8

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCC------
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII------   86 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~------   86 (492)
                      ...++++|++|++|..+|..|++||||.+.+++.++||+++...+||+|+|.|.|++++...++++.|||+|..      
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr  373 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR  373 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999999999899999999998853      


Q ss_pred             -----CCCceeEEEEEEcccCCCcccEEEEccCC------CceEEEEEEee
Q 011161           87 -----WKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTI  126 (492)
Q Consensus        87 -----~~dd~IG~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~l~~~  126 (492)
                           ..|||+|+..|.+..+....+.||.|+.+      +|.|+++|.+.
T Consensus       374 qkl~resddflgqtvievrtlsgemdvwynlekrtdksavsgairlhisve  424 (1283)
T KOG1011|consen  374 QKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVE  424 (1283)
T ss_pred             HHhhhcccccccceeEEEEecccchhhhcchhhccchhhccceEEEEEEEE
Confidence                 35899999999999998888999999863      37777766644

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.42  E-value=5.6e-13  Score=156.71  Aligned_cols=112  Identities=21%  Similarity=0.331  Sum_probs=98.4

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeccEEEEEeeCCC--cEEEEEEEEcCCCCC
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELP--VQIIVTIYDWDIIWK   88 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~i~~~~--~~L~i~v~d~d~~~~   88 (492)
                      -.|.|.|+|++|+||.  +..|.+||||++.++++ +.+|++++++.||.|||.|+|.+.+++  ..|.|+|||+|.+++
T Consensus      1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200       1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred             CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence            3689999999999997  45789999999999965 778999999999999999999988765  679999999999865


Q ss_pred             CceeEEEEEEcccC--CCcccEEEEccC---CCce---EEEEEEee
Q 011161           89 STVLGSVIVTVESE--GQTGAVWYTLDS---PSGQ---VCLHIKTI  126 (492)
Q Consensus        89 dd~IG~~~i~l~~l--~~~~~~w~~L~~---~~G~---i~l~l~~~  126 (492)
                      + .||++.|++.++  ++....||+|.+   +.|+   +.+++.|.
T Consensus      2056 d-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200       2056 S-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred             C-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence            5 899999999998  566789999985   6788   88887775

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.31  E-value=1.5e-11  Score=98.45  Aligned_cols=81  Identities=26%  Similarity=0.505  Sum_probs=72.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeccEEEEEeeC-CCcEEEEEEEEcCCCCCCce
Q 011161           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV   91 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~i~~-~~~~L~i~v~d~d~~~~dd~   91 (492)
                      |+|+|++|+||+..+..+..+||+++.+..   ...+|+++.++.+|.|+++|.|.+.. ....|.|+|||++..+++++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            789999999999988888999999999876   56899999999999999999999743 34459999999999988999


Q ss_pred             eEEEE
Q 011161           92 LGSVI   96 (492)
Q Consensus        92 IG~~~   96 (492)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd00030 C2 C2 domain

Probab=99.17  E-value=2.6e-10  Score=93.05  Aligned_cols=97  Identities=30%  Similarity=0.574  Sum_probs=84.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeccEEEEEeeC-CCcEEEEEEEEcCCCCCCceeE
Q 011161           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG   93 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~i~~-~~~~L~i~v~d~d~~~~dd~IG   93 (492)
                      |.|.|++|++|.........+|||.+.+.. ...+|.+..++.||.|++.|.|.+.. ....|.|+||+.+..+.+.+||
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            468999999998877778899999999987 77899999999999999999999876 5677999999999887789999


Q ss_pred             EEEEEcccCC---CcccEEEEc
Q 011161           94 SVIVTVESEG---QTGAVWYTL  112 (492)
Q Consensus        94 ~~~i~l~~l~---~~~~~w~~L  112 (492)
                      .+.+++..+.   .....|++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          81 EVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEeHHHhhhcCCcCcceecC
Confidence            9999999874   445677764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.14  E-value=1.1e-10  Score=122.47  Aligned_cols=114  Identities=24%  Similarity=0.389  Sum_probs=101.3

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCcee
Q 011161           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~I   92 (492)
                      ..|.|.|.+|+||++.+..|.+||||.|.++++. .||.++.+++.|-|.|+|.|.++..-..|.|-|||.| +++|+.|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I   83 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII   83 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence            4588999999999999999999999999998654 6999999999999999999999876778999999999 8999999


Q ss_pred             EEEEEEcccC--CCcccEEEEccC------CCceEEEEEEeeeC
Q 011161           93 GSVIVTVESE--GQTGAVWYTLDS------PSGQVCLHIKTIKL  128 (492)
Q Consensus        93 G~~~i~l~~l--~~~~~~w~~L~~------~~G~i~l~l~~~~~  128 (492)
                      |.+.|.=.++  .++.+.|+.|.+      -.|++++++.+...
T Consensus        84 GKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~  127 (800)
T KOG2059|consen   84 GKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEA  127 (800)
T ss_pred             ceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccc
Confidence            9999988887  467899999976      24999999887654

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.14  E-value=4.8e-10  Score=91.91  Aligned_cols=89  Identities=24%  Similarity=0.494  Sum_probs=78.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCc
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE---KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST   90 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~---~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd   90 (492)
                      .|.|.|++|++|......+..+|||.+.+...   ..+|+++.++.||.|+++|.|.+..+ ...|.|+|||.+..+.+.
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~   80 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD   80 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence            36899999999988876678999999998764   68999999889999999999999776 778999999999887789


Q ss_pred             eeEEEEEEcccCC
Q 011161           91 VLGSVIVTVESEG  103 (492)
Q Consensus        91 ~IG~~~i~l~~l~  103 (492)
                      ++|.+.+++.++.
T Consensus        81 ~~G~~~~~l~~~~   93 (101)
T smart00239       81 FIGQVTIPLSDLL   93 (101)
T ss_pred             eeEEEEEEHHHcc
Confidence            9999999998873

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02223 phosphoinositide phospholipase C

Probab=99.06  E-value=2e-09  Score=112.77  Aligned_cols=105  Identities=18%  Similarity=0.288  Sum_probs=85.0

Q ss_pred             ceEEEEEEEEeecCCC-----CCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCCCcE-EEEEEE
Q 011161           13 AYLIKLELLAAKNLIG-----ANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ-IIVTIY   81 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~-----~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~-L~i~v~   81 (492)
                      ...|.|+|+.|++++.     .+.....||||+|.+.     ....+|.+..++.||.|||+|.|.+..+... |.|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            4679999999998741     1234568999999974     2345787778889999999999999776654 899999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (492)
Q Consensus        82 d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (492)
                      |+|..+.++|+|++.+|+..+..+ -++++|..+.|.
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~G-yR~VpL~~~~g~  523 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEG-IRAVPLYDERGK  523 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCC-ceeEeccCCCcC
Confidence            999988899999999999999765 578888776665

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.06  E-value=1.1e-09  Score=95.55  Aligned_cols=87  Identities=17%  Similarity=0.277  Sum_probs=73.5

Q ss_pred             EEEEEEEeecCCCCC--CCCC--CCcEEEEEECC---eeeeeeccCCCCC--CeeccEEEEEeeC---------------
Q 011161           16 IKLELLAAKNLIGAN--LNGT--SDPYAIITCGS---EKRFSSMVPGSRY--PMWGEEFNFSVDE---------------   71 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d--~~g~--sDPyv~v~~~~---~~~~T~~~~~t~n--P~W~e~f~f~i~~---------------   71 (492)
                      |+|.|..|++++..+  ..|.  +||||+..+..   .+++|.+.++++|  |.||+.|.|.+..               
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            789999999965443  3664  99999999854   4678999999999  9999999987643               


Q ss_pred             ---------CCcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 011161           72 ---------LPVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (492)
Q Consensus        72 ---------~~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l  102 (492)
                               ....|.++|||.|.+++|++||.+++++..+
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l  121 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSIL  121 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhc
Confidence                     1245999999999999999999999999988

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=1.1e-09  Score=114.16  Aligned_cols=91  Identities=27%  Similarity=0.447  Sum_probs=78.6

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeC--C-CcEEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD   82 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~--~-~~~L~i~v~d   82 (492)
                      +..+.|+|.|++|+||+.++..+.+||||++++-     ..+++|.+.++++||+|||+|.|.+..  . ...|.|+|||
T Consensus       295 p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d  374 (421)
T KOG1028|consen  295 PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWD  374 (421)
T ss_pred             cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEE
Confidence            4468999999999999999999999999999963     234579999999999999999998852  2 3459999999


Q ss_pred             cCCCCCCceeEEEEEEccc
Q 011161           83 WDIIWKSTVLGSVIVTVES  101 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~  101 (492)
                      +|.++.+++||++.+....
T Consensus       375 ~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  375 HDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             cccccccceeeEEEecCCC
Confidence            9999999999998887775

>PLN02952 phosphoinositide phospholipase C

Probab=98.92  E-value=1.1e-08  Score=109.53  Aligned_cols=105  Identities=16%  Similarity=0.266  Sum_probs=84.3

Q ss_pred             ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCCC-cEEEEEE
Q 011161           13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTI   80 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~------d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~~-~~L~i~v   80 (492)
                      ...|.|+|+.|++|+..      +.....||||+|.+-     ..+.+|+++.++.||.|+|+|.|.+..+. ..+.|.|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46799999999987531      112345999999873     34568999999999999999999987654 3489999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (492)
Q Consensus        81 ~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (492)
                      ||+|..+.++|+|++.+|+..+..+ .+|++|..+.|.
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~G-yR~VpL~~~~G~  585 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPG-IRSVPLHDKKGE  585 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCC-ceeEeCcCCCCC
Confidence            9999988899999999999999765 469999765443

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.88  E-value=1.7e-08  Score=107.80  Aligned_cols=105  Identities=15%  Similarity=0.166  Sum_probs=84.2

Q ss_pred             ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCCCc-EEEEEE
Q 011161           13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPV-QIIVTI   80 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~------d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~-~L~i~v   80 (492)
                      ..+|.|+|+.|++++..      +.....||||+|.+-     ..+.+|++..++.||.|+|+|.|.+..+.. .|+|.|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46799999999987421      223457999999973     334688888889999999999999876554 489999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (492)
Q Consensus        81 ~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (492)
                      +|+|..+.++|+|+..+|+..+..+ -+.++|..+.|.
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~G-yR~V~L~~~~G~  584 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQG-IHAVPLFNRKGV  584 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCc-cceEeccCCCcC
Confidence            9999988999999999999999765 457788776654

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.88  E-value=6.7e-09  Score=114.95  Aligned_cols=104  Identities=23%  Similarity=0.382  Sum_probs=89.5

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeccEEEEEee-CCCcEEEEEEEEcCCCCC
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDIIWK   88 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~i~-~~~~~L~i~v~d~d~~~~   88 (492)
                      .+.|-|+|.+..|.||+..|.+|.+||||++.+++. .++|+++++++||+|||++.+++. .....+.+.|+|||...+
T Consensus      1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~k 1116 (1227)
T COG5038        1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEK 1116 (1227)
T ss_pred             cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCC
Confidence            457889999999999999999999999999999876 579999999999999999999986 446779999999999999


Q ss_pred             CceeEEEEEEcccCCCcc-cE-EEEccC
Q 011161           89 STVLGSVIVTVESEGQTG-AV-WYTLDS  114 (492)
Q Consensus        89 dd~IG~~~i~l~~l~~~~-~~-w~~L~~  114 (492)
                      ++.||.+.++|..+.+.. .. -.+|..
T Consensus      1117 nd~lg~~~idL~~l~~~~~~n~~i~ldg 1144 (1227)
T COG5038        1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDG 1144 (1227)
T ss_pred             ccccccccccHhhcCcCCccceeeeccC
Confidence            999999999999984332 23 344544

>PLN02270 phospholipase D alpha

Probab=98.88  E-value=2.2e-08  Score=109.17  Aligned_cols=117  Identities=17%  Similarity=0.306  Sum_probs=95.3

Q ss_pred             ceEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCee-eeeeccCCC-CCCeeccEEEEEeeCC
Q 011161           13 AYLIKLELLAAKNLIGAN------------------LNGTSDPYAIITCGSEK-RFSSMVPGS-RYPMWGEEFNFSVDEL   72 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d------------------~~g~sDPyv~v~~~~~~-~~T~~~~~t-~nP~W~e~f~f~i~~~   72 (492)
                      .|.|.|+|++|++|+..+                  ..+.+||||.|.+++.+ .||+++.+. .||.|+|+|.+.+...
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            578999999999998631                  12467999999998766 499999885 6999999999999888


Q ss_pred             CcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC-------ceEEEEEEeeeCcc
Q 011161           73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-------GQVCLHIKTIKLPV  130 (492)
Q Consensus        73 ~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~~-------G~i~l~l~~~~~~~  130 (492)
                      ...+.|+|.|.|.++.. +||.+.+|+.++  +...+.|+++....       .+|++++++.+...
T Consensus        87 ~~~v~f~vkd~~~~g~~-~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~  152 (808)
T PLN02270         87 ASNIIFTVKDDNPIGAT-LIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK  152 (808)
T ss_pred             cceEEEEEecCCccCce-EEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence            89999999999988654 999999999998  55688999986522       24667777766443

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.84  E-value=4.8e-08  Score=104.22  Aligned_cols=105  Identities=14%  Similarity=0.247  Sum_probs=83.5

Q ss_pred             ceEEEEEEEEeecCC----CC--CCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCCCc-EEEEEE
Q 011161           13 AYLIKLELLAAKNLI----GA--NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPV-QIIVTI   80 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~----~~--d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~-~L~i~v   80 (492)
                      ...|.|+|+.|++++    ..  +.....||||+|.+.     ..+.+|+++.++.||.|+|+|.|.+..+.. .|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            457999999998753    11  123457999999973     345689999999999999999999876554 489999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (492)
Q Consensus        81 ~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (492)
                      ||+|..+.++|+|+..+|+..+..+ -+.++|..+.|.
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~G-yR~V~L~~~~g~  567 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQG-IRAFPLHSRKGE  567 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCc-cceEEccCCCcC
Confidence            9999888899999999999999665 557788765554

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.83  E-value=1.5e-08  Score=108.35  Aligned_cols=105  Identities=21%  Similarity=0.352  Sum_probs=84.3

Q ss_pred             EEEEEEEEeecCCCC-CC---CCCCCcEEEEEECC-----eeeeeecc-CCCCCCeeccEEEEEeeCCCcE-EEEEEEEc
Q 011161           15 LIKLELLAAKNLIGA-NL---NGTSDPYAIITCGS-----EKRFSSMV-PGSRYPMWGEEFNFSVDELPVQ-IIVTIYDW   83 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~-d~---~g~sDPyv~v~~~~-----~~~~T~~~-~~t~nP~W~e~f~f~i~~~~~~-L~i~v~d~   83 (492)
                      +|.|.|+.|+++.+. +.   ...+||||.|.+.+     ...+|+++ .++-||.|+|+|.|.+..|... |+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            899999999976543 22   35689999999743     34589955 6679999999999999876654 89999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccCCCceEE
Q 011161           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC  120 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~i~  120 (492)
                      |..++|+|+|+..+|+..+.++ -+-++|.++.|+..
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~G-yRhVpL~~~~G~~~  732 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQG-YRHVPLLSREGEAL  732 (746)
T ss_pred             CCCCcccccceeeccHHHhhCc-eeeeeecCCCCccc
Confidence            9999999999999999999765 45667777666643

>PLN02228 Phosphoinositide phospholipase C

Probab=98.79  E-value=6.9e-08  Score=102.78  Aligned_cols=105  Identities=12%  Similarity=0.194  Sum_probs=82.7

Q ss_pred             ceEEEEEEEEeecCCC---CC---CCCCCCcEEEEEEC-----CeeeeeeccCCCCCCee-ccEEEEEeeCCCc-EEEEE
Q 011161           13 AYLIKLELLAAKNLIG---AN---LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMW-GEEFNFSVDELPV-QIIVT   79 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~---~d---~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W-~e~f~f~i~~~~~-~L~i~   79 (492)
                      ...|+|+|++|++|+.   .+   .....||||+|.+.     ..+.+|+++.++.||.| +|+|.|.+..+.. .|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            3479999999998731   11   23348999999973     33468999988899999 9999999876543 48999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161           80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (492)
Q Consensus        80 v~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (492)
                      |+|+|..+.++|+|++.+|+..+..+ -+.++|.++.|+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~G-YR~VpL~~~~G~  547 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSG-VRAVRLHDRAGK  547 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCC-eeEEEccCCCCC
Confidence            99999888899999999999999664 567788765544

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.79  E-value=1.4e-09  Score=114.11  Aligned_cols=121  Identities=26%  Similarity=0.484  Sum_probs=96.6

Q ss_pred             CCCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------C-------e------------------eeeeeccCC
Q 011161            7 DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------S-------E------------------KRFSSMVPG   55 (492)
Q Consensus         7 ~~~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~------~-------~------------------~~~T~~~~~   55 (492)
                      .+...+.+.+.|.+.+|++|..+|.+|.+|||+...+-      +       +                  .+-|++.+.
T Consensus       107 ~~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~  186 (1103)
T KOG1328|consen  107 KQNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKK  186 (1103)
T ss_pred             cCCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccc
Confidence            34456677788899999999999999999999987541      0       0                  012788899


Q ss_pred             CCCCeeccEEEEEeeCC-CcEEEEEEEEcCCC---------------------------------CC---CceeEEEEEE
Q 011161           56 SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDII---------------------------------WK---STVLGSVIVT   98 (492)
Q Consensus        56 t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~---------------------------------~~---dd~IG~~~i~   98 (492)
                      |+||.|+|.|.|.+.+. ...+.+-+||+|.-                                 +.   |||+|++.+|
T Consensus       187 TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNip  266 (1103)
T KOG1328|consen  187 TLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIP  266 (1103)
T ss_pred             cCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence            99999999999999875 45699999998831                                 22   7999999999


Q ss_pred             cccC-CCcccEEEEccCCC------ceEEEEEEeee
Q 011161           99 VESE-GQTGAVWYTLDSPS------GQVCLHIKTIK  127 (492)
Q Consensus        99 l~~l-~~~~~~w~~L~~~~------G~i~l~l~~~~  127 (492)
                      +.++ ..+.++||+|++++      |++++.+.+..
T Consensus       267 l~EiP~~Gld~WFkLepRS~~S~VqG~~~LklwLsT  302 (1103)
T KOG1328|consen  267 LAEIPPDGLDQWFKLEPRSDKSKVQGQVKLKLWLST  302 (1103)
T ss_pred             hhcCCcchHHHHhccCcccccccccceEEEEEEEee
Confidence            9999 56679999999843      88888877653

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.79  E-value=2.4e-08  Score=82.24  Aligned_cols=82  Identities=16%  Similarity=0.268  Sum_probs=69.7

Q ss_pred             EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-eeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCce
Q 011161           16 IKLELLAAKNLIGAN---LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d---~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~   91 (492)
                      |.|+|.+|+++...+   +.+.+||||.|.++.. +.||++   +.||.|||+|.|.+. ....+.+.|||... ...-.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence            578999999999888   6788999999999876 678887   479999999999995 47889999999854 35568


Q ss_pred             eEEEEEEcccC
Q 011161           92 LGSVIVTVESE  102 (492)
Q Consensus        92 IG~~~i~l~~l  102 (492)
                      ||...+.++++
T Consensus        76 i~llW~~~sdi   86 (109)
T cd08689          76 VGLLWLRLSDI   86 (109)
T ss_pred             eeeehhhHHHH
Confidence            89988888876

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.79  E-value=3.5e-08  Score=109.37  Aligned_cols=120  Identities=17%  Similarity=0.344  Sum_probs=96.9

Q ss_pred             CCCCceEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCC
Q 011161            9 QTNSAYLIKLELLAAKNLIGAN--LNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI   85 (492)
Q Consensus         9 ~~~~~~~L~V~Vi~a~~L~~~d--~~g~sDPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~   85 (492)
                      ++..-|+|.|+|.+|++|...+  ..+..|||+.+.... ...+|++.+++.||+|||+|.+.+......|.++|||.+.
T Consensus       431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~  510 (1227)
T COG5038         431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS  510 (1227)
T ss_pred             cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence            7788999999999999999888  589999999998643 3459999999999999999999988778899999999999


Q ss_pred             CCCCceeEEEEEEcccCC---CcccEEEEccC---CCceEEEEEEeeeC
Q 011161           86 IWKSTVLGSVIVTVESEG---QTGAVWYTLDS---PSGQVCLHIKTIKL  128 (492)
Q Consensus        86 ~~~dd~IG~~~i~l~~l~---~~~~~w~~L~~---~~G~i~l~l~~~~~  128 (492)
                      ..+|+.+|.+.++|..+.   .....-+.+..   ..|+++-.+++.+.
T Consensus       511 ~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~  559 (1227)
T COG5038         511 FKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPV  559 (1227)
T ss_pred             cCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecc
Confidence            999999999999998772   11222333322   24777666666654

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.68  E-value=1.1e-08  Score=107.61  Aligned_cols=91  Identities=25%  Similarity=0.405  Sum_probs=79.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeccCCCCCCeeccEEEEEeeCC-----CcEEEEE
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIVT   79 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-------~~~~T~~~~~t~nP~W~e~f~f~i~~~-----~~~L~i~   79 (492)
                      +.-.|.|.|+.|+++.+.|.+|.+||||+|.+..       ..++|+++.+|+||+|+|+|.|.+...     ..-+.|+
T Consensus       945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen  945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred             cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEE
Confidence            3446788899999999999999999999999863       345899999999999999999998532     2238999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccC
Q 011161           80 IYDWDIIWKSTVLGSVIVTVESE  102 (492)
Q Consensus        80 v~d~d~~~~dd~IG~~~i~l~~l  102 (492)
                      |+|+|-+..+||-|++.+.|+++
T Consensus      1025 VMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred             eeccceecccccchHHHHhhCCC
Confidence            99999999999999999999988

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.64  E-value=1e-07  Score=98.14  Aligned_cols=114  Identities=18%  Similarity=0.317  Sum_probs=95.2

Q ss_pred             ceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeeccCCCCCCeec-cEEEEEeeCC---CcEEEEEEEEcCCCC
Q 011161           13 AYLIKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDEL---PVQIIVTIYDWDIIW   87 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~-~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~-e~f~f~i~~~---~~~L~i~v~d~d~~~   87 (492)
                      .|.|.|+|..||+|+-+|. ....|.||.+.+.+...+|.+-.+++||.|| +.|.|++.+.   ..+|.+++.|+|..+
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys   81 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS   81 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence            3678999999999999986 4568999999999999999999999999998 6689998642   356999999999999


Q ss_pred             CCceeEEEEEEcccC----------C--CcccEEEEccC----CCceEEEEEEee
Q 011161           88 KSTVLGSVIVTVESE----------G--QTGAVWYTLDS----PSGQVCLHIKTI  126 (492)
Q Consensus        88 ~dd~IG~~~i~l~~l----------~--~~~~~w~~L~~----~~G~i~l~l~~~  126 (492)
                      .+|-||.+.|+++.+          +  --...|+++..    -.|+|.+.+++.
T Consensus        82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvd  136 (1169)
T KOG1031|consen   82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVD  136 (1169)
T ss_pred             cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEe
Confidence            999999999999976          1  12457999865    248887777644

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.61  E-value=3e-07  Score=98.04  Aligned_cols=114  Identities=14%  Similarity=0.239  Sum_probs=86.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----Ceee-eeeccCCCCCCeec-cEEEEEeeCCCcE-EEEEEEEcC
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKR-FSSMVPGSRYPMWG-EEFNFSVDELPVQ-IIVTIYDWD   84 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~-~T~~~~~t~nP~W~-e~f~f~i~~~~~~-L~i~v~d~d   84 (492)
                      ...|.|.|+.||+|+..+ -|...|||.|.+-     ..++ +|.+..+++||+|+ |.|+|++.+|.-. |+|.|+|.|
T Consensus      1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred             ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence            457899999999998654 5567799999862     3344 45556888999999 9999999887654 999999999


