Citrus Sinensis ID: 011164

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--
Protein Sequence
MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYARL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEccccccccEEEEcccccccccHHHHHHccccccEEEEEEccccccccccccccccccccEEEEEEEccccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEccccEEEEEccccccHHHHHHHHccccccEEEEEEcccccccccccccccccccccccccHHHHHHcccccccEEEcccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccccEEEEcccccccHHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHcccccccEEcHHHcEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccEEEEcccccccHHHHHHHHHcccccEEEEEEcHHHccccccEcccEcccccEEEEEEEEEccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEcccccEEEEEccccccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEccccccccccccEEEEEEEEEcccccEEEccccccccccEEEEEccccccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccEEEEEEEEEEcccccccEEEcccccHHHHHHHHHcccHEEccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdedfdipaanemdadmdlpddapmmkvgeekeignQGLKKKLVkegegwdtpengdevevhytgtlldgtqfdssrdrstpfkftlgqgnvikgWDIGIKTmkkgenavftippelaygesgspptippnatlqfDVELLSWTSVKDICKDGGIIKKILKegekwenpkdlDEVLVNYEARLEdgmvvgkadgveftvkdghfcPTLAKAVKTMKKGEKVLLAVkpqygfgekgksasgnegavppnaTLQIALELVSWKTVSEITDDKKVIKKILKegdgferpnegaVVKVKLIGklqdgtvfvkkgHSEEEqlfefktdeeQVIDGLDRAVITMKKNEVALLTIapeyafgsaesqqelavvppnstvHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYARL
Flexible Loop (DISEMBL)
mdedfdipaanemdadmdlpDDAPMMKVGeekeignqglkkKLVKEgegwdtpengdEVEVHYTGTLLDGTQFDSSRDRSTpfkftlgqgnvikGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKIlkegekwenpkdlDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKtvseitddkkVIKKIlkegdgferpnegavVKVKLIGKLQDGTVFVKKGHSEEeqlfefktdeeqVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSfekekeswdmNTEEKIeaagkkkeqgntlfkagkyaraskrYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVqqqkkflllpifNIYARL
Low Complexity Region (SEG)
MDEDFDIPAANEmdadmdlpddapmmKVGEEKEIGNQglkkklvkegegWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVkdickdggiikkilkegekWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTeekieaagkkkeQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYARL
Disordered region (IsUnstruct)
**********************************************************VEVHYTGTLLDGT**********PFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY***********NATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF*****************ATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSA****ELAVVPPNSTVHYEVELVSF****************************FKAGKYARASKRYEKAVKYIEYDTSFGD****QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYA**
Disordered Region (DISOPRED)
****FDI***NE*******P**A**MKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEG*KWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK*********PPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ****VVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY**************LKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYARL
Disordered Region (DISEMBL)
MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGE*********GAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYARL
Disordered Region (DISPRO)
*************DADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYARL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYARL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	492	2.2.26 [Sep-21-2011]
Q38931	551	Peptidyl-prolyl cis-trans	yes	no	0.961	0.858	0.829	0.0
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.932	0.794	0.804	0.0
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.959	0.844	0.786	0.0
Q02790	459	Peptidyl-prolyl cis-trans	yes	no	0.626	0.671	0.369	8e-51
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	no	0.626	0.671	0.375	1e-50
P30416	458	Peptidyl-prolyl cis-trans	yes	no	0.626	0.672	0.363	3e-48
Q9QVC8	458	Peptidyl-prolyl cis-trans	yes	no	0.626	0.672	0.360	5e-48
P27124	458	Peptidyl-prolyl cis-trans	yes	no	0.626	0.672	0.372	7e-46
Q7DMA9	635	Peptidyl-prolyl cis-trans	no	no	0.882	0.683	0.302	7e-46
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	no	0.508	0.547	0.402	1e-44

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/476 (82%), Positives = 429/476 (90%), Gaps = 3/476 (0%)

Query: 1   MDEDFDIP--AANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           MD +F++P       D DMD  D A  +KVGEEKEI  QGLKKKL+KEGEG++TPENGDE
Sbjct: 1   MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDE 59

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGT+FDSSRDR+TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELA
Sbjct: 60  VEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELA 119

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YGESGSPPTIP NATLQFDVELL W SVKDICKDGG+ KKIL  GEKWENPKDLDEVLV 
Sbjct: 120 YGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVK 179

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK A
Sbjct: 180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPA 239

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATL+I LELVSWKTVSE+TDD KV+KK+LKEGDG+ERPNEGAVVKVKLIG
Sbjct: 240 SAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS E
Sbjct: 300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           SQQELAVVPPNSTV YEV+L++F+KE+ESWDMNTEEKIEAA KKKE+GN+ FK GKY+ A
Sbjct: 360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           SKRYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKV
Sbjct: 420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKV 475

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/461 (80%), Positives = 420/461 (91%), Gaps = 2/461 (0%)

Query: 16  DMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDS 75
           D D  D AP +K+GEE EIG  GLKKKLVKE E WDTPENGDEVEVHYTGTLLDGT+FDS
Sbjct: 25  DNDEADSAPYLKIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDS 84

Query: 76  SRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQ 135
           SRDR TPFKFTLGQG+VIKGWD+GIKTMKKGENA+FTIPPELAYGE+GSPPTIPPNATLQ
Sbjct: 85  SRDRGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGSPPTIPPNATLQ 144

Query: 136 FDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGV 195
           FDVEL++W SVKDIC DGG+ KKI+ EGEKWE PKDLDEV V YEARLEDG +VGK+DGV
Sbjct: 145 FDVELIAWRSVKDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTIVGKSDGV 204

Query: 196 EFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSAS-GNEGAVPPNATLQIA 254
           EFTVK+GHFCP L+KAVKTMK+GEKVLL VKPQYGFGE G+ AS G + A+PPNATLQI 
Sbjct: 205 EFTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAAIPPNATLQID 264

Query: 255 LELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDG-TVFVKKGHSE 313
           LELVSWKTV E+TDD+KVIKKILKEG+G+ERPNEGA+VK+KLIGKLQDG TVFVKKGH E
Sbjct: 265 LELVSWKTVVEVTDDRKVIKKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEE 324

Query: 314 EEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVH 373
           +E+ FEFK DEEQVI+GL++AV+ MKK EVAL+TI+PEYAFGS+ES+QELAV+PPNSTV+
Sbjct: 325 DEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVY 384

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
           YEVELVSF KEKESWDMNT+E+IEAAGKKKE+GN LFKAGKYARASKRYE+ VKYIEYD+
Sbjct: 385 YEVELVSFIKEKESWDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDS 444

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           +F +EEKK++K LK+ACNLN+AACKLKLKDYK+A KL TKV
Sbjct: 445 TFDEEEKKKSKDLKIACNLNDAACKLKLKDYKEAAKLSTKV 485

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/478 (78%), Positives = 416/478 (87%), Gaps = 6/478 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPD----DAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENG 56
           MD+DFDIPA ++M     + D    + P MKVGEE EIG QGLKKKL+KEGEGWDTPE G
Sbjct: 1   MDDDFDIPAGDDMMMGDGMGDFGGAEGPGMKVGEENEIGKQGLKKKLLKEGEGWDTPEVG 60

Query: 57  DEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPE 116
           DEVEVHYTGTLLDG +FDSSRDR   FKF LGQG VIKGWD GIKTMKKGENA+FTIPPE
Sbjct: 61  DEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPE 120

Query: 117 LAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVL 176
           LAYGESGSPPTIP NATLQFDVELLSWTSV+DI KDGGI KKILKEG+KWENPKD DEV 
Sbjct: 121 LAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVF 180

Query: 177 VNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236
           V YEARLEDG VV K++GVEFTVKDGH CP LAKAVKTMKKGEKVLLAVKPQYGFGE G+
Sbjct: 181 VKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGR 240

Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
            A+G  GAVPPNA+L I LELVSWKTV+EI DDKK++KK+LKE +G+ERPNEGAVV VK+
Sbjct: 241 PAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKI 300

Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
            GKLQDGTVF+KKGH E+E  FEFKTDEE VI+GLDRAV+ MKK EVAL+TI PEYA+GS
Sbjct: 301 TGKLQDGTVFLKKGHDEQEP-FEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGS 359

Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYA 416
            ES+Q+ A+VPPNSTV YEVELVSF K+KESWD+N  EKIEAAG KKE+GN LFK+GKYA
Sbjct: 360 TESKQD-AIVPPNSTVIYEVELVSFVKDKESWDLNNSEKIEAAGTKKEEGNALFKSGKYA 418

Query: 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           RASKRYEKA K+IEYDTSF ++EKKQ+K LK+ CNLNNAACKLKLKDYKQAEKLCTKV
Sbjct: 419 RASKRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAACKLKLKDYKQAEKLCTKV 476

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score =  201 bits (512), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 123/333 (36%), Positives = 193/333 (57%), Gaps = 25/333 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               A+ TMK GE   +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAIATMKVGEVCHITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TD--DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+  D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  E
Sbjct: 143 TEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L SF
Sbjct: 195 GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF +EE +
Sbjct: 253 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           +A+AL++A +LN A C LKL+ +  A + C K 
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 345

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score =  201 bits (511), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/333 (37%), Positives = 194/333 (58%), Gaps = 25/333 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDRFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYG-----LAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TD--DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+  D  +I++I   G+G+ +PNEGA+V+V L G  +D  VF ++          F+  E
Sbjct: 143 TEEEDGGIIRRIRTRGEGYAKPNEGALVEVALEGYFKD-QVFDRRE-------LRFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL++A+  M+K E +++ + P YAFGSA   +E   +PPN+ + YE+ L SF
Sbjct: 195 GESMDLPCGLEKAIQRMEKGEHSIVYLKPRYAFGSA--GKEKFQIPPNAELKYEIHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M++EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF DE+ +
Sbjct: 253 EKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAE 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           +A+AL++A +LN A C LKL+ +  A + C K 
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAIENCNKA 345

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score =  193 bits (490), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/333 (36%), Positives = 188/333 (56%), Gaps = 25/333 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G     A+G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYG-----AAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TD--DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+  D  +I++I   G+G+ RPN+GA+V+V L G  +D           +++   F+  E
Sbjct: 143 TEEEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYHKDRLF--------DQRELCFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL+ A+  M+K E +++ + P YAFGS    +E   +PP++ + YEV L SF
Sbjct: 195 GESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSV--GKERFQIPPHAELRYEVRLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M++ EK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF  EE +
Sbjct: 253 EKAKESWEMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           +  AL++A +LN A C LKL+ +  A + C K 
Sbjct: 313 KVHALRLASHLNLAMCHLKLQAFSAAIESCNKA 345

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score =  192 bits (488), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 120/333 (36%), Positives = 187/333 (56%), Gaps = 25/333 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E     D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETAMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TDDKK--VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+D+   +I++I   G+G+ RPN+GA+V+V L G   D           +++   F+  E
Sbjct: 143 TEDEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYYNDRLF--------DQRELCFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL+ A+  M+K E +++ + P YAFGS    +E   +PP++ + YEV L SF
Sbjct: 195 GESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSV--GKERFQIPPHAELRYEVHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK K SW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF  EE +
Sbjct: 253 EKAKASWEMNSEEKLEQSNIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           +  AL++A +LN A C LKL+ +  A + C K 
Sbjct: 313 KVHALRLASHLNLAMCHLKLQAFSAAIESCNKA 345

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P27124|FKBP4_RABIT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Oryctolagus cuniculus GN=FKBP4 PE=1 SV=3

 Score =  185 bits (470), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 124/333 (37%), Positives = 193/333 (57%), Gaps = 25/333 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGELCRITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TDDKK--VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           TDD+   +I++I   G+G+ RPN+GA+V+V L G  +D           +++   F+  E
Sbjct: 143 TDDEDGGIIRRIRTRGEGYARPNDGAIVEVALEGYYKDRLF--------DQRELRFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL++A+  M+K E ++L + P YAFG+A   +E   +PP + + YEV L SF
Sbjct: 195 GESLDLPCGLEKAIQRMEKGEHSILYLKPSYAFGNA--GKEKFQIPPYAELKYEVHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M++EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF  EE +
Sbjct: 253 EKAKESWEMSSEEKLEQSAIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSSEEVQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           +A+AL++A +LN A C LKL+ +  A + C K 
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAVESCNKA 345

Immunophilin protein with PPIase and co-chaperone activities. Component of unligated steroid receptors heterocomplexes thought interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments. The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7DMA9|PAS1_ARATH Peptidyl-prolyl cis-trans isomerase PASTICCINO1 OS=Arabidopsis thaliana GN=PAS1 PE=1 SV=2

 Score =  185 bits (469), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 141/466 (30%), Positives = 225/466 (48%), Gaps = 32/466 (6%)

Query: 32  KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRD----RSTPFKFTL 87
           K+I    L K +V+ G G  +P +GD+V  H T   LDG   +S+R     R  P +  L
Sbjct: 27  KKIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTVRTLDGVVVESTRSESGGRGVPIRDVL 86

Query: 88  GQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNAT----LQFDVELLSW 143
           G   +I G   GI TM KGE A+F + PE+ Y E   P + P N      L F++ELL +
Sbjct: 87  GNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAEIDCPVSAPENFPKDDELHFEIELLDF 146

Query: 144 TSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV--GKADGVEFTVKD 201
           +  K    D G+IKKIL EGE WE+P++  EV     A+  DG V+     +   FT   
Sbjct: 147 SKAKIASDDLGVIKKILNEGEGWESPREPYEVKARISAKSGDGHVIFSHTEEPYFFTFGK 206

Query: 202 GHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                 L   + TM + EK ++ V+ QY       + S           +   +ELV + 
Sbjct: 207 SEVPKGLEIGIGTMARKEKAVIYVRKQY------LTESPLLHIDQDLEEVHFEVELVHFI 260

Query: 262 TVSEITDDKKVIKKILKEGDG---FERPNEGAVVKVKLIGKL--QDGTVFVKKGHSEEEQ 316
            V ++  D ++IK+ +++G G    + P + + + V   G L  ++ TVF        +Q
Sbjct: 261 QVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYKGMLLNEEKTVFYDSKIDNNDQ 320

Query: 317 LFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPN----STV 372
             EF + E  V +G +     M   E+AL+T  P+YA+            PP     + V
Sbjct: 321 PLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYDKFPR-------PPGVSEGAHV 373

Query: 373 HYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432
            +E+EL+ FE  ++   +N +  ++ A K +  GN LFK GK+  A  +YEK ++   + 
Sbjct: 374 QWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELAKAKYEKVLREFNHV 433

Query: 433 TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478
               ++E K     +   +LN AAC LK+ +++++ + C KV + K
Sbjct: 434 NPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 479

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Essential protein regulating cell division, adhesion and elongation throughout the plant development and embryogenesis. Required for the spatial organization of apical meristems. Involved in the hormonal control of cell division and differentiation mediated by cytokinins and auxin. Regulates the function of NAC089 transcription factor by controlling its targeting to the nucleus upon plant cell division. Interacts with enzymes of the fatty acid elongase complex and favors the generation of very-long-chain fatty acids (VLCFAs) required for polar auxin transport and tissue patterning during plant development.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/278 (40%), Positives = 160/278 (57%), Gaps = 28/278 (10%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
           ++G+ K + + G G +TP  GD+V VHY G L +G +FDSS DR+ PF F++G+G VIK 
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI 155
           WDIG+ TMKKGE       PE AYG +GS P IP NATL F+VELL++   +D+ +DGGI
Sbjct: 90  WDIGVSTMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLNFKG-EDLLEDGGI 148

Query: 156 IKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDG--HFCPT-LAKAV 212
           I++  + GE + NP +   V ++ E R   G  V     V FTV +G  H  P  + KA+
Sbjct: 149 IRRTKRRGEGYSNPNEGARVQIHLEGRC--GGRVFDCRDVAFTVGEGEDHDIPIGIDKAL 206

Query: 213 KTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKV 272
           + M++ E+ +L + P+YGFGE GK   G    + PNA L   + L S++   E       
Sbjct: 207 EKMQREEQCILHLGPRYGFGEAGKPKFG----IEPNAELIYEVTLKSFEKAKESW----- 257

Query: 273 IKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKG 310
                 E D  E+  + A+VK       ++GTV+ K G
Sbjct: 258 ------EMDTKEKLEQAAIVK-------EEGTVYFKGG 282

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
359497288	571	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.963	0.830	0.864	0.0
224065421	575	predicted protein [Populus trichocarpa]	0.961	0.822	0.849	0.0
255589766	574	peptidylprolyl isomerase, putative [Rici	0.963	0.825	0.852	0.0
255587695	583	peptidylprolyl isomerase, putative [Rici	0.963	0.813	0.852	0.0
355329948	573	FK506-binding protein [Nicotiana tabacum	0.961	0.825	0.855	0.0
356527318	544	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.947	0.856	0.835	0.0
356567794	544	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.947	0.856	0.829	0.0
449463204	553	PREDICTED: peptidyl-prolyl cis-trans iso	0.963	0.857	0.831	0.0
297831424	551	peptidylprolyl isomerase [Arabidopsis ly	0.959	0.856	0.831	0.0
9294180	555	peptidylprolyl isomerase; FK506-binding	0.961	0.852	0.825	0.0

>gi|359497288|ref|XP_002263566.2| PREDICTED: 70 kDa peptidyl-prolyl isomerase [Vitis vinifera] gi|296085741|emb|CBI29552.3| unnamed protein product [Vitis vinifera]

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/474 (86%), Positives = 441/474 (93%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           MDEDFDIPAA EM+ DMDLPD++P++KVGEEKEIG QGLKKKLVKEGEGWDTPENGDEVE
Sbjct: 1   MDEDFDIPAAEEMNDDMDLPDESPILKVGEEKEIGKQGLKKKLVKEGEGWDTPENGDEVE 60

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 61  VHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELAYG 120

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGS  TIPPNATLQFDVELLSWTSVKDICKDGGI KKI+ EG+KWENPKDLDEV V YE
Sbjct: 121 ESGSSTTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVTEGDKWENPKDLDEVFVKYE 180

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           ARLEDG +V K+DGVEFTVK+ +FCP L+KAVKTMKKGEKV+L VKPQYGFGEKGK ASG
Sbjct: 181 ARLEDGTLVAKSDGVEFTVKEDYFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPASG 240

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
            EGAVPPNATL+I LELVSWKTV+E+TDDKKVIKKILKEG+G+ERPNEGAVVK+KLIGKL
Sbjct: 241 EEGAVPPNATLEITLELVSWKTVTEVTDDKKVIKKILKEGEGYERPNEGAVVKLKLIGKL 300

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDGTVF+KKGH E E LFEFKTD+EQVIDGLDRAV+TMKK EVALLTI  +YAFGS+ES 
Sbjct: 301 QDGTVFLKKGHGEGEDLFEFKTDDEQVIDGLDRAVMTMKKGEVALLTIHSDYAFGSSESS 360

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV+YEVEL SF K+KESWDMNTEEKIEAAGKKKE+GN LFKAGKYARASK
Sbjct: 361 QELAVVPPNSTVYYEVELESFVKDKESWDMNTEEKIEAAGKKKEEGNVLFKAGKYARASK 420

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           RYEKA KYIEYD+SFG+EEKKQAK LKV CNLNNAACKLKLKDYK+AEKLCTKV
Sbjct: 421 RYEKAAKYIEYDSSFGEEEKKQAKTLKVTCNLNNAACKLKLKDYKEAEKLCTKV 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065421|ref|XP_002301809.1| predicted protein [Populus trichocarpa] gi|222843535|gb|EEE81082.1| predicted protein [Populus trichocarpa]

 Score =  835 bits (2156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/478 (84%), Positives = 443/478 (92%), Gaps = 5/478 (1%)

Query: 1   MDEDFDIPAANEMDAD----MDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENG 56
           M+EDF++P  +EM  +    +DLPD+ PM+KVGEEKEIGNQGLKKKL+KEGEGWDTP+NG
Sbjct: 1   MEEDFELPTGDEMMMNNGDQLDLPDEGPMLKVGEEKEIGNQGLKKKLLKEGEGWDTPDNG 60

Query: 57  DEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPE 116
           DEVEVHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD+GIKTMKKGENA+FTIP +
Sbjct: 61  DEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKGENALFTIPAD 120

Query: 117 LAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVL 176
           LAYG SGSPPTIPPNATLQFDVELLSW+S+KDICKDGGI KKIL EGEKWENPKDLDEVL
Sbjct: 121 LAYGSSGSPPTIPPNATLQFDVELLSWSSIKDICKDGGIFKKILVEGEKWENPKDLDEVL 180

Query: 177 VNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236
           V YEA+LEDG V+ ++DGVEFTVKDGHFCP LA+AVKTMK GEKVLL VKPQYGFGEKGK
Sbjct: 181 VRYEAQLEDGSVIARSDGVEFTVKDGHFCPALARAVKTMKMGEKVLLTVKPQYGFGEKGK 240

Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
            ASG+E AVPPNA +QI LELV+WKTV+E+TDDKKVIKKILKEGDG++RPNEGAVVKVKL
Sbjct: 241 PASGDESAVPPNANIQITLELVAWKTVTEVTDDKKVIKKILKEGDGYDRPNEGAVVKVKL 300

Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
           IGKLQDGTVF KKG  + E LFEFKTDEEQVIDGLDRAV TMKK E+ALLTIAPEYAFGS
Sbjct: 301 IGKLQDGTVFFKKGQDDSE-LFEFKTDEEQVIDGLDRAVSTMKKGELALLTIAPEYAFGS 359

Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYA 416
           +ESQQELAVVPPNSTV YE+ELVSF+KEKESWDMNT+EKIEAAGKKKE+GN LFKAGKYA
Sbjct: 360 SESQQELAVVPPNSTVCYEIELVSFDKEKESWDMNTDEKIEAAGKKKEEGNVLFKAGKYA 419

Query: 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           +ASKRYEKAVKYIEYD+SF +EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV
Sbjct: 420 KASKRYEKAVKYIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 477

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255589766|ref|XP_002535081.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223524081|gb|EEF27302.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  834 bits (2155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/476 (85%), Positives = 445/476 (93%), Gaps = 2/476 (0%)

Query: 1   MDEDFDIPAANEM--DADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           M+EDFDIPA +EM  + D+DL D +P++KVGEEKEIG QGLKKKLVKEGEGWDTP+NGDE
Sbjct: 1   MEEDFDIPAGDEMMMNDDVDLGDQSPILKVGEEKEIGKQGLKKKLVKEGEGWDTPDNGDE 60

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELA
Sbjct: 61  VEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELA 120

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YG SGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKIL EGEKWENPKDLDEVLVN
Sbjct: 121 YGASGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILVEGEKWENPKDLDEVLVN 180

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VV K+DGVEF VK+GHFCP LAKAVKTMKK EKVLL VKPQYGFGEKGK A
Sbjct: 181 FEAQLEDGTVVAKSDGVEFAVKEGHFCPALAKAVKTMKKKEKVLLTVKPQYGFGEKGKPA 240

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATLQI LELVSWKTVSE+TDDKKV+KKILKEG+G+ERPN+G++VK+KLIG
Sbjct: 241 SNGEGAVPPNATLQITLELVSWKTVSEVTDDKKVMKKILKEGEGYERPNDGSLVKLKLIG 300

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH  EE+LFEF TDEEQVI+GLDRAV+ MKK EVAL+TIAPEYAFG++E
Sbjct: 301 KLQDGTVFLKKGHDNEEELFEFTTDEEQVIEGLDRAVLAMKKGEVALVTIAPEYAFGASE 360

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           S+QELAV+PPNSTV+YEVELVSF KEKESWDMNT+EKIEAAGKKKE+GN LFKAGKYARA
Sbjct: 361 SKQELAVIPPNSTVYYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNILFKAGKYARA 420

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           SKRYEKAVK+IEYD+SF +EEKKQAKALKVACNLNNAACKL+LK+YK+AEKLCTKV
Sbjct: 421 SKRYEKAVKHIEYDSSFSEEEKKQAKALKVACNLNNAACKLRLKEYKEAEKLCTKV 476

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587695|ref|XP_002534361.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223525436|gb|EEF28026.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/476 (85%), Positives = 445/476 (93%), Gaps = 2/476 (0%)

Query: 1   MDEDFDIPAANEM--DADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           M+EDFDIPA +EM  + D+DL D +P++KVGEEKEIG QGLKKKLVKEGEGWDTP+NGDE
Sbjct: 1   MEEDFDIPAGDEMMMNDDVDLGDQSPILKVGEEKEIGKQGLKKKLVKEGEGWDTPDNGDE 60

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELA
Sbjct: 61  VEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELA 120

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YG SGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKIL EGEKWENPKDLDEVLVN
Sbjct: 121 YGASGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILVEGEKWENPKDLDEVLVN 180

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VV K+DGVEF VK+GHFCP LAKAVKTMKK EKVLL VKPQYGFGEKGK A
Sbjct: 181 FEAQLEDGTVVAKSDGVEFAVKEGHFCPALAKAVKTMKKKEKVLLTVKPQYGFGEKGKPA 240

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATLQI LELVSWKTVSE+TDDKKV+KKILKEG+G+ERPN+G++VK+KLIG
Sbjct: 241 SNGEGAVPPNATLQITLELVSWKTVSEVTDDKKVMKKILKEGEGYERPNDGSLVKLKLIG 300

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH  EE+LFEF TDEEQVI+GLDRAV+ MKK EVAL+TIAPEYAFG++E
Sbjct: 301 KLQDGTVFLKKGHDNEEELFEFTTDEEQVIEGLDRAVLAMKKGEVALVTIAPEYAFGASE 360

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           S+QELAV+PPNSTV+YEVELVSF KEKESWDMNT+EKIEAAGKKKE+GN LFKAGKYARA
Sbjct: 361 SKQELAVIPPNSTVYYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNILFKAGKYARA 420

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           SKRYEKAVK+IEYD+SF +EEKKQAKALKVACNLNNAACKL+LK+YK+AEKLCTKV
Sbjct: 421 SKRYEKAVKHIEYDSSFSEEEKKQAKALKVACNLNNAACKLRLKEYKEAEKLCTKV 476

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355329948|dbj|BAL14273.1| FK506-binding protein [Nicotiana tabacum]

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/476 (85%), Positives = 438/476 (92%), Gaps = 3/476 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           M+EDFDIP A  MD DMDLPDD P+MKVGEEKEIGNQGLKKKLVKEGEGW+TPE GDEVE
Sbjct: 1   MEEDFDIPPAEGMDEDMDLPDD-PIMKVGEEKEIGNQGLKKKLVKEGEGWETPEAGDEVE 59

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR  PFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 60  VHYTGTLLDGTKFDSSRDRGDPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELAYG 119

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPPNATLQFDVELLSW SVKDICKDGGI KKIL EGEKWENPKD DEVLV YE
Sbjct: 120 ESGSPPTIPPNATLQFDVELLSWVSVKDICKDGGIFKKILAEGEKWENPKDFDEVLVKYE 179

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           A LE+G VVGK+DGVEFTV+DG+FCP LAKAVKTMKKGEKV L VKPQYGFGEKGK AS 
Sbjct: 180 ALLENGTVVGKSDGVEFTVQDGYFCPALAKAVKTMKKGEKVQLTVKPQYGFGEKGKPASS 239

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           + GAVP NATLQI LELVSWK VS +TDDKKV+KKILKEG+G+E+PNEGAVVK+KLIGKL
Sbjct: 240 DGGAVPSNATLQINLELVSWKIVSSVTDDKKVVKKILKEGEGYEKPNEGAVVKLKLIGKL 299

Query: 301 QDGTVFVKKGHS--EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           QDGTVF+KKGH    E++LFEFKTDEEQVIDGLDRAV+TMKK EVALLTIAPEYAFGS+E
Sbjct: 300 QDGTVFIKKGHDGENEDELFEFKTDEEQVIDGLDRAVMTMKKGEVALLTIAPEYAFGSSE 359

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           S+Q+LAV+PPNSTVHYEVELVSF K+KESWDMNT EKIEAAGKKKE+GN LFKAGKY RA
Sbjct: 360 SKQDLAVIPPNSTVHYEVELVSFVKDKESWDMNTPEKIEAAGKKKEEGNALFKAGKYTRA 419

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           SKRYEKA K+IEYDTSF +EEKKQ+KALK++CNLNNAACKLKLKDYKQAEKLCTKV
Sbjct: 420 SKRYEKAAKFIEYDTSFSEEEKKQSKALKISCNLNNAACKLKLKDYKQAEKLCTKV 475

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527318|ref|XP_003532258.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  813 bits (2101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/474 (83%), Positives = 435/474 (91%), Gaps = 8/474 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           M+EDFDIP   EMD   D        KVGEE+EIG++GLKKKL+KEG+GW+TPE GDEV+
Sbjct: 1   MEEDFDIPGGEEMDLGED--------KVGEEREIGSRGLKKKLLKEGQGWETPEVGDEVQ 52

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR +PF FTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 53  VHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYG 112

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKI+ EG+KWENPKD DEVLV YE
Sbjct: 113 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVTEGDKWENPKDPDEVLVKYE 172

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
             LE+G +V K+DGVEFTV++GH+CP L+KAVKTMKKGEKVLL VKPQYGFGEKGK   G
Sbjct: 173 VHLENGKLVAKSDGVEFTVREGHYCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKPEQG 232

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           +EGAVPPNATLQI LELVSWKTVSE+TDDKKVIKKILKEG+G+ERPNEGA+VKVKLIGKL
Sbjct: 233 DEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKL 292

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDG  F+KKGH EEE+LFEFKTDEEQV+DGLDRAV+TMKK EVALLTIAPEYAFGS+ESQ
Sbjct: 293 QDGAAFLKKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPEYAFGSSESQ 352

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV++EVELVSFEKEKESWD+NTEEK+EAAGKKKE+GN LFKAGK+ARASK
Sbjct: 353 QELAVVPPNSTVYFEVELVSFEKEKESWDLNTEEKLEAAGKKKEEGNVLFKAGKHARASK 412

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           RYEKAVKYIEYD+SFG+EEKKQAK LKVACNLNNAACKLKLKDYK+AEKLCTKV
Sbjct: 413 RYEKAVKYIEYDSSFGEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTKV 466

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567794|ref|XP_003552100.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  808 bits (2086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/474 (82%), Positives = 433/474 (91%), Gaps = 8/474 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           M+EDFDIP   EMD   D        +VGEE+EIG+ GLKKKL+KEG+GW+TPE GDEV+
Sbjct: 1   MEEDFDIPGGEEMDLGED--------EVGEEREIGSGGLKKKLLKEGQGWETPEVGDEVQ 52

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR +PF FTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 53  VHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYG 112

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKI+ EGEKWENPKD DEVLV YE
Sbjct: 113 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIITEGEKWENPKDPDEVLVKYE 172

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
             LE+G ++ K+DG EFTV++GH+CP L+KAVKTMKKGEKVLL VKPQYGFGEKGK   G
Sbjct: 173 VHLENGKLLAKSDGEEFTVREGHYCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKPEQG 232

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           +EGAVPPNATLQI LELVSWKTVSE+TDDKKVIKKILKEG+G+ERPNEGA+VKVKLIGKL
Sbjct: 233 DEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKL 292

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDGT F+KKGH EEE+LFEFKTDEEQV+DGLDRAV+TMKK EVALLTIAP+YAFG++ESQ
Sbjct: 293 QDGTAFLKKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPDYAFGTSESQ 352

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV++EVELVSFEKEKESWD+NTEEK+EAAGKKKE+GN LFKA KYARASK
Sbjct: 353 QELAVVPPNSTVYFEVELVSFEKEKESWDLNTEEKLEAAGKKKEEGNVLFKASKYARASK 412

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           RYEKAVKYIEYD+SFG+EEKKQAK LKVACNLNNAACKLKLKDYK+AEKLCTKV
Sbjct: 413 RYEKAVKYIEYDSSFGEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTKV 466

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463204|ref|XP_004149324.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Cucumis sativus] gi|449515125|ref|XP_004164600.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Cucumis sativus]

 Score =  798 bits (2061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/474 (83%), Positives = 438/474 (92%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           MDEDFDIPAA +M  D+DLPD    +KVGEEKEIGNQGLKKKL+KEGEGW TPE+GDEVE
Sbjct: 1   MDEDFDIPAAPDMPDDLDLPDQTVPLKVGEEKEIGNQGLKKKLLKEGEGWVTPESGDEVE 60

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD+GIKTMKK E A+FTIPP+LAYG
Sbjct: 61  VHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKNEKALFTIPPDLAYG 120

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPP+ATLQFDVELLSWTSVKDICKDGGI KKIL EG+KWENPKDLDEVLVN+E
Sbjct: 121 ESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWENPKDLDEVLVNFE 180

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           A+LEDG ++ KADGVEFTV DG+FCP LAKAVKTMK GEK LL VKPQYGFGEKGKSA G
Sbjct: 181 AKLEDGTLIAKADGVEFTVADGYFCPALAKAVKTMKLGEKALLTVKPQYGFGEKGKSARG 240

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           NEGAVPPNA+L I LELVSWKTVSE+T DKKVIKKILKEG+G+E+PN+GA+VKVKLIGKL
Sbjct: 241 NEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLIGKL 300

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
            DG +F++KGH + E+ +EFKTDEEQVIDGLD+AV+TMKK E+ALLTIAPEYAFGS+ESQ
Sbjct: 301 GDGKIFLRKGHEDGEEPYEFKTDEEQVIDGLDKAVVTMKKGEIALLTIAPEYAFGSSESQ 360

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           Q+LAVVPPNSTV+YEVELV+F+KEKESWDMN +EKIEAAGKKKE+GN LFK+GK+ARASK
Sbjct: 361 QDLAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKSGKFARASK 420

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           RYEKAVK+IEYD+SF +EEKKQAKALKVACNLNNAACKLKLK Y +AEKLCTKV
Sbjct: 421 RYEKAVKFIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKLYNEAEKLCTKV 474

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831424|ref|XP_002883594.1| peptidylprolyl isomerase [Arabidopsis lyrata subsp. lyrata] gi|297329434|gb|EFH59853.1| peptidylprolyl isomerase [Arabidopsis lyrata subsp. lyrata]

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/474 (83%), Positives = 430/474 (90%), Gaps = 2/474 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           MD DF++P   + D +MD  D A  +KVGEEKEI  QGLKKKLVKEGEG++TPENGDEVE
Sbjct: 1   MDNDFEMPPVGD-DDEMDFGDAASFLKVGEEKEI-QQGLKKKLVKEGEGYETPENGDEVE 58

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELAYG
Sbjct: 59  VHYTGTLLDGTKFDSSRDRGTPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPSELAYG 118

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           E+GSPPTIP NATLQFDVELL+W SVKDICKDGG+ KKIL  GEKWENPKDLDEVLV +E
Sbjct: 119 ETGSPPTIPANATLQFDVELLTWVSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVKFE 178

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           A+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK AS 
Sbjct: 179 AKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASA 238

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
            +GAVPPNATL+I LELVSWKTVSE+TDD KV+KKILKEG+G+ERPNEGA VKVKLIGKL
Sbjct: 239 GDGAVPPNATLEINLELVSWKTVSEVTDDNKVMKKILKEGEGYERPNEGAAVKVKLIGKL 298

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS ESQ
Sbjct: 299 QDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQ 358

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV YEV+L++F+KE+ESWDM+TEEKIEAA KKKE+GN+ FKAGKYA ASK
Sbjct: 359 QELAVVPPNSTVTYEVDLLTFDKERESWDMSTEEKIEAASKKKEEGNSKFKAGKYALASK 418

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           RYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKV
Sbjct: 419 RYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKV 472

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294180|dbj|BAB02082.1| peptidylprolyl isomerase; FK506-binding protein [Arabidopsis thaliana]

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/476 (82%), Positives = 429/476 (90%), Gaps = 3/476 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDD--APMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           MD +F++P    M+ D D+     A  +KVGEEKEI  QGLKKKL+KEGEG++TPENGDE
Sbjct: 1   MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDE 59

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGT+FDSSRDR+TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELA
Sbjct: 60  VEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELA 119

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YGESGSPPTIP NATLQFDVELL W SVKDICKDGG+ KKIL  GEKWENPKDLDEVLV 
Sbjct: 120 YGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVK 179

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK A
Sbjct: 180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPA 239

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATL+I LELVSWKTVSE+TDD KV+KK+LKEGDG+ERPNEGAVVKVKLIG
Sbjct: 240 SAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS E
Sbjct: 300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           SQQELAVVPPNSTV YEV+L++F+KE+ESWDMNTEEKIEAA KKKE+GN+ FK GKY+ A
Sbjct: 360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           SKRYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKV
Sbjct: 420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKV 475

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.961	0.841	0.739	2.2e-185
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.910	0.775	0.737	3e-179
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.908	0.770	0.732	3.6e-176
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.908	0.764	0.708	1.7e-171
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.908	0.655	0.661	1e-162
UNIPROTKB|Q657L6	422	P0468H06.14-3 "Peptidyl-prolyl	0.650	0.758	0.457	3.3e-70
UNIPROTKB|A8J0I6	569	FKB62 "Peptidyl-prolyl cis-tra	0.560	0.485	0.434	4.7e-68
UNIPROTKB|F1NIM4	442	FKBP4 "Uncharacterized protein	0.595	0.662	0.369	1.1e-46
UNIPROTKB|F1NP08	464	FKBP4 "Uncharacterized protein	0.595	0.631	0.369	1.1e-46
UNIPROTKB|P27124	458	FKBP4 "Peptidyl-prolyl cis-tra	0.591	0.635	0.360	3.1e-44

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 1798 (638.0 bits), Expect = 2.2e-185, P = 2.2e-185
 Identities = 352/476 (73%), Positives = 383/476 (80%)

Query:     1 MDEDFDIPAAN--EXXXXXXXXXXXXXXKVGEEKEIGNQXXXXXXXXXXXXWDTPENGDE 58
             MD +F++P                    KVGEEKEI  Q            ++TPENGDE
Sbjct:     1 MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDE 59

Query:    59 VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
             VEVHYTGTLLDGT+FDSSRDR+TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELA
Sbjct:    60 VEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELA 119

Query:   119 YGESGSPPTIPPNATLQFDVELLSWTSVXXXXXXXXXXXXXXXXXXXWENPKDLDEVLVN 178
             YGESGSPPTIP NATLQFDVELL W SV                   WENPKDLDEVLV 
Sbjct:   120 YGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVK 179

Query:   179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
             +EA+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK A
Sbjct:   180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPA 239

Query:   239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
             S  EGAVPPNATL+I LELVSWKTVSE+TDD KV+KK+LKEGDG+ERPNEGAVVKVKLIG
Sbjct:   240 SAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299

Query:   299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
             KLQDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS E
Sbjct:   300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query:   359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARA 418
             SQQELAVVPPNSTV YEV+L++F+KE+ESWDMNT            +GN+ FK GKY+ A
Sbjct:   360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query:   419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
             SKRYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKV
Sbjct:   420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKV 475

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 1740 (617.6 bits), Expect = 3.0e-179, P = 3.0e-179
 Identities = 332/450 (73%), Positives = 376/450 (83%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             K+GEE EIG              WDTPENGDEVEVHYTGTLLDGT+FDSSRDR TPFKFT
Sbjct:    36 KIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFT 95

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG+VIKGWD+GIKTMKKGENA+FTIPPELAYGE+GSPPTIPPNATLQFDVEL++W SV
Sbjct:    96 LGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGSPPTIPPNATLQFDVELIAWRSV 155

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WE PKDLDEV V YEARLEDG +VGK+DGVEFTVK+GHFCP
Sbjct:   156 KDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTIVGKSDGVEFTVKEGHFCP 215

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSAS-GNEGAVPPNATLQIALELVSWKTVSE 265
              L+KAVKTMK+GEKVLL VKPQYGFGE G+ AS G + A+PPNATLQI LELVSWKTV E
Sbjct:   216 ALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAAIPPNATLQIDLELVSWKTVVE 275

Query:   266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT-VFVKKGHSEEEQLFEFKTDE 324
             +TDD+KVIKKILKEG+G+ERPNEGA+VK+KLIGKLQDGT VFVKKGH E+E+ FEFK DE
Sbjct:   276 VTDDRKVIKKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEEDEEPFEFKIDE 335

Query:   325 EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
             EQVI+GL++AV+ MKK EVAL+TI+PEYAFGS+ES+QELAV+PPNSTV+YEVELVSF KE
Sbjct:   336 EQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSFIKE 395

Query:   385 KESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444
             KESWDMNT            +GN LFKAGKYARASKRYE+ VKYIEYD++F +EEKK++K
Sbjct:   396 KESWDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSK 455

Query:   445 ALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
              LK+ACNLN+AACKLKLKDYK+A KL TKV
Sbjct:   456 DLKIACNLNDAACKLKLKDYKEAAKLSTKV 485

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1711 (607.4 bits), Expect = 3.6e-176, P = 3.6e-176
 Identities = 328/448 (73%), Positives = 360/448 (80%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             KVGEEKEIG Q            W+TPE GDEVEVHYTGTLLDG +FDSSRDR TPFKF 
Sbjct:    35 KVGEEKEIGKQGLRKKLLKEGEGWETPEVGDEVEVHYTGTLLDGKKFDSSRDRGTPFKFK 94

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG VIKGWD+GIKTMKKGENAVFTIPP+LAYGESGSPPTIP +ATLQFDVELLSWTSV
Sbjct:    95 LGQGQVIKGWDLGIKTMKKGENAVFTIPPDLAYGESGSPPTIPASATLQFDVELLSWTSV 154

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WENPKDLDEV V YEARLEDG V+ K++G EFTVKDG FCP
Sbjct:   155 KDICQDGGIFKKILKEGEKWENPKDLDEVFVKYEARLEDGTVISKSEGAEFTVKDGFFCP 214

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
              LAKAVKTMKK EKVLL VKPQYGFGE G+ A+G EGAVPPNATL + LELVSWKTV+EI
Sbjct:   215 ALAKAVKTMKKAEKVLLTVKPQYGFGENGRPAAGEEGAVPPNATLLVNLELVSWKTVTEI 274

Query:   267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
              DDKK++KK+L EG G+ERPNEGAVVKVK+ GKLQDGT+F KKGH E E  FEFKTDEE+
Sbjct:   275 GDDKKILKKVLTEGTGYERPNEGAVVKVKITGKLQDGTIFTKKGHDEPEP-FEFKTDEEE 333

Query:   327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
             VIDG+DRAV+ MK  EVAL+TI PEYAFGS ES+Q+LAVVPPNSTV YEVELVSF K+KE
Sbjct:   334 VIDGIDRAVLNMKNGEVALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELVSFVKDKE 393

Query:   387 SWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKAL 446
             SWD+N             +GN LFK GKY RASKRYEKA K+IEYD+SF ++EKKQ+K L
Sbjct:   394 SWDLNNTEKIETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQL 453

Query:   447 KVACNLNNAACKLKLKDYKQAEKLCTKV 474
             KV CNLNNAACKLKLKDYKQAEKLCTKV
Sbjct:   454 KVTCNLNNAACKLKLKDYKQAEKLCTKV 481

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1667 (591.9 bits), Expect = 1.7e-171, P = 1.7e-171
 Identities = 318/449 (70%), Positives = 364/449 (81%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             KVGEEKEIG Q            WD PE+GDEV+VHYTGTLLDGT+FDSSRDR TPFKF+
Sbjct:    39 KVGEEKEIGKQGLRKRLLKEGEGWDRPESGDEVQVHYTGTLLDGTKFDSSRDRGTPFKFS 98

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG VIKGWD GIKTMKKGE AVFT+PPELAYGE+GSPP IPPNATL+FDVELLSW SV
Sbjct:    99 LGQGEVIKGWDEGIKTMKKGEQAVFTVPPELAYGEAGSPPAIPPNATLRFDVELLSWASV 158

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WENPKDLDEVLV YEARLEDG VV K+DGVEF VKDG+FCP
Sbjct:   159 KDICKDGGIFKKVLAEGHKWENPKDLDEVLVKYEARLEDGTVVSKSDGVEFAVKDGYFCP 218

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
              L+KAVKTMKKGEKVLL VKPQYGFGE+GK ASG E AVPPNATL + LEL+SWKTV+ I
Sbjct:   219 ALSKAVKTMKKGEKVLLTVKPQYGFGEQGKPASGAEAAVPPNATLYVDLELLSWKTVTLI 278

Query:   267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
              DDK+++KK+LKEG+G+ERPN+GAVV+V+ IGKL+DGTVF KKGH  +E  FEF+TDEEQ
Sbjct:   279 GDDKRILKKVLKEGEGYERPNDGAVVRVRFIGKLEDGTVFSKKGHDGDEP-FEFRTDEEQ 337

Query:   327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
             VI+GLDR V+TMKK EVAL+ + P++AFGS E++Q+LAVVP NSTV YEVELVSFEKEKE
Sbjct:   338 VIEGLDRTVVTMKKGEVALVRLPPQHAFGSTETKQDLAVVPANSTVWYEVELVSFEKEKE 397

Query:   387 SWDM-NTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
             SWD+ +             +GN  FK GKYA+ASKRYEKA KYIEYD+SF D+EKKQ+KA
Sbjct:   398 SWDLKDNAEKIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKA 457

Query:   446 LKVACNLNNAACKLKLKDYKQAEKLCTKV 474
             LKV+C LNNAACKLKLK+Y++AEKLCTKV
Sbjct:   458 LKVSCKLNNAACKLKLKEYREAEKLCTKV 486

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1584 (562.7 bits), Expect = 1.0e-162, P = 1.0e-162
 Identities = 297/449 (66%), Positives = 356/449 (79%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             +VGEEKEIG +            W+ P+ GDEV+VHYTGTLLDGT+FDSSRDR  PFKFT
Sbjct:    84 EVGEEKEIGKEGLRKKLVKEGEGWERPDAGDEVQVHYTGTLLDGTKFDSSRDRDAPFKFT 143

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG VIKGWD+GIKTMKKGENA+FTIPPELAYGE GSPP IPPNATLQFDVEL+SW SV
Sbjct:   144 LGQGQVIKGWDLGIKTMKKGENAIFTIPPELAYGEDGSPPVIPPNATLQFDVELISWESV 203

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WENP+D DEV V YE RLEDG VV ++DGVEFTVKDGHFCP
Sbjct:   204 KDICKDGGILKKVLAEGTKWENPRDRDEVFVKYEVRLEDGTVVAESDGVEFTVKDGHFCP 263

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
              ++KAVKTMKK EK LL VKPQYGFGE+G+ A+ +E A+PPNATL I LELVSWK V+EI
Sbjct:   264 AISKAVKTMKKNEKALLTVKPQYGFGEQGRPAARDEAAIPPNATLHINLELVSWKAVTEI 323

Query:   267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
              +DKK++KKIL EG+G+ERP++  +V+VKLIGKL+DGT+FV +GH  +E  FEFKTDE+Q
Sbjct:   324 GNDKKILKKILHEGEGYERPSDCTLVRVKLIGKLEDGTIFVTRGHDGDEP-FEFKTDEDQ 382

Query:   327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
             V++GLD+AV++MKK EVAL+TI PEYAFGS E++Q+L+VVPPNSTV+YEVELVSF+KEKE
Sbjct:   383 VVEGLDKAVLSMKKGEVALVTIPPEYAFGSDETRQDLSVVPPNSTVYYEVELVSFDKEKE 442

Query:   387 SWDMN-TXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
             SWDM               +GN  FK  KYARASKRY KA+ +I+YD+SF +EEK+ +K 
Sbjct:   443 SWDMKENTEKIEAAAKKKDEGNAWFKMEKYARASKRYGKALNFIQYDSSFSEEEKQLSKP 502

Query:   446 LKVACNLNNAACKLKLKDYKQAEKLCTKV 474
             LKV+C LNNAACKLKLKDYK+A++LCT+V
Sbjct:   503 LKVSCKLNNAACKLKLKDYKEAKELCTEV 531

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q657L6 P0468H06.14-3 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 151/330 (45%), Positives = 216/330 (65%)

Query:    58 EVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117
             EV+VH+TG L+DGTQF SSR+   P +F LGQ +V+ G+++ + +M+ GE A+FTIP  L
Sbjct:    75 EVQVHFTGELVDGTQFVSSRENDIPERFILGQEDVMHGFNLAVSSMQPGEKAIFTIPSAL 134

Query:   118 AYGESGSP---PT-IPPNATLQFDVELLS-WTSVXXXXXXXXXXXXXXXXXXXWENPKDL 172
                ++GSP   P+ IPPN TL+F++EL++ +T +                    +     
Sbjct:   135 TMTKAGSPASIPSNIPPNQTLRFEIELIAMFTIIDIFKDEGILKKIVKNAEPDRKQSHSS 194

Query:   173 DEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFG 232
             D V V Y+A L DG  V K++GVEF++ DG FCP  A AV TMK+GE+ +L VKP+Y FG
Sbjct:   195 DFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKEGEEAVLIVKPKYAFG 254

Query:   233 EKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEG-AV 291
             E+G+ + G E AVPP+ATL + L  V W  +  I +D+ + KK L+ G+      +  AV
Sbjct:   255 EQGRPSQGEEAAVPPDATLYVHLLFVCW--IRRIGEDQAIAKKTLRIGNSQRIHTQSQAV 312

Query:   292 VKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPE 351
             VKV+L+GKLQDGTVF ++G+ ++E  FEF  DE QVIDGLD +V+TM++ EVA  TI P+
Sbjct:   313 VKVRLLGKLQDGTVFDRRGYGDDEP-FEFVVDEGQVIDGLDESVMTMEEGEVAEFTIPPQ 371

Query:   352 YAFGSAESQQ-ELAVVPPNSTVHYEVELVS 380
             +AF +  S Q + A VP N+TV Y++EL+S
Sbjct:   372 HAFDAVGSDQHQFAFVPRNATVVYKIELLS 401

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|A8J0I6 FKB62 "Peptidyl-prolyl cis-trans isomerase, FKBP-type" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 539 (194.8 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
 Identities = 126/290 (43%), Positives = 166/290 (57%)

Query:   192 ADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATL 251
             A+ V FTV +G   P +  AVKTMK+GE+V L VKP+YGFG  G S  G    VPP A L
Sbjct:   171 AEAVTFTVSEGLLVPAVRVAVKTMKRGERVQLKVKPEYGFGAAGSSEYG----VPPGADL 226

Query:   252 QIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGK-LQDGTVFVKK 309
             +I L L+ W  V    ++  V+KK L E D  + RPNEGA V +++ GK L DG VF+K 
Sbjct:   227 EIELTLLGWNNVEYCNNENTVVKKTLVECDNEYRRPNEGASVTLRVTGKVLPDGPVFMKH 286

Query:   310 GHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIA-PEYAFGSAE---SQQELAV 365
             G   E     F T+EEQV +GL+ AV+ MKK E A++T+  P Y +G      S +   V
Sbjct:   287 GEGSE---LRFVTEEEQVPEGLELAVMKMKKGETAVVTVNDPAYGYGDKPRTVSVEGSEV 343

Query:   366 -VPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEK 424
              VP  S + +EV+LV F   KE+W+M+             +GN  FK+GK ARA   +++
Sbjct:   344 EVPAGSRLQFEVDLVDFTNAKETWEMSDIEKAHAAKQRKDKGNAFFKSGKLARAQSCWDR 403

Query:   425 AVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
             AV  + YD SF DE K   K +K +C LN AA  LK   +K A K CT V
Sbjct:   404 AVAAVSYDKSFPDEAKAIGKEVKRSCWLNLAALDLKRAHWKDAVKHCTSV 453

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|F1NIM4 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 116/314 (36%), Positives = 181/314 (57%)

Query:   167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
             E+P   D+V V+Y   L DG      + + D   F +  G        AV TMK GE   
Sbjct:    38 ESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKAWDIAVATMKVGEICQ 97

Query:   223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK--VIKKILKEG 280
             +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++TDD+   +I++I K+G
Sbjct:    98 ITCKPEYAYG-----LAGSPPKIPPNATLIFEIELFEFKG-EDLTDDEDGGIIRRIRKKG 151

Query:   281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEF-KTDEEQVIDGLDRAVITMK 339
             +G+ +PNEGA+V+++  G+ +D   F K+     E  FE  + D   +  GL++A+  M+
Sbjct:   152 EGYLKPNEGALVEIQFEGRYRD-RAFDKR-----ELRFEIGEGDNYDLPHGLEKAIQKME 205

Query:   340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXX 399
             K+E ++  + P Y FGS  + +E   +PP++ + YEV+L SFEK KESW+MNT       
Sbjct:   206 KSEESIFYLKPNYGFGS--TGKEKFQIPPDAELQYEVKLKSFEKAKESWEMNTEEKLEQS 263

Query:   400 XXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL 459
                  +G   FK GKY RA+ +Y+K V ++E+++   DEE  +AK+L++A +LN A C L
Sbjct:   264 CMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAHLNLAMCHL 323

Query:   460 KLKDYKQAEKLCTK 473
             KLK+Y QA + C K
Sbjct:   324 KLKEYSQALENCNK 337

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NP08 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 116/314 (36%), Positives = 181/314 (57%)

Query:   167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
             E+P   D+V V+Y   L DG      + + D   F +  G        AV TMK GE   
Sbjct:    38 ESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKAWDIAVATMKVGEICQ 97

Query:   223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK--VIKKILKEG 280
             +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++TDD+   +I++I K+G
Sbjct:    98 ITCKPEYAYG-----LAGSPPKIPPNATLIFEIELFEFKG-EDLTDDEDGGIIRRIRKKG 151

Query:   281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEF-KTDEEQVIDGLDRAVITMK 339
             +G+ +PNEGA+V+++  G+ +D   F K+     E  FE  + D   +  GL++A+  M+
Sbjct:   152 EGYLKPNEGALVEIQFEGRYRD-RAFDKR-----ELRFEIGEGDNYDLPHGLEKAIQKME 205

Query:   340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXX 399
             K+E ++  + P Y FGS  + +E   +PP++ + YEV+L SFEK KESW+MNT       
Sbjct:   206 KSEESIFYLKPNYGFGS--TGKEKFQIPPDAELQYEVKLKSFEKAKESWEMNTEEKLEQS 263

Query:   400 XXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL 459
                  +G   FK GKY RA+ +Y+K V ++E+++   DEE  +AK+L++A +LN A C L
Sbjct:   264 CMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAHLNLAMCHL 323

Query:   460 KLKDYKQAEKLCTK 473
             KLK+Y QA + C K
Sbjct:   324 KLKEYSQALENCNK 337

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

UNIPROTKB|P27124 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4" [Oryctolagus cuniculus (taxid:9986)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 114/316 (36%), Positives = 178/316 (56%)

Query:   167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
             E P   D V V+Y   L DG      + + D   F +  G        AV TMK GE   
Sbjct:    45 ETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCR 104

Query:   223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK--VIKKILKEG 280
             +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++TDD+   +I++I   G
Sbjct:   105 ITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDLTDDEDGGIIRRIRTRG 158

Query:   281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID---GLDRAVIT 337
             +G+ RPN+GA+V+V L G  +D  +F      ++ +L  F+  E + +D   GL++A+  
Sbjct:   159 EGYARPNDGAIVEVALEGYYKD-RLF------DQREL-RFEVGEGESLDLPCGLEKAIQR 210

Query:   338 MKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXX 397
             M+K E ++L + P YAFG+A   +E   +PP + + YEV L SFEK KESW+M++     
Sbjct:   211 MEKGEHSILYLKPSYAFGNAG--KEKFQIPPYAELKYEVHLKSFEKAKESWEMSSEEKLE 268

Query:   398 XXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC 457
                    +G   FK GKY +A  +Y+K V ++EY++SF  EE ++A+AL++A +LN A C
Sbjct:   269 QSAIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSSEEVQKAQALRLASHLNLAMC 328

Query:   458 KLKLKDYKQAEKLCTK 473
              LKL+ +  A + C K
Sbjct:   329 HLKLQAFSAAVESCNK 344

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=ISS

GO:0010977 "negative regulation of neuron projection development" evidence=IDA

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=IDA

GO:0044295 "axonal growth cone" evidence=ISS

GO:0048156 "tau protein binding" evidence=IPI

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43207	FKB70_WHEAT	5, ., 2, ., 1, ., 8	0.7866	0.9593	0.8443	N/A	no
Q38931	FKB62_ARATH	5, ., 2, ., 1, ., 8	0.8298	0.9613	0.8584	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.983
4th Layer	5.2.1.8	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	492
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	1e-41
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	3e-40
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	2e-23
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	3e-23
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	9e-23
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	2e-16
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	1e-14
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	3e-13
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	4e-09
TIGR03516	177	TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase,	9e-09
PRK15095	156	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-	2e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-05
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	5e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	9e-05
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	3e-04
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	4e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	6e-04
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	0.001
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	0.002

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score =  143 bits (362), Expect = 1e-41
 Identities = 59/94 (62%), Positives = 65/94 (69%), Gaps = 1/94 (1%)

Query: 49  GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGEN 108
           G +  + GD V VHYTG L DGT FDSS+DR  PF+FTLG G VI GWD G+  MK GE 
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 109 AVFTIPPELAYGESGS-PPTIPPNATLQFDVELL 141
              TIPPELAYGE G     IPPNATL F+VELL
Sbjct: 61  RKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score =  143 bits (363), Expect = 3e-40
 Identities = 62/105 (59%), Positives = 73/105 (69%), Gaps = 3/105 (2%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL+ K++K G+G   P+ GD V VHYTGTL+DGT FDSS DR  P +F LG   VI GWD
Sbjct: 102 GLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLGG--VIPGWD 158

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G++ MK G     TIPPELAYGE G P  IPPN+TL F+VELL 
Sbjct: 159 EGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 99.5 bits (248), Expect = 2e-23
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  K+ KEG G + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW 
Sbjct: 147 GLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWT 203

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G+K +KKG      IPPELAYG++G  P IP N+TL FDVELL 
Sbjct: 204 EGLKNIKKGGKIKLVIPPELAYGKAGV-PGIPANSTLVFDVELLD 247

Length = 269

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 93.1 bits (232), Expect = 3e-23
 Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEV 343
           E+  +G  V V   GKL+DGTVF         + FEF     QVI G D  ++ MK  E 
Sbjct: 3   EKAKKGDTVTVHYTGKLEDGTVFDSSKD--RGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
             LTI PE A+G         V+PPN+T+ +EVEL+
Sbjct: 61  RKLTIPPELAYGEEGLAG--GVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 95.6 bits (238), Expect = 9e-23
 Identities = 50/104 (48%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL+ +++ +GEG   P   D V VHYTG L+DGT FDSS  R  P +F +    VI GW 
Sbjct: 103 GLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWI 159

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             +  M  G     TIP ELAYGE G+  +IPP +TL F+VELL
Sbjct: 160 EALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 74.2 bits (183), Expect = 2e-16
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 165 KWENPKDLDEVLVNYEARLEDGMVV----GKADGVEFTVKDGHFCPTLAKAVKTMKKGEK 220
             E  K  D V V+Y  +LEDG V      +    EFT+  G   P   + +  MK GEK
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 221 VLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
             L + P+  +GE+G       G +PPNATL   +EL+
Sbjct: 61  RKLTIPPELAYGEEGL----AGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 44/114 (38%), Positives = 55/114 (48%), Gaps = 14/114 (12%)

Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQV 327
            +  K+LK GDG   P +G  V V   G L DGTVF     +G     Q  EF      V
Sbjct: 102 GLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRG-----QPAEFPLG--GV 153

Query: 328 IDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
           I G D  +  MK      LTI PE A+G    +    V+PPNST+ +EVEL+  
Sbjct: 154 IPGWDEGLQGMKVGGKRKLTIPPELAYG---ERGVPGVIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 25/68 (36%), Positives = 36/68 (52%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           E GD V +HYT  + DG   D++ +   P  F +G G +I G +  +   + GE     I
Sbjct: 4   EKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEI 63

Query: 114 PPELAYGE 121
           PPE A+GE
Sbjct: 64  PPEDAFGE 71

Length = 174

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 153 GGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV--GKADGVEFTVKDGHFCPTLAK 210
            G+  K+LK G+    PK  D V V+Y   L DG V       G       G   P   +
Sbjct: 101 SGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLGGVIPGWDE 159

Query: 211 AVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
            ++ MK G K  L + P+  +GE+G       G +PPN+TL   +EL+ 
Sbjct: 160 GLQGMKVGGKRKLTIPPELAYGERGVP-----GVIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|132555 TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase, gliding motility-associated

 Score = 54.4 bits (131), Expect = 9e-09
 Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 52  TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF 111
           TPE GD V   Y    LDG    S  +   P  + + Q ++  G   G+K MK+GE A F
Sbjct: 85  TPEFGDLVTFEYDIRALDGDVIYSEEELG-PQTYKVDQQDLFSGLRDGLKLMKEGETATF 143

Query: 112 TIPPELAYGESGSPPTIPPNATLQFDVELLS 142
             P   AYG  G    I PN  +   V LL+
Sbjct: 144 LFPSHKAYGYYGDQNKIGPNLPIISTVTLLN 174

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype. Length = 177

>gnl|CDD|237908 PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           ++   V VH+T  L DG+  +S+R+   P  F LG G++ +G +  +  +K G+   F++
Sbjct: 6   QSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSL 65

Query: 114 PPELAYGESGSPPTI 128
            PE A+G   SP  I
Sbjct: 66  EPEAAFGVP-SPDLI 79

Length = 156

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 16/81 (19%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           + A   K  GN LFK G Y  A + YEKA++           +   A+A       N A 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALEL----------DPDNAEAY-----YNLAL 45

Query: 457 CKLKL-KDYKQAEKLCTKVQQ 476
             LKL KDY++A +   K  +
Sbjct: 46  AYLKLGKDYEEALEDLEKALE 66

Length = 69

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 173 DEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ 228
           D V ++Y  ++EDG VV   D     + F V  G   P L +A+   + GE+  + + P+
Sbjct: 7   DVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPE 66

Query: 229 YGFGE 233
             FGE
Sbjct: 67  DAFGE 71

Length = 174

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 15/72 (20%)

Query: 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK 462
              GN  +K G Y  A + YEKA++           +   A A       N AA   KL 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALEL----------DPDNADAY-----YNLAAAYYKLG 48

Query: 463 DYKQAEKLCTKV 474
            Y++A +   K 
Sbjct: 49  KYEEALEDYEKA 60

Length = 100

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 287 NEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346
            +G VV +    K++DG V       E      F     Q+I GL+ A++  +  E   +
Sbjct: 4   EKGDVVSLHYTLKVEDGEVVDTTD--ENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTV 61

Query: 347 TIAPEYAFG 355
            I PE AFG
Sbjct: 62  EIPPEDAFG 70

Length = 174

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 9/110 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKA 211
           G++ K+ KEG   E PKD D V+VNY+  L DG     +   G   + +     P   + 
Sbjct: 147 GLLYKVEKEG-TGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEG 205

Query: 212 VKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           +K +KKG K+ L + P+  +G+ G         +P N+TL   +EL+  K
Sbjct: 206 LKNIKKGGKIKLVIPPELAYGKAGVP------GIPANSTLVFDVELLDVK 249

Length = 269

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
              L + G Y  A +  EKA++        G++  + A+AL      N A   L L DY 
Sbjct: 12  ALVLRRLGDYDEALELLEKALELAR---ELGEDHPETARAL-----NNLARLYLALGDYD 63

Query: 466 QAEKLCTKV 474
           +A +   K 
Sbjct: 64  EALEYLEKA 72

Length = 78

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
           + G+  ++L +GE    P   D V V+Y  +L DG V    V + +  EF V      P 
Sbjct: 101 ESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPV--NGVIPG 157

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
             +A+  M  G K  L +  +  +GE+G  AS     +PP +TL   +EL+
Sbjct: 158 WIEALTLMPVGSKWELTIPHELAYGERGAGAS-----IPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 14/108 (12%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           ++L +G+G   P     V+V   GKL DGTVF   V +G     +  EF  +   VI G 
Sbjct: 107 RVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARG-----EPAEFPVN--GVIPGW 158

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
             A+  M       LTI  E A+G   +    A +PP ST+ +EVEL+
Sbjct: 159 IEALTLMPVGSKWELTIPHELAYGERGAG---ASIPPFSTLVFEVELL 203

Length = 206

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	492
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.98
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.97
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.96
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.94
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.94
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.93
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.92
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.91
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.87
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.85
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.84
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.83
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.83
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.82
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.8
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.79
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.79
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.78
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.78
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.76
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.73
KOG4234	271	consensus TPR repeat-containing protein [General f	99.58
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.56
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.55
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.45
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.43
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.43
KOG0553	304	consensus TPR repeat-containing protein [General f	99.42
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.3
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.27
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.16
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.07
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.96
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.94
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.79
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.72
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.72
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.69
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.67
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.6
PRK01490	435	tig trigger factor; Provisional	98.6
PRK01490	435	tig trigger factor; Provisional	98.57
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.55
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.46
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	98.42
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.35
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.31
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.19
PRK15359	144	type III secretion system chaperone protein SscB;	98.18
PRK15359	144	type III secretion system chaperone protein SscB;	98.15
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.1
PF13371	73	TPR_9: Tetratricopeptide repeat	98.1
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.08
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.07
KOG1310	758	consensus WD40 repeat protein [General function pr	98.07
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.87
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.81
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.73
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.72
PRK11189	296	lipoprotein NlpI; Provisional	97.7
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.67
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.61
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.58
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.51
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.44
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.43
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.43
KOG4555	175	consensus TPR repeat-containing protein [Function	97.41
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.4
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.38
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.35
PF13512	142	TPR_18: Tetratricopeptide repeat	97.34
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.3
PRK11189	296	lipoprotein NlpI; Provisional	97.29
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.23
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.21
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.14
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.14
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.1
KOG0553	304	consensus TPR repeat-containing protein [General f	97.09
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.03
PF13428	44	TPR_14: Tetratricopeptide repeat	97.02
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.01
PRK15331	165	chaperone protein SicA; Provisional	96.98
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.96
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.95
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	96.94
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.94
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.92
KOG2003	840	consensus TPR repeat-containing protein [General f	96.87
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	96.85
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.85
PRK12370	553	invasion protein regulator; Provisional	96.81
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.8
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.74
KOG4234	271	consensus TPR repeat-containing protein [General f	96.73
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.69
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.66
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.66
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.57
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	96.55
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.53
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.52
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.5
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.5
KOG1125	579	consensus TPR repeat-containing protein [General f	96.46
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.4
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.36
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	96.35
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.26
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.24
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.24
PRK10803	263	tol-pal system protein YbgF; Provisional	96.24
PRK10803	263	tol-pal system protein YbgF; Provisional	96.2
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.13
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.12
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.1
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.1
KOG2076	895	consensus RNA polymerase III transcription factor	95.97
KOG1125	579	consensus TPR repeat-containing protein [General f	95.93
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.92
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	95.92
KOG1128	777	consensus Uncharacterized conserved protein, conta	95.88
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.87
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	95.87
PLN02789	320	farnesyltranstransferase	95.85
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.84
PF13431	34	TPR_17: Tetratricopeptide repeat	95.78
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.77
PRK12370	553	invasion protein regulator; Provisional	95.72
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.72
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	95.71
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.7
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.62
PLN02789	320	farnesyltranstransferase	95.6
KOG2003	840	consensus TPR repeat-containing protein [General f	95.54
PF12688	120	TPR_5: Tetratrico peptide repeat	95.39
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.39
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	95.33
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	95.23
KOG4648	536	consensus Uncharacterized conserved protein, conta	95.22
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	95.2
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.14
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	95.1
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	94.96
KOG1126	638	consensus DNA-binding cell division cycle control	94.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	94.94
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.82
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	94.76
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	94.72
PRK11788	389	tetratricopeptide repeat protein; Provisional	94.67
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	94.59
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	94.55
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	94.54
COG4783	484	Putative Zn-dependent protease, contains TPR repea	94.51
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.51
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	94.5
KOG3060	289	consensus Uncharacterized conserved protein [Funct	94.46
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	94.41
PRK11788	389	tetratricopeptide repeat protein; Provisional	94.38
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	94.35
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.29
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	94.27
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	94.2
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.12
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	93.94
KOG1126	638	consensus DNA-binding cell division cycle control	93.84
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.79
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.76
KOG0547	606	consensus Translocase of outer mitochondrial membr	93.72
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	93.57
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.39
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	93.33
PRK14574	822	hmsH outer membrane protein; Provisional	93.17
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.06
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	93.06
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.87
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	92.73
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	92.65
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	92.49
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	92.4
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	92.38
KOG3364	149	consensus Membrane protein involved in organellar	92.32
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	92.18
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	92.15
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	92.1
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	91.94
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	91.81
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	91.81
PF04212	69	MIT: MIT (microtubule interacting and transport) d	91.78
KOG1128	777	consensus Uncharacterized conserved protein, conta	91.57
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	91.26
PF13371	73	TPR_9: Tetratricopeptide repeat	90.83
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	90.71
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	90.4
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	90.32
PRK14574	822	hmsH outer membrane protein; Provisional	90.23
COG3947	361	Response regulator containing CheY-like receiver a	90.2
PRK14720	906	transcript cleavage factor/unknown domain fusion p	90.1
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	89.89
cd02656	75	MIT MIT: domain contained within Microtubule Inter	89.83
KOG1129	478	consensus TPR repeat-containing protein [General f	89.79
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	89.57
KOG2796	366	consensus Uncharacterized conserved protein [Funct	89.24
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	89.14
PF13431	34	TPR_17: Tetratricopeptide repeat	89.06
PF03704	146	BTAD: Bacterial transcriptional activator domain;	89.04
KOG3785	557	consensus Uncharacterized conserved protein [Funct	89.03
PRK15331	165	chaperone protein SicA; Provisional	88.57
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	88.55
KOG2076	895	consensus RNA polymerase III transcription factor	88.4
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	88.34
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.84
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	87.67
PF13428	44	TPR_14: Tetratricopeptide repeat	87.57
KOG2376	652	consensus Signal recognition particle, subunit Srp	87.49
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	87.47
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	87.43
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	87.35
PF13512	142	TPR_18: Tetratricopeptide repeat	86.92
KOG1129	478	consensus TPR repeat-containing protein [General f	86.87
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	86.42
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	86.38
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	86.16
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	85.76
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	85.74
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	85.73
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	85.5
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	85.45
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	84.99
KOG1586	288	consensus Protein required for fusion of vesicles	84.99
KOG3785	557	consensus Uncharacterized conserved protein [Funct	84.41
KOG2376	652	consensus Signal recognition particle, subunit Srp	84.22
PRK14720	906	transcript cleavage factor/unknown domain fusion p	84.02
PF12688	120	TPR_5: Tetratrico peptide repeat	83.27
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	83.22
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	82.77
COG4976	287	Predicted methyltransferase (contains TPR repeat)	82.22
COG4700	251	Uncharacterized protein conserved in bacteria cont	81.58
KOG1941	518	consensus Acetylcholine receptor-associated protei	80.59
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	80.48
KOG1585	308	consensus Protein required for fusion of vesicles	80.42

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.6e-54  Score=412.77  Aligned_cols=293  Identities=48%  Similarity=0.764  Sum_probs=271.0