Q ss_pred             CCCCCceeEEEEEEcccCCCcccEEEEccCC------CceEEEEEEeeeC
Q 011161           85 IIWKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTIKL  128 (492)
Q Consensus        85 ~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~l~~~~~  128 (492)
                      .++...|||++..|+..+..+ -+-++|..+      ...+.+-+...+.
T Consensus      1143 mfs~~~FiaqA~yPv~~ik~G-fRsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG-FRSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred             ccCCcceeeeeecchhhhhcc-ceeeecccCchhhhhhhhheeeeEeccc
Confidence            999988999999999998443 344566441      2334555555543

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.36  E-value=1.2e-06  Score=92.59  Aligned_cols=121  Identities=25%  Similarity=0.430  Sum_probs=87.7

Q ss_pred             CCCCCCCceEEEEEE---------------EEeecCCCCCCCCCCCcEEEEEECCee----eeeeccCCCCCCeeccEEE
Q 011161            6 GDPQTNSAYLIKLEL---------------LAAKNLIGANLNGTSDPYAIITCGSEK----RFSSMVPGSRYPMWGEEFN   66 (492)
Q Consensus         6 ~~~~~~~~~~L~V~V---------------i~a~~L~~~d~~g~sDPyv~v~~~~~~----~~T~~~~~t~nP~W~e~f~   66 (492)
                      .|++++=.|.+++.+               +.++.+.+.. ++.+|||+.+...+..    .+|++.+.+.+|.|+|.|.
T Consensus       108 VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~  186 (800)
T KOG2059|consen  108 VDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFY  186 (800)
T ss_pred             cCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhhee
Confidence            466666666655443               3444444443 6679999999875443    4899999999999999999


Q ss_pred             EEeeCC----------------CcEEEEEEEE-cCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC-----------
Q 011161           67 FSVDEL----------------PVQIIVTIYD-WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-----------  116 (492)
Q Consensus        67 f~i~~~----------------~~~L~i~v~d-~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~~-----------  116 (492)
                      |.+...                ...|++.+|+ ++....++|+|++.+++..+  ......||.|.++.           
T Consensus       187 f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~l  266 (800)
T KOG2059|consen  187 FEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDL  266 (800)
T ss_pred             eeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCc
Confidence            987432                3458999999 66666799999999999987  34557899998721           


Q ss_pred             ceEEEEEEeee
Q 011161          117 GQVCLHIKTIK  127 (492)
Q Consensus       117 G~i~l~l~~~~  127 (492)
                      |.+.+.+.+..
T Consensus       267 Gslrl~v~y~~  277 (800)
T KOG2059|consen  267 GSLRLNVTYTE  277 (800)
T ss_pred             cceeeeEEeee
Confidence            55566666553

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.19  E-value=9.7e-07  Score=96.51  Aligned_cols=94  Identities=22%  Similarity=0.450  Sum_probs=82.0

Q ss_pred             CCC-CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEc
Q 011161            8 PQT-NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDW   83 (492)
Q Consensus         8 ~~~-~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~--~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~   83 (492)
                      ++. +-..+++|++++|-+|.+.|.+|.+|||+.+.+++..  -+...+.+++||+|.+.|.+...-+ ...+.++|||+
T Consensus       606 ~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~  685 (1105)
T KOG1326|consen  606 PKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDH  685 (1105)
T ss_pred             cccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEe
Confidence            444 4467889999999999999999999999999998876  4778889999999999999887654 34589999999


Q ss_pred             CCCCCCceeEEEEEEccc
Q 011161           84 DIIWKSTVLGSVIVTVES  101 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~  101 (492)
                      |..+.|+.||+..++|..
T Consensus       686 D~~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  686 DLEAQDEKIGETTIDLEN  703 (1105)
T ss_pred             ecccccchhhceehhhhh
Confidence            999999999999999875

>PLN02352 phospholipase D epsilon

Probab=98.14  E-value=2e-05  Score=86.26  Aligned_cols=111  Identities=12%  Similarity=0.149  Sum_probs=82.3

Q ss_pred             CceEEEEEEEEeecCCCC----CC-CCCCCcEEEEEECCeee-eeeccCCCCCCeeccEEEEEeeCCC-cEEEEEEEEcC
Q 011161           12 SAYLIKLELLAAKNLIGA----NL-NGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWD   84 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~----d~-~g~sDPyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~i~~~~-~~L~i~v~d~d   84 (492)
                      -.|+|.++|.+|+-+...    +. ....||||.|.+++.+. ||   .+..||.|+|+|.+.+.... ..+.|+|.|  
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence            368999999999844322    11 12239999999987654 77   55669999999999997766 679999977  


Q ss_pred             CCCCCceeEEEEEEcccC--CCc-ccEEEEccCCC-----c-eEEEEEEeeeCcc
Q 011161           85 IIWKSTVLGSVIVTVESE--GQT-GAVWYTLDSPS-----G-QVCLHIKTIKLPV  130 (492)
Q Consensus        85 ~~~~dd~IG~~~i~l~~l--~~~-~~~w~~L~~~~-----G-~i~l~l~~~~~~~  130 (492)
                         ...+||.+.+|+.++  +.. .+.|+++....     | ++++++++.+...
T Consensus        83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  134 (758)
T PLN02352         83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAEL  134 (758)
T ss_pred             ---CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence               257999999999998  323 78999986522     3 5666666665543

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=98.13  E-value=1.8e-06  Score=90.99  Aligned_cols=103  Identities=21%  Similarity=0.342  Sum_probs=85.8

Q ss_pred             cccCCCceeeeeecCCcceeEEeeeeeeec---ccccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeeccccccc
Q 011161          158 VHQKPGPLQTIFNLLPDEFVELSYSCVIER---SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFIN  234 (492)
Q Consensus       158 ~~~k~~~f~~~F~lp~~e~l~~~~~c~l~~---~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~~  234 (492)
                      .+.++..| .+|+||  |.|..+..|.++.   ....+|+||++.+++||.|...+ ...+++|+..|..|++.+....+
T Consensus         6 ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~~   81 (671)
T KOG4347|consen    6 ARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSLF   81 (671)
T ss_pred             hhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCccccc
Confidence            35577889 999999  9999999998877   45688999999999999998865 58999999999999999965556


Q ss_pred             C-cEEEEEecCCCCCCCCCCCCCCCceeEEEeeecchHHHHHHHHH
Q 011161          235 P-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR  279 (492)
Q Consensus       235 ~-~i~i~~~~g~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~  279 (492)
                      + .|.+.|+               +...+.|..+..|+..+--+..
T Consensus        82 ~~~i~~~~~---------------~~~~~~f~~~~~r~~~~~k~~~  112 (671)
T KOG4347|consen   82 TQLISLFTS---------------NMVGMRFGGLTERLKLLSKLHL  112 (671)
T ss_pred             hhhhHHhhc---------------CcceEEecchhhHHHHHHHHhc
Confidence            6 6777775               4578999999999987664433

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=97.99  E-value=5.8e-06  Score=91.66  Aligned_cols=102  Identities=20%  Similarity=0.280  Sum_probs=84.3

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEE-ee--CC-CcEEEEEEEEc
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFS-VD--EL-PVQIIVTIYDW   83 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~-i~--~~-~~~L~i~v~d~   83 (492)
                      +++|.|-|.-|++|+-..-+..+||||+.++.     ..+++|+++++|.||.|||..... +.  .. .++|.++||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            56888999999999766657789999999984     235689999999999999998876 22  22 46799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      +....+.|+|.+.++|.++  ......||.|..
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence            9988899999999999987  344458999965

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=7e-06  Score=80.15  Aligned_cols=99  Identities=18%  Similarity=0.281  Sum_probs=78.8

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEcC
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~d   84 (492)
                      ..-+.|++++|..|...|.++.+||||..++.     ..+.+|.+.+++++|.|++.|.+.+...   ...+.|++||++
T Consensus       232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~  311 (362)
T KOG1013|consen  232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYD  311 (362)
T ss_pred             CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccC
Confidence            34577999999999999999999999999874     2245799999999999999999988532   345899999999


Q ss_pred             CCCCCceeEEEEEEcccCCCcccEEEE
Q 011161           85 IIWKSTVLGSVIVTVESEGQTGAVWYT  111 (492)
Q Consensus        85 ~~~~dd~IG~~~i~l~~l~~~~~~w~~  111 (492)
                      .....+++|-+...+-..+.-...|+.
T Consensus       312 ~G~s~d~~GG~~~g~~rr~~v~~h~gr  338 (362)
T KOG1013|consen  312 IGKSNDSIGGSMLGGYRRGEVHKHWGR  338 (362)
T ss_pred             CCcCccCCCcccccccccchhhcCccc
Confidence            887889999877766655444444543

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.54  E-value=0.00015  Score=61.93  Aligned_cols=97  Identities=20%  Similarity=0.315  Sum_probs=72.8

Q ss_pred             EEEEEEEeecCCCCC-------------CCCCCCcEEEEEE----CCeeeeeeccCCCCCCeeccEEEEEee--------
Q 011161           16 IKLELLAAKNLIGAN-------------LNGTSDPYAIITC----GSEKRFSSMVPGSRYPMWGEEFNFSVD--------   70 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d-------------~~g~sDPyv~v~~----~~~~~~T~~~~~t~nP~W~e~f~f~i~--------   70 (492)
                      |.|.|++|.+|+...             ..-.-++||.+.+    +++.++|+++.++-.|.|+..++|.+.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            467888888887532             1223689999985    345678999999999999999999763        


Q ss_pred             C--------CCcEEEEEEEEcCCC----------CCCceeEEEEEEcccC---CCcccEEEEc
Q 011161           71 E--------LPVQIIVTIYDWDII----------WKSTVLGSVIVTVESE---GQTGAVWYTL  112 (492)
Q Consensus        71 ~--------~~~~L~i~v~d~d~~----------~~dd~IG~~~i~l~~l---~~~~~~w~~L  112 (492)
                      +        ....+.|+||+.+.-          .+|-.||.+.||+.++   ..+...||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1        123489999997642          3466899999999998   5667889975

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.38  E-value=3.6e-05  Score=84.55  Aligned_cols=104  Identities=17%  Similarity=0.214  Sum_probs=84.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEee----------CCCcEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD----------ELPVQIIVTI   80 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~----------~~~~~L~i~v   80 (492)
                      ...+.++++|.+|+.|...|..+.+|||+.+..-++.+.|.++.+++||.|+++..|.-.          .....+.+++
T Consensus       203 ~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~  282 (1105)
T KOG1326|consen  203 VIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEV  282 (1105)
T ss_pred             hhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEe
Confidence            345667888899999999999999999999999999999999999999999999988521          1234488999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC-CCcccEEEEccC
Q 011161           81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (492)
Q Consensus        81 ~d~d~~~~dd~IG~~~i~l~~l-~~~~~~w~~L~~  114 (492)
                      ||.++.+.++|+|.......-+ ....-.|+++-.
T Consensus       283 yd~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~r  317 (1105)
T KOG1326|consen  283 YDLDRSGINEFKGRKKQRPYVMVQCPALKWVPTMR  317 (1105)
T ss_pred             ehhhhhchHHhhcccccceEEEecCCccceEEeec
Confidence            9999999999999976554433 345667888754

>PF14470 bPH_3: Bacterial PH domain

Probab=97.24  E-value=0.0079  Score=49.17  Aligned_cols=85  Identities=19%  Similarity=0.210  Sum_probs=66.5

Q ss_pred             cCCcceeEEeeeeeeec-ccccceEEEEecCeeEEEecc-CCceeEEEEeccceeeEeecccccccCcEEEEEecCCCCC
Q 011161          171 LLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA-FSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGH  248 (492)
Q Consensus       171 lp~~e~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~~-~g~~~~~~i~~~~I~~i~k~~~~~~~~~i~i~~~~g~~~~  248 (492)
                      |.++|.+.....|.+.. .....|-+.+|+.++-|.+.- ++......|||++|.+|+..+.. +...|.|.+       
T Consensus         1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~-~~~~i~i~~-------   72 (96)
T PF14470_consen    1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI-LGGKITIET-------   72 (96)
T ss_pred             CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc-cccEEEEEE-------
Confidence            45789999988898764 334459999999999999865 67788899999999999999754 345788887       


Q ss_pred             CCCCCCCCCCceeEEEeeecchHHH
Q 011161          249 GVPPLGSPDGRVRYKFASFWNRNHA  273 (492)
Q Consensus       249 ~~~~~~~~~~~~~~~f~sf~~rd~~  273 (492)
                               +.+++.|.++ ..+.+
T Consensus        73 ---------~~~~~~i~~i-~k~~~   87 (96)
T PF14470_consen   73 ---------NGEKIKIDNI-QKGDV   87 (96)
T ss_pred             ---------CCEEEEEEEc-CHHHH
Confidence                     3468899888 55544

>PLN02964 phosphatidylserine decarboxylase

Probab=97.18  E-value=0.00062  Score=74.19  Aligned_cols=83  Identities=14%  Similarity=0.274  Sum_probs=68.7

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEE-EEEECCeeeeeeccCCCCCCeeccEEEEEeeCC-CcEEEEEEEEcCCCCCCc
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYA-IITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST   90 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv-~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~-~~~L~i~v~d~d~~~~dd   90 (492)
                      .|.+.+++++|+    ++   ..|||. .+.++.+..+|.+.++|.||+||+...|.+... .....+.|||++++++++
T Consensus        53 ~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~  125 (644)
T PLN02964         53 SGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT  125 (644)
T ss_pred             cCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence            578889999987    33   258875 566788999999999999999999988887532 333699999999999999


Q ss_pred             eeEEEEEEcccC
Q 011161           91 VLGSVIVTVESE  102 (492)
Q Consensus        91 ~IG~~~i~l~~l  102 (492)
                      .+|.+++++...
T Consensus       126 lv~~~e~~~t~f  137 (644)
T PLN02964        126 LVGYCELDLFDF  137 (644)
T ss_pred             hhhheeecHhhc
Confidence            999999988766

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.00011  Score=72.09  Aligned_cols=92  Identities=18%  Similarity=0.206  Sum_probs=74.8

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEe--eCC--CcEEEEEEEEc
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDW   83 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i--~~~--~~~L~i~v~d~   83 (492)
                      ...+.+++..|++|++++.++..|||+++.+..     .+.+|++..+++||.|+|+.....  .+.  ...+.+.+.|.
T Consensus        92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn  171 (362)
T KOG1013|consen   92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN  171 (362)
T ss_pred             hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence            346789999999999999999999999998742     235788999999999999877654  221  23377889999


Q ss_pred             CCCCCCceeEEEEEEcccCCC
Q 011161           84 DIIWKSTVLGSVIVTVESEGQ  104 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l~~  104 (492)
                      +.+..++++|+..+++..+.+
T Consensus       172 ~~~~~~~sqGq~r~~lkKl~p  192 (362)
T KOG1013|consen  172 DKKTHNESQGQSRVSLKKLKP  192 (362)
T ss_pred             cccccccCcccchhhhhccCh
Confidence            999999999999988887743

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.05  E-value=0.00083  Score=70.59  Aligned_cols=83  Identities=24%  Similarity=0.313  Sum_probs=67.3

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEEC--C----eeeeeeccCCCCCCeeccEEEEEe-----eCCCcEEEEEEEEcCCCCC
Q 011161           20 LLAAKNLIGANLNGTSDPYAIITCG--S----EKRFSSMVPGSRYPMWGEEFNFSV-----DELPVQIIVTIYDWDIIWK   88 (492)
Q Consensus        20 Vi~a~~L~~~d~~g~sDPyv~v~~~--~----~~~~T~~~~~t~nP~W~e~f~f~i-----~~~~~~L~i~v~d~d~~~~   88 (492)
                      .++|++|.++|..+++|||..++--  .    ...+|++++++++|.|.+ |.+..     .++...+.+.+||++..++
T Consensus       142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence            3668999999999999999988732  1    234899999999999954 44433     3456779999999999999


Q ss_pred             CceeEEEEEEcccCC
Q 011161           89 STVLGSVIVTVESEG  103 (492)
Q Consensus        89 dd~IG~~~i~l~~l~  103 (492)
                      +++||++..++.++.
T Consensus       221 ~~~ig~~~tt~~~~~  235 (529)
T KOG1327|consen  221 HDLIGKFQTTLSELQ  235 (529)
T ss_pred             cCceeEecccHHHhc
Confidence            999999999998873

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=96.96  E-value=0.0015  Score=54.88  Aligned_cols=87  Identities=22%  Similarity=0.344  Sum_probs=60.2

Q ss_pred             eEEeeeeeeec-ccccceEEEEecCeeEEEec---------------cCCceeEEEEeccceeeEeecccccccC-cEEE
Q 011161          177 VELSYSCVIER-SFLYHGRMYVSAWHICFHSN---------------AFSRQMKVIIPIGDIDEIQRSQHAFINP-AITI  239 (492)
Q Consensus       177 l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~---------------~~g~~~~~~i~~~~I~~i~k~~~~~~~~-~i~i  239 (492)
                      ++-.+.|.+.. ....+|.+.++.+++.|..+               .-.......+|++||..|.+..-. +-+ ||+|
T Consensus         2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyl-lr~~AlEi   80 (106)
T PF14844_consen    2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYL-LRDTALEI   80 (106)
T ss_dssp             -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEET-TEEEEEEE
T ss_pred             EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhc-CcceEEEE
Confidence            45678999877 56678999999999999976               223345678999999999987633 334 9999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeEEEeeecchHHHHHHH
Q 011161          240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQL  277 (492)
Q Consensus       240 ~~~~g~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l  277 (492)
                      .+.+|             ...-+.|.+...||++|+.|
T Consensus        81 F~~dg-------------~s~f~~F~~~~~R~~v~~~l  105 (106)
T PF14844_consen   81 FFSDG-------------RSYFFNFESKKERDEVYNKL  105 (106)
T ss_dssp             EETTS--------------EEEEE-SSHHHHHHHHCCS
T ss_pred             EEcCC-------------cEEEEEcCCHHHHHHHHHhh
Confidence            99775             23344555667788887644

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.94  E-value=0.0038  Score=65.96  Aligned_cols=101  Identities=17%  Similarity=0.287  Sum_probs=77.3

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeccCCCCCCeeccEEEEEeeCC----CcEEEEEEE
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIY   81 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-------~~~~T~~~~~t~nP~W~e~f~f~i~~~----~~~L~i~v~   81 (492)
                      ...++|.|+.|.+|+=.. .|.-.|||.+.+-+       .+..|++..++-.|.+||+|.|-+...    .-.|.+.|-
T Consensus      1124 ehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred             cceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence            346889999999996543 67778999998632       233578888888999999999988542    234888887


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        82 d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      |+--...|..+|-+.++|.++  ...-..|++|..
T Consensus      1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred             hheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence            776555578999999999998  344568999975

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.00064  Score=67.80  Aligned_cols=103  Identities=14%  Similarity=0.234  Sum_probs=81.9

Q ss_pred             CceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEE-cC
Q 011161           12 SAYLIKLELLAAKNLIGANL-NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD-WD   84 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~-~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d-~d   84 (492)
                      ..|.+.|.|++|++|..+.- ...++|||+|++-.     .+.+|+...++.+|.+.....|.-..+...|.+++|. +.
T Consensus       267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg  346 (405)
T KOG2060|consen  267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG  346 (405)
T ss_pred             ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence            46889999999999976643 34789999999732     2347888889999988888888766666779999994 66


Q ss_pred             CCCCCceeEEEEEEcccCC---CcccEEEEccC
Q 011161           85 IIWKSTVLGSVIVTVESEG---QTGAVWYTLDS  114 (492)
Q Consensus        85 ~~~~dd~IG~~~i~l~~l~---~~~~~w~~L~~  114 (492)
                      ++.+..|+|-+++-+.+++   .....||+|.+
T Consensus       347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg  379 (405)
T KOG2060|consen  347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG  379 (405)
T ss_pred             ccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence            7777889999999999983   24578999976

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=96.86  E-value=0.0031  Score=66.43  Aligned_cols=153  Identities=12%  Similarity=0.140  Sum_probs=97.6

Q ss_pred             eeeeccCCCCCCeeccEEEEEee-CCCcEEEEEEEEcCCC----CCCceeEEEEEEcccCCCccc--EEEEccC----CC
Q 011161           48 RFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDII----WKSTVLGSVIVTVESEGQTGA--VWYTLDS----PS  116 (492)
Q Consensus        48 ~~T~~~~~t~nP~W~e~f~f~i~-~~~~~L~i~v~d~d~~----~~dd~IG~~~i~l~~l~~~~~--~w~~L~~----~~  116 (492)
                      .+|+++.+.+||.|.+.|.+.+. +.-+.+++.++|.+..    ...+|+|++...+..+-....  .-+.+.+    ..
T Consensus        43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~  122 (529)
T KOG1327|consen   43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGS  122 (529)
T ss_pred             cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCc
Confidence            48999999999999999988764 3456799999997743    457899999999998722111  1122221    34


Q ss_pred             ceEEEEEEeeeCccccccccccccchhhhhhccccCCCCcccccCCCceeeeeecC---------CcceeEEeeeeeeec
Q 011161          117 GQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLL---------PDEFVELSYSCVIER  187 (492)
Q Consensus       117 G~i~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~k~~~f~~~F~lp---------~~e~l~~~~~c~l~~  187 (492)
                      |.|.++.+-.    +..+....+...+       .++.++++..++.+|..+++.-         ..|.+....+..|..
T Consensus       123 g~iti~aee~----~~~~~~~~~~~~~-------~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~  191 (529)
T KOG1327|consen  123 GTITISAEED----ESDNDVVQFSFRA-------KNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP  191 (529)
T ss_pred             ccEEEEeecc----cccCceeeeeeee-------eecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc
Confidence            5554444322    2222222222221       4567889999999998888653         445777777777766


Q ss_pred             -ccccc----eEEEEecCeeEEEeccCCc
Q 011161          188 -SFLYH----GRMYVSAWHICFHSNAFSR  211 (492)
Q Consensus       188 -~~~~~----G~lyis~~~~cF~s~~~g~  211 (492)
                       .++.+    +..-.+...+|++.+..|.
T Consensus       192 ~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  192 FSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             cccchhhhcccCCCCceEEEEeccCCCCC
Confidence             55544    3334555577777665553

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=96.83  E-value=0.0016  Score=51.91  Aligned_cols=93  Identities=18%  Similarity=0.221  Sum_probs=64.5

Q ss_pred             EEEEEEeecCCCCCCC-CCCCcEEE--EEECCe-eeeeeccCCCCCCeeccEEEEEee--C-CCcEEEEEEEEcCCCCCC
Q 011161           17 KLELLAAKNLIGANLN-GTSDPYAI--ITCGSE-KRFSSMVPGSRYPMWGEEFNFSVD--E-LPVQIIVTIYDWDIIWKS   89 (492)
Q Consensus        17 ~V~Vi~a~~L~~~d~~-g~sDPyv~--v~~~~~-~~~T~~~~~t~nP~W~e~f~f~i~--~-~~~~L~i~v~d~d~~~~d   89 (492)
                      -++++.|++|.-...- ....-|++  +.+.+. ..+|....+..||.|.|+|.|.+.  . ....|.|.|+.  ...+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            4788999998543321 12223443  334443 458888888999999999999874  2 24568899988  44567


Q ss_pred             ceeEEEEEEcccCC-CcccEEEE
Q 011161           90 TVLGSVIVTVESEG-QTGAVWYT  111 (492)
Q Consensus        90 d~IG~~~i~l~~l~-~~~~~w~~  111 (492)
                      +.||.+.+.+++++ +....|.+
T Consensus        80 e~iG~~sL~l~s~geeE~~HW~e  102 (103)
T cd08684          80 RTIGECSLSLRTLSTQETDHWLE  102 (103)
T ss_pred             ceeeEEEeecccCCHHHhhhhhc
Confidence            89999999999995 34556754

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=95.32  E-value=0.021  Score=57.88  Aligned_cols=113  Identities=10%  Similarity=0.123  Sum_probs=78.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEE---C--CeeeeeeccCCCCCCeeccEEEEEeeCC---C---------cEE
Q 011161           14 YLIKLELLAAKNLIGANLNGTSDPYAIITC---G--SEKRFSSMVPGSRYPMWGEEFNFSVDEL---P---------VQI   76 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~---~--~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~---------~~L   76 (492)
                      -.|.+.|+++++++.....--.|-|+.+..   .  .++.+|.+++++.+|.|+|.|.+.+...   .         .-+
T Consensus       367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~  446 (523)
T KOG3837|consen  367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK  446 (523)
T ss_pred             hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence            356677888888765432223567887764   2  2345789999999999999999988541   1         128


Q ss_pred             EEEEEEcCCCC-CCceeEEEEEEcccCCC--cccEEEEccC----CCceEEEEEEee
Q 011161           77 IVTIYDWDIIW-KSTVLGSVIVTVESEGQ--TGAVWYTLDS----PSGQVCLHIKTI  126 (492)
Q Consensus        77 ~i~v~d~d~~~-~dd~IG~~~i~l~~l~~--~~~~w~~L~~----~~G~i~l~l~~~  126 (492)
                      +|++|+...+. +|.++|.+.+.+..+..  .....++|..    -.|.+.+.+++.
T Consensus       447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             eEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence            99999987654 48899999999998832  2345667654    136666666554

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=94.99  E-value=0.065  Score=59.09  Aligned_cols=99  Identities=19%  Similarity=0.226  Sum_probs=71.8

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeccCC-CCCCeeccE-EEEEe-eCC-CcEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPG-SRYPMWGEE-FNFSV-DEL-PVQIIVT   79 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-------~~~~T~~~~~-t~nP~W~e~-f~f~i-~~~-~~~L~i~   79 (492)
                      .=.+++.|+||+|+-|..+.    ...||.|.+-+       ...+|+++.+ +.||+|+|. |.|.- .-+ -..|+|.
T Consensus       700 vIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia  775 (1189)
T KOG1265|consen  700 VIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA  775 (1189)
T ss_pred             eEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence            33678999999999997665    45899998621       3357888754 699999865 77752 222 3459999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161           80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (492)
Q Consensus        80 v~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (492)
                      ||+..    ..|||+-.+|++.+..+ .+.+.|..+.++
T Consensus       776 vyeEg----gK~ig~RIlpvd~l~~G-Yrhv~LRse~Nq  809 (1189)
T KOG1265|consen  776 VYEEG----GKFIGQRILPVDGLNAG-YRHVCLRSESNQ  809 (1189)
T ss_pred             eeccC----CceeeeeccchhcccCc-ceeEEecCCCCC
Confidence            99865    36999999999999654 556677664443

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=93.78  E-value=0.98  Score=40.50  Aligned_cols=92  Identities=18%  Similarity=0.194  Sum_probs=65.9

Q ss_pred             CCceEEEEEEEEeecCCCCCC--CCCCCcEEEEE--ECCeeeeeeccCCCCCCeeccEEEEEeeCC--------------
Q 011161           11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAIIT--CGSEKRFSSMVPGSRYPMWGEEFNFSVDEL--------------   72 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~--~g~sDPyv~v~--~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~--------------   72 (492)
                      +....|.+.|..++-...--.  .+..+..+.++  +.+++++|+.+..+.+|.|+|.|.|+++..              
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            445678899988864322111  14455555554  578999999999999999999999998532              


Q ss_pred             CcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 011161           73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (492)
Q Consensus        73 ~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l  102 (492)
                      ...+++.|...|..+...++|.-.++...+
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~v  115 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKV  115 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHH
Confidence            234788887777766667888888877766

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.76  E-value=1.1  Score=40.57  Aligned_cols=99  Identities=18%  Similarity=0.261  Sum_probs=65.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeee----eeeccCCCCCCeeccEEEEEe--eCC--CcEEEEEEEEcC
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD   84 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~--~~~~~----~T~~~~~t~nP~W~e~f~f~i--~~~--~~~L~i~v~d~d   84 (492)
                      .++|+|+++.++...+   .+|-||.+.+  ++...    .|..+.. .++.|||...|.+  .+.  ...|.|+||+..
T Consensus         9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~   84 (158)
T cd08398           9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK   84 (158)
T ss_pred             CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence            5789999999886543   4678887754  43322    3443433 6799999998876  333  346999999976


Q ss_pred             CCC----CCceeEEEEEEcccCCCcccEEEEccCCCceEEEEEEe
Q 011161           85 IIW----KSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKT  125 (492)
Q Consensus        85 ~~~----~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~i~l~l~~  125 (492)
                      ...    ....||.+.++|-+...      .|  +.|...+.+..
T Consensus        85 ~~~~~k~~~~~iG~~ni~LFd~~~------~L--r~G~~~L~lW~  121 (158)
T cd08398          85 GRKGAKEEHCPLAWGNINLFDYTD------TL--VSGKMALNLWP  121 (158)
T ss_pred             cccCCCCceEEEEEEEEEEECCCC------hh--hCCCEEEEEEc
Confidence            421    23569999999887532      12  35766666654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.61  E-value=0.54  Score=43.15  Aligned_cols=101  Identities=23%  Similarity=0.249  Sum_probs=65.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeeccCCCCCCeeccEEEEEe--eCC--CcEEEEEEEEcC
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD   84 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~f~i--~~~--~~~L~i~v~d~d   84 (492)
                      .++|+|+.+.+|...  ....+-||.+.+  ++..    ..|+.+..+.++.|+|.+.|.+  .+.  ...|.|+||+..
T Consensus         9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            578999999999752  234566776543  4432    2455555456799999999976  343  345999999965


Q ss_pred             CCC----------------CCceeEEEEEEcccCCCcccEEEEccCCCceEEEEEEe
Q 011161           85 IIW----------------KSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKT  125 (492)
Q Consensus        85 ~~~----------------~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~i~l~l~~  125 (492)
                      ...                ....||.+.++|-+...      .|  +.|...+.+..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~------~L--r~G~~~L~lW~  135 (173)
T cd08693          87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG------QL--KTGDHTLYMWT  135 (173)
T ss_pred             ccccccccccccccccccCcceEEEEEeEEEEcccc------hh--hcCCeEEEecC
Confidence            322                24678888888877532      12  35666666653

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=93.57  E-value=1.1  Score=45.52  Aligned_cols=110  Identities=19%  Similarity=0.263  Sum_probs=82.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC--------CCcEEEEEEEEcC-CC
Q 011161           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--------LPVQIIVTIYDWD-II   86 (492)
Q Consensus        16 L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~--------~~~~L~i~v~d~d-~~   86 (492)
                      +.|.|++|+|.+...   ...-.+...+++....|..+..+-.|.|+..+..+++.        ...+|++++|..| ..
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~   78 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST   78 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence            568899999987652   23445667789999999998889999999998887641        2456999999988 55


Q ss_pred             CCCceeEEEEEEcccC---C----CcccEEEEccCC-------CceEEEEEEeeeC
Q 011161           87 WKSTVLGSVIVTVESE---G----QTGAVWYTLDSP-------SGQVCLHIKTIKL  128 (492)
Q Consensus        87 ~~dd~IG~~~i~l~~l---~----~~~~~w~~L~~~-------~G~i~l~l~~~~~  128 (492)
                      +..+.||.+-++|...   .    .....||+|..-       +-++.+.+.+...
T Consensus        79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~  134 (340)
T PF12416_consen   79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD  134 (340)
T ss_pred             CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence            6678999999999876   2    245689999662       2345566655543

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=93.18  E-value=1.2  Score=35.98  Aligned_cols=83  Identities=12%  Similarity=0.242  Sum_probs=56.8

Q ss_pred             CCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeEEEEEEcccCCCcccEEEEcc
Q 011161           35 SDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (492)
Q Consensus        35 sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~  113 (492)
                      ++-.+++.+++.. .+|.-... .+..|++.|.++++. .++|+|.||-.|.-   ..-|-..+.|.+...  ..-.+|.
T Consensus         9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~R---slCav~~lrLEd~~~--~~~~~le   81 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDWR---SLCAVKFLKLEDERH--EVQLDME   81 (98)
T ss_pred             cceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecch---hhhhheeeEhhhhcc--cceeccc
Confidence            6777888887744 45655433 578999999999975 77899999977642   345666677776422  3445565


Q ss_pred             CCCceEEEEEEe
Q 011161          114 SPSGQVCLHIKT  125 (492)
Q Consensus       114 ~~~G~i~l~l~~  125 (492)
                      + .|.+...+++
T Consensus        82 p-qg~l~~ev~f   92 (98)
T cd08687          82 P-QLCLVAELTF   92 (98)
T ss_pred             c-ccEEEEEEEe
Confidence            5 6777777665

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=92.59  E-value=0.29  Score=48.14  Aligned_cols=114  Identities=14%  Similarity=0.140  Sum_probs=73.8

Q ss_pred             CCceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCC
Q 011161           11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~--~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~   87 (492)
                      ...|.|.++++.+++|+-...  +-..+-||++..+.+. .||.+.....--.|.|+|...+.. ...+.+-||.|+.-.
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~  126 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR  126 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence            456889999999999975443  4457889999887543 466665555666889999988764 456888899998765


Q ss_pred             CCceeEEEEEEcccC-CCccc--EEEEccCCCceEEEEEEee
Q 011161           88 KSTVLGSVIVTVESE-GQTGA--VWYTLDSPSGQVCLHIKTI  126 (492)
Q Consensus        88 ~dd~IG~~~i~l~~l-~~~~~--~w~~L~~~~G~i~l~l~~~  126 (492)
                      ++.+.-..-+.+..+ ....+  .-..|++ .|++-+++.+.
T Consensus       127 RHKLC~~g~l~~~~v~rqspd~~~Al~leP-rgq~~~r~~~~  167 (442)
T KOG1452|consen  127 RHKLCHLGLLEAFVVDRQSPDRVVALYLEP-RGQPPLRLPLA  167 (442)
T ss_pred             hccccccchhhhhhhhhcCCcceeeeeccc-CCCCceecccC
Confidence            554322222333322 22223  3344554 68887777644

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.35  E-value=0.97  Score=40.54  Aligned_cols=88  Identities=20%  Similarity=0.272  Sum_probs=57.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeeccCCCCCCeeccEEEEEe--eCC--CcEEEEEEEEcC
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD   84 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~f~i--~~~--~~~L~i~v~d~d   84 (492)
                      .++|.+....++...+ ....+-||.+.+  ++..    ..|.......++.|||...|.+  .+.  ...|.|+||+.+
T Consensus         9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            4677777777765421 233556666653  4331    2343333346899999999976  333  345999999977


Q ss_pred             CCC--CCceeEEEEEEcccCC
Q 011161           85 IIW--KSTVLGSVIVTVESEG  103 (492)
Q Consensus        85 ~~~--~dd~IG~~~i~l~~l~  103 (492)
                      ..+  .+..||.+.++|-+..
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~~  108 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDYK  108 (156)
T ss_pred             cCCCCcceEEEEEeEEeEccc
Confidence            554  4679999999988763

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.97  E-value=0.82  Score=41.34  Aligned_cols=84  Identities=20%  Similarity=0.275  Sum_probs=56.8

Q ss_pred             CCCCcEEEEEE--CCee----eeeeccCCCCCCeeccEEEEEee--CC--CcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 011161           33 GTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD--EL--PVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (492)
Q Consensus        33 g~sDPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~f~i~--~~--~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l  102 (492)
                      ..+|-||.+.+  ++..    ..|..+.-+..+.|||...|.+.  +.  ...|.|+||+.+..++...||.+.++|-+.
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            34777877764  3332    24555555667899999988863  33  345999999987666678999999998876


Q ss_pred             CCcccEEEEccCCCceEEEEEE
Q 011161          103 GQTGAVWYTLDSPSGQVCLHIK  124 (492)
Q Consensus       103 ~~~~~~w~~L~~~~G~i~l~l~  124 (492)
                      ..      .|  +.|...+.+.
T Consensus       108 ~g------~L--r~G~~~l~lw  121 (159)
T cd08397         108 DG------TL--RRGRQKLRVW  121 (159)
T ss_pred             CC------cE--ecCCEEEEEE
Confidence            32      12  3466556554

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain

Probab=90.81  E-value=0.75  Score=38.43  Aligned_cols=89  Identities=18%  Similarity=0.237  Sum_probs=61.7

Q ss_pred             ceeEEeeeeeeec-ccccceEEEEecCeeEEEecc----CC-c---------eeEEEEeccceeeEeecccccccCcEEE
Q 011161          175 EFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA----FS-R---------QMKVIIPIGDIDEIQRSQHAFINPAITI  239 (492)
Q Consensus       175 e~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~~----~g-~---------~~~~~i~~~~I~~i~k~~~~~~~~~i~i  239 (492)
                      |.++-+..|.+.. -....|++-||..++.|....    +. .         .....+++++|.+|-+..-.+=.-|++|
T Consensus         1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEi   80 (108)
T cd01201           1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALEL   80 (108)
T ss_pred             CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEE
Confidence            3567778888877 555679999999999999631    21 1         1133789999999988764322339999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeEEEeeecchHHHHHHHHH
Q 011161          240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR  279 (492)
Q Consensus       240 ~~~~g~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~  279 (492)
                      ...+|                .-+|-+|-+++.+-+.+..
T Consensus        81 F~~d~----------------~~~f~~F~~~~~~k~vv~~  104 (108)
T cd01201          81 FLASR----------------TSIFFAFPDQNAVKKVVYA  104 (108)
T ss_pred             EEeCC----------------ceEEEEeCcHHHHHHHHhh
Confidence            98642                4467778877776666543

Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.58  E-value=5.6  Score=36.60  Aligned_cols=104  Identities=18%  Similarity=0.197  Sum_probs=59.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee---eeeeccCCCCCCeeccEEEEEe--eCC--CcEEEEEEEEcCC
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK---RFSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWDI   85 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~--~~~~---~~T~~~~~t~nP~W~e~f~f~i--~~~--~~~L~i~v~d~d~   85 (492)
                      .++|+|..+.++ ..+......-||.+.+  ++..   .+|.....+.+|.|||...|.+  .+.  ...|.|+||+...
T Consensus        11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~   89 (178)
T cd08399          11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA   89 (178)
T ss_pred             CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence            467777777643 2222222334555433  3332   2555555567899999988876  343  3569999999642


Q ss_pred             CC----------------CCceeEEEEEEcccCCCcccEEEEccCCCceEEEEEEeee
Q 011161           86 IW----------------KSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIK  127 (492)
Q Consensus        86 ~~----------------~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~i~l~l~~~~  127 (492)
                      ..                .+..||-+.+.|-+...      .|  +.|...+.+.-.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~------~L--r~G~~~L~~W~~~  139 (178)
T cd08399          90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF------LL--RTGEYVLHMWQIS  139 (178)
T ss_pred             CcccccccccccccccccccceEEEEEEEEEcCCC------ce--ecCCEEEEEecCC
Confidence            21                13456666666655422      12  4577777766544

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=88.91  E-value=2.2  Score=38.98  Aligned_cols=104  Identities=16%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeee----eeeccC--C--CCCCeeccEEEEEee--CC--CcEEEE
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVP--G--SRYPMWGEEFNFSVD--EL--PVQIIV   78 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~--~~~~~----~T~~~~--~--t~nP~W~e~f~f~i~--~~--~~~L~i   78 (492)
                      ...+.|+|.++.+++..-.....|-|+.+.+  +++..    .|+...  +  ...+.|||...|.+.  +.  ...|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            3467899999999987654446788887764  43322    333221  1  235779999888763  33  345999


Q ss_pred             EEEEcCCCC---------CCceeEEEEEEcccCCCcccEEEEccCCCceEEEEEE
Q 011161           79 TIYDWDIIW---------KSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK  124 (492)
Q Consensus        79 ~v~d~d~~~---------~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~i~l~l~  124 (492)
                      +||+.....         .+..||.+.++|-+...      .|  +.|...+.+.
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~------~L--~~G~~~L~lW  133 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG------VL--RQGSLLLGLW  133 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcchh------hh--ccCCEEEEec
Confidence            999976543         35689999998877632      12  3466666654

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=88.20  E-value=17  Score=31.69  Aligned_cols=113  Identities=18%  Similarity=0.268  Sum_probs=67.8

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee---eeeecc-CCCCCCeeccEEEEEee----C-----CCcEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK---RFSSMV-PGSRYPMWGEEFNFSVD----E-----LPVQII   77 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~---~~T~~~-~~t~nP~W~e~f~f~i~----~-----~~~~L~   77 (492)
                      .....+.|.|.+..+++.    .....||....+...   ..|... ..+-.-.|++.|.+.+.    .     ....+.
T Consensus         4 ~~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~   79 (143)
T PF10358_consen    4 AVKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK   79 (143)
T ss_pred             eeeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence            345678899999998876    223344555444432   333333 23445799999988752    1     123488


Q ss_pred             EEEEEcCCCCCCceeEEEEEEcccCCC----cccEEEEccCC-C--ceEEEEEEeee
Q 011161           78 VTIYDWDIIWKSTVLGSVIVTVESEGQ----TGAVWYTLDSP-S--GQVCLHIKTIK  127 (492)
Q Consensus        78 i~v~d~d~~~~dd~IG~~~i~l~~l~~----~~~~w~~L~~~-~--G~i~l~l~~~~  127 (492)
                      |.|+....-++...+|.+.+.|.+...    ....-++|... .  ..+.+.|.+..
T Consensus        80 ~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~  136 (143)
T PF10358_consen   80 FSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSE  136 (143)
T ss_pred             EEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEE
Confidence            999887533333689999999999832    23445666542 2  33455554443

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)

Probab=87.37  E-value=15  Score=37.17  Aligned_cols=102  Identities=22%  Similarity=0.268  Sum_probs=75.2

Q ss_pred             eeecCCcceeEEeeeeeeec--ccccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccccccCcEEEEEecCC
Q 011161          168 IFNLLPDEFVELSYSCVIER--SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGA  245 (492)
Q Consensus       168 ~F~lp~~e~l~~~~~c~l~~--~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~~~~i~i~~~~g~  245 (492)
                      ...|-+.|.+.....-.|.-  +.---|.+++|+-++.+|+.. .-.-.++||+=+|.+|....+ .+.+|+.|.|....
T Consensus       148 ~L~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~-ne~fNVSiPylqi~~i~ir~S-KfG~aLVieT~~~s  225 (339)
T PF07289_consen  148 QLKLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADM-NESFNVSIPYLQIKSIRIRDS-KFGPALVIETSESS  225 (339)
T ss_pred             eEeeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccC-CccccccchHhhheeeeeecc-ccceEEEEEEeccC
Confidence            34577889999999888755  222229999999999999976 336689999999999998876 56789999887532


Q ss_pred             CCCCCCCCCCCCCceeEEEeeecch----HHHHHHHHHHHHhhh
Q 011161          246 GGHGVPPLGSPDGRVRYKFASFWNR----NHALRQLQRTAKNYH  285 (492)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~f~sf~~r----d~~~~~l~~~~~~~~  285 (492)
                      |              .|...==++.    ++.|+-|..||+...
T Consensus       226 G--------------gYVLGFRvDP~ErL~~l~KEi~sLh~vy~  255 (339)
T PF07289_consen  226 G--------------GYVLGFRVDPEERLQELFKEIQSLHKVYS  255 (339)
T ss_pred             C--------------cEEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence            2              4544433442    577888888888764

It consists of eukaryotic proteins of around 375 residues in length.

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes

Probab=87.33  E-value=4  Score=33.03  Aligned_cols=40  Identities=18%  Similarity=0.413  Sum_probs=29.9

Q ss_pred             ceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccc
Q 011161          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA  231 (492)
Q Consensus       192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~  231 (492)
                      .|++|+|.++++|.-..-.....+.||+++|..++.....
T Consensus        37 ~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf   76 (89)
T PF11605_consen   37 NGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGF   76 (89)
T ss_dssp             CEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-ST
T ss_pred             CCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEccc
Confidence            3999999999999755433344789999999999665543

The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.

>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function

Probab=86.80  E-value=6.8  Score=33.19  Aligned_cols=76  Identities=16%  Similarity=0.195  Sum_probs=53.6

Q ss_pred             ccccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccc--cccCcEEEEEecCCCCCCCCCCCCCCCceeEEEe
Q 011161          188 SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA--FINPAITIILRMGAGGHGVPPLGSPDGRVRYKFA  265 (492)
Q Consensus       188 ~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~--~~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~f~  265 (492)
                      .+.-+|++.|-.+-+=||.+.- .+-=+.|||++|+.|...-..  ...|...|.|+++               -+|.|+
T Consensus        20 g~~~yGkimiGDkaFEFyn~~n-~~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk~~---------------G~f~Fs   83 (118)
T PF06115_consen   20 GLGKYGKIMIGDKAFEFYNDRN-VEDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTKKN---------------GKFTFS   83 (118)
T ss_pred             cccccCeEEEcccceEeecCCC-hhhcEEeChhheeEEEEEEEECCCEEeeEEEEECCC---------------CEEEEE
Confidence            4557799999999999987542 244578999999999987652  4567789999752               388888


Q ss_pred             eecchHHHHHHHHHH
Q 011161          266 SFWNRNHALRQLQRT  280 (492)
Q Consensus       266 sf~~rd~~~~~l~~~  280 (492)
                      +=- .-.+++.++..
T Consensus        84 skd-~k~~Lk~~r~y   97 (118)
T PF06115_consen   84 SKD-SKKVLKAIRKY   97 (118)
T ss_pred             ECC-hHHHHHHHHHh
Confidence            732 23455555443

>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity

Probab=86.18  E-value=4.7  Score=31.86  Aligned_cols=50  Identities=24%  Similarity=0.440  Sum_probs=37.2

Q ss_pred             eEEEEecCe--eEEEeccCCceeEEEEeccceeeEeecccccccC--cEEEEEecC
Q 011161          193 GRMYVSAWH--ICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP--AITIILRMG  244 (492)
Q Consensus       193 G~lyis~~~--~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~~~--~i~i~~~~g  244 (492)
                      |.||+++.+  +-+-..--+....+.||+.+|+..+-.+..  .|  -+.|+.+.+
T Consensus        14 G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~--s~Kv~Lki~~~~~   67 (79)
T PF08567_consen   14 GTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEG--SPKVMLKIVLKDD   67 (79)
T ss_dssp             EEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TT--SSTEEEEEEETTS
T ss_pred             cEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCC--CcceEEEEEEecC
Confidence            999999999  888876444344799999999999988754  34  577877653

The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=85.85  E-value=8.2  Score=33.93  Aligned_cols=55  Identities=31%  Similarity=0.392  Sum_probs=39.6

Q ss_pred             eeeccCCC-CCCeeccEEEEEee--CC--CcEEEEEEEEcCCCCCC----ceeEEEEEEcccCC
Q 011161           49 FSSMVPGS-RYPMWGEEFNFSVD--EL--PVQIIVTIYDWDIIWKS----TVLGSVIVTVESEG  103 (492)
Q Consensus        49 ~T~~~~~t-~nP~W~e~f~f~i~--~~--~~~L~i~v~d~d~~~~d----d~IG~~~i~l~~l~  103 (492)
                      .|....-+ .++.|+|.+.|.+.  +.  ...|.|+||..+.....    ..||.+.++|-+..
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~   86 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR   86 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence            45545444 78999999999863  32  45699999998766555    69999999988773

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>smart00683 DM16 Repeats in sea squirt COS41

Probab=83.94  E-value=5.5  Score=29.08  Aligned_cols=34  Identities=15%  Similarity=0.386  Sum_probs=30.0

Q ss_pred             eEEEEecCeeEEEeccCCceeEEEEeccceeeEee
Q 011161          193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR  227 (492)
Q Consensus       193 G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k  227 (492)
                      |++++|+-++.+||..- ....++|||..|.+++.
T Consensus        21 G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~i~~   54 (55)
T smart00683       21 GVFFVTNLRLVWHSDTN-PRFNISVGYLQITNVRV   54 (55)
T ss_pred             eEEEEEeeEEEEEeCCC-CceEEEEcceeEEEEEe
Confidence            99999999999999874 47789999999998863

4, worm R01H10.6, fly CG1126 etc.