Q ss_pred             cCcccCCCCCcceEEEEEEEEcCCCcEEeee---cCeeeEeCCCCccchHHHHHhccccCcEEEEEecCCCccCCCCCCC
Q 011164          162 EGEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA  238 (492)
Q Consensus       162 ~g~g~~~~~~~d~V~v~y~~~l~~g~~~~~~---~~~~~~~g~~~~~~~l~~~l~~m~~ge~~~i~vp~~~~~g~~~~~~  238 (492)
                      .|+|+.+|..|+.|.+||++++.+|+.|+++   +++.|.+|.+.++.+|..++.+|+.|              +.+.| 
T Consensus         2 eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~g--------------~~~~p-   66 (397)
T KOG0543|consen    2 EGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKKG--------------EAGSP-   66 (397)
T ss_pred             CCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCcccccccccccccccc--------------ccCCC-
Confidence            5788999999999999999999999999987   58999999999999999999999983              33332 


Q ss_pred             CCCCCCCCCCCeEEEEEEeecccceeeeeCCccEEEEEEecCCC-CCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCccc
Q 011164          239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQL  317 (492)
Q Consensus       239 ~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~v~k~il~~G~g-~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~  317 (492)
                          ..||++++|.|+|+|.          |++|+|+|+++|.| .++|..|.+|.+||.+.+.|+ +|+++.     ..
T Consensus        67 ----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~-----~~  126 (397)
T KOG0543|consen   67 ----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE-----LR  126 (397)
T ss_pred             ----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc-----cc
Confidence                4699999999999997          99999999999999 799999999999999999887 776542     33


Q ss_pred             EEEEcCC-cccchhHHHHHhccCcCcEEEEEECCCCccCCCccccccccCCCCccEEEEEEEeeee-ecccCCCCChHHH
Q 011164          318 FEFKTDE-EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE-KEKESWDMNTEEK  395 (492)
Q Consensus       318 ~~~~lg~-~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~-~~~~~~~~~~~e~  395 (492)
                      +.|.+|+ ..++.||+.||+.|++||++.|+|+|+||||..+..  .+.|||+++|.|+|+|++|. +....|.|..+++
T Consensus       127 fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~--~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~  204 (397)
T KOG0543|consen  127 FEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE--PPLIPPNATLLYEVELLDFELKEDESWKMFAEER  204 (397)
T ss_pred             eEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC--CCCCCCCceEEEEEEEEeeecCcccccccchHHH
Confidence            8888898 589999999999999999999999999999965544  37899999999999999999 8899999999999


Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHH
Q 011164          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQ  475 (492)
Q Consensus       396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al  475 (492)
                      ++.|...|++||.+||+++|..|+..|++|+++|+++.+.++++.+...+++..||+|+|+||+|+++|..|+..|++||
T Consensus       205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCccceeeeecc
Q 011164          476 QQKKFLLLPIFNIYAR  491 (492)
Q Consensus       476 ~~dp~n~KA~~r~~~~  491 (492)
                      +++|+|+|||||+--|
T Consensus       285 e~~~~N~KALyRrG~A  300 (397)
T KOG0543|consen  285 ELDPNNVKALYRRGQA  300 (397)
T ss_pred             hcCCCchhHHHHHHHH
Confidence            9999999999997543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.2e-32  Score=265.05  Aligned_cols=319  Identities=39%  Similarity=0.606  Sum_probs=237.4

Q ss_pred             EcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCC
Q 011164           45 KEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS  124 (492)
Q Consensus        45 ~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~  124 (492)
                      ++|+|+..|..||.|.+||++++.||+.||||.+ +.|+.|.+|.+.++.||..++..|+.              |+.+.
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~   65 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS   65 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCC
Confidence            4799999999999999999999999999999998 79999999999999999999999998              67777


Q ss_pred             CCCCCCCCceEEEEEEEEEeecccccccccceeeeeecCcc-cCCCCCcceEEEEEEEEcCCCcEEeee-cCeeeEeCC-
Q 011164          125 PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEK-WENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKD-  201 (492)
Q Consensus       125 ~~~i~~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g-~~~~~~~d~V~v~y~~~l~~g~~~~~~-~~~~~~~g~-  201 (492)
                      ++.+|++.++.|+|+|+          |++++++|+..|.| ..+|..+..|.|||.+.+.++ +|+++ ..+.|..|+ 
T Consensus        66 pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~~fe~~~Ge~  134 (397)
T KOG0543|consen   66 PPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRELRFEFGEGED  134 (397)
T ss_pred             CCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccccceEEecCCc
Confidence            88999999999999997          88999999999999 899999999999999999998 66665 556888888 


Q ss_pred             CCccchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeeCCccEEEEEEecCC
Q 011164          202 GHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD  281 (492)
Q Consensus       202 ~~~~~~l~~~l~~m~~ge~~~i~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~v~k~il~~G~  281 (492)
                      ..++.||+.++..|++||.+.|+|+|.|+||+.+..    ...|||+++|.|+|+|++|....+....            
T Consensus       135 ~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~----~p~IPPnA~l~yEVeL~~f~~~~~~s~~------------  198 (397)
T KOG0543|consen  135 IDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE----PPLIPPNATLLYEVELLDFELKEDESWK------------  198 (397)
T ss_pred             cchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC----CCCCCCCceEEEEEEEEeeecCcccccc------------
Confidence            469999999999999999999999999999944332    3689999999999999999632111000            


Q ss_pred             CCCCCCCCCEEEEEEEEEE-cCCcEEEEcCCCCCcccEEEEcCCc-ccchhHHHHHhccCcCcEEEEEECCCCccCCCcc
Q 011164          282 GFERPNEGAVVKVKLIGKL-QDGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAES  359 (492)
Q Consensus       282 g~~~p~~g~~V~v~y~~~~-~~g~~~d~~~~~~~~~~~~~~lg~~-~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~  359 (492)
                            .++..++.+..+. ..|+.+             |.-|.- .-..-.+.|+.-|.              |.    
T Consensus       199 ------~~~~e~l~~A~~~ke~Gn~~-------------fK~gk~~~A~~~Yerav~~l~--------------~~----  241 (397)
T KOG0543|consen  199 ------MFAEERLEAADRKKERGNVL-------------FKEGKFKLAKKRYERAVSFLE--------------YR----  241 (397)
T ss_pred             ------cchHHHHHHHHHHHHhhhHH-------------HhhchHHHHHHHHHHHHHHhh--------------cc----
Confidence                  0000000000000 012111             222210 11111222222110              00    


Q ss_pred             ccccccCCCCccEEEEEEEeeeeecccCCCCChHHHHHHHH---HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC
Q 011164          360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAG---KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG  436 (492)
Q Consensus       360 ~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~~~~~e~l~~a~---~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~  436 (492)
                                                ..+.. .+++...+.   .+.+.+-.+.|.++|..|+..=.++|.+        
T Consensus       242 --------------------------~~~~~-ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--------  286 (397)
T KOG0543|consen  242 --------------------------RSFDE-EEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--------  286 (397)
T ss_pred             --------------------------ccCCH-HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--------
Confidence                                      00000 111221111   2334455567889999999998888876        


Q ss_pred             hHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164          437 DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI  485 (492)
Q Consensus       437 ~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~  485 (492)
                             ++-++..+.-++.|++.+++|+.|+.++.+|++++|+| ||.
T Consensus       287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~  327 (397)
T KOG0543|consen  287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAA  327 (397)
T ss_pred             -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHH
Confidence                   44568888999999999999999999999999999999 553

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.4e-30  Score=220.66  Aligned_cols=176  Identities=28%  Similarity=0.472  Sum_probs=147.6

Q ss_pred             eEeCCCCccchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc---eeeeeCCccEE
Q 011164          197 FTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT---VSEITDDKKVI  273 (492)
Q Consensus       197 ~~~g~~~~~~~l~~~l~~m~~ge~~~i~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~---~~d~~~d~~v~  273 (492)
                      |++|.+.++++.+.++.+|+.||++.+.+||+++||..+-.         ..-.+.|.+.++....   ......++.+.
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~   71 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG---------DLNILVITILLVLLFRASAAEKWNPDEELQ   71 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc---------cccceEEEeeeeehhhhhhhhhcCCCCcee
Confidence            46788999999999999999999999999999999954332         2234667777666532   23344456666


Q ss_pred             EEEEecC-CCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCC
Q 011164          274 KKILKEG-DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEY  352 (492)
Q Consensus       274 k~il~~G-~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~  352 (492)
                      -.++++- .+..+...||.+.+||++.+.||++||||+  +.++|++|+||.+++|+||+++|.+||+||++.++|||++
T Consensus        72 I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~--~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~L  149 (188)
T KOG0549|consen   72 IGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSY--SRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHL  149 (188)
T ss_pred             EEEEECCccccccccCCCEEEEEEEEEecCCCEEeeec--cCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccc
Confidence            6666552 266788999999999999999999999998  4779999999999999999999999999999999999999


Q ss_pred             ccCCCccccccccCCCCccEEEEEEEeeeeeccc
Q 011164          353 AFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE  386 (492)
Q Consensus       353 ~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~  386 (492)
                      |||++|.+   +.||++++|+|+|||+++.+.+.
T Consensus       150 gYG~~G~~---~~IP~~A~LiFdiELv~i~~~~~  180 (188)
T KOG0549|consen  150 GYGERGAP---PKIPGDAVLIFDIELVKIERGPP  180 (188)
T ss_pred             cCccCCCC---CCCCCCeeEEEEEEEEEeecCCC
Confidence            99999986   45999999999999999997644

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=5.5e-30  Score=229.02  Aligned_cols=221  Identities=23%  Similarity=0.317  Sum_probs=186.5

Q ss_pred             CCccEEEEEEecCCCCCCC--CCCCEEEEEEEEEEcC--CcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcE
Q 011164          268 DDKKVIKKILKEGDGFERP--NEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEV  343 (492)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p--~~g~~V~v~y~~~~~~--g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~  343 (492)
                      .-.++.|+|+..|+| .-|  ..|.+|++||.....+  ++++|+|..  -+.|+++.+|.-.-++.||.+|.+|.++|.
T Consensus         8 ~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~Ev   84 (329)
T KOG0545|consen    8 NVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHEV   84 (329)
T ss_pred             cchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhhH
Confidence            345799999999999 554  6799999999998865  578998874  789999999999999999999999999999


Q ss_pred             EEEEECCCC--------------ccCC--------------------CccccccccCCCCccEEEEEEEeeeee----cc
Q 011164          344 ALLTIAPEY--------------AFGS--------------------AESQQELAVVPPNSTVHYEVELVSFEK----EK  385 (492)
Q Consensus       344 ~~i~ip~~~--------------~yg~--------------------~~~~~~~~~ip~~~~l~~~v~l~~~~~----~~  385 (492)
                      +.|+|.-..              +-|.                    .|..+......--++|+|.|+|+.+..    ..
T Consensus        85 aqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~  164 (329)
T KOG0545|consen   85 AQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQR  164 (329)
T ss_pred             HHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhcc
Confidence            999986421              1111                    111110111123368999999999996    46


Q ss_pred             cCCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc---CCCChHHHHHHHHHHHHhHhHHHHHHHHhc
Q 011164          386 ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD---TSFGDEEKKQAKALKVACNLNNAACKLKLK  462 (492)
Q Consensus       386 ~~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~---~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~  462 (492)
                      ++|.|+.+|++..+..++++||.+|++|+|++|..+|+.|+-.+...   ....+.++.+++.+...+++|.|+|+++.+
T Consensus       165 e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~  244 (329)
T KOG0545|consen  165 ETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE  244 (329)
T ss_pred             ccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH
Confidence            78999999999999999999999999999999999999999887653   456678999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCccceeeeecc
Q 011164          463 DYKQAEKLCTKVQQQKKFLLLPIFNIYAR  491 (492)
Q Consensus       463 ~~~~ai~~~~~al~~dp~n~KA~~r~~~~  491 (492)
                      +|.+++++|+.+|..+|.|+|||||++-|
T Consensus       245 e~yevleh~seiL~~~~~nvKA~frRakA  273 (329)
T KOG0545|consen  245 EYYEVLEHCSEILRHHPGNVKAYFRRAKA  273 (329)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            99999999999999999999999998643

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.7e-26  Score=174.04  Aligned_cols=106  Identities=58%  Similarity=1.029  Sum_probs=103.5

Q ss_pred             CeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCc
Q 011164           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL  117 (492)
Q Consensus        38 g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~  117 (492)
                      |+.++++..|+|...|++||+|++||++.+.||+.||||.+++.|+.|.+|.+.+|+||++++..|.+||+++++|+|++
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~   81 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY   81 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence            68999999999988999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCceEEEEEEEEE
Q 011164          118 AYGESGSPPTIPPNATLQFDVELLSW  143 (492)
Q Consensus       118 ayg~~~~~~~i~~~~~l~~~vel~~~  143 (492)
                      |||..+.+..||+|++|+|+|||+++
T Consensus        82 aYG~~G~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   82 AYGPRGHPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccCCCCCCCccCCCcEEEEEEEEEec
Confidence            99999999999999999999999986

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.1e-26  Score=172.59  Aligned_cols=107  Identities=37%  Similarity=0.642  Sum_probs=101.1

Q ss_pred             cEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECC
Q 011164          271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAP  350 (492)
Q Consensus       271 ~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~  350 (492)
                      ++.+.++.+|+|...|..|++|++||++.+.||+.|||+.  +.+.|+.|.+|.|++|.||++++..|.+||++.+.|+|
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~--dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~p   79 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSR--DRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISP   79 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeeccc--ccCCCeeEEecCcceeechhhcchhccccccceeeecc
Confidence            4778999999999999999999999999999999999987  57899999999999999999999999999999999999


Q ss_pred             CCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          351 EYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       351 ~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      ++|||..|.+   ..|||+++|+|+|||+++.
T Consensus        80 d~aYG~~G~p---~~IppNatL~FdVEll~v~  108 (108)
T KOG0544|consen   80 DYAYGPRGHP---GGIPPNATLVFDVELLKVN  108 (108)
T ss_pred             ccccCCCCCC---CccCCCcEEEEEEEEEecC
Confidence            9999999854   6899999999999999873

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.2e-25  Score=197.60  Aligned_cols=108  Identities=57%  Similarity=0.977  Sum_probs=104.4

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEE
Q 011164           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (492)
Q Consensus        33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~  112 (492)
                      ..+++|++|++++.|+| ..|..++.|.+||++++.||++||||+++++|+.|.||  ++|+||.++|.+|++|++++++
T Consensus        97 ~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~  173 (205)
T COG0545          97 KTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLT  173 (205)
T ss_pred             eECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEE
Confidence            56899999999999999 89999999999999999999999999999999999999  9999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011164          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (492)
Q Consensus       113 i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~  143 (492)
                      |||++|||..+.+..||+|++|+|+|+|+++
T Consensus       174 IP~~laYG~~g~~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         174 IPPELAYGERGVPGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             eCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence            9999999999987779999999999999986

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=8.4e-25  Score=187.61  Aligned_cols=169  Identities=32%  Similarity=0.470  Sum_probs=136.7

Q ss_pred             EEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEeeccc---ccccccceeeeee
Q 011164           85 FTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKD---ICKDGGIIKKILK  161 (492)
Q Consensus        85 f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~~~~---~~~d~~~~k~i~~  161 (492)
                      |.+|.++++++.+.++.+|..||++.+.+||+++||..+..    .-..+++.+.++....+..   ...+..+-..+..
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~   76 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLFRASAAEKWNPDEELQIGVLK   76 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc----cccceEEEeeeeehhhhhhhhhcCCCCceeEEEEE
Confidence            45788899999999999999999999999999999955432    2234566666555433211   1122333333333


Q ss_pred             c-CcccCCCCCcceEEEEEEEEcCCCcEEeee----cCeeeEeCCCCccchHHHHHhccccCcEEEEEecCCCccCCCCC
Q 011164          162 E-GEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK  236 (492)
Q Consensus       162 ~-g~g~~~~~~~d~V~v~y~~~l~~g~~~~~~----~~~~~~~g~~~~~~~l~~~l~~m~~ge~~~i~vp~~~~~g~~~~  236 (492)
                      . ..+..+...||.+.+||++.+.||++|+++    .|+.|.+|.+++++||+.+|.+|++||++.+.|||+|+||+.|.
T Consensus        77 ~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~  156 (188)
T KOG0549|consen   77 KPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGA  156 (188)
T ss_pred             CCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCC
Confidence            2 336678889999999999999999999987    69999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCeEEEEEEeecccc
Q 011164          237 SASGNEGAVPPNATLQIALELVSWKT  262 (492)
Q Consensus       237 ~~~~~~~~ip~~~~l~~~v~l~~~~~  262 (492)
                      +     ..||++++|.|+|+|+....
T Consensus       157 ~-----~~IP~~A~LiFdiELv~i~~  177 (188)
T KOG0549|consen  157 P-----PKIPGDAVLIFDIELVKIER  177 (188)
T ss_pred             C-----CCCCCCeeEEEEEEEEEeec
Confidence            6     45999999999999998864

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=4e-24  Score=187.92  Aligned_cols=107  Identities=41%  Similarity=0.583  Sum_probs=100.5

Q ss_pred             eCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEE
Q 011164          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (492)
Q Consensus       267 ~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i  346 (492)
                      +.++++.+++++.|.| ..|..+++|++||+|++.||++||+|+  ..++|+.|.||  ++|+||..+|.+|++|+++++
T Consensus        98 ~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~--~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l  172 (205)
T COG0545          98 TLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSY--DRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKL  172 (205)
T ss_pred             ECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCcccccc--ccCCCceeecC--CeeehHHHHHhhCCCCceEEE
Confidence            3577899999999999 999999999999999999999999997  48899999999  999999999999999999999


Q ss_pred             EECCCCccCCCccccccccCCCCccEEEEEEEeee
Q 011164          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (492)
Q Consensus       347 ~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~  381 (492)
                      +|||++|||..+.+   ..|||+++|+|+|+|+++
T Consensus       173 ~IP~~laYG~~g~~---g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         173 TIPPELAYGERGVP---GVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             EeCchhccCcCCCC---CCCCCCCeEEEEEEEEec
Confidence            99999999999865   359999999999999987

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.87  E-value=1.5e-21  Score=178.40  Aligned_cols=108  Identities=46%  Similarity=0.776  Sum_probs=103.4

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEE
Q 011164           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (492)
Q Consensus        33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~  112 (492)
                      ..+++|++|+++++|+| ..|..+|.|.+||++++.||++|++|+.++.|+.|.+|  ++++||+++|.+|++|+++.|+
T Consensus        98 ~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~  174 (206)
T PRK11570         98 NSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT  174 (206)
T ss_pred             EECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE
Confidence            55899999999999999 78999999999999999999999999988899999997  7999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011164          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (492)
Q Consensus       113 i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~  143 (492)
                      ||+++|||+.+.++.||++++|+|+|+|+++
T Consensus       175 IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        175 IPHELAYGERGAGASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             ECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence            9999999999988899999999999999986

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.85  E-value=1e-20  Score=168.71  Aligned_cols=110  Identities=35%  Similarity=0.511  Sum_probs=102.4

Q ss_pred             eecCCCeEEEEEEc--ccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEE
Q 011164           33 EIGNQGLKKKLVKE--GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (492)
Q Consensus        33 ~~~~~g~~~~il~~--G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~  110 (492)
                      ..+++|++|.++..  |+| ..|+.||.|.+||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||+++
T Consensus        65 ~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~  142 (177)
T TIGR03516        65 ETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETAT  142 (177)
T ss_pred             eECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence            45789999999977  566 67999999999999999999999999874 699999999999999999999999999999


Q ss_pred             EEecCCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011164          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (492)
Q Consensus       111 ~~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~  144 (492)
                      |++||++|||..+.+..||+|++|+|+|+|+++.
T Consensus       143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence            9999999999999888999999999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.8e-20  Score=169.41  Aligned_cols=108  Identities=49%  Similarity=0.872  Sum_probs=103.3

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEec-CCCEEeecCCCCCcEE-EEcCCCcccHhHHHHhccCcCccEEE
Q 011164           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFK-FTLGQGNVIKGWDIGIKTMKKGENAV  110 (492)
Q Consensus        33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~-dg~~~~ss~~~~~p~~-f~lg~~~~~~gle~~l~~m~~Ge~~~  110 (492)
                      .+.++||+|+-++.|+| ..+..|+.|.+||.+++. +|.+|++++.. .|+. |.+|.+.+|+||+.++.||++|++++
T Consensus       116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr  193 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR  193 (226)
T ss_pred             eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence            46899999999999999 899999999999999998 99999999874 8999 99999999999999999999999999


Q ss_pred             EEecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011164          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (492)
Q Consensus       111 ~~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~  143 (492)
                      |+|||++|||..+.+ .||+|++|+|+|+|+.+
T Consensus       194 viIPp~lgYg~~g~~-~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  194 VIIPPELGYGKKGVP-EIPPNSTLVFDVELLSV  225 (226)
T ss_pred             EEeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence            999999999999987 89999999999999876

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.83  E-value=6.4e-20  Score=167.63  Aligned_cols=107  Identities=34%  Similarity=0.477  Sum_probs=98.8

Q ss_pred             eCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEE
Q 011164          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (492)
Q Consensus       267 ~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i  346 (492)
                      ..++++.++++++|.| ..|..+|.|.|||++++.||++||+++  ..+.|+.|.+|  .+++||+.+|.+|++|+++.|
T Consensus        99 ~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~--~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~  173 (206)
T PRK11570         99 STESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSV--ARGEPAEFPVN--GVIPGWIEALTLMPVGSKWEL  173 (206)
T ss_pred             ECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEecc--CCCCCeEEEee--chhhHHHHHHcCCCCCCEEEE
Confidence            3477899999999999 799999999999999999999999986  35789999996  799999999999999999999


Q ss_pred             EECCCCccCCCccccccccCCCCccEEEEEEEeee
Q 011164          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (492)
Q Consensus       347 ~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~  381 (492)
                      +|||++|||..+..   ..|||+++|+|+|+|++|
T Consensus       174 ~IP~~lAYG~~g~~---~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        174 TIPHELAYGERGAG---ASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             EECHHHcCCCCCCC---CCcCCCCeEEEEEEEEEE
Confidence            99999999998864   579999999999999987

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=4.4e-20  Score=166.87  Aligned_cols=109  Identities=33%  Similarity=0.495  Sum_probs=101.2

Q ss_pred             eeCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEc-CCcEEEEcCCCCCcccEE-EEcCCcccchhHHHHHhccCcCcE
Q 011164          266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFE-FKTDEEQVIDGLDRAVITMKKNEV  343 (492)
Q Consensus       266 ~~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~-~g~~~d~~~~~~~~~~~~-~~lg~~~~~~gle~~l~~m~~Ge~  343 (492)
                      .+-.++++++-++-|+| +.|..|++|.+||.+++. +|++||++.   ...|+. |.+|.+.+|+||+.++.+|++|.+
T Consensus       116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~---~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGk  191 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNF---GGKPFKLFRLGSGEVIKGWDVGVEGMKVGGK  191 (226)
T ss_pred             eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeeccc---CCCCccccccCCCCCCchHHHhhhhhccCCe
Confidence            34578999999999999 999999999999999998 899999884   678888 999999999999999999999999


Q ss_pred             EEEEECCCCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       344 ~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      ++|+|||.+|||..+.+    .|||+++|+|+|+|+.+.
T Consensus       192 RrviIPp~lgYg~~g~~----~IppnstL~fdVEL~~v~  226 (226)
T KOG0552|consen  192 RRVIIPPELGYGKKGVP----EIPPNSTLVFDVELLSVK  226 (226)
T ss_pred             eEEEeCccccccccCcC----cCCCCCcEEEEEEEEecC
Confidence            99999999999998875    599999999999999863

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.82  E-value=1.7e-19  Score=160.82  Aligned_cols=109  Identities=23%  Similarity=0.331  Sum_probs=98.4

Q ss_pred             eCCccEEEEEEec--CCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEE
Q 011164          267 TDDKKVIKKILKE--GDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA  344 (492)
Q Consensus       267 ~~d~~v~k~il~~--G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~  344 (492)
                      ..++|+.++++..  |+| ..|..||.|++||++++.||++|++++   ...|+.|.+|.+++++||+++|.+|++||++
T Consensus        66 ~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~---~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~  141 (177)
T TIGR03516        66 TSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEE---ELGPQTYKVDQQDLFSGLRDGLKLMKEGETA  141 (177)
T ss_pred             ECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCC---CCCCEEEEeCCcchhHHHHHHHcCCCCCCEE
Confidence            4567888888866  666 789999999999999999999999885   3459999999999999999999999999999


Q ss_pred             EEEECCCCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          345 LLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       345 ~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      .|.+||++|||..+..   ..|||+++|+|+|+|++|.
T Consensus       142 ~~~iP~~~AYG~~g~~---~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       142 TFLFPSHKAYGYYGDQ---NKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EEEECHHHcCCCCCCC---CCcCcCCcEEEEEEEEEec
Confidence            9999999999998764   5799999999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.80  E-value=5.1e-19  Score=167.53  Aligned_cols=109  Identities=50%  Similarity=0.883  Sum_probs=102.6

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEE
Q 011164           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (492)
Q Consensus        33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~  112 (492)
                      ..+++|++|+|+++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++  .+++||+++|.+|++|+++.|+
T Consensus       142 ~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~  218 (269)
T PRK10902        142 KTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  218 (269)
T ss_pred             EECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEE
Confidence            45899999999999999 78999999999999999999999999988899999996  6999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011164          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (492)
Q Consensus       113 i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~  145 (492)
                      ||++++||..+.+ .||+|++++|+|+|+++..
T Consensus       219 IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~  250 (269)
T PRK10902        219 IPPELAYGKAGVP-GIPANSTLVFDVELLDVKP  250 (269)
T ss_pred             ECchhhCCCCCCC-CCCCCCcEEEEEEEEEecc
Confidence            9999999999865 7999999999999999875

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.79  E-value=1.4e-18  Score=140.21  Aligned_cols=94  Identities=39%  Similarity=0.670  Sum_probs=86.3

Q ss_pred             CCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCcccc
Q 011164          282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQ  361 (492)
Q Consensus       282 g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~  361 (492)
                      |+.+|+.||.|++||++++.+|++|++++  ....|++|.+|.+.+++||+.+|.+|++||+++|.+|++++||..+...
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~--~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~   78 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSY--QEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP   78 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETT--TTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEee--ecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence            45679999999999999999999999985  3788999999999999999999999999999999999999999987743


Q ss_pred             ccccCCCCccEEEEEEEe
Q 011164          362 ELAVVPPNSTVHYEVELV  379 (492)
Q Consensus       362 ~~~~ip~~~~l~~~v~l~  379 (492)
                        ..||++++|+|+|+|+
T Consensus        79 --~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   79 --PKIPPNSTLVFEIELL   94 (94)
T ss_dssp             --TTBTTTSEEEEEEEEE
T ss_pred             --CCcCCCCeEEEEEEEC
Confidence              4599999999999996

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=5.3e-19  Score=153.16  Aligned_cols=135  Identities=27%  Similarity=0.366  Sum_probs=103.5

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCC
Q 011164           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (492)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~  131 (492)
                      ++++||.|+++|++++.||++||+|...+.|+.|++|.+++++|||+||.+|.+|++..|.|||+.|||+++..      
T Consensus         2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~------   75 (174)
T COG1047           2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPD------   75 (174)
T ss_pred             cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChH------
Confidence            47899999999999999999999998767999999999999999999999999999999999999999998742      


Q ss_pred             CceEEEEEEEEEeecccccccccceeeeeecC-----cccCCCCCcceEEEEEEEEcCCCcEEeeecCeeeE
Q 011164          132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEG-----EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFT  198 (492)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g-----~g~~~~~~~d~V~v~y~~~l~~g~~~~~~~~~~~~  198 (492)
                        ++-.+.+-.|....    +....+++...+     .+.++...++.|+|||||+||+.++.|+-+-....
T Consensus        76 --lvq~vp~~~F~~~~----~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~  141 (174)
T COG1047          76 --LVQRVPRDEFQGVG----ELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVR  141 (174)
T ss_pred             --HeEEecHHHhCcCC----CCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEe
Confidence              33333332222211    111222222222     33455566789999999999999999987655443

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.78  E-value=2e-18  Score=139.33  Aligned_cols=93  Identities=56%  Similarity=0.979  Sum_probs=87.1

Q ss_pred             CcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCC-CCC
Q 011164           49 GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPT  127 (492)
Q Consensus        49 G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~-~~~  127 (492)
                      |.++|+.||.|.|||++++.+|+++++++..+.|+.|.+|.+++++||+++|.+|++||+++|.||++++||+.+. +..
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~   80 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK   80 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence            4467999999999999999999999999877899999999999999999999999999999999999999999987 457


Q ss_pred             CCCCCceEEEEEEE
Q 011164          128 IPPNATLQFDVELL  141 (492)
Q Consensus       128 i~~~~~l~~~vel~  141 (492)
                      ||++++++|+|+|+
T Consensus        81 ip~~~~l~f~Iell   94 (94)
T PF00254_consen   81 IPPNSTLVFEIELL   94 (94)
T ss_dssp             BTTTSEEEEEEEEE
T ss_pred             cCCCCeEEEEEEEC
Confidence            99999999999986

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.78  E-value=5.2e-19  Score=154.70  Aligned_cols=134  Identities=22%  Similarity=0.338  Sum_probs=97.6

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCC
Q 011164           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (492)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~  131 (492)
                      .++.|+.|.+||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|+++.|.|||++|||+++.       
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~-------   76 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSP-------   76 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh-------
Confidence            5789999999999999999999999877799999999999999999999999999999999999999998763       


Q ss_pred             CceEEEEEEEEEeecccccccccceeeeeecC---cccCCCCCcceEEEEEEEEcCCCcEEeeecC
Q 011164          132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEG---EKWENPKDLDEVLVNYEARLEDGMVVGKADG  194 (492)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g---~g~~~~~~~d~V~v~y~~~l~~g~~~~~~~~  194 (492)
                       .++..+....+...... ..+..+......|   .+.++-..++.|++||||+|||.++.|+-+-
T Consensus        77 -~~v~~vp~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L~f~v~i  140 (156)
T PRK15095         77 -DLIQYFSRRDFMDAGEP-EIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEV  140 (156)
T ss_pred             -HHEEEecHHHCCcccCC-CCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEE
Confidence             23333333222110000 0111100000111   1122334558999999999999999887643

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.76  E-value=9.7e-18  Score=158.88  Aligned_cols=108  Identities=32%  Similarity=0.512  Sum_probs=98.6

Q ss_pred             CCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEE
Q 011164          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (492)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~  347 (492)
                      .++|++++++++|.| ..|..||.|+|||++++.||++|++++  ..+.|+.|.++  .+++||+.+|.+|++|+++.|+
T Consensus       144 t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~--~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~  218 (269)
T PRK10902        144 TSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSY--TRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  218 (269)
T ss_pred             CCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccc--cCCCceEEecC--CcchHHHHHHhcCCCCcEEEEE
Confidence            477999999999999 799999999999999999999999886  35678889886  6999999999999999999999


Q ss_pred             ECCCCccCCCccccccccCCCCccEEEEEEEeeeeec
Q 011164          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE  384 (492)
Q Consensus       348 ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~~  384 (492)
                      ||++++||..+..    .|||+++|+|+|+|+++...
T Consensus       219 IP~~laYG~~g~~----gIppns~LvfeVeLl~V~~~  251 (269)
T PRK10902        219 IPPELAYGKAGVP----GIPANSTLVFDVELLDVKPA  251 (269)
T ss_pred             ECchhhCCCCCCC----CCCCCCcEEEEEEEEEeccC
Confidence            9999999998753    59999999999999999853

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.73  E-value=1.3e-17  Score=149.56  Aligned_cols=126  Identities=20%  Similarity=0.260  Sum_probs=95.7

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCC
Q 011164           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (492)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~  131 (492)
                      +++++++|+|+|++++.+|++|++|+. ..|+.|++|.++++|+||.+|.+|++|+++.|.|+|+.|||+++..      
T Consensus         2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~~------   74 (196)
T PRK10737          2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDEN------   74 (196)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH------
Confidence            468899999999999999999999986 4899999999999999999999999999999999999999998742      


Q ss_pred             CceEEEEEEEEEeeccccc---------ccccceeeeeecCcccCCCCCcceEEEEEEEEcCCCcEEeeecC
Q 011164          132 ATLQFDVELLSWTSVKDIC---------KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADG  194 (492)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~---------~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~l~~g~~~~~~~~  194 (492)
                        ++..+..-.|.....+.         .++.+..+|        +...++.|+||||||||+.++.|+-+.
T Consensus        75 --lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V--------~ev~~d~V~vD~NHPLAG~~L~F~veV  136 (196)
T PRK10737         75 --LVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEI--------TAVEDDHVVVDGNHMLAGQNLKFNVEV  136 (196)
T ss_pred             --HEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEE--------EEEcCCEEEEECCCcCCCCEEEEEEEE
Confidence              33333322221111111         111112222        333558999999999999999887643

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.58  E-value=2.5e-15  Score=131.49  Aligned_cols=86  Identities=26%  Similarity=0.354  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (492)
Q Consensus       394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~  473 (492)
                      ..+..+..+|..||.+|+.|+|..|..+|+.||..+....          .+.+..||+|+|+|.+|++.|+.||.+|++
T Consensus        90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsK  159 (271)
T KOG4234|consen   90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCSK  159 (271)
T ss_pred             HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHh
Confidence            3488999999999999999999999999999999876432          578899999999999999999999999999


Q ss_pred             HHhcCCCCccceeeee
Q 011164          474 VQQQKKFLLLPIFNIY  489 (492)
Q Consensus       474 al~~dp~n~KA~~r~~  489 (492)
                      ||+++|.+.|||-|++
T Consensus       160 aiel~pty~kAl~RRA  175 (271)
T KOG4234|consen  160 AIELNPTYEKALERRA  175 (271)
T ss_pred             hHhcCchhHHHHHHHH
Confidence            9999999999999975

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.56  E-value=2e-14  Score=125.78  Aligned_cols=72  Identities=21%  Similarity=0.372  Sum_probs=66.8

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCc
Q 011164          285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE  358 (492)
Q Consensus       285 ~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~  358 (492)
                      .+..++.|++||++++.||++||+++  ..+.|+.|.+|.+++++||+.+|.+|++|+++.|.|||+.|||...
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~--~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d   75 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTR--NNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS   75 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECC--CCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            56889999999999999999999986  3478999999999999999999999999999999999999999753

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=1.8e-15  Score=148.29  Aligned_cols=90  Identities=26%  Similarity=0.339  Sum_probs=83.2

Q ss_pred             CCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHH
Q 011164          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (492)
Q Consensus       387 ~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~  466 (492)
                      .-.++.+++++.|.++|.+||.+|++|+|.+||++|++||.+...               ....|+|||+||..+|+|++
T Consensus       103 ~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~---------------epiFYsNraAcY~~lgd~~~  167 (606)
T KOG0547|consen  103 KKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD---------------EPIFYSNRAACYESLGDWEK  167 (606)
T ss_pred             hhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC---------------CchhhhhHHHHHHHHhhHHH
Confidence            446788899999999999999999999999999999999998542               17889999999999999999


Q ss_pred             HHHHHHHHHhcCCCCccceeeeecc
Q 011164          467 AEKLCTKVQQQKKFLLLPIFNIYAR  491 (492)
Q Consensus       467 ai~~~~~al~~dp~n~KA~~r~~~~  491 (492)
                      ++++|++||+++|+++|||||++.|
T Consensus       168 Vied~TkALEl~P~Y~KAl~RRA~A  192 (606)
T KOG0547|consen  168 VIEDCTKALELNPDYVKALLRRASA  192 (606)
T ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHH
Confidence            9999999999999999999999875

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=4.3e-13  Score=116.56  Aligned_cols=72  Identities=28%  Similarity=0.409  Sum_probs=66.4

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCc
Q 011164          285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE  358 (492)
Q Consensus       285 ~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~  358 (492)
                      +...||.|++||++++.||++||+|..  ...|+.|.+|.+++++|||+||.+|.+|++..|.|||+.|||...
T Consensus         2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e--~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~   73 (174)
T COG1047           2 KIEKGDVVSLHYTLKVEDGEVVDTTDE--NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD   73 (174)
T ss_pred             cccCCCEEEEEEEEEecCCcEEEcccc--cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence            357899999999999999999998852  478999999999999999999999999999999999999999863

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.43  E-value=6e-13  Score=119.55  Aligned_cols=70  Identities=14%  Similarity=0.238  Sum_probs=65.5

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCc
Q 011164          286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE  358 (492)
Q Consensus       286 p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~  358 (492)
                      ..+++.|+++|++++.+|++||++.   ...|+.|.+|.++++|+||++|.+|.+|++..|.|||+.|||...
T Consensus         3 I~~~~vV~l~Y~l~~~dG~v~dst~---~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d   72 (196)
T PRK10737          3 VAKDLVVSLAYQVRTEDGVLVDESP---VSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (196)
T ss_pred             cCCCCEEEEEEEEEeCCCCEEEecC---CCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            5688999999999999999999884   578999999999999999999999999999999999999999864

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=1.4e-13  Score=129.46  Aligned_cols=83  Identities=28%  Similarity=0.314  Sum_probs=75.4

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .|..+|+.||.+||.++|+.|...|+++|+.-..+           ..+...||+|||+|++-+++|..||.+|++||.+
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~  148 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-----------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL  148 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-----------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            78999999999999999999999999999863222           4578999999999999999999999999999999


Q ss_pred             CCCCccceeeeecc
Q 011164          478 KKFLLLPIFNIYAR  491 (492)
Q Consensus       478 dp~n~KA~~r~~~~  491 (492)
                      +|.|.||+||=+.+
T Consensus       149 ~P~h~Ka~~R~Akc  162 (390)
T KOG0551|consen  149 KPTHLKAYIRGAKC  162 (390)
T ss_pred             CcchhhhhhhhhHH
Confidence            99999999996543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.42  E-value=1.2e-13  Score=129.08  Aligned_cols=82  Identities=26%  Similarity=0.321  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHH
Q 011164          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (492)
Q Consensus       392 ~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~  471 (492)
                      +.+....|+.+|.+||++++.++|++|+.+|++||.+               .+....+|+|||++|.+||+|..|+++|
T Consensus        74 ~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l---------------~P~nAVyycNRAAAy~~Lg~~~~AVkDc  138 (304)
T KOG0553|consen   74 PEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL---------------DPTNAVYYCNRAAAYSKLGEYEDAVKDC  138 (304)
T ss_pred             hHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------------CCCcchHHHHHHHHHHHhcchHHHHHHH
Confidence            3378899999999999999999999999999999998               4455899999999999999999999999


Q ss_pred             HHHHhcCCCCccceeee
Q 011164          472 TKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       472 ~~al~~dp~n~KA~~r~  488 (492)
                      ..||.+||++.|||-|.
T Consensus       139 e~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen  139 ESALSIDPHYSKAYGRL  155 (304)
T ss_pred             HHHHhcChHHHHHHHHH
Confidence            99999999999998875

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=1.3e-12  Score=130.24  Aligned_cols=81  Identities=33%  Similarity=0.435  Sum_probs=74.2

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      +.+.+.|++||.+|+.|+|..|+..|++||+.               .+....+|+|||+||+|+++|..|+.+|.++++
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---------------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie  420 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---------------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE  420 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---------------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            45788899999999999999999999999986               344589999999999999999999999999999


Q ss_pred             cCCCCccceeeeeccC
Q 011164          477 QKKFLLLPIFNIYARL  492 (492)
Q Consensus       477 ~dp~n~KA~~r~~~~l  492 (492)
                      +||++.|||+|+..+|
T Consensus       421 L~p~~~kgy~RKg~al  436 (539)
T KOG0548|consen  421 LDPNFIKAYLRKGAAL  436 (539)
T ss_pred             cCchHHHHHHHHHHHH
Confidence            9999999999987653

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.27  E-value=7.7e-13  Score=124.75  Aligned_cols=88  Identities=28%  Similarity=0.365  Sum_probs=78.2

Q ss_pred             CCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHH
Q 011164          389 DMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE  468 (492)
Q Consensus       389 ~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai  468 (492)
                      +.=.++.+..+.++|++||.+||+|+|.+||.||++++..               .+....+|.|||.+|+|+++|..|.
T Consensus        87 d~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~---------------~P~NpV~~~NRA~AYlk~K~FA~AE  151 (536)
T KOG4648|consen   87 DPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAV---------------YPHNPVYHINRALAYLKQKSFAQAE  151 (536)
T ss_pred             cHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhcc---------------CCCCccchhhHHHHHHHHHHHHHHH
Confidence            3345677899999999999999999999999999999987               3445788999999999999999999


Q ss_pred             HHHHHHHhcCCCCccceeeeecc
Q 011164          469 KLCTKVQQQKKFLLLPIFNIYAR  491 (492)
Q Consensus       469 ~~~~~al~~dp~n~KA~~r~~~~  491 (492)
                      .+|+.|+.+|..++|||-|+..|
T Consensus       152 ~DC~~AiaLd~~Y~KAYSRR~~A  174 (536)
T KOG4648|consen  152 EDCEAAIALDKLYVKAYSRRMQA  174 (536)
T ss_pred             HhHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999887643

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.16  E-value=4.9e-11  Score=129.21  Aligned_cols=109  Identities=24%  Similarity=0.276  Sum_probs=94.4

Q ss_pred             cCCCCccEEEEEEEeeeeecccCCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHH
Q 011164          365 VVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK  444 (492)
Q Consensus       365 ~ip~~~~l~~~v~l~~~~~~~~~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~  444 (492)
                      ..|+...+....++..+. ....|.++.+++...+..+|+.||.+|+.|+|.+|+..|++++++...             
T Consensus        94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-------------  159 (615)
T TIGR00990        94 TAPKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-------------  159 (615)
T ss_pred             CCCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-------------
Confidence            356677777777776555 456799999999999999999999999999999999999999986321             


Q ss_pred             HHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeec
Q 011164          445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYA  490 (492)
Q Consensus       445 ~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~  490 (492)
                         ..+|+|+|.||+++++|++|+.+|++||+++|++.+|++|+..
T Consensus       160 ---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~  202 (615)
T TIGR00990       160 ---PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRAN  202 (615)
T ss_pred             ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence               2469999999999999999999999999999999999998753

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=4.7e-11  Score=107.75  Aligned_cols=76  Identities=30%  Similarity=0.432  Sum_probs=70.3

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+.++|++||.+|..++|..|+.+|.+||..               .+.-+..|.|+|+||+|+++|+.+..+|.+||+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~---------------nP~~~~Y~tnralchlk~~~~~~v~~dcrralq   72 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI---------------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ   72 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhc---------------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence            46889999999999999999999999999976               556688999999999999999999999999999


Q ss_pred             cCCCCccceee
Q 011164          477 QKKFLLLPIFN  487 (492)
Q Consensus       477 ~dp~n~KA~~r  487 (492)
                      ++|+.+|+.|-
T Consensus        73 l~~N~vk~h~f   83 (284)
T KOG4642|consen   73 LDPNLVKAHYF   83 (284)
T ss_pred             cChHHHHHHHH
Confidence            99999998773

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.96  E-value=1.9e-09  Score=81.17  Aligned_cols=66  Identities=24%  Similarity=0.314  Sum_probs=60.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc-CHHHHHHHHHHHHhc
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVQQQ  477 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~-~~~~ai~~~~~al~~  477 (492)
                      |..+...|+.+++.++|.+|+..|++++++               .+....++.|+|.|+.+++ +|.+|+.++++||++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            667889999999999999999999999998               3345779999999999999 799999999999999


Q ss_pred             CC
Q 011164          478 KK  479 (492)
Q Consensus       478 dp  479 (492)
                      +|
T Consensus        68 ~P   69 (69)
T PF13414_consen   68 DP   69 (69)
T ss_dssp             ST
T ss_pred             Cc
Confidence            98

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=4.4e-10  Score=108.92  Aligned_cols=84  Identities=21%  Similarity=0.267  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (492)
Q Consensus       395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a  474 (492)
                      ..+....+|++||.+||+|+|..|.++|+.||..=..           -.+..+.||.|||++.+++++..+||.+|+.|
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-----------n~~~naklY~nra~v~~rLgrl~eaisdc~~A  313 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-----------NKKTNAKLYGNRALVNIRLGRLREAISDCNEA  313 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-----------ccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence            4678889999999999999999999999999986222           24567899999999999999999999999999


Q ss_pred             HhcCCCCccceeeee
Q 011164          475 QQQKKFLLLPIFNIY  489 (492)
Q Consensus       475 l~~dp~n~KA~~r~~  489 (492)
                      +.+|+...|||.|.+
T Consensus       314 l~iD~syikall~ra  328 (486)
T KOG0550|consen  314 LKIDSSYIKALLRRA  328 (486)
T ss_pred             hhcCHHHHHHHHHHH
Confidence            999999999998875

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=2.2e-09  Score=107.54  Aligned_cols=79  Identities=24%  Similarity=0.224  Sum_probs=73.1

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+|++||.+|..|+|..|+..|+.||.+               .+....+|+|+++||.++++|++|+.++++..+++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l---------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~   66 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIML---------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN   66 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHcc---------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            568899999999999999999999999987               44568999999999999999999999999999999


Q ss_pred             CCCccceeeeeccC
Q 011164          479 KFLLLPIFNIYARL  492 (492)
Q Consensus       479 p~n~KA~~r~~~~l  492 (492)
                      |...|+|+|+-.||
T Consensus        67 p~w~kgy~r~Gaa~   80 (539)
T KOG0548|consen   67 PDWAKGYSRKGAAL   80 (539)
T ss_pred             CchhhHHHHhHHHH
Confidence            99999999986653

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=2.3e-09  Score=97.28  Aligned_cols=116  Identities=25%  Similarity=0.378  Sum_probs=91.4

Q ss_pred             ecCCCeEEEEEEcccCcCCC--CCCCEEEEEEEEEec--CCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEE
Q 011164           34 IGNQGLKKKLVKEGEGWDTP--ENGDEVEVHYTGTLL--DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA  109 (492)
Q Consensus        34 ~~~~g~~~~il~~G~G~~~~--~~gd~V~v~Y~~~~~--dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~  109 (492)
                      ++-.||+|+|+..|+| +-|  .+|..|.+||.....  .++++|+|...|+|+.+++|.-.-++-||..|..|+++|.+
T Consensus         7 l~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva   85 (329)
T KOG0545|consen    7 LNVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVA   85 (329)
T ss_pred             ccchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence            4567999999999999 554  599999999998776  46799999999999999999999999999999999999999


Q ss_pred             EEEecCCc--------------ccCC-----------------------CCCCCCCCCCCceEEEEEEEEEeeccccc
Q 011164          110 VFTIPPEL--------------AYGE-----------------------SGSPPTIPPNATLQFDVELLSWTSVKDIC  150 (492)
Q Consensus       110 ~~~i~~~~--------------ayg~-----------------------~~~~~~i~~~~~l~~~vel~~~~~~~~~~  150 (492)
                      .|+|.-..              +-|.                       .+........++|+|.++|+.+..+.+..
T Consensus        86 qF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq  163 (329)
T KOG0545|consen   86 QFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQ  163 (329)
T ss_pred             HhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhc
Confidence            98876421              1111                       11111233458899999999987765543

>TIGR00115 tig trigger factor

Probab=98.72  E-value=6.2e-08  Score=99.55  Aligned_cols=101  Identities=23%  Similarity=0.402  Sum_probs=86.8

Q ss_pred             CCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCC
Q 011164           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (492)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~  130 (492)
                      ..++.||.|.++|+++. +|+.++++..  .++.|.+|.+.+++||+.+|.||++|+++.|.+++...|+..+.     +
T Consensus       145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~  216 (408)
T TIGR00115       145 RAAEKGDRVTIDFEGFI-DGEAFEGGKA--ENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----A  216 (408)
T ss_pred             cccCCCCEEEEEEEEEE-CCEECcCCCC--CCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----C
Confidence            35789999999999976 8888887653  78999999999999999999999999999999998888887654     5


Q ss_pred             CCceEEEEEEEEEeecccccccccceeee
Q 011164          131 NATLQFDVELLSWTSVKDICKDGGIIKKI  159 (492)
Q Consensus       131 ~~~l~~~vel~~~~~~~~~~~d~~~~k~i  159 (492)
                      |.++.|.|++.++.....+..+..+++.+
T Consensus       217 gk~~~f~v~i~~I~~~~~peldDefak~~  245 (408)
T TIGR00115       217 GKEATFKVTVKEVKEKELPELDDEFAKEL  245 (408)
T ss_pred             CCeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence            79999999999998776666666666654

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.69  E-value=4.9e-09  Score=104.24  Aligned_cols=79  Identities=18%  Similarity=0.139  Sum_probs=72.9

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..|..+|.++|++|+.+.|..|+..|+|||++               ++-.+..+.|||++++|.++|..|+.+|.+|++
T Consensus         2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~l---------------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie   66 (476)
T KOG0376|consen    2 SSAEELKNEANEALKDKVFDVAVDLYSKAIEL---------------DPNCAIYFANRALAHLKVESFGGALHDALKAIE   66 (476)
T ss_pred             chhhhhhhHHhhhcccchHHHHHHHHHHHHhc---------------CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence            35788999999999999999999999999987               444578899999999999999999999999999


Q ss_pred             cCCCCccceeeeec
Q 011164          477 QKKFLLLPIFNIYA  490 (492)
Q Consensus       477 ~dp~n~KA~~r~~~  490 (492)
                      ++|.+.|||||+..
T Consensus        67 ~dP~~~K~Y~rrg~   80 (476)
T KOG0376|consen   67 LDPTYIKAYVRRGT   80 (476)
T ss_pred             cCchhhheeeeccH
Confidence            99999999999954

>TIGR00115 tig trigger factor

Probab=98.67  E-value=2.5e-07  Score=95.12  Aligned_cols=91  Identities=16%  Similarity=0.322  Sum_probs=77.4

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCcccccc
Q 011164          284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQEL  363 (492)
Q Consensus       284 ~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~  363 (492)
                      +.+..||.|+++|++.. +|..|+++    ...++.|.+|.+.+++||+.+|.||++|+++.|.++....|+...     
T Consensus       145 ~~~~~gD~V~v~~~~~~-dg~~~~~~----~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~-----  214 (408)
T TIGR00115       145 RAAEKGDRVTIDFEGFI-DGEAFEGG----KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE-----  214 (408)
T ss_pred             cccCCCCEEEEEEEEEE-CCEECcCC----CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCccc-----
Confidence            35788999999999976 88888654    457899999999999999999999999999999999887887543     


Q ss_pred             ccCCCCccEEEEEEEeeeeecccC
Q 011164          364 AVVPPNSTVHYEVELVSFEKEKES  387 (492)
Q Consensus       364 ~~ip~~~~l~~~v~l~~~~~~~~~  387 (492)
                         -+|.++.|.|+|.++.+...+
T Consensus       215 ---~~gk~~~f~v~i~~I~~~~~p  235 (408)
T TIGR00115       215 ---LAGKEATFKVTVKEVKEKELP  235 (408)
T ss_pred             ---CCCCeEEEEEEEEEeccCCCC
Confidence               258899999999999965433

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.60  E-value=2.9e-08  Score=99.81  Aligned_cols=77  Identities=16%  Similarity=0.163  Sum_probs=67.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..++.+|+.+|.+++|.+|+..|++||+.-.               ....+|.|+|.|++++++|++|+.+|++||+++
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P---------------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~   66 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDP---------------NNAELYADRAQANIKLGNFTEAVADANKAIELD   66 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45688999999999999999999999998732               235688999999999999999999999999999


Q ss_pred             CCCccceeeeec
Q 011164          479 KFLLLPIFNIYA  490 (492)
Q Consensus       479 p~n~KA~~r~~~  490 (492)
                      |++..++||+..
T Consensus        67 P~~~~a~~~lg~   78 (356)
T PLN03088         67 PSLAKAYLRKGT   78 (356)
T ss_pred             cCCHHHHHHHHH
Confidence            999999888654

>PRK01490 tig trigger factor; Provisional

Probab=98.60  E-value=2.1e-07  Score=96.36  Aligned_cols=100  Identities=25%  Similarity=0.449  Sum_probs=84.9

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCC
Q 011164           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (492)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~  131 (492)
                      .++.||.|.++|+++. +|..++++..  .++.|.+|.+.+++||+.+|.||++|+++.|.++....|+....     +|
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----ag  228 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----AG  228 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCCCC--CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----CC
Confidence            4789999999999997 8888887654  68999999999999999999999999999999998888876553     57


Q ss_pred             CceEEEEEEEEEeecccccccccceeee
Q 011164          132 ATLQFDVELLSWTSVKDICKDGGIIKKI  159 (492)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i  159 (492)
                      ..+.|.|++.++.....+..+..+++.+
T Consensus       229 k~~~f~v~v~~V~~~~~pel~Defak~~  256 (435)
T PRK01490        229 KEATFKVTVKEVKEKELPELDDEFAKKL  256 (435)
T ss_pred             CeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence            8999999999998766666666666543

>PRK01490 tig trigger factor; Provisional

Probab=98.57  E-value=7e-07  Score=92.53  Aligned_cols=90  Identities=14%  Similarity=0.343  Sum_probs=76.1

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCcccccc
Q 011164          284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQEL  363 (492)
Q Consensus       284 ~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~  363 (492)
                      ..+..||.|+++|.+.. +|+.|+.+    ...++.|.+|.+.+++||+.+|.||++|+++.|.++....|+....    
T Consensus       156 ~~~~~gD~V~vd~~~~~-~g~~~~~~----~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l----  226 (435)
T PRK01490        156 RPAENGDRVTIDFVGSI-DGEEFEGG----KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL----  226 (435)
T ss_pred             ccCCCCCEEEEEEEEEE-CCEECcCC----CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC----
Confidence            34799999999999998 88888653    4568899999999999999999999999999999987777765332    


Q ss_pred             ccCCCCccEEEEEEEeeeeeccc
Q 011164          364 AVVPPNSTVHYEVELVSFEKEKE  386 (492)
Q Consensus       364 ~~ip~~~~l~~~v~l~~~~~~~~  386 (492)
                          +|..+.|.|+|.++.+...
T Consensus       227 ----agk~~~f~v~v~~V~~~~~  245 (435)
T PRK01490        227 ----AGKEATFKVTVKEVKEKEL  245 (435)
T ss_pred             ----CCCeEEEEEEEEEeccCCC
Confidence                4788999999999996543

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=9.7e-08  Score=97.36  Aligned_cols=140  Identities=23%  Similarity=0.373  Sum_probs=105.7

Q ss_pred             CCCCcCCCCCCCCcccccccee---eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEc
Q 011164           11 NEMDADMDLPDDAPMMKVGEEK---EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTL   87 (492)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~l   87 (492)
                      -+.++....+...|..+..+..   .|..-.-...++..-++ . ++.||.|+|+|.++. ||..|.+...  .-+.|.|
T Consensus       115 v~l~d~~~i~v~~~~~ev~d~dvd~~L~~l~~~~a~~~~~e~-~-a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~l  189 (441)
T COG0544         115 VELGDYKGIEVEKPVVEVTDEDVDEELEKLRKRFATLEPVEG-A-AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLEL  189 (441)
T ss_pred             eecCccccceeecCCcccCHHHHHHHHHHHHHhcCccccccc-c-cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEE
Confidence            3445666666666666655444   12222333444444444 3 899999999999954 8888887654  5689999


Q ss_pred             CCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEeecccccccccceeeee
Q 011164           88 GQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKIL  160 (492)
Q Consensus        88 g~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~  160 (492)
                      |+++++|||+.+|.||++|++..|.+.....|.....     +|.+..|.|.+..+.....+..|..+.+.+.
T Consensus       190 Gs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aGK~a~F~V~vkeVk~~elpEldDEfAk~~~  257 (441)
T COG0544         190 GSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AGKEATFKVKVKEVKKRELPELDDEFAKKLG  257 (441)
T ss_pred             cCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CCCceEEEEEEEEEeecCCCCCCHHHHHhcC
Confidence            9999999999999999999999998888778877664     5789999999999998888877777777653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.46  E-value=3.6e-07  Score=67.77  Aligned_cols=64  Identities=14%  Similarity=0.120  Sum_probs=56.7

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      ..|..+++.|+|.+|+..|+++++.               .+....++.+++.|+.++|+|++|+..+.++++++|+|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQ---------------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCC---------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5789999999999999999999986               334688999999999999999999999999999999874

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=4.2e-08  Score=93.94  Aligned_cols=99  Identities=23%  Similarity=0.289  Sum_probs=84.7

Q ss_pred             ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh---HH-HHHHHHHHHHhHhHHHHHHHHhcCHHH
Q 011164          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD---EE-KKQAKALKVACNLNNAACKLKLKDYKQ  466 (492)
Q Consensus       391 ~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~---~~-~~~~~~~~~~l~~N~a~~~lk~~~~~~  466 (492)
                      +....+..+..+|+.||..|++++|..|..+|.++++++...+....   ++ ...+...+..++.|+|+|-+|++.|..
T Consensus       214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~  293 (372)
T KOG0546|consen  214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGG  293 (372)
T ss_pred             ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCc
Confidence            34466788889999999999999999999999999999985222211   12 345788899999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCccceeeee
Q 011164          467 AEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       467 ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      |+..|..+++.++++.||+||.-
T Consensus       294 a~~~~~~~~~~~~s~tka~~Rr~  316 (372)
T KOG0546|consen  294 ARFRTNEALRDERSKTKAHYRRG  316 (372)
T ss_pred             ceeccccccccChhhCcHHHHHH
Confidence            99999999999999999999974

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=4.4e-06  Score=85.36  Aligned_cols=88  Identities=17%  Similarity=0.332  Sum_probs=70.9

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCcccccccc
Q 011164          286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAV  365 (492)
Q Consensus       286 p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~~~  365 (492)
                      ...||+|+|+|.|.. ||..|..    .....+.|.||.++++|||+.+|.||+.|+...|.+.-...|.....      
T Consensus       158 a~~gD~v~IDf~g~i-Dg~~feg----g~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------  226 (441)
T COG0544         158 AENGDRVTIDFEGSV-DGEEFEG----GKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------  226 (441)
T ss_pred             cccCCEEEEEEEEEE-cCeeccC----ccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh------
Confidence            899999999999966 8888854    35677999999999999999999999999999865544344443322      


Q ss_pred             CCCCccEEEEEEEeeeeeccc
Q 011164          366 VPPNSTVHYEVELVSFEKEKE  386 (492)
Q Consensus       366 ip~~~~l~~~v~l~~~~~~~~  386 (492)
                        +|....|.|+|..|.....
T Consensus       227 --aGK~a~F~V~vkeVk~~el  245 (441)
T COG0544         227 --AGKEATFKVKVKEVKKREL  245 (441)
T ss_pred             --CCCceEEEEEEEEEeecCC
Confidence              3677999999999996443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.31  E-value=4.2e-06  Score=64.39  Aligned_cols=74  Identities=22%  Similarity=0.227  Sum_probs=61.4

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+...|..++..|+|++|+..|++++++......        -......++.|+|.|+.++|++++|+..+++|++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            35677889999999999999999999999998433221        1344588999999999999999999999999998


Q ss_pred             cC
Q 011164          477 QK  478 (492)
Q Consensus       477 ~d  478 (492)
                      +.
T Consensus        75 i~   76 (78)
T PF13424_consen   75 IF   76 (78)
T ss_dssp             HH
T ss_pred             hh
Confidence            63

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.19  E-value=5.2e-06  Score=71.86  Aligned_cols=76  Identities=13%  Similarity=0.091  Sum_probs=68.9

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      ..+.+...|..+|..|+|++|.+.|+-...+               +.....-+.||++|+-.+++|.+||..+.+++.+
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~---------------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L   98 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY---------------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI   98 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3457788999999999999999999999987               5667889999999999999999999999999999


Q ss_pred             CCCCccceeee
Q 011164          478 KKFLLLPIFNI  488 (492)
Q Consensus       478 dp~n~KA~~r~  488 (492)
                      +|+|+.++|+-
T Consensus        99 ~~ddp~~~~~a  109 (157)
T PRK15363         99 KIDAPQAPWAA  109 (157)
T ss_pred             CCCCchHHHHH
Confidence            99999887753

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.18  E-value=1.8e-06  Score=75.23  Aligned_cols=72  Identities=17%  Similarity=0.216  Sum_probs=46.0

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      +...|..+++.|+|.+|+..|++++..               .+.....+.|+|.++.++|+|++|+..++++++++|++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~   91 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMA---------------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH   91 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            345688889999999999999998876               22234455555555555555555555555555555555


Q ss_pred             ccceeee
Q 011164          482 LLPIFNI  488 (492)
Q Consensus       482 ~KA~~r~  488 (492)
                      ..++++.
T Consensus        92 ~~a~~~l   98 (144)
T PRK15359         92 PEPVYQT   98 (144)
T ss_pred             cHHHHHH
Confidence            5555543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.15  E-value=2.5e-06  Score=74.24  Aligned_cols=75  Identities=11%  Similarity=-0.067  Sum_probs=66.1

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      ...+...|..+.+.|+|.+|+..|++++..               .+-....+.|+|.|+.++|++++|+..+.++|+++
T Consensus        58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l---------------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         58 WRAHIALAGTWMMLKEYTTAINFYGHALML---------------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            456678999999999999999999999986               22347889999999999999999999999999999


Q ss_pred             CCCccceeee
Q 011164          479 KFLLLPIFNI  488 (492)
Q Consensus       479 p~n~KA~~r~  488 (492)
                      |+++.++..+
T Consensus       123 p~~~~~~~~~  132 (144)
T PRK15359        123 YADASWSEIR  132 (144)
T ss_pred             CCChHHHHHH
Confidence            9998776544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=3e-06  Score=82.78  Aligned_cols=83  Identities=22%  Similarity=0.225  Sum_probs=75.0

Q ss_pred             ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHH
Q 011164          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL  470 (492)
Q Consensus       391 ~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~  470 (492)
                      ..++....|+..|++||.+|++++|..|+..|+.|+++...               .+..|.|+|+|++.+++|++|.-+
T Consensus        41 ~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd---------------~a~yy~nRAa~~m~~~~~~~a~~d  105 (486)
T KOG0550|consen   41 FSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPD---------------NASYYSNRAATLMMLGRFEEALGD  105 (486)
T ss_pred             ccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCcc---------------chhhhchhHHHHHHHHhHhhcccc
Confidence            44567888999999999999999999999999999998542               388899999999999999999999


Q ss_pred             HHHHHhcCCCCccceeee
Q 011164          471 CTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       471 ~~~al~~dp~n~KA~~r~  488 (492)
                      +.+.++++|...|+..|.
T Consensus       106 ar~~~r~kd~~~k~~~r~  123 (486)
T KOG0550|consen  106 ARQSVRLKDGFSKGQLRE  123 (486)
T ss_pred             hhhheecCCCccccccch
Confidence            999999999999987664

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.10  E-value=7.3e-06  Score=62.10  Aligned_cols=63  Identities=16%  Similarity=0.147  Sum_probs=56.8

Q ss_pred             hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164          407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP  484 (492)
Q Consensus       407 n~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA  484 (492)
                      +.++++++|..|+..+++++..               .+....++.++|.|+.++|+|.+|+.+++++++..|++..+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~---------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALEL---------------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh---------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            5678999999999999999987               34468899999999999999999999999999999988654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.08  E-value=4.8e-06  Score=52.88  Aligned_cols=33  Identities=15%  Similarity=0.146  Sum_probs=30.3

Q ss_pred             HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      .+|+|+|.||+++++|.+|+.+|++||+++|+|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            578999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.07  E-value=2.8e-06  Score=63.41  Aligned_cols=59  Identities=31%  Similarity=0.337  Sum_probs=51.7

Q ss_pred             HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       409 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      ++++|+|.+|+..|++++...               +....++.++|.|++++|+|++|...+.+++..+|++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~---------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~   59 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRN---------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP   59 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHT---------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred             ChhccCHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence            578999999999999999873               33477888999999999999999999999999999874

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.07  E-value=1.9e-06  Score=86.31  Aligned_cols=85  Identities=24%  Similarity=0.180  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc---CHHHHHH
Q 011164          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEK  469 (492)
Q Consensus       393 ~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~---~~~~ai~  469 (492)
                      .+..+.++..|++||..|-.+.+..|+..|.+++.+               -+....||.|+|++++|.+   +-..|++
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~---------------~~~~~~~l~nraa~lmkRkW~~d~~~Alr  432 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY---------------VPDAIYLLENRAAALMKRKWRGDSYLALR  432 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh---------------ccchhHHHHhHHHHHHhhhccccHHHHHH
Confidence            466788999999999999999999999999999988               4567899999999999976   6788999


Q ss_pred             HHHHHHhcCCCCccceeeeeccC
Q 011164          470 LCTKVQQQKKFLLLPIFNIYARL  492 (492)
Q Consensus       470 ~~~~al~~dp~n~KA~~r~~~~l  492 (492)
                      +|..||++||...||+||.+-+|
T Consensus       433 Dch~Alrln~s~~kah~~la~aL  455 (758)
T KOG1310|consen  433 DCHVALRLNPSIQKAHFRLARAL  455 (758)
T ss_pred             hHHhhccCChHHHHHHHHHHHHH
Confidence            99999999999999999987554

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.87  E-value=3.3e-06  Score=80.81  Aligned_cols=80  Identities=21%  Similarity=0.192  Sum_probs=72.8

Q ss_pred             ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHH
Q 011164          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL  470 (492)
Q Consensus       391 ~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~  470 (492)
                      ..++.++.|+..|-++.+++..|.+..|+..|++|+.+               ..-...+|.+++.+++|++++..||++
T Consensus       106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l---------------np~~a~l~~kr~sv~lkl~kp~~airD  170 (377)
T KOG1308|consen  106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIEL---------------NPPLAILYAKRASVFLKLKKPNAAIRD  170 (377)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcchhhhhccccccccc---------------CCchhhhcccccceeeeccCCchhhhh
Confidence            45678999999999999999999999999999999986               444588999999999999999999999


Q ss_pred             HHHHHhcCCCCccce
Q 011164          471 CTKVQQQKKFLLLPI  485 (492)
Q Consensus       471 ~~~al~~dp~n~KA~  485 (492)
                      |+.|++++|+..|.+
T Consensus       171 ~d~A~ein~Dsa~~y  185 (377)
T KOG1308|consen  171 CDFAIEINPDSAKGY  185 (377)
T ss_pred             hhhhhccCccccccc
Confidence            999999999887754

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.81  E-value=3.1e-05  Score=66.28  Aligned_cols=85  Identities=16%  Similarity=0.123  Sum_probs=47.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC---------hHHH----------HHHHHHHHHhHhHHHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG---------DEEK----------KQAKALKVACNLNNAACKL  459 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~---------~~~~----------~~~~~~~~~l~~N~a~~~l  459 (492)
                      +......|..+++.++|.+|+..|++++..-.......         ..+.          ....+.....+.|+|.|+.
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   96 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            34566788888888888888888888876522110000         0000          0011122344556666666


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCcc
Q 011164          460 KLKDYKQAEKLCTKVQQQKKFLLL  483 (492)
Q Consensus       460 k~~~~~~ai~~~~~al~~dp~n~K  483 (492)
                      +++++++|+..++++++++|++.+
T Consensus        97 ~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        97 ALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             HcCCHHHHHHHHHHHHHhccccch
Confidence            666666666666666666665543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.73  E-value=6.5e-05  Score=47.45  Aligned_cols=33  Identities=12%  Similarity=0.044  Sum_probs=30.1

Q ss_pred             HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      ..+.++|.+++++++|++|+.+++++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            468899999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.72  E-value=6.4e-05  Score=67.51  Aligned_cols=83  Identities=19%  Similarity=0.089  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (492)
Q Consensus       394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~  473 (492)
                      .....+..+...|..+++.|+|.+|+..|+++++.....            .....++.|+|.|+.++++|++|+..+.+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~   97 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP------------NDRSYILYNMGIIYASNGEHDKALEYYHQ   97 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc------------chHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            345667778899999999999999999999999863211            01256889999999999999999999999


Q ss_pred             HHhcCCCCccceeee
Q 011164          474 VQQQKKFLLLPIFNI  488 (492)
Q Consensus       474 al~~dp~n~KA~~r~  488 (492)
                      ++.++|++..+++.+
T Consensus        98 al~~~p~~~~~~~~l  112 (172)
T PRK02603         98 ALELNPKQPSALNNI  112 (172)
T ss_pred             HHHhCcccHHHHHHH
Confidence            999999988776543

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.70  E-value=4e-05  Score=75.27  Aligned_cols=73  Identities=12%  Similarity=0.006  Sum_probs=41.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+-.+|..+.+.|++.+|+..|+++++.-..               ...+|+|+|.++.++++|++|+..++++|+++
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~  128 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPD---------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD  128 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            445667788888888888888888888875221               13344444444444444444444444444444


Q ss_pred             CCCcccee
Q 011164          479 KFLLLPIF  486 (492)
Q Consensus       479 p~n~KA~~  486 (492)
                      |++..+++
T Consensus       129 P~~~~a~~  136 (296)
T PRK11189        129 PTYNYAYL  136 (296)
T ss_pred             CCCHHHHH
Confidence            44444433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.67  E-value=8.1e-05  Score=74.91  Aligned_cols=71  Identities=20%  Similarity=0.256  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (492)
Q Consensus       395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a  474 (492)
                      ....+..+-..|+.+|+.|+|++|+..|++||.+-..            ......+|+|+|.||.+++++++|+.++.+|
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd------------~aeA~~A~yNLAcaya~LGr~dEAla~LrrA  138 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN------------PDEAQAAYYNKACCHAYREEGKKAADCLRTA  138 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3455677888999999999999999999999987322            1112356899999999999999999999999


Q ss_pred             Hhc
Q 011164          475 QQQ  477 (492)
Q Consensus       475 l~~  477 (492)
                      |++
T Consensus       139 Lel  141 (453)
T PLN03098        139 LRD  141 (453)
T ss_pred             HHh
Confidence            998

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.61  E-value=0.00017  Score=64.43  Aligned_cols=81  Identities=16%  Similarity=0.072  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (492)
Q Consensus       395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a  474 (492)
                      ....+..+...|..++..++|.+|+..|++++.....            ......++.|+|.++.+++++++|+..|.+|
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A   98 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQA   98 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3446777888899999999999999999999986321            1123458999999999999999999999999


Q ss_pred             HhcCCCCccceee
Q 011164          475 QQQKKFLLLPIFN  487 (492)
Q Consensus       475 l~~dp~n~KA~~r  487 (492)
                      +.++|.+..++++
T Consensus        99 l~~~~~~~~~~~~  111 (168)
T CHL00033         99 LERNPFLPQALNN  111 (168)
T ss_pred             HHhCcCcHHHHHH
Confidence            9999988766544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.58  E-value=0.00016  Score=72.95  Aligned_cols=72  Identities=15%  Similarity=0.106  Sum_probs=63.0