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=81.70  E-value=5.4  Score=36.80  Aligned_cols=54  Identities=15%  Similarity=0.255  Sum_probs=33.4

Q ss_pred             eeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCCCCC---CceeEEEEEEccc
Q 011161           48 RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK---STVLGSVIVTVES  101 (492)
Q Consensus        48 ~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~~~~---dd~IG~~~i~l~~  101 (492)
                      ..|.+...+.+|.|+|+|.++++.   ...+|.|++++...-.+   ...+|.+.++|.+
T Consensus        61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            357777888999999999999853   24569999998653222   2689999999988

>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function

Probab=81.56  E-value=4.1  Score=44.47  Aligned_cols=82  Identities=13%  Similarity=0.268  Sum_probs=58.8

Q ss_pred             eeeeeecccccceEEEEe----cCeeEEEeccC------------CceeEEEEeccceeeEeeccccc------------
Q 011161          181 YSCVIERSFLYHGRMYVS----AWHICFHSNAF------------SRQMKVIIPIGDIDEIQRSQHAF------------  232 (492)
Q Consensus       181 ~~c~l~~~~~~~G~lyis----~~~~cF~s~~~------------g~~~~~~i~~~~I~~i~k~~~~~------------  232 (492)
                      |.|-|..+   .|.+||+    .=.++|.+.-.            .....+.||+.||.++.|..+.+            
T Consensus       521 F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa~g  597 (642)
T PF11696_consen  521 FPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWALG  597 (642)
T ss_pred             eeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeeecC
Confidence            56666553   3899998    44678876411            12445899999999999987653            


Q ss_pred             ---ccCcEEEE-EecCCCCCCCCCCCCCCCceeEEEeeecchHHHHHHHHHH
Q 011161          233 ---INPAITII-LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRT  280 (492)
Q Consensus       233 ---~~~~i~i~-~~~g~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~~  280 (492)
                         +..+++|+ ++.               .+.|.++....||+.|+.|..+
T Consensus       598 ~kEv~DGL~I~g~~~---------------g~~y~lTA~~~RDeLFNRLiAm  634 (642)
T PF11696_consen  598 EKEVVDGLVIVGDEP---------------GQEYHLTAMPRRDELFNRLIAM  634 (642)
T ss_pred             CcccccceEEeccCC---------------CCEEEEEecchHHHHHHHHHhc
Confidence               12356666 443               3589999999999999998765

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=80.09  E-value=19  Score=32.78  Aligned_cols=80  Identities=19%  Similarity=0.201  Sum_probs=57.1

Q ss_pred             CCCcEEEEEECCeee-eeeccCC--CCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeEEEEEEcccCCCc-----
Q 011161           34 TSDPYAIITCGSEKR-FSSMVPG--SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQT-----  105 (492)
Q Consensus        34 ~sDPyv~v~~~~~~~-~T~~~~~--t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG~~~i~l~~l~~~-----  105 (492)
                      ...-|+++.++++.. +|+...-  ...-.|++.|.+.+...+..|.+.||.... ..+..|+.+.+++-.....     
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~~  114 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTDN  114 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccccccC
Confidence            456788998877554 5555433  233466899999998888899999999876 5778999999998766322     


Q ss_pred             -ccEEEEccC
Q 011161          106 -GAVWYTLDS  114 (492)
Q Consensus       106 -~~~w~~L~~  114 (492)
                       ...|+.+.+
T Consensus       115 ~~~~~~eFsS  124 (168)
T PF15625_consen  115 VPLEEYEFSS  124 (168)
T ss_pred             CceEeEEEcC
Confidence             445655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	492
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		6e-08
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		2e-05
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		8e-05
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		1e-04
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		2e-04

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V + D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 138
Query: 119 VCLHI 123
           + LHI
Sbjct: 139 IRLHI 143

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQ 75
           AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F + E     +
Sbjct: 181 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRR 240
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
           + V I+DWD+  ++  +GS+   + SE Q   V  W+ L
Sbjct: 241 LSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGVDGWFKL 278

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73
Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVES--EGQ 104
            + VT++D D       LG V + + S  +GQ
Sbjct: 74  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ 105

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDELPV--Q 75
           AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F + E     +
Sbjct: 40  AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRR 99
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTLDS 114
           + V I+DWD+  ++  +GS+   + SE Q   V  W+ L S
Sbjct: 100 LSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGVDGWFKLLS 139

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPV 74
           +++ L++AK L  A+     DPY  +TC ++ + S++  G    P W E F F+V E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVE 100
           ++   I+D D+  +   +G   + +E
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLE 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	492
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	4e-26
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	1e-25
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	2e-21
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	6e-18
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-17
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	3e-17
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	1e-16
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	1e-16
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	7e-16
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	7e-16
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-15
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	5e-15
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	2e-14
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	5e-14
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-13
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-10
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-13
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	5e-13
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	6e-13
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-09
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	7e-13
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	7e-13
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	9e-13
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	1e-12
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-12
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	2e-12
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-12
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	3e-12
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	7e-12
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-11
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-10
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	4e-10
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	1e-09
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-09
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	3e-09
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	4e-09
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	5e-09
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	5e-09
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-08
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	6e-08
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	3e-07
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-05
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  102 bits (255), Expect = 4e-26
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELP 73
            +++ L++AK L  A+     DPY  +TC ++ + S++       P W E F F+V E  
Sbjct: 11  TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT 70

Query: 74  VQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTL---DSPSGQVCLHIK 124
            ++   I+D D+  +   +G   +    V  EG      Y +   +   G++ + + 
Sbjct: 71  TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  101 bits (252), Expect = 1e-25
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLDS------PSGQ 118
           I V + D D   KS V           LG  I+ V +      VWY LD        SG 
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 138

Query: 119 VCLHIK 124
           + LHI 
Sbjct: 139 IRLHIS 144

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 88.9 bits (221), Expect = 2e-21
 Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIK 124
            + VT++D D       LG V + + S        Y L +        G + L + 
Sbjct: 74  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 129

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 80.3 bits (198), Expect = 6e-18
 Identities = 13/116 (11%), Positives = 38/116 (32%), Gaps = 6/116 (5%)

Query: 8   PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNF 67
                   +++ +++AK            PY  +T   + + +     +  P W +    
Sbjct: 30  GSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTV 89

Query: 68  SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTV-----ESEGQTGAVWYTLDSPSGQ 118
            V  +  ++   ++    +    +LG+  + +      +  +   V  TL     +
Sbjct: 90  IVTPVS-KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK 144

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 78.7 bits (194), Expect = 1e-17
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 26/140 (18%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANL-----------NGTSDPYAIITCGSEKRF 49
           MV F G        L+K+++  A +L                    DPY  +     +  
Sbjct: 1   MVVFNG--------LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG 52

Query: 50  SSMV-PGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVES----EGQ 104
            +     +  P W +EF   V     +I + ++    I     + +  +  E       +
Sbjct: 53  QTATKQKTNSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSR 111

Query: 105 TGAVWYTLDSPSGQVCLHIK 124
               W  L+ P G+V + I 
Sbjct: 112 HFEDWIDLE-PEGKVYVIID 130

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 12  SAYLIKLELLAAKNLI---GANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEF 65
           S++   + +L A  +      ++  T DPY  +   +       +        P+W E F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 66  NFSVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPSGQVCLH 122
            F +D     ++ +T+ D + +     LG+   TV S   G+   V +  +    ++ L 
Sbjct: 61  EFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFN-QVTEMVLE 118

Query: 123 IK 124
           + 
Sbjct: 119 MS 120

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 17/126 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT--CGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
           I+L +L AKNL   +     DP+A I      +   +  V  +  P W + ++  V +  
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK-T 65

Query: 74  VQIIVTIYDWDIIWK---STVLGSVIVTVESEGQTGA-VWYTLDSP----------SGQV 119
             I +++++   I K   +  LG V +   +  +     +  LD             GQ+
Sbjct: 66  DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQI 125

Query: 120 CLHIKT 125
            + ++T
Sbjct: 126 VVSLQT 131

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 73.6 bits (181), Expect = 7e-16
 Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 15/124 (12%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++ + +A N+      G  DP   +    EK+ +  V     P+W E   F +  +P+
Sbjct: 8   MLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66

Query: 75  Q----IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS--------GQVC 120
                + + + D++ I ++ ++G+  V ++     Q+ ++ Y L S            + 
Sbjct: 67  DFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATID 126

Query: 121 LHIK 124
           L I 
Sbjct: 127 LVIG 130

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 73.9 bits (181), Expect = 7e-16
 Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 19/127 (14%)

Query: 15  LIKLELLAAKNLIGANL----------NGTSDPYAIITCGSEKRFSSMV-PGSRYPMWGE 63
            +++ +  A  L               +   DPY  ++    +   +     +  P + E
Sbjct: 30  YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89

Query: 64  EFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVES------EGQTGAVWYTLDSPSG 117
           EF  +V +    + + ++    +     + +  +  +          T   W  L+ P G
Sbjct: 90  EFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE-PEG 147

Query: 118 QVCLHIK 124
           +V + I 
Sbjct: 148 KVFVVIT 154

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            +  AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F +   +
Sbjct: 36  VVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD 95

Query: 72  LPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              ++ V I+DWD+  ++  +GS+   +   +      W+ L S  
Sbjct: 96  KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQE 141

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 71.3 bits (175), Expect = 5e-15
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 20/130 (15%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSM------VPGSRYPMWGEEFNFS 68
           ++++ ++A   L   ++ G SDPY  +T                +  S  P W EE  F 
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80

Query: 69  VDELPVQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAV-----WYTLDSPS---- 116
           V     +++  ++D + + +   LG V V    + +E            + L   S    
Sbjct: 81  VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSR 140

Query: 117 --GQVCLHIK 124
             G + L + 
Sbjct: 141 VKGYLRLKMT 150

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 70.3 bits (172), Expect = 2e-14
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFS 68
           +++++++A   L   ++ G SDPY  +T             +  +  S  P W EE  F 
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68

Query: 69  VDELPVQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDS----------- 114
           V     +I+  ++D + + +   LG V V    + +E       YT              
Sbjct: 69  VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSR 128

Query: 115 PSGQVCLHIK 124
             G + L + 
Sbjct: 129 VKGYLRLKMT 138

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 68.2 bits (167), Expect = 5e-14
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 20/118 (16%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII--------------TCGSEKRFSSMVPGSRYPMWGEE 64
            +L A+NL+  + NG SDP+  +                   KR +  V  S  P W + 
Sbjct: 23  HILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82

Query: 65  FNF---SVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS 116
             +   S+++L  + + VT++D+D    +  LG V++ + S         WY L   +
Sbjct: 83  VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 70.3 bits (172), Expect = 1e-13
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 13/144 (9%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSV- 69
           + + ++ A NL   +L G SDPY   +  S     +KR +S+   +  P + E   F V 
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 213

Query: 70  -DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV-WY-TLDSPSGQVCL-HIK 124
            + +  V + + + D+D I  + V+G   V  E+    G   W   L +P   V   H  
Sbjct: 214 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWH-- 271

Query: 125 TIKLPVNASRVMNGYAGANARRRA 148
            +      S    G  G + +  +
Sbjct: 272 QLVEEKTLSSFTKGGKGLSEKENS 295

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 60.2 bits (146), Expect = 3e-10
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT---CGSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           +L A +L   + NG SDPY  I       +K  + +   +  P++ E F FSV   EL  
Sbjct: 26  ILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQ 85

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE----GQTGAVWYTLDSPSGQVCLHIK 124
           + +  ++YD+D   +  ++G V++    E         +W  +     +     +
Sbjct: 86  RKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGE 140

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL  
Sbjct: 40  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 99

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114
           + + + +YD+D   K  ++G   V + +   G     W  L S
Sbjct: 100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 65.5 bits (160), Expect = 5e-13
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV--DELP 73
            ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL 
Sbjct: 47  GIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELG 106

Query: 74  VQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115
            + + + +YD+D   K  ++G   V + +   G     W  L S 
Sbjct: 107 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 68.3 bits (167), Expect = 6e-13
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 12/129 (9%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPG 55
               +  P       + + +L AKNL   ++ G SDPY  I         +K+ +++   
Sbjct: 140 CFSLRYVPTAG---KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 196

Query: 56  SRYPMWGEEFNFSV--DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-T 111
           +  P + E F+F V  +++  VQ++VT+ D+D I K+  +G V V   S G     W   
Sbjct: 197 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 256

Query: 112 LDSPSGQVC 120
           L +P   + 
Sbjct: 257 LANPRRPIA 265

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT---CGSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL  
Sbjct: 25  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAG 84

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTIKL 128
           + + + +YD+D   K  ++G   V + +   G     W  L S   +    +  I  
Sbjct: 85  KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICF 141

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 65.1 bits (159), Expect = 7e-13
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNF---SVDELP 73
           ++ A+ L   + +GTSDP+  I        K  + +   +  P W E F F     +++ 
Sbjct: 32  IMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVV 91

Query: 74  VQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
            +I+ + + D+D   ++  +G V + +      Q    W  L    
Sbjct: 92  QRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 65.5 bits (160), Expect = 7e-13
 Identities = 20/111 (18%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIIT-----CGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            ++   +L   + NG SDP+  +          K  + +   +  P + EEF + +   +
Sbjct: 42  GIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD 101

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT-LDSPSGQVC 120
           L    + ++++D+DI   +  +G   + + ++G+    WY  L +   ++ 
Sbjct: 102 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE 152

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 64.6 bits (158), Expect = 9e-13
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            ++ A+NL   ++ GTSDPY  +         EK+ +     +  P++ E F F +  ++
Sbjct: 21  NIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEK 80

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
           L    II+T+ D D + ++ V+G + ++ +S       W   +  P   V 
Sbjct: 81  LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA 131

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            +L AKNL   ++ G SDPY  I         +K+ +++   +  P + E F+F V  ++
Sbjct: 30  VILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ 89

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
           +  VQ++VT+ D+D I K+  +G V V   S G     W   L +P   + 
Sbjct: 90  IQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMW 61
              TN+   + + +L A++L  ++++G SDPY  +          K+ + +   +   ++
Sbjct: 26  QSTTNT---LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 82

Query: 62  GEEFNFSV--DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSG 117
            E F F +  + L  + +   + D +   ++ V+G +++   +EG  G  W    D P  
Sbjct: 83  NELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 142

Query: 118 QVC 120
           Q+ 
Sbjct: 143 QIA 145

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 12/105 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           +L AK+L         +PY  I          KR +  V  +  P W + F +      E
Sbjct: 24  ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE 83

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVES-EGQTGAVWYTL 112
              +++ +T++D   + +  S  LG +++ +E+        WY L
Sbjct: 84  FRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 128

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 9/103 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           ++ AK L   + NG +DPY  +        S K  +  +  +R P+W E   +   + ++
Sbjct: 35  IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 94

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD 113
           +  + + +++ D D    +  +G    +++         + + 
Sbjct: 95  MQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNIC 137

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           +L AK+L         +PY  I          KR +  V  +  P W + F +      E
Sbjct: 27  ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE 86

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              +++ +T++D   + +  S  LG +++ +E+        WY L +  
Sbjct: 87  FRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQTHD 135

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 62.4 bits (152), Expect = 7e-12
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 15/135 (11%)

Query: 2   VQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGS 56
           ++   D Q      + L ++  K LI     GT DPY  I           + +  VP  
Sbjct: 18  LRLSIDAQDRV---LLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDC 73

Query: 57  RYPMWGEEFNFSV--DELPVQIIVTIYDWDIIWK-STVLGSVIV---TVESEGQTGAVWY 110
           R P + E F F V  ++   +++VT+++     + S ++G +     ++ +  +  + WY
Sbjct: 74  RDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWY 133

Query: 111 TLDSPSGQVCLHIKT 125
            L         H+K 
Sbjct: 134 YLLGEHLGRTKHLKV 148

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 33  GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92
              + Y  +   + K  +  V GS  P W ++F F ++ L + + V +++  +IW  T++
Sbjct: 21  EKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDLGLTVEVWNKGLIWD-TMV 78

Query: 93  GSVIVTVE----SEGQTGAVWYTLDSPS----GQVCLHIK 124
           G+V + +     S  +    W TLDS +     ++C    
Sbjct: 79  GTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKD 118

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIIT----CGSEKRFSSMVPGSRYPMWGEEFNFSV--DEL 72
             L A      N +G  D Y   +     GS +  +++     +  W E     +  +EL
Sbjct: 31  TRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS 116
           P   + +T+   D   + +V G + + ++        A W  L +  
Sbjct: 88  PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 12/107 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT-----CGSEKRF-SSMVPGSRYPMWGEEFNFSV--DE 71
           ++   NL              +        +   F +  +  S   ++ E F  S+    
Sbjct: 49  IIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPA 108

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDS 114
           L  + + V +   D       LG   +    V   G+    WY L S
Sbjct: 109 LHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 20  LLAAKNLIGANL-NGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
           +     L  A+     S+PY             KR +S+   +  P++ E   + +    
Sbjct: 29  VKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESL 88

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
           L  + +  +++      ++T LG   + ++S    +       L    
Sbjct: 89  LAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 10/131 (7%)

Query: 6   GDPQTNSAYLIKLELLAAKNLIGANLNGTSD---PYAIITCGSEKRFSSMVPGSRYPMWG 62
           G P  +      L LL    +  A  +G  +    Y  +   + +  +  V GS  P W 
Sbjct: 1   GSPGISGGGGGILSLLCVG-VKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGS-QPSWE 58

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTV----ESEGQTGAVWYTLDSPSGQ 118
           ++F F ++ L + + V +++  +IW  T++G+V + +    +S  +    W TLDS +  
Sbjct: 59  QDFMFEINRLDLGLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIM 117

Query: 119 VCLHIKTIKLP 129
               I   K P
Sbjct: 118 ADSEICGTKDP 128

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 17/109 (15%), Positives = 46/109 (42%), Gaps = 12/109 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV---D 70
            ++  K+L+  +     +PY        T  + KR + +   +R P + E   +S    +
Sbjct: 25  MVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE 83

Query: 71  ELPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
            L  + + +++   + + ++  LG + + ++     +    WY L + +
Sbjct: 84  TLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAAT 132

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 13/111 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            + A +NLI  + +G SDPY  +        S +R + +   +  P++ + F+FSV   E
Sbjct: 29  VVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPE 87

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVESE--GQTGAVWYTLDSPSG 117
           +  + + V + +          +LG V+V + SE   +    WY L   SG
Sbjct: 88  VQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 18/116 (15%)

Query: 20  LLAAKNLIGAN-------LNGTSDPYA---IITCGSEKRFSSMVPGSRYPMWGEEFNFSV 69
           ++ A++L               S+PY    ++      + + +   ++ P++ E + F +
Sbjct: 32  VIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEI 91

Query: 70  --DELPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL---DSPSG 117
              E   + + +T+ D+D   +  V+G V V +      + G  W  L      SG
Sbjct: 92  PFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGPSSG 147

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 2   VQFKGDPQTNSAYLIKLELLAAKNLIGANL-NGTSDPYAIIT-----CGSEKRFSSMVPG 55
           +Q   + +      +++E++ A++L        T  PY  +          K+ + +   
Sbjct: 21  IQIGMEDKKGQ---LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARK 77

Query: 56  SRYPMWGEEFNFSVDELPVQIIVTIY-DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112
           +  P++ +   F        + V ++ D+  +     +G   + +E          WY L
Sbjct: 78  TLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

Query: 113 DSPSGQV 119
             PS  V
Sbjct: 138 FPPSSLV 144

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 20  LLAAKNLIGANLNG-TSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV---DEL 72
           +  A+ L   +    TSDPY  +T       K  + ++  +  P + E F F      ++
Sbjct: 28  IKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQI 87

Query: 73  PVQII-VTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDSP 115
               +  TI  +D   +  ++G V++    +E       +   + S 
Sbjct: 88  QELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 54.1 bits (129), Expect = 6e-08
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 35  SDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS-VDELPVQ-IIVTIYDWDIIWKSTVL 92
           +D Y  +  G ++  + +V  +  P W ++ +F  V       + V ++D D  W   +L
Sbjct: 414 TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLL 473

Query: 93  GSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLP 129
           GS   +  S      V   L+   G+V        LP
Sbjct: 474 GSCDRSPHSGFHE--VTCELN--HGRVKFSYHAKCLP 506

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 51.9 bits (123), Expect = 3e-07
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 8/114 (7%)

Query: 14  YLIKLELLAAKNLI---GANLNGTSDPYAII---TCGSEKRFSSMVPGSRYPMWGEEFNF 67
           +   + +L A  +      ++  T DPY  +   T    ++ +        P+W E F F
Sbjct: 18  HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77

Query: 68  SVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
            +D     ++ +T+ D +       LG+   TV S                   
Sbjct: 78  ILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEM 130

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 11/72 (15%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 30  NLNGTSDPYAIITCGSEKRFSSMVPGSRYP-MWGEEFNFSVDELPVQ---IIVTIYDWDI 85
            L G +D  A +T   +  +S ++        + E F + V     +   + + I+++  
Sbjct: 32  ELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91

Query: 86  IWKSTVLGSVIV 97
           ++ + ++G+  +
Sbjct: 92  VFSNKLIGTFRM 103

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 44.2 bits (103), Expect = 7e-05
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 15/113 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF----SSMVPGSRYPMWGEEFNF---- 67
           +KL ++ A+ L           Y  +                       WGE F F    
Sbjct: 13  LKLWIIEARELPP-----KKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67

Query: 68  SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTLDSPSGQ 118
           +V  L + +           K+  +G V V V   +       WY +  P+G 
Sbjct: 68  AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 43/304 (14%), Positives = 94/304 (30%), Gaps = 94/304 (30%)

Query: 25  NLIGANL---NGTSDPYAIITCGSEKRFSSMVPGS-----------RYPMWGEEFN-FSV 69
           ++I  ++     T D +  + C    + ++++  S            +    +  + F  
Sbjct: 331 SIIAESIRDGLATWDNWKHVNC---DKLTTIIESSLNVLEPAEYRKMF----DRLSVFPP 383

Query: 70  D-ELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-------EGQTGAVWYTLDSPSGQVCL 121
              +P  ++       +IW   +   V+V V         E Q      ++  PS  + L
Sbjct: 384 SAHIPTILLS------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLEL 435

Query: 122 HIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVV----------HQKPGPLQTIFNL 171
            +K          +++ Y   N  +    D   P  +          H K         L
Sbjct: 436 KVKLENEYALHRSIVDHY---NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 172 LPDEFVELSYSCVIERSFLYHG----------------RMYVSAWHICFHSNAFSRQMKV 215
               F++  +   +E+   +                  + Y    +IC +   + R +  
Sbjct: 493 FRMVFLDFRF---LEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNA 547

Query: 216 IIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR 275
           I     +D + + +   I    T +LR+         L + D  + +          A +
Sbjct: 548 I-----LDFLPKIEENLICSKYTDLLRIA--------LMAEDEAI-F--------EEAHK 585

Query: 276 QLQR 279
           Q+QR
Sbjct: 586 QVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	492
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.82
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.82
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.8
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.79
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.79
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.79
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.79
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.78
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.76
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.76
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.72
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.72
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.72
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.71
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.71
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.7
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.7
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.7
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.7
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.7
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.69
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.69
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.68
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.68
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.67
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.67
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.67
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.66
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.66
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.65
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.65
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.64
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.64
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.64
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.59
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.59
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.58
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.55
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.52
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.48
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.45
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.43
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.41
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.37
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.28
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.22
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.06
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.03
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.99
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.99
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.91
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	93.28
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	93.02
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	87.46
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	86.79
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	85.76
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	83.61
1pfj_A	108	TFIIH basal transcription factor complex P62 subun	83.31

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.82  E-value=3.4e-19  Score=158.32  Aligned_cols=119  Identities=29%  Similarity=0.482  Sum_probs=105.3

Q ss_pred             CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCC-
Q 011161            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII-   86 (492)
Q Consensus         8 ~~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~-   86 (492)
                      ..+...+.|.|+|++|++|+++|..|.+||||++.+++...+|+++++++||.|+|+|.|.+..+...|.|+|||+|.. 
T Consensus        11 ~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~   90 (148)
T 3kwu_A           11 GTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDI   90 (148)
T ss_dssp             ----CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSH
T ss_pred             cccccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCc
Confidence            3344579999999999999999999999999999999999999999999999999999999987778899999999986 


Q ss_pred             ----------CCCceeEEEEEEcccCCCcccEEEEccC------CCceEEEEEEee
Q 011161           87 ----------WKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI  126 (492)
Q Consensus        87 ----------~~dd~IG~~~i~l~~l~~~~~~w~~L~~------~~G~i~l~l~~~  126 (492)
                                +++++||++.+++.++....+.|++|.+      ..|+|++++.+.
T Consensus        91 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           91 KSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHHTTTSSCSSEEEEEEEEEGGGCCSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             cccccccccCCCCccEEEEEEEHHHCcCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                      7899999999999999777789999985      248888888764