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+..+|..+++.|+|.+|+..+++|+++               .+....+|.++|.+++++++|.+|+.+++++++++|
T Consensus        37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---------------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  101 (356)
T PLN03088         37 ELYADRAQANIKLGNFTEAVADANKAIEL---------------DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAP  101 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence            45668899999999999999999999987               233467899999999999999999999999999999


Q ss_pred             CCcccee
Q 011164          480 FLLLPIF  486 (492)
Q Consensus       480 ~n~KA~~  486 (492)
                      ++..+..
T Consensus       102 ~~~~~~~  108 (356)
T PLN03088        102 GDSRFTK  108 (356)
T ss_pred             CCHHHHH
Confidence            9876543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.51  E-value=0.00044  Score=65.71  Aligned_cols=73  Identities=10%  Similarity=0.030  Sum_probs=62.3

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+-..|..++++|+|.+|+..|++.+.....            .+......+++|.+|+++++|.+|+..+++.++.+|
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~------------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P  100 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPF------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP  100 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence            34567889999999999999999999986443            234556678999999999999999999999999999


Q ss_pred             CCccc
Q 011164          480 FLLLP  484 (492)
Q Consensus       480 ~n~KA  484 (492)
                      +|+++
T Consensus       101 ~~~~~  105 (243)
T PRK10866        101 THPNI  105 (243)
T ss_pred             CCCch
Confidence            99864

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.44  E-value=0.00021  Score=55.34  Aligned_cols=72  Identities=26%  Similarity=0.272  Sum_probs=58.0

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      +...|..++..+++.+|+..++++++....               ...++.++|.|+...+++++|+..+++++.+.|.+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPD---------------NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            456788889999999999999999876321               12678889999999999999999999999998887


Q ss_pred             ccceeee
Q 011164          482 LLPIFNI  488 (492)
Q Consensus       482 ~KA~~r~  488 (492)
                      ..+++++
T Consensus        68 ~~~~~~~   74 (100)
T cd00189          68 AKAYYNL   74 (100)
T ss_pred             hhHHHHH
Confidence            7555443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.43  E-value=0.00033  Score=59.82  Aligned_cols=39  Identities=26%  Similarity=0.196  Sum_probs=19.5

Q ss_pred             HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcccee
Q 011164          448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIF  486 (492)
Q Consensus       448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~  486 (492)
                      ..++.|+|.|++++++|.+|+..+++++.++|.+...+|
T Consensus        51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~   89 (135)
T TIGR02552        51 SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF   89 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            344445555555555555555555555555555444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.43  E-value=0.00018  Score=50.50  Aligned_cols=37  Identities=19%  Similarity=0.250  Sum_probs=31.7

Q ss_pred             HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164          449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI  485 (492)
Q Consensus       449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~  485 (492)
                      .+++.+|.++.|+++|.+|.++|+.+|+++|+|..|.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            3677899999999999999999999999999998763

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.41  E-value=0.00069  Score=56.24  Aligned_cols=74  Identities=16%  Similarity=0.058  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHH
Q 011164          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (492)
Q Consensus       393 ~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~  472 (492)
                      ...++...++--+|-.+-..|+...|+++|.++|.++               +.+.++|+|+|.++--.++-++|+++.+
T Consensus        37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~---------------P~raSayNNRAQa~RLq~~~e~ALdDLn  101 (175)
T KOG4555|consen   37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLA---------------PERASAYNNRAQALRLQGDDEEALDDLN  101 (175)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhc---------------ccchHhhccHHHHHHHcCChHHHHHHHH
Confidence            3567788888889999999999999999999999884               3468999999999999999999999999


Q ss_pred             HHHhcCCCC
Q 011164          473 KVQQQKKFL  481 (492)
Q Consensus       473 ~al~~dp~n  481 (492)
                      +||++-..-
T Consensus       102 ~AleLag~~  110 (175)
T KOG4555|consen  102 KALELAGDQ  110 (175)
T ss_pred             HHHHhcCcc
Confidence            999996543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.40  E-value=0.00019  Score=73.72  Aligned_cols=48  Identities=10%  Similarity=-0.079  Sum_probs=42.6

Q ss_pred             HHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeecc
Q 011164          444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYAR  491 (492)
Q Consensus       444 ~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~~  491 (492)
                      ++....+++|+|..|--.|+-.+||..+..||.++|+.+.|+-+.+..
T Consensus       452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~  499 (966)
T KOG4626|consen  452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC  499 (966)
T ss_pred             CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence            667788999999999999999999999999999999999998776543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.38  E-value=0.00054  Score=64.69  Aligned_cols=74  Identities=18%  Similarity=0.164  Sum_probs=63.5

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..+++.|+|..|+..|++++.....            .......++++|.|++++++|++|+..++++++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~   99 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF------------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL   99 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            3556788999999999999999999999886432            1234567899999999999999999999999999


Q ss_pred             CCCCcc
Q 011164          478 KKFLLL  483 (492)
Q Consensus       478 dp~n~K  483 (492)
                      +|++..
T Consensus       100 ~p~~~~  105 (235)
T TIGR03302       100 HPNHPD  105 (235)
T ss_pred             CcCCCc
Confidence            999887

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.35  E-value=0.00023  Score=65.50  Aligned_cols=84  Identities=18%  Similarity=0.130  Sum_probs=56.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC---------------CC-ChHHH------HHHHHHHHHhHhHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---------------SF-GDEEK------KQAKALKVACNLNNAA  456 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~---------------~~-~~~~~------~~~~~~~~~l~~N~a~  456 (492)
                      +..+...|..+...++|..|+..|++|+++-....               .. .++..      -+.++-...+++|+|.
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~  152 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS  152 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence            44567788889999999999999999998643210               00 11111      1223345567777777


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          457 CKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       457 ~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      +++++|+|++|+.+++++|+++|.+.
T Consensus       153 ~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        153 DAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            78888888888888888777777543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.34  E-value=0.00057  Score=58.30  Aligned_cols=75  Identities=15%  Similarity=0.128  Sum_probs=62.1

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+-..|...++.|+|..|+..++....-...            .+....+.++++-+|++.++|.+|+..+++-++++|
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP   78 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPF------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP   78 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            35667888999999999999998887765433            233456778999999999999999999999999999


Q ss_pred             CCcccee
Q 011164          480 FLLLPIF  486 (492)
Q Consensus       480 ~n~KA~~  486 (492)
                      .|+++=|
T Consensus        79 ~hp~vdY   85 (142)
T PF13512_consen   79 THPNVDY   85 (142)
T ss_pred             CCCCccH
Confidence            9998543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.30  E-value=0.00035  Score=71.91  Aligned_cols=86  Identities=15%  Similarity=0.084  Sum_probs=57.7

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC--------------CChH-----HHHHHHHHHHHhHhHHHHHHHHhc
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS--------------FGDE-----EKKQAKALKVACNLNNAACKLKLK  462 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~--------------~~~~-----~~~~~~~~~~~l~~N~a~~~lk~~  462 (492)
                      +-..||.+-..|+..+|.++|.+||++...-.+              +.+.     ..-++.+.....++|+|..|-+++
T Consensus       323 y~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg  402 (966)
T KOG4626|consen  323 YNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQG  402 (966)
T ss_pred             HhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcc
Confidence            334455555557777777777777776532110              0000     001224456778999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCccceee
Q 011164          463 DYKQAEKLCTKVQQQKKFLLLPIFN  487 (492)
Q Consensus       463 ~~~~ai~~~~~al~~dp~n~KA~~r  487 (492)
                      ++++|+.++++||.++|....||-+
T Consensus       403 nl~~Ai~~YkealrI~P~fAda~~N  427 (966)
T KOG4626|consen  403 NLDDAIMCYKEALRIKPTFADALSN  427 (966)
T ss_pred             cHHHHHHHHHHHHhcCchHHHHHHh
Confidence            9999999999999999988877654

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.29  E-value=0.00055  Score=67.19  Aligned_cols=69  Identities=16%  Similarity=0.077  Sum_probs=61.1

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+...|+|..|+..|.+++++               .+.....+.|++.++...++|++|+.+++++++++
T Consensus        98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~  162 (296)
T PRK11189         98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL---------------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD  162 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            456678899999999999999999999986               22236688999999999999999999999999999


Q ss_pred             CCCc
Q 011164          479 KFLL  482 (492)
Q Consensus       479 p~n~  482 (492)
                      |++.
T Consensus       163 P~~~  166 (296)
T PRK11189        163 PNDP  166 (296)
T ss_pred             CCCH
Confidence            9886

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.23  E-value=0.0013  Score=54.31  Aligned_cols=34  Identities=15%  Similarity=-0.008  Sum_probs=20.8

Q ss_pred             HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      .++.++|.|+.+++++.+|+..++++++..|++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence            3455666666666666666666666666666553

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.21  E-value=0.00013  Score=54.50  Aligned_cols=43  Identities=14%  Similarity=0.068  Sum_probs=39.7

Q ss_pred             HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeec
Q 011164          448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYA  490 (492)
Q Consensus       448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~  490 (492)
                      +..+.++|.+++++++|++|+.+++++|+++|++..+++++..
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~   45 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGL   45 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            5678999999999999999999999999999999999988754

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.14  E-value=0.0015  Score=60.35  Aligned_cols=73  Identities=18%  Similarity=0.118  Sum_probs=59.1

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+-..|..+|++|+|.+|+..|++.+......            +....+...+|.|+++.++|..|+..+++.++..
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s------------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS------------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            5677889999999999999999999999875442            2345667899999999999999999999999999


Q ss_pred             CCCcc
Q 011164          479 KFLLL  483 (492)
Q Consensus       479 p~n~K  483 (492)
                      |++.+
T Consensus        73 P~~~~   77 (203)
T PF13525_consen   73 PNSPK   77 (203)
T ss_dssp             TT-TT
T ss_pred             CCCcc
Confidence            99876

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.14  E-value=0.0012  Score=54.54  Aligned_cols=71  Identities=15%  Similarity=0.092  Sum_probs=59.9

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+-..|..++++|+|.+|+..|.+++.....            ......++.+++.++++.++|..|+..+.+++..+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p   70 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK------------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP   70 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence            35667899999999999999999999986332            122356788999999999999999999999999999


Q ss_pred             CCc
Q 011164          480 FLL  482 (492)
Q Consensus       480 ~n~  482 (492)
                      ++.
T Consensus        71 ~~~   73 (119)
T TIGR02795        71 KSP   73 (119)
T ss_pred             CCC
Confidence            864

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.10  E-value=0.00039  Score=54.22  Aligned_cols=61  Identities=25%  Similarity=0.246  Sum_probs=48.2

Q ss_pred             cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcccee
Q 011164          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIF  486 (492)
Q Consensus       412 ~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~  486 (492)
                      +++|+.|+..|.+++..-..            .. ....+.++|.|++++++|++|+..+++ ++.++.+....|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~------------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~   62 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT------------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY   62 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG------------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCC------------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence            68999999999999986332            11 455778899999999999999999999 888887765544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.09  E-value=0.0013  Score=62.48  Aligned_cols=64  Identities=19%  Similarity=0.118  Sum_probs=53.4

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      .++-.+.+.|.|..|++--++||.+               ++....+|.-|+.+|+-+|+|.+|++.+.+||++||+|.
T Consensus       120 NRAAAy~~Lg~~~~AVkDce~Al~i---------------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  120 NRAAAYSKLGEYEDAVKDCESALSI---------------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhc---------------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence            4455555666777777766666665               778899999999999999999999999999999999986

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.03  E-value=0.002  Score=50.17  Aligned_cols=58  Identities=28%  Similarity=0.328  Sum_probs=45.3

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a  474 (492)
                      -+...|..+|+.|+|.+|+..+++ ++.               ......++.-+|.|++++++|++|+....++
T Consensus        27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~---------------~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   27 YLYNLAQCYFQQGKYEEAIELLQK-LKL---------------DPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHC-HTH---------------HHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH-hCC---------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            344579999999999999999998 543               2223555566799999999999999998775

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.02  E-value=0.00061  Score=45.97  Aligned_cols=41  Identities=17%  Similarity=-0.031  Sum_probs=37.2

Q ss_pred             HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      .++.++|.+|..+|++++|+..++++|+.+|+|..++++..
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            36789999999999999999999999999999999887653

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.01  E-value=0.0011  Score=41.72  Aligned_cols=33  Identities=18%  Similarity=0.085  Sum_probs=30.2

Q ss_pred             HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      .+|.++|.++.+++++++|+.++.++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            468899999999999999999999999999965

...

>PRK15331 chaperone protein SicA; Provisional

Probab=96.98  E-value=0.003  Score=55.18  Aligned_cols=75  Identities=15%  Similarity=0.122  Sum_probs=63.1

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      ..+.+...|-.+|.+|+|.+|...|+-...+               +......+..||+|+..+++|++|+..+..|..+
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~---------------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l  100 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY---------------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL  100 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4557778899999999999999999766654               2233556889999999999999999999999999


Q ss_pred             CCCCccceee
Q 011164          478 KKFLLLPIFN  487 (492)
Q Consensus       478 dp~n~KA~~r  487 (492)
                      +++++-..|+
T Consensus       101 ~~~dp~p~f~  110 (165)
T PRK15331        101 LKNDYRPVFF  110 (165)
T ss_pred             ccCCCCccch
Confidence            9999887775

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.96  E-value=0.0012  Score=71.93  Aligned_cols=91  Identities=15%  Similarity=0.085  Sum_probs=62.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-----------CCC--hHHH------HHHHHHHHHhHhHHHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-----------SFG--DEEK------KQAKALKVACNLNNAACKL  459 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-----------~~~--~~~~------~~~~~~~~~l~~N~a~~~l  459 (492)
                      +..+...|..++..|++.+|+..|++++..-....           ...  ++..      -...+....++++++.+++
T Consensus       331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~  410 (615)
T TIGR00990       331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF  410 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34566778888888999999999999887532110           000  0000      1112234568889999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          460 KLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       460 k~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      .+|+|++|+.+++++|+++|++..+++++.
T Consensus       411 ~~g~~~~A~~~~~kal~l~P~~~~~~~~la  440 (615)
T TIGR00990       411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLG  440 (615)
T ss_pred             HcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence            999999999999999999998887766543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=0.0029  Score=65.43  Aligned_cols=74  Identities=19%  Similarity=0.188  Sum_probs=64.2

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      .-+..++..+|+.++|..|++.|...++++..+..         ......+..|+|.||+++.+.+.|++...+|=+.||
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~---------~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~  425 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY---------SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR  425 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh---------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence            45778999999999999999999999999876421         233388899999999999999999999999999998


Q ss_pred             CCc
Q 011164          480 FLL  482 (492)
Q Consensus       480 ~n~  482 (492)
                      .++
T Consensus       426 ~~~  428 (872)
T KOG4814|consen  426 QSP  428 (872)
T ss_pred             ccH
Confidence            764

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=96.94  E-value=0.0032  Score=65.54  Aligned_cols=77  Identities=21%  Similarity=0.145  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (492)
Q Consensus       395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a  474 (492)
                      .+..+..++..|+.+...++|.+|+..|++|+...+.....+       .+.....+.|||..|.+.++|.+|..+|++|
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A  309 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERA  309 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            345666777899999999999999999999999876443322       5667889999999999999999999999999


Q ss_pred             HhcC
Q 011164          475 QQQK  478 (492)
Q Consensus       475 l~~d  478 (492)
                      +++-
T Consensus       310 l~I~  313 (508)
T KOG1840|consen  310 LEIY  313 (508)
T ss_pred             HHHH
Confidence            9874

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.94  E-value=0.0005  Score=72.92  Aligned_cols=88  Identities=25%  Similarity=0.371  Sum_probs=77.9

Q ss_pred             CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc--CHHHH
Q 011164          390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQA  467 (492)
Q Consensus       390 ~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~--~~~~a  467 (492)
                      -+....+..+..++++||.+|.+++|..|...|-.++.++..+           ......+.+|++.|++.++  +|..+
T Consensus        44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~-----------~~~~a~~~~~~~s~~m~~~l~~~~~~  112 (748)
T KOG4151|consen   44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD-----------HHVVATLRSNQASCYMQLGLGEYPKA  112 (748)
T ss_pred             cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc-----------chhhhhHHHHHHHHHhhcCccchhhh
Confidence            3466788999999999999999999999999999999987654           3456889999999998765  89999


Q ss_pred             HHHHHHHHhcCCCCccceeee
Q 011164          468 EKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       468 i~~~~~al~~dp~n~KA~~r~  488 (492)
                      +..|+-|+...|...+||+++
T Consensus       113 ~~E~~la~~~~p~i~~~Ll~r  133 (748)
T KOG4151|consen  113 IPECELALESQPRISKALLKR  133 (748)
T ss_pred             cCchhhhhhccchHHHHHhhh
Confidence            999999999999999999983

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.92  E-value=0.0018  Score=59.78  Aligned_cols=74  Identities=15%  Similarity=0.018  Sum_probs=47.7

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..+++.++|.+|+..|+++++...               ....++.+++.++..++++++|+..+.+++++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~   94 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDP---------------DDYLAYLALALYYQQLGELEKAEDSFRRALTL   94 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            355566778888888888888888888886521               11345555666666666666666666666666


Q ss_pred             CCCCcccee
Q 011164          478 KKFLLLPIF  486 (492)
Q Consensus       478 dp~n~KA~~  486 (492)
                      +|.+..+++
T Consensus        95 ~~~~~~~~~  103 (234)
T TIGR02521        95 NPNNGDVLN  103 (234)
T ss_pred             CCCCHHHHH
Confidence            655544433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.87  E-value=0.00029  Score=69.73  Aligned_cols=72  Identities=17%  Similarity=0.233  Sum_probs=63.1

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL  483 (492)
Q Consensus       404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K  483 (492)
                      ..||-+|++.+|.+|++.|+-||....+.          -..+++.+++|++..++++|+|.+||..++.+.+..|+..-
T Consensus       242 nigni~~kkr~fskaikfyrmaldqvpsi----------nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a  311 (840)
T KOG2003|consen  242 NIGNIHFKKREFSKAIKFYRMALDQVPSI----------NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA  311 (840)
T ss_pred             eecceeeehhhHHHHHHHHHHHHhhcccc----------chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh
Confidence            67999999999999999999999875432          26789999999999999999999999999999999986544


Q ss_pred             ce
Q 011164          484 PI  485 (492)
Q Consensus       484 A~  485 (492)
                      ||
T Consensus       312 ~~  313 (840)
T KOG2003|consen  312 AL  313 (840)
T ss_pred             hh
Confidence            43

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=96.85  E-value=0.0015  Score=60.87  Aligned_cols=73  Identities=14%  Similarity=0.071  Sum_probs=63.7

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .++.+|..+|++|+|..|+...+++.+.               .+....+|+-+++||.++|++..|...+.+++++.|+
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l---------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~  166 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARL---------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN  166 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhcc---------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence            3455999999999999999999999987               3334678889999999999999999999999999999


Q ss_pred             Cccceeee
Q 011164          481 LLLPIFNI  488 (492)
Q Consensus       481 n~KA~~r~  488 (492)
                      +++++-|.
T Consensus       167 ~p~~~nNl  174 (257)
T COG5010         167 EPSIANNL  174 (257)
T ss_pred             CchhhhhH
Confidence            98876654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.85  E-value=0.0022  Score=58.62  Aligned_cols=73  Identities=18%  Similarity=0.179  Sum_probs=56.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      ++-+-.-|.-++.+|+|.+|...+++|+.-=.             -......+.|++.|.+|.|++..|.++++++|++|
T Consensus       103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~-------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d  169 (250)
T COG3063         103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPA-------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD  169 (250)
T ss_pred             cchhhhhhHHHHhCCChHHHHHHHHHHHhCCC-------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence            34455667777777788888777777775311             11236678899999999999999999999999999


Q ss_pred             CCCccc
Q 011164          479 KFLLLP  484 (492)
Q Consensus       479 p~n~KA  484 (492)
                      |++.-+
T Consensus       170 p~~~~~  175 (250)
T COG3063         170 PQFPPA  175 (250)
T ss_pred             cCCChH
Confidence            998644

>PRK12370 invasion protein regulator; Provisional

Probab=96.81  E-value=0.0023  Score=68.57  Aligned_cols=69  Identities=7%  Similarity=-0.089  Sum_probs=56.9

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      +...|..+...|++.+|+..|++|++.               .+....+++++|.++..+|++++|+..+.++++++|.+
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~  405 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLL---------------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR  405 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            345677777888999999999999886               22336678999999999999999999999999999998


Q ss_pred             ccce
Q 011164          482 LLPI  485 (492)
Q Consensus       482 ~KA~  485 (492)
                      ..+.
T Consensus       406 ~~~~  409 (553)
T PRK12370        406 AAAG  409 (553)
T ss_pred             hhhH
Confidence            7653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.80  E-value=0.0011  Score=72.25  Aligned_cols=80  Identities=8%  Similarity=-0.108  Sum_probs=64.2

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      +.+......++.+++++++++|...+++++..               .+.....++++|.|+.++|+|++|+..+++++.
T Consensus       118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~  182 (694)
T PRK15179        118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---------------GSSSAREILLEAKSWDEIGQSEQADACFERLSR  182 (694)
T ss_pred             CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            34556667788888888888888888888865               334577888999999999999999999999999


Q ss_pred             cCCCCccceeeeecc
Q 011164          477 QKKFLLLPIFNIYAR  491 (492)
Q Consensus       477 ~dp~n~KA~~r~~~~  491 (492)
                      .+|++.+|++.+..+
T Consensus       183 ~~p~~~~~~~~~a~~  197 (694)
T PRK15179        183 QHPEFENGYVGWAQS  197 (694)
T ss_pred             cCCCcHHHHHHHHHH
Confidence            888888888776544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.74  E-value=0.003  Score=54.86  Aligned_cols=63  Identities=16%  Similarity=0.025  Sum_probs=51.8

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      -+...|-.+=..|+|.+|+..|.+|+.+-.               -....+.|++.|++++|+...|+..+..|+..-
T Consensus        71 y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~---------------ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         71 YWFRLGECCQAQKHWGEAIYAYGRAAQIKI---------------DAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            344555555578999999999999998732               237788999999999999999999999998874

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.73  E-value=0.0041  Score=55.60  Aligned_cols=71  Identities=15%  Similarity=0.097  Sum_probs=61.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +.-+-.+|-.+.|.++|+.|+.--++||.+               .+....++.-||-+|-|+..|++|+.++.++++.|
T Consensus       134 sIly~Nraaa~iKl~k~e~aI~dcsKaiel---------------~pty~kAl~RRAeayek~ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  134 SILYSNRAAALIKLRKWESAIEDCSKAIEL---------------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESD  198 (271)
T ss_pred             HHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---------------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence            445667888899999999999999999987               45566777789999999999999999999999999


Q ss_pred             CCCccc
Q 011164          479 KFLLLP  484 (492)
Q Consensus       479 p~n~KA  484 (492)
                      |.+..|
T Consensus       199 Ps~~ea  204 (271)
T KOG4234|consen  199 PSRREA  204 (271)
T ss_pred             cchHHH
Confidence            987643

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.69  E-value=0.0041  Score=61.44  Aligned_cols=81  Identities=11%  Similarity=0.180  Sum_probs=64.9

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC---ChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~---~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ...|..+|++++|..|+.+|+.||++++...-.   .......+..+..-+..-++.||+++++.+-|+.+.-+.+.++|
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP  259 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP  259 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence            457889999999999999999999998653221   12233445556666777899999999999999999999999999


Q ss_pred             CCcc
Q 011164          480 FLLL  483 (492)
Q Consensus       480 ~n~K  483 (492)
                      .+.-
T Consensus       260 ~~fr  263 (569)
T PF15015_consen  260 SYFR  263 (569)
T ss_pred             chhh
Confidence            7754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.66  E-value=0.0018  Score=73.36  Aligned_cols=27  Identities=7%  Similarity=0.007  Sum_probs=16.9

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKY  428 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~  428 (492)
                      +...|..+.+.|++.+|+..|++++..
T Consensus       612 ~~~LA~~l~~lG~~deA~~~l~~AL~l  638 (987)
T PRK09782        612 YVARATIYRQRHNVPAAVSDLRAALEL  638 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            344556666666666666666666654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.66  E-value=0.0061  Score=54.60  Aligned_cols=69  Identities=13%  Similarity=0.038  Sum_probs=57.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcC--------------H
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD--------------Y  464 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~--------------~  464 (492)
                      +..+...|..+++.|+|.+|+..|+++++...               .....+.+++.++.++++              |
T Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~  136 (172)
T PRK02603         72 SYILYNMGIIYASNGEHDKALEYYHQALELNP---------------KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALF  136 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHH
Confidence            34677889999999999999999999998632               235667888999988887              6


Q ss_pred             HHHHHHHHHHHhcCCCCc
Q 011164          465 KQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       465 ~~ai~~~~~al~~dp~n~  482 (492)
                      .+|+..+++++.++|+|.
T Consensus       137 ~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        137 DKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHHHHhhCchhH
Confidence            889999999999999874

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.57  E-value=0.0045  Score=57.12  Aligned_cols=71  Identities=25%  Similarity=0.326  Sum_probs=44.2

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL  483 (492)
Q Consensus       404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K  483 (492)
                      ..|..++..|+|.+|+..|.++++...             .......+.|+|.|+.+++++.+|+..+.++++.+|++..
T Consensus       104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  170 (234)
T TIGR02521       104 NYGTFLCQQGKYEQAMQQFEQAIEDPL-------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE  170 (234)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhccc-------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH
Confidence            445555666666666666666664211             0112345667777777777777777777777777777665


Q ss_pred             ceee
Q 011164          484 PIFN  487 (492)
Q Consensus       484 A~~r  487 (492)
                      +++.
T Consensus       171 ~~~~  174 (234)
T TIGR02521       171 SLLE  174 (234)
T ss_pred             HHHH
Confidence            5543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=96.55  E-value=0.0051  Score=59.38  Aligned_cols=86  Identities=21%  Similarity=0.162  Sum_probs=60.9

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc---------------c-CCCChHHHHH---HHHHHHHhHhHHHHH
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY---------------D-TSFGDEEKKQ---AKALKVACNLNNAAC  457 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~---------------~-~~~~~~~~~~---~~~~~~~l~~N~a~~  457 (492)
                      ..+.+..+.|++++.+++|.+|+..|..|+..-..               . ....-.+...   +.+-...+-..|+.+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence            34677889999999999999999999999864210               0 0000112222   223334455678899


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          458 KLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       458 ~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      ++|+|++++|+.++++||+.+|+|.
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~  140 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNG  140 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcc
Confidence            9999999999999999999998653

>smart00028 TPR Tetratricopeptide repeats

Probab=96.53  E-value=0.0046  Score=37.28  Aligned_cols=33  Identities=24%  Similarity=0.179  Sum_probs=30.1

Q ss_pred             HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      .++.++|.|+..+++|++|+..+.++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            467899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.52  E-value=0.0066  Score=55.80  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=17.3

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHh
Q 011164          404 EQGNTLFKAGKYARASKRYEKAVKYI  429 (492)
Q Consensus       404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l  429 (492)
                      ..|..+|+.|+|++|+..|+++++..
T Consensus       149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        149 LLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            45566666777777777777777654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.50  E-value=0.0063  Score=46.70  Aligned_cols=65  Identities=23%  Similarity=0.254  Sum_probs=55.0

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+...|..++..+++.+|+..|+++++.....               ..++.+++.++..++++.+|+..+.++++.+|.
T Consensus        36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDN---------------AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            45667888888999999999999999863321               267889999999999999999999999998873

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.50  E-value=0.0021  Score=41.25  Aligned_cols=29  Identities=14%  Similarity=0.024  Sum_probs=24.9

Q ss_pred             hHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          450 CNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       450 l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +|+|+|.+|.++|+|++|+..+.++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47899999999999999999999976553

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.46  E-value=0.0031  Score=64.66  Aligned_cols=69  Identities=14%  Similarity=0.054  Sum_probs=44.3

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP  484 (492)
Q Consensus       405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA  484 (492)
                      .|--++-.++|.+|+.+|+.||..-               +-...+++-|++++..-++.++||..+++||++.|+.+.+
T Consensus       436 LGVLy~ls~efdraiDcf~~AL~v~---------------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~  500 (579)
T KOG1125|consen  436 LGVLYNLSGEFDRAVDCFEAALQVK---------------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRV  500 (579)
T ss_pred             hHHHHhcchHHHHHHHHHHHHHhcC---------------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeee
Confidence            4666677899999999999999862               2334455555555555555555555555555555555555


Q ss_pred             eeee
Q 011164          485 IFNI  488 (492)
Q Consensus       485 ~~r~  488 (492)
                      .|+.
T Consensus       501 RyNl  504 (579)
T KOG1125|consen  501 RYNL  504 (579)
T ss_pred             ehhh
Confidence            5543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.40  E-value=0.0061  Score=69.06  Aligned_cols=72  Identities=18%  Similarity=0.096  Sum_probs=62.3

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+...|++++|+..|+++++.               .+....++.|+|.++.++|++++|+..+++|++++|
T Consensus       644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l---------------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        644 NYQAALGYALWDSGDIAQSREMLERAHKG---------------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID  708 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            34557788899999999999999999987               233478899999999999999999999999999999


Q ss_pred             CCcccee
Q 011164          480 FLLLPIF  486 (492)
Q Consensus       480 ~n~KA~~  486 (492)
                      ++.+..+
T Consensus       709 ~~a~i~~  715 (987)
T PRK09782        709 NQALITP  715 (987)
T ss_pred             CCchhhh
Confidence            9876543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.36  E-value=0.015  Score=53.39  Aligned_cols=79  Identities=23%  Similarity=0.142  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (492)
Q Consensus       395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a  474 (492)
                      .-..+....+.|-.++.+|++..|..-.++||+.               ++-....|.=||..|.++|+.+.|-+.+.+|
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA   95 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------------DPSYYLAHLVRAHYYQKLGENDLADESYRKA   95 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence            3445667778999999999999999999999986               4445777888999999999999999999999


Q ss_pred             HhcCCCCccceeee
Q 011164          475 QQQKKFLLLPIFNI  488 (492)
Q Consensus       475 l~~dp~n~KA~~r~  488 (492)
                      |.++|+|-..+.|+
T Consensus        96 lsl~p~~GdVLNNY  109 (250)
T COG3063          96 LSLAPNNGDVLNNY  109 (250)
T ss_pred             HhcCCCccchhhhh
Confidence            99999988776654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=96.35  E-value=0.0023  Score=61.67  Aligned_cols=90  Identities=16%  Similarity=0.085  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC------------CCh-----HHH------HHHHHHHHHh
Q 011164          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS------------FGD-----EEK------KQAKALKVAC  450 (492)
Q Consensus       394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~------------~~~-----~~~------~~~~~~~~~l  450 (492)
                      .+++.+.+..+.+.+...+++|.+|+..|++.++.-....+            ..+     +..      -.+++-.+.+
T Consensus       264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~  343 (504)
T KOG0624|consen  264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQV  343 (504)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHH
Confidence            35677888888999999999999999999999975332111            000     111      1122344667


Q ss_pred             HhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164          451 NLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL  483 (492)
Q Consensus       451 ~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K  483 (492)
                      ++.||-+|+--..|+.||.++.+|++++++|..
T Consensus       344 l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~  376 (504)
T KOG0624|consen  344 LCDRAEAYLGDEMYDDAIHDYEKALELNESNTR  376 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence            777777777777777777777777777777654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.26  E-value=0.0066  Score=37.61  Aligned_cols=32  Identities=22%  Similarity=0.243  Sum_probs=29.8

Q ss_pred             hHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          450 CNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       450 l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      ++.++|.|+.++|++++|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            57899999999999999999999999999874

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.24  E-value=0.02  Score=55.82  Aligned_cols=72  Identities=25%  Similarity=0.346  Sum_probs=55.7

Q ss_pred             HHHHHHHHhhhHHHHc-ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHH
Q 011164          397 EAAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQ  475 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~-~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al  475 (492)
                      ..|..++..|.-+.+. +++++|+..|++|+.++....         .......++.++|.++.++++|.+|+..+.++.
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~  182 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVA  182 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3455666667766677 899999999999999976532         245567889999999999999999999999998


Q ss_pred             hc
Q 011164          476 QQ  477 (492)
Q Consensus       476 ~~  477 (492)
                      ..
T Consensus       183 ~~  184 (282)
T PF14938_consen  183 KK  184 (282)
T ss_dssp             HT
T ss_pred             HH
Confidence            75

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.24  E-value=0.019  Score=49.72  Aligned_cols=87  Identities=16%  Similarity=0.134  Sum_probs=67.2

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhccc-------CCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-------~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~  473 (492)
                      .+...|...-..++...++..|++++.++...       ..+-......+......++..++.+++..++|++|+..|.+
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            44455677777889999999999999987532       13344567788899999999999999999999999999999


Q ss_pred             HHhcCCCCccceee
Q 011164          474 VQQQKKFLLLPIFN  487 (492)
Q Consensus       474 al~~dp~n~KA~~r  487 (492)
                      ++.+||-+..++..
T Consensus        88 ~l~~dP~~E~~~~~  101 (146)
T PF03704_consen   88 ALALDPYDEEAYRL  101 (146)
T ss_dssp             HHHHSTT-HHHHHH
T ss_pred             HHhcCCCCHHHHHH
Confidence            99999998766543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.24  E-value=0.015  Score=55.72  Aligned_cols=69  Identities=13%  Similarity=0.035  Sum_probs=44.7

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      +.-.|..+|..|+|..|+..|++.++....            ......++.+++.|+.+++++++|+..++++++..|++
T Consensus       183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~------------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPK------------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            345666666666666666666666654332            12235556667777777777777777777777777765


Q ss_pred             c
Q 011164          482 L  482 (492)
Q Consensus       482 ~  482 (492)
                      .
T Consensus       251 ~  251 (263)
T PRK10803        251 D  251 (263)
T ss_pred             H
Confidence            3

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.20  E-value=0.019  Score=55.05  Aligned_cols=70  Identities=10%  Similarity=-0.041  Sum_probs=56.4

Q ss_pred             HHHhhhHH-HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          402 KKEQGNTL-FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       402 ~K~~Gn~~-fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      ..+.+-.+ +++++|.+|+..|++.++.....            .....++.-+|.+|+..++|.+|+..+.+++...|+
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s------------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~  212 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS------------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK  212 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            34555555 66799999999999999875432            233556788999999999999999999999999998


Q ss_pred             Ccc
Q 011164          481 LLL  483 (492)
Q Consensus       481 n~K  483 (492)
                      +.|
T Consensus       213 s~~  215 (263)
T PRK10803        213 SPK  215 (263)
T ss_pred             Ccc
Confidence            754

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.13  E-value=0.0097  Score=61.04  Aligned_cols=67  Identities=18%  Similarity=0.098  Sum_probs=59.0

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      -+-..|-.+-|.++|.+|+..|+++|.+..               .....|.-+|.||..+|+++.|++++.++|-++|+
T Consensus       457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~---------------k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~  521 (611)
T KOG1173|consen  457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSP---------------KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD  521 (611)
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHcCC---------------CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence            355678888899999999999999998733               34788899999999999999999999999999999


Q ss_pred             Cc
Q 011164          481 LL  482 (492)
Q Consensus       481 n~  482 (492)
                      |.
T Consensus       522 n~  523 (611)
T KOG1173|consen  522 NI  523 (611)
T ss_pred             cH
Confidence            83

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.0082  Score=61.56  Aligned_cols=76  Identities=20%  Similarity=0.098  Sum_probs=62.1

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+++.|...|+.+.|.+|...+++++..++.....        ...-..+++|++.++-|+++|.+||..++++|.+.|+
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e--------~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE--------KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc--------ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            45788999999999999999999999665432111        0134678999999999999999999999999999998


Q ss_pred             Cccc
Q 011164          481 LLLP  484 (492)
Q Consensus       481 n~KA  484 (492)
                      +..+
T Consensus       488 ~~~~  491 (611)
T KOG1173|consen  488 DAST  491 (611)
T ss_pred             chhH
Confidence            8754

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.10  E-value=0.0062  Score=71.18  Aligned_cols=71  Identities=20%  Similarity=0.192  Sum_probs=61.2

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      ....|..++++|++.+|+..|++++..-.               ....++.++|.+++++++|++|+..++++|+++|+|
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P---------------~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~  418 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDN---------------TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN  418 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            34678899999999999999999998722               224678899999999999999999999999999999


Q ss_pred             ccceee
Q 011164          482 LLPIFN  487 (492)
Q Consensus       482 ~KA~~r  487 (492)
                      ..+++.
T Consensus       419 ~~a~~~  424 (1157)
T PRK11447        419 TNAVRG  424 (1157)
T ss_pred             HHHHHH
Confidence            877643

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.10  E-value=0.014  Score=54.70  Aligned_cols=81  Identities=17%  Similarity=0.148  Sum_probs=67.0

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      -+..+-++|....+.|+|.+|+..|++..+-...            .+....+.+.++.+++|.++|..|+...++=+.+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l  100 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPF------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL  100 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            3567889999999999999999999988864322            2233566778999999999999999999999999


Q ss_pred             CCCCccceeeeec
Q 011164          478 KKFLLLPIFNIYA  490 (492)
Q Consensus       478 dp~n~KA~~r~~~  490 (492)
                      .|.|+.+=|=.|+
T Consensus       101 yP~~~n~dY~~Yl  113 (254)
T COG4105         101 YPTHPNADYAYYL  113 (254)
T ss_pred             CCCCCChhHHHHH
Confidence            9999987665554

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=95.97  E-value=0.012  Score=63.50  Aligned_cols=78  Identities=17%  Similarity=0.144  Sum_probs=65.1

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+.-+++.+..+...++|+.|+..|..++.--.              --..-+|.++|.||+.+++|++|++.+.+||.
T Consensus       412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~--------------~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~  477 (895)
T KOG2076|consen  412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREG--------------YQNAFVWYKLARCYMELGEYEEAIEFYEKVLI  477 (895)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc--------------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            4455677888888899999999999998886411              11267899999999999999999999999999


Q ss_pred             cCCCCccceeee
Q 011164          477 QKKFLLLPIFNI  488 (492)
Q Consensus       477 ~dp~n~KA~~r~  488 (492)
                      ++|.|..|..++
T Consensus       478 ~~p~~~D~Ri~L  489 (895)
T KOG2076|consen  478 LAPDNLDARITL  489 (895)
T ss_pred             cCCCchhhhhhH
Confidence            999999886654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.93  E-value=0.0047  Score=63.45  Aligned_cols=62  Identities=21%  Similarity=0.235  Sum_probs=54.2

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      ..|-.+-...++.+|+..|++||.+               .+-.+.+.+|+|.|++.+|.|++|+.++-.||.+.++
T Consensus       469 RLGAtLAN~~~s~EAIsAY~rALqL---------------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  469 RLGATLANGNRSEEAISAYNRALQL---------------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HhhHHhcCCcccHHHHHHHHHHHhc---------------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            4455555667899999999999987               5566889999999999999999999999999999876

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.92  E-value=0.07  Score=40.37  Aligned_cols=68  Identities=13%  Similarity=0.186  Sum_probs=56.6

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+....++|-.+|.+.+.++|+.+|+++|+-+..            .+.+-.++--++.+|.-.|+|.+++.++-.=+++
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD------------REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567779999999999999999999999987543            2346667777899999999999999988776655

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=95.92  E-value=0.0079  Score=70.30  Aligned_cols=73  Identities=19%  Similarity=0.124  Sum_probs=62.9

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+..+|+.+..+|++.+|+..|+++++.-.               ....++.++|.++.+++++++|+..++++++++|+
T Consensus       463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P---------------~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~  527 (1157)
T PRK11447        463 RLAQQAEALENQGKWAQAAELQRQRLALDP---------------GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN  527 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            456788899999999999999999998632               22557889999999999999999999999999999


Q ss_pred             Cccceeee
Q 011164          481 LLLPIFNI  488 (492)
Q Consensus       481 n~KA~~r~  488 (492)
                      +..++|..
T Consensus       528 ~~~~~~a~  535 (1157)
T PRK11447        528 DPEQVYAY  535 (1157)
T ss_pred             CHHHHHHH
Confidence            98776643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=95.88  E-value=0.0071  Score=63.75  Aligned_cols=75  Identities=12%  Similarity=0.142  Sum_probs=62.2

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      +.+..|+-.+.+++|.+|.+.++.++++               +++....|.+++.|++++++|+.|..++..++.++|+
T Consensus       487 A~r~~~~~~~~~~~fs~~~~hle~sl~~---------------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd  551 (777)
T KOG1128|consen  487 AQRSLALLILSNKDFSEADKHLERSLEI---------------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD  551 (777)
T ss_pred             HHHhhccccccchhHHHHHHHHHHHhhc---------------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence            3345556667789999999999999887               6678888999999999999999999999999999999


Q ss_pred             Cccceeeeec
Q 011164          481 LLLPIFNIYA  490 (492)
Q Consensus       481 n~KA~~r~~~  490 (492)
                      |.-||-++..
T Consensus       552 ~~eaWnNls~  561 (777)
T KOG1128|consen  552 NAEAWNNLST  561 (777)
T ss_pred             chhhhhhhhH
Confidence            9888877643

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.87  E-value=0.031  Score=49.73  Aligned_cols=76  Identities=13%  Similarity=-0.042  Sum_probs=52.1

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHH-------
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC-------  471 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~-------  471 (492)
                      +..+...|..+.+.|++.+|+..|+++++.-...        .........++.|++..+.++++++.|+.++       
T Consensus        72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~--------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~  143 (168)
T CHL00033         72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFL--------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYW  143 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHH
Confidence            3456778999999999999999999999862111        1122334555666666666999888555555       


Q ss_pred             HHHHhcCCCCc
Q 011164          472 TKVQQQKKFLL  482 (492)
Q Consensus       472 ~~al~~dp~n~  482 (492)
                      .+++..+|.+.
T Consensus       144 ~~a~~~~p~~~  154 (168)
T CHL00033        144 KQAIALAPGNY  154 (168)
T ss_pred             HHHHHhCcccH
Confidence            46777788654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=95.87  E-value=0.0077  Score=65.64  Aligned_cols=80  Identities=4%  Similarity=-0.213  Sum_probs=69.4

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+...|.-....|+|++|.+.|..++.+               .+....+..|+|.+..+++++++|+..|.++|.
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---------------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~  148 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR---------------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS  148 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence            34566677888888999999999999999987               445688999999999999999999999999999


Q ss_pred             cCCCCccceeeeecc
Q 011164          477 QKKFLLLPIFNIYAR  491 (492)
Q Consensus       477 ~dp~n~KA~~r~~~~  491 (492)
                      .+|+|..+++.++.+
T Consensus       149 ~~p~~~~~~~~~a~~  163 (694)
T PRK15179        149 GGSSSAREILLEAKS  163 (694)
T ss_pred             cCCCCHHHHHHHHHH
Confidence            999999888776544

>PLN02789 farnesyltranstransferase

Probab=95.85  E-value=0.011  Score=58.35  Aligned_cols=47  Identities=9%  Similarity=-0.007  Sum_probs=41.7

Q ss_pred             HHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeec
Q 011164          444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYA  490 (492)
Q Consensus       444 ~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~  490 (492)
                      ++-...++++++.+..++++|++++.+|+++|++||.|..||+++..
T Consensus       138 dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~  184 (320)
T PLN02789        138 DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYF  184 (320)
T ss_pred             CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHH
Confidence            44557789999999999999999999999999999999999987653

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.84  E-value=0.0079  Score=57.02  Aligned_cols=65  Identities=20%  Similarity=0.321  Sum_probs=56.0

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .|..+.+.|.-+||+|+|+.|.++|+.|+.+-               -...-+-+|+|+|+++.++|..|+.+.++.++.
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvs---------------GyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVS---------------GYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhc---------------CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            35566788899999999999999999999873               234667789999999999999999999998865

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.78  E-value=0.0045  Score=39.12  Aligned_cols=34  Identities=26%  Similarity=0.275  Sum_probs=28.9

Q ss_pred             HHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHH
Q 011164          421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (492)
Q Consensus       421 ~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~  469 (492)
                      +|++||++               ++-...+|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie~---------------~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL---------------NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH---------------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            37888877               55568999999999999999999873

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.77  E-value=0.016  Score=51.31  Aligned_cols=61  Identities=13%  Similarity=0.085  Sum_probs=45.7

Q ss_pred             ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcC-----------HHHHHHHHHHHHhcCCCC
Q 011164          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-----------YKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       413 ~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~-----------~~~ai~~~~~al~~dp~n  481 (492)
                      .-+++|+.+|+.||++               ++.+...+.|++.+|..++.           |++|..++.+|.+.+|+|
T Consensus        49 ~miedAisK~eeAL~I---------------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   49 KMIEDAISKFEEALKI---------------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             HHHHHHHHHHHHHHHH----------------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHHHHhc---------------CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3467888888888876               66678889999999887653           999999999999999987


Q ss_pred             ccceeeeec
Q 011164          482 LLPIFNIYA  490 (492)
Q Consensus       482 ~KA~~r~~~  490 (492)
                        .+||+.+
T Consensus       114 --e~Y~ksL  120 (186)
T PF06552_consen  114 --ELYRKSL  120 (186)
T ss_dssp             --HHHHHHH
T ss_pred             --HHHHHHH
Confidence              4666654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK12370 invasion protein regulator; Provisional

Probab=95.72  E-value=0.0054  Score=65.78  Aligned_cols=64  Identities=9%  Similarity=-0.087  Sum_probs=54.8

Q ss_pred             HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       411 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      ..+++.+|+..+++|+..               ++....++.++|.++..+++|++|+..++++++++|++..+++.+.
T Consensus       316 ~~~~~~~A~~~~~~Al~l---------------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  379 (553)
T PRK12370        316 KQNAMIKAKEHAIKATEL---------------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYG  379 (553)
T ss_pred             cchHHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            456689999999999986               2334677889999999999999999999999999999999887654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.72  E-value=0.011  Score=57.50  Aligned_cols=89  Identities=21%  Similarity=0.148  Sum_probs=62.1

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-----------CCCh-HH-HHHHHHH------HHHhHhHHHHHHHH
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-----------SFGD-EE-KKQAKAL------KVACNLNNAACKLK  460 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-----------~~~~-~~-~~~~~~~------~~~l~~N~a~~~lk  460 (492)
                      .-+...|+-+.+.|++.+|++.|++|++.-..+.           ...+ ++ ...+...      ...++..+|.++++
T Consensus       147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~  226 (280)
T PF13429_consen  147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ  226 (280)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence            3456778888899999999999999999754321           1111 11 1122222      23456789999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164          461 LKDYKQAEKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       461 ~~~~~~ai~~~~~al~~dp~n~KA~~r~  488 (492)
                      +|++++|+..+.+++..+|+|+..+..+
T Consensus       227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~  254 (280)
T PF13429_consen  227 LGRYEEALEYLEKALKLNPDDPLWLLAY  254 (280)
T ss_dssp             HT-HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred             cccccccccccccccccccccccccccc
Confidence            9999999999999999999998765544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=95.71  E-value=0.012  Score=64.51  Aligned_cols=67  Identities=10%  Similarity=0.061  Sum_probs=41.5

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+-..|..++++|++.+|+..|++++..-..               ...++.|++.++.++|+|++|+..+.++++.+|+
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~---------------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~  350 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLATHPD---------------LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV  350 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            4456688888888888888888888875221               2334445555555555555555555555555554


Q ss_pred             Cc
Q 011164          481 LL  482 (492)
Q Consensus       481 n~  482 (492)
                      +.
T Consensus       351 ~~  352 (656)
T PRK15174        351 TS  352 (656)
T ss_pred             ch
Confidence            43

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.70  E-value=0.026  Score=53.11  Aligned_cols=72  Identities=8%  Similarity=0.066  Sum_probs=58.2

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHh--------cCHHHHHHHHH
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--------KDYKQAEKLCT  472 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~--------~~~~~ai~~~~  472 (492)
                      .+...|..+++.++|.+|+..|+++++.......            ....+.+++.|+.++        +++.+|+..++
T Consensus        72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~  139 (235)
T TIGR03302        72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD------------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQ  139 (235)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence            4566789999999999999999999987543211            123577888888876        88999999999


Q ss_pred             HHHhcCCCCccc
Q 011164          473 KVQQQKKFLLLP  484 (492)
Q Consensus       473 ~al~~dp~n~KA  484 (492)
                      +++..+|++..+
T Consensus       140 ~~~~~~p~~~~~  151 (235)
T TIGR03302       140 ELIRRYPNSEYA  151 (235)
T ss_pred             HHHHHCCCChhH
Confidence            999999998654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.62  E-value=0.16  Score=41.65  Aligned_cols=77  Identities=14%  Similarity=0.157  Sum_probs=57.3

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+-.....|...++.+-|.+|...|++|+..-...   +.++.=...-+..-||.-||.++.++++|++|+..++++|.+
T Consensus         8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srti---P~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen    8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTI---PAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS----TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccC---ChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            34445677888899999999999999999875432   223333345566778999999999999999999999999865

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PLN02789 farnesyltranstransferase

Probab=95.60  E-value=0.015  Score=57.58  Aligned_cols=63  Identities=10%  Similarity=0.029  Sum_probs=40.1

Q ss_pred             HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCcccee
Q 011164          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVQQQKKFLLLPIF  486 (492)
Q Consensus       409 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~-~~~~ai~~~~~al~~dp~n~KA~~  486 (492)
                      +.+.+++.+|+..+.++|.+               .+...+++++++.|+.+++ .+++++..++++++.+|+|..+|+
T Consensus        47 l~~~e~serAL~lt~~aI~l---------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~  110 (320)
T PLN02789         47 YASDERSPRALDLTADVIRL---------------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWH  110 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHH---------------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhH
Confidence            34567899999999999976               3333555555555555555 355566655666665555555554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.54  E-value=0.0066  Score=60.43  Aligned_cols=29  Identities=24%  Similarity=0.463  Sum_probs=25.8

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKY  428 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~  428 (492)
                      ..+-.+||..|..|+|.+|...|+.||+-
T Consensus       491 ~a~~nkgn~~f~ngd~dka~~~ykeal~n  519 (840)
T KOG2003|consen  491 AALTNKGNIAFANGDLDKAAEFYKEALNN  519 (840)
T ss_pred             HHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence            45678999999999999999999999964

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=95.39  E-value=0.036  Score=46.35  Aligned_cols=67  Identities=16%  Similarity=0.001  Sum_probs=54.7

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      +-+.|..+-..|+..+|+..|++++..-..            .+....++.++|.++..+|++++|+...++++...|+
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~------------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLS------------GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            446677777899999999999999974211            3345568889999999999999999999999988776

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.39  E-value=0.009  Score=60.47  Aligned_cols=48  Identities=10%  Similarity=-0.086  Sum_probs=42.2

Q ss_pred             HHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc---eeeeec
Q 011164          443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP---IFNIYA  490 (492)
Q Consensus       443 ~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA---~~r~~~  490 (492)
                      .++-....++|++.+|+++++|++|+..|++||+++|++..|   +|+++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAc  120 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKAC  120 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence            455668899999999999999999999999999999999865   777653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=95.33  E-value=0.016  Score=63.42  Aligned_cols=41  Identities=12%  Similarity=-0.085  Sum_probs=34.6

Q ss_pred             HHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceee
Q 011164          447 KVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFN  487 (492)
Q Consensus       447 ~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r  487 (492)
                      ...++.|+|.+++++++|++|+..++++++++|++..+++.
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~  323 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAM  323 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            35678899999999999999999999999999988766554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=95.23  E-value=0.084  Score=55.19  Aligned_cols=75  Identities=28%  Similarity=0.215  Sum_probs=62.4

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      +.+..+.+.+..+-.+++|++|...|+++++.+.......       +......+.|+|-+|+++|+|++|.+.+.+|+.
T Consensus       323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~-------~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED-------NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            4566677888888889999999999999999987433221       345678899999999999999999999999998


Q ss_pred             cC
Q 011164          477 QK  478 (492)
Q Consensus       477 ~d  478 (492)
                      +.
T Consensus       396 ~~  397 (508)
T KOG1840|consen  396 IL  397 (508)
T ss_pred             HH
Confidence            74

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=95.22  E-value=0.061  Score=52.13  Aligned_cols=64  Identities=19%  Similarity=0.223  Sum_probs=56.5

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      .++-.+|+.++|..|..--..|+.+               +...+.+|+.|+++...+++..+|..+|..||++.|++.
T Consensus       136 NRA~AYlk~K~FA~AE~DC~~AiaL---------------d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~  199 (536)
T KOG4648|consen  136 NRALAYLKQKSFAQAEEDCEAAIAL---------------DKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI  199 (536)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHh---------------hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence            4666788888888888887778766               788999999999999999999999999999999999864

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=95.20  E-value=0.21  Score=41.10  Aligned_cols=81  Identities=17%  Similarity=0.031  Sum_probs=65.0

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHH----HHHhc
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT----KVQQQ  477 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~----~al~~  477 (492)
                      +--.|+..|+++++-+|+-.|++|+...+......+.+..++-.+.+...-|+|.-|-.+|+-+-.+++..    +|+.+
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            44578999999999999999999999876654445556667777888888999999999999888888765    55666


Q ss_pred             CCCCc
Q 011164          478 KKFLL  482 (492)
Q Consensus       478 dp~n~  482 (492)
                      -|..+
T Consensus        84 iPQCp   88 (140)
T PF10952_consen   84 IPQCP   88 (140)
T ss_pred             ccCCC
Confidence            66554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.14  E-value=0.036  Score=36.23  Aligned_cols=31  Identities=16%  Similarity=0.083  Sum_probs=27.3

Q ss_pred             HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      ..+++|+|.+|..+++|++|+..+.+++++-
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4678999999999999999999999999873

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=95.10  E-value=0.03  Score=62.89  Aligned_cols=72  Identities=18%  Similarity=0.087  Sum_probs=61.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|+.++++|+|.+|+..++++++.-.               ....++..+|.+++++|+|++|+..++++++..
T Consensus        22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~   86 (899)
T TIGR02917        22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDP---------------NDAEARFLLGKIYLALGDYAAAEKELRKALSLG   86 (899)
T ss_pred             HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            34577899999999999999999999998622               235688899999999999999999999999998


Q ss_pred             CCCccce
Q 011164          479 KFLLLPI  485 (492)
Q Consensus       479 p~n~KA~  485 (492)
                      |.+..++
T Consensus        87 ~~~~~~~   93 (899)
T TIGR02917        87 YPKNQVL   93 (899)
T ss_pred             CChhhhH
Confidence            8765543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=94.96  E-value=0.039  Score=50.19  Aligned_cols=104  Identities=17%  Similarity=0.055  Sum_probs=75.4

Q ss_pred             cEEEEEEEeeeeecccCCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHh
Q 011164          371 TVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVAC  450 (492)
Q Consensus       371 ~l~~~v~l~~~~~~~~~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l  450 (492)
                      ++.-+|.|..+.+--..-.|+.++   .|.-+-++|+-+=.-|-+..|.--++++|.+               .+....+
T Consensus        40 ~lqqEV~iarlsqlL~~~~l~~ee---RA~l~fERGvlYDSlGL~~LAR~DftQaLai---------------~P~m~~v  101 (297)
T COG4785          40 TLQQEVILARMSQILASRALTDEE---RAQLLFERGVLYDSLGLRALARNDFSQALAI---------------RPDMPEV  101 (297)
T ss_pred             cHHHHHHHHHHHHHHHhccCChHH---HHHHHHHhcchhhhhhHHHHHhhhhhhhhhc---------------CCCcHHH
Confidence            344444444444433344555544   3445566777666667777787778888876               5556889


Q ss_pred             HhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeeccC
Q 011164          451 NLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYARL  492 (492)
Q Consensus       451 ~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~~l  492 (492)
                      ++-++.-+...++|+.|.+.++-++++||.+.-|..++.++|
T Consensus       102 fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785         102 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            999999999999999999999999999999988887776654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.95  E-value=0.018  Score=60.11  Aligned_cols=83  Identities=16%  Similarity=0.011  Sum_probs=62.0

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc----------CCCChHHHHHHHHH---------HHHhHhHHHHHHHH
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD----------TSFGDEEKKQAKAL---------KVACNLNNAACKLK  460 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~----------~~~~~~~~~~~~~~---------~~~l~~N~a~~~lk  460 (492)
                      +.+...||-+--|++++.|+++++||+.+=+..          ....+|-...+.-+         ...+|+-++.+|+|
T Consensus       422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K  501 (638)
T KOG1126|consen  422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK  501 (638)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence            367889999988999999999999999753311          11223333333333         33457779999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCc
Q 011164          461 LKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       461 ~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      +++++.|.-++.+|++++|.|.
T Consensus       502 qek~e~Ae~~fqkA~~INP~ns  523 (638)
T KOG1126|consen  502 QEKLEFAEFHFQKAVEINPSNS  523 (638)
T ss_pred             cchhhHHHHHHHhhhcCCccch
Confidence            9999999999999999999885

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=94.94  E-value=0.029  Score=62.70  Aligned_cols=85  Identities=9%  Similarity=-0.088  Sum_probs=52.5

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHHH------HHHHHHHHhHhHHHHHHHHhc
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKK------QAKALKVACNLNNAACKLKLK  462 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~------~~~~~~~~l~~N~a~~~lk~~  462 (492)
                      +...|..+.+.+++.+|+..|++++..-....             ...++...      ...+.... +.++|.++..++
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g  130 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG  130 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence            56777888899999999999999987632110             00001111      11122233 666777777777


Q ss_pred             CHHHHHHHHHHHHhcCCCCccceee
Q 011164          463 DYKQAEKLCTKVQQQKKFLLLPIFN  487 (492)
Q Consensus       463 ~~~~ai~~~~~al~~dp~n~KA~~r  487 (492)
                      ++.+|+..+.++++++|++..+++.
T Consensus       131 ~~~~Al~~l~~al~~~P~~~~~~~~  155 (765)
T PRK10049        131 RHWDELRAMTQALPRAPQTQQYPTE  155 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            7777777777777777776655543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.82  E-value=0.051  Score=41.30  Aligned_cols=32  Identities=19%  Similarity=0.047  Sum_probs=28.7

Q ss_pred             HHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       446 ~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      ....+++|+|.+|..+++|++|+..+++||++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~   34 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDI   34 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999976

...

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=94.76  E-value=0.047  Score=61.38  Aligned_cols=91  Identities=19%  Similarity=0.074  Sum_probs=57.4

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-------------CChHHHHHH------HHHHHHhHhHHHHHH
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDEEKKQA------KALKVACNLNNAACK  458 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-------------~~~~~~~~~------~~~~~~l~~N~a~~~  458 (492)
                      .+..+...|..+++.|+|.+|+..|+++++.-.....             ..++....+      .+....++..++.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  203 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL  203 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            3456678899999999999999999999875321100             000000111      111234566677777


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164          459 LKLKDYKQAEKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       459 lk~~~~~~ai~~~~~al~~dp~n~KA~~r~  488 (492)
                      .+++++++|+..+.++++++|++..++++.
T Consensus       204 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~  233 (899)
T TIGR02917       204 LSLGNIELALAAYRKAIALRPNNPAVLLAL  233 (899)
T ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            777777777777777777777776665543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=94.72  E-value=0.013  Score=42.92  Aligned_cols=38  Identities=13%  Similarity=-0.011  Sum_probs=34.5

Q ss_pred             hHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          452 LNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       452 ~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      +++|..+++.|+|++|+..++++++.+|+|..+++.+.
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg   38 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLG   38 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            36899999999999999999999999999999887653

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=94.67  E-value=0.087  Score=53.51  Aligned_cols=34  Identities=9%  Similarity=-0.036  Sum_probs=23.0

Q ss_pred             HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      .++++++.+|.+++++++|+..++++++.+|++.
T Consensus       250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~  283 (389)
T PRK11788        250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD  283 (389)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence            3456667777777777777777777777766553

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=94.59  E-value=0.19  Score=43.52  Aligned_cols=62  Identities=21%  Similarity=0.201  Sum_probs=50.8

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~  473 (492)
                      ......|+.+|.+|+|.+|+..|++++..-..            ..+...+.+++|.|++.+++|++|+...+.
T Consensus        49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d------------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   49 LAALQLAKAAYEQGDYDEAKAALEKALANAPD------------PELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            34556888999999999999999999975211            456677788999999999999999998866

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=94.55  E-value=0.089  Score=53.37  Aligned_cols=64  Identities=20%  Similarity=0.170  Sum_probs=54.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      +.-+-.++.-+.++++|+.|+...++|+...               +.....+..||.||+++++|+.|+...+-+-..
T Consensus       234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls---------------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  234 SELLNLQAEFLLSKKKYELALEIAKKAVELS---------------PSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            5556778999999999999999999999883               345788999999999999999999888865444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=94.54  E-value=0.037  Score=54.80  Aligned_cols=75  Identities=13%  Similarity=0.178  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (492)
Q Consensus       394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~  473 (492)
                      +++.....+=..||.+|--|+|..|+..-+.-|++.....+         +.-.-.+++|++.||+-+++|+.|++++.+
T Consensus       190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~  260 (639)
T KOG1130|consen  190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYKL  260 (639)
T ss_pred             hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence            44556666778899999999999999988888876432211         334456899999999999999999999998


Q ss_pred             HHhc
Q 011164          474 VQQQ  477 (492)
Q Consensus       474 al~~  477 (492)
                      +|.+
T Consensus       261 tl~L  264 (639)
T KOG1130|consen  261 TLNL  264 (639)
T ss_pred             HHHH
Confidence            8654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=94.51  E-value=0.045  Score=55.47  Aligned_cols=69  Identities=20%  Similarity=0.081  Sum_probs=57.8

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP  484 (492)
Q Consensus       405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA  484 (492)
                      .+.-+++.++.++|++.+++++..               .+....+..|+|.++++.|++++||...+..+.-+|+++..
T Consensus       346 ~~~i~~~~nk~~~A~e~~~kal~l---------------~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~  410 (484)
T COG4783         346 AGDILLEANKAKEAIERLKKALAL---------------DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG  410 (484)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhc---------------CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchH
Confidence            344456788899999999999987               33347788999999999999999999999999999999877


Q ss_pred             eeee
Q 011164          485 IFNI  488 (492)
Q Consensus       485 ~~r~  488 (492)
                      |...
T Consensus       411 w~~L  414 (484)
T COG4783         411 WDLL  414 (484)
T ss_pred             HHHH
Confidence            6543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.51  E-value=0.085  Score=32.70  Aligned_cols=29  Identities=24%  Similarity=0.405  Sum_probs=25.4

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKY  428 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~  428 (492)
                      ..+...|..+++.|+|++|++.|++++++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45678899999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=94.50  E-value=0.069  Score=59.67  Aligned_cols=69  Identities=9%  Similarity=-0.116  Sum_probs=49.5

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      ...|..+...|++.+|+..+++++....               ....++.++|.++.+++++++|+..+++++.++|+|.
T Consensus       363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P---------------~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~  427 (765)
T PRK10049        363 SLLSQVAKYSNDLPQAEMRARELAYNAP---------------GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI  427 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence            4566677788888889888888887632               2245677777777777777777777777777777776


Q ss_pred             ccee
Q 011164          483 LPIF  486 (492)
Q Consensus       483 KA~~  486 (492)
                      .+++
T Consensus       428 ~l~~  431 (765)
T PRK10049        428 NLEV  431 (765)
T ss_pred             HHHH
Confidence            5444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.46  E-value=0.047  Score=50.85  Aligned_cols=77  Identities=14%  Similarity=0.143  Sum_probs=61.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc---CHHHHHHHHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTKVQ  475 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~---~~~~ai~~~~~al  475 (492)
                      .+.+.+.++-++..++|++|.-||+..+-.               .++...++.-+|-.++-++   ++.-|..++.++|
T Consensus       154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~---------------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al  218 (289)
T KOG3060|consen  154 QEAWHELAEIYLSEGDFEKAAFCLEELLLI---------------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL  218 (289)
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            446677888889999999999999998854               4445566666666655544   7899999999999


Q ss_pred             hcCCCCccceeeeec
Q 011164          476 QQKKFLLLPIFNIYA  490 (492)
Q Consensus       476 ~~dp~n~KA~~r~~~  490 (492)
                      +++|.|.-|||-+|+
T Consensus       219 kl~~~~~ral~GI~l  233 (289)
T KOG3060|consen  219 KLNPKNLRALFGIYL  233 (289)
T ss_pred             HhChHhHHHHHHHHH
Confidence            999999999998875

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=94.41  E-value=0.062  Score=58.65  Aligned_cols=83  Identities=13%  Similarity=0.160  Sum_probs=67.2

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+.+.|--+|..|++..|...+.+|+..+......++.     ....+++.+|+|.|.-+++++..|-..+..+|...|+
T Consensus       454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~-----~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~  528 (1018)
T KOG2002|consen  454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG-----KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG  528 (1018)
T ss_pred             HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc-----ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence            45567778888999999999999988775432221111     3455888999999999999999999999999999999


Q ss_pred             Cccceeee
Q 011164          481 LLLPIFNI  488 (492)
Q Consensus       481 n~KA~~r~  488 (492)
                      ++.|+.|.
T Consensus       529 YId~ylRl  536 (1018)
T KOG2002|consen  529 YIDAYLRL  536 (1018)
T ss_pred             hHHHHHHh
Confidence            99999987

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=94.38  E-value=0.13  Score=52.31  Aligned_cols=87  Identities=17%  Similarity=0.075  Sum_probs=56.7

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHHHHHH-----------HHHHHhHhHHHH
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKKQAK-----------ALKVACNLNNAA  456 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~~~~-----------~~~~~l~~N~a~  456 (492)
                      .+...|..+++.|+|.+|...|.++++.-....             ...++....+.           .....++++++.
T Consensus       109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~  188 (389)
T PRK11788        109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ  188 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            445667777888888888888888775311000             00000001111           112346778999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCCccceee
Q 011164          457 CKLKLKDYKQAEKLCTKVQQQKKFLLLPIFN  487 (492)
Q Consensus       457 ~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r  487 (492)
                      ++++.+++++|+..++++++.+|++..+++.
T Consensus       189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  219 (389)
T PRK11788        189 QALARGDLDAARALLKKALAADPQCVRASIL  219 (389)
T ss_pred             HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHH
Confidence            9999999999999999999999988877654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=94.35  E-value=0.036  Score=60.41  Aligned_cols=79  Identities=15%  Similarity=0.064  Sum_probs=67.8

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|+-++.+|+|..|++.|+.+++..-             ......++.-||.+|++.+.|.+|.+....|+.+.|
T Consensus       681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~-------------~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p  747 (1018)
T KOG2002|consen  681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFY-------------KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP  747 (1018)
T ss_pred             ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc-------------ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            3456788999999999999999999998642             223467777899999999999999999999999999


Q ss_pred             CCccceeeeecc
Q 011164          480 FLLLPIFNIYAR  491 (492)
Q Consensus       480 ~n~KA~~r~~~~  491 (492)
                      .|.-..|++++.
T Consensus       748 ~~~~v~FN~a~v  759 (1018)
T KOG2002|consen  748 SNTSVKFNLALV  759 (1018)
T ss_pred             ccchHHhHHHHH
Confidence            999999888753

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.29  E-value=0.1  Score=32.48  Aligned_cols=30  Identities=30%  Similarity=0.525  Sum_probs=26.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKY  428 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~  428 (492)
                      |..+-.+|..++..++|.+|+..|++|+++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            345678999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.27  E-value=0.044  Score=55.12  Aligned_cols=92  Identities=14%  Similarity=0.073  Sum_probs=70.0

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC----CChH---------------HHHHHHHHHHHhHhHHHHHH
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS----FGDE---------------EKKQAKALKVACNLNNAACK  458 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~----~~~~---------------~~~~~~~~~~~l~~N~a~~~  458 (492)
                      ....+--.|.++...++-..|+..|++|++....+..    ..+.               ....+++-...++.-|+.||
T Consensus       363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY  442 (559)
T KOG1155|consen  363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECY  442 (559)
T ss_pred             hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            4455667899999999999999999999998654321    2211               11233445567788899999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          459 LKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       459 lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      .|+++..+||.++..|+....-+..||+|++
T Consensus       443 ~kl~~~~eAiKCykrai~~~dte~~~l~~La  473 (559)
T KOG1155|consen  443 EKLNRLEEAIKCYKRAILLGDTEGSALVRLA  473 (559)
T ss_pred             HHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence            9999999999999999999877778887753

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.20  E-value=0.059  Score=54.28  Aligned_cols=69  Identities=9%  Similarity=0.013  Sum_probs=57.5

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP  484 (492)
Q Consensus       405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA  484 (492)
                      .||-+--++++++|+..|++||++               ++-...++.=++.=|+.|++-..||..++.|++++|.+-+|
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkL---------------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA  400 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKL---------------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA  400 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhc---------------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence            366666678899999999999997               44557778888888999999999999999999999988888


Q ss_pred             eeee
Q 011164          485 IFNI  488 (492)
Q Consensus       485 ~~r~  488 (492)
                      ||-+
T Consensus       401 WYGL  404 (559)
T KOG1155|consen  401 WYGL  404 (559)
T ss_pred             Hhhh
Confidence            8853

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.12  E-value=0.32  Score=38.65  Aligned_cols=64  Identities=14%  Similarity=0.189  Sum_probs=49.2

Q ss_pred             HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       409 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      ..+.++|..|+....+...+.........      .........|+|.++..+|++++|+..+++|+.+-
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            45789999999999999887543211110      22345568899999999999999999999999874

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=93.94  E-value=0.24  Score=48.18  Aligned_cols=32  Identities=19%  Similarity=0.166  Sum_probs=25.6

Q ss_pred             HHHHhHhHHHHHHHHh-cCHHHHHHHHHHHHhc
Q 011164          446 LKVACNLNNAACKLKL-KDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       446 ~~~~l~~N~a~~~lk~-~~~~~ai~~~~~al~~  477 (492)
                      ....++.|+|..|.+. +++++|+..+.+|+++
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL  144 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4466788899999888 9999999999999876

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=93.84  E-value=0.046  Score=57.23  Aligned_cols=73  Identities=18%  Similarity=0.080  Sum_probs=51.7

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      ++.-.|..+.|+++|+.|.-.|++|+..               .+-...+.+-++..+.++|+.++|++.+++|+-+||.
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~I---------------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k  555 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEI---------------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK  555 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcC---------------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence            3444444455555555555555555543               4556777788899999999999999999999999999


Q ss_pred             Cccceeee
Q 011164          481 LLLPIFNI  488 (492)
Q Consensus       481 n~KA~~r~  488 (492)
                      |+-..|.+
T Consensus       556 n~l~~~~~  563 (638)
T KOG1126|consen  556 NPLCKYHR  563 (638)
T ss_pred             CchhHHHH
Confidence            98655544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.79  E-value=0.19  Score=47.60  Aligned_cols=72  Identities=18%  Similarity=0.172  Sum_probs=52.6

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+.+.+-.+|+.|+|..|...|..-++-+.....            ....++=|+.|++.+++|++|...+..+.+-.|+
T Consensus       143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~------------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~  210 (262)
T COG1729         143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY------------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK  210 (262)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc------------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence            3778888999999999999999988887654322            2344455677777777777777777777777777


Q ss_pred             Cccc
Q 011164          481 LLLP  484 (492)
Q Consensus       481 n~KA  484 (492)
                      +.||
T Consensus       211 s~KA  214 (262)
T COG1729         211 SPKA  214 (262)
T ss_pred             CCCC
Confidence            6665

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.76  E-value=0.13  Score=32.82  Aligned_cols=27  Identities=26%  Similarity=0.454  Sum_probs=23.1

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKY  428 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~  428 (492)
                      +...|+-+.+.|+|++|+..|+++|.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            457899999999999999999998865

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.72  E-value=0.12  Score=52.58  Aligned_cols=96  Identities=13%  Similarity=0.073  Sum_probs=73.7

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-------------CChH------HHHHHHHHHHHhHhHHHH
Q 011164          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDE------EKKQAKALKVACNLNNAA  456 (492)
Q Consensus       396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-------------~~~~------~~~~~~~~~~~l~~N~a~  456 (492)
                      -..|..+--+|.-+|=.|++..|...+.++|++-.....             .+++      ....+++....+|..|++
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ  402 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ  402 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence            345777888899999999998888888888875322111             1111      224456677889999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCCccceeeeecc
Q 011164          457 CKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYAR  491 (492)
Q Consensus       457 ~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~~  491 (492)
                      .++-+++|++|+.++++++.++|+|.-++-.+|.+
T Consensus       403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a  437 (606)
T KOG0547|consen  403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCA  437 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence            99999999999999999999999998877666544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=93.57  E-value=0.2  Score=52.95  Aligned_cols=63  Identities=11%  Similarity=-0.086  Sum_probs=53.8

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL  483 (492)
Q Consensus       405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K  483 (492)
                      .|-.+..+|++.+|...|++|+.+-               + ....|..++.++...|++++|++.+.+|++++|.++.
T Consensus       426 la~~~~~~g~~~~A~~~l~rAl~L~---------------p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        426 LAVQALVKGKTDEAYQAINKAIDLE---------------M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC---------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            4555566899999999999999872               2 2568889999999999999999999999999998763

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.39  E-value=0.14  Score=53.56  Aligned_cols=78  Identities=17%  Similarity=0.245  Sum_probs=63.8

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      +-.+|.-+..+|+.++|++.|++|+..           .....++..-++..++.|++-+.+|++|..++.+.++.+ +.
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~-----------q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~W  337 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIES-----------QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KW  337 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccc-----------hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-cc
Confidence            445667777889999999999998842           134567788899999999999999999999999998864 66


Q ss_pred             ccceeeeecc
Q 011164          482 LLPIFNIYAR  491 (492)
Q Consensus       482 ~KA~~r~~~~  491 (492)
                      .||+|.+..+
T Consensus       338 Ska~Y~Y~~a  347 (468)
T PF10300_consen  338 SKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHH
Confidence            8999987654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.33  E-value=0.22  Score=49.66  Aligned_cols=69  Identities=12%  Similarity=-0.065  Sum_probs=55.6

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      +....+.-+-.+|++.+++...+++|.....                ..+++-++..+...+++++|+.++.+||.+||+
T Consensus       440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D----------------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~  503 (564)
T KOG1174|consen  440 AVNLIAELCQVEGPTKDIIKLLEKHLIIFPD----------------VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK  503 (564)
T ss_pred             HHHHHHHHHHhhCccchHHHHHHHHHhhccc----------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence            3344555566788888888888888865332                568888999999999999999999999999999


Q ss_pred             Cccce
Q 011164          481 LLLPI  485 (492)
Q Consensus       481 n~KA~  485 (492)
                      |.+++
T Consensus       504 ~~~sl  508 (564)
T KOG1174|consen  504 SKRTL  508 (564)
T ss_pred             chHHH
Confidence            98764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=93.17  E-value=0.17  Score=56.50  Aligned_cols=90  Identities=13%  Similarity=-0.040  Sum_probs=64.5

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-------------CChHHHHHHH------HHHHHhHhHHHHHH
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDEEKKQAK------ALKVACNLNNAACK  458 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-------------~~~~~~~~~~------~~~~~l~~N~a~~~  458 (492)
                      .+....+++-..|++|+|..|+..|+++++.-.....             ..++....++      ......+..+|.++
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            3446788999999999999999999999976443210             0111111111      11233455567899


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCccceee
Q 011164          459 LKLKDYKQAEKLCTKVQQQKKFLLLPIFN  487 (492)
Q Consensus       459 lk~~~~~~ai~~~~~al~~dp~n~KA~~r  487 (492)
                      ..+++|.+|+..++++++.+|+|..+++-
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~g  141 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPDLISG  141 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            99999999999999999999999887753

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.06  E-value=0.44  Score=46.26  Aligned_cols=87  Identities=20%  Similarity=0.193  Sum_probs=69.2

Q ss_pred             CCChHHHHHHHHHHHHhhhHHHHcc-cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHH
Q 011164          389 DMNTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA  467 (492)
Q Consensus       389 ~~~~~e~l~~a~~~K~~Gn~~fk~~-~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~a  467 (492)
                      .+++......+..+.+.|..+++++ +|..|....++|.++++... ..+.......+++..++.-+|.||+..+.++..
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~-~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG-KMDKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh-hccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            5677778889999999999999999 99999999999999986531 111223455788999999999999999988655


Q ss_pred             HHHHHHHHhc
Q 011164          468 EKLCTKVQQQ  477 (492)
Q Consensus       468 i~~~~~al~~  477 (492)
                      .+ |.++++.
T Consensus       104 ~k-a~~~l~~  112 (278)
T PF08631_consen  104 EK-ALNALRL  112 (278)
T ss_pred             HH-HHHHHHH
Confidence            55 6666544

It is also involved in sporulation [].

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=93.06  E-value=0.12  Score=55.22  Aligned_cols=84  Identities=18%  Similarity=0.013  Sum_probs=54.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC---------------CChH------HHHHHHHHHHHhHhHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS---------------FGDE------EKKQAKALKVACNLNNAAC  457 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~---------------~~~~------~~~~~~~~~~~l~~N~a~~  457 (492)
                      +..+...|-.+-.+|++.+|.+.|..|+.+-.....               --.+      +.-++++.....|.+++-+
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v  763 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV  763 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            344577888888899999999999999865221100               0000      1123445556667777777


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          458 KLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       458 ~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      +.++|+.++|.++++.|+++++.++
T Consensus       764 ~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  764 FKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHccchHHHHHHHHHHHhhccCCC
Confidence            7777777777777777777776665

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.87  E-value=0.72  Score=41.43  Aligned_cols=69  Identities=20%  Similarity=0.247  Sum_probs=56.7

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      +.-..+.+.|+-+++-|++..|++.|.++..+...            ....+.++.|+..+.+-.++|..+..+.++|-.
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            33456778999999999999999999999887543            456778888888888889999999888888854


Q ss_pred             c
Q 011164          477 Q  477 (492)
Q Consensus       477 ~  477 (492)
                      +
T Consensus       102 ~  102 (177)
T PF10602_consen  102 L  102 (177)
T ss_pred             H
Confidence            4

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.73  E-value=0.79  Score=34.72  Aligned_cols=60  Identities=22%  Similarity=0.205  Sum_probs=43.1

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHhHhHHH
Q 011164          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNA  455 (492)
Q Consensus       396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-~~~~~~~~~~~~~~~~l~~N~a  455 (492)
                      +..|..+-.+|.+.=+.++|.+|+.+|..+++++...- ...++...+.-..++.=|+++|
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RA   63 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRA   63 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence            45677778888899899999999999999999986532 2233444555555555566655

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.65  E-value=0.64  Score=35.42  Aligned_cols=61  Identities=20%  Similarity=0.225  Sum_probs=41.3

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHhHhHHHHH
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAAC  457 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-~~~~~~~~~~~~~~~~l~~N~a~~  457 (492)
                      ..|..+-.+|.++=+.|+|.+|+.+|.+||.++...- ...++.....-..++.-|.+||-.
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~   65 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEA   65 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3466777888999999999999999999999885432 122233344444455555665543

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.49  E-value=0.45  Score=45.11  Aligned_cols=72  Identities=15%  Similarity=0.072  Sum_probs=60.0

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      ...=.|+.+|.+|+|.+|...|.++++-+...+..            ...++-++.|...+++-++|.....++++--|+
T Consensus       180 A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA------------pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~  247 (262)
T COG1729         180 AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA------------PDALLKLGVSLGRLGNTDEACATLQQVIKRYPG  247 (262)
T ss_pred             hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            34447889999999999999999999866554332            456777999999999999999999999999998


Q ss_pred             Cccc
Q 011164          481 LLLP  484 (492)
Q Consensus       481 n~KA  484 (492)
                      ...|
T Consensus       248 t~aA  251 (262)
T COG1729         248 TDAA  251 (262)
T ss_pred             CHHH
Confidence            7654

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.40  E-value=1.2  Score=33.60  Aligned_cols=64  Identities=17%  Similarity=0.102  Sum_probs=44.8

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHhHhHHHHHHHH
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAACKLK  460 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-~~~~~~~~~~~~~~~~l~~N~a~~~lk  460 (492)
                      +.|..+-.++-++=++|+|.+|+.+|++|+..|.... ..+++.....-..++.=|.|++-..-+
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~   68 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEK   68 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777888899999999999999999999875432 223334444455566667777665433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=92.38  E-value=0.22  Score=49.83  Aligned_cols=26  Identities=27%  Similarity=0.302  Sum_probs=20.4

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHh
Q 011164          404 EQGNTLFKAGKYARASKRYEKAVKYI  429 (492)
Q Consensus       404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l  429 (492)
                      ..|..+..+|++.+|...|++++..-
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~  144 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELN  144 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            45667778888999999888888753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.32  E-value=0.12  Score=43.51  Aligned_cols=39  Identities=13%  Similarity=0.209  Sum_probs=34.2

Q ss_pred             HHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164          447 KVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI  485 (492)
Q Consensus       447 ~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~  485 (492)
                      +-.|.+-+|..+.|+++|+.++.+|+..|+.+|+|..|+
T Consensus        70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            345666799999999999999999999999999998763

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.18  E-value=0.92  Score=34.41  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=30.0

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  431 (492)
                      ..|..+-.++.++=++|+|.+|+..|+.|+.++..
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            45667778888888999999999999999998754

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=92.15  E-value=0.36  Score=48.18  Aligned_cols=73  Identities=12%  Similarity=0.043  Sum_probs=63.8

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      ....+.-+||.+...++..+|+-.|+.|.++               .+-+..+|--+-.||+..+++++|...++.+++.
T Consensus       333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L---------------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~  397 (564)
T KOG1174|consen  333 NHEALILKGRLLIALERHTQAVIAFRTAQML---------------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL  397 (564)
T ss_pred             cchHHHhccHHHHhccchHHHHHHHHHHHhc---------------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            3456677889999999999999999988887               5567889999999999999999999999999999


Q ss_pred             CCCCccce
Q 011164          478 KKFLLLPI  485 (492)
Q Consensus       478 dp~n~KA~  485 (492)
                      -|+|.|+|
T Consensus       398 ~~~sA~~L  405 (564)
T KOG1174|consen  398 FQNSARSL  405 (564)
T ss_pred             hhcchhhh
Confidence            99998876

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=92.10  E-value=1.1  Score=36.99  Aligned_cols=70  Identities=17%  Similarity=0.210  Sum_probs=55.3

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      -....+-+.|+|.+++..-.++|+|++......+++    -.+-+.+-.|+|.++--+|+.++|+..++.+-++
T Consensus        60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde----GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   60 GLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE----GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc----chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            344556788999999999999999999877766665    4556778889999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.94  E-value=0.84  Score=34.59  Aligned_cols=36  Identities=25%  Similarity=0.118  Sum_probs=31.9

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (492)
Q Consensus       396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  431 (492)
                      ++.|..+-.+|...=+.|+|++|+.+|..||.++..
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            567788888999999999999999999999998754

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=91.81  E-value=0.15  Score=49.39  Aligned_cols=71  Identities=15%  Similarity=-0.018  Sum_probs=48.9

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL  483 (492)
Q Consensus       404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K  483 (492)
                      .....+++.+++.++.....++.....             .+....++.-+|.++.+.|++++|+..+.+||+++|+|..
T Consensus       115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~  181 (280)
T PF13429_consen  115 SALQLYYRLGDYDEAEELLEKLEELPA-------------APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD  181 (280)
T ss_dssp             ---H-HHHTT-HHHHHHHHHHHHH-T----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhccC-------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            344455677888888888877664311             1133677888999999999999999999999999999987


Q ss_pred             ceee
Q 011164          484 PIFN  487 (492)
Q Consensus       484 A~~r  487 (492)
                      ++..
T Consensus       182 ~~~~  185 (280)
T PF13429_consen  182 ARNA  185 (280)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6544

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=91.81  E-value=0.25  Score=47.32  Aligned_cols=80  Identities=13%  Similarity=0.030  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHH
Q 011164          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQ  475 (492)
Q Consensus       396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al  475 (492)
                      ...|......+...+++|+-++|...|..|+.+..               ....++.-++...-.-++.-+|-.++.+||
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP---------------~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL  177 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAP---------------TNPQILIEMGQFREMHNEIVEADQCYVKAL  177 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCC---------------CCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence            34444445567788999999999999999998732               224444444544444566778888999999


Q ss_pred             hcCCCCccceeeeec
Q 011164          476 QQKKFLLLPIFNIYA  490 (492)
Q Consensus       476 ~~dp~n~KA~~r~~~  490 (492)
                      .++|.|.+||-++.-
T Consensus       178 tisP~nseALvnR~R  192 (472)
T KOG3824|consen  178 TISPGNSEALVNRAR  192 (472)
T ss_pred             eeCCCchHHHhhhhc
Confidence            999999999987653

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=91.78  E-value=0.79  Score=33.99  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (492)
Q Consensus       396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  431 (492)
                      ++.|..+-.+|..+=+.|+|.+|+..|++|+.++..
T Consensus         2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen    2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            355677778888888899999999999999998754

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=91.57  E-value=0.28  Score=52.16  Aligned_cols=75  Identities=15%  Similarity=0.017  Sum_probs=64.9

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+-..|....+.++++.|...|++++..               ++-....++|++.+|+++++-.+|.....+||+.+-.
T Consensus       521 ~wf~~G~~ALqlek~q~av~aF~rcvtL---------------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~  585 (777)
T KOG1128|consen  521 TWFGLGCAALQLEKEQAAVKAFHRCVTL---------------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ  585 (777)
T ss_pred             HHHhccHHHHHHhhhHHHHHHHHHHhhc---------------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence            4556788888899999999999999986               4556888999999999999999999999999999999


Q ss_pred             Cccceeeeec
Q 011164          481 LLLPIFNIYA  490 (492)
Q Consensus       481 n~KA~~r~~~  490 (492)
                      |.+.|-|+-+
T Consensus       586 ~w~iWENyml  595 (777)
T KOG1128|consen  586 HWQIWENYML  595 (777)
T ss_pred             CCeeeechhh
Confidence            9888877643

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.26  E-value=0.099  Score=51.03  Aligned_cols=42  Identities=21%  Similarity=0.218  Sum_probs=35.6

Q ss_pred             HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      ..+++-+|.|++.+++|++|.....++|+.+|+++.++.+.+
T Consensus       201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNli  242 (290)
T PF04733_consen  201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLI  242 (290)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            566778999999999999999999999999999988877653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=90.83  E-value=0.11  Score=38.75  Aligned_cols=35  Identities=11%  Similarity=-0.004  Sum_probs=31.0

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          455 AACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       455 a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      ...|++.++|++|+..+++++.++|+++.+++.+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a   36 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRA   36 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            56789999999999999999999999998877543

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.71  E-value=1.4  Score=33.30  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=31.7

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (492)
Q Consensus       396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  431 (492)
                      ++.|..+-.+|...=+.|+|++|+..|.+|+.++..
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   38 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            567778888899999999999999999999998754

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=90.40  E-value=0.3  Score=47.33  Aligned_cols=65  Identities=20%  Similarity=0.297  Sum_probs=53.5

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL  483 (492)
Q Consensus       404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K  483 (492)
                      .++-..+--|||..|+.--++|+.+               ++....+|.--|.|++.+++|..|...|.+.|+++-.+-+
T Consensus       124 NRAAa~~~l~NyRs~l~Dcs~al~~---------------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~  188 (390)
T KOG0551|consen  124 NRAAAQLYLGNYRSALNDCSAALKL---------------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKK  188 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhc---------------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            4444455567889998888888877               6677899999999999999999999999999998865443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=90.32  E-value=0.84  Score=45.62  Aligned_cols=68  Identities=13%  Similarity=0.046  Sum_probs=55.5

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      .+...|..++..|++++|+..|.+++......           ......++.++|.+++.+|++++|+..+++++...|
T Consensus       150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~-----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS-----------SMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC-----------cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            34567888899999999999999999864321           223456788999999999999999999999987766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=90.23  E-value=0.33  Score=54.21  Aligned_cols=91  Identities=9%  Similarity=-0.051  Sum_probs=50.5

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-------------CChHHHHH---HHHHHHHhHhHHHHHHHH--hc
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDEEKKQ---AKALKVACNLNNAACKLK--LK  462 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-------------~~~~~~~~---~~~~~~~l~~N~a~~~lk--~~  462 (492)
                      .++..|..+..+|+|.+|+..|+++++.-.....             ..++....   +.+.......=++..++.  ++
T Consensus       104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~  183 (822)
T PRK14574        104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATD  183 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcc
Confidence            3444566777789999999999999986432110             00000011   111111111113333333  45


Q ss_pred             CHHHHHHHHHHHHhcCCCCccceeeeecc
Q 011164          463 DYKQAEKLCTKVQQQKKFLLLPIFNIYAR  491 (492)
Q Consensus       463 ~~~~ai~~~~~al~~dp~n~KA~~r~~~~  491 (492)
                      ++.+|+..++++++.+|+|.++++.++.+
T Consensus       184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~  212 (822)
T PRK14574        184 RNYDALQASSEAVRLAPTSEEVLKNHLEI  212 (822)
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            56558888888888888877777666544

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=90.20  E-value=0.53  Score=44.91  Aligned_cols=72  Identities=13%  Similarity=0.086  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhc------ccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc---cceeeee
Q 011164          419 SKRYEKAVKYIE------YDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL---LPIFNIY  489 (492)
Q Consensus       419 ~~~Y~~al~~l~------~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~---KA~~r~~  489 (492)
                      +..|++.+..++      .+..+.+++++.++.+...++.-.|..|++.+.|.+|+..|+++|.+||=+.   |.+.+.+
T Consensus       244 ide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~l  323 (361)
T COG3947         244 IDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASL  323 (361)
T ss_pred             HHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence            344555555542      2345666788889999999999999999999999999999999999998443   4444444


Q ss_pred             c
Q 011164          490 A  490 (492)
Q Consensus       490 ~  490 (492)
                      .
T Consensus       324 a  324 (361)
T COG3947         324 A  324 (361)
T ss_pred             H
Confidence            3

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=90.10  E-value=0.32  Score=54.25  Aligned_cols=39  Identities=10%  Similarity=0.017  Sum_probs=19.2

Q ss_pred             hHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164          450 CNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       450 l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~  488 (492)
                      ++..+|.||-++|++++|+..++++|++||+|+-|+-|+
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~  156 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKL  156 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHH
Confidence            344445555555555555555555555555554444443

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.89  E-value=1.5  Score=44.67  Aligned_cols=88  Identities=18%  Similarity=0.278  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh----------------------------------HHH
Q 011164          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD----------------------------------EEK  440 (492)
Q Consensus       395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~----------------------------------~~~  440 (492)
                      .+.........|-++|+.|+|.+|+..|+..|..+....-.+.                                  ++.
T Consensus       200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~  279 (422)
T PF06957_consen  200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ  279 (422)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence            3444444555799999999999999999999987532111111                                  010


Q ss_pred             H------------HHHHHHHHhHhHHHH-HHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          441 K------------QAKALKVACNLNNAA-CKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       441 ~------------~~~~~~~~l~~N~a~-~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      +            .+.+....+-++.|+ ..+|.++|..|-..|++.|++.|+..
T Consensus       280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~  334 (422)
T PF06957_consen  280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE  334 (422)
T ss_dssp             HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence            0            012222223334444 45689999999999999999988653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.83  E-value=2.2  Score=32.16  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc
Q 011164          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD  432 (492)
Q Consensus       396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~  432 (492)
                      ++.|..+-.+|..+=+.|+|.+|+..|..|+..+...
T Consensus         3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~   39 (75)
T cd02656           3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQA   39 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            4556677778888888999999999999999987553

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.79  E-value=0.87  Score=44.21  Aligned_cols=85  Identities=16%  Similarity=0.155  Sum_probs=59.8

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhccc----------CCCChHH--------HHHHHHHHHHhHhHHHHHHHHhcCHHH
Q 011164          405 QGNTLFKAGKYARASKRYEKAVKYIEYD----------TSFGDEE--------KKQAKALKVACNLNNAACKLKLKDYKQ  466 (492)
Q Consensus       405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~----------~~~~~~~--------~~~~~~~~~~l~~N~a~~~lk~~~~~~  466 (492)
                      .|.-+++-|-+.+|...++.+|.-.+..          ...++.+        .-+..+..++.++-+|..+-.++++++
T Consensus       229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~  308 (478)
T KOG1129|consen  229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED  308 (478)
T ss_pred             HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence            4555566777777777777766543211          0111111        112245678899999999999999999


Q ss_pred             HHHHHHHHHhcCCCCccceeeee
Q 011164          467 AEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       467 ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      |++.+..||+++|.|+.|+--++
T Consensus       309 a~~lYk~vlk~~~~nvEaiAcia  331 (478)
T KOG1129|consen  309 ALQLYKLVLKLHPINVEAIACIA  331 (478)
T ss_pred             HHHHHHHHHhcCCccceeeeeee
Confidence            99999999999999999876554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=89.57  E-value=0.13  Score=37.73  Aligned_cols=32  Identities=25%  Similarity=0.121  Sum_probs=28.3

Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          458 KLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       458 ~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      +++.|+|++|+..+++++..+|+|..+++..+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la   32 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLA   32 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            46789999999999999999999998887643

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.24  E-value=0.36  Score=45.35  Aligned_cols=64  Identities=20%  Similarity=0.211  Sum_probs=50.7

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      |..+--+.-+++|..|.+.|.++++.               +.-.+..-+|-|+|++-+++-.+|+...+.+++.+|..
T Consensus       256 ~n~a~i~lg~nn~a~a~r~~~~i~~~---------------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  256 MNSAFLHLGQNNFAEAHRFFTEILRM---------------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhhhhheecccchHHHHHHHhhcccc---------------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            34444445678899999999888875               23346677899999999999999999999999999853

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=89.14  E-value=0.7  Score=44.39  Aligned_cols=85  Identities=12%  Similarity=0.049  Sum_probs=63.2

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc----------------CCCChHHH------HHHHHHHHHhHhHHH
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD----------------TSFGDEEK------KQAKALKVACNLNNA  455 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~----------------~~~~~~~~------~~~~~~~~~l~~N~a  455 (492)
                      .++.+--.|..++..+++..|...|++|+++....                ...+.+-.      -..++..+...+=+|
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA  234 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA  234 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            45566678999999999999999999999986431                11111111      233455666777789


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          456 ACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       456 ~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      ..++..++|.+|+......|...|.+.
T Consensus       235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         235 FAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            999999999999999999999888654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=89.06  E-value=0.063  Score=33.80  Aligned_cols=20  Identities=10%  Similarity=-0.134  Sum_probs=17.9

Q ss_pred             HHHHHhcCCCCccceeeeec
Q 011164          471 CTKVQQQKKFLLLPIFNIYA  490 (492)
Q Consensus       471 ~~~al~~dp~n~KA~~r~~~  490 (492)
                      |++||+++|+|..||++...
T Consensus         2 y~kAie~~P~n~~a~~nla~   21 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLAN   21 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHH
Confidence            78999999999999998754

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=89.04  E-value=1.9  Score=37.10  Aligned_cols=73  Identities=12%  Similarity=0.151  Sum_probs=54.7

Q ss_pred             CCCCChHHHH--HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCH
Q 011164          387 SWDMNTEEKI--EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY  464 (492)
Q Consensus       387 ~~~~~~~e~l--~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~  464 (492)
                      .|-....+.+  .....++..+..+...|+|..|+..+++++..               ++..-.+|.-+-.|+..+|++
T Consensus        48 ~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~---------------dP~~E~~~~~lm~~~~~~g~~  112 (146)
T PF03704_consen   48 EWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL---------------DPYDEEAYRLLMRALAAQGRR  112 (146)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---------------STT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHCcCH
Confidence            4444444433  34556777777888999999999999999987               555677888889999999999


Q ss_pred             HHHHHHHHHH
Q 011164          465 KQAEKLCTKV  474 (492)
Q Consensus       465 ~~ai~~~~~a  474 (492)
                      ..|++.+.+.
T Consensus       113 ~~A~~~Y~~~  122 (146)
T PF03704_consen  113 AEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988876

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.03  E-value=1.5  Score=43.10  Aligned_cols=66  Identities=17%  Similarity=0.174  Sum_probs=52.5

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      -...+...|-+-.|++||..|++.|.-               .+....+-.|+|+||.|+.=|+-+-+-..--|..-|++
T Consensus       154 qLSLAsvhYmR~HYQeAIdvYkrvL~d---------------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS  218 (557)
T KOG3785|consen  154 QLSLASVHYMRMHYQEAIDVYKRVLQD---------------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS  218 (557)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhc---------------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence            344566677888999999999999864               44567788899999999998888877777668887866


Q ss_pred             c
Q 011164          482 L  482 (492)
Q Consensus       482 ~  482 (492)
                      .
T Consensus       219 t  219 (557)
T KOG3785|consen  219 T  219 (557)
T ss_pred             H
Confidence            4

>PRK15331 chaperone protein SicA; Provisional

Probab=88.57  E-value=0.7  Score=40.59  Aligned_cols=61  Identities=13%  Similarity=0.158  Sum_probs=46.0

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      .|-.+=.+++|++|+..|..|..+-..+               ..-+...|.||+.+++...|+.++..|++. |.+
T Consensus        77 Laa~~Q~~k~y~~Ai~~Y~~A~~l~~~d---------------p~p~f~agqC~l~l~~~~~A~~~f~~a~~~-~~~  137 (165)
T PRK15331         77 LAAVCQLKKQFQKACDLYAVAFTLLKND---------------YRPVFFTGQCQLLMRKAAKARQCFELVNER-TED  137 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCC---------------CCccchHHHHHHHhCCHHHHHHHHHHHHhC-cch
Confidence            3334445789999999999988764332               222567999999999999999999999883 443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=88.55  E-value=2  Score=39.50  Aligned_cols=71  Identities=13%  Similarity=0.046  Sum_probs=50.8

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc-----------CHHHHHH
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-----------DYKQAEK  469 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~-----------~~~~ai~  469 (492)
                      ..-..|..+|+.++|..|+..|++-++.....            +....++..++.|++++.           ...+|+.
T Consensus        44 A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~------------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~  111 (203)
T PF13525_consen   44 AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS------------PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIE  111 (203)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------------cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHH
Confidence            34577889999999999999999999875542            123445556666666543           3568999


Q ss_pred             HHHHHHhcCCCCcc
Q 011164          470 LCTKVQQQKKFLLL  483 (492)
Q Consensus       470 ~~~~al~~dp~n~K  483 (492)
                      .++..++.-|++.-
T Consensus       112 ~~~~li~~yP~S~y  125 (203)
T PF13525_consen  112 EFEELIKRYPNSEY  125 (203)
T ss_dssp             HHHHHHHH-TTSTT
T ss_pred             HHHHHHHHCcCchH
Confidence            99999999998753

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=88.40  E-value=0.94  Score=49.44  Aligned_cols=91  Identities=15%  Similarity=0.046  Sum_probs=64.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC----------hHHHHHHHHHHHHh---------HhHHHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG----------DEEKKQAKALKVAC---------NLNNAACKL  459 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~----------~~~~~~~~~~~~~l---------~~N~a~~~l  459 (492)
                      +..+..++|.+|.+|++.+|.+....+++.-......-          .+..+.+......+         |.-+|--..
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            67788999999999999999999999998643211100          01112222222332         333555666


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          460 KLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       460 k~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      ++++|.+|+.++++||.++|.|.+-+|++.
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers  248 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERS  248 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            788999999999999999999998888764

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.34  E-value=4.6  Score=30.86  Aligned_cols=67  Identities=16%  Similarity=0.117  Sum_probs=51.2

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC------CCChHHHHHHHHHHHHhHhHHHHHHHHhc
Q 011164          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFGDEEKKQAKALKVACNLNNAACKLKLK  462 (492)
Q Consensus       396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~------~~~~~~~~~~~~~~~~l~~N~a~~~lk~~  462 (492)
                      .+.|-+.-++|-.+=..|+.++|+..|+++++.|....      ....+++.....++.....|+..+--++.
T Consensus         5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL~   77 (79)
T cd02679           5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRLQ   77 (79)
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45566667777777777999999999999999986532      23447788888888888888887766553

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.84  E-value=1.2  Score=27.30  Aligned_cols=29  Identities=24%  Similarity=0.339  Sum_probs=25.8

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKY  428 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~  428 (492)
                      ..+-..|..+.+.|++.+|+..|++++++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45667889999999999999999999987

...

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=87.67  E-value=5  Score=30.33  Aligned_cols=38  Identities=24%  Similarity=0.306  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc
Q 011164          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD  432 (492)
Q Consensus       395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~  432 (492)
                      .+..|..+..+|..+=+.|+|++|+..|.+|++.+...
T Consensus         4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~   41 (77)
T smart00745        4 YLSKAKELISKALKADEAGDYEEALELYKKAIEYLLEG   41 (77)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            35567778888888888999999999999999988653

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=87.57  E-value=0.8  Score=30.47  Aligned_cols=28  Identities=11%  Similarity=0.048  Sum_probs=24.5

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYI  429 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l  429 (492)
                      +...|..+...|++++|++.|+++++..
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~   31 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALD   31 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4567888899999999999999999873

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.49  E-value=3.3  Score=43.43  Aligned_cols=80  Identities=14%  Similarity=0.087  Sum_probs=60.9

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      +...+..+...|+|.+|++..++|++.+.......+...+........+..-+|.++..+|+-++|...+..+|..+|-+
T Consensus       178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D  257 (652)
T KOG2376|consen  178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD  257 (652)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence            45666777789999999999999988765432222222344555566677789999999999999999999999988754

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=87.47  E-value=2  Score=40.86  Aligned_cols=65  Identities=18%  Similarity=0.181  Sum_probs=53.7

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      .+.|.++|+.|+|.+|++.|+.+...+...         .--.+...++.++..|+.++++.+..+..|-+.+.
T Consensus       182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---------gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls  246 (247)
T PF11817_consen  182 LEMAEEYFRLGDYDKALKLLEPAASSYRRE---------GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS  246 (247)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            388999999999999999999997654321         12456778888999999999999999999887653

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.43  E-value=3.4  Score=31.26  Aligned_cols=35  Identities=23%  Similarity=0.062  Sum_probs=30.2

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  431 (492)
                      +.|..+-.+|+..=..|+|++|+..|..|+.++..
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            45667777888888899999999999999999765

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=87.35  E-value=0.31  Score=51.17  Aligned_cols=61  Identities=16%  Similarity=0.174  Sum_probs=47.5

Q ss_pred             HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcccee
Q 011164          411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIF  486 (492)
Q Consensus       411 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~  486 (492)
                      ..++|.+|+.+|+.|++.               ++-+..++..+|+.+.++++|+.....=.+-|+++|.+.--|+
T Consensus        87 ~dK~Y~eaiKcy~nAl~~---------------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~  147 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKI---------------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWI  147 (700)
T ss_pred             hhhhHHHHHHHHHHHHhc---------------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHH
Confidence            457899999999999987               3445777788888888888888888888888888877654443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=86.92  E-value=2.1  Score=36.72  Aligned_cols=69  Identities=10%  Similarity=0.103  Sum_probs=55.2

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcC---------------HHH
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD---------------YKQ  466 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~---------------~~~  466 (492)
                      ..+.|-.+|++++|..|+..|++-+++-...+.            ..-+++=+++|++++..               ...
T Consensus        50 qL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~------------vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~  117 (142)
T PF13512_consen   50 QLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN------------VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQ  117 (142)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC------------ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHH
Confidence            346777899999999999999999997433222            23455668888888876               899


Q ss_pred             HHHHHHHHHhcCCCCc
Q 011164          467 AEKLCTKVQQQKKFLL  482 (492)
Q Consensus       467 ai~~~~~al~~dp~n~  482 (492)
                      |..++.+++..-|++.
T Consensus       118 A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen  118 AFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHHHHCcCCh
Confidence            9999999999999875

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.87  E-value=0.36  Score=46.71  Aligned_cols=40  Identities=10%  Similarity=0.003  Sum_probs=19.4

Q ss_pred             HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceee
Q 011164          448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFN  487 (492)
Q Consensus       448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r  487 (492)
                      ..+|+|++.+..-.|++.-|.+++.-+|-.|++|..||.+
T Consensus       395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnN  434 (478)
T KOG1129|consen  395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNN  434 (478)
T ss_pred             hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHh
Confidence            4444444444444555555555555555555544444433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=86.42  E-value=2  Score=43.01  Aligned_cols=66  Identities=20%  Similarity=0.133  Sum_probs=50.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQ  475 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al  475 (492)
                      +.++-..|..++|.|++..-+..+++|+..--.       +    -.....+|+.++.+|+-+++|++|+++-..=|
T Consensus        17 CleLalEGERLck~gdcraGv~ff~aA~qvGTe-------D----l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDl   82 (639)
T KOG1130|consen   17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTE-------D----LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDL   82 (639)
T ss_pred             HHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-------H----HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhH
Confidence            567778999999999999999999999986321       1    34557778888888888888888877655433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=86.38  E-value=7.1  Score=33.49  Aligned_cols=76  Identities=21%  Similarity=0.148  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (492)
Q Consensus       394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~  473 (492)
                      ...+.+....+.....+..+++..+...+.+.+.-...            ........+.+|.+++..|+|++|+..+++
T Consensus         6 ~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~   73 (145)
T PF09976_consen    6 QQAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPS------------SPYAALAALQLAKAAYEQGDYDEAKAALEK   73 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34556667777777777888888887777776654322            224466778899999999999999999999


Q ss_pred             HHhcCCCC
Q 011164          474 VQQQKKFL  481 (492)
Q Consensus       474 al~~dp~n  481 (492)
                      ++...|++
T Consensus        74 ~~~~~~d~   81 (145)
T PF09976_consen   74 ALANAPDP   81 (145)
T ss_pred             HHhhCCCH
Confidence            99987543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=86.16  E-value=0.85  Score=40.57  Aligned_cols=59  Identities=17%  Similarity=0.094  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHh----------cCHHHHHHHHHHHHhcCCCCccc
Q 011164          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL----------KDYKQAEKLCTKVQQQKKFLLLP  484 (492)
Q Consensus       415 ~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~----------~~~~~ai~~~~~al~~dp~n~KA  484 (492)
                      |+.|.+.|+.....               ++.....++|=+.+++.+          .-+++|+.-+.+||.++|+...|
T Consensus         7 FE~ark~aea~y~~---------------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA   71 (186)
T PF06552_consen    7 FEHARKKAEAAYAK---------------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA   71 (186)
T ss_dssp             HHHHHHHHHHHHHH----------------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHHHh---------------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            45566666665543               334455566655555554          34788999999999999999999


Q ss_pred             eeee
Q 011164          485 IFNI  488 (492)
Q Consensus       485 ~~r~  488 (492)
                      +|..
T Consensus        72 lw~l   75 (186)
T PF06552_consen   72 LWCL   75 (186)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=85.76  E-value=0.54  Score=47.87  Aligned_cols=66  Identities=14%  Similarity=0.088  Sum_probs=58.2

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP  484 (492)
Q Consensus       405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA  484 (492)
                      ++-..+|.++|..|+.-..+|++.               ++..+.+|.-+|.+.+++++|.+|+.++.++..+.|+.++|
T Consensus        44 Ra~a~lK~e~~~~Al~Da~kaie~---------------dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~  108 (476)
T KOG0376|consen   44 RALAHLKVESFGGALHDALKAIEL---------------DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDA  108 (476)
T ss_pred             hhhhheeechhhhHHHHHHhhhhc---------------CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence            445667889999999998888876               57789999999999999999999999999999999998776


Q ss_pred             e
Q 011164          485 I  485 (492)
Q Consensus       485 ~  485 (492)
                      .
T Consensus       109 ~  109 (476)
T KOG0376|consen  109 T  109 (476)
T ss_pred             H
Confidence            4

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=85.74  E-value=0.94  Score=46.07  Aligned_cols=65  Identities=14%  Similarity=0.042  Sum_probs=50.9

Q ss_pred             HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       410 fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      +..++..+|++...++++...               ....++.-.|..+++.++|+.|+..++++.++.|++.++||..+
T Consensus       211 l~~~~E~~AI~ll~~aL~~~p---------------~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La  275 (395)
T PF09295_consen  211 LLMNEEVEAIRLLNEALKENP---------------QDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLA  275 (395)
T ss_pred             HhcCcHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            344556677777777774322               12667778899999999999999999999999999999998753

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=85.73  E-value=1.9  Score=27.71  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=26.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  431 (492)
                      +..+-..|+.++..|+|.+|...|++++.....
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   34 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRER   34 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence            456778899999999999999999999987543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=85.50  E-value=1.2  Score=41.77  Aligned_cols=66  Identities=18%  Similarity=0.138  Sum_probs=50.8

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+-..|-.+-+.|++..|...|.+++++...               ....++|++..++-.|+++.|......+-..-+.
T Consensus       136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---------------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a  200 (257)
T COG5010         136 AWNLLGAALDQLGRFDEARRAYRQALELAPN---------------EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA  200 (257)
T ss_pred             hhhHHHHHHHHccChhHHHHHHHHHHHhccC---------------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence            4457788889999999999999999998543               2566778888888888888888777776555443


Q ss_pred             C
Q 011164          481 L  481 (492)
Q Consensus       481 n  481 (492)
                      +
T Consensus       201 d  201 (257)
T COG5010         201 D  201 (257)
T ss_pred             c
Confidence            3

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=85.45  E-value=3.5  Score=43.61  Aligned_cols=60  Identities=30%  Similarity=0.224  Sum_probs=46.9

Q ss_pred             HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL  483 (492)
Q Consensus       409 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K  483 (492)
                      +...|+|++|+..-.+..+.+-               -+..++.-+|.+++++|++++|...+...|+.+|+|..
T Consensus        14 l~e~g~~~~AL~~L~~~~~~I~---------------Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~   73 (517)
T PF12569_consen   14 LEEAGDYEEALEHLEKNEKQIL---------------DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD   73 (517)
T ss_pred             HHHCCCHHHHHHHHHhhhhhCC---------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence            3456787777777665554432               24667778999999999999999999999999999863

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=84.99  E-value=4.2  Score=39.64  Aligned_cols=87  Identities=17%  Similarity=0.071  Sum_probs=57.8

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHH----------hcccCCCChHHH--------------HHHHHHHHHhHhH
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKY----------IEYDTSFGDEEK--------------KQAKALKVACNLN  453 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~----------l~~~~~~~~~~~--------------~~~~~~~~~l~~N  453 (492)
                      ....+-+.|..+.+.|=|.+|-..|......          |-.....+.|-.              ....-....+|+-
T Consensus       106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE  185 (389)
T COG2956         106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE  185 (389)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence            3455667788888888888888877654431          100000000101              1123455668888


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164          454 NAACKLKLKDYKQAEKLCTKVQQQKKFLLLP  484 (492)
Q Consensus       454 ~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA  484 (492)
                      +|..++...+.+.|+....+||+.||+++.|
T Consensus       186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA  216 (389)
T COG2956         186 LAQQALASSDVDRARELLKKALQADKKCVRA  216 (389)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhhCccceeh
Confidence            8888888999999999999999999998865

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.99  E-value=5.4  Score=37.10  Aligned_cols=75  Identities=19%  Similarity=0.300  Sum_probs=52.2

Q ss_pred             HHHHHHHhhhHHHHc--ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHH
Q 011164          398 AAGKKKEQGNTLFKA--GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQ  475 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~--~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al  475 (492)
                      .|.+.+..--+.|..  .++++|+..|++|-.++...         +.......|++-.|.-...+++|.+||..+.++.
T Consensus       111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva  181 (288)
T KOG1586|consen  111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA  181 (288)
T ss_pred             HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444344444443  68999999999999997642         2344556677777777778999999999999987


Q ss_pred             hcCCCC
Q 011164          476 QQKKFL  481 (492)
Q Consensus       476 ~~dp~n  481 (492)
                      ...-+|
T Consensus       182 ~~s~~n  187 (288)
T KOG1586|consen  182 RSSLDN  187 (288)
T ss_pred             HHhccc
Confidence            654333

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.41  E-value=0.79  Score=44.90  Aligned_cols=54  Identities=26%  Similarity=0.409  Sum_probs=43.2

Q ss_pred             hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (492)
Q Consensus       406 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a  474 (492)
                      |--.|.-|+|++|+..|+-+..-  .+             -...+..|+|-|++-+|.|.+|.....+|
T Consensus        64 a~C~fhLgdY~~Al~~Y~~~~~~--~~-------------~~~el~vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   64 AHCYFHLGDYEEALNVYTFLMNK--DD-------------APAELGVNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHhhccHHHHHHHHHHHhcc--CC-------------CCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            44568999999999999988762  11             12567899999999999999998877665

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.22  E-value=5  Score=42.14  Aligned_cols=72  Identities=21%  Similarity=0.228  Sum_probs=50.3

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHH-------------------HHHHHHHHHhHhHHHHHHHHhc
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK-------------------KQAKALKVACNLNNAACKLKLK  462 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~-------------------~~~~~~~~~l~~N~a~~~lk~~  462 (492)
                      +--+|..+|+.++|.+|+..|+..++--.   +..+++.                   .+..+--..+++|.|-.++-.+
T Consensus       113 l~L~AQvlYrl~~ydealdiY~~L~kn~~---dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g  189 (652)
T KOG2376|consen  113 LELRAQVLYRLERYDEALDIYQHLAKNNS---DDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENG  189 (652)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcc
Confidence            34578899999999999999998875311   1111111                   0011123457899999999999


Q ss_pred             CHHHHHHHHHHHHh
Q 011164          463 DYKQAEKLCTKVQQ  476 (492)
Q Consensus       463 ~~~~ai~~~~~al~  476 (492)
                      +|.+|++-..+|+.
T Consensus       190 ky~qA~elL~kA~~  203 (652)
T KOG2376|consen  190 KYNQAIELLEKALR  203 (652)
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999998888843

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=84.02  E-value=2.1  Score=47.95  Aligned_cols=85  Identities=14%  Similarity=0.069  Sum_probs=59.9

Q ss_pred             EEeeeeecccCCCCChH--HH----HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHh
Q 011164          377 ELVSFEKEKESWDMNTE--EK----IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVAC  450 (492)
Q Consensus       377 ~l~~~~~~~~~~~~~~~--e~----l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l  450 (492)
                      .+++.......|.+-.-  .+    ...-..+...|..+=+.|++++|...|+++|++               +...+.+
T Consensus        88 ~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---------------D~~n~~a  152 (906)
T PRK14720         88 NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA---------------DRDNPEI  152 (906)
T ss_pred             hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------------CcccHHH
Confidence            66666655555532110  11    112235667777777889999999999999997               3455788


Q ss_pred             HhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          451 NLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       451 ~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      ++|+|..|... +.++|+..+.+|+..
T Consensus       153 LNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        153 VKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            88888888888 888888888888755

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=83.27  E-value=7.7  Score=32.34  Aligned_cols=66  Identities=20%  Similarity=0.126  Sum_probs=52.1

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      ..+...|..+-..|++++|+...++++.-...            .+....+...+|+|...++++++|+..+-.+|--
T Consensus        39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~p~------------~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   39 RALIQLASTLRNLGRYDEALALLEEALEEFPD------------DELNAALRVFLALALYNLGRPKEALEWLLEALAE  104 (120)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            45567888888999999999999999864322            1234556677899999999999999999888753

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.22  E-value=2.3  Score=27.50  Aligned_cols=30  Identities=13%  Similarity=0.021  Sum_probs=26.2

Q ss_pred             HhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      .+|.-++-+.+..++|.+|+.++.++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            356778888889999999999999999885

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=82.77  E-value=4  Score=38.66  Aligned_cols=69  Identities=7%  Similarity=-0.019  Sum_probs=52.9

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc-----C-------------
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-----D-------------  463 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~-----~-------------  463 (492)
                      ....|..+|+.++|..|+..|++.++.....+.            ...++.-+|.|+..++     .             
T Consensus        72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~------------~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~  139 (243)
T PRK10866         72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------------IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQH  139 (243)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc------------hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHH
Confidence            568889999999999999999999998654322            2455666777765554     1             


Q ss_pred             HHHHHHHHHHHHhcCCCCc
Q 011164          464 YKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       464 ~~~ai~~~~~al~~dp~n~  482 (492)
                      -.+|+..+++.++.-|+..
T Consensus       140 ~~~A~~~~~~li~~yP~S~  158 (243)
T PRK10866        140 ARAAFRDFSKLVRGYPNSQ  158 (243)
T ss_pred             HHHHHHHHHHHHHHCcCCh
Confidence            2578899999999999764

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=82.22  E-value=2.2  Score=39.42  Aligned_cols=61  Identities=15%  Similarity=0.063  Sum_probs=50.1

Q ss_pred             hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       407 n~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      ..+++.+++..|.+.|.+|+.+...+               ..-+..++-...|.+++..|...+.++|++||.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w---------------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEW---------------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchh---------------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            34578899999999999999875433               44556677778889999999999999999999664

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=81.58  E-value=4.3  Score=36.47  Aligned_cols=66  Identities=20%  Similarity=0.287  Sum_probs=52.8

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .....||.+-..|+|.+|...|++++.-+-              .....+++-+|.+++.++++..|....++..+.+|.
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qalsG~f--------------A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALSGIF--------------AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhcccc--------------CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence            344678889999999999999999996431              112567788899999999999999999888888764

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=80.59  E-value=6.2  Score=39.09  Aligned_cols=81  Identities=15%  Similarity=0.235  Sum_probs=60.4

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-----------CCh----H--------HH-----HHHHHHHHH
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-----------FGD----E--------EK-----KQAKALKVA  449 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-----------~~~----~--------~~-----~~~~~~~~~  449 (492)
                      ...+..+.|..+|...++.+|+..|++.|.-++....           ..+    +        +.     -+-..++..
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455668899999999999999999999987753210           000    0        00     111345667


Q ss_pred             hHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          450 CNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       450 l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      .|.|+|..+-++.+|.+++.+|+-.+.+-
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lp  113 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLP  113 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Confidence            89999999999999999999999998874

>smart00028 TPR Tetratricopeptide repeats

Probab=80.48  E-value=2.2  Score=24.58  Aligned_cols=28  Identities=36%  Similarity=0.529  Sum_probs=24.2

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKY  428 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~  428 (492)
                      .+...|..++..++|..|+..|+++++.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            3456788999999999999999999875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.42  E-value=7.3  Score=36.55  Aligned_cols=30  Identities=20%  Similarity=0.216  Sum_probs=22.0

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  431 (492)
                      ..+++-...+.-+.++|++.|++++.+++.
T Consensus       113 aleKAak~lenv~Pd~AlqlYqralavve~  142 (308)
T KOG1585|consen  113 ALEKAAKALENVKPDDALQLYQRALAVVEE  142 (308)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence            334555555667788999999999988765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	492
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		1e-148
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		1e-145
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		2e-30
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		3e-37
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		3e-36
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		8e-35
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		4e-34
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		1e-23
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		1e-12
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		4e-33
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		7e-33
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		1e-26
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		7e-13
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		7e-29
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		2e-09
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		5e-28
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		2e-12
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		5e-27
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		4e-13
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		7e-27
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		2e-13
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		7e-27
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		2e-13
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		7e-26
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		1e-12
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		8e-26
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		1e-12
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		1e-25
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		1e-12
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		1e-25
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		1e-12
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		8e-25
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		7e-09
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		1e-24
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		2e-09
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		2e-24
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		3e-05
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		2e-24
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		1e-06
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		3e-24
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		7e-09
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		3e-24
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		7e-09
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-24
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-06
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-24
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		9e-07
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		5e-24
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-06
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		5e-24
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		9e-09
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		5e-24
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-06
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		5e-24
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		2e-08
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		7e-24
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		1e-06
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		9e-24
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		3e-08
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		1e-23
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		8e-06
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		1e-23
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		4e-08
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		2e-23
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		2e-08
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		2e-23
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		9e-09
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		2e-23
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		3e-08
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-23
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-06
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		8e-23
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		1e-08
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		2e-22
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		4e-05
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		2e-22
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		4e-09
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		2e-22
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		2e-08
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		6e-21
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		1e-09
4dz2_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		7e-21
4dz2_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		1e-04
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		5e-20
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		3e-10
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		5e-20
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		3e-10
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		7e-18
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		2e-13
1q6h_A	224	Crystal Structure Of A Truncated Form Of Fkpa From		4e-17
1q6u_A	245	Crystal Structure Of Fkpa From Escherichia Coli Len		4e-17
1jvw_A	167	Trypanosoma Cruzi Macrophage Infectivity Potentiato		5e-17
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		8e-17
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		1e-12
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		3e-15
1u79_A	129	Crystal Structure Of Atfkbp13 Length = 129		7e-14
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		1e-11
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		3e-06
4dip_A	125	Crystal Structure Of Human Peptidyl-Prolyl Cis-Tran		2e-11
1fd9_A	213	Crystal Structure Of The Macrophage Infectivity Pot		3e-10
2uz5_A	137	Solution Structure Of The Fkbp-Domain Of Legionella		5e-10
3oe2_A	219	1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Tran		3e-07
2f2d_A	121	Solution Structure Of The Fk506-Binding Domain Of H		3e-07
2f2d_A	121	Solution Structure Of The Fk506-Binding Domain Of H		6e-04
2awg_A	118	Structure Of The Ppiase Domain Of The Human Fk506-B		4e-07
2awg_A	118	Structure Of The Ppiase Domain Of The Human Fk506-B		7e-04
2d9f_A	135	Solution Structure Of Ruh-047, An Fkbp Domain From		3e-06
2d9f_A	135	Solution Structure Of Ruh-047, An Fkbp Domain From		4e-04
2jwx_A	157	Solution Structure Of The N-Terminal Domain Of Huma		3e-06
2jwx_A	157	Solution Structure Of The N-Terminal Domain Of Huma		5e-04
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		1e-05
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		6e-04
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		2e-05
4dt4_A	169	Crystal Structure Of The Ppiase-Chaperone Slpa With		5e-04

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score =  521 bits (1343), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 269/363 (74%), Positives = 293/363 (80%), Gaps = 2/363 (0%)
Query: 27  KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
           KVGEE EIG Q            WDTPE GDEVEVHYTGTLLDG +FDSSRDR   FKF 
Sbjct: 17  KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 76
Query: 87  LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
           LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 77  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 136
Query: 147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                              WENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 137 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 196
Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G  GAVPPNA+L I LELVSWKTV+EI
Sbjct: 197 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 256
Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH E+E  FEFKTDEE 
Sbjct: 257 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEP-FEFKTDEEA 315
Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
           VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+KE
Sbjct: 316 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKDKE 374
Query: 387 SWD 389
           SWD
Sbjct: 375 SWD 377

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  511 bits (1316), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 264/358 (73%), Positives = 288/358 (80%), Gaps = 2/358 (0%)
Query: 27  KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
           KVGEE EIG Q            WDTPE GDEVEVHYTGTLLDG +FDSSRDR   FKF 
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60
Query: 87  LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
           LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 120
Query: 147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                              WENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 121 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 180
Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G  GAVPPNA+L I LELVSWKTV+EI
Sbjct: 181 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 240
Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH E+E  FEFKTDEE 
Sbjct: 241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEP-FEFKTDEEA 299
Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
           VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+
Sbjct: 300 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKD 356

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 121/230 (52%), Gaps = 17/230 (7%)
Query: 166 WENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKV 221
           W+ P+  DEV V+Y   L DG     +    D  +F +  G       + +KTMKKGE  
Sbjct: 24  WDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENA 83
Query: 222 LLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD 281
           L  + P+  +GE     SG+   +P NATLQ  +EL+SW +V +I  D  + KKILKEGD
Sbjct: 84  LFTIPPELAYGE-----SGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGD 138
Query: 282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN 341
            +E P +   V VK   +L+DGTV  K       +  EF   +  +   L +AV TMKK 
Sbjct: 139 KWENPKDPDEVFVKYEARLEDGTVVSKS------EGVEFTVKDGHLCPALAKAVKTMKKG 192
Query: 342 EVALLTIAPEYAFG--SAESQQELAVVPPNSTVHYEVELVSFEKEKESWD 389
           E  LL + P+Y FG     +  E   VPPN+++  ++ELVS++   E  D
Sbjct: 193 EKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGD 242

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  152 bits (385), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 161/313 (51%), Gaps = 19/313 (6%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKADGVE----FTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D V V+Y  +L +G     +        F++  G         V TMKKGE   
Sbjct: 45  ETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICH 104
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
           L  KP+Y +G     A+G+   +P NATL   +EL+ +K   ++ +D  +I++  + G+G
Sbjct: 105 LLCKPEYAYG-----ATGSLPKIPSNATLFFEVELLDFKG-EDLLEDGGIIRRTKRRGEG 158
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
           +  PNEGA V++ L G+   G VF  +     +  F     E+  I  G+D+A+  M++ 
Sbjct: 159 YSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 212
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXX 401
           E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK KESW+M+T         
Sbjct: 213 EQCILHLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAI 270
Query: 402 XXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
              +G   FK GKY +A  +Y K V ++E +    ++E K +++  +A  LN A C LKL
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 462 KDYKQAEKLCTKV 474
           ++Y +A + C K 
Sbjct: 331 REYTKAVECCDKA 343

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  149 bits (377), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 164/313 (52%), Gaps = 19/313 (6%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKADGVE----FTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D+V V+Y+ +L +G     +        F++  G         V TMK+GE   
Sbjct: 45  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICH 104
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
           L  KP+Y +G     ++G+   +P NATL   +EL+ +K   ++ +D  +I++  ++G+G
Sbjct: 105 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEG 158
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
           +  PNEGA V++ L G+   G +F  +     +  F     E+  I  G+D+A+  M++ 
Sbjct: 159 YSNPNEGATVEIHLEGRC-GGRMFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 212
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXX 401
           E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK KESW+M+T         
Sbjct: 213 EQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAI 270
Query: 402 XXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
              +G   FK GKY +A  +Y K V ++E +    ++E K +++  +A  LN A C LKL
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 462 KDYKQAEKLCTKV 474
           ++Y +A + C K 
Sbjct: 331 REYTKAVECCDKA 343

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 79/214 (36%), Positives = 128/214 (59%), Gaps = 13/214 (6%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           S + +D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIG 70
Query: 324 EEQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
           E + +D   GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L S
Sbjct: 71  EGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKS 128
Query: 381 FEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
           FEK KESW+MN+            +G   FK GKY +A  +Y+K V ++EY++SF +EE 
Sbjct: 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188
Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           ++A+AL++A +LN A C LKL+ +  A + C K 
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score =  142 bits (359), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/218 (40%), Positives = 118/218 (54%), Gaps = 10/218 (4%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVXXXXXXXXXXXXXXXXXXXWENPK 170
               PE AYG +GS P IP NATL F++ELL +                      + NP 
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPN 167
Query: 171 DLDEVLVNYEARLEDGMVVGKADGVEFTVKDG--HFCPT-LAKAVKTMKKGEKVLLAVKP 227
           +   V ++ E R    M       V FTV +G  H  P  + KA++ M++ E+ +L + P
Sbjct: 168 EGATVEIHLEGRCGGRMF--DCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGP 225
Query: 228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
           +YGFGE GK   G    + PNA L   + L S++   E
Sbjct: 226 RYGFGEAGKPKFG----IEPNAELIYEVTLKSFEKAKE 259

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 19/230 (8%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKADGVE----FTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D+V V+Y+ +L +G     +        F++  G         V TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
           L  KP+Y +G     ++G+   +P NATL   +EL+ +K   ++ +D  +I++  ++G+G
Sbjct: 109 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEG 162
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
           +  PNEGA V++ L G+   G +F  +     +  F     E+  I  G+D+A+  M++ 
Sbjct: 163 YSNPNEGATVEIHLEGRC-GGRMFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 216
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
           E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK KESW+M+
Sbjct: 217 EQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMD 264

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score =  139 bits (350), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 128/214 (59%), Gaps = 13/214 (6%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           S + +D  +I++I   G+G+ +PNEGA+V+V L G  +D  +F       +++   F+  
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKD-KLF-------DQRELRFEIG 70
Query: 324 EEQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
           E + +D   GL+RA+   +K E +++ + P YAFGS    +E   +PPN+ + YE+ L S
Sbjct: 71  EGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKS 128
Query: 381 FEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
           FEK KESW+ N+            +G   FK GKY +A  +Y+K V ++EY++SF +EE 
Sbjct: 129 FEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188
Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           ++A+AL++A +LN A C LKL+ +  A + C K 
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score =  138 bits (347), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 112/219 (51%), Gaps = 10/219 (4%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI I TMK GE   
Sbjct: 65  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 124
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV-XXXXXXXXXXXXXXXXXXXWENP 169
            T  PE AYG +GSPP IPPNATL F+VEL  +                       +  P
Sbjct: 125 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKP 184
Query: 170 KDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVK 226
            +   V V  E   +D +   +   + F + +G        L +A++ M+KGE  ++ +K
Sbjct: 185 NEGAIVEVALEGYYKDKLFDQRE--LRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLK 242
Query: 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
           P Y FG  GK        +PPNA L+  L L S++   E
Sbjct: 243 PSYAFGSVGKEKF----QIPPNAELKYELHLKSFEKAKE 277

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 126/232 (54%), Gaps = 25/232 (10%)
Query: 167 ENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D V V+Y   L DG      + + D   F +  G        A+ TMK GE   
Sbjct: 65  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 124
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITD--DKKVIKKILKEG 280
           +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++T+  D  +I++I   G
Sbjct: 125 ITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRG 178
Query: 281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID---GLDRAVIT 337
           +G+ +PNEGA+V+V L G  +D  +F       +++   F+  E + +D   GL+RA+  
Sbjct: 179 EGYAKPNEGAIVEVALEGYYKD-KLF-------DQRELRFEIGEGENLDLPYGLERAIQR 230
Query: 338 MKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWD 389
           M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L SFEK KESW+
Sbjct: 231 MEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKSFEKAKESWE 280

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 50  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 107
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 108 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 160

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score =  125 bits (313), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 66/90 (73%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G +V VHY G   DG QFDSSR R  PF+FTLG G VIKGWD G+ TM  GE A+FT
Sbjct: 40  PQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT 99
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IP +LAYGE G PP IPP ATL F+VELL+
Sbjct: 100 IPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 274 KKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDR 333
           KK+L  GDG  +P  G  V V   G+  DG  F         + F+F     +VI G D+
Sbjct: 28  KKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQF--DSSRSRGKPFQFTLGAGEVIKGWDQ 85
Query: 334 AVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
            V TM   E AL TI  + A+G    +    V+PP +T+ +EVEL++
Sbjct: 86  GVATMTLGEKALFTIPYQLAYG---ERGYPPVIPPKATLVFEVELLA 129

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 68/93 (73%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V+VHY GTL +GT+FDSSRDR   F F LG+GNVIKGWD+G+ TM KGE A FT
Sbjct: 30  PTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT 89
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
           I  +  YG++GSPP IP  ATL F+VEL  W++
Sbjct: 90  IRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA 122

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D  V+K I KEG G  +P  G  VKV  +G L++GT F      +    F F      VI
Sbjct: 13  DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKF--DSSRDRGDQFSFNLGRGNVI 70
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESW 388
            G D  V TM K EVA  TI  +Y +G A S  +   +P  +T+ +EVEL  +  E  S 
Sbjct: 71  KGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPK---IPGGATLIFEVELFEWSAEDISP 127
Query: 389 DMN 391
           D +
Sbjct: 128 DRD 130

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 65/93 (69%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI + TMK GE   
Sbjct: 44  ETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCR 103
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 104 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 136

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 29  DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 86
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D AV TMK  E+  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 87  KAWDIAVATMKVGELCRITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 139

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score =  118 bits (296), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 64/93 (68%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI I TMK GE   
Sbjct: 45  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 104
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 105 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 137

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 30  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 87
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 88  KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 140

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score =  118 bits (296), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 64/93 (68%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI I TMK GE   
Sbjct: 49  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 109 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 141

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 34  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 92  KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 144

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score =  115 bits (287), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score =  114 bits (286), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 33  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 92
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 93  LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 75
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 76  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 128

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 33  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 92
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 93  LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 75
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 76  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 128

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score =  111 bits (278), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 59/89 (66%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTGTL DG  FDSSR R  PF+FT+G+G VI+GWD G+  M  G+ A   
Sbjct: 17  PKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLV 76
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
             P+ AYG  G P  IPPNATL FDVELL
Sbjct: 77  CSPDYAYGSRGHPGVIPPNATLTFDVELL 105

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L  GD    P  G V  V   G L DG VF         + F F     +VI G D  V 
Sbjct: 8   LAAGDEATYPKAGQVAVVHYTGTLADGKVF--DSSRTRGKPFRFTVGRGEVIRGWDEGVA 65
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A L  +P+YA+G   S+    V+PPN+T+ ++VEL+  E
Sbjct: 66  QMSVGQRAKLVCSPDYAYG---SRGHPGVIPPNATLTFDVELLRVE 108

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPPNATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPNATLIFDVELL 104

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFVLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PPN+T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPNATLIFDVELLKLE 107

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/89 (58%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ GD V +HYTGTL +G +FDSS DR +PF+  +G G VIKGWD+GI  +  GE A  T
Sbjct: 22  PKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT 81
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           IP   AYG  G P  IPPN+TL FDVELL
Sbjct: 82  IPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEF 320
           SE+ +    I +I   GDG   P  G +V +   G L++G  F   V +G       F+ 
Sbjct: 1   SEVIEGNVKIDRI-SPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSP-----FQC 54
Query: 321 KTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
                QVI G D  +  +   E A LTI   YA+G    +    ++PPNST+ ++VEL+
Sbjct: 55  NIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYG---PRGFPGLIPPNSTLVFDVELL 110

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 61/86 (70%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G+VIKGWD G++ MK G     TIPP
Sbjct: 26  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIPP 85
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 86  QLGYGARGAGGVIPPNATLVFEVELL 111

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 15  LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGHVIKGWDEGVQ 71
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 72  GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 111

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAAGVIPPNATLVFEVELL 207

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 248 NATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFV 307
           N  ++   E +   TV  +T +  +  + L EG G E    G  V V   G L DG  F 
Sbjct: 84  NDIIEAHREQIGGSTV--VTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKF- 139
Query: 308 KKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVP 367
                +    F F      VI G D  V  MK   V  LTI P+  +G   ++    V+P
Sbjct: 140 -DSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYG---ARGAAGVIP 195
Query: 368 PNSTVHYEVELV 379
           PN+T+ +EVEL+
Sbjct: 196 PNATLVFEVELL 207

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 61/86 (70%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF+F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 248 NATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFV 307
           N  ++   E +   TV  +T +  +  + L EG G E    G  V V   G L DG  F 
Sbjct: 84  NDIIEAHREQIGGSTV--VTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKF- 139
Query: 308 KKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVP 367
                +    FEF      VI G D  V  MK   V  LTI P+  +G+  +     V+P
Sbjct: 140 -DSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIP 195
Query: 368 PNSTVHYEVELV 379
           PN+T+ +EVEL+
Sbjct: 196 PNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 248 NATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFV 307
           N  ++   E +   TV  +T +  +  + L EG G E    G  V V   G L DG  F 
Sbjct: 84  NDIIEAHREQIGGSTV--VTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKF- 139
Query: 308 KKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVP 367
                +    F F      VI G D  V  MK   V  LTI P+  +G+  +     V+P
Sbjct: 140 -DSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIP 195
Query: 368 PNSTVHYEVELV 379
           PN+T+ +EVEL+
Sbjct: 196 PNATLVFEVELL 207

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKAGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 207

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 18  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 77
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 78  ISPDYAYGATGHPGIIPPHATLVFDVELL 106

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  
Sbjct: 7   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEG 64
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 109

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score =  108 bits (270), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 30  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 89
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 90  QLGYGARGAGGVIPPNATLVFEVELL 115

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 262 TVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFK 321
           +++ +T +  +  + L EG G E    G  V V   G L DG  F      +    F F 
Sbjct: 4   SMTVVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFV 60
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
                VI G D  V  MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 61  LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 115

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score =  108 bits (269), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW  G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G    
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWQEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 46  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 105
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 106 QLGYGARGAGGVIPPNATLVFEVELL 131

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 35  LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 91
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 92  GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 131

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW  G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G    
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWAEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG + DSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQ--LFEFKTDEEQVIDGLDRA 334
           +  GDG   P  G    V   G L+DG    KK  S  ++   F+F   +++VI G +  
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDG----KKMDSSRDRNKPFKFMLGKQEVIRGWEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRD++ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGVPGIIPPHATLVFDVELL 104

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      ++ + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDKNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGVP---GIIPPHATLVFDVELLKLE 107

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG + DSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQ--LFEFKTDEEQVIDGLDRA 334
           +  GDG   P  G    V   G L+DG    KK  S  ++   F+F   +++VI G +  
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDG----KKVDSSRDRNKPFKFMLGKQEVIRGWEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 59/86 (68%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +F SS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 248 NATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFV 307
           N  ++   E +   TV  +T +  +  + L EG G E    G  V V   G L DG  F 
Sbjct: 84  NDIIEAHREQIGGSTV--VTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKF- 139
Query: 308 KKGHSEEEQ-LFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVV 366
             G S++    F F      VI G D  V  MK   V  LTI P+  +G+  +     V+
Sbjct: 140 --GSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVI 194
Query: 367 PPNSTVHYEVELV 379
           PPN+T+ +EVEL+
Sbjct: 195 PPNATLVFEVELL 207

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score =  105 bits (261), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+G++ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGFEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           GD + +HYTG L DGT+FDSS  ++ PF F+LG G VIKGWD G+  M +GE     IP 
Sbjct: 9   GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 68
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           EL YGE G+PP IP  ATL F+VELL
Sbjct: 69  ELGYGERGAPPKIPGGATLVFEVELL 94

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 287 NEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346
            +G V+ +   GKL+DGT F       + Q F F     QVI G D+ ++ M + E   L
Sbjct: 7   RKGDVLHMHYTGKLEDGTEF--DSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKL 64
Query: 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
            I  E  +G   +  +   +P  +T+ +EVEL+  E+  E
Sbjct: 65  VIPSELGYGERGAPPK---IPGGATLVFEVELLKIERRTE 101

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+G + G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI GL+  
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGLEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 62/91 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L +G +FDSSRDR+ PFKF +G+  VIKG++ G   M  G+ A  T
Sbjct: 16  PKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143
             P++AYG +G P  IPPNATL FDVELL+ 
Sbjct: 76  CTPDVAYGATGHPGVIPPNATLIFDVELLNL 106

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P +G    V   G LQ+G  F      +  + F+F+  +++VI G +    
Sbjct: 7   ISPGDGRTFPKKGQTCVVHYTGMLQNGKKF--DSSRDRNKPFKFRIGKQEVIKGFEEGAA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LT  P+ A+G+        V+PPN+T+ ++VEL++ E
Sbjct: 65  QMSLGQRAKLTCTPDVAYGATGHP---GVIPPNATLIFDVELLNLE 107

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 51  DTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
           + P+ G+EV VHY G L   G  FDSSR+R+ PFKF LGQG VIKGWDI + +M K E  
Sbjct: 31  NAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKC 90
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
              +  +  YGE G   +IP N+ L F++EL+S+
Sbjct: 91  SVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 266 ITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFKT 322
           +T+D  V+K IL++G+G E   P +G  V V  +GKL+  G VF      E    F+F  
Sbjct: 11  LTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVF--DSSRERNVPFKFHL 68
Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +VI G D  V +M KNE   + +  +Y +G     +    +P NS + +E+EL+SF
Sbjct: 69  GQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGES---IPGNSVLIFEIELISF 124

>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 26  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 85
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 86  QLGYGAGGAGGVIPPNATLVFEVELL 111

>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 15  LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 71
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+       +     V+PPN+T+ +EVEL+
Sbjct: 72  GMKVGGVRRLTIPPQLG---YGAGGAGGVIPPNATLVFEVELL 111

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 51  DTPENGDEVEVHYTGTLLD-GTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
           + P+ G+EV VHY G L   G  FDSS DR+ PFKF L QG VIKGWDI + +M+K E  
Sbjct: 32  NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKC 91
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           +  I     YG+ G   +IP N+ L F++ELLS+
Sbjct: 92  LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFK 321
           E+T D  VIK ILK+GD  E   P +G  V V  +GKL+  G VF      +    F+F 
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVF--DSSFDRNVPFKFH 68
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            ++ +VI G D  V +M+KNE  L+ I   Y +G     +    +P NS + +E+EL+SF
Sbjct: 69  LEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGES---IPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 51  DTPENGDEVEVHYTGTLLD-GTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
           + P+ G+EV VHY G L   G  FDSS DR+ PFKF L QG VIKGWDI + +M+K E  
Sbjct: 32  NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKC 91
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           +  I     YG+ G   +IP N+ L F++ELLS+
Sbjct: 92  LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFK 321
           E+T D  VIK ILK+GD  E   P +G  V V  +GKL+  G VF      +    F+F 
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVF--DSSFDRNVPFKFH 68
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            ++ +VI G D  V +M+KNE  L+ I   Y +G     +    +P NS + +E+EL+SF
Sbjct: 69  LEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGES---IPGNSVLLFEIELLSF 125

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSS-------RDRSTPFKFTLGQGNVIKGWDIGIKTMKK 105
           P+ GD V   YTGTL DGT FD++       +  + P  F +G G VI+GWD  + TM K
Sbjct: 17  PKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 76
Query: 106 GENAVFTIPPELAYGESGSPPT-IPPNATLQFDVELL 141
           GE A   I PE AYG+ G P   IPPNA L F+VEL+
Sbjct: 77  GEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTDEE 325
           K  K +LK+GD    P +G VV     G LQDGTVF           +  +   FK    
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61
Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +VI G D A++TM K E A L I PE+A+G  +  Q  A +PPN+ + +EVELV  +
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDAKIPPNAKLTFEVELVDID 116

>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From Escherichia Coli Length = 224

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW  G+K +KKG    
Sbjct: 134 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIK 191
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             IPPELAYG++G  P IPPN+TL FDVELL
Sbjct: 192 LVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221