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.82  E-value=1.4e-19  Score=157.92  Aligned_cols=120  Identities=23%  Similarity=0.412  Sum_probs=108.4

Q ss_pred             CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCC
Q 011161            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (492)
Q Consensus         8 ~~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~   87 (492)
                      ......+.|.|+|++|++|++++..|.+||||++.+++++.+|+++++++||.|||+|.|.+.++...|.|+|||++..+
T Consensus         7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~   86 (133)
T 2ep6_A            7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK   86 (133)
T ss_dssp             CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred             cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCC
Confidence            44566799999999999999999999999999999999999999999999999999999999877788999999999998


Q ss_pred             CCceeEEEEEEcccCCCcccEEEEccC------CCceEEEEEEeee
Q 011161           88 KSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTIK  127 (492)
Q Consensus        88 ~dd~IG~~~i~l~~l~~~~~~w~~L~~------~~G~i~l~l~~~~  127 (492)
                      ++++||++.+++.++......|++|..      ..|+|++++++.+
T Consensus        87 ~~~~lG~~~i~l~~l~~~~~~w~~L~~~~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           87 PPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             EEEECCBCEEEGGGCCSSCCEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             CCCeeEEEEEEHHHccCCCceEEEeecCCCCCccceEEEEEEEEEe
Confidence            999999999999999666689999975      3488998888763

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.80  E-value=1.8e-19  Score=161.47  Aligned_cols=114  Identities=15%  Similarity=0.222  Sum_probs=100.3

Q ss_pred             CCceEEEEEEEEeecCCCCCC----------CCCCCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeCCCcEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANL----------NGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT   79 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~----------~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~   79 (492)
                      ...|.|+|+|++|++|+++|.          .+.+||||++.+++.+ .+|+++++++||.|||+|.|.+.+ ...|.|+
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~  104 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELA  104 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEE
Confidence            457899999999999999883          2679999999998866 589999999999999999999865 4689999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccC--C----CcccEEEEccCCCceEEEEEEee
Q 011161           80 IYDWDIIWKSTVLGSVIVTVESE--G----QTGAVWYTLDSPSGQVCLHIKTI  126 (492)
Q Consensus        80 v~d~d~~~~dd~IG~~~i~l~~l--~----~~~~~w~~L~~~~G~i~l~l~~~  126 (492)
                      |||+|.++++++||++.|++.++  +    ...+.|++|.+ .|+|++++++.
T Consensus       105 V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-~G~i~l~l~~~  156 (157)
T 2fk9_A          105 VFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-EGKVFVVITLT  156 (157)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS-SCEEEEEEEEC
T ss_pred             EEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC-CcEEEEEEEEE
Confidence            99999999999999999999987  2    44689999986 89999988764

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=2.1e-18  Score=151.68  Aligned_cols=119  Identities=18%  Similarity=0.318  Sum_probs=103.1

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC----CCcEEEEEEEEcCCC
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDII   86 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~----~~~~L~i~v~d~d~~   86 (492)
                      ...+.|.|+|++|++|+.++. +.+||||++++.+++.+|+++++++||.|||+|.|.+..    ....|.|+|||+|..
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~   82 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETI   82 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCS
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCC
Confidence            567899999999999999998 999999999999989999999999999999999999864    356799999999999


Q ss_pred             CCCceeEEEEEEcccC--CCcccEEEE---ccCC-----CceEEEEEEeeeCcc
Q 011161           87 WKSTVLGSVIVTVESE--GQTGAVWYT---LDSP-----SGQVCLHIKTIKLPV  130 (492)
Q Consensus        87 ~~dd~IG~~~i~l~~l--~~~~~~w~~---L~~~-----~G~i~l~l~~~~~~~  130 (492)
                      +++++||++.+++.++  +...+.|+.   |...     .|+|++++.+.+.+.
T Consensus        83 ~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~~  136 (140)
T 2dmh_A           83 GQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPPSG  136 (140)
T ss_dssp             SSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCCBS
T ss_pred             CCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECCCC
Confidence            9999999999999998  444578988   5432     278888888876544

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.79  E-value=2.2e-18  Score=153.88  Aligned_cols=120  Identities=19%  Similarity=0.326  Sum_probs=96.8

Q ss_pred             CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEE
Q 011161            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY   81 (492)
Q Consensus         8 ~~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~   81 (492)
                      ......+.|.|+|++|++|+.++..+.+||||++.+..      ...+|+++++++||.|||+|.|.+......|.|+||
T Consensus        14 ~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~   93 (153)
T 3b7y_A           14 EDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVF   93 (153)
T ss_dssp             SCCTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEE
T ss_pred             cCCCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEE
Confidence            34566789999999999999999899999999999863      467999999999999999999999876778999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCC--Cc------ccEEEEccCC------CceEEEEEEeee
Q 011161           82 DWDIIWKSTVLGSVIVTVESEG--QT------GAVWYTLDSP------SGQVCLHIKTIK  127 (492)
Q Consensus        82 d~d~~~~dd~IG~~~i~l~~l~--~~------~~~w~~L~~~------~G~i~l~l~~~~  127 (492)
                      |++..+++++||++.+++.++.  ..      ...|++|.++      .|+|++++.+.+
T Consensus        94 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           94 DENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             ECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             ECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            9999999999999999999882  21      1489999763      488888887753

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.79  E-value=1.2e-18  Score=152.46  Aligned_cols=121  Identities=21%  Similarity=0.369  Sum_probs=106.3

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccC-CCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCC
Q 011161            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (492)
Q Consensus         9 ~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~   87 (492)
                      +....+.|.|+|++|++|+..+..+.+||||++.++....+|++++ +++||.|||+|.|.+.+....|.|+|||++.++
T Consensus         5 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~   84 (136)
T 1wfj_A            5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGT   84 (136)
T ss_dssp             CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCT
T ss_pred             CCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCC
Confidence            3456899999999999999999999999999999998889999998 899999999999999877778999999999999


Q ss_pred             CCceeEEEEEEcccC---CCcccEEEEccC---CCceEEEEEEeeeCc
Q 011161           88 KSTVLGSVIVTVESE---GQTGAVWYTLDS---PSGQVCLHIKTIKLP  129 (492)
Q Consensus        88 ~dd~IG~~~i~l~~l---~~~~~~w~~L~~---~~G~i~l~l~~~~~~  129 (492)
                      ++++||++.+++.++   +.....||+|..   ..|+|++++.+.+..
T Consensus        85 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~~  132 (136)
T 1wfj_A           85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             CCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeCC
Confidence            999999999999988   334578999963   247888888877653

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.79  E-value=8.8e-19  Score=153.52  Aligned_cols=114  Identities=18%  Similarity=0.238  Sum_probs=99.5

Q ss_pred             CceEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeCCCcEEEEE
Q 011161           12 SAYLIKLELLAAKNLIGANLNGT-----------SDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT   79 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~-----------sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~   79 (492)
                      ..+.|.|+|++|++|+++|..+.           +||||++.++... .+|+++.+++||.|||+|.|.+.+. ..|.|+
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~   82 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELA   82 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEE
Confidence            45899999999999999886544           9999999998765 5899999999999999999998764 789999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCC----cccEEEEccCCCceEEEEEEeee
Q 011161           80 IYDWDIIWKSTVLGSVIVTVESEGQ----TGAVWYTLDSPSGQVCLHIKTIK  127 (492)
Q Consensus        80 v~d~d~~~~dd~IG~~~i~l~~l~~----~~~~w~~L~~~~G~i~l~l~~~~  127 (492)
                      |||+|..+++++||++.+++.++..    ..+.|++|.+ .|++++++++..
T Consensus        83 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~i~l~l~~~~  133 (136)
T 1gmi_A           83 VFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-EGKVYVIIDLSG  133 (136)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-SCEEEEEEEEEE
T ss_pred             EEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC-CeEEEEEEEEEe
Confidence            9999999999999999999998732    2378999986 899999998764

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.78  E-value=4.9e-18  Score=155.49  Aligned_cols=120  Identities=20%  Similarity=0.315  Sum_probs=97.1

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEE
Q 011161            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD   82 (492)
Q Consensus         9 ~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d   82 (492)
                      .....+.|.|+|++|++|+.++..+.+||||++++..      ...+|+++++++||.|||+|.|.+......|.|+|||
T Consensus         3 ~~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d   82 (176)
T 3m7f_B            3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFD   82 (176)
T ss_dssp             CCTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEE
T ss_pred             CCCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEE
Confidence            4566899999999999999999999999999999864      5679999999999999999999998766789999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCc-cc-------EEEEccCC------CceEEEEEEeeeC
Q 011161           83 WDIIWKSTVLGSVIVTVESEGQT-GA-------VWYTLDSP------SGQVCLHIKTIKL  128 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l~~~-~~-------~w~~L~~~------~G~i~l~l~~~~~  128 (492)
                      ++.+++++|||++.++|..+... ..       .||+|.++      .|+|++++.+.+.
T Consensus        83 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           83 ENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             CC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            99999999999999999998322 11       79999762      4889999988865

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.76  E-value=8.4e-18  Score=144.94  Aligned_cols=112  Identities=20%  Similarity=0.362  Sum_probs=95.0

Q ss_pred             ceEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeccEEEEEee-CCCcEEEEEEEEcCC
Q 011161           13 AYLIKLELLAAKNLIGA---NLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI   85 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~---d~~g~sDPyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~i~-~~~~~L~i~v~d~d~   85 (492)
                      .+.|.|+|++|++|+.+   +..|.+||||++.++.   ...+|+++++++||.|||+|.|.+. .....|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            58899999999999984   6678999999999974   6789999999999999999999995 345679999999998


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccCCCceEEEEEEee
Q 011161           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTI  126 (492)
Q Consensus        86 ~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~~G~i~l~l~~~  126 (492)
                      . ++++||++.+++.++  +.....|++|.+ .|.+.+++.+.
T Consensus        82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~-~~~g~i~~~le  122 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQ-VTEMVLEMSLE  122 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETT-TEEEEEEEEEE
T ss_pred             C-CCceeEEEEEEHHHccCCCcEEEEEEcCC-CceEEEEEEEE
Confidence            7 488999999999998  455678999986 55555555554

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.76  E-value=1.4e-17  Score=144.90  Aligned_cols=112  Identities=24%  Similarity=0.382  Sum_probs=96.1

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCC--
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK--   88 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~--   88 (492)
                      ...|.|+|++|++|+++|..|.+||||++.++.  ...+|+++++++||.|||+|.|.+... ..|.|+|||++..++  
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~l~~~v~d~d~~~~~~   82 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT-DSITISVWNHKKIHKKQ   82 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT-CCEEEEEEEGGGTTSST
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC-CEEEEEEEECCCCCCCC
Confidence            467999999999999999999999999999864  678999999999999999999999764 349999999998876  


Q ss_pred             -CceeEEEEEEcccC---CCcccEEEEccCC--------CceEEEEEEe
Q 011161           89 -STVLGSVIVTVESE---GQTGAVWYTLDSP--------SGQVCLHIKT  125 (492)
Q Consensus        89 -dd~IG~~~i~l~~l---~~~~~~w~~L~~~--------~G~i~l~l~~  125 (492)
                       ++|||++.+++..+   ......|++|..+        .|+|.+++..
T Consensus        83 ~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           83 GAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             TTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence             79999999998877   4445789999763        4777777643

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.72  E-value=5.1e-17  Score=141.92  Aligned_cols=102  Identities=15%  Similarity=0.312  Sum_probs=89.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeccCCCCCCeeccEEEEE-eeC---CCcEEEEEEEE
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~-i~~---~~~~L~i~v~d   82 (492)
                      ..+.|.|+|++|++|+. +..+.+||||++++     ...+.+|+++++++||.|||+|.|. +..   ....|.|+|||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            35789999999999987 77899999999998     3456799999999999999999999 642   34689999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      ++.++++++||++.+++.++  +.....||+|.+
T Consensus        97 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  130 (134)
T 2b3r_A           97 AESLRENFFLGGITLPLKDFNLSKETVKWYQLTA  130 (134)
T ss_dssp             CCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred             CCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence            99999999999999999998  456679999986

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.72  E-value=6.5e-17  Score=147.59  Aligned_cols=117  Identities=12%  Similarity=0.220  Sum_probs=97.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCc
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd   90 (492)
                      ...+.|.|+|++|++|+..+..+.+||||++.+++...+|+++++++||.|||+|.|.+.. ...|.|+|||+|.+++++
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd  111 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDV  111 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCE
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCc
Confidence            4578899999999999944445559999999999988999999999999999999999854 778999999999999999


Q ss_pred             eeEEEEEEcccCC---C----cccEEEEccCC------CceEEEEEEeeeC
Q 011161           91 VLGSVIVTVESEG---Q----TGAVWYTLDSP------SGQVCLHIKTIKL  128 (492)
Q Consensus        91 ~IG~~~i~l~~l~---~----~~~~w~~L~~~------~G~i~l~l~~~~~  128 (492)
                      +||++.+++.++.   .    ....|++|..+      .|+|.+.+.+...
T Consensus       112 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          112 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             eEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            9999999999871   1    12579999763      3778888777654

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.72  E-value=1.7e-17  Score=148.76  Aligned_cols=103  Identities=15%  Similarity=0.131  Sum_probs=90.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---e---eeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEE
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS---E---KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~---~---~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d   82 (492)
                      ..+.|.|.|++|+||+++|..|.+||||++++..   .   +++|+++++++||+|||+|.|.+...   ...|.|+|||
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d  120 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCT  120 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEE
Confidence            4578999999999999999999999999999854   2   67999999999999999999998532   4579999999


Q ss_pred             cCCCCCCceeEEEEEEcccC---CCcccEEEEccC
Q 011161           83 WDIIWKSTVLGSVIVTVESE---GQTGAVWYTLDS  114 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l---~~~~~~w~~L~~  114 (492)
                      +|..+++++||++.+++.++   +.....||+|.+
T Consensus       121 ~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A          121 TDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             ECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             CCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence            99999999999999999998   356679999863

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.71  E-value=3.9e-17  Score=144.08  Aligned_cols=103  Identities=23%  Similarity=0.427  Sum_probs=91.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCC
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDI   85 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~   85 (492)
                      ..+.|.|+|++|++|+.++..+.+||||++++   +....+|+++++++||.|||+|.|.+..   ....|.|+|||++.
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  111 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC
Confidence            56789999999999999998999999999998   4557899999999999999999998853   23679999999999


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        86 ~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      ++++++||++.++|.++  +...+.|++|.+
T Consensus       112 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          112 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            99999999999999998  445779999975

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.71  E-value=8e-17  Score=143.70  Aligned_cols=103  Identities=23%  Similarity=0.427  Sum_probs=91.5

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCC
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDI   85 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~   85 (492)
                      ..+.|.|+|++|++|+.++..+.+||||++++   +....+|+++++++||.|||+|.|.+..   ....|.|+|||++.
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  119 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  119 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC
Confidence            45789999999999999999999999999998   3456799999999999999999998753   25679999999999


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        86 ~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      ++++++||++.+++.++  +...+.|++|.+
T Consensus       120 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          120 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             SSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            99999999999999998  455689999975

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.70  E-value=6.7e-17  Score=139.82  Aligned_cols=102  Identities=23%  Similarity=0.396  Sum_probs=84.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeccCCCCCCeeccEEEEEeeC----CCcEEEEEEEE
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYD   82 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~i~~----~~~~L~i~v~d   82 (492)
                      ..+.|.|+|++|++|+.++..+.+||||++.+     +....+|+++++++||.|||+|.|.+..    ....|.|+|||
T Consensus        16 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d   95 (129)
T 2bwq_A           16 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   95 (129)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEE
Confidence            45889999999999999999999999999998     3567799999999999999999998521    24579999999


Q ss_pred             cCCCCC--CceeEEEEEEcccC-CCcccEEEEcc
Q 011161           83 WDIIWK--STVLGSVIVTVESE-GQTGAVWYTLD  113 (492)
Q Consensus        83 ~d~~~~--dd~IG~~~i~l~~l-~~~~~~w~~L~  113 (492)
                      ++..++  +++||++.+++.++ ....+.||+|+
T Consensus        96 ~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~Lq  129 (129)
T 2bwq_A           96 QARVREEESEFLGEILIELETALLDDEPHWYKLQ  129 (129)
T ss_dssp             C-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             CCcCcCcCCceeEEEEEEccccCCCcCCccEECc
Confidence            999887  99999999999998 34478999984

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.70  E-value=3.2e-17  Score=145.57  Aligned_cols=104  Identities=15%  Similarity=0.221  Sum_probs=91.1

Q ss_pred             CceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEE
Q 011161           12 SAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d-~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d   82 (492)
                      ..+.|.|+|++|++|+.++ ..+.+||||++.+.     ..+.+|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        21 ~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d  100 (148)
T 3fdw_A           21 QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWH  100 (148)
T ss_dssp             TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEE
Confidence            4678999999999999888 68999999999985     2367899999999999999999998643   3469999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 011161           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~  115 (492)
                      +|.++++++||++.++|.++  +.....|++|.++
T Consensus       101 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  135 (148)
T 3fdw_A          101 HGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK  135 (148)
T ss_dssp             ECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred             CCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence            99999999999999999998  4456799999884

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.70  E-value=9.5e-17  Score=142.68  Aligned_cols=102  Identities=27%  Similarity=0.471  Sum_probs=90.8

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCC--CcEEEEEEEEcCC
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDI   85 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~--~~~L~i~v~d~d~   85 (492)
                      .+.|.|+|++|++|+.++..+.+||||++++.     ....+|+++++++||.|||+|.|.+...  ...|.|+|||++.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            46799999999999999999999999999985     4567999999999999999999998642  4579999999999


Q ss_pred             CCCCceeEEEEEEcccC-CCcccEEEEccC
Q 011161           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (492)
Q Consensus        86 ~~~dd~IG~~~i~l~~l-~~~~~~w~~L~~  114 (492)
                      .+++++||++.+++.++ ....+.||+|.+
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~~~~~W~~L~~  139 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKAGVDGWFKLLS  139 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTCCEEEEEECBC
T ss_pred             CCCCCEEEEEEEEHHHhCcCccCCeEEccC
Confidence            99999999999999998 345678999976

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=1.3e-16  Score=140.47  Aligned_cols=104  Identities=20%  Similarity=0.363  Sum_probs=91.0

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeC----CCcEEEEEEEEcC
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWD   84 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~----~~~~L~i~v~d~d   84 (492)
                      ..+.|.|+|++|++|+.++..+.+||||++++.   ....+|+++++++||.|||+|.|.+..    ....|.|+|||++
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d  103 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD  103 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECC
Confidence            467899999999999999999999999999983   456799999999999999999998521    2467999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 011161           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (492)
Q Consensus        85 ~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~  115 (492)
                      .++++++||++.+++.++  +...+.|++|.++
T Consensus       104 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  136 (141)
T 2d8k_A          104 RFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS  136 (141)
T ss_dssp             SSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred             CCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence            999999999999999998  4456789999763

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.69  E-value=3.7e-17  Score=143.96  Aligned_cols=104  Identities=25%  Similarity=0.459  Sum_probs=90.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe--------------eeeeeccCCCCCCeeccEEEEE-ee--C-CCc
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE--------------KRFSSMVPGSRYPMWGEEFNFS-VD--E-LPV   74 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~--------------~~~T~~~~~t~nP~W~e~f~f~-i~--~-~~~   74 (492)
                      .+.|.|+|++|++|+.++..|.+||||++++...              ..+|+++++++||.|||+|.|. +.  + ...
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            4689999999999999999999999999999753              4689999999999999999997 53  2 356


Q ss_pred             EEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC
Q 011161           75 QIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (492)
Q Consensus        75 ~L~i~v~d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~~  116 (492)
                      .|.|+|||+|.++++++||++.+++.++  ....+.||+|.++.
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            7999999999999999999999999988  34568999998743

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.69  E-value=1.8e-16  Score=141.69  Aligned_cols=103  Identities=26%  Similarity=0.421  Sum_probs=90.1

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEe--eCCCcEEEEEEEEcC
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV--DELPVQIIVTIYDWD   84 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i--~~~~~~L~i~v~d~d   84 (492)
                      ..+.|.|+|++|++|+.++ .+.+||||++.+.     ....+|+++++++||.|||+|.|.+  .+....|.|+|||++
T Consensus        25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  103 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRA  103 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECC
T ss_pred             CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCC
Confidence            4678999999999999999 6999999999982     3467999999999999999999998  455567999999999


Q ss_pred             CCCC-CceeEEEEEEcccCC---CcccEEEEccCC
Q 011161           85 IIWK-STVLGSVIVTVESEG---QTGAVWYTLDSP  115 (492)
Q Consensus        85 ~~~~-dd~IG~~~i~l~~l~---~~~~~w~~L~~~  115 (492)
                      ..++ +++||++.+++.++.   .....||+|.++
T Consensus       104 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~  138 (153)
T 3fbk_A          104 SQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE  138 (153)
T ss_dssp             SSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred             CCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence            9877 899999999999883   556789999873

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.68  E-value=1.1e-16  Score=145.83  Aligned_cols=103  Identities=17%  Similarity=0.282  Sum_probs=90.3

Q ss_pred             ceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEE-EcCC
Q 011161           13 AYLIKLELLAAKNLIGANL-NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWDI   85 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~-~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~-d~d~   85 (492)
                      .+.|.|+|++|++|+.+|. .+.+||||++++..     ...+|+++++++||.|||+|.|.+......|.|+|| |+|.
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~  108 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGR  108 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECST
T ss_pred             CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCC
Confidence            5789999999999999995 79999999999743     267899999999999999999998665678999999 9999


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 011161           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (492)
Q Consensus        86 ~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~  115 (492)
                      ++++++||++.+++.++  +.....||+|.++
T Consensus       109 ~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A          109 MDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             TCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            99999999999999998  4567899999873

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.68  E-value=1.3e-16  Score=140.08  Aligned_cols=103  Identities=22%  Similarity=0.408  Sum_probs=90.0

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeccCCCCCCeeccEEEEEe-eC---CCcEEEEEEEE
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIYD   82 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~i-~~---~~~~L~i~v~d   82 (492)
                      ..+.|.|+|++|++|+.++..+.+||||++++     .....+|+++++++||.|||+|.|.+ ..   ....|.|+|||
T Consensus        19 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d   98 (141)
T 1v27_A           19 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   98 (141)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEE
Confidence            35789999999999999999999999999998     34567999999999999999999984 32   23679999999


Q ss_pred             cCCCCC--CceeEEEEEEcccC-CCcccEEEEccC
Q 011161           83 WDIIWK--STVLGSVIVTVESE-GQTGAVWYTLDS  114 (492)
Q Consensus        83 ~d~~~~--dd~IG~~~i~l~~l-~~~~~~w~~L~~  114 (492)
                      ++..++  +++||++.+++.++ ......||+|.+
T Consensus        99 ~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~L~~  133 (141)
T 1v27_A           99 QARVREEESEFLGEILIELETALLDDEPHWYKLQT  133 (141)
T ss_dssp             BCSSSSCCBCCCEEEEEEGGGCCCSSEEEEEECBC
T ss_pred             CCCCcCCCCceEEEEEEEccccCCCCCCceEECcc
Confidence            999887  99999999999997 444689999987

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.67  E-value=4.2e-16  Score=136.77  Aligned_cols=100  Identities=16%  Similarity=0.221  Sum_probs=86.9

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C-eeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEcC
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---S-EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~---~-~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~d   84 (492)
                      ..+.|.|+|++|+   ++|..|.+||||++++.   + ...+|+++++++||.|||+|.|.+...   ...|.|+|||+|
T Consensus        24 ~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d  100 (138)
T 1wfm_A           24 QKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD  100 (138)
T ss_dssp             TTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECC
Confidence            4578999999999   46778999999999983   2 246899999999999999999998542   457999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        85 ~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      .++++++||++.++|.++  +.....|++|.+
T Consensus       101 ~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~  132 (138)
T 1wfm_A          101 RFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             SSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             CCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence            999999999999999998  566789999986

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.67  E-value=4e-16  Score=136.70  Aligned_cols=104  Identities=18%  Similarity=0.235  Sum_probs=88.5

Q ss_pred             CceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEE-eeC---CCcEEEEEEEEc
Q 011161           12 SAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYDW   83 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~-g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~-i~~---~~~~L~i~v~d~   83 (492)
                      ..+.|.|+|++|++|+.++.. +.+||||++++.   ....+|+++++++||.|||+|.|. +..   ....|.|+|||+
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~   99 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEEC
Confidence            457899999999999999985 899999999984   367899999999999999999996 543   235799999999


Q ss_pred             CCCCCCceeEEEEEEcccCC---CcccEEEEccCC
Q 011161           84 DIIWKSTVLGSVIVTVESEG---QTGAVWYTLDSP  115 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l~---~~~~~w~~L~~~  115 (492)
                      |.++++++||++.++|.++.   .....|++|.++
T Consensus       100 d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A          100 DRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             CCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            99999999999999999983   233567988763

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.67  E-value=3.4e-16  Score=137.82  Aligned_cols=103  Identities=18%  Similarity=0.335  Sum_probs=89.0

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEE-eeC--C-CcEEEEEEEE
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFS-VDE--L-PVQIIVTIYD   82 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~-i~~--~-~~~L~i~v~d   82 (492)
                      ..+.|.|+|++|++|+.++..+.+||||++++..     ...+|+++++++||.|||+|.|. +..  . ...|.|+|||
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d  106 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCD  106 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEE
Confidence            4678999999999999999999999999999864     57799999999999999999998 532  1 2579999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      ++..+++++||++.+++.++  +.....|++|..
T Consensus       107 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          107 EDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             ECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             CCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            99999999999999999998  344566777764

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.66  E-value=6e-16  Score=135.26  Aligned_cols=104  Identities=26%  Similarity=0.402  Sum_probs=88.1

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeCCC---cEEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELP---VQIIVTIYD   82 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~~~---~~L~i~v~d   82 (492)
                      ...+.|.|+|++|++|+.++..|.+||||++++..     .+.+|++++++.||.|||+|.|.+....   ..|.|+|||
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           13 PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence            34689999999999999999999999999999853     3668999999999999999999985433   569999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 011161           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~  114 (492)
                      ++..+++++||++.+++.++......|++|..
T Consensus        93 ~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~  124 (138)
T 3n5a_A           93 KDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIA  124 (138)
T ss_dssp             CCSSSCCEEEEEEEESSSSCHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEEEEEEccccCChHHHHHHHHHh
Confidence            99999999999999999977544455655543

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=2.4e-16  Score=138.82  Aligned_cols=104  Identities=26%  Similarity=0.383  Sum_probs=88.3

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEc
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW   83 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~   83 (492)
                      ..+.|.|+|++|++|+.++..+ +||||++++.     ..+.+|+++++++||.|||+|.|.+..   ....|.|+|||+
T Consensus        22 ~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  100 (142)
T 2dmg_A           22 QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNS  100 (142)
T ss_dssp             TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEEC
Confidence            3578999999999999999888 9999999983     256799999999999999999998743   134799999999


Q ss_pred             CCCCC--CceeEEEEEEcccC--CCcccEEEEccCCC
Q 011161           84 DIIWK--STVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (492)
Q Consensus        84 d~~~~--dd~IG~~~i~l~~l--~~~~~~w~~L~~~~  116 (492)
                      +.+++  +++||++.+++.++  ......|++|.++.
T Consensus       101 d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~  137 (142)
T 2dmg_A          101 GGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS  137 (142)
T ss_dssp             CCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSC
T ss_pred             CCccccCCcEEEEEEEecccccccccccceeeccCCC
Confidence            98764  57999999999987  44677899998743

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.65  E-value=1.1e-16  Score=144.94  Aligned_cols=103  Identities=17%  Similarity=0.335  Sum_probs=88.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEc
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~   83 (492)
                      ..+.|.|+|++|++|+.++..|.+||||++++..     ...+|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  114 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY  114 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEEC
Confidence            3578999999999999999999999999999864     567999999999999999999998542   45799999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 011161           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~  114 (492)
                      +.++++++||++.+++.+++.....|++|..
T Consensus       115 d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~  145 (166)
T 2cm5_A          115 DIGKSNDYIGGCQLGISAKGERLKHWYECLK  145 (166)
T ss_dssp             CSSSCCEEEEEEEEETTCCHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEeEEEecccCCchhHHHHHHHh
Confidence            9999999999999999987544555666543

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.65  E-value=1e-15  Score=137.44  Aligned_cols=103  Identities=33%  Similarity=0.479  Sum_probs=88.0

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEc
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~   83 (492)
                      ..+.|.|+|++|+||+.++..|.+||||++++..     ...+|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  102 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEEC
Confidence            4579999999999999999999999999999842     356899999999999999999998542   35699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--------------CCcccEEEEccC
Q 011161           84 DIIWKSTVLGSVIVTVESE--------------GQTGAVWYTLDS  114 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l--------------~~~~~~w~~L~~  114 (492)
                      |.++++++||++.+++..+              +.....|++|.+
T Consensus       103 d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~  147 (159)
T 1tjx_A          103 DKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (159)
T ss_dssp             CSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence            9999999999999999854              234567888765

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=3.9e-16  Score=138.33  Aligned_cols=104  Identities=18%  Similarity=0.321  Sum_probs=87.9

Q ss_pred             CceEEEEEEEEeecCCCC-CC------CCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEE
Q 011161           12 SAYLIKLELLAAKNLIGA-NL------NGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIV   78 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~-d~------~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i   78 (492)
                      ..+.|.|+|++|++|+.+ +.      .+.+||||++++.   ....+|+++++++||.|||+|.|.+..   ....|.|
T Consensus        24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~  103 (147)
T 2enp_A           24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLL  103 (147)
T ss_dssp             TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEE
T ss_pred             CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEE
Confidence            457899999999999984 43      3589999999985   356799999999999999999998753   1357999


Q ss_pred             EEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 011161           79 TIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (492)
Q Consensus        79 ~v~d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~  115 (492)
                      +|||++.++++++||++.++|.++  ......|+.|.++
T Consensus       104 ~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  142 (147)
T 2enp_A          104 TVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS  142 (147)
T ss_dssp             EEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred             EEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence            999999999999999999999998  3445689999873

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.64  E-value=2.1e-16  Score=141.03  Aligned_cols=103  Identities=18%  Similarity=0.370  Sum_probs=82.2

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe---eeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEc
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSE---KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~--~~~---~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~   83 (492)
                      ..+.|.|+|++|++|+.++..+.+||||++++  +..   +++|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~  107 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS  107 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeC
Confidence            35789999999999999999999999999998  333   56899999999999999999998653   25699999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 011161           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~  114 (492)
                      +.++++++||++.+++.+.......|++|..
T Consensus       108 d~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~  138 (153)
T 1w15_A          108 ERGSRNEVIGRLVLGATAEGSGGGHWKEICD  138 (153)
T ss_dssp             CTTSCCEEEEEEEESTTCCSHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEEECCCCCchHHHHHHHHHh
Confidence            9999999999999999986555556666543

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.64  E-value=4.5e-15  Score=145.90  Aligned_cols=116  Identities=22%  Similarity=0.460  Sum_probs=99.5

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCC
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDI   85 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~   85 (492)
                      ..+.|.|+|++|++|+.+|..+.+||||++.+.   ....+|+++++++||.|||+|.|.+..   ....|.|+|||+|.
T Consensus        17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~   96 (284)
T 2r83_A           17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR   96 (284)
T ss_dssp             TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCC
Confidence            468999999999999999999999999999985   346789999999999999999999853   24679999999999


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEeee
Q 011161           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK  127 (492)
Q Consensus        86 ~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~~  127 (492)
                      ++++++||++.+++.++  +.....|++|.+.       .|++++.+.+.+
T Consensus        97 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p  147 (284)
T 2r83_A           97 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVP  147 (284)
T ss_dssp             SSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEET
T ss_pred             CCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecC
Confidence            99999999999999998  4556789999652       377877776653

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.59  E-value=1e-14  Score=155.21  Aligned_cols=117  Identities=22%  Similarity=0.354  Sum_probs=102.0

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCC-cEEEEEEEEcCCCCC
Q 011161           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDIIWK   88 (492)
Q Consensus        10 ~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~-~~L~i~v~d~d~~~~   88 (492)
                      ....+.|.|+|++|++|+++|..|.+||||++.+++...+|+++++++||.|+|+|.|.+..+. ..|.|+|||+|..++
T Consensus       383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~  462 (510)
T 3jzy_A          383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSP  462 (510)
T ss_dssp             ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSS
T ss_pred             CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCC
Confidence            3456899999999999999999999999999999999999999999999999999999996544 569999999999999


Q ss_pred             CceeEEEEEEcccCC--C----cccEEEEccC-CCceEEEEEEee
Q 011161           89 STVLGSVIVTVESEG--Q----TGAVWYTLDS-PSGQVCLHIKTI  126 (492)
Q Consensus        89 dd~IG~~~i~l~~l~--~----~~~~w~~L~~-~~G~i~l~l~~~  126 (492)
                      +++||++.+++.++.  .    ....|++|.. ..|++.+.+++.
T Consensus       463 ~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          463 DDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             CCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             CCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence            999999999999882  1    2578999976 469998888765

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.59  E-value=1.2e-14  Score=144.07  Aligned_cols=116  Identities=21%  Similarity=0.360  Sum_probs=96.9

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEcCC
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWDI   85 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~d~   85 (492)
                      ..+.|.|+|++|++|+.+|..|.+||||++++   +....+|+++++++||.|+|+|.|.+...   ...|.|+|||+|.
T Consensus        18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~   97 (296)
T 1dqv_A           18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR   97 (296)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCC
Confidence            46899999999999999999999999999998   45678999999999999999999998532   3479999999999


Q ss_pred             CCCCceeEEEEEE-cccC---CCcccEEEEccCC------CceEEEEEEeee
Q 011161           86 IWKSTVLGSVIVT-VESE---GQTGAVWYTLDSP------SGQVCLHIKTIK  127 (492)
Q Consensus        86 ~~~dd~IG~~~i~-l~~l---~~~~~~w~~L~~~------~G~i~l~l~~~~  127 (492)
                      ++++++||++.++ +.++   ......|++|...      .|++.+.+.+.+
T Consensus        98 ~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~  149 (296)
T 1dqv_A           98 FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLP  149 (296)
T ss_dssp             SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEET
T ss_pred             CCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEecc
Confidence            9999999999995 4333   4455789999652      388888777654

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.58  E-value=1.5e-14  Score=153.60  Aligned_cols=110  Identities=20%  Similarity=0.293  Sum_probs=96.2

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeC--CCcEEEEEEEEcCCCCCC
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDIIWKS   89 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~--~~~~L~i~v~d~d~~~~d   89 (492)
                      ..+.|.|+|++|++|+. |..|.+||||+|.+++...+|+++++++||.|||+|.|.+..  ....|.|+|||+|..++|
T Consensus       392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d  470 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD  470 (540)
T ss_dssp             TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred             cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            35789999999999998 999999999999999988999999999999999999998642  467799999999999999


Q ss_pred             ceeEEEEEEcccCCCcccEEEEccCCCceEEEEEEee
Q 011161           90 TVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTI  126 (492)
Q Consensus        90 d~IG~~~i~l~~l~~~~~~w~~L~~~~G~i~l~l~~~  126 (492)
                      ||||.+.++|..  .....|+.|.  +|.+++++++.
T Consensus       471 D~LG~~~~~L~~--g~~~~~~~l~--~G~l~~~~~~~  503 (540)
T 3nsj_A          471 DLLGSCDRSPHS--GFHEVTCELN--HGRVKFSYHAK  503 (540)
T ss_dssp             EEEEEEEECCCS--EEEEEEEECS--SSEEEEEEEEE
T ss_pred             CEEEEEEEEeeC--CcEEEEEEcC--CeEEEEEEEEE
Confidence            999999999884  2346788875  68888887754

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.55  E-value=2.6e-14  Score=124.24  Aligned_cols=84  Identities=17%  Similarity=0.324  Sum_probs=72.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccC-CCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCce
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~   91 (492)
                      -+.|.|+|++|++|..   .|.+||||++.  .+..+|+++. ++.||.|||+|.|.+......|.|+|||+| .++|++
T Consensus         4 ~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~   77 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM   77 (131)
T ss_dssp             CEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEE
T ss_pred             ceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCe
Confidence            4789999999998853   67899999999  3344565554 689999999999999876778999999999 889999


Q ss_pred             eEEEEEEcccC
Q 011161           92 LGSVIVTVESE  102 (492)
Q Consensus        92 IG~~~i~l~~l  102 (492)
                      ||++.++|.++
T Consensus        78 iG~~~i~l~~l   88 (131)
T 2cjt_A           78 VGTVWIPLRTI   88 (131)
T ss_dssp             EEEEEEEGGGS
T ss_pred             EEEEEEEHHHh
Confidence            99999999998

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.52  E-value=6.8e-14  Score=126.70  Aligned_cols=84  Identities=17%  Similarity=0.313  Sum_probs=73.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccC-CCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCce
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~   91 (492)
                      .+.|.|+|++|++|.   ..+.+||||++.  .+..+|++++ ++.||.|||+|.|.+.+....|.|+|||+| .++|++
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~   86 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM   86 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEE
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCce
Confidence            469999999999884   368899999999  3345676665 589999999999999877778999999999 889999


Q ss_pred             eEEEEEEcccC
Q 011161           92 LGSVIVTVESE  102 (492)
Q Consensus        92 IG~~~i~l~~l  102 (492)
                      ||++.++|.++
T Consensus        87 iG~~~i~L~~l   97 (167)
T 2cjs_A           87 VGTVWIPLRTI   97 (167)
T ss_dssp             EEEEEEEGGGS
T ss_pred             EEEEEEEHHHh
Confidence            99999999998

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.48  E-value=2.1e-13  Score=133.89  Aligned_cols=103  Identities=33%  Similarity=0.480  Sum_probs=87.2

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEc
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~   83 (492)
                      ..+.|.|.|++|++|+.++..+.+||||++++.  +   .+.+|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus       148 ~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  227 (284)
T 2r83_A          148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  227 (284)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred             cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence            356899999999999999999999999999973  2   356899999999999999999998643   34699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--------------CCcccEEEEccC
Q 011161           84 DIIWKSTVLGSVIVTVESE--------------GQTGAVWYTLDS  114 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l--------------~~~~~~w~~L~~  114 (492)
                      +.++++++||++.+++..+              +....+|++|.+
T Consensus       228 d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~  272 (284)
T 2r83_A          228 DKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  272 (284)
T ss_dssp             CSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred             CCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence            9999999999999999864              233457888865

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.45  E-value=1.1e-12  Score=142.26  Aligned_cols=106  Identities=21%  Similarity=0.303  Sum_probs=92.2

Q ss_pred             CceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeeeeccCCC-CCCeeccEEEEEeeCCC-cEEEEEEEE
Q 011161           12 SAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGS-RYPMWGEEFNFSVDELP-VQIIVTIYD   82 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~--~g~sDPyv~v~~~~-----~~~~T~~~~~t-~nP~W~e~f~f~i~~~~-~~L~i~v~d   82 (492)
                      ..+.|.|+|++|++|+..+.  .+.+||||+|.+.+     .+.+|++++++ +||+|||+|.|.+..+. ..|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            57899999999999999884  78999999999843     57799999987 99999999999986543 569999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (492)
                      +|..+++++||++.++|..+..+ ..|++|....|+
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G-~r~v~L~d~~g~  609 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQG-YRHVHLLSKNGD  609 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCE-EEEEEEECTTSC
T ss_pred             cCCCCCCceeEEEEEEHHHcCCC-cEEEeCCCCCcC
Confidence            99999999999999999999664 579999776555

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.43  E-value=3.4e-13  Score=147.52  Aligned_cols=106  Identities=20%  Similarity=0.358  Sum_probs=93.5

Q ss_pred             CCCCceEEEEEEEEeecCCC---CCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeC-CCcEEEEEEE
Q 011161            9 QTNSAYLIKLELLAAKNLIG---ANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIY   81 (492)
Q Consensus         9 ~~~~~~~L~V~Vi~a~~L~~---~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~-~~~~L~i~v~   81 (492)
                      .....+.|.|+|++|++|+.   +|..|.+||||++.+.   ..+.+|+++++++||+|||+|.|.+.. ....|.|+||
T Consensus        13 e~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~   92 (749)
T 1cjy_A           13 EHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLM   92 (749)
T ss_dssp             CCCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEE
T ss_pred             cCCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEE
Confidence            34567899999999999998   8888999999999997   457799999999999999999999976 3567999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 011161           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (492)
Q Consensus        82 d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~  115 (492)
                      |+|.++ +++||++.+++.++  +.....|++|.+.
T Consensus        93 D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           93 DANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             ECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             ECCCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            999998 99999999999998  4446899999863

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.41  E-value=2.7e-12  Score=110.98  Aligned_cols=115  Identities=14%  Similarity=0.243  Sum_probs=92.5

Q ss_pred             CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccC-CCCCCeeccEEEEEee---CCCcEEEEEEEEc
Q 011161            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVD---ELPVQIIVTIYDW   83 (492)
Q Consensus         8 ~~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~i~---~~~~~L~i~v~d~   83 (492)
                      ...+..--|+|.|.+|.+|+     +++|||+++.+.+.+++|+++. ++.||.|||.|.+.+.   +....|.|.|+|+
T Consensus        15 ~~~~~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~   89 (144)
T 3l9b_A           15 VPRGSHMALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNY   89 (144)
T ss_dssp             ----CCEEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEE
T ss_pred             ccCCCcEEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEEC
Confidence            44456678999999999997     5789999999999999999998 6999999999999985   3356699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccCCC-----ceEEEEEEeee
Q 011161           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-----GQVCLHIKTIK  127 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~~-----G~i~l~l~~~~  127 (492)
                      ++++++.+||.+.++|.++  .+....+-.|.+.+     +.|.+.+.|.+
T Consensus        90 ~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~p  140 (144)
T 3l9b_A           90 SKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQA  140 (144)
T ss_dssp             CTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             ccccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecC
Confidence            9999999999999999998  33344556665533     55667766665

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.37  E-value=1.4e-13  Score=136.36  Aligned_cols=102  Identities=26%  Similarity=0.398  Sum_probs=86.2

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEc
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~   83 (492)
                      ..+.|.|.|++|++|+.+|..|.+||||++++.  +   .+++|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus       150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence            357899999999999999999999999999985  2   456899999999999999999988543   24699999999


Q ss_pred             CCCCCCceeEEEEEEcccCCC-cccEEEEcc
Q 011161           84 DIIWKSTVLGSVIVTVESEGQ-TGAVWYTLD  113 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l~~-~~~~w~~L~  113 (492)
                      +.++++++||.+.+++..++. ...+|+++.
T Consensus       230 d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~  260 (296)
T 1dqv_A          230 DCIGHNEVIGVCRVGPEAADPHGREHWAEML  260 (296)
T ss_dssp             CSSSCCEEEEECCCSSCTTCHHHHHHHHTSS
T ss_pred             CCCCCCceEEEEEECCccCCchhHHHHHHHH
Confidence            999999999999999988754 445555543

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.28  E-value=2.2e-13  Score=143.74  Aligned_cols=99  Identities=21%  Similarity=0.290  Sum_probs=15.4

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCC---CCCeeccEEEEEeeCCCcEEEEEEEEc-C
Q 011161           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGS---RYPMWGEEFNFSVDELPVQIIVTIYDW-D   84 (492)
Q Consensus        10 ~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~-~~~T~~~~~t---~nP~W~e~f~f~i~~~~~~L~i~v~d~-d   84 (492)
                      .+..+.|.|+|++|++|+++|     ||||.+++++. ..||++++++   +||.|||+|.|.+......|.|+|||. |
T Consensus         7 ~r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d   81 (483)
T 3bxj_A            7 RRVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSD   81 (483)
T ss_dssp             EEEEECC--------------------------------------------------CCEECC-----------------
T ss_pred             ceeccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCC
Confidence            345678999999999999887     99999999765 5689999998   999999999998644456799999994 5


Q ss_pred             ---CCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 011161           85 ---IIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (492)
Q Consensus        85 ---~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~  113 (492)
                         ..+++++||.+.+++.++  +...+.||+|.
T Consensus        82 ~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~  115 (483)
T 3bxj_A           82 KKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVT  115 (483)
T ss_dssp             -------------------------CCEECC---
T ss_pred             ccccCCCCceEEEEEEEHHHhcCCCCCCeEEECC
Confidence               367899999999999998  45567899994

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.22  E-value=1.8e-11  Score=134.48  Aligned_cols=102  Identities=27%  Similarity=0.494  Sum_probs=90.3

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeccCCCCCCeeccEEEEEeeC--CCcEEEEEEEEcCC
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDI   85 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~i~~--~~~~L~i~v~d~d~   85 (492)
                      .+.|.|.|++|++|.++|..|.+||||++.+     ...+.+|+++++++||.|||+|.|.+..  ....|.|+|||+|.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            4678999999999999999999999999998     3456799999999999999999999853  34569999999999


Q ss_pred             CCCCceeEEEEEEcccC-CCcccEEEEccC
Q 011161           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (492)
Q Consensus        86 ~~~dd~IG~~~i~l~~l-~~~~~~w~~L~~  114 (492)
                      .+++++||.+.+++.++ ....+.|+.|..
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~w~~Lls  280 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKAGVDGWFKLLS  280 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHCCEEEEEECBC
T ss_pred             ccccccccccccchhhhccCCcccceeecc
Confidence            99999999999999988 444689999876

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.06  E-value=1.4e-09  Score=120.29  Aligned_cols=106  Identities=16%  Similarity=0.216  Sum_probs=84.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeccCC-CCCCeeccE-EEEE-eeCCC-cEEEEEEE
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPG-SRYPMWGEE-FNFS-VDELP-VQIIVTIY   81 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-------~~~~T~~~~~-t~nP~W~e~-f~f~-i~~~~-~~L~i~v~   81 (492)
                      .+.|+|+|++|++|+..    .+||||+|.+.+       .+.+|+++.+ ++||+|||+ |.|. +..+. ..|.|+||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            57899999999999753    589999999853       4668999876 599999998 9998 64433 46999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc------eEEEEEEeee
Q 011161           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG------QVCLHIKTIK  127 (492)
Q Consensus        82 d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G------~i~l~l~~~~  127 (492)
                      |++    ++|||++.++|..+..+ .++++|..+.|      .+.+++.+.-
T Consensus       725 D~d----ddfiG~~~ipL~~L~~G-yR~vpL~~~~g~~~~~atLfv~i~~~~  771 (816)
T 3qr0_A          725 EEN----GKFIGHRVMPLDGIKPG-YRHVPLRNESNRPLGLASVFAHIVAKD  771 (816)
T ss_dssp             ETT----SCEEEEEEEESTTCCCE-EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             ecC----CCeeeEEEEEHHHcCCc-ceEEEEeCCCCCCCCceEEEEEEEEEe
Confidence            985    78999999999999765 56888877554      4556666553

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.03  E-value=1.3e-09  Score=121.32  Aligned_cols=106  Identities=15%  Similarity=0.237  Sum_probs=84.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeccCC-CCCCeecc-EEEEE-eeCC-CcEEEEEEEE
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPG-SRYPMWGE-EFNFS-VDEL-PVQIIVTIYD   82 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~------~~~~T~~~~~-t~nP~W~e-~f~f~-i~~~-~~~L~i~v~d   82 (492)
                      ...|.|+|++|++|+..    .+||||+|.+.+      .+.+|+++.+ +.||+||| +|.|. +..+ ...|.|+|||
T Consensus       724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            46899999999999753    689999999843      2468999976 59999999 69998 6433 3469999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCC------ceEEEEEEeee
Q 011161           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPS------GQVCLHIKTIK  127 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~------G~i~l~l~~~~  127 (492)
                      +|    ++|||++.++|..+..+ .++++|..+.      +.|.+++.+..
T Consensus       800 ~d----ddfiG~~~lpL~~L~~G-yR~vpL~~~~g~~l~~atLfv~i~~~~  845 (885)
T 3ohm_B          800 EG----GKFVGHRILPVSAIRSG-YHYVCLRNEANQPLCLPALLIYTEASD  845 (885)
T ss_dssp             TT----TEEEEEEEEETTTCCCE-EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             CC----ccEEeeEEEEHHHcCCC-ceEEEecCCCCCccCceEEEEEEEEEe
Confidence            87    78999999999999765 5678887754      44667776663