>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli Length = 245

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW  G+K +KKG    
Sbjct: 134 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIK 191
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             IPPELAYG++G  P IPPN+TL FDVELL
Sbjct: 192 LVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221

>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator (Tcmip) Length = 167

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 52  TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF 111
            P   D+ EVHYTG L DGT FDSSR+R  P  F   +  VIKGW   ++ M++G+    
Sbjct: 52  APAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNE--VIKGWTEALQLMREGDRWRL 109
Query: 112 TIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            IP +LAYG +G    IPP + L+FDVEL+S
Sbjct: 110 FIPYDLAYGVTGGGGMIPPYSPLEFDVELIS 140

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 57/97 (58%), Gaps = 8/97 (8%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRST-------PFKFTLGQGNVIKGWDIGIKTMKK 105
           P+ GD V   YTGTL DGT FD++   S+       P  F +G G VI+GWD  + TM K
Sbjct: 20  PKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 79
Query: 106 GENAVFTIPPELAYGESGSPPT-IPPNATLQFDVELL 141
           GE A   I PE AYG+ G P   IPPN  L F+VEL+
Sbjct: 80  GEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELV 116

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTDEE 325
           K  K ILK+GD    P +G VV     G L DGTVF           +  +   FK    
Sbjct: 5   KYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVG 64
Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +VI G D A++TM K E A L I PE+A+G  +  Q  A +PPN+ + +EVELV  +
Sbjct: 65  KVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDAKIPPNTKLIFEVELVDID 119

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 19/243 (7%)
Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
           S    EG VPP              + +E+ D+K V K+I+KEG G  +P++ +   +  
Sbjct: 28  SEPSQEGNVPPKVD-----------SEAEVLDEK-VSKQIIKEGHG-SKPSKYSTCFLHY 74
Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
               ++     +    E++ +      E++ + GL   V +MK  E AL+ +  E A+G 
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKE---SWDMNTXXXXXXXXXXXXQGNTLFKAG 413
            E       VPP + + YEVE++ F++ KE     DM               GN+LFK  
Sbjct: 135 -EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEE 193
Query: 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA--CNLNNAACKLKLKDYKQAEKLC 471
           K   A ++YE A+ Y+  D  F    K Q  AL V   C+LN AAC +KLK Y +A   C
Sbjct: 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253
Query: 472 TKV 474
             V
Sbjct: 254 NIV 256

>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13 Length = 129

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDI------GIKTMKKGENA 109
           G  ++ HY G L +G  FDSS +R  P  F +G G VIKGWD       GI  M  G   
Sbjct: 30  GQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKR 89
Query: 110 VFTIPPELAYGESGS-----PPTIPPNATLQFDVELL 141
              IPPELAYG+ G+        IPP + L FD+E +
Sbjct: 90  TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 59  VEVHYTGTLLDGTQ-FDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117
           V V Y+G L    + FDS+  R TP    LG+   + G ++G+ +M++GE A F   P  
Sbjct: 47  VLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNY 106
Query: 118 AYGESGSPPTIPPNATLQFDVELLSW 143
           AYG  G PP IPPN T+ F++ELL +
Sbjct: 107 AYGTLGCPPLIPPNTTVLFEIELLDF 132

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 19/124 (15%)
Query: 265 EITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQ------DGTVFVKKGHSEEEQL 317
           +I+ D+ V+K +++EG G    P+  A V VK  G L+      D   F K         
Sbjct: 21  DISGDRGVLKDVIREGAGDLVAPD--ASVLVKYSGYLEHMDRPFDSNYFRKTPRL----- 73
Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
              K  E+  + G++  +++M++ E+A     P YA+G+        ++PPN+TV +E+E
Sbjct: 74  --MKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCP---PLIPPNTTVLFEIE 128
Query: 378 LVSF 381
           L+ F
Sbjct: 129 LLDF 132

>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans Isomerase Fkbp14 Length = 125

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 54  ENGDEVEVHYTGTL-LDGTQFDSSR--DRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + GD + VHY G L  DG+ F S+   +   P  FTLG    +KGWD G+K M  GE   
Sbjct: 30  KGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRK 89
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             IPP L YG+ G    IPP +TL F+++LL
Sbjct: 90  LIIPPALGYGKEGK-GKIPPESTLIFNIDLL 119

>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity Potentiator Protein (Mip) A Major Virulence Factor From Legionella Pneumophila Length = 213

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P   D V V YTG L+DGT FDS+     P  F + Q  VI GW   ++ M  G      
Sbjct: 121 PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWTEALQLMPAGSTWEIY 178
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           +P  LAYG       I PN TL F + L+S
Sbjct: 179 VPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella Pneumophila Mip Length = 137

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P   D V V YTG L+DGT FDS+     P  F + Q  VI GW   ++ M  G      
Sbjct: 45  PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWTEALQLMPAGSTWEIY 102
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           +P  LAYG       I PN TL F + L+S
Sbjct: 103 VPSGLAYGPRSVGGPIGPNETLIFKIHLIS 132

>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato Str. Dc3000 (Pspto Dc3000) Length = 219

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+    VEV Y G L DG  FD S   + P  F L   +VI GW   ++ M  G      
Sbjct: 132 PDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRLV 186
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IP + AYG  G+   I P   L F++EL++
Sbjct: 187 IPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human Fkbp38 Length = 121

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 28  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 83
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVEL 140
              +  YG  G  P IPP+A L  +V L
Sbjct: 84  ADSKYCYGPQGRSPYIPPHAALCLEVTL 111

>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human Fkbp38 Length = 121

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 15  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 68
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G    Q     +PP++ +  EV L
Sbjct: 69  LSVPLMDVGETAMVTADSKYCYG---PQGRSPYIPPHAALCLEVTL 111

>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding Protein 8 Length = 118

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 30  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 85
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVEL 140
              +  YG  G  P IPP+A L  +V L
Sbjct: 86  ADSKYCYGPQGRSPYIPPHAALCLEVTL 113

>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding Protein 8 Length = 118

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 17  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 70
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G    Q     +PP++ +  EV L
Sbjct: 71  LSVPLMDVGETAMVTADSKYCYG---PQGRSPYIPPHAALCLEVTL 113

>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human Cdna Length = 135

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 34  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 89
Query: 113 IPPELAYGESGS-PPTIPPNATLQFDVEL 140
              +  YG  GS  P IPP+A L  +V L
Sbjct: 90  ADSKYCYGPQGSRSPYIPPHAALCLEVTL 118

>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human Cdna Length = 135

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 21  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 74
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G   S+     +PP++ +  EV L
Sbjct: 75  LSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTL 118

>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Fkbp38 (Fkbp38ntd) Length = 157

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 60  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 115
Query: 113 IPPELAYGESGS-PPTIPPNATLQFDVEL 140
              +  YG  GS  P IPP+A L  +V L
Sbjct: 116 ADSKYCYGPQGSRSPYIPPHAALCLEVTL 144

>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Fkbp38 (Fkbp38ntd) Length = 157

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 47  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 100
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G   S+     +PP++ +  EV L
Sbjct: 101 LSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTL 144

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 72  QFDSSRDRSTPFKFTLG-QGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESG--SPPTI 128
           +F+ +     P +  LG +   + G  IG+ +MK GE A+  +  ELAYG+ G  S P +
Sbjct: 84  KFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNV 143
Query: 129 PPNATLQFDVELLSW 143
           PP A L ++VE++ +
Sbjct: 144 PPMADLLYEVEVIGF 158

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
           S    EG VPP    +           +E+ D+K V K+I+KEG G  +P++ +   +  
Sbjct: 28  SEPSQEGNVPPKVDSE-----------AEVLDEK-VSKQIIKEGHG-SKPSKYSTCFLHY 74
Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
               ++     +    E++ +      E++ + GL   V +MK  E AL+ +  E A+G 
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKE 386
            E       VPP + + YEVE++ F++ KE
Sbjct: 135 -EGNFSFPNVPPMADLLYEVEVIGFDETKE 163

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFG-DEEKKQAKALKVACNLNNAACKLKLKDY 464
           GNT FK+  +  A K+Y K ++Y+E   +   D +  + + + ++C LN  ACKLK+ D+
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW 289
Query: 465 KQAEKLC 471
           + A   C
Sbjct: 290 QGAVDSC 296

>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The Chaperone Binding Site Occupied By The Linker Of The Purification Tag Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           V VH+T  L DGT  +S+R+   P  F LG  ++ +G +  +  +K G+   F++ P+ A
Sbjct: 31  VLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAA 90
Query: 119 YG 120
           +G
Sbjct: 91  FG 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	492
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	1e-160
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	1e-57
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	2e-95
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	1e-58
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	4e-29
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-88
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-64
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-67
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-19
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	7e-67
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	4e-26
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	2e-19
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	8e-64
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	9e-27
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	6e-19
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	1e-63
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-24
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	3e-17
2ppn_A	107	FK506-binding protein 1A; high resolution protein	4e-63
2ppn_A	107	FK506-binding protein 1A; high resolution protein	3e-25
2ppn_A	107	FK506-binding protein 1A; high resolution protein	4e-17
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	1e-61
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	4e-23
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	1e-15
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	2e-61
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	5e-25
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	5e-18
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	2e-59
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	6e-23
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	9e-16
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	1e-58
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	2e-26
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	6e-17
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	3e-58
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	1e-20
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	3e-12
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	7e-57
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-31
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-21
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	8e-57
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	6e-26
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	6e-16
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	5e-56
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	7e-32
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	1e-25
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	1e-55
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	1e-29
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	5e-25
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	2e-55
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	4e-19
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	6e-12
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	1e-53
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	3e-28
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	4e-20
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	1e-52
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	8e-20
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	9e-16
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	2e-52
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	1e-29
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	2e-22
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	7e-52
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	3e-16
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	6e-12
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	1e-51
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	7e-19
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	1e-13
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	3e-49
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	1e-17
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	2e-10
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	1e-39
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	2e-14
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	4e-09
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	6e-38
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	4e-13
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	3e-09
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	2e-37
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	1e-14
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	6e-09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-32
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-27
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	7e-20
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	3e-19
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	9e-06
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	2e-05
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-16
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	3e-16
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	3e-06
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	9e-05
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	3e-16
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	8e-05
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	8e-16
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	3e-06
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	8e-05
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	9e-15
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	3e-05
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	2e-14
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	2e-13
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	4e-12
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-09
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	6e-09
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	9e-09
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-08
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-08
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-08
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-08
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-08
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	5e-08
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	9e-08
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-04

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  457 bits (1178), Expect = e-160
 Identities = 289/358 (80%), Positives = 318/358 (88%), Gaps = 2/358 (0%)

Query: 27  KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
           KVGEE EIG QGLKKKL+KEGEGWDTPE GDEVEVHYTGTLLDG +FDSSRDR   FKF 
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60

Query: 87  LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
           LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 120

Query: 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           +DI KDGGI KKILKEG+KWENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 121 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 180

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G  GAVPPNA+L I LELVSWKTV+EI
Sbjct: 181 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 240

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH +E++ FEFKTDEE 
Sbjct: 241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGH-DEQEPFEFKTDEEA 299

Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
           VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+
Sbjct: 300 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKD 356

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  193 bits (493), Expect = 1e-57
 Identities = 91/250 (36%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
             G+ KK+LKEGE W+ P+  DEV V+Y   L DG        + D  +F +  G     
Sbjct: 10  KQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKG 69

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT 267
             + +KTMKKGE  L  + P+  +GE G         +P NATLQ  +EL+SW +V +I 
Sbjct: 70  WDQGIKTMKKGENALFTIPPELAYGESGSP-----PTIPANATLQFDVELLSWTSVRDIA 124

Query: 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQV 327
            D  + KKILKEGD +E P +   V VK   +L+DGTV        + +  EF   +  +
Sbjct: 125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVV------SKSEGVEFTVKDGHL 178

Query: 328 IDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELA--VVPPNSTVHYEVELVSFEKEK 385
              L +AV TMKK E  LL + P+Y FG            VPPN+++  ++ELVS++   
Sbjct: 179 CPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVT 238

Query: 386 ESWDMNTEEK 395
           E  D     K
Sbjct: 239 EIGDDKKILK 248

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  289 bits (740), Expect = 2e-95
 Identities = 107/262 (40%), Positives = 142/262 (54%), Gaps = 11/262 (4%)

Query: 9   AANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTL 67
            A EM A       AP+   G +     ++G+ K + +EG G + P  GD V VHYTG L
Sbjct: 22  TAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL 81

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127
           LDGT+FDSS DR   F F LG+G VIK WDI I TMK GE    T  PE AYG +GSPP 
Sbjct: 82  LDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK 141

Query: 128 IPPNATLQFDVELLS-WTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDG 186
           IPPNATL F+VEL           +DGGII++I   GE +  P +   V V  E   +D 
Sbjct: 142 IPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK 201

Query: 187 MVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEG 243
           +   +   + F + +G        L +A++ M+KGE  ++ +KP Y FG  GK     + 
Sbjct: 202 LFDQR--ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KF 255

Query: 244 AVPPNATLQIALELVSWKTVSE 265
            +PPNA L+  L L S++   E
Sbjct: 256 QIPPNAELKYELHLKSFEKAKE 277

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  193 bits (493), Expect = 1e-58
 Identities = 86/283 (30%), Positives = 134/283 (47%), Gaps = 35/283 (12%)

Query: 127 TIPPNATLQFDVELLSWTSVK------------DICKDGGIIKKILKEGEKWENPKDLDE 174
            + P  +     E+ +  S                 +D G++K I +EG   E P   D 
Sbjct: 13  GLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDR 72

Query: 175 VLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYG 230
           V V+Y   L DG      + + D   F +  G        A+ TMK GE   +  KP+Y 
Sbjct: 73  VFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYA 132

Query: 231 FGEKGKSASGNEGAVPPNATLQIALELVS-WKTVSEITDDKKVIKKILKEGDGFERPNEG 289
           +G  G         +PPNATL   +EL           +D  +I++I   G+G+ +PNEG
Sbjct: 133 YGSAGSP-----PKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEG 187

Query: 290 AVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID---GLDRAVITMKKNEVALL 346
           A+V+V L G  +D  +F ++          F+  E + +D   GL+RA+  M+K E +++
Sbjct: 188 AIVEVALEGYYKDK-LFDQRE-------LRFEIGEGENLDLPYGLERAIQRMEKGEHSIV 239

Query: 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWD 389
            + P YAFGS   ++    +PPN+ + YE+ L SFEK KESW+
Sbjct: 240 YLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWE 280

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  114 bits (288), Expect = 4e-29
 Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 23/179 (12%)

Query: 234 KGKSASGNEGAVPPNATLQIALELVSWKTVSE------------ITDDKKVIKKILKEGD 281
                  +   + P  +   A E+ + ++ ++               D+ V+K I +EG 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGT 62

Query: 282 GFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGLDRAVITM 338
           G E P  G  V V   G L DGT F   + +        F F   + +VI   D A+ TM
Sbjct: 63  GTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRK-----DKFSFDLGKGEVIKAWDIAIATM 117

Query: 339 KKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIE 397
           K  EV  +T  PEYA+GSA S      +PPN+T+ +EVEL  F+ E  + + +      
Sbjct: 118 KVGEVCHITCKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRR 173

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  277 bits (709), Expect = 2e-88
 Identities = 109/333 (32%), Positives = 179/333 (53%), Gaps = 19/333 (5%)

Query: 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV----GKADGVEFTVKDG 202
               KD G++K + + G   E P   D+V V+Y+ +L +G        + +   F++  G
Sbjct: 25  ITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKG 84

Query: 203 HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT 262
                    V TMK+GE   L  KP+Y +G  G         +P NATL   +EL+ +K 
Sbjct: 85  QVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGS-----LPKIPSNATLFFEIELLDFKG 139

Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKT 322
             ++ +D  +I++  ++G+G+  PNEGA V++ L G+   G +F  +  +     F    
Sbjct: 140 -EDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMFDCRDVA-----FTVGE 192

Query: 323 DEEQ-VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            E+  +  G+D+A+  M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SF
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSF 250

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M+T+EK+E A   KE+G   FK GKY +A  +Y K V ++E +    ++E K
Sbjct: 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESK 310

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
            +++  +A  LN A C LKL++Y +A + C K 
Sbjct: 311 ASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  215 bits (548), Expect = 1e-64
 Identities = 100/262 (38%), Positives = 151/262 (57%), Gaps = 11/262 (4%)

Query: 9   AANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTL 67
             +E   + +    A + + GE+     ++G+ K + + G G +TP  GD+V VHY G L
Sbjct: 2   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 61

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127
            +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMK+GE       PE AYG +GS P 
Sbjct: 62  SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPK 121

Query: 128 IPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM 187
           IP NATL F++ELL +   +D+ +DGGII++  ++GE + NP +   V ++ E R    M
Sbjct: 122 IPSNATLFFEIELLDFK-GEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRM 180

Query: 188 VVGKADGVEFTVKDGHF---CPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA 244
              +   V FTV +G        + KA++ M++ E+ +L + P+YGFGE GK     +  
Sbjct: 181 FDCR--DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKP----KFG 234

Query: 245 VPPNATLQIALELVSWKTVSEI 266
           + PNA L   + L S++   E 
Sbjct: 235 IEPNAELIYEVTLKSFEKAKES 256

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  218 bits (556), Expect = 4e-67
 Identities = 84/214 (39%), Positives = 135/214 (63%), Gaps = 13/214 (6%)

Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           S + +D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIG 70

Query: 324 EEQ---VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
           E +   +  GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L S
Sbjct: 71  EGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGS--VGKEKFQIPPNAELKYELHLKS 128

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
           FEK KESW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF +EE 
Sbjct: 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188

Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           ++A+AL++A +LN A C LKL+ +  A + C K 
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  103 bits (259), Expect = 1e-24
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG---N 91
            + G+ +++   GEG+  P  G  VEV   G   D   FD         +F +G+G   +
Sbjct: 23  EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-----ELRFEIGEGENLD 76

Query: 92  VIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT-IPPNATLQFDVELLSWTSVKDI 149
           +  G +  I+ M+KGE+++  + P  A+G  G     IPPNA L++++ L S+   K+ 
Sbjct: 77  LPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKES 135

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 87.3 bits (216), Expect = 5e-19
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 9/124 (7%)

Query: 148 DICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDG---HF 204
            + +DGGII++I   GE +  P +   V V  E   +D +   +   + F + +G     
Sbjct: 20  HMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQR--ELRFEIGEGENLDL 77

Query: 205 CPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVS 264
              L +A++ M+KGE  ++ +KP Y FG  GK     +  +PPNA L+  L L S++   
Sbjct: 78  PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAK 133

Query: 265 EITD 268
           E  +
Sbjct: 134 ESWE 137

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score =  210 bits (536), Expect = 7e-67
 Identities = 71/134 (52%), Positives = 91/134 (67%), Gaps = 6/134 (4%)

Query: 29  GEEKEI---GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKF 85
           GE+ +I    + G+ K + KEG+G   P  G  V+VHY GTL +GT+FDSSRDR   F F
Sbjct: 3   GEKIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSF 62

Query: 86  TLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
            LG+GNVIKGWD+G+ TM KGE A FTI  +  YG++GSPP IP  ATL F+VEL  W S
Sbjct: 63  NLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW-S 121

Query: 146 VKDIC--KDGGIIK 157
            +DI   +DG I++
Sbjct: 122 AEDISPDRDGTILR 135

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score =  102 bits (256), Expect = 4e-26
 Identities = 47/129 (36%), Positives = 61/129 (47%), Gaps = 11/129 (8%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKT 322
              D  V+K I KEG G  +P  G  VKV  +G L++GT F     +G       F F  
Sbjct: 10  PKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRG-----DQFSFNL 64

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
               VI G D  V TM K EVA  TI  +Y +G A S      +P  +T+ +EVEL  + 
Sbjct: 65  GRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSP---PKIPGGATLIFEVELFEWS 121

Query: 383 KEKESWDMN 391
            E  S D +
Sbjct: 122 AEDISPDRD 130

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 9/129 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KDGG++K I KEG+    P     V V+Y   LE+G        + D   F +  G+   
Sbjct: 12  KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 71

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
                V TM KGE     ++  YG+G+ G   S     +P  ATL   +EL  W      
Sbjct: 72  GWDLGVATMTKGEVAEFTIRSDYGYGDAG---SP--PKIPGGATLIFEVELFEWSAEDIS 126

Query: 267 TDDKKVIKK 275
            D    I +
Sbjct: 127 PDRDGTILR 135

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score =  202 bits (515), Expect = 8e-64
 Identities = 61/123 (49%), Positives = 81/123 (65%), Gaps = 1/123 (0%)

Query: 22  DAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRS 80
            A + + GE+     ++G+ K + + G G +TP  GD+V VHY G L +G +FDSS DR+
Sbjct: 3   PATVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN 62

Query: 81  TPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVEL 140
            PF F+LG+G VIK WDIG+ TMKKGE       PE AYG +GS P IP NATL F++EL
Sbjct: 63  EPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIEL 122

Query: 141 LSW 143
           L +
Sbjct: 123 LDF 125

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score =  103 bits (260), Expect = 9e-27
 Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 11/122 (9%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKT 322
              D+ V+K + + G+G E P  G  V V   GKL +G  F     +      + F F  
Sbjct: 15  SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN-----EPFVFSL 69

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            + QVI   D  V TMKK E+  L   PEYA+GSA S      +P N+T+ +E+EL+ F+
Sbjct: 70  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK 126

Query: 383 KE 384
            E
Sbjct: 127 GE 128

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 81.9 bits (203), Expect = 6e-19
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y+ +L +G        + +   F++  G    
Sbjct: 17  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 76

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TMKKGE   L  KP+Y +G  G   S     +P NATL   +EL+ +K
Sbjct: 77  AWDIGVATMKKGEICHLLCKPEYAYGSAG---SL--PKIPSNATLFFEIELLDFK 126

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score =  200 bits (512), Expect = 1e-63
 Identities = 56/111 (50%), Positives = 70/111 (63%)

Query: 33  EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNV 92
           E+    +K   +  G+G   P+ GD V +HYTGTL +G +FDSS DR +PF+  +G G V
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQV 61

Query: 93  IKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           IKGWD+GI  +  GE A  TIP   AYG  G P  IPPN+TL FDVELL  
Sbjct: 62  IKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV 112

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 96.5 bits (241), Expect = 2e-24
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEF 320
           SE+ +   V    +  GDG   P  G +V +   G L++G  F   V +G       F+ 
Sbjct: 1   SEVIEGN-VKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRG-----SPFQC 54

Query: 321 KTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
                QVI G D  +  +   E A LTI   YA+G         ++PPNST+ ++VEL+ 
Sbjct: 55  NIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP---GLIPPNSTLVFDVELLK 111

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 76.5 bits (189), Expect = 3e-17
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
           +G +    +  G+    PK  D V ++Y   LE+G      V +    +  +  G     
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
               +  +  GEK  L +   Y +G +G       G +PPN+TL   +EL+  
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRG---FP--GLIPPNSTLVFDVELLKV 112

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score =  199 bits (509), Expect = 4e-63
 Identities = 54/106 (50%), Positives = 70/106 (66%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           G++ + +  G+G   P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            G+  M  G+ A  TI P+ AYG +G P  IPP+ATL FDVELL  
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 98.8 bits (247), Expect = 3e-25
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 11/114 (9%)

Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVI 328
           V  + +  GDG   P  G    V   G L+DG  F     +      + F+F   +++VI
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRN-----KPFKFMLGKQEVI 56

Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            G +  V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 57  RGWEEGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 76.1 bits (188), Expect = 4e-17
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 9/112 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLA 209
           G+  + +  G+    PK     +V+Y   LEDG        +    +F +          
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + V  M  G++  L + P Y +G  G       G +PP+ATL   +EL+  +
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATG---HP--GIIPPHATLVFDVELLKLE 107

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score =  196 bits (501), Expect = 1e-61
 Identities = 63/105 (60%), Positives = 75/105 (71%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
            L+KK++  G+G   P+ G +V VHY G   DG QFDSSR R  PF+FTLG G VIKGWD
Sbjct: 25  QLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWD 84

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G+ TM  GE A+FTIP +LAYGE G PP IPP ATL F+VELL+
Sbjct: 85  QGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 93.5 bits (233), Expect = 4e-23
 Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 11/123 (8%)

Query: 261 KTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQL 317
           +T    +   ++ KK+L  GDG  +P  G  V V   G+  DG  F     +G     + 
Sbjct: 15  QTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRG-----KP 69

Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
           F+F     +VI G D+ V TM   E AL TI  + A+G         V+PP +T+ +EVE
Sbjct: 70  FQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYP---PVIPPKATLVFEVE 126

Query: 378 LVS 380
           L++
Sbjct: 127 LLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 9/112 (8%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
              + KK+L  G+    P+   +V V+Y+ R  DG        +    +FT+  G     
Sbjct: 23  SAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKG 82

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
             + V TM  GEK L  +  Q  +GE+G         +PP ATL   +EL++
Sbjct: 83  WDQGVATMTLGEKALFTIPYQLAYGERG---YP--PVIPPKATLVFEVELLA 129

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score =  196 bits (501), Expect = 2e-61
 Identities = 62/136 (45%), Positives = 85/136 (62%), Gaps = 1/136 (0%)

Query: 9   AANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTL 67
             +E   + +    A + + GE+     ++G+ K + + G G +TP  GD+V VHY G L
Sbjct: 6   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 65

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127
            +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE       PE AYG +GS P 
Sbjct: 66  SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK 125

Query: 128 IPPNATLQFDVELLSW 143
           IP NATL F++ELL +
Sbjct: 126 IPSNATLFFEIELLDF 141

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 99.3 bits (248), Expect = 5e-25
 Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 11/122 (9%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKT 322
              D+ V+K + + G+G E P  G  V V   GKL +G  F     +      + F F  
Sbjct: 31  SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN-----EPFVFSL 85

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            + QVI   D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+
Sbjct: 86  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFK 142

Query: 383 KE 384
            E
Sbjct: 143 GE 144

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 79.7 bits (197), Expect = 5e-18
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y+ +L +G        + +   F++  G    
Sbjct: 33  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 92

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TMKKGE   L  KP+Y +G  G   S     +P NATL   +EL+ +K
Sbjct: 93  AWDIGVATMKKGEICHLLCKPEYAYGSAG---SL--PKIPSNATLFFEIELLDFK 142

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score =  190 bits (485), Expect = 2e-59
 Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 7/129 (5%)

Query: 26  MKVGEEKE----IGNQGLKKKLVKEGEGWD--TPENGDEVEVHYTGTLLD-GTQFDSSRD 78
           M   +E E      + G+ K ++K+G+  +   P+ G+EV VHY G L   G  FDSS D
Sbjct: 1   MTTEQEFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD 60

Query: 79  RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDV 138
           R+ PFKF L QG VIKGWDI + +M+K E  +  I     YG+ G   +IP N+ L F++
Sbjct: 61  RNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEI 120

Query: 139 ELLSWTSVK 147
           ELLS+  ++
Sbjct: 121 ELLSFRELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 93.1 bits (232), Expect = 6e-23
 Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 14/127 (11%)

Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVF---VKKGHSEEEQLF 318
           E+T D  VIK ILK+GD  E   P +G  V V  +GKL+  G VF     +        F
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRN-----VPF 65

Query: 319 EFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
           +F  ++ +VI G D  V +M+KNE  L+ I   Y +G          +P NS + +E+EL
Sbjct: 66  KFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCG---ESIPGNSVLLFEIEL 122

Query: 379 VSFEKEK 385
           +SF + +
Sbjct: 123 LSFRELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 72.7 bits (179), Expect = 9e-16
 Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 12/124 (9%)

Query: 147 KDICKDGGIIKKILKEGEKWE--NPKDLDEVLVNYEARLED-GMV----VGKADGVEFTV 199
            ++  DGG+IK ILK+G++ E   PK  +EV V+Y  +LE  G V      +    +F +
Sbjct: 10  VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHL 69

Query: 200 KDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
           + G         V +M+K EK L+ ++  YG+G++G    G   ++P N+ L   +EL+S
Sbjct: 70  EQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEG---CG--ESIPGNSVLLFEIELLS 124

Query: 260 WKTV 263
           ++ +
Sbjct: 125 FREL 128

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score =  188 bits (481), Expect = 1e-58
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 4/128 (3%)

Query: 20  PDDAPMMKVGEEKEI--GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLD-GTQFDSS 76
           P  +   ++ +      G++G+ K +++EG G D       V V Y+G L      FDS+
Sbjct: 7   PGQSLYERLSQRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSN 65

Query: 77  RDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQF 136
             R TP    LG+   + G ++G+ +M++GE A F   P  AYG  G PP IPPN T+ F
Sbjct: 66  YFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLF 125

Query: 137 DVELLSWT 144
           ++ELL + 
Sbjct: 126 EIELLDFL 133

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score =  103 bits (259), Expect = 2e-26
 Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 17/144 (11%)

Query: 242 EGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ 301
           EG   P  +L   L     + + +I+ D+ V+K +++EG G +     A V VK  G L+
Sbjct: 2   EGDDAPGQSLYERLS----QRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLE 56

Query: 302 D-GTVF---VKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSA 357
                F     +           K  E+  + G++  +++M++ E+A     P YA+G+ 
Sbjct: 57  HMDRPFDSNYFRK-----TPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTL 111

Query: 358 ESQQELAVVPPNSTVHYEVELVSF 381
                  ++PPN+TV +E+EL+ F
Sbjct: 112 GCP---PLIPPNTTVLFEIELLDF 132

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 76.1 bits (188), Expect = 6e-17
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 11/118 (9%)

Query: 148 DICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLED-GMV----VGKADGVEFTVKDG 202
           DI  D G++K +++EG   +       VLV Y   LE           +       + + 
Sbjct: 21  DISGDRGVLKDVIREGA-GDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGED 79

Query: 203 HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
                +   + +M++GE      KP Y +G  G         +PPN T+   +EL+ +
Sbjct: 80  ITLWGMELGLLSMRRGELARFLFKPNYAYGTLG---CP--PLIPPNTTVLFEIELLDF 132

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score =  186 bits (475), Expect = 3e-58
 Identities = 51/103 (49%), Positives = 63/103 (61%), Gaps = 1/103 (0%)

Query: 47  GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKG 106
           G        GD + +HYTG L DGT+FDSS  ++ PF F+LG G VIKGWD G+  M +G
Sbjct: 1   GSP-IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEG 59

Query: 107 ENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDI 149
           E     IP EL YGE G+PP IP  ATL F+VELL      ++
Sbjct: 60  EKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRTEL 102

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 86.1 bits (214), Expect = 1e-20
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 280 GDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           G    +  +G V+ +   GKL+DGT F   + +      Q F F     QVI G D+ ++
Sbjct: 1   GSP-IKSRKGDVLHMHYTGKLEDGTEFDSSLPQN-----QPFVFSLGTGQVIKGWDQGLL 54

Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
            M + E   L I  E  +G   +      +P  +T+ +EVEL+  E+  E
Sbjct: 55  GMCEGEKRKLVIPSELGYGERGAP---PKIPGGATLVFEVELLKIERRTE 101

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 62.2 bits (152), Expect = 3e-12
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
              +  D + ++Y  +LEDG      + +     F++  G       + +  M +GEK  
Sbjct: 4   IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRK 63

Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
           L +  + G+GE+G   +     +P  ATL   +EL+  +  +E+
Sbjct: 64  LVIPSELGYGERG---AP--PKIPGGATLVFEVELLKIERRTEL 102

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  191 bits (486), Expect = 7e-57
 Identities = 77/265 (29%), Positives = 121/265 (45%), Gaps = 26/265 (9%)

Query: 216 KKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKK 275
              E  ++         E  +     EG VPP    +                D+KV K+
Sbjct: 12  HDQESEIVTEGSAVVHSEPSQ-----EGNVPPKVDSEA------------EVLDEKVSKQ 54

Query: 276 ILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKT-DEEQVIDGLDRA 334
           I+KEG G  +P++ +   +      ++     +    E++   E     E++ + GL   
Sbjct: 55  IIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQP-IELVLGKEKKELAGLAIG 112

Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV---SFEKEKESWDMN 391
           V +MK  E AL+ +  E A+G  E       VPP + + YEVE++     ++ K   DM 
Sbjct: 113 VASMKSGERALVHVGWELAYGK-EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMT 171

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG--DEEKKQAKALKVA 449
            EE+I AA ++K  GN+LFK  K   A ++YE A+ Y+  D  F    + +  A A+K  
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP 231

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKV 474
           C+LN AAC +KLK Y +A   C  V
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIV 256

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  123 bits (309), Expect = 1e-31
 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 5/150 (3%)

Query: 2   DEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEV 61
            E   +   + +       +     KV  E E+ ++ + K+++KEG G   P       +
Sbjct: 14  QESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFL 72

Query: 62  HYTGTLLDGTQ-FDSSRDRSTPFKFTLGQ-GNVIKGWDIGIKTMKKGENAVFTIPPELAY 119
           HY     +    F+ +     P +  LG+    + G  IG+ +MK GE A+  +  ELAY
Sbjct: 73  HYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAY 132

Query: 120 GESGSPP--TIPPNATLQFDVELLSWTSVK 147
           G+ G+     +PP A L ++VE++ +   K
Sbjct: 133 GKEGNFSFPNVPPMADLLYEVEVIGFDETK 162

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 94.3 bits (234), Expect = 2e-21
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 22/174 (12%)

Query: 104 KKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEG 163
              E+ + T    + + E      +PP    + +V             D  + K+I+KEG
Sbjct: 12  HDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVL------------DEKVSKQIIKEG 59

Query: 164 EKWENPKDLDEVLVNYEARLEDGMVV---GKADGVEFTV---KDGHFCPTLAKAVKTMKK 217
                P       ++Y A  ++          +     +   K+      LA  V +MK 
Sbjct: 60  H-GSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKS 118

Query: 218 GEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK 271
           GE+ L+ V  +  +G++G  +      VPP A L   +E++ +    E      
Sbjct: 119 GERALVHVGWELAYGKEGNFS---FPNVPPMADLLYEVEVIGFDETKEGKARSD 169

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score =  183 bits (467), Expect = 8e-57
 Identities = 50/117 (42%), Positives = 66/117 (56%), Gaps = 8/117 (6%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSS-------RDRSTPFKFTL 87
           G     K ++K+G+  + P+ GD V   YTGTL DGT FD++       +  + P  F +
Sbjct: 2   GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKV 61

Query: 88  GQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSP-PTIPPNATLQFDVELLSW 143
           G G VI+GWD  + TM KGE A   I PE AYG+ G P   IPPN  L F+VEL+  
Sbjct: 62  GVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score =  101 bits (253), Expect = 6e-26
 Identities = 45/119 (37%), Positives = 59/119 (49%), Gaps = 7/119 (5%)

Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTD 323
             K  K ILK+GD    P +G VV     G L DGTVF           +  +   FK  
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
             +VI G D A++TM K E A L I PE+A+G        A +PPN+ + +EVELV  +
Sbjct: 63  VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD--AKIPPNTKLIFEVELVDID 119

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 73.1 bits (180), Expect = 6e-16
 Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV-----------VGKADGVEFTVK 200
                K ILK+G+K   PK  D V   Y   L DG V              A  + F V 
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62

Query: 201 DGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
            G       +A+ TM KGEK  L ++P++ +G+KG+        +PPN  L   +ELV  
Sbjct: 63  VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD----AKIPPNTKLIFEVELVDI 118

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  182 bits (463), Expect = 5e-56
 Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 8/129 (6%)

Query: 29  GEEKE--IGNQGLKKKLVKEG-EGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKF 85
           GEE    +GN  L+KK +  G  G   P  G  V VH   +L +GT+            F
Sbjct: 7   GEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVF 62

Query: 86  TLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPTIPPNATLQFDVELLSWT 144
           TLG  +VI+  D+ +  M  GE A+ T   +  YG  GS  P IPP+A L  +V L +  
Sbjct: 63  TLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAV 122

Query: 145 SVKDICKDG 153
              D+   G
Sbjct: 123 DRPDLEMSG 131

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  118 bits (297), Expect = 7e-32
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 9/123 (7%)

Query: 265 EITDDKKVIKKILKEG-DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           +I  +  + KK L  G  G  RP +G VV V L   L++GT        +EE    F   
Sbjct: 12  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRV------QEEPELVFTLG 65

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
           +  VI  LD +V  M   E A++T   +Y +G   S+     +PP++ +  EV L +   
Sbjct: 66  DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTLKTAVD 123

Query: 384 EKE 386
             +
Sbjct: 124 RPD 126

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  100 bits (252), Expect = 1e-25
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 148 DICKDGGIIKKILKEG-EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           DI  +G + KK L  G      P     V V+ +  LE+G  V +   + FT+ D     
Sbjct: 12  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 71

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            L  +V  M  GE  ++    +Y +G +G         +PP+A L + + L +     ++
Sbjct: 72  ALDLSVPLMDVGETAMVTADSKYCYGPQG----SRSPYIPPHAALCLEVTLKTAVDRPDL 127

Query: 267 TDD 269
              
Sbjct: 128 EMS 130

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  180 bits (460), Expect = 1e-55
 Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 35  GNQGLKKKLVKEGEG-WDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVI 93
           GN  L+KK +  G      P  G  V VH   +L +GT+            FTLG  +VI
Sbjct: 11  GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVFTLGDCDVI 66

Query: 94  KGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144
           +  D+ +  M  GE A+ T   +  YG  G  P IPP+A L  +V L +  
Sbjct: 67  QALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  111 bits (279), Expect = 1e-29
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 265 EITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           +I  +  + KK L  G     RP +G VV V L   L++GT        +EE    F   
Sbjct: 8   DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRV------QEEPELVFTLG 61

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +  VI  LD +V  M   E A++T   +Y +G          +PP++ +  EV L +  
Sbjct: 62  DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRS---PYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 98.5 bits (246), Expect = 5e-25
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 148 DICKDGGIIKKILKEGE-KWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           DI  +G + KK L  G      P     V V+ +  LE+G  V +   + FT+ D     
Sbjct: 8   DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 67

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
            L  +V  M  GE  ++    +Y +G +G+        +PP+A L + + L +  
Sbjct: 68  ALDLSVPLMDVGETAMVTADSKYCYGPQGR-----SPYIPPHAALCLEVTLKTAV 117

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score =  180 bits (459), Expect = 2e-55
 Identities = 58/105 (55%), Positives = 68/105 (64%), Gaps = 1/105 (0%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GLK + + EG G      G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD
Sbjct: 29  GLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWD 87

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G++ MK G     TIPP+L YG  G+   IPPNATL F+VELL 
Sbjct: 88  EGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 82.7 bits (205), Expect = 4e-19
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 261 KTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQL 317
             ++ +T +  +  + L EG G      G  V V   G L DG  F     +        
Sbjct: 19  SHMTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRN-----DP 72

Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
           F F      VI G D  V  MK   V  LTI P+  +G+  +     V+PPN+T+ +EVE
Sbjct: 73  FAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVE 129

Query: 378 LVS 380
           L+ 
Sbjct: 130 LLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 61.9 bits (151), Expect = 6e-12
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
           + G+  + L EG      +    V V+Y   L DG        + D   F +  G     
Sbjct: 27  ESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKG 85

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
             + V+ MK G    L + PQ G+G +G   +G  G +PPNATL   +EL+ 
Sbjct: 86  WDEGVQGMKVGGVRRLTIPPQLGYGARG---AG--GVIPPNATLVFEVELLD 132

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  177 bits (450), Expect = 1e-53
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
             E   +   + +       +     KV  E E+ ++ + K+++KEG G   P       
Sbjct: 13  DQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCF 71

Query: 61  VHYTGTLLDGT-QFDSSRDRSTPFKFTLG-QGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           +HY     +   +F+ +     P +  LG +   + G  IG+ +MK GE A+  +  ELA
Sbjct: 72  LHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELA 131

Query: 119 YGESG--SPPTIPPNATLQFDVELLSWTSVKDI 149
           YG+ G  S P +PP A L ++VE++ +   K+ 
Sbjct: 132 YGKEGNFSFPNVPPMADLLYEVEVIGFDETKEG 164

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  109 bits (275), Expect = 3e-28
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 15/141 (10%)

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT-VF---VKKGHSEEEQLFEFK- 321
             D+KV K+I+KEG G  +P++ +   +      ++    F     +      Q  E   
Sbjct: 46  VLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQ-----QPIELVL 99

Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
             E++ + GL   V +MK  E AL+ +  E A+G  E       VPP + + YEVE++ F
Sbjct: 100 GKEKKELAGLAIGVASMKSGERALVHVGWELAYG-KEGNFSFPNVPPMADLLYEVEVIGF 158

Query: 382 EKEKES---WDMNTEEKIEAA 399
           ++ KE     DM  EE+I AA
Sbjct: 159 DETKEGKARSDMTVEERIGAA 179

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 86.8 bits (215), Expect = 4e-20
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 22/174 (12%)

Query: 101 KTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKIL 160
                 E+ + T    + + E      +PP    + +V             D  + K+I+
Sbjct: 9   TQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEV------------LDEKVSKQII 56

Query: 161 KEGEKWENPKDLDEVLVNYEARLEDGMVV-----GKADGVEFTV-KDGHFCPTLAKAVKT 214
           KEG     P       ++Y A  ++          +   +E  + K+      LA  V +
Sbjct: 57  KEGH-GSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVAS 115

Query: 215 MKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITD 268
           MK GE+ L+ V  +  +G++G   + +   VPP A L   +E++ +    E   
Sbjct: 116 MKSGERALVHVGWELAYGKEG---NFSFPNVPPMADLLYEVEVIGFDETKEGKA 166

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score =  176 bits (447), Expect = 1e-52
 Identities = 61/128 (47%), Positives = 73/128 (57%), Gaps = 1/128 (0%)

Query: 15  ADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFD 74
            D D+ +       G        GLK + + EG G      G  V VHYTG L DG +FD
Sbjct: 82  EDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFD 140

Query: 75  SSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATL 134
           SS+DR+ PF F LG G VIKGWD G++ MK G     TIPP+L YG  G+   IPPNATL
Sbjct: 141 SSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATL 200

Query: 135 QFDVELLS 142
            F+VELL 
Sbjct: 201 VFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 86.8 bits (215), Expect = 8e-20
 Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 14/168 (8%)

Query: 216 KKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKK 275
           K+  K + +++  Y         +  +  +  N  ++   E +   TV  +T +  +  +
Sbjct: 52  KRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGSTV--VTTESGLKYE 109

Query: 276 ILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGLD 332
            L EG G      G  V V   G L DG  F     +        F F      VI G D
Sbjct: 110 DLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRN-----DPFAFVLGGGMVIKGWD 163

Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
             V  MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+ 
Sbjct: 164 EGVQGMKVGGVRRLTIPPQLGYGARGAA---GVIPPNATLVFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 75.2 bits (185), Expect = 9e-16
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 11/187 (5%)

Query: 78  DRSTPFKFTLGQGNVIKGWDIGIKTM-KKGENAVFTIPPELAYGESGSPPTIPPNATLQF 136
           D S+   F + +   ++           K  +++  +   +      +P  +        
Sbjct: 28  DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDII 87

Query: 137 DVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKA 192
           +           +  + G+  + L EG   E  +    V V+Y   L DG        + 
Sbjct: 88  EAHREQIGGSTVVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRN 146

Query: 193 DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQ 252
           D   F +  G       + V+ MK G    L + PQ G+G +G +     G +PPNATL 
Sbjct: 147 DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAA-----GVIPPNATLV 201

Query: 253 IALELVS 259
             +EL+ 
Sbjct: 202 FEVELLD 208

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score =  173 bits (441), Expect = 2e-52
 Identities = 47/141 (33%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 10  ANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEG-WDTPENGDEVEVHYTGTL 67
           A E  A M+ P+ AP     E  +I GN  L+KK +  G      P  G  V VH   +L
Sbjct: 16  AREFLAAME-PEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL 74

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PP 126
            +GT+            FTLG  +VI+  D+ +  M  GE A+ T   +  YG  GS  P
Sbjct: 75  ENGTRVQEEP----ELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSP 130

Query: 127 TIPPNATLQFDVELLSWTSVK 147
            IPP+A L  +V L +   ++
Sbjct: 131 YIPPHAALCLEVTLKTAVDLE 151

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score =  112 bits (283), Expect = 1e-29
 Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 14/170 (8%)

Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEG-D 281
           +   P     + G  A     A+ P      A E        +I  +  + KK L  G  
Sbjct: 1   MGQPPAEEAEQPGALAREFLAAMEPEPAPAPAPE-----EWLDILGNGLLRKKTLVPGPP 55

Query: 282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN 341
           G  RP +G VV V L   L++GT        +EE    F   +  VI  LD +V  M   
Sbjct: 56  GSSRPVKGQVVTVHLQTSLENGTRV------QEEPELVFTLGDCDVIQALDLSVPLMDVG 109

Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
           E A++T   +Y +G   S+     +PP++ +  EV L +    +     +
Sbjct: 110 ETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTLKTAVDLEHHHHHH 157

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 92.9 bits (231), Expect = 2e-22
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 148 DICKDGGIIKKILKEG-EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           DI  +G + KK L  G      P     V V+ +  LE+G  V +   + FT+ D     
Sbjct: 38  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 97

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
            L  +V  M  GE  ++    +Y +G +G         +PP+A L + + L +   +  
Sbjct: 98  ALDLSVPLMDVGETAMVTADSKYCYGPQG----SRSPYIPPHAALCLEVTLKTAVDLEH 152

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score =  172 bits (438), Expect = 7e-52
 Identities = 57/148 (38%), Positives = 78/148 (52%), Gaps = 19/148 (12%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  + +  G G   P   D+ EVHYTG L DGT FDSSR+R  P  F   +  VIKGW 
Sbjct: 38  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNE--VIKGWT 95

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIK 157
             ++ M++G+     IP +LAYG +G    IPP + L+FDVEL+S               
Sbjct: 96  EALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS--------------- 140

Query: 158 KILKEGEKWENPKDLDEVLVNYEARLED 185
             +K+G K    +++DE+L   E   ED
Sbjct: 141 --IKDGGKGRTAEEVDEILRKAEEDRED 166

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 75.1 bits (185), Expect = 3e-16
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           + +  G G   P      +V   G+L+DGTVF    ++G     +   F+ +  +VI G 
Sbjct: 42  QRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERG-----KPTTFRPN--EVIKGW 94

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
             A+  M++ +   L I  + A+G         ++PP S + ++VEL+S +   +     
Sbjct: 95  TEALQLMREGDRWRLFIPYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDGGKGRTAE 151

Query: 392 TEEKIEAAGKKKEQ 405
             ++I    ++  +
Sbjct: 152 EVDEILRKAEEDRE 165

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 62.8 bits (153), Expect = 6e-12
 Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 17/136 (12%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLA 209
           G++ + +  G     P   D+  V+Y  RL DG V      +     F            
Sbjct: 38  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRP--NEVIKGWT 95

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS------WKTV 263
           +A++ M++G++  L +     +G  G       G +PP + L+  +EL+S       +T 
Sbjct: 96  EALQLMREGDRWRLFIPYDLAYGVTGGG-----GMIPPYSPLEFDVELISIKDGGKGRTA 150

Query: 264 SEITDDKKVIKKILKE 279
            E+ +  +  ++  ++
Sbjct: 151 EEVDEILRKAEEDRED 166

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score =  170 bits (432), Expect = 1e-51
 Identities = 46/128 (35%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 27  KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
               E  +   GL       G G      G  ++ HY G L +G  FDSS +R  P  F 
Sbjct: 2   TTSCEFSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFR 60

Query: 87  LGQGNVIKGWDIGI------KTMKKGENAVFTIPPELAYGESG-----SPPTIPPNATLQ 135
           +G G VIKGWD GI        M  G      IPPELAYG+ G         IPP + L 
Sbjct: 61  IGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLL 120

Query: 136 FDVELLSW 143
           FD+E +  
Sbjct: 121 FDIEYIGK 128

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 81.6 bits (202), Expect = 7e-19
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 17/120 (14%)

Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVI 328
           +       G G     +G ++K   +GKL++G VF     +G     +   F+    +VI
Sbjct: 14  LAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRG-----KPLTFRIGVGEVI 67

Query: 329 DGLDRAVI------TMKKNEVALLTIAPEYAFGS--AESQQELAVVPPNSTVHYEVELVS 380
            G D+ ++       M       L I PE A+G   A  +    ++PP S + +++E + 
Sbjct: 68  KGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIG 127

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP- 206
             G+       G           +  +Y  +LE+G V      +   + F +  G     
Sbjct: 11  PSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKG 69

Query: 207 -----TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
                  +  +  M  G K  L + P+  +G++G    G    +PP + L   +E +  
Sbjct: 70  WDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score =  164 bits (416), Expect = 3e-49
 Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 38  GLKKKLVKEGEGW-DTPENGDEVEVHYTGTL-LDGTQFDSS--RDRSTPFKFTLGQGNVI 93
            +K +++++        + GD + VHY G L  DG+ F S+   +   P  FTLG    +
Sbjct: 13  EVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEAL 72

Query: 94  KGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
           KGWD G+K M  GE     IPP L YG+ G    IPP +TL F+++LL 
Sbjct: 73  KGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGK-IPPESTLIFNIDLLE 120

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 260 WKTVSEITDDKKVIKKILKEGDGFER-PNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQL 317
           ++++  +  + +V  ++L++     R    G ++ V   G L+ DG++F         Q 
Sbjct: 2   FQSMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQP 61

Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
             F     + + G D+ +  M   E   L I P   +G     +    +PP ST+ + ++
Sbjct: 62  IWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGK----EGKGKIPPESTLIFNID 117

Query: 378 LVSFEK 383
           L+    
Sbjct: 118 LLEIRN 123

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 14/129 (10%)

Query: 143 WTSVKDICKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLE-DGMV----VGKADG-- 194
           + S+  +  +  +  ++L++        K  D +LV+YE  LE DG +        +G  
Sbjct: 2   FQSMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQP 61

Query: 195 VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIA 254
           + FT+          + +K M  GEK  L + P  G+G++GK      G +PP +TL   
Sbjct: 62  IWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGK------GKIPPESTLIFN 115

Query: 255 LELVSWKTV 263
           ++L+  +  
Sbjct: 116 IDLLEIRNG 124

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score =  141 bits (358), Expect = 1e-39
 Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL+ K++  G G   P   D V V YTG L+DGT FDS+     P  F + Q  VI GW 
Sbjct: 107 GLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWT 163

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
             ++ M  G      +P  LAYG       I PN TL F + L+S
Sbjct: 164 EALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 14/112 (12%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           K++  G+G  +P +   V V+  G+L DGTVF    K G     +   F+    QVI G 
Sbjct: 111 KVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTG-----KPATFQVS--QVIPGW 162

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
             A+  M       + +    A+G          + PN T+ +++ L+S +K
Sbjct: 163 TEALQLMPAGSTWEIYVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK 211

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 158 KILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVK 213
           K++  G     P   D V V Y  RL DG V            F V      P   +A++
Sbjct: 111 KVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQ 167

Query: 214 TMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
            M  G    + V     +G +        G + PN TL   + L+S
Sbjct: 168 LMPAGSTWEIYVPSGLAYGPRSVG-----GPIGPNETLIFKIHLIS 208

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score =  137 bits (347), Expect = 6e-38
 Identities = 53/105 (50%), Positives = 69/105 (65%), Gaps = 4/105 (3%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  ++V+ G+G + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW 
Sbjct: 122 GLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWT 178

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G+K +KKG      IPPELAYG++G P  IPPN+TL FDVELL 
Sbjct: 179 EGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLD 222

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 67.9 bits (166), Expect = 4e-13
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 15/111 (13%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           ++++ G G E P +   V V   G L DG  F     +G     +   F+ D   VI G 
Sbjct: 126 QVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRG-----EPLSFRLD--GVIPGW 177

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
              +  +KK     L I PE A+G A        +PPNST+ ++VEL+  +
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGKAGVPG----IPPNSTLVFDVELLDVK 224

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 13/112 (11%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLA 209
           G++ ++++ G+  E PKD D V+VNY+  L DG        + + + F +      P   
Sbjct: 122 GLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWT 178

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + +K +KKG K+ L + P+  +G+ G         +PPN+TL   +EL+  K
Sbjct: 179 EGLKNIKKGGKIKLVIPPELAYGKAGV------PGIPPNSTLVFDVELLDVK 224

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score =  136 bits (343), Expect = 2e-37
 Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           G+    +  G G   P+    VEV Y G L DG  FD S     P  F L    VI GW 
Sbjct: 118 GILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQ---PQWFRLDS--VISGWT 171

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
             ++ M  G      IP + AYG  G+   I P   L F++EL++
Sbjct: 172 SALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
             L  G G  +P+    V+V+ +G+L DG +F +       Q   F+ D   VI G   A
Sbjct: 122 TELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQST-----QPQWFRLD--SVISGWTSA 173

Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
           +  M       L I  + A+G+   +    ++ P + + +E+EL++  +
Sbjct: 174 LQNMPTGAKWRLVIPSDQAYGA---EGAGDLIDPFTPLVFEIELIAVSQ 219

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKDGHFCPTLAKAV 212
           GI+   L  G     P     V V Y  RL DG +  ++     F +           A+
Sbjct: 118 GILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQPQWFRL--DSVISGWTSAL 174

Query: 213 KTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
           + M  G K  L +     +G +G         + P   L   +EL++
Sbjct: 175 QNMPTGAKWRLVIPSDQAYGAEGAG-----DLIDPFTPLVFEIELIA 216

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  122 bits (307), Expect = 1e-32
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 363 LAVVPPNSTVHYEVELVSFEK-EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKR 421
           +     +       E + F+  +K  +D   EEK+++A   KE+GN  FK  +   A  +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVK 60

Query: 422 YEKAVKYIEYDTSFGDEEK-KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           Y++A+ +  +   + D+    + K ++++CNLN A C  K KDY +A    +KV
Sbjct: 61  YKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  106 bits (267), Expect = 2e-27
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY---DTSFGDEEKKQAKAL 446
              ++K+++    +++GN LF    Y  A   Y  A+  ++        G+ E  +    
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 447 KVACNLNNAACKLKLKDYKQAEKLCTKV 474
            +    N + C L + D  +AE+  ++V
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEV 89

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 90.2 bits (224), Expect = 7e-20
 Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 1/102 (0%)

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
                  F ++ +    + ++ +  +   K  GNT FK+  +  A K+Y K ++Y+E   
Sbjct: 198 SGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR 257

Query: 434 SFGDEEKKQA-KALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           +  ++      + + ++C LN  ACKLK+ D++ A   C + 
Sbjct: 258 AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 83.9 bits (208), Expect = 3e-19
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           ++   V VH+T  L DGT  +S+R+   P  F LG  ++ +G +  +  +K G+   F++
Sbjct: 26  QSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSL 85

Query: 114 PPELAYGE 121
            P+ A+G 
Sbjct: 86  EPDAAFGV 93

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
             + V V    KL DGT           +   F+  +  + +GL++ ++ +K  +    +
Sbjct: 27  SNSAVLVHFTLKLDDGTTAEST--RNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFS 84

Query: 348 IAPEYAFG 355
           + P+ AFG
Sbjct: 85  LEPDAAFG 92

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 173 DEVLVNYEARLEDGMVV----GKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ 228
             VLV++  +L+DG              F + D      L + +  +K G+K   +++P 
Sbjct: 29  SAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPD 88

Query: 229 YGFGE 233
             FG 
Sbjct: 89  AAFGV 93

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 74.7 bits (184), Expect = 3e-16
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 12/86 (13%)

Query: 389 DMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKV 448
                    +  + +++GN LFK G Y  A   Y +A   +  D +  D         + 
Sbjct: 18  PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQA---LGLDATPQD---------QA 65

Query: 449 ACNLNNAACKLKLKDYKQAEKLCTKV 474
             + N AAC LKL+DY +AE   +K 
Sbjct: 66  VLHRNRAACHLKLEDYDKAETEASKA 91

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 75.4 bits (186), Expect = 3e-16
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
                V + Y     DG   D S     P  +  G G++I G +  ++  + G+     +
Sbjct: 4   AKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62

Query: 114 PPELAYGE 121
               AYG+
Sbjct: 63  GANDAYGQ 70

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
           +  VV +    + +DG +  +   S      ++      +I GL+ A+   +  +   + 
Sbjct: 5   KDLVVSLAYQVRTEDGVLVDE---SPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA 61

Query: 348 IAPEYAFG 355
           +    A+G
Sbjct: 62  VGANDAYG 69

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 173 DEVLVNYEARLEDGMVVGKADG---VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQY 229
             V + Y+ R EDG++V ++     +++    G     L  A++  + G+K  +AV    
Sbjct: 7   LVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAND 66

Query: 230 GFGE 233
            +G+
Sbjct: 67  AYGQ 70

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 74.7 bits (184), Expect = 3e-16
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 13/81 (16%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRST-------------PFKFTLGQGNVIKGWDIGI 100
           + G +++V Y G L  G  FD+S +                P +F +G+G +I+G++  +
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 101 KTMKKGENAVFTIPPELAYGE 121
             M+ G+     IP E AYG 
Sbjct: 63  LDMEVGDEKTVKIPAEKAYGN 83

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 11/79 (13%)

Query: 288 EGAVVKVKLIGKLQDGTVF-----------VKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +G  +KV  IGKL+ G VF                  E +  EF   E Q+I G + AV+
Sbjct: 4   KGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVL 63

Query: 337 TMKKNEVALLTIAPEYAFG 355
            M+  +   + I  E A+G
Sbjct: 64  DMEVGDEKTVKIPAEKAYG 82

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 74.7 bits (184), Expect = 8e-16
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
                V + Y     DG   D S     P  +  G G++I G +  ++  + G+     +
Sbjct: 4   AKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62

Query: 114 PPELAYGE 121
               AYG+
Sbjct: 63  GANDAYGQ 70

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
           +  VV +    + +DG +  +   S      ++      +I GL+ A+   +  +   + 
Sbjct: 5   KDLVVSLAYQVRTEDGVLVDE---SPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA 61

Query: 348 IAPEYAFG 355
           +    A+G
Sbjct: 62  VGANDAYG 69

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 173 DEVLVNYEARLEDGMVVGKADG---VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQY 229
             V + Y+ R EDG++V ++     +++    G     L  A++  + G+K  +AV    
Sbjct: 7   LVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAND 66

Query: 230 GFGE 233
            +G+
Sbjct: 67  AYGQ 70

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 70.7 bits (174), Expect = 9e-15
 Identities = 16/74 (21%), Positives = 25/74 (33%)

Query: 48  EGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGE 107
           +  D         + Y       +    S     P +F +G   +I G +  +   + GE
Sbjct: 2   QNHDLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGE 61

Query: 108 NAVFTIPPELAYGE 121
                I PE AYG 
Sbjct: 62  WEEVVIAPEEAYGV 75

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 287 NEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346
           +      ++   + Q  ++ +    +  ++  EF     Q+I GL++AV+  +  E   +
Sbjct: 8   SIKQAALIEYEVREQGSSIVLDS--NISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEV 65

Query: 347 TIAPEYAFG 355
            IAPE A+G
Sbjct: 66  VIAPEEAYG 74

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} PDB: 3pra_A Length = 157

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGI 100
           E G  V++ Y G + DG  FD++ +                P     G+G V+ G D  I
Sbjct: 3   EKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61

Query: 101 KTMKKGENAVFTIPPELAYGE 121
             M  GE     +PPE A+G+
Sbjct: 62  LEMDVGEEREVVLPPEKAFGK 82

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Length = 158

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
                V + YT  + +G   D          +  G  N+I G +  ++  ++GE     +
Sbjct: 4   GQDKVVTIRYTLQV-EGEVLDQG-----ELSYLHGHRNLIPGLEEALEGREEGEAFQAHV 57

Query: 114 PPELAYGE 121
           P E AYG 
Sbjct: 58  PAEKAYGP 65

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Length = 231

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGI 100
           E G  V++ Y G + DG  FD++ +                P     G+G V+ G D  I
Sbjct: 3   EKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61

Query: 101 KTMKKGENAVFTIPPELAYGE 121
             M  GE     +PPE A+G+
Sbjct: 62  LEMDVGEEREVVLPPEKAFGK 82

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 15/84 (17%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA 449
           + +EE    A + K +GN   K   +  A   Y KA   IE + +        A      
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKA---IELNPAN-------AVYF--- 49

Query: 450 CNLNNAACKLKLKDYKQAEKLCTK 473
              N AA   KL +Y  A + C +
Sbjct: 50  --CNRAAAYSKLGNYAGAVQDCER 71

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 15/82 (18%)

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN 451
            +  ++ A + K Q N  FKA  Y  A K Y +A   IE +          A        
Sbjct: 6   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQA---IELN-------PSNAIYYG---- 51

Query: 452 LNNAACKLKLKDYKQAEKLCTK 473
            N +   L+ + Y  A    T+
Sbjct: 52  -NRSLAYLRTECYGYALGDATR 72

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444
                 ++    + A   K +GN  F+ G Y +A K Y +A   I+ +        K AK
Sbjct: 2   GHHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEA---IKRN-------PKDAK 51

Query: 445 ALKVACNLNNAACKLKLKDYKQAEKLCTK 473
                   N AAC  KL +++ A K C +
Sbjct: 52  LYS-----NRAACYTKLLEFQLALKDCEE 75

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 15/77 (19%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           E A ++K +GN  FK G Y  A + Y +A   ++ D        + A         N AA
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEA---VKRD-------PENAILYS-----NRAA 55

Query: 457 CKLKLKDYKQAEKLCTK 473
           C  KL ++++A   C  
Sbjct: 56  CLTKLMEFQRALDDCDT 72

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 15/81 (18%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
             K  +A + KEQGN LF   KY  A+  Y +A   I  +          A         
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRA---ITRN-------PLVAVYYT----- 47

Query: 453 NNAACKLKLKDYKQAEKLCTK 473
           N A C LK++  +QA   C +
Sbjct: 48  NRALCYLKMQQPEQALADCRR 68

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 15/78 (19%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA 455
           +    K+KEQGN+LFK G Y  A   Y++    I           +           N A
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQL---ITAQ-------PQNPVGYS-----NKA 45

Query: 456 ACKLKLKDYKQAEKLCTK 473
              +KL +Y QA ++C +
Sbjct: 46  MALIKLGEYTQAIQMCQQ 63

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 17/83 (20%)

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN 451
           +    +AA  +K+ GN  +K   + +A   Y+KA++    + +F                
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF---------------- 44

Query: 452 LNN-AACKLKLKDYKQAEKLCTK 473
            NN AA   + K + +  + C K
Sbjct: 45  YNNKAAVYFEEKKFAECVQFCEK 67

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 15/78 (19%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA 455
           +E   + KE+GN     G    A + Y +A   I+ D                    N +
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEA---IKLD-------PHNHVLYS-----NRS 45

Query: 456 ACKLKLKDYKQAEKLCTK 473
           A   K  DY++A +   K
Sbjct: 46  AAYAKKGDYQKAYEDGCK 63

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 17/78 (21%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-A 455
           + A K+KE GN  +K   +  A K Y+KA +    + ++                + N A
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY----------------ITNQA 45

Query: 456 ACKLKLKDYKQAEKLCTK 473
           A   +  DY +  +LC K
Sbjct: 46  AVYFEKGDYNKCRELCEK 63

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 15/75 (20%)

Query: 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK 458
           A + + +G   F    +  A K Y +    I+          + A+        N AA  
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEM---IKRA-------PEDARGYS-----NRAAAL 48

Query: 459 LKLKDYKQAEKLCTK 473
            KL  + +A   C K
Sbjct: 49  AKLMSFPEAIADCNK 63

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 17/84 (20%)

Query: 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVAC 450
            +      + K K +GN      +Y++A   Y +A   +                     
Sbjct: 3   RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQA---LSIAP-------------ANPI 46

Query: 451 NLNN-AACKLKLKDYKQAEKLCTK 473
            L+N AA       +++A +    
Sbjct: 47  YLSNRAAAYSASGQHEKAAEDAEL 70

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 92/620 (14%), Positives = 164/620 (26%), Gaps = 192/620 (30%)

Query: 4   DFDIPAANEMD---------------ADMDLPDDAPMMK-VGEEKEIGNQGLKKKLVKEG 47
           DF+     E                  + D  D   M K +  ++EI        ++   
Sbjct: 8   DFET---GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI------DHIIMSK 58

Query: 48  EG--------W---DTPEN------GDEVEVHYT-----------GTLLDGTQFDSSRDR 79
           +         W      E        + + ++Y               +    +   RDR
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 80  --STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPE---LAYGESGSPPTIPPNATL 134
             +    F   + NV +     ++   K   A+  + P    L  G  GS  T       
Sbjct: 119 LYNDNQVFA--KYNVSR-----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 135 QFDVELLS-------WTSVKDICKDGGIIKKILK-----------EGEKWENPK----DL 172
               ++         W ++K+      +++ + K             +   N K     +
Sbjct: 172 L-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 173 DEVLVNY--EARLEDGMVVGKADGVE-------FTVKDGHFCPTLAKAVKTMKKG----- 218
              L         E+ ++V     V+       F +     C  L   + T  K      
Sbjct: 231 QAELRRLLKSKPYENCLLV--LLNVQNAKAWNAFNLS----CKIL---LTTRFKQVTDFL 281

Query: 219 ----EKVLLAVKPQYGFGEK------GKSASGNEGAVPPNAT----LQIAL--ELVS--- 259
                  +                   K        +P         ++++  E +    
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 260 --WKTVSEITDDK--KVIKKILKEGDGFE-RP--------NEGAVVKVKLIGKL------ 300
             W     +  DK   +I+  L   +  E R            A +   L+  +      
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 301 QDGTVFVKKGHSE---EEQLFEFKTDEEQVIDGLDRAVITMKKNEVAL-LTIAPEYAFGS 356
            D  V V K H     E+Q  E        I  +   +    +NE AL  +I   Y    
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTI----SIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 357 AESQQELAVVPPNSTV------HYEVELVSFEKEKESWDMNT---------EEKIEAAG- 400
                +L     +         H    L + E   E   +           E+KI     
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHH----LKNIEHP-ERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 401 ---KKKEQGNTLFKAGKY----ARASKRYEKAVKYIEYDTSFGDEEK----KQAKALKVA 449
                    NTL +   Y         +YE+ V  I  D     EE     K    L++A
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL-DFLPKIEENLICSKYTDLLRIA 571

Query: 450 CNLNNAACKLKLKDYKQAEK 469
             L      +  + +KQ ++
Sbjct: 572 --LMAEDEAIFEEAHKQVQR 589

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 15/76 (19%)

Query: 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC 457
           +A + KEQGN LF   KY  A+  Y +A+        +                 N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YTNRALC 47

Query: 458 KLKLKDYKQAEKLCTK 473
            LK++  +QA   C +
Sbjct: 48  YLKMQQPEQALADCRR 63

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 11/80 (13%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           +++   K  E    L + G+Y  A+ +YE     ++ + S  +      ++      +  
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSVAEY---TVRSK---ERI-- 278

Query: 455 AACKLKLKDYKQAEKLCTKV 474
             C  K +   +A ++C++V
Sbjct: 279 CHCFSKDEKPVEAIRICSEV 298

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 17/83 (20%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
            + +    K  E G  L  AG+ A A  ++  A   ++ D                    
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAA---VDGDPDN-------------YIAY 63

Query: 453 NN-AACKLKLKDYKQAEKLCTKV 474
              A   L +   K A    TKV
Sbjct: 64  YRRATVFLAMGKSKAALPDLTKV 86

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           +++   K  E    L + G+Y  A+ +YE     ++ + S             V      
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSI--------AEYTVRSKERI 301

Query: 455 AACKLKLKDYKQAEKLCTKV 474
             C  K +   +A ++C++V
Sbjct: 302 CHCFSKDEKPVEAIRVCSEV 321

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 15/78 (19%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA 455
           ++ A + K Q N  FKA  Y  A K Y +A++    +  +                 N +
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY---------------YGNRS 47

Query: 456 ACKLKLKDYKQAEKLCTK 473
              L+ + Y  A    T+
Sbjct: 48  LAYLRTECYGYALGDATR 65

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 3/84 (3%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA 449
           M   +++  A            AG+Y  A+    +A   +E   +   EE          
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAF 58

Query: 450 CNLNNAACKLKLKDYKQAEKLCTK 473
           C+   A     L+ + +A     K
Sbjct: 59  CHAGLAEALAGLRSFDEALHSADK 82

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 18/101 (17%)

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
           +        + K    ++  ++   A + K +GN  F A  +  A K Y+ A   IE D 
Sbjct: 3   HMNGEPDIAQLKG---LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYA---IELDP 56

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474
           +                  N +AC +   D ++  +  TK 
Sbjct: 57  NEPV------------FYSNISACYISTGDLEKVIEFTTKA 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	492
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.97
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.9
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.9
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.9
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.9
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.9
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.9
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.9
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.9
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.9
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.89
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.89
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.89
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.89
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.89
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.89
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.89
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.88
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.88
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.88
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.88
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.88
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.88
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.88
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.88
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.88
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.87
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.87
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.87
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.87
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.87
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.87
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.87
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.87
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.87
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.87
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.87
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.86
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.86
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.85
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.85
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.85
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.85
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.85
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.84
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.84
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.83
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.82
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.81
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.81
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.79
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.78
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.78
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.77
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.77
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.76
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.76
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.73
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.68
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.62
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.6
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.57
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.57
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.57
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.53
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.53
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.53
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.52
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.44
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.38
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.31
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.22
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.2
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.2
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.1
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.1
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.0
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.94
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.88
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.73
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.72
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.68
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.56
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.52
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.48
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.48
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.47
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.44
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.43
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.42
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.39
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.37
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.36
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.33
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.28
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.28
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.26
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.26
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.22
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.17
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.17
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.15
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.14
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.13
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.12
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.1
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.1
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.1
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.07
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.06
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.04
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.04
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.03
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.01
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.99
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.98
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.93
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.93
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.93
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.91
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.9
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.9
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.89
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.88
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	97.87
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.86
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.84
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.82
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.8
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.8
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.79
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.79
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.78
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.77
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.75
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.73
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.73
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.72
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.71
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	97.69
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.67
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.66
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.65
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.65
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.64
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.63
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.62
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.61
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.58
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.58
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.57
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.55
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.54
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.48
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.45
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.45
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.44
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.44
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.44
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.42
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.38
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.37
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.36
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.35
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.34
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.32
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.32
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.29
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.29
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.29
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.28
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.28
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.27
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.27
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.26
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.26
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.26
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.25
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.25
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.25
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.23
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.22
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.21
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.2
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.2
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.19
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.16
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.14
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.12
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.1
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.1
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.03
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.02
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.98
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.98
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	96.98
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.97
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.94
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.9
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.89
4g1t_A	472	Interferon-induced protein with tetratricopeptide	96.87
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.86
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.86
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.85
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.83
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.8
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.79
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.79
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.78
4g1t_A	472	Interferon-induced protein with tetratricopeptide	96.77
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.72
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.71
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.63
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.6
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.6
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.56
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.56
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.55
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.46
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.43
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.43
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.38
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.34
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.33
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.29
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.22
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.12
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.12
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.05
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.92
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	95.86
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.76
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	95.76
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	95.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.62
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	95.52
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.36
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.35
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.34
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.31
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	95.3
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.21
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	95.16
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.14
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	95.01
1klx_A	138	Cysteine rich protein B; structural genomics, heli	94.95
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.64
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	94.56
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.56
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	94.45
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	94.39
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	94.03
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	93.81
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.37
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	93.09
1klx_A	138	Cysteine rich protein B; structural genomics, heli	93.02
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	93.02
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.0
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	92.66
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	92.46
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	92.31
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	92.24
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	92.19
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	92.05
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	91.41
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	91.32
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	91.13
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	90.28
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	89.89
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	89.11
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.99
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	88.98
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	88.9
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	88.58
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	88.46
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	88.4
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	86.89
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	86.83
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	86.66
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	85.47
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	83.49
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	81.32
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	81.1
2wb7_A	526	PT26-6P; extra chromosomal elements, unknown funct	80.22