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.99  E-value=2.8e-09  Score=118.28  Aligned_cols=98  Identities=16%  Similarity=0.218  Sum_probs=79.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeee-ccCC-CCCCeecc-EEEE-EeeCCC-cEEEEEE
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSS-MVPG-SRYPMWGE-EFNF-SVDELP-VQIIVTI   80 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~------~~~~T~-~~~~-t~nP~W~e-~f~f-~i~~~~-~~L~i~v   80 (492)
                      ..+.|.|+|++|++|+.    +.+||||+|.+.+      .+.+|+ ++.+ ++||+||| +|.| .+..+. ..|.|.|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46789999999999975    4689999999832      256899 7765 69999999 6999 775432 3699999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (492)
Q Consensus        81 ~d~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (492)
                      ||+|    +++||++.++|..+..+ ..|++|....|+
T Consensus       752 ~D~d----~d~iG~~~ipl~~L~~G-~r~v~L~~~~g~  784 (799)
T 2zkm_X          752 MEEG----NKFLGHRIIPINALNSG-YHHLCLHSESNM  784 (799)
T ss_dssp             EETT----TEEEEEEEEEGGGBCCE-EEEEEEECTTCC
T ss_pred             EEeC----CCccceEeeehhhcCCC-cEEEeccCCCCC
Confidence            9987    78999999999999664 678999775555

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.99  E-value=1.1e-08  Score=85.98  Aligned_cols=108  Identities=13%  Similarity=0.208  Sum_probs=83.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee----eee-eccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCC
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK----RFS-SMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~----~~T-~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~   87 (492)
                      ...|+|.+.++.--..+......||||.+.++...    .+| .+.++|..|.|+++|.-.+.+ .+.|.|.|++...  
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~--   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE--   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT--
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC--
Confidence            46788888665532212223468999999986433    244 667889999999999999876 7889999997554  


Q ss_pred             CCceeEEEEEEcccCC-------CcccEEEEccCCCceEEEEEEee
Q 011161           88 KSTVLGSVIVTVESEG-------QTGAVWYTLDSPSGQVCLHIKTI  126 (492)
Q Consensus        88 ~dd~IG~~~i~l~~l~-------~~~~~w~~L~~~~G~i~l~l~~~  126 (492)
                        +|++.|++++.++.       ...+.|++|++ .|++++.+++.
T Consensus        82 --~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP-~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 --EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP-QAKVLMSVQYF  124 (126)
T ss_dssp             --EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-SCEEEEEEEEE
T ss_pred             --CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-CcEEEEEEEEe
Confidence              89999999999872       34578999998 89999999876

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.91  E-value=1.2e-08  Score=86.70  Aligned_cols=113  Identities=11%  Similarity=0.232  Sum_probs=86.9

Q ss_pred             CCCCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECCee----eee-eccCCCCCCeeccEEEEEeeCCCcEEEEEEEE
Q 011161            9 QTNSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGSEK----RFS-SMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD   82 (492)
Q Consensus         9 ~~~~~~~L~V~Vi~a~~L~~~d-~~g~sDPyv~v~~~~~~----~~T-~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d   82 (492)
                      ++.-...|+|.+.+..-.+.+. .....||||.|.++...    .+| .+.++|..|.|+++|.-.+.+ .+.|.|.|++
T Consensus         5 ~~~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh   83 (138)
T 2enj_A            5 SSGMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKG   83 (138)
T ss_dssp             CSSCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEEC
T ss_pred             ccccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEc
Confidence            4455678999987765433222 13468999999986432    456 666778999999999998876 7889999996


Q ss_pred             cCCCCCCceeEEEEEEcccCC-------CcccEEEEccCCCceEEEEEEeee
Q 011161           83 WDIIWKSTVLGSVIVTVESEG-------QTGAVWYTLDSPSGQVCLHIKTIK  127 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l~-------~~~~~w~~L~~~~G~i~l~l~~~~  127 (492)
                      ...    +|++.+++++.++.       ...+.|++|++ .|++++.+++..
T Consensus        84 ~a~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP-~Gkl~v~i~~~~  130 (138)
T 2enj_A           84 KNV----DLISETTVELYSLAERCRKNNGKTEIWLELKP-QGRMLMNARYFL  130 (138)
T ss_dssp             SSC----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS-SCEEEEEEEECC
T ss_pred             CCC----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-CcEEEEEEEEEE
Confidence            443    89999999999882       34578999998 899999999863

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=93.28  E-value=1  Score=38.48  Aligned_cols=90  Identities=13%  Similarity=0.184  Sum_probs=53.5

Q ss_pred             ceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccccc-cCcEEEEEecCC-C-CCCCCCCCCCCCceeEEEeeec
Q 011161          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI-NPAITIILRMGA-G-GHGVPPLGSPDGRVRYKFASFW  268 (492)
Q Consensus       192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~-~~~i~i~~~~g~-~-~~~~~~~~~~~~~~~~~f~sf~  268 (492)
                      .|++|+|.+++||...-- ....+.|||..|..++.....+. .|-|.+...... + ..|-. ..+.....++.|.+= 
T Consensus        39 ~G~l~LTshRli~~d~~~-~~~s~~lpl~~v~~~e~~~~~f~~s~Ki~l~l~~~~~~~~~gp~-~~s~~~~~kLsFr~G-  115 (140)
T 2hth_B           39 AGTLLLSTHRLIWRDQKN-HECCMAILLSQIVFIEEQAAGIGKSAKIVVHLHPAPPNKEPGPF-QSSKNSYIKLSFKEH-  115 (140)
T ss_dssp             CEEEEEESSEEEEEETTC-CSCCEEEEGGGEEEEEEECCTTSSCCEEEEEECCCCCCSSSCCC-STTSCCEEEEEETTS-
T ss_pred             CCEEEEecCEEEEecCCC-CceEEEEEhHHeeeeeeeccccccCceEEEEecCCCccCCCCCc-ccccCcEEEEEEcCC-
Confidence            499999999999976543 45789999999999999986532 234444443211 0 00000 011112334444442 


Q ss_pred             chHHHHHHHHHHHHhh
Q 011161          269 NRNHALRQLQRTAKNY  284 (492)
Q Consensus       269 ~rd~~~~~l~~~~~~~  284 (492)
                      ..++-+..|.+.+..+
T Consensus       116 g~~eF~~~L~~al~~k  131 (140)
T 2hth_B          116 GQIEFYRRLSEEMTQR  131 (140)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             CChHHHHHHHHHHHHh
Confidence            2467777777776553

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=93.02  E-value=0.46  Score=40.96  Aligned_cols=84  Identities=17%  Similarity=0.190  Sum_probs=55.9

Q ss_pred             cceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccccccCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeecch
Q 011161          191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNR  270 (492)
Q Consensus       191 ~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~f~sf~~r  270 (492)
                      -.|++|+|+.+++|-..--.....+.+||..|.+++...+.+ ..++.|+..--.+       -++....++.|.+=.. 
T Consensus        51 k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~f-g~s~Ki~l~~~p~-------~~~~~~~KLsFk~GGa-  121 (145)
T 2cay_A           51 QRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFL-TRSPRLILFFKDP-------SSSTEFVQLSFRKSDG-  121 (145)
T ss_dssp             SSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSS-SSSCEEEEEESSC-------SSTTCCEEEEESSSCC-
T ss_pred             CccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCcc-ccCceEEEEecCC-------CCCceEEEEEEcCCCc-
Confidence            349999999999997654332368999999999999987653 3344444321110       1223456777777555 


Q ss_pred             HHHHHHHHHHHHh
Q 011161          271 NHALRQLQRTAKN  283 (492)
Q Consensus       271 d~~~~~l~~~~~~  283 (492)
                      ++-+..|.+++++
T Consensus       122 ~eF~~~l~~al~~  134 (145)
T 2cay_A          122 VLFSQATERALEN  134 (145)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            6677777776655

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=87.46  E-value=3.9  Score=42.77  Aligned_cols=54  Identities=15%  Similarity=0.233  Sum_probs=41.1

Q ss_pred             ccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccc---cccC-cEEEEEec
Q 011161          190 LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA---FINP-AITIILRM  243 (492)
Q Consensus       190 ~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~---~~~~-~i~i~~~~  243 (492)
                      .+.|.||+|+.++.|.+..-...-.+-||+.-|..|+|....   .-.+ .|.|.+++
T Consensus        31 ~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~~vek~~~~s~~~~~~~~l~I~CKD   88 (528)
T 1zsq_A           31 AVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKD   88 (528)
T ss_dssp             EEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETT
T ss_pred             ceeEEEEEECCEEEEEccCCCccEEEEeeccceEEEEEcCCCCcCCCCCceEEEEccC
Confidence            577999999999999986433345688999999999997531   1123 68898865

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=86.79  E-value=1.9  Score=44.84  Aligned_cols=53  Identities=17%  Similarity=0.171  Sum_probs=39.5

Q ss_pred             cccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccccccCcEEEEEecC
Q 011161          189 FLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMG  244 (492)
Q Consensus       189 ~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~~~~i~i~~~~g  244 (492)
                      -...|.||+|+.++.|.+.   ....+-||+.-|..|+|.+...-...|.|.+++-
T Consensus        23 ~~~~GtL~lTn~~LiF~~~---~~~e~wi~~~~I~~VeK~~~~~~~~~l~I~CKDf   75 (512)
T 2yf0_A           23 KSLTGTLYLTATHLLFIDS---HQKETWILHHHIASVEKLALTTSGCPLVIQCKNF   75 (512)
T ss_dssp             -CCEEEEEECSSEEEEEES---SSCEEEEEGGGEEEEEECCCBTTBEEEEEEETTS
T ss_pred             CceeEEEEEECCEEEEeCC---CCCceEecccceeEEEEecCCCCCceEEEEecCC
Confidence            4567999999999999983   2345789999999999976432122588888653

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=85.76  E-value=5.2  Score=42.79  Aligned_cols=74  Identities=18%  Similarity=0.184  Sum_probs=48.8

Q ss_pred             ecCCcceeEEeeeee-eec--ccccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccc---cccC-cEEEEEe
Q 011161          170 NLLPDEFVELSYSCV-IER--SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA---FINP-AITIILR  242 (492)
Q Consensus       170 ~lp~~e~l~~~~~c~-l~~--~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~---~~~~-~i~i~~~  242 (492)
                      .+-++|.++...... +..  .-.+.|.||+|+.++.|.+..-...-.+-||+.-|..|+|....   .-.+ .|.|.++
T Consensus        80 ~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CK  159 (657)
T 1lw3_A           80 PLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCK  159 (657)
T ss_dssp             CCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEET
T ss_pred             ccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCCcceEEEecccceEEEEecCCCcccCCCCceEEEEec
Confidence            345666666433221 111  23577999999999999986433345678999999999996521   1123 6888886


Q ss_pred             c
Q 011161          243 M  243 (492)
Q Consensus       243 ~  243 (492)
                      +
T Consensus       160 D  160 (657)
T 1lw3_A          160 D  160 (657)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=83.61  E-value=19  Score=32.99  Aligned_cols=55  Identities=11%  Similarity=0.061  Sum_probs=40.2

Q ss_pred             eeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCCC----CCCceeEEEEEEcccC
Q 011161           48 RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII----WKSTVLGSVIVTVESE  102 (492)
Q Consensus        48 ~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~~----~~dd~IG~~~i~l~~l  102 (492)
                      .+|-+.+.+.+|.|+|++.+.++.   ....|.|++++...-    ..+..+|.+.+||..-
T Consensus        79 ~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~~  140 (220)
T 3l4c_A           79 YKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRY  140 (220)
T ss_dssp             EECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBCT
T ss_pred             EEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcccC
Confidence            467788889999999999999853   345699999874421    1234678888887654

>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B

Probab=83.31  E-value=6.7  Score=31.73  Aligned_cols=92  Identities=15%  Similarity=0.251  Sum_probs=60.5

Q ss_pred             CcceeEEeeeeeeecccccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccccccC--cEEEEEecCCCCCCC
Q 011161          173 PDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP--AITIILRMGAGGHGV  250 (492)
Q Consensus       173 ~~e~l~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~~~--~i~i~~~~g~~~~~~  250 (492)
                      .+|.|+......+.+.-   |.||++..++-+-.+- +..-.+++++.+|...+-.+..  -+  -+.|+.+.|      
T Consensus         5 ~~~~ll~v~~v~yKK~d---GtL~l~~d~i~W~p~~-~~~~~vs~~~~~I~~qq~SP~~--k~KVqLqi~l~~~------   72 (108)
T 1pfj_A            5 SEEVLLIVKKVRQKKQD---GALYLMAERIAWAPEG-KDRFTISHMYADIKCQKISPEG--KAKIQLQLVLHAG------   72 (108)
T ss_dssp             SCCEEEEESCCBCSSCB---CEEEEETTEEEEECSS-SSSCSEEEETTTCCCEEECCSS--SSSCEEEEECSSS------
T ss_pred             chheeEEehhheeecCC---ceEEEEcceEEEccCC-CCCceEEEehhhhhcceeCCCC--CccEEEEEEEeCC------
Confidence            34566665555555532   9999999999987744 3456678899999987766633  12  578887643      


Q ss_pred             CCCCCCCCceeEEEeeec----chHHHHHHHHHHHHh
Q 011161          251 PPLGSPDGRVRYKFASFW----NRNHALRQLQRTAKN  283 (492)
Q Consensus       251 ~~~~~~~~~~~~~f~sf~----~rd~~~~~l~~~~~~  283 (492)
                             +...|.|++-.    .||..=++|.+++..
T Consensus        73 -------~~~~F~Ftn~~~a~~erd~VKd~L~~~l~~  102 (108)
T 1pfj_A           73 -------DTTNFHFSNESTAVKERDAVKDLLQQLLPK  102 (108)
T ss_dssp             -------CEEEEECCCSSCTTHHHHHHHHHHHHHHHH
T ss_pred             -------CceEEEEcCcHHHHHHHHHHHHHHHHHHHH
Confidence                   45678888843    244545566665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	492
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	1e-16
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	7e-16
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	5e-14
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	2e-12
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	3e-12
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-12
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-11
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	2e-11
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	7e-11
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-10
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	8e-10
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-09
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	2e-09
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	4e-09
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-09
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	5e-09
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	2e-08

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 1e-16
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 7   ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 66

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI 126
            + VT++D D       LG V + + S        Y L +        G + L +  I
Sbjct: 67  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLI 124

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.1 bits (176), Expect = 7e-16
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPV 74
           +++ L++AK L  A+     DPY  +TC ++ + S++       P W E F F+V E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71

Query: 75  QIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTL---DSPSGQVCLHIK 124
           ++   I+D D+  +   +G   +    V  EG      Y +   +   G++ + + 
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.6 bits (162), Expect = 5e-14
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV 69
           ++ + +  AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F +
Sbjct: 16  VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 75

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              +   ++ V I+DWD+  ++  +GS+   +   +      W+ L S  
Sbjct: 76  KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQE 125

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (150), Expect = 2e-12
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 12  SAYLIKLELLAAKNL---IGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEF 65
           S++   + +L A  +      ++  T DPY  +        ++ +        P+W E F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 66  NFSVDELPVQ-IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPSGQVCLH 122
            F +D      + +T+ D + +     LG+   TV S   G+   V +   +   ++ L 
Sbjct: 61  EFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIF-NQVTEMVLE 118

Query: 123 IK 124
           + 
Sbjct: 119 MS 120

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.7 bits (149), Expect = 3e-12
 Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMW 61
              TN+   + + +L A++L  ++++G SDPY  +          K+ + +   +   ++
Sbjct: 11  QSTTNT---LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 67

Query: 62  GEEFNFSVDELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSG 117
            E F F +    ++   +   + D +   ++ V+G +++   +EG  G  W    D P  
Sbjct: 68  NELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 127

Query: 118 QVC 120
           Q+ 
Sbjct: 128 QIA 130

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.3 bits (148), Expect = 5e-12
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 11/122 (9%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYA---IITCGSEKRFSSMVPGSR 57
                 D Q N    + + ++ A  L   ++ GTSDPY    ++    +K  + +   + 
Sbjct: 24  QYSLDYDFQNNQ---LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL 80

Query: 58  YPMWGEEFNFSVDELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTL 112
            P++ E+F F V    +    +++ +YD+D   K  ++G   V + +   G     W  L
Sbjct: 81  NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

Query: 113 DS 114
            S
Sbjct: 141 QS 142

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (143), Expect = 2e-11
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT-----CGSEKRFSSMVPGSRYPMWGEEFNFSVD 70
           + + +L AK+L         +PY  I          KR +  V  +  P W + F +S  
Sbjct: 16  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 75

Query: 71  ELP----VQIIVTIYDWDIIWKS--TVLGSVIVTVES-EGQTGAVWYTL 112
                    + +T++D   + +     LG +++ +E+        WY L
Sbjct: 76  HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 124

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.0 bits (142), Expect = 2e-11
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 10/102 (9%)

Query: 31  LNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI 85
            +  S P+  +           +       + YP W   F+  + E  V I + +     
Sbjct: 20  EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV-IQIVLMRAAE 78

Query: 86  IWKSTV---LGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK 124
              S V   +  +    +        W  L  P  +V + ++
Sbjct: 79  DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-PQAKVLMCVQ 119

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.8 bits (139), Expect = 7e-11
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 16  IKLELLAAKNL--IGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNF 67
           +++ +++ + L  +  N N   DP  I+           ++ + +      P W  EF F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 68  SV-DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118
            V       +   + D+D   K+  +G   +      + G     L S +G 
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWN-SLKQGYRHVHLLSKNGD 116

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.8 bits (136), Expect = 2e-10
 Identities = 19/114 (16%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV- 69
           + + ++   +L   + NG SDP+  +          K  + +   +  P + EEF + + 
Sbjct: 17  LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL-DSPSGQVC 120
             D     + ++++D+DI   +  +G   + + ++G+    WY    +   ++ 
Sbjct: 77  HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE 130

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.9 bits (131), Expect = 8e-10
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 20/121 (16%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITC--------------GSEKRFSSMVPGSRYPMW 61
           + + +L A+NL+  + NG SDP+  +                   KR +  V  S  P W
Sbjct: 20  LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79

Query: 62  GEEFNFSV----DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSP 115
            +   +        +   + VT++D+D    +  LG V++ + S         WY L   
Sbjct: 80  NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139

Query: 116 S 116
           +
Sbjct: 140 T 140

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           L+ + +  AK           + Y  +   + K  +  V GS  P W ++F F ++ L +
Sbjct: 3   LLCVGVKKAKFDGA---QEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDL 58

Query: 75  QIIVTIYDWDIIWK---STVLGSVIVTVESEGQTGAVWYTLDSPS----GQVC 120
            + V +++  +IW     TV   +    +S  +    W TLDS +     ++C
Sbjct: 59  GLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEIC 111

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 2e-09
 Identities = 13/103 (12%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           +++ +++AK            PY  +T   + + +     +  P W +     V     +
Sbjct: 8   LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSK 66

Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVES-----EGQTGAVWYTLD 113
           +   ++    +    +LG+  + +         +   V  TL 
Sbjct: 67  LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ 109

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.3 bits (127), Expect = 4e-09
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 12  SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFN 66
           +A L+ + ++ A NL   +L G SDPY   +  S     +KR +S+   +  P + E   
Sbjct: 18  TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77

Query: 67  FSV---DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTG-AVWYTL-DSPSGQVC 120
           F V       V + + + D+D I  + V+G   V  E+    G   W  +  +P   V 
Sbjct: 78  FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE 136

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.3 bits (127), Expect = 4e-09
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-----SSMVPGSRYPMWGEEFNFSVD 70
           + + +L AKNL   ++ G SDPY  I      +      +++   +  P + E F+F V 
Sbjct: 27  LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86

Query: 71  ELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT-LDSPSGQVC 120
              +Q   ++VT+ D+D I K+  +G V V   S G     W   L +P   + 
Sbjct: 87  FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 52.6 bits (125), Expect = 5e-09
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 26/140 (18%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANL-----------NGTSDPYAIITCGSEKRF 49
           MV F G        L+K+++  A +L                    DPY  +     +  
Sbjct: 1   MVVFNG--------LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG 52

Query: 50  SSMV-PGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVE----SEGQ 104
            +     +  P W +EF   V     +I + ++    I     + +  +  E    +  +
Sbjct: 53  QTATKQKTNSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSR 111

Query: 105 TGAVWYTLDSPSGQVCLHIK 124
               W  L+ P G+V + I 
Sbjct: 112 HFEDWIDLE-PEGKVYVIID 130

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 16  IKLELLAAKNLIGANLNG-TSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV-- 69
             + +  A+ L   +    TSDPY  +T       K  + ++  +  P + E F F    
Sbjct: 24  FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPSG 117
                 + +  TI  +D   +  ++G V++ +   E   G +    +  SG
Sbjct: 84  YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	492
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.84
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.81
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.77
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.75
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.74
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.71
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.69
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.68
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.67
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.67
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.67
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.62
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.59
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.58
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.56
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.55
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.55
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.51
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.43
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.32
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	95.19
d1t77a2	110	Lipopolysaccharide-responsive and beige-like ancho	93.9
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	91.67
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	88.62
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	87.09
d2hthb1	129	Vacuolar protein sorting protein 36, VPS36 {Human	86.75

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.2e-21  Score=162.65  Aligned_cols=115  Identities=23%  Similarity=0.435  Sum_probs=105.1

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCce
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~   91 (492)
                      +-|.|+|+|++|++|+.++..|.+||||++.+++++.+|+++.++.||.|+|+|.|.+.++...|.|+|||++..+++++
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~~   83 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDF   83 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcce
Confidence            45899999999999999999999999999999999999999999999999999999998877889999999999999999


Q ss_pred             eEEEEEEcccCCCcccEEEEccC------CCceEEEEEEee
Q 011161           92 LGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI  126 (492)
Q Consensus        92 IG~~~i~l~~l~~~~~~w~~L~~------~~G~i~l~l~~~  126 (492)
                      ||++.+++.++......|+.|..      ..|+|++++++.
T Consensus        84 lG~~~i~l~~l~~~~~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          84 LGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             CCBCEEEGGGCCSSCCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             EEEEEEEHHHCCCCCceEEEccccCCCCceeEEEEEEEEEE
Confidence            99999999999776789998865      248888888775

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.81  E-value=1.4e-19  Score=156.64  Aligned_cols=120  Identities=22%  Similarity=0.383  Sum_probs=104.7

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccC-CCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCC
Q 011161            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (492)
Q Consensus         9 ~~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~   87 (492)
                      +....|+|+|+|++|++|+.++..+.+||||+++++....+|++++ ++.||.|||+|.|.+.+....|.|+|||+|..+
T Consensus         5 ~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~   84 (136)
T d1wfja_           5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGT   84 (136)
T ss_dssp             CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCT
T ss_pred             CCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCC
Confidence            4456799999999999999999999999999999999888999886 589999999999999887778999999999999


Q ss_pred             CCceeEEEEEEcccC---CCcccEEEEccCC---CceEEEEEEeeeC
Q 011161           88 KSTVLGSVIVTVESE---GQTGAVWYTLDSP---SGQVCLHIKTIKL  128 (492)
Q Consensus        88 ~dd~IG~~~i~l~~l---~~~~~~w~~L~~~---~G~i~l~l~~~~~  128 (492)
                      +|++||++.|+|.++   +.....|+.|...   .|+|++.+.+.+.
T Consensus        85 ~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_          85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeC
Confidence            999999999999987   3445689998542   3888888888754

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.77  E-value=2.4e-18  Score=148.80  Aligned_cols=113  Identities=18%  Similarity=0.258  Sum_probs=98.7

Q ss_pred             ceEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEECCee-eeeeccCCCCCCeeccEEEEEeeCCCcEEEEEE
Q 011161           13 AYLIKLELLAAKNLIGAN-----------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTI   80 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d-----------~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v   80 (492)
                      .|.|.|+|++|++|++++           ..+.+||||++.+++.. .+|+++.++.||.|||+|.|.+.+ ...|.|+|
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V   83 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELAV   83 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEEEE
Confidence            589999999999999764           36678999999998866 589999999999999999999865 46799999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC----CCcccEEEEccCCCceEEEEEEeee
Q 011161           81 YDWDIIWKSTVLGSVIVTVESE----GQTGAVWYTLDSPSGQVCLHIKTIK  127 (492)
Q Consensus        81 ~d~d~~~~dd~IG~~~i~l~~l----~~~~~~w~~L~~~~G~i~l~l~~~~  127 (492)
                      ||++.+++|++||.+.++|.++    ....+.|++|++ .|++++.+.+.+
T Consensus        84 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p-~G~v~l~v~~~~  133 (136)
T d1gmia_          84 FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-EGKVYVIIDLSG  133 (136)
T ss_dssp             EECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-SCEEEEEEEEEE
T ss_pred             EEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC-CcEEEEEEEEEe
Confidence            9999999999999999999987    233568999986 799999988765

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.5e-18  Score=144.91  Aligned_cols=113  Identities=19%  Similarity=0.334  Sum_probs=93.9

Q ss_pred             ceEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeccEEEEEeeCCC-cEEEEEEEEcCC
Q 011161           13 AYLIKLELLAAKNLIGA---NLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDI   85 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~---d~~g~sDPyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~i~~~~-~~L~i~v~d~d~   85 (492)
                      .+.|+|+|++|+||+..   |..|.+||||++.++.   ++.+|+++.++.||.|||+|.|.+.++. ..|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            57899999999999875   3468899999999864   5678999999999999999999997654 469999999986


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccCC-CceEEEEEEee
Q 011161           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-SGQVCLHIKTI  126 (492)
Q Consensus        86 ~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~-~G~i~l~l~~~  126 (492)
                      . ++++||++.++|.++  +...+.||+|.+. .|++++++++.
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~  124 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVA  124 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECC
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEE
Confidence            5 578999999999998  5567789999763 36666666554

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=4.6e-18  Score=146.15  Aligned_cols=102  Identities=27%  Similarity=0.487  Sum_probs=90.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeccCCCCCCeeccEEEEEeeCC--CcEEEEEEEEcCC
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDI   85 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~i~~~--~~~L~i~v~d~d~   85 (492)
                      .+.|.|+|++|+||+.++..|.+||||++++     +..+++|+++.++.||.|||+|.|.+...  ...|.|+|||+|.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            5789999999999999999999999999998     44567899999999999999999998543  3469999999999


Q ss_pred             CCCCceeEEEEEEcccC-CCcccEEEEccC
Q 011161           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (492)
Q Consensus        86 ~~~dd~IG~~~i~l~~l-~~~~~~w~~L~~  114 (492)
                      .+++++||++.+++.++ ....+.||+|.+
T Consensus        94 ~~~d~~iG~~~i~l~~l~~~~~~~W~~L~~  123 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQKAGVDGWFKLLS  123 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTTCCEEEEEECBC
T ss_pred             CCCCcEeEEEEEeHHHcCCCCCCeEEECCC
Confidence            99999999999999997 445678999976

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.4e-17  Score=139.58  Aligned_cols=89  Identities=11%  Similarity=0.231  Sum_probs=81.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCcee
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~I   92 (492)
                      .+.|.|+|++|++|+..+..+.+||||++.++++..+|+++.++.||.|||.|.|.+.+ ...|.|+|||++.+++|++|
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~i   83 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLL   83 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEE
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceE
Confidence            47899999999999998888999999999999999999999999999999999999865 56899999999999999999


Q ss_pred             EEEEEEcccC
Q 011161           93 GSVIVTVESE  102 (492)
Q Consensus        93 G~~~i~l~~l  102 (492)
                      |++.++|.++
T Consensus        84 G~~~i~L~~l   93 (133)
T d2nq3a1          84 GTAALDIYET   93 (133)
T ss_dssp             EEEEEEHHHH
T ss_pred             EEEEEEHHHh
Confidence            9999999876

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=7.6e-17  Score=140.35  Aligned_cols=103  Identities=23%  Similarity=0.427  Sum_probs=90.3

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcCC
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDI   85 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d~   85 (492)
                      ..+.|.|+|++|+||+.++..+.+||||++++   +....+|++++++.||.|||+|.|.+..   ....|.|+|||++.
T Consensus        32 ~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~  111 (143)
T d1rsya_          32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC
Confidence            34689999999999999999999999999998   4556789999999999999999998742   24679999999999


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccC
Q 011161           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (492)
Q Consensus        86 ~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~  114 (492)
                      .+++++||++.++|.++  +.....||+|++
T Consensus       112 ~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_         112 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            99999999999999998  555679999975

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=5.1e-16  Score=132.97  Aligned_cols=104  Identities=21%  Similarity=0.312  Sum_probs=84.0

Q ss_pred             eEEEEEEEEeecCCCC--CCCCCCCcEEEEEE-----CCeeeeeeccCCC-CCCeeccEEEEEeeCC-CcEEEEEEEEcC
Q 011161           14 YLIKLELLAAKNLIGA--NLNGTSDPYAIITC-----GSEKRFSSMVPGS-RYPMWGEEFNFSVDEL-PVQIIVTIYDWD   84 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~--d~~g~sDPyv~v~~-----~~~~~~T~~~~~t-~nP~W~e~f~f~i~~~-~~~L~i~v~d~d   84 (492)
                      ..|.|+|++|++|+..  +..+.+||||++.+     +..+.+|++++++ +||.|||+|.|.+..+ ...|.|+|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            4799999999999654  45788999999998     3466789988655 7999999999988543 356999999999


Q ss_pred             CCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161           85 IIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (492)
Q Consensus        85 ~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (492)
                      ..+++++||++.++|..+..+ ..|++|..+.|+
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g-~~~~~L~~~~g~  116 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG-YRHVHLLSKNGD  116 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE-EEEEEEECTTSC
T ss_pred             CCCCCcEEEEEEEEEeccCCC-CEEEECCCCCcC
Confidence            999999999999999999654 579999775554

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2.5e-17  Score=143.11  Aligned_cols=104  Identities=25%  Similarity=0.421  Sum_probs=88.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--------------eeeeeeccCCCCCCeeccEEEEEeeC----CCc
Q 011161           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS--------------EKRFSSMVPGSRYPMWGEEFNFSVDE----LPV   74 (492)
Q Consensus        13 ~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~--------------~~~~T~~~~~t~nP~W~e~f~f~i~~----~~~   74 (492)
                      .+.|.|+|++|+||+.++..|.+||||++++..              .+.+|++++++.||.|||.|.|....    ...
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            468999999999999999999999999999731              12478889999999999999997421    345


Q ss_pred             EEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC
Q 011161           75 QIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (492)
Q Consensus        75 ~L~i~v~d~d~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~~  116 (492)
                      .|.|+|||++.++++++||++.|+|.++  +.....||+|.++.
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            7999999999999999999999999998  45567999998753

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.8e-16  Score=134.99  Aligned_cols=97  Identities=22%  Similarity=0.383  Sum_probs=84.9

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCceeE
Q 011161           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (492)
Q Consensus        14 ~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~IG   93 (492)
                      +.|.|+|++|++|.+++   ..||||.+.+++.+.+|.+++ +.||.|||+|.|.+.++...|.|+|||++.. +|++||
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG   76 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVG   76 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceE
Confidence            57999999999999876   579999999999999998886 4599999999999988888899999999876 689999


Q ss_pred             EEEEEcccCC----CcccEEEEccCC
Q 011161           94 SVIVTVESEG----QTGAVWYTLDSP  115 (492)
Q Consensus        94 ~~~i~l~~l~----~~~~~w~~L~~~  115 (492)
                      ++.|+|.++.    .....||+|..+
T Consensus        77 ~~~I~L~~l~~~~~~~~~~W~~L~~~  102 (128)
T d2cjta1          77 TVWIPLRTIRQSNEEGPGEWLTLDSQ  102 (128)
T ss_dssp             EEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred             EEEEEehhhccCCCCCCCeeEECCcc
Confidence            9999999982    335689999763

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.3e-16  Score=136.47  Aligned_cols=104  Identities=23%  Similarity=0.365  Sum_probs=87.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEEcC
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d~d   84 (492)
                      ...+.|.|+|++|+||+.++..+.+||||++++.   ..+.+|++++++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        15 ~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~   94 (130)
T d1dqva1          15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   94 (130)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence            4567999999999999999999999999999983   4567899999999999999999998532   345999999999


Q ss_pred             CCCCCceeEEEEEEcccC----CCcccEEEEccC
Q 011161           85 IIWKSTVLGSVIVTVESE----GQTGAVWYTLDS  114 (492)
Q Consensus        85 ~~~~dd~IG~~~i~l~~l----~~~~~~w~~L~~  114 (492)
                      .++++++||++.|++...    ......|++|.+
T Consensus        95 ~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          95 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             CCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            999999999999986432    334567999975

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1e-15  Score=129.92  Aligned_cols=102  Identities=24%  Similarity=0.424  Sum_probs=81.8

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeccCCCCCCeeccEEEEE-eeC---CCcEEEEEEEE
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~-i~~---~~~~L~i~v~d   82 (492)
                      ..+.|.|+|++|+||+..+..+.+||||++++     ...+++|++++++.||.|||+|.|. +..   ....|.|+|||
T Consensus        12 ~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d   91 (125)
T d2bwqa1          12 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   91 (125)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEE
Confidence            34789999999999999999999999999997     2345689999999999999999997 332   23469999999


Q ss_pred             cCCCC--CCceeEEEEEEcccC-CCcccEEEEcc
Q 011161           83 WDIIW--KSTVLGSVIVTVESE-GQTGAVWYTLD  113 (492)
Q Consensus        83 ~d~~~--~dd~IG~~~i~l~~l-~~~~~~w~~L~  113 (492)
                      ++..+  ++++||++.+++.++ .....+||+|+
T Consensus        92 ~~~~~~~~~~~iG~~~i~l~~~~~~~~~~Wy~L~  125 (125)
T d2bwqa1          92 QARVREEESEFLGEILIELETALLDDEPHWYKLQ  125 (125)
T ss_dssp             C-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             CCCCCCCCCeeEEEEEEEchhcCCCCCCEEEeCc
Confidence            99763  467999999999998 34457899984

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.3e-15  Score=127.69  Aligned_cols=101  Identities=15%  Similarity=0.198  Sum_probs=85.7

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEEcC
Q 011161           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~----~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d~d   84 (492)
                      ..+.|.|+|++|++|+.   .+.+||||++.+..    ...+|++++++.||.|+|+|.|.+..   ....|.|+|||++
T Consensus        24 ~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~  100 (138)
T d1wfma_          24 QKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD  100 (138)
T ss_dssp             TTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeec
Confidence            45789999999999953   56789999999832    34689999999999999999999853   2456999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 011161           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (492)
Q Consensus        85 ~~~~dd~IG~~~i~l~~l--~~~~~~w~~L~~~  115 (492)
                      .++++++||++.|+|.++  ......|++|.++
T Consensus       101 ~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~  133 (138)
T d1wfma_         101 RFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             SSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             ccccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence            999999999999999988  4556899999874

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=1.2e-14  Score=125.13  Aligned_cols=104  Identities=17%  Similarity=0.332  Sum_probs=87.4

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d   82 (492)
                      +..+.|.|+|++|+||+..+..+.+||||++++.     ..+++|++++++.||.|||+|.|.+...   ...|.|.|||
T Consensus        12 ~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~   91 (137)
T d2cm5a1          12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD   91 (137)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeee
Confidence            3457899999999999999989999999999972     3456899999999999999999998532   3469999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 011161           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~  114 (492)
                      ++..+++++||++.+++..+......|++|.+
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~  123 (137)
T d2cm5a1          92 YDIGKSNDYIGGCQLGISAKGERLKHWYECLK  123 (137)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEEEeCccccCcchhhhhhHhh
Confidence            99999999999999999877544556766544

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1.2e-15  Score=131.78  Aligned_cols=102  Identities=19%  Similarity=0.382  Sum_probs=78.5

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC--GS---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~--~~---~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d   82 (492)
                      +..+.|.|+|++|+||+.++..+.+||||++++  +.   .+++|++++++.||.|||+|.|.+...   ...|.|.|||
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d   91 (138)
T d1w15a_          12 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLD   91 (138)
T ss_dssp             TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEe
Confidence            345789999999999999999999999999997  22   245799999999999999999997432   3459999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEc
Q 011161           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTL  112 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l~~~~~~w~~L  112 (492)
                      ++..+++++||++.+++...+....+|++|
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~~~~~hW~~l  121 (138)
T d1w15a_          92 SERGSRNEVIGRLVLGATAEGSGGGHWKEI  121 (138)
T ss_dssp             CCTTSCCEEEEEEEESTTCCSHHHHHHHHH
T ss_pred             CCCCCCCCEEEEEEEcchhCCchHHHHHHH
Confidence            999999999999999998764444445543

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=2e-14  Score=126.81  Aligned_cols=104  Identities=33%  Similarity=0.472  Sum_probs=86.8

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeccCCCCCCeeccEEEEEeeCC---CcEEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~i~~~---~~~L~i~v~d   82 (492)
                      +..+.|.|+|++|+||+..+..+.+||||++++.  +   ..++|++++++.||.|||+|.|.+...   ...|.|+|||
T Consensus        22 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d  101 (157)
T d1uowa_          22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (157)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcc
Confidence            3457999999999999999999999999999973  2   234799999999999999999998542   3469999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--------------CCcccEEEEccC
Q 011161           83 WDIIWKSTVLGSVIVTVESE--------------GQTGAVWYTLDS  114 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l--------------~~~~~~w~~L~~  114 (492)
                      ++.++++++||++.|++...              .....+|++|.+
T Consensus       102 ~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_         102 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             CCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             cCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            99999999999999999764              233457888865

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.8e-14  Score=123.03  Aligned_cols=91  Identities=19%  Similarity=0.299  Sum_probs=78.2

Q ss_pred             CceEEEEEEEEeecCCCCCCCCC-CCcEEEEEE---CCeeeeeeccCCCCCCeeccEEEEEe-eC---CCcEEEEEEEEc
Q 011161           12 SAYLIKLELLAAKNLIGANLNGT-SDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIYDW   83 (492)
Q Consensus        12 ~~~~L~V~Vi~a~~L~~~d~~g~-sDPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~i-~~---~~~~L~i~v~d~   83 (492)
                      ....|.|+|++|+||+.++..+. +||||++.+   ...+.+|++++++.||.|||+|.|.. ..   ....|.|+|||+
T Consensus        20 ~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~   99 (138)
T d1ugka_          20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEEC
Confidence            34689999999999999886654 799999998   45567899999999999999999973 32   134699999999


Q ss_pred             CCCCCCceeEEEEEEcccC
Q 011161           84 DIIWKSTVLGSVIVTVESE  102 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l  102 (492)
                      |.++++++||++.++|.++
T Consensus       100 d~~~~~~~iG~~~i~L~~~  118 (138)
T d1ugka_         100 DRFSRDDIIGEVLIPLSGI  118 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTC
T ss_pred             CCCCCCcEEEEEEEEcccc
Confidence            9999999999999999987

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=7.6e-14  Score=117.79  Aligned_cols=103  Identities=15%  Similarity=0.256  Sum_probs=82.3

Q ss_pred             EEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeeccCCCCCCeeccEEEEEeeCCCcEEEEEEEEcCCCCCCce
Q 011161           17 KLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (492)
Q Consensus        17 ~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~~-----~~~T~~~~~t~nP~W~e~f~f~i~~~~~~L~i~v~d~d~~~~dd~   91 (492)
                      .|.+..+..++  ...+.+||||.|.+++.     ..+|+++++|+||.|||+|.|.+.+ ...|.|.|||+|    +++
T Consensus         8 ~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d----d~~   80 (123)
T d1bdya_           8 SFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA----EDP   80 (123)
T ss_dssp             EEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET----TEE
T ss_pred             EEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc----ccc
Confidence            34444444443  34788999999998542     3468888999999999999999876 578999999986    679


Q ss_pred             eEEEEEEcccC-------CCcccEEEEccCCCceEEEEEEeee
Q 011161           92 LGSVIVTVESE-------GQTGAVWYTLDSPSGQVCLHIKTIK  127 (492)
Q Consensus        92 IG~~~i~l~~l-------~~~~~~w~~L~~~~G~i~l~l~~~~  127 (492)
                      +|.+.+.+..+       +...+.|++|.+ .|++++.+++..
T Consensus        81 ~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~-~Gkl~l~v~~f~  122 (123)
T d1bdya_          81 MSEVTVGVSVLAERCKKNNGKAEFWLDLQP-QAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEHHHHHHHHHTTTTEEEEEEECBS-SCEEEEEEEEEE
T ss_pred             cCccEEehhheeeccccCCCcccEEEeCCC-CEEEEEEEEEec
Confidence            99999999876       345678999985 899999998763

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=5.6e-15  Score=128.61  Aligned_cols=104  Identities=27%  Similarity=0.401  Sum_probs=85.7

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeccEEEEEeeC---CCcEEEEEEEE
Q 011161           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (492)
Q Consensus        11 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~i~~---~~~~L~i~v~d   82 (492)
                      +..+.|.|+|++|+||+..+..+.+||||++++..     .+++|++++++.||.|||+|.|.+..   ....|.|.|||
T Consensus        17 ~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d   96 (145)
T d1dqva2          17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD   96 (145)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred             CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEe
Confidence            34589999999999999999899999999999742     24589999999999999999998743   23459999999


Q ss_pred             cCCCCCCceeEEEEEEcccCC-CcccEEEEccC
Q 011161           83 WDIIWKSTVLGSVIVTVESEG-QTGAVWYTLDS  114 (492)
Q Consensus        83 ~d~~~~dd~IG~~~i~l~~l~-~~~~~w~~L~~  114 (492)
                      ++..+++++||++.|++..+. .....|++|..
T Consensus        97 ~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~  129 (145)
T d1dqva2          97 YDCIGHNEVIGVCRVGPEAADPHGREHWAEMLA  129 (145)
T ss_dssp             CCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSS
T ss_pred             cCCCCCCcEEEEEEECchHcCchhhHHHHHHHh
Confidence            999999999999999998763 23445766543

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.2e-11  Score=103.80  Aligned_cols=95  Identities=17%  Similarity=0.263  Sum_probs=72.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC------Ceeeeeec--cCCCCCCeeccE-EEE-EeeCCC-cEEEEEEEEc
Q 011161           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSM--VPGSRYPMWGEE-FNF-SVDELP-VQIIVTIYDW   83 (492)
Q Consensus        15 ~L~V~Vi~a~~L~~~d~~g~sDPyv~v~~~------~~~~~T~~--~~~t~nP~W~e~-f~f-~i~~~~-~~L~i~v~d~   83 (492)
                      +|.|+|++|++|+..    ..||||++.+-      ..+.+|++  ..++.||.|||. |.+ .+..+. ..|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999765    47999999972      22334444  366899999875 444 344333 3699999997


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 011161           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (492)
Q Consensus        84 d~~~~dd~IG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (492)
                      +    ++|||++.++++.+..+ .+|++|..+.|+
T Consensus        78 d----~~~lG~~~ipl~~l~~G-yR~vpL~~~~g~  107 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSG-YHHLCLHSESNM  107 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCE-EEEEEEECTTCC
T ss_pred             C----CCEEEEEEEEcccCcCC-ceEEEccCCCcC
Confidence            5    68999999999999664 688999886665

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.11  Score=41.65  Aligned_cols=55  Identities=15%  Similarity=0.222  Sum_probs=43.0

Q ss_pred             ccceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccccc---cC-cEEEEEecC
Q 011161          190 LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI---NP-AITIILRMG  244 (492)
Q Consensus       190 ~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~---~~-~i~i~~~~g  244 (492)
                      ++.|.||+|+-++.|.+.--...-.+.||+.-|..|+|......   .+ .|+|.+++.
T Consensus        27 ~~~G~L~lTnyrliF~~~~~~~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L~I~CKDf   85 (125)
T d1zsqa1          27 AVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDI   85 (125)
T ss_dssp             EEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTT
T ss_pred             ccceEEEEEeeEEEEEcCCCCccEEEEeccceeeeeeecccccccCCccccEEEEeccC
Confidence            56799999999999998665555567899999999998764322   22 799999764

>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.047  Score=42.96  Aligned_cols=67  Identities=16%  Similarity=0.215  Sum_probs=48.4

Q ss_pred             eEEeeeeeeec-ccccceEEEEecCeeEEEeccCC--------------ceeEEEEeccceeeEeecccccccC-cEEEE
Q 011161          177 VELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFS--------------RQMKVIIPIGDIDEIQRSQHAFINP-AITII  240 (492)
Q Consensus       177 l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~~~g--------------~~~~~~i~~~~I~~i~k~~~~~~~~-~i~i~  240 (492)
                      ++-+..|.|.. ..-..|++.++.++++|.+.-..              ......+|++||..|-+..- .+-+ ||+|.
T Consensus         3 v~~s~~c~lItp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~-ll~~~alEif   81 (110)
T d1t77a2           3 VSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRY-LLQNTALEIF   81 (110)
T ss_dssp             CSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEE-TTEEEEEEEE
T ss_pred             EEEEeeEEEEEecceEEEEEEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHhhhh-cCCceEEEEE
Confidence            34456788877 55667999999999999874211              11234699999999998553 2334 99999


Q ss_pred             EecC
Q 011161          241 LRMG  244 (492)
Q Consensus       241 ~~~g  244 (492)
                      +.+|
T Consensus        82 ~~~~   85 (110)
T d1t77a2          82 MANR   85 (110)
T ss_dssp             ETTS
T ss_pred             EcCC
Confidence            9764

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=1  Score=34.65  Aligned_cols=65  Identities=15%  Similarity=0.267  Sum_probs=47.5

Q ss_pred             ceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccccccCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeecch
Q 011161          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNR  270 (492)
Q Consensus       192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~f~sf~~r  270 (492)
                      .|.||++..++-|..+- +...++.+++.+|...+-.+...==+.+.|+.++|             ....|.|++-..+
T Consensus        21 ~GtL~l~~d~l~W~p~~-~~~~~v~~~~~~I~~~q~Spe~s~Kv~Lkiv~~~~-------------~s~~F~Ftn~~~~   85 (108)
T d2rnrb1          21 DGALYLMAERIAWAPEG-KDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAG-------------DTTNFHFSNESTA   85 (108)
T ss_dssp             EEEEEECSSEEEEEESS-CSSCSEEEETTTEEEEEECCTTCSSEEEEEEETTS-------------CEEEEEECCTTTH
T ss_pred             CcEEEEEcCeEEEEcCC-CCCceEEEEhhhhhceecCCCCcccceeEEEEeCC-------------CeEEEEECChHHH
Confidence            49999999999999865 44556899999998888777442122688888654             3457777775544

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.09  E-value=1  Score=35.91  Aligned_cols=49  Identities=18%  Similarity=0.337  Sum_probs=35.9

Q ss_pred             ceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccccccCcEEEEE
Q 011161          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIIL  241 (492)
Q Consensus       192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~~~~i~i~~  241 (492)
                      .|++|+|+++++|-...--....+.+||..|..++-..+. +..+..|+.
T Consensus        44 ~G~l~LTshRiI~v~~~~~~~~S~slpL~~i~~~e~~~~~-~~ss~KI~l   92 (130)
T d2caya1          44 RGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGF-LTRSPRLIL   92 (130)
T ss_dssp             SEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSS-SSSSCEEEE
T ss_pred             CceEEEEeeEEEEecCCCCceeEEEeEhhheeEeEEEccc-cCCCCeEEE
Confidence            4999999999999875433345699999999999977653 333444443

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.75  E-value=4.2  Score=32.03  Aligned_cols=41  Identities=12%  Similarity=0.167  Sum_probs=33.7

Q ss_pred             ceEEEEecCeeEEEeccCCceeEEEEeccceeeEeecccccc
Q 011161          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI  233 (492)
Q Consensus       192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~I~~i~k~~~~~~  233 (492)
                      .|++|+|+++++|-...-. ...+.+||..|..++...+.+.
T Consensus        35 ~G~l~LTthRli~~~~~~~-~~s~~lpl~~i~~~e~~~~~fg   75 (129)
T d2hthb1          35 AGTLLLSTHRLIWRDQKNH-ECCMAILLSQIVFIEEQAAGIG   75 (129)
T ss_dssp             CEEEEEESSEEEEEETTCC-SCCEEEEGGGEEEEEEECCTTS
T ss_pred             ceEEEEEeceEEEecCCCC-ceEEEEEhHHceeeeEEccccc
Confidence            3999999999999865433 4678999999999998876643