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=6.5e-68  Score=530.42  Aligned_cols=354  Identities=81%  Similarity=1.271  Sum_probs=223.4

Q ss_pred             ccceeeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCcc
Q 011164           28 VGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGE  107 (492)
Q Consensus        28 ~~~~~~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge  107 (492)
                      ++++..++++|++|+++++|+|+..|..||.|.+||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|+
T Consensus         2 ~~~~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~~~lG~g~~i~g~e~~l~gm~~Ge   81 (356)
T 3jxv_A            2 VGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGE   81 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEcccCCCcEEEEeCCCccchHHHHHHhcCCCCC
Confidence            56777889999999999999997789999999999999999999999999888999999999999999999999999999


Q ss_pred             EEEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEeecccccccccceeeeeecCcccCCCCCcceEEEEEEEEcCCCc
Q 011164          108 NAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM  187 (492)
Q Consensus       108 ~~~~~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~l~~g~  187 (492)
                      +++|+|||++|||+.+.++.||++++|+|+|+|+++..+.++..|..+.++++..|.|+.+|..++.|+|||+++++||+
T Consensus        82 ~~~~~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt  161 (356)
T 3jxv_A           82 NALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGT  161 (356)
T ss_dssp             ------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSC
T ss_pred             EEEEEEChHHhCCCCCCCCCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCC
Confidence            99999999999999999889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeecCeeeEeCCCCccchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeee
Q 011164          188 VVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT  267 (492)
Q Consensus       188 ~~~~~~~~~~~~g~~~~~~~l~~~l~~m~~ge~~~i~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~  267 (492)
                      +++++.++.|.+|++++++||+.+|.+|++||+++++|||+|+||+.|++..+....|||+++|.|+|+|++|..+.++.
T Consensus       162 ~~~~~~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~  241 (356)
T 3jxv_A          162 VVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIG  241 (356)
T ss_dssp             EEEEEEEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEES
T ss_pred             EEeccCCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccc
Confidence            99999999999999999999999999999999999999999999999998777677899999999999999999999999


Q ss_pred             CCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEE
Q 011164          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (492)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~  347 (492)
                      .|++++++++++|.|..+|..||.|+|||++++.||++|+++.. ...+|+.|.+|.+++++||+.+|.+|++||+++|.
T Consensus       242 ~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~fd~~~~-~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~  320 (356)
T 3jxv_A          242 DDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGH-DEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVT  320 (356)
T ss_dssp             TTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEEEEESC-TTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEE
T ss_pred             cccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEEeeccc-cCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEE
Confidence            99999999999999988999999999999999999999998742 35789999999999999999999999999999999


Q ss_pred             ECCCCccCCCccccccccCCCCccEEEEEEEeeeee
Q 011164          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (492)
Q Consensus       348 ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~  383 (492)
                      |||++|||..+... ...|||+++|+|+|+|++|.+
T Consensus       321 ip~~~aYG~~~~~~-~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          321 IPPEYAYGSTESKQ-DAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             ECGGGTTTTSCEES-SSEECTTCCEEEEEEEEEEEC
T ss_pred             EChHHccCCCCcCC-CCcCCcCCeEEEEEEEEEEEc
Confidence            99999999887532 256999999999999999975

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=3.5e-50  Score=417.82  Aligned_cols=329  Identities=40%  Similarity=0.702  Sum_probs=281.0

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEec
Q 011164           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (492)
Q Consensus        35 ~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~  114 (492)
                      +++|++|+++++|+|...|..||.|.|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~  108 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK  108 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence            78899999999999955599999999999999999999999998788999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCceEEEEEEEEEeecccccccccceeeeeecCcccCCCCCcceEEEEEEEEcCCCcEEeeecC
Q 011164          115 PELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADG  194 (492)
Q Consensus       115 ~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~l~~g~~~~~~~~  194 (492)
                      |+++||..+.++.||++++++|+|+|+++...                                                
T Consensus       109 ~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~------------------------------------------------  140 (457)
T 1kt0_A          109 PEYAYGSAGSLPKIPSNATLFFEIELLDFKGE------------------------------------------------  140 (457)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE------------------------------------------------
T ss_pred             hHHhccccCCCCCCCCCCcEEEEEeeceeecc------------------------------------------------
Confidence            99999999988889999999999998887420                                                


Q ss_pred             eeeEeCCCCccchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeeCCccEEE
Q 011164          195 VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIK  274 (492)
Q Consensus       195 ~~~~~g~~~~~~~l~~~l~~m~~ge~~~i~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~v~k  274 (492)
                                                                                            ++..|+++.+
T Consensus       141 ----------------------------------------------------------------------~~~~dg~~~k  150 (457)
T 1kt0_A          141 ----------------------------------------------------------------------DLFEDGGIIR  150 (457)
T ss_dssp             ----------------------------------------------------------------------ETTSSSSEEE
T ss_pred             ----------------------------------------------------------------------cccCCcceEE
Confidence                                                                                  1113567888


Q ss_pred             EEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCc---ccchhHHHHHhccCcCcEEEEEECCC
Q 011164          275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE---QVIDGLDRAVITMKKNEVALLTIAPE  351 (492)
Q Consensus       275 ~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~---~~~~gle~~l~~m~~Ge~~~i~ip~~  351 (492)
                      +++++|.|..+|..|+.|++||++++ +|++|+++       ++.|.+|+|   .++++|+.||..|+.||++.|.++|.
T Consensus       151 ~i~~~g~~~~~p~~g~~V~v~y~g~~-~g~~f~~~-------~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~  222 (457)
T 1kt0_A          151 RTKRKGEGYSNPNEGATVEIHLEGRC-GGRMFDCR-------DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPR  222 (457)
T ss_dssp             EEEECCBCSCCCCTTCEEEEEEEEEE-TTEEEEEE-------EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGG
T ss_pred             EEEecCCCCCCCCCCCEEEEEEEEEe-CCeEEecC-------ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcc
Confidence            99999999889999999999999999 89999763       489999977   48999999999999999999999999


Q ss_pred             CccCCCccccccccCCCCccEEEEEEEeeeeecccCCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164          352 YAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (492)
Q Consensus       352 ~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  431 (492)
                      ++|+..|...  ..|||++.+.|.+.+.++.+....|.+..++....+..++.+|+.+|++++|.+|+..|++|+++...
T Consensus       223 ~ay~~~g~~~--~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~  300 (457)
T 1kt0_A          223 YGFGEAGKPK--FGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM  300 (457)
T ss_dssp             GTTCSSCBGG--GTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             cccCCCCCcc--cCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Confidence            9999988753  46999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             cCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeecc
Q 011164          432 DTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYAR  491 (492)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~~  491 (492)
                      .....++...+...+...+|+|+|.||+++++|++|+.+|++||+++|+|.+||||+..+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a  360 (457)
T 1kt0_A          301 EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA  360 (457)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            666677777888999999999999999999999999999999999999999999987643

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=1.5e-40  Score=319.57  Aligned_cols=234  Identities=46%  Similarity=0.808  Sum_probs=206.0

Q ss_pred             ceeee--cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCcc
Q 011164           30 EEKEI--GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGE  107 (492)
Q Consensus        30 ~~~~~--~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge  107 (492)
                      ....+  +++|++|+++++|+|...|..||.|.|||++++.||++|++|++++.|+.|.+|.+++++||+++|.+|++|+
T Consensus        42 ~~di~~~~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge  121 (280)
T 1q1c_A           42 GVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGE  121 (280)
T ss_dssp             CEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTC
T ss_pred             ccccccCCCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCC
Confidence            33444  6889999999999995559999999999999999999999999877899999999999999999999999999


Q ss_pred             EEEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEeecccccccccceeeeeecCcccCCCCCcceEEEEEEEEcCCCc
Q 011164          108 NAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM  187 (492)
Q Consensus       108 ~~~~~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~l~~g~  187 (492)
                      +++|.|||++|||..+.++.||++++++|+|+|+++... ++                                      
T Consensus       122 ~~~v~ipp~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~~-~~--------------------------------------  162 (280)
T 1q1c_A          122 VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGE-DL--------------------------------------  162 (280)
T ss_dssp             EEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-EC--------------------------------------
T ss_pred             EEEEEECcHHhCCCcCccCCCCCCCcEEEEEEeeeeccc-cc--------------------------------------
Confidence            999999999999999988889999999999999887421 00                                      


Q ss_pred             EEeeecCeeeEeCCCCccchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeee
Q 011164          188 VVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT  267 (492)
Q Consensus       188 ~~~~~~~~~~~~g~~~~~~~l~~~l~~m~~ge~~~i~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~  267 (492)
                                                            .+                                       .
T Consensus       163 --------------------------------------~~---------------------------------------~  165 (280)
T 1q1c_A          163 --------------------------------------TE---------------------------------------E  165 (280)
T ss_dssp             --------------------------------------CT---------------------------------------T
T ss_pred             --------------------------------------cc---------------------------------------c
Confidence                                                  00                                       0


Q ss_pred             CCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcc---cchhHHHHHhccCcCcEE
Q 011164          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMKKNEVA  344 (492)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~---~~~gle~~l~~m~~Ge~~  344 (492)
                      .|+++.++++++|.|...|..||.|+|||++++ +|++|++       .++.|.+|.++   +++||+.+|.+|++||++
T Consensus       166 ~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-dG~~fd~-------~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~  237 (280)
T 1q1c_A          166 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQ-------RELRFEIGEGENLDLPYGLERAIQRMEKGEHS  237 (280)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-TTEEEEE-------EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEE
T ss_pred             cccceeEEeeecccccccccCCceEEEEEEEEe-CCEEEec-------CCeEEEecCCcccccchhHHHHHhCCCCCcEE
Confidence            356799999999999768999999999999998 8999975       37999999988   599999999999999999


Q ss_pred             EEEECCCCccCCCccccccccCCCCccEEEEEEEeeeeecccCCC
Q 011164          345 LLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWD  389 (492)
Q Consensus       345 ~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~  389 (492)
                      +|.|||+++||..+.+.  ..|||+++++|+|+|++|.+.++.|+
T Consensus       238 ~v~ip~~~~yG~~~~~~--~~IP~~~~l~f~V~L~~i~~~~~~W~  280 (280)
T 1q1c_A          238 IVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWE  280 (280)
T ss_dssp             EEEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEEECCCC---
T ss_pred             EEEEChhHcCCcCCCcc--CccCCCCeEEEEEEEEEEeCCCCCCC
Confidence            99999999999887542  25999999999999999999888884

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=3.5e-35  Score=293.52  Aligned_cols=220  Identities=39%  Similarity=0.688  Sum_probs=205.4

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEec
Q 011164           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (492)
Q Consensus        35 ~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~  114 (492)
                      .+.++.++++++|.|+..|..||.|.+||++++.||++|+++    .++.|.+|.+++++||+.+|.+|++||+++|+||
T Consensus       125 ~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~----~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~  200 (356)
T 3jxv_A          125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS----EGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK  200 (356)
T ss_dssp             SSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEE----EEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEEC
T ss_pred             cCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEecc----CCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEC
Confidence            568999999999999899999999999999999999999998    3799999999999999999999999999999999


Q ss_pred             CCcccCCCCCCC-----CCCCCCceEEEEEEEEEeecccccccccceeeeeecCcccCCCCCcceEEEEEEEEcCCCcEE
Q 011164          115 PELAYGESGSPP-----TIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV  189 (492)
Q Consensus       115 ~~~ayg~~~~~~-----~i~~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~l~~g~~~  189 (492)
                      |+++||+.+.+.     .||+++.|.|+|+|++|....++..|.++.++++..|+|+..+..++.|+|||++++.+|++|
T Consensus       201 p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~f  280 (356)
T 3jxv_A          201 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVF  280 (356)
T ss_dssp             GGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEE
T ss_pred             hHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEE
Confidence            999999998764     699999999999999999988888899999999999999999999999999999999999999


Q ss_pred             eee-----cCeeeEeCCCCccchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 011164          190 GKA-----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK  261 (492)
Q Consensus       190 ~~~-----~~~~~~~g~~~~~~~l~~~l~~m~~ge~~~i~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (492)
                      +++     +|+.|.+|.+++++||+++|.+|+.||++++.|||+++||+.+...   ...||++++|.|+|+|+++.
T Consensus       281 d~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~---~~~Ip~~~~l~f~vel~~~~  354 (356)
T 3jxv_A          281 LKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQ---DAIVPPNSTVIYEVELVSFV  354 (356)
T ss_dssp             EEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTSCEES---SSEECTTCCEEEEEEEEEEE
T ss_pred             eeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEEEChHHccCCCCcCC---CCcCCcCCeEEEEEEEEEEE
Confidence            865     6799999999999999999999999999999999999999876421   14689999999999999875

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=6.7e-33  Score=276.41  Aligned_cols=219  Identities=33%  Similarity=0.480  Sum_probs=191.9

Q ss_pred             CccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcC-CcEEEEcCCCCCcccEEEEcCCc-ccchhHHHHHhccCcCcEEEE
Q 011164          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALL  346 (492)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~-g~~~d~~~~~~~~~~~~~~lg~~-~~~~gle~~l~~m~~Ge~~~i  346 (492)
                      ++++.++++++|.| ..|..||.|+|||++++.+ |++||+++  ....|+.|.+|.+ ++++||+.+|.+|++||++.|
T Consensus        48 ~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~--~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~  124 (338)
T 2if4_A           48 DEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTW--HEQQPIELVLGKEKKELAGLAIGVASMKSGERALV  124 (338)
T ss_dssp             ETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHH--HHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEE
T ss_pred             CCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeeccc--CCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEE
Confidence            56899999999999 6999999999999999985 99999986  3567999999999 899999999999999999999


Q ss_pred             EECCCCccCCCccccccccCCCCccEEEEEEEeeeeecc---cCCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHH
Q 011164          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK---ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYE  423 (492)
Q Consensus       347 ~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~---~~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~  423 (492)
                      .|||.++||..+... .+.||++++++|.|+|+++....   ..|.++.+++++.+..++..|+.+|++++|.+|+..|+
T Consensus       125 ~i~~~~~yg~~~~~~-~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~  203 (338)
T 2if4_A          125 HVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYE  203 (338)
T ss_dssp             EECGGGSSCSSCCCS-SSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHH
T ss_pred             EECHHHhcCCCCCCC-CCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            999999999987631 24699999999999999998744   47889999999999999999999999999999999999


Q ss_pred             HHHHHhcccC--CCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeecc
Q 011164          424 KAVKYIEYDT--SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYAR  491 (492)
Q Consensus       424 ~al~~l~~~~--~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~~  491 (492)
                      +|+++.....  ............+...+|+|+|.||+++++|++|+.+|++||+++|+|.+|+||+..+
T Consensus       204 ~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a  273 (338)
T 2if4_A          204 MAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKA  273 (338)
T ss_dssp             HHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999864321  1112233445566678999999999999999999999999999999999999987643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.97  E-value=6.8e-30  Score=254.45  Aligned_cols=218  Identities=38%  Similarity=0.664  Sum_probs=199.1

Q ss_pred             eeeeeCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcc---cchhHHHHHhccC
Q 011164          263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMK  339 (492)
Q Consensus       263 ~~d~~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~---~~~gle~~l~~m~  339 (492)
                      +.+++.|++++|+|+++|.|..+|..|+.|+|||++++ +|++||++       |+.|.+|.|.   ++++|+.||.+|+
T Consensus        18 ~~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-------~~~f~lG~g~~~~~~~~~e~al~~~~   89 (336)
T 1p5q_A           18 GSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-------ELRFEIGEGENLDLPYGLERAIQRME   89 (336)
T ss_dssp             ----CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-------EEEEETTCGGGGTCCHHHHHHHTTCC
T ss_pred             ceeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-------CeEEEeCCCCccccchHHHHHHhcCC
Confidence            45667899999999999999778999999999999999 99999875       7999999886   5899999999999


Q ss_pred             cCcEEEEEECCCCccCCCccccccccCCCCccEEEEEEEeeeeecccCCCCChHHHHHHHHHHHHhhhHHHHcccHHHHH
Q 011164          340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARAS  419 (492)
Q Consensus       340 ~Ge~~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~  419 (492)
                      +||++.|.++|+++||..|...  ..||+++.+.|++.|.++.+....|.+..+.....+..++..|+.+|+.|+|.+|+
T Consensus        90 ~Ge~~~l~i~p~~ayg~~g~~~--~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~  167 (336)
T 1p5q_A           90 KGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQAL  167 (336)
T ss_dssp             TTCEEEEEECTTTTTTTTCBGG--GTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCeEEEEECCccccCcCCCCc--cCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999988652  35899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeec
Q 011164          420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYA  490 (492)
Q Consensus       420 ~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~  490 (492)
                      ..|++|+++.........+......+....+++|+|.|++++++|++|+.+|++||+++|++.+++|++..
T Consensus       168 ~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  238 (336)
T 1p5q_A          168 LQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGE  238 (336)
T ss_dssp             HHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            99999999987766666677788899999999999999999999999999999999999999999998754

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.90  E-value=2.6e-23  Score=172.64  Aligned_cols=110  Identities=50%  Similarity=0.861  Sum_probs=103.5

Q ss_pred             ecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEe
Q 011164           34 IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI  113 (492)
Q Consensus        34 ~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i  113 (492)
                      .+++|++|+++++|+|...++.||.|.+||++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++|++++|.|
T Consensus         3 ~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~i   82 (113)
T 1yat_A            3 VIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI   82 (113)
T ss_dssp             ECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEE
T ss_pred             CCCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEE
Confidence            47789999999999994339999999999999999999999998877899999999999999999999999999999999


Q ss_pred             cCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011164          114 PPELAYGESGSPPTIPPNATLQFDVELLSW  143 (492)
Q Consensus       114 ~~~~ayg~~~~~~~i~~~~~l~~~vel~~~  143 (492)
                      ||++|||+.+.++.||++++++|+|+|+++
T Consensus        83 p~~~ayG~~~~~~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           83 PGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             CHHHCcCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            999999999987789999999999999886

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.90  E-value=2.5e-23  Score=174.42  Aligned_cols=109  Identities=46%  Similarity=0.832  Sum_probs=102.1

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCC-------CCcEEEEcCCCcccHhHHHHhccCcCcc
Q 011164           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDR-------STPFKFTLGQGNVIKGWDIGIKTMKKGE  107 (492)
Q Consensus        35 ~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~-------~~p~~f~lg~~~~~~gle~~l~~m~~Ge  107 (492)
                      .|+|++|+++++|+|...|+.||.|.+||++++.||++|++|+..       +.|+.|.+|.+++++||+++|.+|++|+
T Consensus         2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   81 (119)
T 3kz7_A            2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE   81 (119)
T ss_dssp             CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence            579999999999999667999999999999999999999999863       4899999999999999999999999999


Q ss_pred             EEEEEecCCcccCCCCCCC-CCCCCCceEEEEEEEEE
Q 011164          108 NAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSW  143 (492)
Q Consensus       108 ~~~~~i~~~~ayg~~~~~~-~i~~~~~l~~~vel~~~  143 (492)
                      +++|.|||++|||+.+.+. .||++++|+|+|+|+++
T Consensus        82 ~~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           82 KARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            9999999999999998864 79999999999999986

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.90  E-value=1.9e-23  Score=178.64  Aligned_cols=112  Identities=55%  Similarity=0.988  Sum_probs=105.5

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEec
Q 011164           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (492)
Q Consensus        35 ~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~  114 (492)
                      +++|++|+++++|+|...|+.||.|.+||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip   91 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   91 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            68999999999999955799999999999999999999999986668999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCceEEEEEEEEEeec
Q 011164          115 PELAYGESGSPPTIPPNATLQFDVELLSWTSV  146 (492)
Q Consensus       115 ~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~~  146 (492)
                      |++|||+.+.++.||++++++|+|+|+++...
T Consensus        92 ~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~~  123 (135)
T 1r9h_A           92 SDYGYGDAGSPPKIPGGATLIFEVELFEWSAE  123 (135)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-
T ss_pred             hHHcCCCCCCCCCcCcCCcEEEEEEEEEeecC
Confidence            99999999988899999999999999999764

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.90  E-value=2.5e-23  Score=179.83  Aligned_cols=110  Identities=53%  Similarity=0.913  Sum_probs=105.5

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEec
Q 011164           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (492)
Q Consensus        35 ~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~  114 (492)
                      .++|++|+++++|+|...|..||.|.|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++||+++|.||
T Consensus        33 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip  112 (144)
T 3o5e_A           33 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK  112 (144)
T ss_dssp             CSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEC
Confidence            68999999999999965899999999999999999999999988789999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011164          115 PELAYGESGSPPTIPPNATLQFDVELLSWT  144 (492)
Q Consensus       115 ~~~ayg~~~~~~~i~~~~~l~~~vel~~~~  144 (492)
                      |++|||..+.++.||++++|+|+|+|+++.
T Consensus       113 p~~aYG~~g~~~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          113 PEYAYGSAGSLPKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             hHHCcCCCCCCCCcCCCCeEEEEEEEEEec
Confidence            999999999888999999999999999985

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.90  E-value=2.2e-23  Score=176.80  Aligned_cols=111  Identities=52%  Similarity=0.906  Sum_probs=105.4

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEec
Q 011164           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (492)
Q Consensus        35 ~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~  114 (492)
                      .++|++|+++++|+|...|+.||.|.|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus        17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip   96 (128)
T 3o5q_A           17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK   96 (128)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            77899999999999955799999999999999999999999987678999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011164          115 PELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (492)
Q Consensus       115 ~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~  145 (492)
                      |++|||+.+.++.||++++|+|+|+|+++..
T Consensus        97 ~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A           97 PEYAYGSAGSLPKIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             hHHcCCCCCCCCCcCCCCEEEEEEEEEEecC
Confidence            9999999998889999999999999999853

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.90  E-value=4.3e-24  Score=182.41  Aligned_cols=126  Identities=36%  Similarity=0.638  Sum_probs=106.4

Q ss_pred             CCCCCCcccccccee--eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEec-CCCEEeecCCCCCcEEEEcCCCcccH
Q 011164           18 DLPDDAPMMKVGEEK--EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQGNVIK   94 (492)
Q Consensus        18 ~~~~~~~~~~~~~~~--~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~-dg~~~~ss~~~~~p~~f~lg~~~~~~   94 (492)
                      ..+...||.+++++.  .++++|++|+++++|+| ..+..||.|.|||++++. +|++|++++.++.|+.|.+|.+++++
T Consensus         5 ~~~~~~~~~~~~~~~~~v~~~~gl~~~vl~~G~g-~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g~~i~   83 (134)
T 3b7x_A            5 DAPGQSLYERLSQRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLW   83 (134)
T ss_dssp             ----CCHHHHHTTTCEESSSSSSEEEEEEECCEE-EECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCCCCH
T ss_pred             cCCCCChhHHhccccceeeCCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCcchhH
Confidence            345678888877776  45899999999999999 678899999999999998 69999999877789999999999999


Q ss_pred             hHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011164           95 GWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (492)
Q Consensus        95 gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~  144 (492)
                      ||+++|.+|++||+++|.|||++|||+.+.++.||++++++|+|+|+++.
T Consensus        84 G~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           84 GMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             HHHHHHHTCEETCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             HHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence            99999999999999999999999999999887899999999999999874

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.90  E-value=3.8e-23  Score=178.71  Aligned_cols=116  Identities=39%  Similarity=0.599  Sum_probs=106.8

Q ss_pred             ceeeee--CCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccC
Q 011164          262 TVSEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMK  339 (492)
Q Consensus       262 ~~~d~~--~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~  339 (492)
                      ...|++  .|++++++++++|.|...|..||.|+|||++++.||++||+++  ....|+.|.+|.+++++||+.+|.+|+
T Consensus        25 ~~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~g~~i~G~e~~l~gm~  102 (144)
T 3o5e_A           25 QGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSH--DRNEPFVFSLGKGQVIKAWDIGVATMK  102 (144)
T ss_dssp             HCEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESG--GGTSCEEEETTSSSSCHHHHHHHTTCC
T ss_pred             ccccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeec--ccCCCeEEEeCCCcccHHHHHHHhCCC
Confidence            346666  6899999999999996689999999999999999999999986  356899999999999999999999999


Q ss_pred             cCcEEEEEECCCCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       340 ~Ge~~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      +||+++|.|||++|||..+.+   +.|||+++|+|+|+|++|.
T Consensus       103 ~Ge~~~v~ipp~~aYG~~g~~---~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          103 KGEICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             BTCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             CCCEEEEEEChHHCcCCCCCC---CCcCCCCeEEEEEEEEEec
Confidence            999999999999999998875   5799999999999999986

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.90  E-value=3.1e-23  Score=185.71  Aligned_cols=129  Identities=34%  Similarity=0.493  Sum_probs=104.2

Q ss_pred             CCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEc-CCcEEEEcCCCCCcccEEEEcCCc-ccchhHHHHHhccCcCcEEE
Q 011164          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVAL  345 (492)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~-~g~~~d~~~~~~~~~~~~~~lg~~-~~~~gle~~l~~m~~Ge~~~  345 (492)
                      .++++.++++++|.| ..|..||.|+|||++++. +|++|++++.  ...|+.|.+|.+ ++++||+.+|.+|++||+++
T Consensus        47 ~~~gl~~~vl~~G~G-~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~--~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~  123 (180)
T 2f4e_A           47 LDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWH--EQQPIELVLGKEKKELAGLAIGVASMKSGERAL  123 (180)
T ss_dssp             EETTEEEEEEECCBS-CCBCTTCEEEEEEEEEETTTCCEEEETTT--TTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEE
T ss_pred             CCCceEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCcEEeccCc--cCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEE
Confidence            356899999999999 799999999999999998 5999999863  568999999999 99999999999999999999


Q ss_pred             EEECCCCccCCCccccccccCCCCccEEEEEEEeeeeeccc---CCCCChHHHHHHHH
Q 011164          346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE---SWDMNTEEKIEAAG  400 (492)
Q Consensus       346 i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~---~~~~~~~e~l~~a~  400 (492)
                      |.|||++|||..+... .+.|||+++|+|+|+|+++.+..+   .|.|+.+|+++.|.
T Consensus       124 v~iPp~~aYG~~g~~~-~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A~  180 (180)
T 2f4e_A          124 VHVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAAD  180 (180)
T ss_dssp             EEECGGGTTTTTCBSS-SSCBCTTCCEEEEEEEEEESCBCCC----------------
T ss_pred             EEECchHhCCcCCccc-CCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhcC
Confidence            9999999999887631 246999999999999999998877   89999999998763

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.90  E-value=8.2e-23  Score=171.28  Aligned_cols=112  Identities=40%  Similarity=0.627  Sum_probs=101.3

Q ss_pred             CccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCC-----CCcccEEEEcCCcccchhHHHHHhccCcCcE
Q 011164          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHS-----EEEQLFEFKTDEEQVIDGLDRAVITMKKNEV  343 (492)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~-----~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~  343 (492)
                      +++++|+++++|+|...|..||.|++||++++.||++||+++..     ....|+.|.+|.+++++||+.+|.+|++||+
T Consensus         3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   82 (119)
T 3kz7_A            3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEK   82 (119)
T ss_dssp             SCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred             CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCE
Confidence            57899999999999767999999999999999999999998631     1248999999999999999999999999999


Q ss_pred             EEEEECCCCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       344 ~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      ++|.|||++|||..+.+.  ..|||+++|+|+|+|++++
T Consensus        83 ~~v~ip~~~aYG~~g~~~--~~Ip~~~~l~f~veL~~i~  119 (119)
T 3kz7_A           83 ARLEIEPEWAYGKKGQPD--AKIPPNTKLIFEVELVDID  119 (119)
T ss_dssp             EEEEECGGGTTCTTCBGG--GTBCTTCCEEEEEEEEEEC
T ss_pred             EEEEECcHHhcCCCCCCC--CccCcCCeEEEEEEEEEeC
Confidence            999999999999988752  4699999999999999874

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.89  E-value=7e-23  Score=173.65  Aligned_cols=115  Identities=39%  Similarity=0.611  Sum_probs=105.0

Q ss_pred             eeee--CCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcC
Q 011164          264 SEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN  341 (492)
Q Consensus       264 ~d~~--~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~G  341 (492)
                      .|+.  .|++++++++++|+|...|..||.|+|||++++.||++||+++  ....|+.|.+|.+++++||+.+|.+|++|
T Consensus        11 ~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~g~~i~G~e~~l~gm~~G   88 (128)
T 3o5q_A           11 EDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSH--DRNEPFVFSLGKGQVIKAWDIGVATMKKG   88 (128)
T ss_dssp             EECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHH--HHTSCEEEETTSSSSCHHHHHHHTTCCTT
T ss_pred             ceecccCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecC--CCCCCEEEEECCCCccHHHHHHHhcCCCC
Confidence            4444  6889999999999996689999999999999999999999885  34679999999999999999999999999


Q ss_pred             cEEEEEECCCCccCCCccccccccCCCCccEEEEEEEeeeee
Q 011164          342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (492)
Q Consensus       342 e~~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~  383 (492)
                      |+++|.|||++|||..+..   +.|||+++|+|+|+|+++..
T Consensus        89 e~~~v~ip~~~aYG~~g~~---~~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A           89 EICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             CEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             CEEEEEEChHHcCCCCCCC---CCcCCCCEEEEEEEEEEecC
Confidence            9999999999999998875   47999999999999999863

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.89  E-value=5.9e-23  Score=168.81  Aligned_cols=106  Identities=51%  Similarity=0.943  Sum_probs=100.0

Q ss_pred             CeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCc
Q 011164           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL  117 (492)
Q Consensus        38 g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~  117 (492)
                      |++|+++++|+|...++.||.|.+||++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++|++++|.|||++
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~   80 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence            78999999999944499999999999999999999999986668999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCceEEEEEEEEE
Q 011164          118 AYGESGSPPTIPPNATLQFDVELLSW  143 (492)
Q Consensus       118 ayg~~~~~~~i~~~~~l~~~vel~~~  143 (492)
                      +||+.+.++.||++++++|+|+|+++
T Consensus        81 ayG~~~~~~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           81 AYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             ccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            99999987789999999999999886

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.89  E-value=9.8e-23  Score=173.41  Aligned_cols=110  Identities=53%  Similarity=0.881  Sum_probs=104.6

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEE
Q 011164           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (492)
Q Consensus        33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~  112 (492)
                      ..+++|++|+++++|+| ..++.||.|.|||++++.||++|++++++++|+.|.+|.+++++||+++|.+|++||+++|.
T Consensus        24 ~~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~  102 (133)
T 2y78_A           24 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT  102 (133)
T ss_dssp             EECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEE
T ss_pred             EECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEE
Confidence            45889999999999999 78999999999999999999999999877789999999999999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011164          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (492)
Q Consensus       113 i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~  143 (492)
                      |||+++||+.+.+..||++++++|+|+|+++
T Consensus       103 ip~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          103 IPPQLGYGARGAGGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             ECcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence            9999999999988789999999999999864

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.89  E-value=1.8e-23  Score=182.49  Aligned_cols=117  Identities=25%  Similarity=0.417  Sum_probs=99.5

Q ss_pred             eecCCCeEEEEEEcccCcCCC--CCCCEEEEEEEEEec--CCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccE
Q 011164           33 EIGNQGLKKKLVKEGEGWDTP--ENGDEVEVHYTGTLL--DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGEN  108 (492)
Q Consensus        33 ~~~~~g~~~~il~~G~G~~~~--~~gd~V~v~Y~~~~~--dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~  108 (492)
                      .++++||+|+++++|+| ..|  .+||.|.|||++++.  ||++||||+++++|+.|.+|.+++|+||+++|.+|++||+
T Consensus         6 ~~~~~Gv~~~vl~~G~G-~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~   84 (165)
T 2lkn_A            6 RLREDGIQKRVIQEGRG-ELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEI   84 (165)
T ss_dssp             HHHTTSCCCCEEECCSS-CCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCE
T ss_pred             cccCCCeEEEEEECCcC-CCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCce
Confidence            35789999999999999 544  589999999999986  4999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcccCCC--------CCCCC-----------------------------CCCCCceEEEEEEEEEeeccccc
Q 011164          109 AVFTIPPELAYGES--------GSPPT-----------------------------IPPNATLQFDVELLSWTSVKDIC  150 (492)
Q Consensus       109 ~~~~i~~~~ayg~~--------~~~~~-----------------------------i~~~~~l~~~vel~~~~~~~~~~  150 (492)
                      ++|+|||++|||..        .....                             ++.+++|+|+|||+++..+....
T Consensus        85 ~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~eye  163 (165)
T 2lkn_A           85 AQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGTYQ  163 (165)
T ss_dssp             EEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTTCC
T ss_pred             EEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCcccc
Confidence            99999999999921        00011                             23347799999999998766543

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.89  E-value=1.6e-22  Score=181.02  Aligned_cols=125  Identities=30%  Similarity=0.574  Sum_probs=112.5

Q ss_pred             CccccccceeeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEec-CCCEEeecCCCCCcEEEEcCCC-cccHhHHHHh
Q 011164           23 APMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQG-NVIKGWDIGI  100 (492)
Q Consensus        23 ~~~~~~~~~~~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~-dg~~~~ss~~~~~p~~f~lg~~-~~~~gle~~l  100 (492)
                      ....+.+.....+++|++|+++++|+| ..|..||.|.|||++++. +|++|++|+.++.|+.|.+|.+ ++++||+++|
T Consensus        35 ~~p~~~~~~~~~~~~gl~~~vl~~G~G-~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G~eeaL  113 (180)
T 2f4e_A           35 NVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGV  113 (180)
T ss_dssp             CSCCCCCSCCEEEETTEEEEEEECCBS-CCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHHHHHHH
T ss_pred             cCCcccCCCcEECCCceEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCchhHHHHHHH
Confidence            333455666677899999999999999 689999999999999998 6999999988789999999999 9999999999


Q ss_pred             ccCcCccEEEEEecCCcccCCCCC--CCCCCCCCceEEEEEEEEEeeccc
Q 011164          101 KTMKKGENAVFTIPPELAYGESGS--PPTIPPNATLQFDVELLSWTSVKD  148 (492)
Q Consensus       101 ~~m~~Ge~~~~~i~~~~ayg~~~~--~~~i~~~~~l~~~vel~~~~~~~~  148 (492)
                      .+|++|++++|.|||+++||..+.  ++.||++++++|+|+|+++..+..
T Consensus       114 ~gMk~Ge~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e  163 (180)
T 2f4e_A          114 ASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE  163 (180)
T ss_dssp             TTCCBTCEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCC
T ss_pred             hCCCCCCEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCcc
Confidence            999999999999999999999986  357999999999999999976443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.89  E-value=3.8e-24  Score=221.84  Aligned_cols=115  Identities=38%  Similarity=0.609  Sum_probs=83.8

Q ss_pred             eeee--CCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcC
Q 011164          264 SEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN  341 (492)
Q Consensus       264 ~d~~--~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~G  341 (492)
                      .|++  .++++.++++++|+|...|..||.|+|||++++.||++||+++  ....|+.|.+|.+++++||+.+|.+|++|
T Consensus        23 ~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~--~~~~p~~~~~g~~~~i~g~~~~l~~m~~G  100 (457)
T 1kt0_A           23 EDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSH--DRNEPFVFSLGKGQVIKAWDIGVATMKRG  100 (457)
T ss_dssp             ----------CEEEC--------CCCBTCEEEEEEEEEC-----CBC--------CEEEETTSTTSCHHHHHHHTTCCTT
T ss_pred             ccccCCCCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccC--CCCCCeEEEeCCcchhhHHHHHHhhCCCC
Confidence            3555  6889999999999996569999999999999999999999886  35689999999999999999999999999


Q ss_pred             cEEEEEECCCCccCCCccccccccCCCCccEEEEEEEeeeee
Q 011164          342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (492)
Q Consensus       342 e~~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~  383 (492)
                      |++.|.|||+++||..|.+   +.||++++++|+|+|++|..
T Consensus       101 e~~~~~i~~~~~yg~~g~~---~~i~~~~~l~~~v~l~~~~~  139 (457)
T 1kt0_A          101 EICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFKG  139 (457)
T ss_dssp             CEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             CEEEEEEChHHhccccCCC---CCCCCCCcEEEEEeeceeec
Confidence            9999999999999988865   57999999999999999875

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.89  E-value=1.1e-22  Score=172.60  Aligned_cols=113  Identities=54%  Similarity=0.963  Sum_probs=104.4

Q ss_pred             eeeecCCCeEEE--EEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccE
Q 011164           31 EKEIGNQGLKKK--LVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGEN  108 (492)
Q Consensus        31 ~~~~~~~g~~~~--il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~  108 (492)
                      ....+++|++++  ++++|+|...++.||.|.++|++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++||+
T Consensus        16 ~~~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~   95 (130)
T 2lgo_A           16 TQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEK   95 (130)
T ss_dssp             SCSSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEE
T ss_pred             cceeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCE
Confidence            335578999999  999999943399999999999999999999999988778999999999999999999999999999


Q ss_pred             EEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011164          109 AVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (492)
Q Consensus       109 ~~~~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~  143 (492)
                      ++|.|||+++||+.+.++.||++++++|+|+|+++
T Consensus        96 ~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           96 ALFTIPYQLAYGERGYPPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             EEEEECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred             EEEEECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            99999999999999988789999999999999874

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.88  E-value=3.7e-22  Score=168.73  Aligned_cols=111  Identities=38%  Similarity=0.668  Sum_probs=103.8

Q ss_pred             eecCCCeEEEEEEccc--CcCCCCCCCEEEEEEEEEec-CCCEEeecCC--CCCcEEEEcCCCcccHhHHHHhccCcCcc
Q 011164           33 EIGNQGLKKKLVKEGE--GWDTPENGDEVEVHYTGTLL-DGTQFDSSRD--RSTPFKFTLGQGNVIKGWDIGIKTMKKGE  107 (492)
Q Consensus        33 ~~~~~g~~~~il~~G~--G~~~~~~gd~V~v~Y~~~~~-dg~~~~ss~~--~~~p~~f~lg~~~~~~gle~~l~~m~~Ge  107 (492)
                      .++++|++|+++++|+  | ..++.||.|.|||++++. ||++|++|+.  .+.|+.|.+|.+++++||+++|.+|++|+
T Consensus         8 ~~~~~gl~~~~l~~g~~~g-~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   86 (125)
T 4dip_A            8 LIPEPEVKIEVLQKPFICH-RKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGE   86 (125)
T ss_dssp             GCCCCCCEEEEEECCSCCS-CCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTC
T ss_pred             EECCCCeEEEEEEcCCCCC-CcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCC
Confidence            4688999999999998  5 889999999999999998 9999999973  45899999999999999999999999999


Q ss_pred             EEEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011164          108 NAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (492)
Q Consensus       108 ~~~~~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~  145 (492)
                      +++|.|||++|||+.+.+ .||++++++|+|+|+++..
T Consensus        87 ~~~~~ip~~~aYG~~g~~-~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           87 KRKLIIPPALGYGKEGKG-KIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             EEEEEECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEEChHHhcCCCCCC-CCCCCCeEEEEEEEEEEEc
Confidence            999999999999999966 8999999999999999864

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.88  E-value=3.1e-22  Score=171.10  Aligned_cols=117  Identities=39%  Similarity=0.626  Sum_probs=105.8

Q ss_pred             eeeee--CCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCc
Q 011164          263 VSEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK  340 (492)
Q Consensus       263 ~~d~~--~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~  340 (492)
                      +.|++  .+++++++++++|+|...|..||.|++||++++.||++||+++  ....|+.|.+|.+++++||+.+|.+|++
T Consensus         5 ~~dv~~~~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~~~vi~G~e~~l~gm~~   82 (135)
T 1r9h_A            5 KIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSR--DRGDQFSFNLGRGNVIKGWDLGVATMTK   82 (135)
T ss_dssp             CEECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHH--HHTSCEEEETTTTSSCHHHHHHHTTCCB
T ss_pred             ceecccCCCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecC--cCCCCEEEEeCCCCccHHHHHHHhcCCC
Confidence            34666  7899999999999996579999999999999999999999885  2358999999999999999999999999


Q ss_pred             CcEEEEEECCCCccCCCccccccccCCCCccEEEEEEEeeeeec
Q 011164          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE  384 (492)
Q Consensus       341 Ge~~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~~  384 (492)
                      ||+++|.|||++|||..+.+   ..||++++|+|+|+|++|.+.
T Consensus        83 Ge~~~v~ip~~~aYG~~g~~---~~Ip~~~~l~f~v~l~~i~~~  123 (135)
T 1r9h_A           83 GEVAEFTIRSDYGYGDAGSP---PKIPGGATLIFEVELFEWSAE  123 (135)
T ss_dssp             TCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC-
T ss_pred             CCEEEEEEChHHcCCCCCCC---CCcCcCCcEEEEEEEEEeecC
Confidence            99999999999999998764   579999999999999999854

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.88  E-value=6.2e-22  Score=168.20  Aligned_cols=112  Identities=46%  Similarity=0.850  Sum_probs=101.0

Q ss_pred             ecCC-CeEEEEEEcc-cC-cCCCCCCCEEEEEEEEEe-cCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEE
Q 011164           34 IGNQ-GLKKKLVKEG-EG-WDTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA  109 (492)
Q Consensus        34 ~~~~-g~~~~il~~G-~G-~~~~~~gd~V~v~Y~~~~-~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~  109 (492)
                      ++++ +++++++++| +| ...++.||.|.|||++++ .||++|++|+.++.|+.|.+|.+++++||+++|.+|++|+++
T Consensus        12 ~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge~~   91 (129)
T 2vn1_A           12 LTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKC   91 (129)
T ss_dssp             CSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTTCEE
T ss_pred             ECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCCCcCHHHHHHHhCCCCCCEE
Confidence            3444 5566899976 44 278999999999999999 799999999877789999999999999999999999999999


Q ss_pred             EEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011164          110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (492)
Q Consensus       110 ~~~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~  145 (492)
                      +|.|||++|||+.+.++.||++++++|+|+|+++..
T Consensus        92 ~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           92 LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             EEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence            999999999999998778999999999999999864

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.88  E-value=2.7e-22  Score=169.56  Aligned_cols=115  Identities=21%  Similarity=0.377  Sum_probs=103.7

Q ss_pred             eeeCCccEEEEEEecCC--CCCCCCCCCEEEEEEEEEEc-CCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcC
Q 011164          265 EITDDKKVIKKILKEGD--GFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN  341 (492)
Q Consensus       265 d~~~d~~v~k~il~~G~--g~~~p~~g~~V~v~y~~~~~-~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~G  341 (492)
                      ....+.++.++++++|.  | ..|..||.|+|||++++. ||++||+++......|+.|.+|.+++++||+.+|.+|++|
T Consensus         7 ~~~~~~gl~~~~l~~g~~~g-~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~G   85 (125)
T 4dip_A            7 ALIPEPEVKIEVLQKPFICH-RKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVG   85 (125)
T ss_dssp             GGCCCCCCEEEEEECCSCCS-CCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTT
T ss_pred             eEECCCCeEEEEEEcCCCCC-CcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCC
Confidence            34567899999999998  5 899999999999999998 9999999853224689999999999999999999999999


Q ss_pred             cEEEEEECCCCccCCCccccccccCCCCccEEEEEEEeeeeec
Q 011164          342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE  384 (492)
Q Consensus       342 e~~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~~  384 (492)
                      |+++|.|||++|||..+..    .|||+++|+|+|+|+++.+.
T Consensus        86 e~~~~~ip~~~aYG~~g~~----~Ip~~~~l~f~vel~~i~~~  124 (125)
T 4dip_A           86 EKRKLIIPPALGYGKEGKG----KIPPESTLIFNIDLLEIRNG  124 (125)
T ss_dssp             CEEEEEECGGGTTTTTCBT----TBCTTCCEEEEEEEEEEECC
T ss_pred             CEEEEEEChHHhcCCCCCC----CCCCCCeEEEEEEEEEEEcC
Confidence            9999999999999998753    69999999999999999864

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.88  E-value=5.3e-23  Score=179.48  Aligned_cols=117  Identities=17%  Similarity=0.229  Sum_probs=95.8

Q ss_pred             eCCccEEEEEEecCCCCCCC--CCCCEEEEEEEEEEcC--CcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCc
Q 011164          267 TDDKKVIKKILKEGDGFERP--NEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNE  342 (492)
Q Consensus       267 ~~d~~v~k~il~~G~g~~~p--~~g~~V~v~y~~~~~~--g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge  342 (492)
                      +.++||.|+++++|+| ..|  ..|++|+|||++++.|  |++||||+  ..++|++|.+|.+++|+||+.+|.+|++||
T Consensus         7 ~~~~Gv~~~vl~~G~G-~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~--~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge   83 (165)
T 2lkn_A            7 LREDGIQKRVIQEGRG-ELPDFQDGTKATFHYRTLHSDDEGTVLDDSR--ARGKPMELIIGKKFKLPVWETIVCTMREGE   83 (165)
T ss_dssp             HHTTSCCCCEEECCSS-CCCCCCTTCEEEEECEEECSSSSCCEEEEST--TTTCCEEEESSSSCSCSHHHHHHTTCCTTC
T ss_pred             ccCCCeEEEEEECCcC-CCCCCCCCCEEEEEEEEEEeCCCccEEEecc--cCCCCEEEEecCCCccHHHHHHHhcCccCc
Confidence            3577899999999999 544  5799999999999965  99999997  467899999999999999999999999999


Q ss_pred             EEEEEECCCCccCCC-------cccc---------------------------ccccCCCCccEEEEEEEeeeeeccc
Q 011164          343 VALLTIAPEYAFGSA-------ESQQ---------------------------ELAVVPPNSTVHYEVELVSFEKEKE  386 (492)
Q Consensus       343 ~~~i~ip~~~~yg~~-------~~~~---------------------------~~~~ip~~~~l~~~v~l~~~~~~~~  386 (492)
                      +++|+|||++|||..       ....                           ....+++.++|+|+|||++|+...+
T Consensus        84 ~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~e  161 (165)
T 2lkn_A           84 IAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGT  161 (165)
T ss_dssp             EEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTT
T ss_pred             eEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCcc
Confidence            999999999999931       0000                           0001334478999999999996543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.88  E-value=3.6e-22  Score=198.71  Aligned_cols=118  Identities=31%  Similarity=0.616  Sum_probs=106.9

Q ss_pred             cccceeeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecC-CCEEeecCCCCCcEEEEcCCC-cccHhHHHHhccCc
Q 011164           27 KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLD-GTQFDSSRDRSTPFKFTLGQG-NVIKGWDIGIKTMK  104 (492)
Q Consensus        27 ~~~~~~~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~d-g~~~~ss~~~~~p~~f~lg~~-~~~~gle~~l~~m~  104 (492)
                      ++.....+.++|+.|+++++|+| ..|..||.|.|||++++.+ |++|++|+.++.|+.|.+|.+ ++++||+.+|.+|+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~  117 (338)
T 2if4_A           39 KVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMK  117 (338)
T ss_dssp             CCCSCCEEEETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCC
T ss_pred             CCCcCceeCCCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCC
Confidence            45555667889999999999999 6899999999999999985 999999987678999999999 89999999999999


Q ss_pred             CccEEEEEecCCcccCCCCC--CCCCCCCCceEEEEEEEEEee
Q 011164          105 KGENAVFTIPPELAYGESGS--PPTIPPNATLQFDVELLSWTS  145 (492)
Q Consensus       105 ~Ge~~~~~i~~~~ayg~~~~--~~~i~~~~~l~~~vel~~~~~  145 (492)
                      +||+++|+|||.++||..+.  .+.||++++++|.|+|+.+..
T Consensus       118 ~Ge~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~  160 (338)
T 2if4_A          118 SGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDE  160 (338)
T ss_dssp             BTCEEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEEC
T ss_pred             CCCeEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecC
Confidence            99999999999999999887  357999999999999988754

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.88  E-value=1.1e-22  Score=173.57  Aligned_cols=115  Identities=29%  Similarity=0.507  Sum_probs=99.7

Q ss_pred             ceeeeeCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEc-CCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCc
Q 011164          262 TVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK  340 (492)
Q Consensus       262 ~~~d~~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~-~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~  340 (492)
                      .+.+++.+++++++++++|.| ..+..||.|+|||++++. +|++||+++  ....|+.|.+|.+++++||+.+|.+|++
T Consensus        18 ~~~~v~~~~gl~~~vl~~G~g-~~~~~gd~V~v~Y~g~l~~~G~~fdss~--~~~~p~~f~lG~g~~i~G~e~aL~gm~~   94 (134)
T 3b7x_A           18 RMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNY--FRKTPRLMKLGEDITLWGMELGLLSMRR   94 (134)
T ss_dssp             TCEESSSSSSEEEEEEECCEE-EECCTTCEEEEEEEEECTTCSSCSEEC---------CEEC-CCCCCHHHHHHHHTCEE
T ss_pred             ccceeeCCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCeEEEecC--CCCCCEEEEcCCcchhHHHHHHHhCCCC
Confidence            467888999999999999999 778899999999999998 699999885  2467999999999999999999999999


Q ss_pred             CcEEEEEECCCCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       341 Ge~~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      ||+++|.|||++|||..+.+   +.|||+++|+|+|+|+++.
T Consensus        95 Ge~~~v~ip~~~aYG~~~~~---~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           95 GELARFLFKPNYAYGTLGCP---PLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             TCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             CCEEEEEECHHHCcCCCCCC---CCcCcCCeEEEEEEEEEEe
Confidence            99999999999999998765   4699999999999999986

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.88  E-value=8.3e-22  Score=163.50  Aligned_cols=109  Identities=30%  Similarity=0.498  Sum_probs=99.2

Q ss_pred             CccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEE
Q 011164          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTI  348 (492)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~i  348 (492)
                      +.++.++++++|+|...|..||.|++||++++.||++|++++.  ...|+.|.+|.+++++||+.+|.+|++||+++|.|
T Consensus         5 ~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~--~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~i   82 (113)
T 1yat_A            5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVD--RGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI   82 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTT--TTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEE
T ss_pred             CCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCC--CCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEE
Confidence            5679999999999944499999999999999999999999852  45799999999999999999999999999999999


Q ss_pred             CCCCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          349 APEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       349 p~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      ||++|||..+.+   +.|||+++|+|+|+|+++.
T Consensus        83 p~~~ayG~~~~~---~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           83 PGPYAYGPRGFP---GLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             CGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             CHHHCcCCCCCC---CCcCCCCeEEEEEEEEEeC
Confidence            999999988764   4699999999999999873

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.88  E-value=5.7e-22  Score=162.88  Aligned_cols=107  Identities=32%  Similarity=0.597  Sum_probs=97.5

Q ss_pred             cEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECC
Q 011164          271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAP  350 (492)
Q Consensus       271 ~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~  350 (492)
                      ++.++++++|+|...|..||.|++||++++.||++|++++.  ..+|+.|.+|.+++++||+.+|.+|++||+++|.+||
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~--~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~   78 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD--RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHH--HTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCC--CCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECH
Confidence            58899999999954599999999999999999999998852  3479999999999999999999999999999999999


Q ss_pred             CCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          351 EYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       351 ~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      ++|||..+.+   +.|||+++|+|+|+|++++
T Consensus        79 ~~ayG~~~~~---~~Ip~~~~l~f~v~l~~v~  107 (107)
T 2ppn_A           79 DYAYGATGHP---GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             GGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             HHccCCCCCC---CCcCCCCeEEEEEEEEEeC
Confidence            9999988764   4699999999999999874

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.87  E-value=3.6e-22  Score=175.91  Aligned_cols=111  Identities=43%  Similarity=0.712  Sum_probs=104.4

Q ss_pred             eeecCCCeEEEEEEcccCcCC-CCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEE
Q 011164           32 KEIGNQGLKKKLVKEGEGWDT-PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (492)
Q Consensus        32 ~~~~~~g~~~~il~~G~G~~~-~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~  110 (492)
                      ...+++|++|+++++|+| .. |..||.|.|||++++.||++|++|+.++.|+.|.+|  ++++||+++|.+|++|++++
T Consensus        32 ~~~~~sGl~~~vl~~G~G-~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Ge~~~  108 (167)
T 1jvw_A           32 AVKLPSGLVFQRIARGSG-KRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPN--EVIKGWTEALQLMREGDRWR  108 (167)
T ss_dssp             EEECTTSCEEEEEECCCC-SBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGG--GSCHHHHHHHTTCCTTCEEE
T ss_pred             cEECCCCEEEEEEEcCCC-CcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEeC--chhHHHHHHHcCCCCCCEEE
Confidence            356899999999999999 66 999999999999999999999999876789999995  89999999999999999999


Q ss_pred             EEecCCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011164          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (492)
Q Consensus       111 ~~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~  145 (492)
                      |.|||++|||+.+.++.||+|++++|+|+|+++..
T Consensus       109 ~~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~  143 (167)
T 1jvw_A          109 LFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKD  143 (167)
T ss_dssp             EEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGG
T ss_pred             EEECchhhCCCCCCCCCcCCCCeEEEEEEEEEEEc
Confidence            99999999999998888999999999999999975

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.87  E-value=8.6e-22  Score=180.51  Aligned_cols=110  Identities=53%  Similarity=0.887  Sum_probs=105.0

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEE
Q 011164           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (492)
Q Consensus        33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~  112 (492)
                      ..+++|++|+++++|+| ..|..||.|.+||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++||+++|.
T Consensus       100 ~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v~  178 (209)
T 3uf8_A          100 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT  178 (209)
T ss_dssp             EECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEEE
T ss_pred             cCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEEE
Confidence            56889999999999999 77999999999999999999999999887899999999999999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011164          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (492)
Q Consensus       113 i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~  143 (492)
                      |||++|||+.+.++.||++++|+|+|+|+++
T Consensus       179 Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          179 IPPQLGYGARGAAGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             ECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            9999999999988789999999999999874

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.87  E-value=1.7e-21  Score=162.84  Aligned_cols=112  Identities=29%  Similarity=0.403  Sum_probs=102.2

Q ss_pred             ceeeeeCCccEEEEEEecCCCC-CCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCc
Q 011164          262 TVSEITDDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK  340 (492)
Q Consensus       262 ~~~d~~~d~~v~k~il~~G~g~-~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~  340 (492)
                      .+.++++++++.++++++|+|. ..|..||.|++||++++.||++|+++      .|+.|.+|.+++++||+.+|.+|++
T Consensus         5 ~~~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~------~p~~f~lG~~~~i~g~e~~l~gm~~   78 (118)
T 2awg_A            5 EWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE------PELVFTLGDCDVIQALDLSVPLMDV   78 (118)
T ss_dssp             CEEESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE------EEEEEETTSSCSCHHHHHHGGGSCT
T ss_pred             cceEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC------CCEEEEECCCChhHHHHHHHhCCCC
Confidence            3567788888999999999993 38999999999999999999999863      6899999999999999999999999


Q ss_pred             CcEEEEEECCCCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       341 Ge~~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      ||+++|.|||++|||..+.+   +.|||+++|+|+|+|+++.
T Consensus        79 Ge~~~~~ip~~~ayG~~~~~---~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           79 GETAMVTADSKYCYGPQGRS---PYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             TCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             CCEEEEEEChHHccCCCCCC---CccCCCCeEEEEEEEEEec
Confidence            99999999999999988764   4699999999999999986

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.87  E-value=9.1e-22  Score=179.74  Aligned_cols=106  Identities=34%  Similarity=0.616  Sum_probs=101.1

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEE
Q 011164           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (492)
Q Consensus        33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~  112 (492)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++|   +.|+.|.+|  ++++||+++|.+|++|++++|+
T Consensus       113 ~~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss---~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~  186 (219)
T 3oe2_A          113 KELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRLV  186 (219)
T ss_dssp             EECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC---SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc---CCcEEEEec--chhHHHHHHHhCCCCCCEEEEE
Confidence            45899999999999999 78999999999999999999999999   589999998  8999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011164          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (492)
Q Consensus       113 i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~  144 (492)
                      |||++|||..+.++.||++++|+|+|+|++++
T Consensus       187 IPp~lAYG~~g~~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          187 IPSDQAYGAEGAGDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             ECchhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence            99999999999887899999999999999985

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.87  E-value=1.9e-21  Score=165.12  Aligned_cols=115  Identities=38%  Similarity=0.639  Sum_probs=102.3

Q ss_pred             eeeeCCccEEEEEEecC-CC-CCCCCCCCEEEEEEEEEE-cCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCc
Q 011164          264 SEITDDKKVIKKILKEG-DG-FERPNEGAVVKVKLIGKL-QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK  340 (492)
Q Consensus       264 ~d~~~d~~v~k~il~~G-~g-~~~p~~g~~V~v~y~~~~-~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~  340 (492)
                      .+++.++.++++++++| .| ...|..||.|+|||++++ .||++||+++  ....|+.|.+|.+++++||+.+|.+|++
T Consensus        10 ~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~--~~~~p~~f~lG~g~~i~g~e~~l~gm~~   87 (129)
T 2vn1_A           10 VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSF--DRNVPFKFHLEQGEVIKGWDICVSSMRK   87 (129)
T ss_dssp             EECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGG--GTTCCEEEETTSSSSCHHHHHHHTTCCT
T ss_pred             cEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecC--CCCccEEEEeCCCCcCHHHHHHHhCCCC
Confidence            34467788888999977 44 288999999999999999 7999999985  2468999999999999999999999999


Q ss_pred             CcEEEEEECCCCccCCCccccccccCCCCccEEEEEEEeeeee
Q 011164          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (492)
Q Consensus       341 Ge~~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~  383 (492)
                      ||+++|.|||++|||..+.+   +.|||+++|+|+|+|+++.+
T Consensus        88 Ge~~~v~ip~~~aYG~~~~~---~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           88 NEKCLVRIESMYGYGDEGCG---ESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             TCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             CCEEEEEEChHHcCCCCCCC---CCcCCCCeEEEEEEEEEEec
Confidence            99999999999999988764   46999999999999999975

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.87  E-value=1.4e-21  Score=172.17  Aligned_cols=121  Identities=27%  Similarity=0.443  Sum_probs=106.2

Q ss_pred             eCCccEEEEEEecCCCCCC-CCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEE
Q 011164          267 TDDKKVIKKILKEGDGFER-PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVAL  345 (492)
Q Consensus       267 ~~d~~v~k~il~~G~g~~~-p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~  345 (492)
                      +.++|+.++++++|+| .. |..||.|+|||++++.||++||+++  ..+.|+.|.+  +++++||+.+|.+|++||+++
T Consensus        34 ~~~sGl~~~vl~~G~G-~~~~~~gd~V~v~Y~g~l~dG~~fdss~--~~g~p~~f~l--g~vI~G~eeaL~gMk~Ge~~~  108 (167)
T 1jvw_A           34 KLPSGLVFQRIARGSG-KRAPAIDDKCEVHYTGRLRDGTVFDSSR--ERGKPTTFRP--NEVIKGWTEALQLMREGDRWR  108 (167)
T ss_dssp             ECTTSCEEEEEECCCC-SBCCCTTCCEEEEEEEECTTSCEEEEHH--HHTSCEEECG--GGSCHHHHHHHTTCCTTCEEE
T ss_pred             ECCCCEEEEEEEcCCC-CcCCCCCCEEEEEEEEEECCCCEEeecc--ccCCCEEEEe--CchhHHHHHHHcCCCCCCEEE
Confidence            4577899999999999 55 9999999999999999999999985  2457999999  489999999999999999999


Q ss_pred             EEECCCCccCCCccccccccCCCCccEEEEEEEeeeeecccCCCCChHHHHH
Q 011164          346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIE  397 (492)
Q Consensus       346 i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~~~~~e~l~  397 (492)
                      |.|||++|||..+.+   +.||||++|+|+|+|+++.+.  ++.++.+|.-+
T Consensus       109 ~~Ip~~laYG~~g~~---~~Ipp~s~LiF~VeL~~i~~~--~~~~~~~e~~~  155 (167)
T 1jvw_A          109 LFIPYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDG--GKGRTAEEVDE  155 (167)
T ss_dssp             EEECGGGTTTTTCSS---SSSCTTCCEEEEEEEEEEGGG--CCSCBHHHHHH
T ss_pred             EEECchhhCCCCCCC---CCcCCCCeEEEEEEEEEEEcC--CCCCCHHHHHH
Confidence            999999999998764   469999999999999999853  45677766443

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.87  E-value=1.7e-21  Score=165.83  Aligned_cols=110  Identities=34%  Similarity=0.541  Sum_probs=101.2

Q ss_pred             eeCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEE
Q 011164          266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVAL  345 (492)
Q Consensus       266 ~~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~  345 (492)
                      ...+.++.++++++|+| ..|..||.|+|||++++.||++||+++  ...+|+.|.+|.+++++||+.+|.+|++||+++
T Consensus        24 ~~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~  100 (133)
T 2y78_A           24 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSK--DRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRR  100 (133)
T ss_dssp             EECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETT--TTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEE
T ss_pred             EECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccC--cCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEE
Confidence            34578899999999999 899999999999999999999999986  246899999999999999999999999999999


Q ss_pred             EEECCCCccCCCccccccccCCCCccEEEEEEEeee
Q 011164          346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (492)
Q Consensus       346 i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~  381 (492)
                      |.|||++|||..+..   ..|||+++|+|+|+|++|
T Consensus       101 v~ip~~~aYG~~~~~---~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          101 LTIPPQLGYGARGAG---GVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             EEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEC
T ss_pred             EEECcHHhCCCCCCC---CCCCCCCeEEEEEEEEEC
Confidence            999999999988764   469999999999999875

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.87  E-value=4.3e-22  Score=169.04  Aligned_cols=111  Identities=41%  Similarity=0.706  Sum_probs=103.2

Q ss_pred             eeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhcc------CcC
Q 011164           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKT------MKK  105 (492)
Q Consensus        32 ~~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~------m~~  105 (492)
                      ...+++|++|+++++|+| ..++.||.|.|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+      |++
T Consensus         7 ~~~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~   85 (129)
T 1u79_A            7 FSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT   85 (129)
T ss_dssp             CEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred             cEECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCC
Confidence            356889999999999999 7899999999999999999999999986568999999999999999999998      999


Q ss_pred             ccEEEEEecCCcccCCCCCC-----CCCCCCCceEEEEEEEEE
Q 011164          106 GENAVFTIPPELAYGESGSP-----PTIPPNATLQFDVELLSW  143 (492)
Q Consensus       106 Ge~~~~~i~~~~ayg~~~~~-----~~i~~~~~l~~~vel~~~  143 (492)
                      |++++|.|||+++||+.+.+     ..||++++++|+|+|+++
T Consensus        86 Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           86 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             TCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            99999999999999998863     479999999999999886

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.87  E-value=3.2e-21  Score=167.92  Aligned_cols=110  Identities=34%  Similarity=0.559  Sum_probs=101.0

Q ss_pred             eecCCCe-EEEEEEcccCc-CCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEE
Q 011164           33 EIGNQGL-KKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (492)
Q Consensus        33 ~~~~~g~-~~~il~~G~G~-~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~  110 (492)
                      .++++|+ +|+++++|+|. ..|..||.|.|||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|++++
T Consensus        38 ~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~----~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~  113 (157)
T 2jwx_A           38 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETAM  113 (157)
T ss_dssp             ESSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEE----EEEEEETTTTSSCHHHHHHTTTSCTTCEEE
T ss_pred             eECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecC----CCEEEEeCCCChhHHHHHHHcCCCCCCEEE
Confidence            3567776 89999999992 38999999999999999999999984    799999999999999999999999999999


Q ss_pred             EEecCCcccCCCC-CCCCCCCCCceEEEEEEEEEeec
Q 011164          111 FTIPPELAYGESG-SPPTIPPNATLQFDVELLSWTSV  146 (492)
Q Consensus       111 ~~i~~~~ayg~~~-~~~~i~~~~~l~~~vel~~~~~~  146 (492)
                      |.||++++||..+ .++.||++++++|+|+|+++...
T Consensus       114 v~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~  150 (157)
T 2jwx_A          114 VTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDL  150 (157)
T ss_dssp             EEECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEEC
T ss_pred             EEECchhcCCcccccCCCcCCCCeEEEEEEEEEEEcc
Confidence            9999999999999 66789999999999999998764

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.87  E-value=1.4e-21  Score=178.66  Aligned_cols=110  Identities=36%  Similarity=0.634  Sum_probs=104.0

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEE
Q 011164           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (492)
Q Consensus        33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~  112 (492)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++|+.++.|+.|.+|  ++++||+++|.+|++|++++|+
T Consensus       102 ~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~  178 (213)
T 1fd9_A          102 VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIY  178 (213)
T ss_dssp             EECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEcC--chhhHHHHHHcCCCCCCEEEEE
Confidence            56899999999999999 88999999999999999999999999877789999995  8999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011164          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (492)
Q Consensus       113 i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~  145 (492)
                      |||+++||+.+.++.||++++++|+|+|+++..
T Consensus       179 IP~~laYG~~g~~~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          179 VPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             ECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             ECchhccCccCCCCCCCCCCeEEEEEEEEEEEc
Confidence            999999999998778999999999999999863

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.87  E-value=3.3e-21  Score=161.03  Aligned_cols=107  Identities=35%  Similarity=0.560  Sum_probs=98.7

Q ss_pred             ecCCC-eEEEEEEcccCc-CCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEE
Q 011164           34 IGNQG-LKKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF  111 (492)
Q Consensus        34 ~~~~g-~~~~il~~G~G~-~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~  111 (492)
                      ++++| ++|+++++|+|. ..|+.||.|.+||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|++++|
T Consensus         9 ~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~----~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~~   84 (118)
T 2awg_A            9 ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETAMV   84 (118)
T ss_dssp             SSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE----EEEEEETTSSCSCHHHHHHGGGSCTTCEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC----CCEEEEECCCChhHHHHHHHhCCCCCCEEEE
Confidence            34555 999999999993 27999999999999999999999984    7999999999999999999999999999999


Q ss_pred             EecCCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011164          112 TIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (492)
Q Consensus       112 ~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~  144 (492)
                      .|||++|||..+.++.||++++++|+|+|+++.
T Consensus        85 ~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           85 TADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            999999999999877899999999999999874

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.86  E-value=2.3e-21  Score=168.83  Aligned_cols=115  Identities=28%  Similarity=0.391  Sum_probs=102.9

Q ss_pred             eeeeeCCccEEEEEEecCCCC-CCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcC
Q 011164          263 VSEITDDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN  341 (492)
Q Consensus       263 ~~d~~~d~~v~k~il~~G~g~-~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~G  341 (492)
                      +.++++++.+.++++++|+|. ..|..||.|+|||++++.||++||++      .|+.|.+|.+++++||+.+|.+|++|
T Consensus        36 ~~~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~------~p~~f~lG~g~vi~G~eeaL~gMk~G  109 (157)
T 2jwx_A           36 WLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE------PELVFTLGDCDVIQALDLSVPLMDVG  109 (157)
T ss_dssp             CEESSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEE------EEEEEETTTTSSCHHHHHHTTTSCTT
T ss_pred             cceECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecC------CCEEEEeCCCChhHHHHHHHcCCCCC
Confidence            455677777899999999992 38999999999999999999999863      68999999999999999999999999


Q ss_pred             cEEEEEECCCCccCCCc-cccccccCCCCccEEEEEEEeeeeeccc
Q 011164          342 EVALLTIAPEYAFGSAE-SQQELAVVPPNSTVHYEVELVSFEKEKE  386 (492)
Q Consensus       342 e~~~i~ip~~~~yg~~~-~~~~~~~ip~~~~l~~~v~l~~~~~~~~  386 (492)
                      |+++|.|||++|||..+ ..   ..|||+++|+|+|+|+++.....
T Consensus       110 e~~~v~IP~~~aYG~~g~~~---~~IPp~stLiF~VeL~~i~~~~~  152 (157)
T 2jwx_A          110 ETAMVTADSKYCYGPQGSRS---PYIPPHAALCLEVTLKTAVDLEH  152 (157)
T ss_dssp             CEEEEEECGGGTTTTTCCSS---SCCCTTCCEEEEEEEEEEEECSC
T ss_pred             CEEEEEECchhcCCcccccC---CCcCCCCeEEEEEEEEEEEcccc
Confidence            99999999999999887 43   46999999999999999986543

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.3e-21  Score=167.20  Aligned_cols=121  Identities=27%  Similarity=0.360  Sum_probs=107.7

Q ss_pred             eeeeeCCccEEEEEEecCCCC-CCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcC
Q 011164          263 VSEITDDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN  341 (492)
Q Consensus       263 ~~d~~~d~~v~k~il~~G~g~-~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~G  341 (492)
                      +.++++++++.++++++|+|. ..|..||.|++||++++.||++|++      ..|+.|.+|.+++++||+.+|.+|++|
T Consensus        10 ~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds------~~p~~f~lG~g~~i~G~e~~L~gm~~G   83 (135)
T 2d9f_A           10 WLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE------EPELVFTLGDCDVIQALDLSVPLMDVG   83 (135)
T ss_dssp             CEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEE------EEEEEEETTSCCSCTTTTTTGGGSCTT
T ss_pred             CcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEec------CCCEEEEeCCCChhHHHHHHHhCCCCC
Confidence            467778888999999999993 3899999999999999999999985      368999999999999999999999999


Q ss_pred             cEEEEEECCCCccCCCc-cccccccCCCCccEEEEEEEeeeeecccCCCCCh
Q 011164          342 EVALLTIAPEYAFGSAE-SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNT  392 (492)
Q Consensus       342 e~~~i~ip~~~~yg~~~-~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~~~~  392 (492)
                      |+++|.|||++|||..+ ..   ..|||+++|+|+|+|+++.+..+...++.
T Consensus        84 e~~~v~ip~~~aYG~~~~~~---~~Ip~~~~l~f~vel~~v~~~~~~e~~s~  132 (135)
T 2d9f_A           84 ETAMVTADSKYCYGPQGSRS---PYIPPHAALCLEVTLKTAVDRPDLEMSGP  132 (135)
T ss_dssp             CEEEEEECHHHHTCTTCCSS---SCCCTTCCEEEEEEEEEEESSCSSSSCCC
T ss_pred             CEEEEEEChhHccCcCCcCC---CccCCCCeEEEEEEEEEeecCCchhhcCc
Confidence            99999999999999887 43   46999999999999999998766655543

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.85  E-value=3.8e-21  Score=163.02  Aligned_cols=108  Identities=33%  Similarity=0.564  Sum_probs=96.7

Q ss_pred             CccEEEE--EEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEE
Q 011164          269 DKKVIKK--ILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (492)
Q Consensus       269 d~~v~k~--il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i  346 (492)
                      +.++.++  ++++|+|...|..||.|++||++++.||++||+++.  ...|+.|.+|.+++++||+.+|.+|++||+++|
T Consensus        21 ~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~--~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v   98 (130)
T 2lgo_A           21 SMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRS--RGKPFQFTLGAGEVIKGWDQGVATMTLGEKALF   98 (130)
T ss_dssp             SSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTT--TTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEE
T ss_pred             CCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCc--CCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEE
Confidence            4566555  999999944499999999999999999999998852  457999999999999999999999999999999


Q ss_pred             EECCCCccCCCccccccccCCCCccEEEEEEEeee
Q 011164          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (492)
Q Consensus       347 ~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~  381 (492)
                      .|||++|||..+.+   +.|||+++|+|+|+|++|
T Consensus        99 ~ip~~~aYG~~~~~---~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           99 TIPYQLAYGERGYP---PVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             EECTTTSTTTTCCS---TTSCSSCCEEEEEEEEEC
T ss_pred             EECcHHHCCCCCCC---CCcCCCCeEEEEEEEEEC
Confidence            99999999988764   469999999999999875

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.85  E-value=9.1e-21  Score=173.67  Aligned_cols=123  Identities=31%  Similarity=0.470  Sum_probs=107.3

Q ss_pred             EEEEeecccceeeeeCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHH
Q 011164          253 IALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD  332 (492)
Q Consensus       253 ~~v~l~~~~~~~d~~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle  332 (492)
                      +++-+...--....+.+++++++++++|+| ..|..||.|++||++++.||++||+++  ....|+.|.+|.+++++||+
T Consensus        87 I~~~~eq~Gg~t~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~--~~~~P~~f~lG~g~vi~G~e  163 (209)
T 3uf8_A           87 IEAHREQIGGSTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSK--DRNDPFAFVLGGGMVIKGWD  163 (209)
T ss_dssp             EEEECSCTTCCCCEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESG--GGTCCEEEETTSSSSCHHHH
T ss_pred             chhhccccccccccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEcc--ccCCCEEEEeCCCccchhHH
Confidence            344443333334456788999999999999 779999999999999999999999986  35789999999999999999


Q ss_pred             HHHhccCcCcEEEEEECCCCccCCCccccccccCCCCccEEEEEEEeee
Q 011164          333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (492)
Q Consensus       333 ~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~  381 (492)
                      .+|.+|++||+++|.|||++|||+.+..   +.|||+++|+|+|+|++|
T Consensus       164 eaL~gM~~Ge~~~v~Ipp~~aYG~~g~~---~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          164 EGVQGMKVGGVRRLTIPPQLGYGARGAA---GVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             HHHTTCBTTCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEC
T ss_pred             HHHhCCCCCCEEEEEECcHHhCCCCCCC---CCcCCCCeEEEEEEEEEC
Confidence            9999999999999999999999998875   459999999999999975

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.85  E-value=5.2e-21  Score=174.74  Aligned_cols=106  Identities=25%  Similarity=0.475  Sum_probs=98.4

Q ss_pred             eCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEE
Q 011164          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (492)
Q Consensus       267 ~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i  346 (492)
                      +.++|+.++++++|+| ..|..||.|+|||++++.||++||++     ..|+.|.+|  ++++||+.+|.+|++|++++|
T Consensus       114 ~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss-----~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v  185 (219)
T 3oe2_A          114 ELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS-----TQPQWFRLD--SVISGWTSALQNMPTGAKWRL  185 (219)
T ss_dssp             ECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC-----SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEE
T ss_pred             ECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc-----CCcEEEEec--chhHHHHHHHhCCCCCCEEEE
Confidence            4578899999999999 89999999999999999999999987     578999998  899999999999999999999


Q ss_pred             EECCCCccCCCccccccccCCCCccEEEEEEEeeeee
Q 011164          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (492)
Q Consensus       347 ~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~  383 (492)
                      +|||++|||..+.+   +.|||+++|+|+|+|++|.+
T Consensus       186 ~IPp~lAYG~~g~~---~~IPpnstLvFeVeLl~Ik~  219 (219)
T 3oe2_A          186 VIPSDQAYGAEGAG---DLIDPFTPLVFEIELIAVSQ  219 (219)
T ss_dssp             EECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             EECchhcCCCCCCC---CCCCCCCeEEEEEEEEEEeC
Confidence            99999999998875   46999999999999999863

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.85  E-value=7.6e-21  Score=175.09  Aligned_cols=107  Identities=50%  Similarity=0.923  Sum_probs=101.2

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEE
Q 011164           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (492)
Q Consensus        33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~  112 (492)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++|+.++.|+.|.+|  ++++||+++|.+|++|++++|+
T Consensus       117 ~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~  193 (224)
T 1q6h_A          117 KTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  193 (224)
T ss_dssp             EECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEE
T ss_pred             EECCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEcC--CcchhHHHHHcCCCCCCEEEEE
Confidence            45789999999999999 78999999999999999999999999987789999995  8999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011164          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (492)
Q Consensus       113 i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~  143 (492)
                      |||+++||+.+.++ ||++++++|+|+|+++
T Consensus       194 IP~~laYG~~g~~~-IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          194 IPPELAYGKAGVPG-IPPNSTLVFDVELLDV  223 (224)
T ss_dssp             ECGGGTTTTTCBTT-BCTTCCEEEEEEEEEE
T ss_pred             ECchhhcCcCCCCC-CCCCCEEEEEEEEEEe
Confidence            99999999998875 9999999999999986

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=6.8e-21  Score=162.76  Aligned_cols=112  Identities=34%  Similarity=0.550  Sum_probs=101.3

Q ss_pred             eecCCC-eEEEEEEcccCc-CCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEE
Q 011164           33 EIGNQG-LKKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (492)
Q Consensus        33 ~~~~~g-~~~~il~~G~G~-~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~  110 (492)
                      .++++| ++|+++++|+|. ..++.||.|.+||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|++++
T Consensus        12 ~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~----~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~~   87 (135)
T 2d9f_A           12 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETAM   87 (135)
T ss_dssp             ESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEE----EEEEEETTSCCSCTTTTTTGGGSCTTCEEE
T ss_pred             EECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecC----CCEEEEeCCCChhHHHHHHHhCCCCCCEEE
Confidence            334555 999999999993 38999999999999999999999983    799999999999999999999999999999


Q ss_pred             EEecCCcccCCCC-CCCCCCCCCceEEEEEEEEEeeccc
Q 011164          111 FTIPPELAYGESG-SPPTIPPNATLQFDVELLSWTSVKD  148 (492)
Q Consensus       111 ~~i~~~~ayg~~~-~~~~i~~~~~l~~~vel~~~~~~~~  148 (492)
                      |.|||+++||+.+ .++.||++++++|+|+|+++....+
T Consensus        88 v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~  126 (135)
T 2d9f_A           88 VTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPD  126 (135)
T ss_dssp             EEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCS
T ss_pred             EEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCc
Confidence            9999999999998 6678999999999999999976544

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.84  E-value=1.2e-20  Score=160.18  Aligned_cols=112  Identities=23%  Similarity=0.412  Sum_probs=99.9

Q ss_pred             eCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhc------cCc
Q 011164          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVIT------MKK  340 (492)
Q Consensus       267 ~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~------m~~  340 (492)
                      ..+.+++++++++|+| ..|..||.|+|||++++.||++||+++  ...+|+.|.+|.+++++||+.+|.+      |++
T Consensus         9 ~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~   85 (129)
T 1u79_A            9 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSY--NRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT   85 (129)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHH--HHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred             ECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecC--CCCCCEEEEeCCCCccHHHHHHhcccccccccCC
Confidence            3467899999999999 889999999999999999999999885  2357999999999999999999998      999


Q ss_pred             CcEEEEEECCCCccCCCcccc--ccccCCCCccEEEEEEEeee
Q 011164          341 NEVALLTIAPEYAFGSAESQQ--ELAVVPPNSTVHYEVELVSF  381 (492)
Q Consensus       341 Ge~~~i~ip~~~~yg~~~~~~--~~~~ip~~~~l~~~v~l~~~  381 (492)
                      ||+++|.|||++|||+.+...  ....|||+++|+|+|+|+++
T Consensus        86 Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           86 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             TCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            999999999999999887531  11469999999999999986

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.84  E-value=2.2e-20  Score=170.84  Aligned_cols=110  Identities=25%  Similarity=0.435  Sum_probs=100.2

Q ss_pred             eeCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEE
Q 011164          266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVAL  345 (492)
Q Consensus       266 ~~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~  345 (492)
                      .+.++++.++++++|+| ..|..||.|+|||++++.||++||+++.  .+.|+.|.+  +++++||+.+|.+|++|++++
T Consensus       102 ~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~--~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~  176 (213)
T 1fd9_A          102 VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEK--TGKPATFQV--SQVIPGWTEALQLMPAGSTWE  176 (213)
T ss_dssp             EECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHH--HCSCEEEEG--GGSCHHHHHHHTTCCTTCEEE
T ss_pred             EECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccc--cCCCEEEEc--CchhhHHHHHHcCCCCCCEEE
Confidence            34578899999999999 8999999999999999999999999862  457999999  489999999999999999999


Q ss_pred             EEECCCCccCCCccccccccCCCCccEEEEEEEeeeee
Q 011164          346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (492)
Q Consensus       346 i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~  383 (492)
                      |.|||++|||..+.+   +.|||+++|+|+|+|+++.+
T Consensus       177 v~IP~~laYG~~g~~---~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          177 IYVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             EEECGGGTTTTCCCS---SSCCTTCCEEEEEEEEEEEC
T ss_pred             EEECchhccCccCCC---CCCCCCCeEEEEEEEEEEEc
Confidence            999999999998764   46999999999999999975

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.83  E-value=4.8e-20  Score=149.91  Aligned_cols=95  Identities=53%  Similarity=0.915  Sum_probs=90.3

Q ss_pred             CCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCC
Q 011164           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (492)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~  130 (492)
                      ..++.||.|.+||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|.||+++|||+.+.++.||+
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~   83 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPG   83 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCT
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCc
Confidence            67899999999999999899999999877789999999999999999999999999999999999999999988778999


Q ss_pred             CCceEEEEEEEEEee
Q 011164          131 NATLQFDVELLSWTS  145 (492)
Q Consensus       131 ~~~l~~~vel~~~~~  145 (492)
                      +++++|+|+|+++..
T Consensus        84 ~~~l~f~v~l~~v~~   98 (102)
T 2pbc_A           84 GATLVFEVELLKIER   98 (102)
T ss_dssp             TCCEEEEEEEEEEGG
T ss_pred             CCeEEEEEEEEEecc
Confidence            999999999999865

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.82  E-value=1.3e-19  Score=166.78  Aligned_cols=106  Identities=30%  Similarity=0.535  Sum_probs=97.3

Q ss_pred             CCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEE
Q 011164          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (492)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~  347 (492)
                      .++++.++++++|+| ..|..||.|+|||++++.||++||+++.  .+.|+.|.+  +++++||+.+|.+|++|++++|.
T Consensus       119 ~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~--~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~  193 (224)
T 1q6h_A          119 SSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYT--RGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLV  193 (224)
T ss_dssp             CTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGG--GTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEE
T ss_pred             CCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccc--cCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEE
Confidence            477899999999999 8999999999999999999999999863  457999999  48999999999999999999999


Q ss_pred             ECCCCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       348 ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      |||+++||..+.+    .|||+++|+|+|+|++|.
T Consensus       194 IP~~laYG~~g~~----~IPp~stLiF~VeL~~ik  224 (224)
T 1q6h_A          194 IPPELAYGKAGVP----GIPPNSTLVFDVELLDVK  224 (224)
T ss_dssp             ECGGGTTTTTCBT----TBCTTCCEEEEEEEEEEC
T ss_pred             ECchhhcCcCCCC----CCCCCCEEEEEEEEEEeC
Confidence            9999999988764    399999999999999873

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.81  E-value=1.4e-19  Score=147.13  Aligned_cols=96  Identities=31%  Similarity=0.520  Sum_probs=88.4

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCcccccc
Q 011164          284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQEL  363 (492)
Q Consensus       284 ~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~  363 (492)
                      ..|..||.|++||++++.||++|++++  ....|+.|.+|.+++++||+.+|.+|++||+++|.+||++|||..+..   
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~--~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~---   78 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSL--PQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAP---   78 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEEST--TTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBT---
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCC--CCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCC---
Confidence            679999999999999999999999986  246899999999999999999999999999999999999999988764   


Q ss_pred             ccCCCCccEEEEEEEeeeeec
Q 011164          364 AVVPPNSTVHYEVELVSFEKE  384 (492)
Q Consensus       364 ~~ip~~~~l~~~v~l~~~~~~  384 (492)
                      ..|||+++|+|+|+|+++.+.
T Consensus        79 ~~Ip~~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           79 PKIPGGATLVFEVELLKIERR   99 (102)
T ss_dssp             TTBCTTCCEEEEEEEEEEGGG
T ss_pred             CCcCcCCeEEEEEEEEEeccc
Confidence            469999999999999999864

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.81  E-value=3.3e-19  Score=171.07  Aligned_cols=117  Identities=42%  Similarity=0.603  Sum_probs=106.4

Q ss_pred             eeeee--CCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCc
Q 011164          263 VSEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK  340 (492)
Q Consensus       263 ~~d~~--~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~  340 (492)
                      ..|++  .++++.++++++|.|...|..||.|+|||++++.||++||+++  ....|+.|.+|.+++++||+.+|.+|++
T Consensus        42 ~~di~~~~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~g~vi~G~e~aL~gm~~  119 (280)
T 1q1c_A           42 GVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSL--DRKDKFSFDLGKGEVIKAWDIAIATMKV  119 (280)
T ss_dssp             CEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEST--TSSSCEEEETTTTSSCHHHHHHHTTCCT
T ss_pred             ccccccCCCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecc--cCCCCEEEEECCcChhHHHHHHHhcCCC
Confidence            34666  6899999999999996569999999999999999999999985  3468999999999999999999999999


Q ss_pred             CcEEEEEECCCCccCCCccccccccCCCCccEEEEEEEeeeeec
Q 011164          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE  384 (492)
Q Consensus       341 Ge~~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~~  384 (492)
                      ||+++|.|||++|||..+.+   +.||++++|+|+|+|+++...
T Consensus       120 Ge~~~v~ipp~~aYG~~g~~---~~Ip~~~~lvf~Vel~~i~~~  160 (280)
T 1q1c_A          120 GEVCHITCKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKGE  160 (280)
T ss_dssp             TCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEECE
T ss_pred             CCEEEEEECcHHhCCCcCcc---CCCCCCCcEEEEEEeeeeccc
Confidence            99999999999999998864   579999999999999999853

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.79  E-value=1.1e-19  Score=159.33  Aligned_cols=133  Identities=22%  Similarity=0.336  Sum_probs=98.8

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCC
Q 011164           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (492)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~  131 (492)
                      .+++||.|.+||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|.|||++|||+++        
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~--------   95 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS--------   95 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC--------
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence            588999999999999999999999987668999999999999999999999999999999999999999876        


Q ss_pred             CceEEEEEEEEEeecccccccccceeeeeecCc---ccCCCCCcceEEEEEEEEcCCCcEEeeec
Q 011164          132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKAD  193 (492)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~---g~~~~~~~d~V~v~y~~~l~~g~~~~~~~  193 (492)
                      ..++..+..-.+.....+ ..+..+.--...|.   +..+...++.|++|+||||||.++.|+-+
T Consensus        96 ~~lv~~vp~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~ve  159 (169)
T 4dt4_A           96 PDLIQYFSRREFMDAGEP-EIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIE  159 (169)
T ss_dssp             GGGEEEEEGGGGTTTCCC-CTTCEEEEECTTSCEEEEEEEEEETTEEEEECSCTTTTCCEEEEEE
T ss_pred             hHHEEEeCHHHCCCcCCC-CCCcEEEEECCCCCEEEEEEEEEcCCEEEEeCCCccCCCEEEEEEE
Confidence            334544443333210001 11111110011121   22333456899999999999999998764

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.78  E-value=6.9e-19  Score=152.67  Aligned_cols=134  Identities=17%  Similarity=0.241  Sum_probs=100.0

Q ss_pred             CCCCCCCEEEEEEEEEec-CCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCC
Q 011164           51 DTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIP  129 (492)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~-dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~  129 (492)
                      ..++.||.|++||++++. ||++|++|+.. .|+.|.+|.+++++||+++|.+|++|++++|.|||++|||+++      
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~-~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~------   77 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISK-EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE------   77 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTT-CCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC------
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCC-cCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC------
Confidence            467899999999999998 99999999864 8999999999999999999999999999999999999999876      


Q ss_pred             CCCceEEEEEEEEEeecccccccccceeeeeecC---cccCCCCCcceEEEEEEEEcCCCcEEeeecCe
Q 011164          130 PNATLQFDVELLSWTSVKDICKDGGIIKKILKEG---EKWENPKDLDEVLVNYEARLEDGMVVGKADGV  195 (492)
Q Consensus       130 ~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g---~g~~~~~~~d~V~v~y~~~l~~g~~~~~~~~~  195 (492)
                        ..+++.+....+ ....+ ..+..+..-...|   .+..+...++.|++||||||||.++.|+-+-+
T Consensus        78 --~~~v~~v~~~~f-~~~~~-~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v~v~  142 (151)
T 2kr7_A           78 --SSYLQEVPRDQF-EGIEL-EKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTLAFRFKVL  142 (151)
T ss_dssp             --SCEEEEEEGGGG-TTSCC-CTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTSCCCEEEEEEEE
T ss_pred             --cceEEEEcHHHc-CCCCC-ccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCCCCEEEEEEEEE
Confidence              345555554444 10011 1111111111112   12234446689999999999999999876433

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.78  E-value=1.4e-19  Score=166.36  Aligned_cols=168  Identities=24%  Similarity=0.324  Sum_probs=117.4

Q ss_pred             CCCCCEEEEEEEEEecCCCEEeecCCC-------------CCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCccc
Q 011164           53 PENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY  119 (492)
Q Consensus        53 ~~~gd~V~v~Y~~~~~dg~~~~ss~~~-------------~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ay  119 (492)
                      ++.||.|.+||++++ ||++|++|+.+             +.|+.|.+|.+++++||+++|.+|++|++++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            678999999999999 99999999752             3799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCceEEEEEEEEEeecccccc-cccceeeeeecCcccCCCCCcceEEEEEEEEcCCCcEEeeecCeeeE
Q 011164          120 GESGSPPTIPPNATLQFDVELLSWTSVKDICK-DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFT  198 (492)
Q Consensus       120 g~~~~~~~i~~~~~l~~~vel~~~~~~~~~~~-d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~l~~g~~~~~~~~~~~~  198 (492)
                      |.++.        .++..+..-.+.. .+... .+..+. . ....+..+...++.|++|+||||||.++.|+-+-....
T Consensus        81 Ge~~~--------~lv~~vp~~~f~~-~~~~~~vG~~~~-~-~~~~g~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v~  149 (231)
T 3prb_A           81 GKRDP--------SKIKLIPLSEFTK-RGIKPIKGLTIT-I-DGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIEEVV  149 (231)
T ss_dssp             CCCCG--------GGEEEEETHHHHT-TTCCCCTTCEEE-E-TTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEEC
T ss_pred             CCCCh--------HHEEecCHHHCCc-ccCCCCCCcEEE-e-cCCCEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEe
Confidence            99873        3444433222211 01110 111111 0 11123344445689999999999999999987555444


Q ss_pred             eCCCCccchHHHHHhc----cc---cCcEEEEEecCCCccC
Q 011164          199 VKDGHFCPTLAKAVKT----MK---KGEKVLLAVKPQYGFG  232 (492)
Q Consensus       199 ~g~~~~~~~l~~~l~~----m~---~ge~~~i~vp~~~~~g  232 (492)
                      -...+.+.++-.-..+    |+   .++.+.|.+|+++.|.
T Consensus       150 eat~eei~~~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~  190 (231)
T 3prb_A          150 DDKKNIVKEIVKMYVPRLSDVKVTIRNGTVKIELPEFAPFI  190 (231)
T ss_dssp             CSHHHHHHHHHHHHCTTCCCCEEEEETTEEEEECCTTGGGS
T ss_pred             cCCHHHHHHHHHHhcCCccceEEEEeCCeEEEEcCHHHhhh
Confidence            3333444444433332    23   3678999999986553

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.77  E-value=1.7e-19  Score=156.64  Aligned_cols=132  Identities=27%  Similarity=0.377  Sum_probs=98.1

Q ss_pred             CCCCCEEEEEEEEEecCCCEEeecCCC-------------CCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCccc
Q 011164           53 PENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY  119 (492)
Q Consensus        53 ~~~gd~V~v~Y~~~~~dg~~~~ss~~~-------------~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ay  119 (492)
                      +++||.|.+||++++ ||++|++|+.+             +.|+.|.+|.+++++||+++|.+|++|++++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            678999999999999 99999999752             3799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCceEEEEEEEEEeecccccc-cccceeeeeecCcccCCCCCcceEEEEEEEEcCCCcEEeeecCee
Q 011164          120 GESGSPPTIPPNATLQFDVELLSWTSVKDICK-DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVE  196 (492)
Q Consensus       120 g~~~~~~~i~~~~~l~~~vel~~~~~~~~~~~-d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~l~~g~~~~~~~~~~  196 (492)
                      |+++.        .++..+..-.+... +... .+..+. . ....+..+...++.|++|+||||||.++.|+-+-..
T Consensus        81 G~~~~--------~~V~~v~~~~f~~~-~~~~~~G~~~~-~-~~~~~~V~~v~~~~V~vD~NHPLAG~~L~F~v~v~~  147 (157)
T 3pr9_A           81 GKRDP--------SKIKLIPLSEFTKR-GIKPIKGLTIT-I-DGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIEE  147 (157)
T ss_dssp             CCCCG--------GGEEEEEHHHHHHT-TCCCCTTCEEE-E-TTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEE
T ss_pred             CCCCh--------HhEEEcCHHHCCcc-cCCcCCCcEEE-e-cCCCeEEEEEcCCEEEEECCCccCCCeEEEEEEEEE
Confidence            98773        34444443323210 1111 111111 0 111233444566899999999999999998865443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.77  E-value=3.8e-18  Score=169.42  Aligned_cols=111  Identities=30%  Similarity=0.621  Sum_probs=97.8

Q ss_pred             cceeeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCc---ccHhHHHHhccCcC
Q 011164           29 GEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGN---VIKGWDIGIKTMKK  105 (492)
Q Consensus        29 ~~~~~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~---~~~gle~~l~~m~~  105 (492)
                      .......++|+.|+|+++|+|...|..|+.|.|||++++ +|++||++     |+.|.+|.|.   ++++|+.||.+|++
T Consensus        17 ~~~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-----~~~f~lG~g~~~~~~~~~e~al~~~~~   90 (336)
T 1p5q_A           17 RGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-----ELRFEIGEGENLDLPYGLERAIQRMEK   90 (336)
T ss_dssp             -----CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCT
T ss_pred             cceeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-----CeEEEeCCCCccccchHHHHHHhcCCC
Confidence            444456889999999999999668999999999999998 99999986     8999999886   58999999999999


Q ss_pred             ccEEEEEecCCcccCCCCCCC-CCCCCCceEEEEEEEEEee
Q 011164          106 GENAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSWTS  145 (492)
Q Consensus       106 Ge~~~~~i~~~~ayg~~~~~~-~i~~~~~l~~~vel~~~~~  145 (492)
                      ||++.|.|+|.++||..+... .+|+++.+.|++.|.++..
T Consensus        91 Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~  131 (336)
T 1p5q_A           91 GEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK  131 (336)
T ss_dssp             TCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEEC
T ss_pred             CCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeeccc
Confidence            999999999999999998764 5899999999999988864

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.76  E-value=1.1e-19  Score=157.79  Aligned_cols=132  Identities=23%  Similarity=0.383  Sum_probs=96.8

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeecCC-------------CCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcc
Q 011164           52 TPENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA  118 (492)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~ss~~-------------~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~a  118 (492)
                      +++.||.|.+||++++.||++|++|+.             ...|+.|.+|.+++++||+++|.+|++|++++|.|||++|
T Consensus         1 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~a   80 (151)
T 1ix5_A            1 MVDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKA   80 (151)
T ss_dssp             CCCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTS
T ss_pred             CCCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHH
Confidence            367999999999999989999999963             2379999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCceEEEEEEEEEeecccccccccceeeeeecCcccCCCCCcceEEEEEEEEcCCCcEEeeec
Q 011164          119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD  193 (492)
Q Consensus       119 yg~~~~~~~i~~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~l~~g~~~~~~~  193 (492)
                      ||+++.        .+++.+.+..+.........+..+. . ..-.+..+...++.|++||||+|||.++.|+-+
T Consensus        81 YG~~~~--------~~v~~v~~~~f~~~~~~~~~G~~~~-~-~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~ve  145 (151)
T 1ix5_A           81 YGNRNE--------MLIQKIPRDAFKEADFEPEEGMVIL-A-EGIPATITEVTDNEVTLDFNHELAGKDLVFTIK  145 (151)
T ss_dssp             SCSCCS--------TTBCCEETHHHHTSTTCCCTTEEEE-S-SSCEEEEEEEETTEEEEECCCSSTTCCEEEECC
T ss_pred             CCCCCc--------cEEEEEEHHHcCccCCcccccCEEE-E-CCeEEEEEEEcCCEEEEeCCCCCCCCeEEEEEE
Confidence            998763        3455555444421000001111110 0 001222333456899999999999999998754

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.76  E-value=1.3e-18  Score=156.53  Aligned_cols=132  Identities=18%  Similarity=0.199  Sum_probs=98.3

Q ss_pred             CCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCCC
Q 011164           53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA  132 (492)
Q Consensus        53 ~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~~  132 (492)
                      +++||.|+|+|++++.||++|++|+.+ .|+.|.+|.++++++|+++|.+|++|++++|.|||++|||+++.        
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~--------   73 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE--------   73 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCTT-SCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCT--------
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCCC-CCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCCh--------
Confidence            679999999999998899999999864 89999999999999999999999999999999999999998763        


Q ss_pred             ceEEEEEEEEEeecccccccccceeeeeecC--cccCCCCCcceEEEEEEEEcCCCcEEeeecC
Q 011164          133 TLQFDVELLSWTSVKDICKDGGIIKKILKEG--EKWENPKDLDEVLVNYEARLEDGMVVGKADG  194 (492)
Q Consensus       133 ~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g--~g~~~~~~~d~V~v~y~~~l~~g~~~~~~~~  194 (492)
                      .+++.|....|.....+. .+..+..-...|  .+.++...++.|+||||||||+.++.|+-+-
T Consensus        74 ~lV~~vp~~~f~~~~~~~-~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev  136 (196)
T 2kfw_A           74 NLVQRVPKDVFMGVDELQ-VGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEV  136 (196)
T ss_dssp             TTCEEECGGGCCCSSCCC-TTCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCCEEEEEE
T ss_pred             hhEEEEEHHHCCCccCcc-cCCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEEEE
Confidence            344444433332110111 111111100111  2234556678999999999999999987643

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.73  E-value=7.9e-18  Score=148.48  Aligned_cols=134  Identities=19%  Similarity=0.204  Sum_probs=96.8

Q ss_pred             CCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCCC
Q 011164           53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA  132 (492)
Q Consensus        53 ~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~~  132 (492)
                      ++.||.|+++|++++.||++|++|+.+ .|+.|.+|.+++++||+++|.+|++|++++|.|||++|||+++.        
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~--------   73 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE--------   73 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSS-SCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCCT--------
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCC-cCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCCh--------
Confidence            678999999999998899999999864 79999999999999999999999999999999999999998763        


Q ss_pred             ceEEEEEEEEEeecccccccccceeeeeecC--cccCCCCCcceEEEEEEEEcCCCcEEeeecCee
Q 011164          133 TLQFDVELLSWTSVKDICKDGGIIKKILKEG--EKWENPKDLDEVLVNYEARLEDGMVVGKADGVE  196 (492)
Q Consensus       133 ~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g--~g~~~~~~~d~V~v~y~~~l~~g~~~~~~~~~~  196 (492)
                      .+++.+....+.....+. .+..+..-...|  .+..+...++.|++||||+||+.++.|+-+-..
T Consensus        74 ~~v~~v~~~~f~~~~~~~-~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~  138 (171)
T 2k8i_A           74 NLVQRVPKDVFMGVDELQ-VGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVA  138 (171)
T ss_dssp             TSEEEEEGGGGTTSSCCC-TTCEEEEEETTEEEEEEEEEECSSEEEEESCCSSCCCEEEEEEEEEE
T ss_pred             hhEEEeeHHHCCcccCcc-CCcEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEEEEEE
Confidence            344444333221100000 111111000011  111233345899999999999999999865443

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.68  E-value=3.1e-17  Score=142.89  Aligned_cols=129  Identities=20%  Similarity=0.256  Sum_probs=96.0

Q ss_pred             CCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCCC
Q 011164           53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA  132 (492)
Q Consensus        53 ~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~~  132 (492)
                      ++.||.|++||+++ .||++|++|+     +.|.+|.+++++||+++|.+|++|++++|.|||++|||+++        .
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~--------~   68 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE-----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHD--------P   68 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE-----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCC--------G
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE-----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCC--------c
Confidence            67899999999999 8999999986     89999999999999999999999999999999999999876        4


Q ss_pred             ceEEEEEEEEEeecccccccccceeeeeecC---cccCCCCCcceEEEEEEEEcCCCcEEeeecCee
Q 011164          133 TLQFDVELLSWTSVKDICKDGGIIKKILKEG---EKWENPKDLDEVLVNYEARLEDGMVVGKADGVE  196 (492)
Q Consensus       133 ~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g---~g~~~~~~~d~V~v~y~~~l~~g~~~~~~~~~~  196 (492)
                      .+++.+.+..+.....+ ..+..+..-...|   .+..+-..++.|++|+||+||+.++.|+-+-+.
T Consensus        69 ~lv~~v~~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAGk~L~F~vev~~  134 (158)
T 3cgm_A           69 EGVQVVPLSAFPEDAEV-VPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVK  134 (158)
T ss_dssp             GGEEEEEGGGSCTTSCC-CTTCEEEEEETTTEEEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEE
T ss_pred             ceEEEEEHHHCCCCCCC-ccCCEEEEECCCCCEEEEEEEEECCCEEEEeCCccccCCEEEEEEEEEE
Confidence            56666665544311111 1111111101111   122334456899999999999999999865443

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.62  E-value=1.3e-15  Score=133.43  Aligned_cols=72  Identities=21%  Similarity=0.378  Sum_probs=66.9

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCc
Q 011164          285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE  358 (492)
Q Consensus       285 ~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~  358 (492)
                      .+..|+.|++||++++.||++||+++  ..+.|+.|.+|.+++++||+++|.+|++||++.|.|||++|||+.+
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~--~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~   95 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTR--NNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS   95 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHH--HHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecC--CCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            68899999999999999999999985  2358999999999999999999999999999999999999999864

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.60  E-value=3.7e-15  Score=129.36  Aligned_cols=73  Identities=29%  Similarity=0.439  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEEcCCC-----------CCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCcc
Q 011164          286 PNEGAVVKVKLIGKLQDGTVFVKKGHS-----------EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAF  354 (492)
Q Consensus       286 p~~g~~V~v~y~~~~~~g~~~d~~~~~-----------~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~y  354 (492)
                      .+.||.|++||++++ ||++||+++..           ....|+.|.+|.+++++||+++|.+|++||+++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            568999999999999 99999998531           113799999999999999999999999999999999999999


Q ss_pred             CCCcc
Q 011164          355 GSAES  359 (492)
Q Consensus       355 g~~~~  359 (492)
                      |..+.
T Consensus        81 G~~~~   85 (157)
T 3pr9_A           81 GKRDP   85 (157)
T ss_dssp             CCCCG
T ss_pred             CCCCh
Confidence            98754

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.57  E-value=1.4e-14  Score=125.41  Aligned_cols=72  Identities=25%  Similarity=0.323  Sum_probs=66.9

Q ss_pred             CCCCCCCEEEEEEEEEEc-CCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCc
Q 011164          284 ERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE  358 (492)
Q Consensus       284 ~~p~~g~~V~v~y~~~~~-~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~  358 (492)
                      ..+..|+.|++||++++. +|++||+++   ...|+.|.+|.+++++||+.+|.+|++|+++.|.|||+.|||..+
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~---~~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~   77 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNI---SKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE   77 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEEST---TTCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCC---CCcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC
Confidence            567899999999999998 999999985   357999999999999999999999999999999999999999864

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.57  E-value=2.7e-15  Score=123.31  Aligned_cols=85  Identities=22%  Similarity=0.438  Sum_probs=74.9

Q ss_pred             CCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCC
Q 011164           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (492)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~  130 (492)
                      ..++.||.|.++|++++ ||++|+++.  +.|+.|.+|.+++++||+++|.+|++|++++|.|++...||..+.     +
T Consensus        28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~--~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~Yg~~~~-----~   99 (113)
T 1hxv_A           28 KKLANGDIAIIDFTGIV-DNKKLASAS--AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL-----Q   99 (113)
T ss_dssp             -CCCSSEEEEEEEEEEE-TTEECSTTC--CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG-----G
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEcccCC--ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchhhCcCCC-----C
Confidence            57899999999999998 999999996  489999999999999999999999999999999973333997653     5


Q ss_pred             CCceEEEEEEEEE
Q 011164          131 NATLQFDVELLSW  143 (492)
Q Consensus       131 ~~~l~~~vel~~~  143 (492)
                      +++++|+|+|+++
T Consensus       100 g~~l~F~V~l~~V  112 (113)
T 1hxv_A          100 SKPVTFEVVLKAI  112 (113)
T ss_dssp             SCCCEEEEEECCB
T ss_pred             CCEEEEEEEEEEE
Confidence            7999999999765

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.57  E-value=5.4e-15  Score=121.55  Aligned_cols=85  Identities=21%  Similarity=0.411  Sum_probs=74.2

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEEC-CCCccCCCccccc
Q 011164          284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIA-PEYAFGSAESQQE  362 (492)
Q Consensus       284 ~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip-~~~~yg~~~~~~~  362 (492)
                      ..+..||.|++||++++ ||++||++    ...|+.|.+|.+++++||+.+|.+|++||++.|.|| |.. ||..+    
T Consensus        28 ~~~~~gD~V~v~Y~g~~-dG~~fdss----~~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~----   97 (113)
T 1hxv_A           28 KKLANGDIAIIDFTGIV-DNKKLASA----SAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKE----   97 (113)
T ss_dssp             -CCCSSEEEEEEEEEEE-TTEECSTT----CCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSG----
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEcccC----CccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCC----
Confidence            57899999999999999 99999876    367999999999999999999999999999999996 443 88654    


Q ss_pred             cccCCCCccEEEEEEEeeee
Q 011164          363 LAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       363 ~~~ip~~~~l~~~v~l~~~~  382 (492)
                          .++++++|+|+|+++.
T Consensus        98 ----~~g~~l~F~V~l~~Vk  113 (113)
T 1hxv_A           98 ----LQSKPVTFEVVLKAIK  113 (113)
T ss_dssp             ----GGSCCCEEEEEECCBC
T ss_pred             ----CCCCEEEEEEEEEEEC
Confidence                2478999999999873

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.53  E-value=5e-14  Score=124.16  Aligned_cols=70  Identities=14%  Similarity=0.238  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCc
Q 011164          286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE  358 (492)
Q Consensus       286 p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~  358 (492)
                      +..|+.|+++|++++.+|++|++++   ...|+.|.+|.+++++||+.+|.+|++||++.|.|||+.|||..+
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~---~~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~   72 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESP---VSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECC---SSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred             CCCCCEEEEEEEEEECCCCEEeecc---CCcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence            6789999999999998999999985   347999999999999999999999999999999999999999874

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.53  E-value=3e-14  Score=130.95  Aligned_cols=98  Identities=23%  Similarity=0.394  Sum_probs=81.2

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEEcCCC-----------CCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCcc
Q 011164          286 PNEGAVVKVKLIGKLQDGTVFVKKGHS-----------EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAF  354 (492)
Q Consensus       286 p~~g~~V~v~y~~~~~~g~~~d~~~~~-----------~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~y  354 (492)
                      ...||.|++||++++ ||++||+++..           ....|+.|.+|.+++++||+.+|.+|++|+++.|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            468999999999999 99999998531           113799999999999999999999999999999999999999


Q ss_pred             CCCcccc-----------------------------------------ccccCCCCccEEEEEEEeeeeec
Q 011164          355 GSAESQQ-----------------------------------------ELAVVPPNSTVHYEVELVSFEKE  384 (492)
Q Consensus       355 g~~~~~~-----------------------------------------~~~~ip~~~~l~~~v~l~~~~~~  384 (492)
                      |..+...                                         +..+-=+|.+|.|+|+|+++.+.
T Consensus        81 Ge~~~~lv~~vp~~~f~~~~~~~~vG~~~~~~~~~g~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v~ea  151 (231)
T 3prb_A           81 GKRDPSKIKLIPLSEFTKRGIKPIKGLTITIDGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIEEVVDD  151 (231)
T ss_dssp             CCCCGGGEEEEETHHHHTTTCCCCTTCEEEETTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEECCS
T ss_pred             CCCChHHEEecCHHHCCcccCCCCCCcEEEecCCCEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEecC
Confidence            9865321                                         00111278999999999999854

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.53  E-value=3.9e-14  Score=127.30  Aligned_cols=70  Identities=14%  Similarity=0.238  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCc
Q 011164          286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE  358 (492)
Q Consensus       286 p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~  358 (492)
                      ++.++.|+|||++++.+|++||+++   ...|+.|.+|.+++++||+++|.+|++|++++|.|||+.|||+.+
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~---~~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~   72 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESP---VSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECC---TTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecC---CCCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC
Confidence            6789999999999998999999985   347999999999999999999999999999999999999999764

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.52  E-value=7.4e-15  Score=127.26  Aligned_cols=74  Identities=32%  Similarity=0.533  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEEcCCC-----------CCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCcc
Q 011164          286 PNEGAVVKVKLIGKLQDGTVFVKKGHS-----------EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAF  354 (492)
Q Consensus       286 p~~g~~V~v~y~~~~~~g~~~d~~~~~-----------~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~y  354 (492)
                      +..||.|++||++++.+|++||+++..           ....|+.|.+|.+++++||+.+|.+|++||++.|.|||++||
T Consensus         2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY   81 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence            678999999999999999999998520           124699999999999999999999999999999999999999


Q ss_pred             CCCcc
Q 011164          355 GSAES  359 (492)
Q Consensus       355 g~~~~  359 (492)
                      |..+.
T Consensus        82 G~~~~   86 (151)
T 1ix5_A           82 GNRNE   86 (151)
T ss_dssp             CSCCS
T ss_pred             CCCCc
Confidence            98654

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.44  E-value=3.5e-13  Score=117.21  Aligned_cols=65  Identities=18%  Similarity=0.338  Sum_probs=60.9

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCc
Q 011164          286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE  358 (492)
Q Consensus       286 p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~  358 (492)
                      +..|+.|++||+++ .||++||+++       +.|.+|.+++++||+.+|.+|++||++.|.|||+.|||..+
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~-------~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~   67 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE-------LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHD   67 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE-------EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCC
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE-------EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCC
Confidence            56899999999999 8999999873       89999999999999999999999999999999999999764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.38  E-value=3.7e-13  Score=118.12  Aligned_cols=99  Identities=19%  Similarity=0.313  Sum_probs=85.2

Q ss_pred             hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc---CCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHH
Q 011164          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD---TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE  468 (492)
Q Consensus       392 ~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~---~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai  468 (492)
                      .+++++.+..+++.|+.+|++|+|.+|+..|++|++++...   ....+++...+.+....+|+|+|.||+++++|.+|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            45788999999999999999999999999999999986542   233445667778899999999999999999999999


Q ss_pred             HHHHHHHhcCCCCccceeeeec
Q 011164          469 KLCTKVQQQKKFLLLPIFNIYA  490 (492)
Q Consensus       469 ~~~~~al~~dp~n~KA~~r~~~  490 (492)
                      .+|++||+++|++.+|+||+..
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~  105 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAK  105 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCcchHHHHHHHH
Confidence            9999999999999999998754

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.31  E-value=1.8e-12  Score=112.59  Aligned_cols=100  Identities=13%  Similarity=0.088  Sum_probs=81.2

Q ss_pred             CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHH
Q 011164          390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (492)
Q Consensus       390 ~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~  469 (492)
                      |.+-.....+..++..||.+|+.|+|.+|+.+|++||++....+...   .....+....+|+|+|.|+.++++|++|+.
T Consensus         2 ~~~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~   78 (159)
T 2hr2_A            2 MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALH   78 (159)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            33434477899999999999999999999999999999876532211   011234456699999999999999999999


Q ss_pred             HHHHHHhc-------CCCCccce----eeeeccC
Q 011164          470 LCTKVQQQ-------KKFLLLPI----FNIYARL  492 (492)
Q Consensus       470 ~~~~al~~-------dp~n~KA~----~r~~~~l  492 (492)
                      +|++||++       +|++.+||    ||+..+|
T Consensus        79 ~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL  112 (159)
T 2hr2_A           79 SADKALHYFNRRGELNQDEGKLWISAVYSRALAL  112 (159)
T ss_dssp             HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccCCCchHHHHHHHHHhHHHHH
Confidence            99999999       99999999    9986553

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.22  E-value=5.7e-12  Score=106.05  Aligned_cols=78  Identities=28%  Similarity=0.387  Sum_probs=63.3

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      +.+..++++||.+|++|+|.+|+..|++|++.-.               ....+|.|+|.|++++++|++|+.+|++||+
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   75 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP---------------ENAILYSNRAACLTKLMEFQRALDDCDTCIR   75 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence            4688899999999999999999999999998732               2356777788888888888888888888888


Q ss_pred             cCCCCccceeeee
Q 011164          477 QKKFLLLPIFNIY  489 (492)
Q Consensus       477 ~dp~n~KA~~r~~  489 (492)
                      ++|++.++++++.
T Consensus        76 ~~p~~~~a~~~lg   88 (126)
T 4gco_A           76 LDSKFIKGYIRKA   88 (126)
T ss_dssp             HCTTCHHHHHHHH
T ss_pred             hhhhhhHHHHHHH
Confidence            8877777777654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.20  E-value=4.7e-11  Score=108.23  Aligned_cols=120  Identities=27%  Similarity=0.384  Sum_probs=93.8

Q ss_pred             cEEEEEEEeeeeecccCCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChH-HHHHHHHHHHH
Q 011164          371 TVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVA  449 (492)
Q Consensus       371 ~l~~~v~l~~~~~~~~~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~-~~~~~~~~~~~  449 (492)
                      .......+..+++..+.|.++.++..+.+..++..|+.++++|+|.+|+..|++++++.......... .......+...
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            34455667788899999999999999999999999999999999999999999999986654332222 23334556678


Q ss_pred             hHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeec
Q 011164          450 CNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYA  490 (492)
Q Consensus       450 l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~  490 (492)
                      ++.|+|.|++++++|++|+.+|+++++++|++.++++++..
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  130 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGV  130 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            99999999999999999999999999999999999987653

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.20  E-value=2.8e-11  Score=123.07  Aligned_cols=101  Identities=25%  Similarity=0.445  Sum_probs=88.9

Q ss_pred             CCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCC
Q 011164           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (492)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~  130 (492)
                      ..++.||.|.+||+++. ||+.|+++.  +.|+.|.+|.+++++||+.+|.||++|+++.|.+|+..+||..+.     +
T Consensus       156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l-----a  227 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL-----K  227 (432)
T ss_dssp             SCCCTTCEEEECEEEES-SSCBCSSCC--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT-----S
T ss_pred             CCCCCCCEEEEEEEEee-CCeEccCCC--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC-----C
Confidence            56899999999999995 999999987  489999999999999999999999999999999999999997663     5


Q ss_pred             CCceEEEEEEEEEeecccccccccceeee
Q 011164          131 NATLQFDVELLSWTSVKDICKDGGIIKKI  159 (492)
Q Consensus       131 ~~~l~~~vel~~~~~~~~~~~d~~~~k~i  159 (492)
                      +++++|.|++.++.....+..|..+++.+
T Consensus       228 g~~~~F~V~v~~v~~~~lpeldDEfak~~  256 (432)
T 1w26_A          228 GKAAKFAINLKKVEERELPELTAEFIKRF  256 (432)
T ss_dssp             SCEEEEEEECCEECCEECCCCSHHHHTTT
T ss_pred             CceEEEEEEEEEEeccCCCCcchHHHHHh
Confidence            68999999999998766666666666543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.10  E-value=3.6e-11  Score=101.19  Aligned_cols=76  Identities=21%  Similarity=0.314  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (492)
Q Consensus       395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a  474 (492)
                      ..+.|..+|+.||.+|++|+|.+|+..|++|+++-               +....+|+|+|.||+++++|++|+.+|+++
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---------------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD---------------PSNITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            35678899999999999999999999999999872               223778999999999999999999999999


Q ss_pred             HhcCCCCccce
Q 011164          475 QQQKKFLLLPI  485 (492)
Q Consensus       475 l~~dp~n~KA~  485 (492)
                      |+++|++..++
T Consensus        69 l~~~~~~~~~~   79 (127)
T 4gcn_A           69 VEVGRETRADY   79 (127)
T ss_dssp             HHHHHHTTCCH
T ss_pred             HHhCcccchhh
Confidence            99999887543

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.10  E-value=3.9e-10  Score=114.65  Aligned_cols=88  Identities=14%  Similarity=0.247  Sum_probs=79.0

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCcccccc
Q 011164          284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQEL  363 (492)
Q Consensus       284 ~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~  363 (492)
                      ..+..||.|++||+++. ||+.|++++    ..|+.|.+|.|.+++||+.+|.||++|+++.|.+|+..+||..+     
T Consensus       156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~----~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~-----  225 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGSV-DGEEFEGGK----ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAEN-----  225 (432)
T ss_dssp             SCCCTTCEEEECEEEES-SSCBCSSCC----CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTT-----
T ss_pred             CCCCCCCEEEEEEEEee-CCeEccCCC----ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCC-----
Confidence            56899999999999995 999998763    67899999999999999999999999999999999999999653     


Q ss_pred             ccCCCCccEEEEEEEeeeeec
Q 011164          364 AVVPPNSTVHYEVELVSFEKE  384 (492)
Q Consensus       364 ~~ip~~~~l~~~v~l~~~~~~  384 (492)
                         .+|++++|+|+|+++...
T Consensus       226 ---lag~~~~F~V~v~~v~~~  243 (432)
T 1w26_A          226 ---LKGKAAKFAINLKKVEER  243 (432)
T ss_dssp             ---TSSCEEEEEEECCEECCE
T ss_pred             ---CCCceEEEEEEEEEEecc
Confidence               357899999999999863

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.06  E-value=9.6e-11  Score=117.51  Aligned_cols=101  Identities=20%  Similarity=0.428  Sum_probs=87.8

Q ss_pred             CCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCC
Q 011164           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (492)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~  130 (492)
                      ..++.||.|.+||+++ .||+.|+++.  +.|+.|.+|.+++++||+.+|.||++|+++.|.++....||..+.     +
T Consensus       159 ~~~~~gD~V~i~y~g~-~dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l-----a  230 (392)
T 1t11_A          159 EAAENGKRVSIDFVGS-IDGVEFEGGK--AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----K  230 (392)
T ss_dssp             CCCCTTCEEEEEEEEE-SSSSCCTTCE--EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----S
T ss_pred             CCCCCCCEEEEEEEEE-ECCEEccCCC--ccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCC-----C
Confidence            4689999999999999 4999999884  479999999999999999999999999999999987678886553     6


Q ss_pred             CCceEEEEEEEEEeecccccccccceeee
Q 011164          131 NATLQFDVELLSWTSVKDICKDGGIIKKI  159 (492)
Q Consensus       131 ~~~l~~~vel~~~~~~~~~~~d~~~~k~i  159 (492)
                      |++++|.|+|.++.....+..|..+++.+
T Consensus       231 Gk~~~F~V~v~~i~~~~lpeldDEfak~~  259 (392)
T 1t11_A          231 GKAAKFAIKVNKVEARELPELNDEFVARF  259 (392)
T ss_dssp             SCEEEECCCEEEEEEEECCCCSTGGGGGG
T ss_pred             CCeEEEEEEEEEEEcCCCCCcCHHHHHHh
Confidence            79999999999999877777777777654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.00  E-value=4.1e-10  Score=112.87  Aligned_cols=101  Identities=24%  Similarity=0.426  Sum_probs=86.0

Q ss_pred             ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHH
Q 011164          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (492)
Q Consensus       391 ~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~  469 (492)
                      +.++.++.+..++..|+.++++++|.+|+..|++|++++.... ....++.....+....+|+|+|.|++++++|++|+.
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  294 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD  294 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            5778899999999999999999999999999999999765421 111233334677889999999999999999999999


Q ss_pred             HHHHHHhcCCCCccceeeeecc
Q 011164          470 LCTKVQQQKKFLLLPIFNIYAR  491 (492)
Q Consensus       470 ~~~~al~~dp~n~KA~~r~~~~  491 (492)
                      +|++||+++|++.+|+|++..+
T Consensus       295 ~~~~al~~~p~~~~a~~~lg~~  316 (370)
T 1ihg_A          295 SCLEALEIDPSNTKALYRRAQG  316 (370)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhCchhHHHHHHHHHH
Confidence            9999999999999999987643

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.94  E-value=4e-10  Score=112.98  Aligned_cols=88  Identities=14%  Similarity=0.339  Sum_probs=76.5

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCcccccc
Q 011164          284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQEL  363 (492)
Q Consensus       284 ~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~  363 (492)
                      ..+..||.|++||+++. ||+.|+++    ...++.|.+|.|.+++||+.+|.||++|+++.|.++....||..+     
T Consensus       159 ~~~~~gD~V~i~y~g~~-dG~~fd~~----~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~-----  228 (392)
T 1t11_A          159 EAAENGKRVSIDFVGSI-DGVEFEGG----KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN-----  228 (392)
T ss_dssp             CCCCTTCEEEEEEEEES-SSSCCTTC----EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT-----
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEccCC----CccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCC-----
Confidence            46899999999999995 89999765    467999999999999999999999999999999997556677432     


Q ss_pred             ccCCCCccEEEEEEEeeeeec
Q 011164          364 AVVPPNSTVHYEVELVSFEKE  384 (492)
Q Consensus       364 ~~ip~~~~l~~~v~l~~~~~~  384 (492)
                         .+|++++|+|+|+++...
T Consensus       229 ---laGk~~~F~V~v~~i~~~  246 (392)
T 1t11_A          229 ---LKGKAAKFAIKVNKVEAR  246 (392)
T ss_dssp             ---TSSCEEEECCCEEEEEEE
T ss_pred             ---CCCCeEEEEEEEEEEEcC
Confidence               358899999999999864

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.88  E-value=1.1e-09  Score=91.08  Aligned_cols=77  Identities=19%  Similarity=0.243  Sum_probs=69.1

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..++..|+.+++.|+|.+|+..|+++++.-.               ....++.|+|.|++++++|++|+.++++++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP---------------EDARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---------------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            567899999999999999999999999998732               23688999999999999999999999999999


Q ss_pred             CCCCccceeeee
Q 011164          478 KKFLLLPIFNIY  489 (492)
Q Consensus       478 dp~n~KA~~r~~  489 (492)
                      +|++.++++++.
T Consensus        68 ~p~~~~~~~~lg   79 (126)
T 3upv_A           68 DPNFVRAYIRKA   79 (126)
T ss_dssp             CTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHH
Confidence            999999988764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.73  E-value=1.1e-08  Score=82.46  Aligned_cols=77  Identities=27%  Similarity=0.360  Sum_probs=67.1

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|+.+++.|+|.+|+..|+++++...               ....++.|+|.|++++++|++|+.++++++++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP---------------QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            356788999999999999999999999998732               22677999999999999999999999999999


Q ss_pred             CCCC------ccceeeee
Q 011164          478 KKFL------LLPIFNIY  489 (492)
Q Consensus       478 dp~n------~KA~~r~~  489 (492)
                      +|++      .++++++.
T Consensus        68 ~p~~~~~~~~~~~~~~~~   85 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLE   85 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHH
Confidence            9998      77776643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.72  E-value=8.3e-09  Score=89.50  Aligned_cols=79  Identities=15%  Similarity=0.134  Sum_probs=69.8

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+...|..+++.|+|.+|+..|++++..               .+.....+.|+|.|+.++++|++|+.++.++++
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---------------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---------------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            34667889999999999999999999999987               333477899999999999999999999999999


Q ss_pred             cCCCCccceeeeec
Q 011164          477 QKKFLLLPIFNIYA  490 (492)
Q Consensus       477 ~dp~n~KA~~r~~~  490 (492)
                      ++|+++.++|++..
T Consensus        99 l~P~~~~~~~~lg~  112 (151)
T 3gyz_A           99 LGKNDYTPVFHTGQ  112 (151)
T ss_dssp             HSSSCCHHHHHHHH
T ss_pred             hCCCCcHHHHHHHH
Confidence            99999999987643

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.68  E-value=1.2e-08  Score=89.16  Aligned_cols=78  Identities=15%  Similarity=0.066  Sum_probs=58.4

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+...|+.+++.|+|.+|+..|+++++.-..               ...++.|+|.|++++++|++|+.++.++++
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   73 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---------------NPIYLSNRAAAYSASGQHEKAAEDAELATV   73 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            45778899999999999999999999999987322               245666677777777777777777777777


Q ss_pred             cCCCCccceeeee
Q 011164          477 QKKFLLLPIFNIY  489 (492)
Q Consensus       477 ~dp~n~KA~~r~~  489 (492)
                      ++|++..+++++.
T Consensus        74 ~~p~~~~~~~~lg   86 (164)
T 3sz7_A           74 VDPKYSKAWSRLG   86 (164)
T ss_dssp             HCTTCHHHHHHHH
T ss_pred             hCCCCHHHHHHHH
Confidence            7776666666543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.56  E-value=5.3e-08  Score=81.45  Aligned_cols=75  Identities=13%  Similarity=0.163  Sum_probs=65.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.|+|.+|+..|++++++               ++....+|.|+|.|+.++++|++|+.++.++|+++
T Consensus        47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           47 AILYSNRAACLTKLMEFQRALDDCDTCIRL---------------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhHHHhhccHHHHHHHHHHHHHh---------------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            345678899999999999999999999987               22346789999999999999999999999999999


Q ss_pred             CCCccceeee
Q 011164          479 KFLLLPIFNI  488 (492)
Q Consensus       479 p~n~KA~~r~  488 (492)
                      |+|..|+..+
T Consensus       112 P~~~~a~~~l  121 (126)
T 4gco_A          112 PSNEEAREGV  121 (126)
T ss_dssp             TTCHHHHHHH
T ss_pred             cCCHHHHHHH
Confidence            9999887543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.52  E-value=2.5e-07  Score=74.51  Aligned_cols=79  Identities=15%  Similarity=0.029  Sum_probs=66.1

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      ..-+.|+.+|++++|..|+..|++|++........        ......++.|+|.|+.++|+++.|+...+++|+++|+
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~--------~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~   78 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC--------cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence            45578999999999999999999999986433211        1234678899999999999999999999999999999


Q ss_pred             Cccceee
Q 011164          481 LLLPIFN  487 (492)
Q Consensus       481 n~KA~~r  487 (492)
                      +..++.+
T Consensus        79 ~~~~~~n   85 (104)
T 2v5f_A           79 HQRANGN   85 (104)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHhh
Confidence            9877654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.48  E-value=1e-07  Score=82.04  Aligned_cols=77  Identities=12%  Similarity=0.056  Sum_probs=63.1

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..+++.|+|.+|+..|++++..-               +....++.|+|.|+.++++|++|+..+++++.+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---------------HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            45567789999999999999999999999862               223667788888888888888888888888888


Q ss_pred             CCCCccceeeee
Q 011164          478 KKFLLLPIFNIY  489 (492)
Q Consensus       478 dp~n~KA~~r~~  489 (492)
                      +|++..++|++.
T Consensus        85 ~p~~~~~~~~lg   96 (148)
T 2vgx_A           85 DIXEPRFPFHAA   96 (148)
T ss_dssp             STTCTHHHHHHH
T ss_pred             CCCCchHHHHHH
Confidence            888888877653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.48  E-value=1.1e-07  Score=82.06  Aligned_cols=76  Identities=9%  Similarity=-0.086  Sum_probs=63.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      .......|+.+++.|+|.+|+..|+++++.-               +....+|.|+|.|+.++++|++|+.++.++++++
T Consensus        31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~   95 (150)
T 4ga2_A           31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---------------ERDPKAHRFLGLLYELEENTDKAVECYRRSVELN   95 (150)
T ss_dssp             HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence            4455678999999999999999999999872               2336788899999999999999999999999999


Q ss_pred             CCCccceeeee
Q 011164          479 KFLLLPIFNIY  489 (492)
Q Consensus       479 p~n~KA~~r~~  489 (492)
                      |++..+++++.
T Consensus        96 p~~~~~~~~la  106 (150)
T 4ga2_A           96 PTQKDLVLKIA  106 (150)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            99888887654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.47  E-value=9e-08  Score=80.20  Aligned_cols=76  Identities=29%  Similarity=0.343  Sum_probs=65.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|+.+++.|+|.+|+..|+++++.-..               ...++.|+|.|++++++|++|+..+.++++++
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   73 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---------------VAVYYTNRALCYLKMQQPEQALADCRRALELD   73 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            567789999999999999999999999987322               25688999999999999999999999999999


Q ss_pred             CCCccceeeee
Q 011164          479 KFLLLPIFNIY  489 (492)
Q Consensus       479 p~n~KA~~r~~  489 (492)
                      |++..+++++.
T Consensus        74 p~~~~~~~~l~   84 (137)
T 3q49_B           74 GQSVKAHFFLG   84 (137)
T ss_dssp             TTCHHHHHHHH
T ss_pred             chhHHHHHHHH
Confidence            99988887654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.44  E-value=8.3e-08  Score=92.05  Aligned_cols=77  Identities=30%  Similarity=0.355  Sum_probs=68.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..++..|+.+++.|+|.+|+..|+++++.-.               ....+++|+|.|++++++|++|+.+++++++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~   68 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP---------------LVAVYYTNRALCYLKMQQPEQALADCRRALELD   68 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999998732               236789999999999999999999999999999


Q ss_pred             CCCccceeeeec
Q 011164          479 KFLLLPIFNIYA  490 (492)
Q Consensus       479 p~n~KA~~r~~~  490 (492)
                      |++.++++++..
T Consensus        69 p~~~~~~~~lg~   80 (281)
T 2c2l_A           69 GQSVKAHFFLGQ   80 (281)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            999999887653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.43  E-value=1.8e-07  Score=79.60  Aligned_cols=76  Identities=18%  Similarity=0.118  Sum_probs=61.8

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..+++.|+|.+|+..|++++..-               +....++.|+|.|+.++++|++|+..+++++.+
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   81 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD---------------HYDARYFLGLGACRQSLGLYEQALQSYSYGALM   81 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC---------------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            35567788999999999999999999999862               223567788888888888888888888888888


Q ss_pred             CCCCccceeee
Q 011164          478 KKFLLLPIFNI  488 (492)
Q Consensus       478 dp~n~KA~~r~  488 (492)
                      +|++..+++++
T Consensus        82 ~p~~~~~~~~l   92 (142)
T 2xcb_A           82 DINEPRFPFHA   92 (142)
T ss_dssp             CTTCTHHHHHH
T ss_pred             CCCCcHHHHHH
Confidence            88888777654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.42  E-value=2.1e-07  Score=73.43  Aligned_cols=69  Identities=12%  Similarity=-0.034  Sum_probs=61.0

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHH-hHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA-CNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~-l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      ..+|..+++.|+|.+|+..|+++++.-..               ... ++.|+|.|++++++|++|+..+.++++++|++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPV---------------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSS---------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            46789999999999999999999986321               245 89999999999999999999999999999999


Q ss_pred             cccee
Q 011164          482 LLPIF  486 (492)
Q Consensus       482 ~KA~~  486 (492)
                      ..+++
T Consensus        69 ~~~~~   73 (99)
T 2kc7_A           69 PALQA   73 (99)
T ss_dssp             THHHH
T ss_pred             HHHHH
Confidence            88773

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.39  E-value=3.9e-07  Score=70.24  Aligned_cols=76  Identities=22%  Similarity=0.217  Sum_probs=65.9

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..+++.++|.+|+..|+++++....               ...++.|+|.|+.++++|++|+..+.+++++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3456778899999999999999999999986321               2567899999999999999999999999999


Q ss_pred             CCCCccceeee
Q 011164          478 KKFLLLPIFNI  488 (492)
Q Consensus       478 dp~n~KA~~r~  488 (492)
                      +|++..+++++
T Consensus        73 ~p~~~~~~~~l   83 (91)
T 1na3_A           73 DPNNAEAKQNL   83 (91)
T ss_dssp             CTTCHHHHHHH
T ss_pred             CCCCHHHHHHH
Confidence            99998887664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.37  E-value=2.1e-07  Score=77.12  Aligned_cols=74  Identities=9%  Similarity=-0.026  Sum_probs=62.1

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+...|..+++.|+|.+|+..|+++++.-               +....++.++|.|+.+++++.+|+..+.++++++|+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE---------------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            35678899999999999999999999872               223678889999999999999999999999999999


Q ss_pred             Cccceeeee
Q 011164          481 LLLPIFNIY  489 (492)
Q Consensus       481 n~KA~~r~~  489 (492)
                      +..+++++.
T Consensus        84 ~~~~~~~la   92 (121)
T 1hxi_A           84 DIAVHAALA   92 (121)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            888876653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.36  E-value=4.6e-07  Score=76.50  Aligned_cols=80  Identities=28%  Similarity=0.405  Sum_probs=64.9

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..+++.++|.+|+..|+++++....            ......++.|+|.|++++++|++|+..|.+++++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT------------PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc------------chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            3566788999999999999999999999976321            2335678888888888888888888888888888


Q ss_pred             CCCCccceeeee
Q 011164          478 KKFLLLPIFNIY  489 (492)
Q Consensus       478 dp~n~KA~~r~~  489 (492)
                      +|++..+++++.
T Consensus        95 ~~~~~~~~~~~a  106 (148)
T 2dba_A           95 DGGDVKALYRRS  106 (148)
T ss_dssp             TSCCHHHHHHHH
T ss_pred             CccCHHHHHHHH
Confidence            888887776653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.33  E-value=6.6e-07  Score=77.13  Aligned_cols=81  Identities=22%  Similarity=0.229  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHH
Q 011164          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (492)
Q Consensus       392 ~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~  471 (492)
                      .....+.+..+...|+.+++.|+|.+|+..|+++++....               ...++.|+|.|++++++|++|+..+
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~   70 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS---------------NAIYYGNRSLAYLRTECYGYALGDA   70 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3567788999999999999999999999999999986322               1344555555555555555555555


Q ss_pred             HHHHhcCCCCccceee
Q 011164          472 TKVQQQKKFLLLPIFN  487 (492)
Q Consensus       472 ~~al~~dp~n~KA~~r  487 (492)
                      .++++++|++..++++
T Consensus        71 ~~a~~~~~~~~~~~~~   86 (166)
T 1a17_A           71 TRAIELDKKYIKGYYR   86 (166)
T ss_dssp             HHHHHHCTTCHHHHHH
T ss_pred             HHHHHhCcccHHHHHH
Confidence            5555555555544443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.28  E-value=6.2e-07  Score=72.12  Aligned_cols=73  Identities=23%  Similarity=0.166  Sum_probs=42.4

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|+.++..|+|.+|+..|++++......               ..++.++|.|++++++|++|+..+.+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            45667778888888888888888888888763211               233444444444444444444444444444


Q ss_pred             CCCCccce
Q 011164          478 KKFLLLPI  485 (492)
Q Consensus       478 dp~n~KA~  485 (492)
                      +|++..++
T Consensus        68 ~~~~~~~~   75 (118)
T 1elw_A           68 KPDWGKGY   75 (118)
T ss_dssp             CTTCHHHH
T ss_pred             CcccHHHH
Confidence            44444333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.28  E-value=5.7e-07  Score=78.25  Aligned_cols=77  Identities=12%  Similarity=-0.037  Sum_probs=67.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.|+|.+|+..|+++++.-.               ....++.|+|.|+.++++|++|+.++.++++++
T Consensus        45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDP---------------KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            34567889999999999999999999998722               237789999999999999999999999999999


Q ss_pred             CCCccceeeeec
Q 011164          479 KFLLLPIFNIYA  490 (492)
Q Consensus       479 p~n~KA~~r~~~  490 (492)
                      |++..++++..+
T Consensus       110 p~~~~~~~~~~l  121 (164)
T 3sz7_A          110 GNGGSDAMKRGL  121 (164)
T ss_dssp             SSSCCHHHHHHH
T ss_pred             CCchHHHHHHHH
Confidence            999988776543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.26  E-value=5.5e-07  Score=79.65  Aligned_cols=67  Identities=13%  Similarity=0.001  Sum_probs=58.9

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+...|..+++.|+|.+|+..|+++++.-               +....++.|+|.|+.++|+|++|+.++++||+++|+
T Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          109 AYYKLGLVYDSMGEHDKAIEAYEKTISIK---------------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHhc---------------chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            45677899999999999999999999872               233678999999999999999999999999999998


Q ss_pred             Cc
Q 011164          481 LL  482 (492)
Q Consensus       481 n~  482 (492)
                      |.
T Consensus       174 ~a  175 (184)
T 3vtx_A          174 KA  175 (184)
T ss_dssp             HH
T ss_pred             CH
Confidence            64

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.26  E-value=1.8e-06  Score=74.65  Aligned_cols=77  Identities=14%  Similarity=0.005  Sum_probs=63.7

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhH----hHHHHHHHHhcCHHHHHHHHHH
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN----LNNAACKLKLKDYKQAEKLCTK  473 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~----~N~a~~~lk~~~~~~ai~~~~~  473 (492)
                      .+..+-.+|..+.+.|+|.+|+..|.+||.+++......++        ...+|    +|++.|+.++++|++|+.++++
T Consensus        56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd--------~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k  127 (159)
T 2hr2_A           56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD--------EGKLWISAVYSRALALDGLGRGAEAMPEFKK  127 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST--------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc--------hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence            34578899999999999999999999999975443333222        34455    9999999999999999999999


Q ss_pred             HHhcCCCCc
Q 011164          474 VQQQKKFLL  482 (492)
Q Consensus       474 al~~dp~n~  482 (492)
                      ||+++|++.
T Consensus       128 Alel~p~d~  136 (159)
T 2hr2_A          128 VVEMIEERK  136 (159)
T ss_dssp             HHHHHHHCC
T ss_pred             HHhcCCCcH
Confidence            999999753

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.22  E-value=2e-06  Score=78.23  Aligned_cols=89  Identities=10%  Similarity=0.028  Sum_probs=48.8

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChH-HHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~-~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      +..+..+|..+++.|+|.+|+..|+++++.-.......-. ...........+++|+|.|+.++++|++|+..++++|++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            5567889999999999999999999999862210000000 000000111122223555555555555555555555555


Q ss_pred             CCCCccceee
Q 011164          478 KKFLLLPIFN  487 (492)
Q Consensus       478 dp~n~KA~~r  487 (492)
                      +|++..++++
T Consensus        84 ~p~~~~~~~~   93 (208)
T 3urz_A           84 APNNVDCLEA   93 (208)
T ss_dssp             CTTCHHHHHH
T ss_pred             CCCCHHHHHH
Confidence            5555555443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.17  E-value=1.7e-06  Score=78.65  Aligned_cols=71  Identities=18%  Similarity=0.099  Sum_probs=63.9

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL  483 (492)
Q Consensus       404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K  483 (492)
                      ..|..+++.|+|.+|+..|+++++.-               +....++.|+|.|++++|+|++|+..++++|+++|+|..
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  123 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKA---------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA  123 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            38999999999999999999999872               223778999999999999999999999999999999999


Q ss_pred             ceeeee
Q 011164          484 PIFNIY  489 (492)
Q Consensus       484 A~~r~~  489 (492)
                      +++++.
T Consensus       124 a~~~lg  129 (208)
T 3urz_A          124 ANIFLG  129 (208)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.17  E-value=9.2e-07  Score=72.98  Aligned_cols=90  Identities=24%  Similarity=0.217  Sum_probs=53.3

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc-----------CCCC--hHHHHH------HHHHHHHhHhHHHHHH
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-----------TSFG--DEEKKQ------AKALKVACNLNNAACK  458 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-----------~~~~--~~~~~~------~~~~~~~l~~N~a~~~  458 (492)
                      ....+...|+.+++.++|.+|+..|+++++.....           ....  ++....      ..+....++.|+|.|+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            35677788888999999999999999988753211           0000  000000      1112234566666666


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCccceee
Q 011164          459 LKLKDYKQAEKLCTKVQQQKKFLLLPIFN  487 (492)
Q Consensus       459 lk~~~~~~ai~~~~~al~~dp~n~KA~~r  487 (492)
                      +++++|++|+..+.++++++|++..++++
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  123 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSSCKEAADG  123 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGGGTHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCchHHHHH
Confidence            66666666666666666666665555443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.16  E-value=2.2e-06  Score=74.00  Aligned_cols=69  Identities=14%  Similarity=0.081  Sum_probs=60.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.|+|.+|+..|++++++-.               .....+.|+|.|++++|++++|+..+++|++++
T Consensus        70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P---------------~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A           70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGK---------------NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS---------------SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC---------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44566789999999999999999999999732               236789999999999999999999999999999


Q ss_pred             CCCc
Q 011164          479 KFLL  482 (492)
Q Consensus       479 p~n~  482 (492)
                      |++.
T Consensus       135 ~~~~  138 (151)
T 3gyz_A          135 NDEK  138 (151)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            8753

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.15  E-value=9.9e-07  Score=91.54  Aligned_cols=88  Identities=19%  Similarity=0.199  Sum_probs=78.1

Q ss_pred             CCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHH
Q 011164          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (492)
Q Consensus       387 ~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~  466 (492)
                      ...++.++..+.+..+...|+.++++|+|.+|+..|+++++.-.               ....++.|+|.|++++++|++
T Consensus        13 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~~~   77 (537)
T 3fp2_A           13 LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP---------------NEPVFYSNISACYISTGDLEK   77 (537)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHHTCHHH
T ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC---------------CCcHHHHHHHHHHHHcCCHHH
Confidence            44678888999999999999999999999999999999998732               236889999999999999999


Q ss_pred             HHHHHHHHHhcCCCCccceeeee
Q 011164          467 AEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       467 ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      |+..++++++++|++..++++..
T Consensus        78 A~~~~~~al~~~p~~~~~~~~la  100 (537)
T 3fp2_A           78 VIEFTTKALEIKPDHSKALLRRA  100 (537)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCchHHHHHHHH
Confidence            99999999999999999887654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.14  E-value=2.5e-06  Score=69.78  Aligned_cols=93  Identities=14%  Similarity=0.010  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHHHH------HHHHHHHhHhHH
Q 011164          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKKQ------AKALKVACNLNN  454 (492)
Q Consensus       394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~~------~~~~~~~l~~N~  454 (492)
                      .....+..+...|..++..++|.+|+..|++++.......             ...++....      ..+....++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            3455677788888888888999999999888887632110             000000000      011123355556


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCcccee
Q 011164          455 AACKLKLKDYKQAEKLCTKVQQQKKFLLLPIF  486 (492)
Q Consensus       455 a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~  486 (492)
                      |.++.++++|++|+..+.++++++|++..+++
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  118 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELDPDNETYKS  118 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCccchHHHH
Confidence            66666666666666666666666665554443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.13  E-value=3.7e-06  Score=68.63  Aligned_cols=73  Identities=21%  Similarity=0.126  Sum_probs=63.4

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+...|..+++.|+|.+|+..|+++++.-.               ....++.|+|.|+.++|+|++|+..+.++++
T Consensus        25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   89 (117)
T 3k9i_A           25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP---------------NHQALRVFYAMVLYNLGRYEQGVELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3456678899999999999999999999998732               2267899999999999999999999999999


Q ss_pred             cCCCCccc
Q 011164          477 QKKFLLLP  484 (492)
Q Consensus       477 ~dp~n~KA  484 (492)
                      .+|++...
T Consensus        90 ~~p~~~~~   97 (117)
T 3k9i_A           90 ETSDDETI   97 (117)
T ss_dssp             HHCCCHHH
T ss_pred             hCCCcHHH
Confidence            99987643

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.12  E-value=1.2e-06  Score=75.92  Aligned_cols=73  Identities=8%  Similarity=0.044  Sum_probs=64.0

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..+++.|+|.+|+..|++++++               .+....+|.++|.|++++++|++|+.++.++|++
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~---------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKR---------------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---------------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            4556778899999999999999999999987               2234778999999999999999999999999999


Q ss_pred             CCCCccce
Q 011164          478 KKFLLLPI  485 (492)
Q Consensus       478 dp~n~KA~  485 (492)
                      +|+|..++
T Consensus       127 ~p~~~~~~  134 (162)
T 3rkv_A          127 HPAAASVV  134 (162)
T ss_dssp             CGGGHHHH
T ss_pred             CCCCHHHH
Confidence            99987443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.10  E-value=1.4e-06  Score=94.58  Aligned_cols=93  Identities=15%  Similarity=0.033  Sum_probs=59.4

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHH------HHHHHHHHHhHhHHHHH
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEK------KQAKALKVACNLNNAAC  457 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~------~~~~~~~~~l~~N~a~~  457 (492)
                      ..+..+...|+.+.++|+|++|+..|++||++-....             ...++..      -++++....+|+|+|.+
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4567778888888888888888888888887632110             0000000      11122334567777777


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          458 KLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       458 ~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      +.++++|++|+..+++||+++|++..|++++.
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg  118 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLA  118 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            77777777777777777777777777766543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.10  E-value=2.1e-06  Score=68.21  Aligned_cols=69  Identities=12%  Similarity=-0.055  Sum_probs=59.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.|+|.+|+..|+++++.-.               ....++.|+|.|+.++++|++|+..+.+++++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDP---------------DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            34567889999999999999999999998722               235689999999999999999999999999997


Q ss_pred             CCCc
Q 011164          479 KFLL  482 (492)
Q Consensus       479 p~n~  482 (492)
                      |.+.
T Consensus        72 ~~~~   75 (100)
T 3ma5_A           72 REEG   75 (100)
T ss_dssp             HHHS
T ss_pred             hcCC
Confidence            7543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.10  E-value=1.4e-06  Score=69.42  Aligned_cols=73  Identities=16%  Similarity=0.092  Sum_probs=57.0

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+...|..+++.++|.+|+..|+++++....               ...++.|+|.+++++++|++|+..++++++++|+
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---------------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            3456778888889999999999998876321               1456788888888888888888888888888888


Q ss_pred             --Cccceeee
Q 011164          481 --LLLPIFNI  488 (492)
Q Consensus       481 --n~KA~~r~  488 (492)
                        +..+++++
T Consensus        73 ~~~~~~~~~l   82 (112)
T 2kck_A           73 EYNKDVWAAK   82 (112)
T ss_dssp             TTCHHHHHHH
T ss_pred             cchHHHHHHH
Confidence              77766654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.08  E-value=1.9e-05  Score=65.60  Aligned_cols=74  Identities=15%  Similarity=0.037  Sum_probs=62.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.|+|.+|+..|++++++-......        ......+|.|++.|+.++++|++|+..+.++|..+
T Consensus        42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD--------YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh--------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4456789999999999999999999999874432211        34557789999999999999999999999999998


Q ss_pred             CC
Q 011164          479 KF  480 (492)
Q Consensus       479 p~  480 (492)
                      |+
T Consensus       114 ~~  115 (127)
T 4gcn_A          114 RD  115 (127)
T ss_dssp             CC
T ss_pred             cC
Confidence            75

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.07  E-value=6.2e-07  Score=92.81  Aligned_cols=75  Identities=24%  Similarity=0.220  Sum_probs=38.6

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|+.++++|+|.+|+..|++|++.-..               ...++.|+|.|++++++|++|+.++++|+++
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   69 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS---------------NAIYYGNRSLAYLRTECYGYALGDATRAIEL   69 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            4455556666666666666666666666654211               1334444444444444444444444444444


Q ss_pred             CCCCccceee
Q 011164          478 KKFLLLPIFN  487 (492)
Q Consensus       478 dp~n~KA~~r  487 (492)
                      +|++.+++++
T Consensus        70 ~p~~~~~~~~   79 (477)
T 1wao_1           70 DKKYIKGYYR   79 (477)
T ss_dssp             CTTCHHHHHH
T ss_pred             CCCCHHHHHH
Confidence            4444444443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.06  E-value=2.6e-06  Score=78.11  Aligned_cols=75  Identities=21%  Similarity=0.289  Sum_probs=53.1

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|+.+++.|+|.+|+..|+++++....              ....++.|+|.|+.++++|++|+.++.++++++|
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   73 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN--------------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY   73 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC--------------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc
Confidence            46778999999999999999999999987420              0124555666666666666666666666666666


Q ss_pred             CCccceeee
Q 011164          480 FLLLPIFNI  488 (492)
Q Consensus       480 ~n~KA~~r~  488 (492)
                      ++..+++++
T Consensus        74 ~~~~~~~~l   82 (228)
T 4i17_A           74 NLANAYIGK   82 (228)
T ss_dssp             SHHHHHHHH
T ss_pred             chHHHHHHH
Confidence            666655543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.06  E-value=2.3e-06  Score=70.15  Aligned_cols=76  Identities=28%  Similarity=0.328  Sum_probs=65.1

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..+++.|+|.+|+..|++++.....               ...++.|+|.|++++++|++|+..+.+++.+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   67 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            4667889999999999999999999999987321               2578899999999999999999999999999


Q ss_pred             CCCC-------ccceeee
Q 011164          478 KKFL-------LLPIFNI  488 (492)
Q Consensus       478 dp~n-------~KA~~r~  488 (492)
                      +|++       ..+++++
T Consensus        68 ~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A           68 GRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHH
Confidence            8876       5555544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.04  E-value=3.8e-06  Score=69.22  Aligned_cols=68  Identities=12%  Similarity=0.070  Sum_probs=34.7

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      +...|..+++.|+|.+|+..|+++++.....            .....++.++|.|++++++|++|+..+.++++.+|++
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNG------------VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence            3455666666666666666666666542211            0112344445555555555555555555555555544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.04  E-value=1.5e-06  Score=74.77  Aligned_cols=69  Identities=12%  Similarity=-0.059  Sum_probs=59.6

Q ss_pred             hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI  485 (492)
Q Consensus       406 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~  485 (492)
                      |+-+.+++++++|+..|++++..               .+.....+.++|.||+++++|++|+.+++++|+++|++..++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~---------------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~   68 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPS---------------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAH   68 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCS---------------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHcChHHHHHHHHHHhccc---------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            56667789999999999999975               556677889999999999999999999999999999999998


Q ss_pred             eeee
Q 011164          486 FNIY  489 (492)
Q Consensus       486 ~r~~  489 (492)
                      +++.
T Consensus        69 ~~lg   72 (150)
T 4ga2_A           69 RFLG   72 (150)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.04  E-value=5.1e-06  Score=68.58  Aligned_cols=70  Identities=11%  Similarity=-0.104  Sum_probs=55.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.|++.+|+..|+++++.-               +....++.|+|.|+.+++++++|+..+.++++++
T Consensus        51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           51 EEAWRSLGLTQAENEKDGLAIIALNHARMLD---------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3456678999999999999999999999872               2236688999999999999999999999999999


Q ss_pred             CCCcc
Q 011164          479 KFLLL  483 (492)
Q Consensus       479 p~n~K  483 (492)
                      |++.+
T Consensus       116 P~~~~  120 (121)
T 1hxi_A          116 PQYEQ  120 (121)
T ss_dssp             -----
T ss_pred             cCCCC
Confidence            98764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.04  E-value=3.8e-06  Score=72.54  Aligned_cols=70  Identities=11%  Similarity=0.148  Sum_probs=58.2

Q ss_pred             HHHHHHHhhhHHHHcccH----------HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc-----
Q 011164          398 AAGKKKEQGNTLFKAGKY----------ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-----  462 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~----------~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~-----  462 (492)
                      .+..+...|+.+.+.+++          ++|+..|++||++               ++....+|+|++.+|.+++     
T Consensus        35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---------------dP~~~~A~~~LG~ay~~lg~l~P~   99 (158)
T 1zu2_A           35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---------------DPKKDEAVWCIGNAYTSFAFLTPD   99 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---------------CcCcHHHHHHHHHHHHHhcccCcc
Confidence            344566788877777665          5999999999987               4445888999999999985     


Q ss_pred             ------CHHHHHHHHHHHHhcCCCCc
Q 011164          463 ------DYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       463 ------~~~~ai~~~~~al~~dp~n~  482 (492)
                            +|++|+.++++||+++|+|.
T Consensus       100 ~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A          100 ETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             hhhhhccHHHHHHHHHHHHHhCCCCH
Confidence                  89999999999999999874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.04  E-value=4.2e-06  Score=86.07  Aligned_cols=79  Identities=27%  Similarity=0.280  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (492)
Q Consensus       395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a  474 (492)
                      +.+.+..++..|+.+++.|+|.+|+..|+++++.-.                ...++.++|.|++++++|++|+..++++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----------------~~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE----------------DPVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc----------------cHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            457789999999999999999999999999998631                1568999999999999999999999999


Q ss_pred             HhcCCCCccceeeee
Q 011164          475 QQQKKFLLLPIFNIY  489 (492)
Q Consensus       475 l~~dp~n~KA~~r~~  489 (492)
                      ++++|++..+++++.
T Consensus        66 l~~~p~~~~~~~~l~   80 (514)
T 2gw1_A           66 LELKPDYSKVLLRRA   80 (514)
T ss_dssp             HHHCSCCHHHHHHHH
T ss_pred             hccChHHHHHHHHHH
Confidence            999999998887654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.03  E-value=7e-06  Score=70.35  Aligned_cols=70  Identities=16%  Similarity=0.020  Sum_probs=60.4

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.|+|.+|+..|++++..-.               ....++.|+|.|++++|++++|+..+.++++++|
T Consensus        56 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  120 (148)
T 2vgx_A           56 RFFLGLGACRQAMGQYDLAIHSYSYGAVMDI---------------XEPRFPFHAAECLLQXGELAEAESGLFLAQELIA  120 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            3456788999999999999999999998732               2356789999999999999999999999999999


Q ss_pred             CCccc
Q 011164          480 FLLLP  484 (492)
Q Consensus       480 ~n~KA  484 (492)
                      +++..
T Consensus       121 ~~~~~  125 (148)
T 2vgx_A          121 NXPEF  125 (148)
T ss_dssp             TCGGG
T ss_pred             CCCcc
Confidence            87643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.01  E-value=5.3e-06  Score=68.40  Aligned_cols=72  Identities=15%  Similarity=0.093  Sum_probs=62.1

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.|+|.+|+..|+++++.-.               ....++.|+|.|+.++++|++|+.++.++++++
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP---------------NFVRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---------------CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            34567889999999999999999999998722               236789999999999999999999999999999


Q ss_pred             ------CCCccce
Q 011164          479 ------KFLLLPI  485 (492)
Q Consensus       479 ------p~n~KA~  485 (492)
                            |++..++
T Consensus       103 p~~~~~p~~~~~~  115 (126)
T 3upv_A          103 AEVNNGSSAREID  115 (126)
T ss_dssp             HHHHTTTTHHHHH
T ss_pred             cccCCchhHHHHH
Confidence                  8776543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.99  E-value=5e-06  Score=73.33  Aligned_cols=74  Identities=14%  Similarity=0.048  Sum_probs=58.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|+.++++|+|++|+..|+++++.-               +....++.++|.|+.++++|++|+..+.+++..+
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~   69 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD---------------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD   69 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            4456788999999999999999999999872               2235677788888888888888888888888888


Q ss_pred             CCCccceee
Q 011164          479 KFLLLPIFN  487 (492)
Q Consensus       479 p~n~KA~~r  487 (492)
                      |++..+++.
T Consensus        70 ~~~~~~~~~   78 (184)
T 3vtx_A           70 TTSAEAYYI   78 (184)
T ss_dssp             CCCHHHHHH
T ss_pred             chhHHHHHH
Confidence            777666543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.98  E-value=7.3e-06  Score=69.38  Aligned_cols=70  Identities=17%  Similarity=0.078  Sum_probs=60.3

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.|+|.+|+..|++++..-.               ....++.|+|.|++++|+|++|+..+.++++++|
T Consensus        53 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           53 RYFLGLGACRQSLGLYEQALQSYSYGALMDI---------------NEPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3456788999999999999999999998732               2356789999999999999999999999999999


Q ss_pred             CCccc
Q 011164          480 FLLLP  484 (492)
Q Consensus       480 ~n~KA  484 (492)
                      +++..
T Consensus       118 ~~~~~  122 (142)
T 2xcb_A          118 AQPAH  122 (142)
T ss_dssp             TCGGG
T ss_pred             CCcch
Confidence            87643

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.93  E-value=1.8e-06  Score=70.62  Aligned_cols=68  Identities=21%  Similarity=0.059  Sum_probs=53.8

Q ss_pred             HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeec
Q 011164          411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYA  490 (492)
Q Consensus       411 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~  490 (492)
                      ..|+|.+|+..|+++++.-..            .+....++.|+|.|++++++|++|+..+.++++++|++..+++++..
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   69 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQ------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM   69 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCC------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            368899999999999974100            24567889999999999999999999999999999999988877543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.93  E-value=4.7e-06  Score=90.41  Aligned_cols=92  Identities=14%  Similarity=0.019  Sum_probs=66.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHH------HHHHHHHHHhHhHHHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEK------KQAKALKVACNLNNAACKL  459 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~------~~~~~~~~~l~~N~a~~~l  459 (492)
                      +..+...|+.+++.|+|.+|+..|++|+++-....             ...++..      -++++....+|+|+|.++.
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~  122 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK  122 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34456778888888888888888888887532110             0000111      1123344678999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCccceeeeec
Q 011164          460 KLKDYKQAEKLCTKVQQQKKFLLLPIFNIYA  490 (492)
Q Consensus       460 k~~~~~~ai~~~~~al~~dp~n~KA~~r~~~  490 (492)
                      ++|++++|+..+++||+++|++..|++++..
T Consensus       123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~  153 (723)
T 4gyw_A          123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAH  153 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHhhhhh
Confidence            9999999999999999999999999887643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.93  E-value=3.5e-06  Score=77.16  Aligned_cols=75  Identities=19%  Similarity=0.107  Sum_probs=66.0

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.|+|.+|+..|+++++.-               +....++.|+|.++.+++++++|+..++++++++|
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P   70 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKEN---------------PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP   70 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            456788999999999999999999999862               23477899999999999999999999999999999


Q ss_pred             CCccceeeee
Q 011164          480 FLLLPIFNIY  489 (492)
Q Consensus       480 ~n~KA~~r~~  489 (492)
                      ++..+++++.
T Consensus        71 ~~~~a~~~lg   80 (217)
T 2pl2_A           71 RYLGGYMVLS   80 (217)
T ss_dssp             TCHHHHHHHH
T ss_pred             CcHHHHHHHH
Confidence            9998877643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.91  E-value=6.9e-06  Score=75.14  Aligned_cols=73  Identities=14%  Similarity=-0.022  Sum_probs=62.7

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+...|..+++.|++.+|+..|+++++.-                ....++.|+|.|+.++|+|++|+..++++++++|+
T Consensus       120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  183 (217)
T 2pl2_A          120 LHLQRGLVYALLGERDKAEASLKQALALE----------------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK  183 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcc----------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            45567888889999999999999999862                12667899999999999999999999999999999


Q ss_pred             Cccceeeee
Q 011164          481 LLLPIFNIY  489 (492)
Q Consensus       481 n~KA~~r~~  489 (492)
                      +..+++++.
T Consensus       184 ~~~~~~~la  192 (217)
T 2pl2_A          184 DLDLRVRYA  192 (217)
T ss_dssp             CHHHHHHHH
T ss_pred             ChHHHHHHH
Confidence            998877653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.90  E-value=1.6e-05  Score=73.02  Aligned_cols=78  Identities=9%  Similarity=0.050  Sum_probs=65.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..++++|+|.+|+..|+++++.....            .....++.++|.|++++++|++|+..++++++.+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   71 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   71 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            3456788999999999999999999999863321            1235688999999999999999999999999999


Q ss_pred             CCCcc---ceeee
Q 011164          479 KFLLL---PIFNI  488 (492)
Q Consensus       479 p~n~K---A~~r~  488 (492)
                      |++..   |+|++
T Consensus        72 P~~~~~~~a~~~~   84 (225)
T 2yhc_A           72 PTHPNIDYVMYMR   84 (225)
T ss_dssp             TTCTTHHHHHHHH
T ss_pred             cCCCcHHHHHHHH
Confidence            99987   66644

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.90  E-value=1.3e-05  Score=64.05  Aligned_cols=74  Identities=14%  Similarity=-0.014  Sum_probs=63.4

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.++|.+|+..|+++++...               ....++.|+|.|+.++++|++|+..+.++++++|
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  103 (118)
T 1elw_A           39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP---------------DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA  103 (118)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhCc---------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            3456778889999999999999999998732               1256889999999999999999999999999999


Q ss_pred             CCccceeee
Q 011164          480 FLLLPIFNI  488 (492)
Q Consensus       480 ~n~KA~~r~  488 (492)
                      ++..+++++
T Consensus       104 ~~~~~~~~l  112 (118)
T 1elw_A          104 NNPQLKEGL  112 (118)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            998776653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.89  E-value=4.7e-06  Score=83.54  Aligned_cols=89  Identities=6%  Similarity=-0.134  Sum_probs=43.5

Q ss_pred             HHHHHhhhHHHHccc-HHHHHHHHHHHHHHhccc--------------CCCChH-----HHHHHHHHHHHhHhHHHHHHH
Q 011164          400 GKKKEQGNTLFKAGK-YARASKRYEKAVKYIEYD--------------TSFGDE-----EKKQAKALKVACNLNNAACKL  459 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~-~~~A~~~Y~~al~~l~~~--------------~~~~~~-----~~~~~~~~~~~l~~N~a~~~l  459 (492)
                      ..+..+|+.+++.|+ |.+|+..|+++++.-...              ....+.     ..-.+++-...+|+|++.|+.
T Consensus       132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~  211 (382)
T 2h6f_A          132 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ  211 (382)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHH
Confidence            344566666666675 777777777777642110              000000     001112222344555555555


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164          460 KLKDYKQAEKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       460 k~~~~~~ai~~~~~al~~dp~n~KA~~r~  488 (492)
                      ++++|++|+.+++++|+++|+|..||+++
T Consensus       212 ~~g~~~eAl~~~~~al~l~P~~~~a~~~l  240 (382)
T 2h6f_A          212 EFKLWDNELQYVDQLLKEDVRNNSVWNQR  240 (382)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            55555555555555555555555555443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.88  E-value=9.4e-06  Score=66.72  Aligned_cols=27  Identities=15%  Similarity=0.150  Sum_probs=14.8

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKY  428 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~  428 (492)
                      +...|..+++.++|.+|+..|+++++.
T Consensus        53 ~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A           53 YSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             HHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            344455555555566666555555554

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=97.87  E-value=2.1e-05  Score=79.69  Aligned_cols=88  Identities=14%  Similarity=0.093  Sum_probs=74.3

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCC
Q 011164           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (492)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~  131 (492)
                      .++.||.|.|+|+++ .||..|+++..  .++.+.+|.+.  + |+.+|.||++|+++.|.+..              +|
T Consensus       154 ~a~~gD~V~id~~~~-~dG~~~~~~~~--~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF--------------aG  213 (433)
T 3gty_X          154 PAEAGDLVRVNMEVY-NEEGKKLTSRE--YEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY--------------EG  213 (433)
T ss_dssp             CCCTTSEEEEEEEEE-CTTSCEEEEEE--EEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE--------------TT
T ss_pred             ccCCCCEEEEEEEEE-ECCEECcCCCC--CCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee--------------CC
Confidence            467999999999988 59999998754  68888899887  3 99999999999999999843              35


Q ss_pred             CceEEEEEEEEEeecccccccccceeee
Q 011164          132 ATLQFDVELLSWTSVKDICKDGGIIKKI  159 (492)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i  159 (492)
                      .+..|.|.+..+.....+..|..+++.+
T Consensus       214 k~a~F~VtV~~Ik~~~lPEldDEfak~~  241 (433)
T 3gty_X          214 KKYTYKLEVEEVYKRTLPEIGDELAKSV  241 (433)
T ss_dssp             EEEEEEEEEEEEEEECCCCSSHHHHHTT
T ss_pred             CeEEEEEEEEEEEEecCCcccHHHHHHh
Confidence            7899999999999877777777777754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.86  E-value=1.6e-05  Score=71.31  Aligned_cols=74  Identities=12%  Similarity=-0.020  Sum_probs=64.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.++|.+|+..|+++++.-.               ....++.|+|.|++++++|++|+..+.++++++
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  152 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDK---------------NNVKALYKLGVANMYFGFLEEAKENLYKAASLN  152 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence            45677889999999999999999999998722               236789999999999999999999999999999


Q ss_pred             CCCccceee
Q 011164          479 KFLLLPIFN  487 (492)
Q Consensus       479 p~n~KA~~r  487 (492)
                      |++..++..
T Consensus       153 p~~~~~~~~  161 (198)
T 2fbn_A          153 PNNLDIRNS  161 (198)
T ss_dssp             TTCHHHHHH
T ss_pred             CCcHHHHHH
Confidence            998766544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.84  E-value=7.9e-06  Score=81.89  Aligned_cols=92  Identities=12%  Similarity=-0.049  Sum_probs=58.2

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc-------------CCC-ChHHHH------HHHHHHHHhHhHHHHH
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------------TSF-GDEEKK------QAKALKVACNLNNAAC  457 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-------------~~~-~~~~~~------~~~~~~~~l~~N~a~~  457 (492)
                      .+..+...|..+++.|+|.+|+..|+++|+.-...             ... .++...      .+.+-...+|+|++.|
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~  175 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            35567778899999999999999999999863221             000 111111      1122234466667777


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          458 KLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       458 ~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      +.++++|++|+.+++++|+++|+|..||+++.
T Consensus       176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg  207 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQ  207 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCccCHHHHHHHH
Confidence            77777777777777777777776666666543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.82  E-value=3.4e-06  Score=72.82  Aligned_cols=65  Identities=11%  Similarity=0.019  Sum_probs=56.7

Q ss_pred             HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHH----------HHHHHHHHHHhcCCC
Q 011164          411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK----------QAEKLCTKVQQQKKF  480 (492)
Q Consensus       411 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~----------~ai~~~~~al~~dp~  480 (492)
                      +.+.|++|+..|++++..               .+.....|.|++.|++++++++          +||..+++||+++|+
T Consensus        14 r~~~feeA~~~~~~Ai~l---------------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~   78 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS---------------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHhHHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence            557899999999999987               3345889999999999998764          999999999999999


Q ss_pred             Cccceeeeec
Q 011164          481 LLLPIFNIYA  490 (492)
Q Consensus       481 n~KA~~r~~~  490 (492)
                      +..|||+.-.
T Consensus        79 ~~~A~~~LG~   88 (158)
T 1zu2_A           79 KDEAVWCIGN   88 (158)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9999987643

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.80  E-value=1.3e-05  Score=72.28  Aligned_cols=34  Identities=12%  Similarity=-0.039  Sum_probs=17.6

Q ss_pred             HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      .+++|+|.|++++++|++|+..+++++++.|++.
T Consensus        72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence            3445555555555555555555555555555443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.80  E-value=2.2e-05  Score=65.92  Aligned_cols=73  Identities=15%  Similarity=-0.002  Sum_probs=63.1

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      ...+...|..+++.++|.+|+..|+++++....               ...++.|+|.|+.++++|++|+..+.++++++
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGG---------------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            456677888999999999999999999987321               26778999999999999999999999999999


Q ss_pred             CCCcccee
Q 011164          479 KFLLLPIF  486 (492)
Q Consensus       479 p~n~KA~~  486 (492)
                      |++..++.
T Consensus       130 p~~~~~~~  137 (148)
T 2dba_A          130 PKNKVFQE  137 (148)
T ss_dssp             SSCHHHHH
T ss_pred             CCcHHHHH
Confidence            99876554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.79  E-value=1.6e-05  Score=71.63  Aligned_cols=74  Identities=18%  Similarity=0.108  Sum_probs=64.7

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|+.+++.|+|.+|+..|++++..                  ...++.|+|.|++++++|++|+..+++++++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   66 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP------------------HSRICFNIGCMYTILKNMTEAEKAFTRSINR   66 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4556778999999999999999999998521                  1468999999999999999999999999999


Q ss_pred             CCCCccceeeee
Q 011164          478 KKFLLLPIFNIY  489 (492)
Q Consensus       478 dp~n~KA~~r~~  489 (492)
                      +|++..+++++.
T Consensus        67 ~~~~~~~~~~lg   78 (213)
T 1hh8_A           67 DKHLAVAYFQRG   78 (213)
T ss_dssp             CTTCHHHHHHHH
T ss_pred             CccchHHHHHHH
Confidence            999998887654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.79  E-value=4.2e-05  Score=62.77  Aligned_cols=73  Identities=10%  Similarity=0.007  Sum_probs=61.2

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.|+|.+|+..|+++++.....            .....++.++|.|+.+++++++|+..++++++.+|
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  107 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTH------------DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP  107 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            355678899999999999999999999863321            12356789999999999999999999999999999


Q ss_pred             CCccc
Q 011164          480 FLLLP  484 (492)
Q Consensus       480 ~n~KA  484 (492)
                      ++..+
T Consensus       108 ~~~~~  112 (129)
T 2xev_A          108 GSDAA  112 (129)
T ss_dssp             TSHHH
T ss_pred             CChHH
Confidence            87643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.78  E-value=2.4e-05  Score=63.70  Aligned_cols=27  Identities=26%  Similarity=0.289  Sum_probs=15.9

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKY  428 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~  428 (492)
                      +...|..++..++|.+|+..|.++++.
T Consensus        49 ~~~~a~~~~~~~~~~~A~~~~~~~~~~   75 (131)
T 2vyi_A           49 FCNRAAAYSKLGNYAGAVQDCERAICI   75 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence            344555556666666666666666654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.77  E-value=6.5e-05  Score=64.12  Aligned_cols=69  Identities=16%  Similarity=0.062  Sum_probs=51.9

Q ss_pred             HhhhHHHHcc---cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          404 EQGNTLFKAG---KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       404 ~~Gn~~fk~~---~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      ..|..+.+.+   ++++|+..++..++.-      .       ...+..+++|+|..++|+++|.+|+++|+++|+++|+
T Consensus        37 ~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~------~-------p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~  103 (152)
T 1pc2_A           37 EYAWCLVRSKYNDDIRKGIVLLEELLPKG------S-------KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ  103 (152)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHS------C-------HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcC------C-------ccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence            3444455544   5667777777766530      0       1145778999999999999999999999999999999


Q ss_pred             Cccce
Q 011164          481 LLLPI  485 (492)
Q Consensus       481 n~KA~  485 (492)
                      |..|.
T Consensus       104 n~QA~  108 (152)
T 1pc2_A          104 NNQAK  108 (152)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            98764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.75  E-value=4.7e-05  Score=69.50  Aligned_cols=83  Identities=7%  Similarity=-0.003  Sum_probs=65.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      ...+...|..+++.|+|.+|+..|+++++.....        .........+|.|++.++.++++|++|+..++++++++
T Consensus        76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  147 (228)
T 4i17_A           76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN--------ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT  147 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--------HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC
Confidence            3456677888888888888888888888763221        22344556789999999999999999999999999999


Q ss_pred             CC--Cccceeeee
Q 011164          479 KF--LLLPIFNIY  489 (492)
Q Consensus       479 p~--n~KA~~r~~  489 (492)
                      |+  +..+++++.
T Consensus       148 p~~~~~~~~~~l~  160 (228)
T 4i17_A          148 SKKWKTDALYSLG  160 (228)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHH
Confidence            99  888877653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.73  E-value=3.5e-05  Score=62.10  Aligned_cols=89  Identities=20%  Similarity=0.158  Sum_probs=52.3

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHHHHH------HHHHHHhHhHHHHHHHH
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKKQA------KALKVACNLNNAACKLK  460 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~~~------~~~~~~l~~N~a~~~lk  460 (492)
                      ..+...|..+++.++|.+|+..|+++++......             ...++....+      .+....++.++|.++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   89 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK   89 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            3445566666777777777777777765421100             0000000000      11124567788888888


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164          461 LKDYKQAEKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       461 ~~~~~~ai~~~~~al~~dp~n~KA~~r~  488 (492)
                      +++|++|+..+.++++++|++..+++++
T Consensus        90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l  117 (125)
T 1na0_A           90 QGDYDEAIEYYQKALELDPNNAEAKQNL  117 (125)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            8888888888888888888777665543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.73  E-value=2.5e-05  Score=77.90  Aligned_cols=74  Identities=16%  Similarity=-0.010  Sum_probs=63.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.++|.+|+..|++|++.-               +....++.|+|.||+++++|++|+.++++|++++
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~  337 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---------------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA  337 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---------------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            3445678888999999999999999999862               2236789999999999999999999999999999


Q ss_pred             CCCccceee
Q 011164          479 KFLLLPIFN  487 (492)
Q Consensus       479 p~n~KA~~r  487 (492)
                      |++..++..
T Consensus       338 P~~~~~~~~  346 (370)
T 1ihg_A          338 PEDKAIQAE  346 (370)
T ss_dssp             TTCHHHHHH
T ss_pred             CCCHHHHHH
Confidence            998766543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.72  E-value=4.1e-05  Score=61.85  Aligned_cols=67  Identities=9%  Similarity=-0.095  Sum_probs=58.1

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.|+|.+|+..|+++++.-.               ....++.|+|.|+.+++++++|+..+.++++++|
T Consensus        20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   84 (115)
T 2kat_A           20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDP---------------TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHCC---------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            3566789999999999999999999998722               2356789999999999999999999999999988


Q ss_pred             CC
Q 011164          480 FL  481 (492)
Q Consensus       480 ~n  481 (492)
                      .+
T Consensus        85 ~~   86 (115)
T 2kat_A           85 SR   86 (115)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.71  E-value=4.7e-05  Score=60.19  Aligned_cols=69  Identities=14%  Similarity=0.122  Sum_probs=58.8

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHh-cCHHHHHHHHHHHHhcCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~-~~~~~ai~~~~~al~~dp  479 (492)
                      .+...|..+++.++|.+|+..|+++++....             .....++.|+|.|+.++ +++++|+..+.+++..+|
T Consensus        42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           42 YWLMKGKALYNLERYEEAVDCYNYVINVIED-------------EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-------------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-------------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence            4567888999999999999999999986322             01256889999999999 999999999999999999


Q ss_pred             CCc
Q 011164          480 FLL  482 (492)
Q Consensus       480 ~n~  482 (492)
                      ++.
T Consensus       109 ~~~  111 (112)
T 2kck_A          109 HHH  111 (112)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            764

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=97.69  E-value=0.00015  Score=73.51  Aligned_cols=76  Identities=16%  Similarity=0.234  Sum_probs=63.5

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCccccccc
Q 011164          285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELA  364 (492)
Q Consensus       285 ~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~~  364 (492)
                      ....||.|+++|++. .||..|+++    ...++.+.+|.+.  + |+.+|.||++||...|.+..              
T Consensus       154 ~a~~gD~V~id~~~~-~dG~~~~~~----~~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF--------------  211 (433)
T 3gty_X          154 PAEAGDLVRVNMEVY-NEEGKKLTS----REYEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY--------------  211 (433)
T ss_dssp             CCCTTSEEEEEEEEE-CTTSCEEEE----EEEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE--------------
T ss_pred             ccCCCCEEEEEEEEE-ECCEECcCC----CCCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee--------------
Confidence            467899999999998 489999865    3467888899887  3 99999999999999999832              


Q ss_pred             cCCCCccEEEEEEEeeeeecc
Q 011164          365 VVPPNSTVHYEVELVSFEKEK  385 (492)
Q Consensus       365 ~ip~~~~l~~~v~l~~~~~~~  385 (492)
                         +|.+..|.|+|.+|....
T Consensus       212 ---aGk~a~F~VtV~~Ik~~~  229 (433)
T 3gty_X          212 ---EGKKYTYKLEVEEVYKRT  229 (433)
T ss_dssp             ---TTEEEEEEEEEEEEEEEC
T ss_pred             ---CCCeEEEEEEEEEEEEec
Confidence               366799999999998643

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.67  E-value=4.2e-05  Score=70.49  Aligned_cols=75  Identities=20%  Similarity=0.262  Sum_probs=60.1

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.|+|.+|+..|++++.....               ...++.|+|.|++++++|++|+..++++++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKD  203 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc---------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            445667899999999999999999999986322               24677888888888888888888888888888


Q ss_pred             CCCccceeee
Q 011164          479 KFLLLPIFNI  488 (492)
Q Consensus       479 p~n~KA~~r~  488 (492)
                      |++..+++++
T Consensus       204 ~~~~~~~~~l  213 (258)
T 3uq3_A          204 PNFVRAYIRK  213 (258)
T ss_dssp             TTCHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887776654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.66  E-value=4.8e-05  Score=63.12  Aligned_cols=67  Identities=13%  Similarity=0.113  Sum_probs=58.9

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.++|.+|+..|+++++.-.               ....++.|+|.|+.++++|++|+..+.++++++|
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  108 (137)
T 3q49_B           44 VYYTNRALCYLKMQQPEQALADCRRALELDG---------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  108 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence            4567789999999999999999999998732               2366899999999999999999999999999998


Q ss_pred             CC
Q 011164          480 FL  481 (492)
Q Consensus       480 ~n  481 (492)
                      ++
T Consensus       109 ~~  110 (137)
T 3q49_B          109 EQ  110 (137)
T ss_dssp             HT
T ss_pred             hH
Confidence            73

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.65  E-value=5.6e-05  Score=60.87  Aligned_cols=27  Identities=33%  Similarity=0.567  Sum_probs=17.1

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKY  428 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~  428 (492)
                      +...|..+++.++|.+|+..|+++++.
T Consensus        46 ~~~la~~~~~~~~~~~A~~~~~~~~~~   72 (125)
T 1na0_A           46 WYNLGNAYYKQGDYDEAIEYYQKALEL   72 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            344556666666777777777666654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.65  E-value=6.8e-05  Score=64.13  Aligned_cols=71  Identities=13%  Similarity=0.037  Sum_probs=61.7

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.|+|.+|+..|+++++...               ....++.|+|.|+.++++|++|+..+.++++++|
T Consensus        48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p  112 (166)
T 1a17_A           48 IYYGNRSLAYLRTECYGYALGDATRAIELDK---------------KYIKGYYRRAASNMALGKFRAALRDYETVVKVKP  112 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            3456778889999999999999999998732               1256889999999999999999999999999999


Q ss_pred             CCccce
Q 011164          480 FLLLPI  485 (492)
Q Consensus       480 ~n~KA~  485 (492)
                      ++..++
T Consensus       113 ~~~~~~  118 (166)
T 1a17_A          113 HDKDAK  118 (166)
T ss_dssp             TCHHHH
T ss_pred             CCHHHH
Confidence            988765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.64  E-value=8.6e-05  Score=69.44  Aligned_cols=78  Identities=15%  Similarity=0.169  Sum_probs=64.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..++++|+|.+|+..|+++++....            .+....++.++|.|++++++|++|+..++++++++
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT------------HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------------CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence            456788999999999999999999999986432            12346789999999999999999999999999999


Q ss_pred             CCCc---cceeee
Q 011164          479 KFLL---LPIFNI  488 (492)
Q Consensus       479 p~n~---KA~~r~  488 (492)
                      |++.   .|+|++
T Consensus        83 p~~~~~~~a~~~l   95 (261)
T 3qky_A           83 QIDPRVPQAEYER   95 (261)
T ss_dssp             TTCTTHHHHHHHH
T ss_pred             CCCchhHHHHHHH
Confidence            8764   355543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.63  E-value=0.00011  Score=59.66  Aligned_cols=77  Identities=16%  Similarity=0.131  Sum_probs=61.6

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.|+|.+|+..|++++.........        ......++.|+|.++.++++|++|+..+.++++++|
T Consensus        39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh--------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            345677888999999999999999999874432111        223477899999999999999999999999999988


Q ss_pred             CCccce
Q 011164          480 FLLLPI  485 (492)
Q Consensus       480 ~n~KA~  485 (492)
                       +..++
T Consensus       111 -~~~~~  115 (131)
T 1elr_A          111 -TPDVL  115 (131)
T ss_dssp             -CHHHH
T ss_pred             -CHHHH
Confidence             45443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.62  E-value=5e-05  Score=66.38  Aligned_cols=84  Identities=14%  Similarity=0.126  Sum_probs=53.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc--------------CCCC--hHHHHHH------HHHHHHhHhHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD--------------TSFG--DEEKKQA------KALKVACNLNNAA  456 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~--------------~~~~--~~~~~~~------~~~~~~l~~N~a~  456 (492)
                      +..+...|..++..|+|.+|+..|+++++.....              ....  ++....+      .+....++.|+|.
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  123 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS  123 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            3456788899999999999999999999764321              0000  1111111      1122445666777


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          457 CKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       457 ~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      +++++++|++|+..+.++++++|++.
T Consensus       124 ~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          124 DAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            77777777777777777777776654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.61  E-value=4.6e-05  Score=73.85  Aligned_cols=75  Identities=24%  Similarity=0.135  Sum_probs=60.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|+.+++.|+|.+|+..|+++++....               ...++.++|.|++++++|++|+..+.++++++
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---------------NYIAYYRRATVFLAMGKSKAALPDLTKVIALK   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            456788999999999999999999999986321               24677888888888888888888888888888


Q ss_pred             CCCccceeee
Q 011164          479 KFLLLPIFNI  488 (492)
Q Consensus       479 p~n~KA~~r~  488 (492)
                      |++..++++.
T Consensus        68 ~~~~~~~~~l   77 (359)
T 3ieg_A           68 MDFTAARLQR   77 (359)
T ss_dssp             TTCHHHHHHH
T ss_pred             CCcchHHHHH
Confidence            8877766554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.58  E-value=6.1e-05  Score=70.31  Aligned_cols=76  Identities=13%  Similarity=-0.029  Sum_probs=54.1

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..++..|+|.+|+..|+++++.-..               ...++.++|.++.++++|++|+..+.+++++
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  106 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL  106 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            4556677888999999999999999999986321               2445666677777777777777777777777


Q ss_pred             CCCCccceeee
Q 011164          478 KKFLLLPIFNI  488 (492)
Q Consensus       478 dp~n~KA~~r~  488 (492)
                      +|++..+++++
T Consensus       107 ~~~~~~~~~~l  117 (275)
T 1xnf_A          107 DPTYNYAHLNR  117 (275)
T ss_dssp             CTTCTHHHHHH
T ss_pred             CccccHHHHHH
Confidence            66666555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.58  E-value=3.2e-05  Score=71.32  Aligned_cols=69  Identities=25%  Similarity=0.343  Sum_probs=62.3

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+...|+.+++.|+|.+|+..|+++++.. .               ...++.++|.|+.++++|++|+..+.++++
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~   66 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K---------------DITYLNNRAAAEYEKGEYETAISTLNDAVE   66 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C---------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c---------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            457889999999999999999999999999873 1               256899999999999999999999999999


Q ss_pred             cCCCC
Q 011164          477 QKKFL  481 (492)
Q Consensus       477 ~dp~n  481 (492)
                      ++|++
T Consensus        67 ~~~~~   71 (258)
T 3uq3_A           67 QGREM   71 (258)
T ss_dssp             HHHHT
T ss_pred             hCccc
Confidence            99876

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.57  E-value=0.00016  Score=69.02  Aligned_cols=76  Identities=13%  Similarity=0.096  Sum_probs=63.6

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|+.++..|+|.+|+..|++|++.+.....        .......+++|+|.+|.++++|++|+..++++|++
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~  225 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3456788899999999999999999999987654322        14567889999999999999999999999999998


Q ss_pred             CCCC
Q 011164          478 KKFL  481 (492)
Q Consensus       478 dp~n  481 (492)
                      .+.+
T Consensus       226 ~~~~  229 (293)
T 3u3w_A          226 SCRI  229 (293)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            6543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.55  E-value=3.9e-05  Score=82.91  Aligned_cols=74  Identities=19%  Similarity=0.188  Sum_probs=60.3

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+...|..+++.|+|.+|+..|+++++.-               +....+++|+|.+++++++|++|+.++++||+++|+
T Consensus       435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  499 (681)
T 2pzi_A          435 LPLMEVRALLDLGDVAKATRKLDDLAERV---------------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG  499 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccC---------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            45677888999999999999999999863               223667888888888888888888888888888888


Q ss_pred             Cccceeeee
Q 011164          481 LLLPIFNIY  489 (492)
Q Consensus       481 n~KA~~r~~  489 (492)
                      +..+++++.
T Consensus       500 ~~~~~~~lg  508 (681)
T 2pzi_A          500 ELAPKLALA  508 (681)
T ss_dssp             CSHHHHHHH
T ss_pred             ChHHHHHHH
Confidence            887776543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.54  E-value=7.1e-05  Score=77.24  Aligned_cols=75  Identities=13%  Similarity=0.046  Sum_probs=65.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.|+|++|+..|++|++.-               +....+++|+|.+|.++++|++|+..++++++++
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELD---------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4456788999999999999999999999862               2236789999999999999999999999999999


Q ss_pred             CCCccceeee
Q 011164          479 KFLLLPIFNI  488 (492)
Q Consensus       479 p~n~KA~~r~  488 (492)
                      |++..+++.+
T Consensus       105 p~~~~~~~~l  114 (477)
T 1wao_1          105 PHDKDAKMKY  114 (477)
T ss_dssp             TTCTTHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9998876554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.48  E-value=0.00049  Score=65.72  Aligned_cols=76  Identities=29%  Similarity=0.256  Sum_probs=62.4

Q ss_pred             HHHHHHhhhHHHHc-ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          399 AGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       399 a~~~K~~Gn~~fk~-~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      +..+...|..+.+. |+|.+|+..|++|+++......         ......+++|++.+++++++|++|+..+++++++
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  187 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45667788888886 9999999999999998543211         2234678999999999999999999999999999


Q ss_pred             CCCCcc
Q 011164          478 KKFLLL  483 (492)
Q Consensus       478 dp~n~K  483 (492)
                      +|++..
T Consensus       188 ~~~~~~  193 (292)
T 1qqe_A          188 SMGNRL  193 (292)
T ss_dssp             TSSCTT
T ss_pred             HhcCCc
Confidence            987754

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.45  E-value=0.00032  Score=67.79  Aligned_cols=76  Identities=21%  Similarity=0.259  Sum_probs=44.5

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ......|+.+++.|+|.+|+..|++++......           ......++.++|.|+.++++|++|+..++++++++|
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  303 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSV-----------AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP  303 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----------hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            344566888888999999999999888764321           112233444455555555555555555555555555


Q ss_pred             CCcccee
Q 011164          480 FLLLPIF  486 (492)
Q Consensus       480 ~n~KA~~  486 (492)
                      ++..+++
T Consensus       304 ~~~~~~~  310 (359)
T 3ieg_A          304 DNVNALK  310 (359)
T ss_dssp             TCHHHHH
T ss_pred             ccHHHHH
Confidence            4444443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.45  E-value=6.6e-05  Score=73.70  Aligned_cols=72  Identities=11%  Similarity=-0.045  Sum_probs=48.6

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+...|..+++.|+|.+|+..|+++++.-..               ...++.+++.++.++++|++|+..+.++++++|+
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  131 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPG---------------DAEAWQFLGITQAENENEQAAIVALQRCLELQPN  131 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            3556788888888888888888888876321               1445666666666666666666666666666666


Q ss_pred             Cccceee
Q 011164          481 LLLPIFN  487 (492)
Q Consensus       481 n~KA~~r  487 (492)
                      +..++++
T Consensus       132 ~~~~~~~  138 (365)
T 4eqf_A          132 NLKALMA  138 (365)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            6555544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.44  E-value=0.00013  Score=69.92  Aligned_cols=42  Identities=14%  Similarity=0.166  Sum_probs=38.8

Q ss_pred             HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      ..+++|+|.|++++|+|++|+..+.++|+++|+|..+++++.
T Consensus       200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~  241 (291)
T 3mkr_A          200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV  241 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            568999999999999999999999999999999999988764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.44  E-value=0.00049  Score=65.59  Aligned_cols=74  Identities=14%  Similarity=0.088  Sum_probs=61.2

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|+.++..|+|.+|+..|++|+.........        ......+++|+|.||.++++|++|+..+++++++
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            35677788999999999999999999999876543221        2233478999999999999999999999999988


Q ss_pred             CC
Q 011164          478 KK  479 (492)
Q Consensus       478 dp  479 (492)
                      .+
T Consensus       226 ~~  227 (293)
T 2qfc_A          226 SC  227 (293)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.44  E-value=6.4e-05  Score=70.18  Aligned_cols=73  Identities=14%  Similarity=0.074  Sum_probs=52.4

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      +...|..+++.|+|.+|+..|+++++.-.               ....++.|+|.|+.++++|++|+..++++++++|.+
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  141 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDT---------------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD  141 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHST---------------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCc---------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence            45667777777777777777777777522               124567778888888888888888888888888877


Q ss_pred             ccceeeee
Q 011164          482 LLPIFNIY  489 (492)
Q Consensus       482 ~KA~~r~~  489 (492)
                      ..+++++.
T Consensus       142 ~~~~~~l~  149 (272)
T 3u4t_A          142 PKVFYELG  149 (272)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77666543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.42  E-value=7.4e-05  Score=76.99  Aligned_cols=77  Identities=16%  Similarity=0.012  Sum_probs=64.1

Q ss_pred             HHHHhhhHHHHc--------ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHH
Q 011164          401 KKKEQGNTLFKA--------GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (492)
Q Consensus       401 ~~K~~Gn~~fk~--------~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~  472 (492)
                      .+...|+.+++.        ++|.+|+..|++|++.-..            ......+++|+|.||.++++|++|+..+.
T Consensus       215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  282 (474)
T 4abn_A          215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK------------ASSNPDLHLNRATLHKYEESYGEALEGFS  282 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC------------cccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            455678888888        9999999999999987220            00347889999999999999999999999


Q ss_pred             HHHhcCCCCccceeeee
Q 011164          473 KVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       473 ~al~~dp~n~KA~~r~~  489 (492)
                      ++++++|++..+++++.
T Consensus       283 ~al~l~p~~~~a~~~l~  299 (474)
T 4abn_A          283 QAAALDPAWPEPQQREQ  299 (474)
T ss_dssp             HHHHHCTTCHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHH
Confidence            99999999988776653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.38  E-value=5.7e-05  Score=79.56  Aligned_cols=89  Identities=8%  Similarity=-0.107  Sum_probs=50.8

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHHH------HHHHHHHHhHhHHHHHHHH
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKK------QAKALKVACNLNNAACKLK  460 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~------~~~~~~~~l~~N~a~~~lk  460 (492)
                      ..+...|..+++.|+|.+|+..|+++++.-....             ...++...      +..+....++.|+|.|+.+
T Consensus        24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  103 (568)
T 2vsy_A           24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED  103 (568)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            4455667777777777777777777776421100             00000000      0111224566777777777


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164          461 LKDYKQAEKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       461 ~~~~~~ai~~~~~al~~dp~n~KA~~r~  488 (492)
                      +++|++|+..++++++++|++..+++++
T Consensus       104 ~g~~~~A~~~~~~al~~~p~~~~~~~~l  131 (568)
T 2vsy_A          104 AGQAEAAAAAYTRAHQLLPEEPYITAQL  131 (568)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            7777777777777777777766665544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.37  E-value=3.4e-05  Score=83.35  Aligned_cols=92  Identities=9%  Similarity=0.023  Sum_probs=69.7

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc--------------CCCC-hHHH---HHHHHHHHHhHhHHHHHHHHh
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD--------------TSFG-DEEK---KQAKALKVACNLNNAACKLKL  461 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~--------------~~~~-~~~~---~~~~~~~~~l~~N~a~~~lk~  461 (492)
                      ..+...|..+++.|+|++|+..|++|++.-...              .... .+..   -++++....+++|+|.|++++
T Consensus       468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg~~~~~~  547 (681)
T 2pzi_A          468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAE  547 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHHHHHHHc
Confidence            355678899999999999999999999864321              0011 1111   122344567899999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCccceeeeecc
Q 011164          462 KDYKQAEKLCTKVQQQKKFLLLPIFNIYAR  491 (492)
Q Consensus       462 ~~~~~ai~~~~~al~~dp~n~KA~~r~~~~  491 (492)
                      |+|++|+.++++|++++|++..|+++...+
T Consensus       548 g~~~~A~~~~~~al~l~P~~~~a~~~~~~~  577 (681)
T 2pzi_A          548 GDRVGAVRTLDEVPPTSRHFTTARLTSAVT  577 (681)
T ss_dssp             TCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence            999999999999999999999998876544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.36  E-value=0.00026  Score=71.31  Aligned_cols=76  Identities=21%  Similarity=0.251  Sum_probs=46.2

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ......|+.+++.|+|.+|+..|+++++.....           ......++.++|.++.++++|++|+..++++++++|
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSI-----------AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS-----------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            344566999999999999999999999863221           112233445555555555555555555555555555


Q ss_pred             CCcccee
Q 011164          480 FLLLPIF  486 (492)
Q Consensus       480 ~n~KA~~  486 (492)
                      ++..+++
T Consensus       327 ~~~~~~~  333 (450)
T 2y4t_A          327 DNVNALK  333 (450)
T ss_dssp             TCHHHHH
T ss_pred             ccHHHHH
Confidence            5444443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.35  E-value=0.00015  Score=71.02  Aligned_cols=74  Identities=12%  Similarity=0.093  Sum_probs=58.8

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.|+|.+|+..|+++++....               ...+++|++.++.++++|++|+..+.++++++|
T Consensus       214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  278 (365)
T 4eqf_A          214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE---------------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQP  278 (365)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            34566788888999999999999999986321               255788888888888888888888888888888


Q ss_pred             CCccceeee
Q 011164          480 FLLLPIFNI  488 (492)
Q Consensus       480 ~n~KA~~r~  488 (492)
                      ++..+++++
T Consensus       279 ~~~~~~~~l  287 (365)
T 4eqf_A          279 GFIRSRYNL  287 (365)
T ss_dssp             TCHHHHHHH
T ss_pred             CchHHHHHH
Confidence            887776654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.34  E-value=0.00017  Score=72.63  Aligned_cols=76  Identities=25%  Similarity=0.155  Sum_probs=55.0

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+...|+.+++.|+|.+|+..|+++++....               ...++.++|.|++++++|++|+..+.++++
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   88 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---------------NYIAYYRRATVFLAMGKSKAALPDLTKVIQ   88 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            45677888999999999999999999999975221               255666666666666666666666666666


Q ss_pred             cCCCCccceee
Q 011164          477 QKKFLLLPIFN  487 (492)
Q Consensus       477 ~dp~n~KA~~r  487 (492)
                      ++|++..++++
T Consensus        89 ~~p~~~~~~~~   99 (450)
T 2y4t_A           89 LKMDFTAARLQ   99 (450)
T ss_dssp             HCTTCHHHHHH
T ss_pred             cCCCcHHHHHH
Confidence            66666655544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.32  E-value=0.00023  Score=63.82  Aligned_cols=72  Identities=17%  Similarity=0.021  Sum_probs=45.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..++..|++.+|+..|+++++....               ...++.+++.++.++++|++|+..+.++++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   72 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---------------NELAWLVRAEIYQYLKVNDKAQESFRQALSIK   72 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---------------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            455667788888888888888888888875321               13345555555556666666666666665555


Q ss_pred             CCCccce
Q 011164          479 KFLLLPI  485 (492)
Q Consensus       479 p~n~KA~  485 (492)
                      |++..++
T Consensus        73 ~~~~~~~   79 (225)
T 2vq2_A           73 PDSAEIN   79 (225)
T ss_dssp             TTCHHHH
T ss_pred             CCChHHH
Confidence            5554443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.32  E-value=0.00014  Score=71.07  Aligned_cols=72  Identities=13%  Similarity=0.014  Sum_probs=45.7

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+...|..+++.|+|.+|+..|+++++.-..               ...++.++|.|+.++++|++|+..+.++++++|+
T Consensus        66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  130 (368)
T 1fch_A           66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK---------------HMEAWQYLGTTQAENEQELLAISALRRCLELKPD  130 (368)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC
Confidence            3456788888888899999998888875221               1344555555555555555555555555555555


Q ss_pred             Cccceee
Q 011164          481 LLLPIFN  487 (492)
Q Consensus       481 n~KA~~r  487 (492)
                      +..++++
T Consensus       131 ~~~~~~~  137 (368)
T 1fch_A          131 NQTALMA  137 (368)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            5554443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.29  E-value=0.0002  Score=58.23  Aligned_cols=41  Identities=17%  Similarity=0.121  Sum_probs=33.1

Q ss_pred             HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164          448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~  488 (492)
                      ..++.++|.++.++++|++|+..+.++++.+|++..+++.+
T Consensus        69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  109 (136)
T 2fo7_A           69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL  109 (136)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            45678888888889999999999999888888877666543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.29  E-value=0.0012  Score=55.22  Aligned_cols=71  Identities=18%  Similarity=0.175  Sum_probs=51.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..++..|+|.+|+..|++++.+......         ......++.|+|.++..+++|++|+..+.+++++.
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  119 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            345566788888888888888888888887543211         23346677788888888888888888888887663

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.29  E-value=8.9e-05  Score=71.03  Aligned_cols=74  Identities=12%  Similarity=0.037  Sum_probs=64.1

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+...|..+++.|+|.+|+..|+++++.-.               ....++.|+|.|+.+++++++|+..+.++++++|+
T Consensus       238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          238 LLNNLGHVCRKLKKYAEALDYHRQALVLIP---------------QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------------TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhCc---------------cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence            455778889999999999999999998732               13668899999999999999999999999999999


Q ss_pred             Cccceeeee
Q 011164          481 LLLPIFNIY  489 (492)
Q Consensus       481 n~KA~~r~~  489 (492)
                      +..+++++.
T Consensus       303 ~~~~~~~l~  311 (330)
T 3hym_B          303 DTFSVTMLG  311 (330)
T ss_dssp             CHHHHHHHH
T ss_pred             chHHHHHHH
Confidence            988776654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.28  E-value=0.00024  Score=57.65  Aligned_cols=34  Identities=18%  Similarity=0.085  Sum_probs=27.2

Q ss_pred             HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      ..++.++|.++.+++++++|+..+.++++++|++
T Consensus       103 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          103 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            4567788888888888888888888888887753

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.28  E-value=0.00037  Score=69.06  Aligned_cols=82  Identities=15%  Similarity=0.029  Sum_probs=58.8

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+...|..++..|+|.+|+..|++|++.......         ......++.|+|.||.++++|++|+.++.+|++
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34666678899999999999999999999987643211         234566777777777777777777777777777


Q ss_pred             -----cCCCCccceee
Q 011164          477 -----QKKFLLLPIFN  487 (492)
Q Consensus       477 -----~dp~n~KA~~r  487 (492)
                           .+|....++++
T Consensus       251 ~~~~~~~~~~~~~~~~  266 (378)
T 3q15_A          251 VSREKVPDLLPKVLFG  266 (378)
T ss_dssp             HHHHHCGGGHHHHHHH
T ss_pred             HHHhhCChhHHHHHHH
Confidence                 55544444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.27  E-value=0.0012  Score=55.24  Aligned_cols=76  Identities=16%  Similarity=0.099  Sum_probs=63.7

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHH
Q 011164          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQ  475 (492)
Q Consensus       396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al  475 (492)
                      ...+..+...|..++..++|.+|+..|++++........         ......++.|+|.++..+++|++|+..+.+++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345777889999999999999999999999998653211         34456789999999999999999999999999


Q ss_pred             hcCCC
Q 011164          476 QQKKF  480 (492)
Q Consensus       476 ~~dp~  480 (492)
                      ++.+.
T Consensus        77 ~~~~~   81 (164)
T 3ro3_A           77 LLARQ   81 (164)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.27  E-value=0.00016  Score=68.79  Aligned_cols=70  Identities=14%  Similarity=0.119  Sum_probs=60.5

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.|+|.+|+..|+++++.-               +....+++|+|.++.++++|++|+..+.++++++|
T Consensus        39 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  103 (281)
T 2c2l_A           39 VYYTNRALCYLKMQQPEQALADCRRALELD---------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            456678999999999999999999999862               22367899999999999999999999999999999


Q ss_pred             CCccc
Q 011164          480 FLLLP  484 (492)
Q Consensus       480 ~n~KA  484 (492)
                      ++..+
T Consensus       104 ~~~~~  108 (281)
T 2c2l_A          104 EQRLN  108 (281)
T ss_dssp             HTTCC
T ss_pred             cchhh
Confidence            77543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.26  E-value=0.0001  Score=75.96  Aligned_cols=74  Identities=20%  Similarity=0.078  Sum_probs=63.6

Q ss_pred             HHHHHHhhhHHHHcccH-HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          399 AGKKKEQGNTLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~-~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      +..+...|..++..++| .+|+..|+++++.-               +....+++|+|.||+++++|++|+..+.++|++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  166 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---------------PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH  166 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45667889999999999 99999999999872               223678999999999999999999999999999


Q ss_pred             CCCCccceeee
Q 011164          478 KKFLLLPIFNI  488 (492)
Q Consensus       478 dp~n~KA~~r~  488 (492)
                      +|+ ..+++++
T Consensus       167 ~p~-~~~~~~l  176 (474)
T 4abn_A          167 CKN-KVSLQNL  176 (474)
T ss_dssp             CCC-HHHHHHH
T ss_pred             CCC-HHHHHHH
Confidence            998 4666544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.26  E-value=0.00047  Score=68.33  Aligned_cols=72  Identities=15%  Similarity=0.149  Sum_probs=57.2

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+...|..++..|+|.+|+..|++|++.......         ......++.|+|.||.++++|++|+.++.+|++
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34556777889999999999999999999988654311         345567788888888888888888888888888


Q ss_pred             c
Q 011164          477 Q  477 (492)
Q Consensus       477 ~  477 (492)
                      +
T Consensus       253 ~  253 (383)
T 3ulq_A          253 V  253 (383)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.26  E-value=0.00024  Score=69.45  Aligned_cols=74  Identities=11%  Similarity=0.041  Sum_probs=55.8

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.|+|.+|+..|+++++.-..               ...+++|+|.++.++++|++|+..++++++++|
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  282 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN---------------DYLLWNKLGATLANGNQSEEAVAAYRRALELQP  282 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            44566788888899999999999999876221               245677788888888888888888888888887


Q ss_pred             CCccceeee
Q 011164          480 FLLLPIFNI  488 (492)
Q Consensus       480 ~n~KA~~r~  488 (492)
                      ++..+++++
T Consensus       283 ~~~~~~~~l  291 (368)
T 1fch_A          283 GYIRSRYNL  291 (368)
T ss_dssp             TCHHHHHHH
T ss_pred             CcHHHHHHH
Confidence            777666544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.25  E-value=0.0012  Score=63.39  Aligned_cols=76  Identities=13%  Similarity=0.041  Sum_probs=54.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.|+|.+|+..|+++++.......         ......+++|++.|++.++++.+|+.++++++ ++
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~  224 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN---------YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI  224 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC
Confidence            344556677777777888888888887776432211         12334578899999999999999999999999 98


Q ss_pred             CCCccc
Q 011164          479 KFLLLP  484 (492)
Q Consensus       479 p~n~KA  484 (492)
                      |.+..+
T Consensus       225 p~~~~~  230 (307)
T 2ifu_A          225 PGFSGS  230 (307)
T ss_dssp             TTSTTS
T ss_pred             CCCCCC
Confidence            876543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.25  E-value=0.00056  Score=65.79  Aligned_cols=74  Identities=12%  Similarity=0.060  Sum_probs=55.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+.+ |+|.+|+..|++|+.+......         ......+++|+|.++.++++|++|+..+.+++++.
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  185 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY  185 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4455566666666 7788888888887776432111         22446789999999999999999999999999987


Q ss_pred             CCCc
Q 011164          479 KFLL  482 (492)
Q Consensus       479 p~n~  482 (492)
                      |.+.
T Consensus       186 ~~~~  189 (307)
T 2ifu_A          186 KEME  189 (307)
T ss_dssp             HHTT
T ss_pred             HHcC
Confidence            6543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.25  E-value=0.00017  Score=75.97  Aligned_cols=87  Identities=8%  Similarity=-0.037  Sum_probs=60.7

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHHHH------HHHHHHHhHhHHHHHHHHh
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKKQ------AKALKVACNLNNAACKLKL  461 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~~------~~~~~~~l~~N~a~~~lk~  461 (492)
                      .+...|..+++.|+|++|+..|+++++.-....             ...++....      ..+....++.|++.++.++
T Consensus        59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           59 AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            455667777778888888888888877532110             000011111      1223356889999999999


Q ss_pred             ---cCHHHHHHHHHHHHhcCCCCccceee
Q 011164          462 ---KDYKQAEKLCTKVQQQKKFLLLPIFN  487 (492)
Q Consensus       462 ---~~~~~ai~~~~~al~~dp~n~KA~~r  487 (492)
                         +++++|+..+.++++.+|++..+++.
T Consensus       139 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~  167 (568)
T 2vsy_A          139 CDWRALDVLSAQVRAAVAQGVGAVEPFAF  167 (568)
T ss_dssp             TCCTTHHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred             hccccHHHHHHHHHHHHhcCCcccChHHH
Confidence               99999999999999999998877654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.23  E-value=0.00032  Score=60.64  Aligned_cols=87  Identities=9%  Similarity=-0.034  Sum_probs=46.8

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-------------CChHHHHHH------HHHHHHhHhHHHHHHHHh
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDEEKKQA------KALKVACNLNNAACKLKL  461 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-------------~~~~~~~~~------~~~~~~l~~N~a~~~lk~  461 (492)
                      .+...|..++..|++.+|+..|+++++.......             ..++....+      .+....++.++|.++.++
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~  123 (186)
T 3as5_A           44 VALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL  123 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc
Confidence            3455666666777777777777777665211000             000000000      111234566677777777


Q ss_pred             cCHHHHHHHHHHHHhcCCCCccceee
Q 011164          462 KDYKQAEKLCTKVQQQKKFLLLPIFN  487 (492)
Q Consensus       462 ~~~~~ai~~~~~al~~dp~n~KA~~r  487 (492)
                      ++|++|+..+.++++.+|.+..+++.
T Consensus       124 ~~~~~A~~~~~~~~~~~~~~~~~~~~  149 (186)
T 3as5_A          124 GRFDEAIDSFKIALGLRPNEGKVHRA  149 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCccchHHHHH
Confidence            77777777777777776666555543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.22  E-value=0.00057  Score=63.58  Aligned_cols=75  Identities=16%  Similarity=-0.026  Sum_probs=53.1

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      ...|..+++.|+|.+|+..|++++. .....           .....++.++|.|+.++++|++|+..+.++++++|++.
T Consensus        41 ~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~-----------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~  108 (272)
T 3u4t_A           41 NRRAVCYYELAKYDLAQKDIETYFS-KVNAT-----------KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL  108 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHT-TSCTT-----------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHh-ccCch-----------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Confidence            3445555566666666666666665 21111           12355689999999999999999999999999999998


Q ss_pred             cceeeee
Q 011164          483 LPIFNIY  489 (492)
Q Consensus       483 KA~~r~~  489 (492)
                      .+++++.
T Consensus       109 ~~~~~l~  115 (272)
T 3u4t_A          109 DMYGQIG  115 (272)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.21  E-value=0.0008  Score=64.18  Aligned_cols=74  Identities=11%  Similarity=-0.020  Sum_probs=57.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHh-cCHHHHHHHHHHHHhc
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~-~~~~~ai~~~~~al~~  477 (492)
                      +..+...|+.+.+.|+|.+|+..|++|+.+......         ......++.|+|.+|.++ ++|++|+.++++||++
T Consensus        77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~  147 (292)
T 1qqe_A           77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---------FRRGANFKFELGEILENDLHDYAKAIDCYELAGEW  147 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence            556667788888888888888888888877532111         123466899999999995 9999999999999999


Q ss_pred             CCCC
Q 011164          478 KKFL  481 (492)
Q Consensus       478 dp~n  481 (492)
                      .|.+
T Consensus       148 ~~~~  151 (292)
T 1qqe_A          148 YAQD  151 (292)
T ss_dssp             HHHT
T ss_pred             HHhC
Confidence            8754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.20  E-value=0.00055  Score=59.59  Aligned_cols=28  Identities=14%  Similarity=0.177  Sum_probs=20.2

Q ss_pred             HHHHhhhH-HHHcccH--HHHHHHHHHHHHH
Q 011164          401 KKKEQGNT-LFKAGKY--ARASKRYEKAVKY  428 (492)
Q Consensus       401 ~~K~~Gn~-~fk~~~~--~~A~~~Y~~al~~  428 (492)
                      .+...|.. +++.++|  .+|+..|+++++.
T Consensus        80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~  110 (177)
T 2e2e_A           80 LYAALATVLYYQASQHMTAQTRAMIDKALAL  110 (177)
T ss_dssp             HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence            34456666 5677887  8888888888876

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.20  E-value=0.0002  Score=62.75  Aligned_cols=67  Identities=18%  Similarity=0.188  Sum_probs=58.2

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+...|..+++.|+|.+|+..|+++++.               .+....++.|+|.+++++|+|++|+..+++++.++| 
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-   71 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDE---------------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-   71 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHH---------------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-
Confidence            4567889999999999999999999986               455578899999999999999999999999999888 


Q ss_pred             Ccc
Q 011164          481 LLL  483 (492)
Q Consensus       481 n~K  483 (492)
                      +..
T Consensus        72 ~~~   74 (176)
T 2r5s_A           72 DNS   74 (176)
T ss_dssp             CHH
T ss_pred             ChH
Confidence            653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.19  E-value=0.00035  Score=60.36  Aligned_cols=83  Identities=13%  Similarity=-0.039  Sum_probs=54.5

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHHHHH------HHHHHHhHhHHHHHHHHhc
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKKQA------KALKVACNLNNAACKLKLK  462 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~~~------~~~~~~l~~N~a~~~lk~~  462 (492)
                      +...|..+++.+++.+|+..|+++++......             ...++....+      .+....++.++|.++.+++
T Consensus        79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  158 (186)
T 3as5_A           79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG  158 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence            34556666677777777777777766532110             0000000111      1123568899999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCccc
Q 011164          463 DYKQAEKLCTKVQQQKKFLLLP  484 (492)
Q Consensus       463 ~~~~ai~~~~~al~~dp~n~KA  484 (492)
                      ++++|+..+.++++++|++..+
T Consensus       159 ~~~~A~~~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          159 RHEEALPHFKKANELDEGASVE  180 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHCCCGG
T ss_pred             CHHHHHHHHHHHHHcCCCchhh
Confidence            9999999999999999987654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.19  E-value=0.00059  Score=63.58  Aligned_cols=75  Identities=16%  Similarity=0.158  Sum_probs=63.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHH--------hcCHHHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--------LKDYKQAEKL  470 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk--------~~~~~~ai~~  470 (492)
                      ...+...|..+++.|+|.+|+..|+++++.....            +....++.++|.|+++        +++|.+|+..
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQID------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            4556788999999999999999999999874321            1235678999999999        9999999999


Q ss_pred             HHHHHhcCCCCccce
Q 011164          471 CTKVQQQKKFLLLPI  485 (492)
Q Consensus       471 ~~~al~~dp~n~KA~  485 (492)
                      ++++++.+|++..+.
T Consensus       120 ~~~~l~~~p~~~~~~  134 (261)
T 3qky_A          120 FQLFIDRYPNHELVD  134 (261)
T ss_dssp             HHHHHHHCTTCTTHH
T ss_pred             HHHHHHHCcCchhHH
Confidence            999999999987554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.16  E-value=0.00026  Score=64.55  Aligned_cols=87  Identities=18%  Similarity=0.073  Sum_probs=56.4

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHHHHH------HHHHHHhHhHHHHHHHHh
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKKQA------KALKVACNLNNAACKLKL  461 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~~~------~~~~~~l~~N~a~~~lk~  461 (492)
                      .+...|..+++.|++.+|+..|+++++......             ...++....+      .+....++.++|.|+.++
T Consensus       127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  206 (243)
T 2q7f_A          127 LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK  206 (243)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            455667777777778888877777776532110             0001111111      112245788888899999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCccceee
Q 011164          462 KDYKQAEKLCTKVQQQKKFLLLPIFN  487 (492)
Q Consensus       462 ~~~~~ai~~~~~al~~dp~n~KA~~r  487 (492)
                      +++++|+..++++++++|++..+++.
T Consensus       207 ~~~~~A~~~~~~~~~~~p~~~~~~~~  232 (243)
T 2q7f_A          207 ENREKALEMLDKAIDIQPDHMLALHA  232 (243)
T ss_dssp             TCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHccCcchHHHHHH
Confidence            99999999999999998888776654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.16  E-value=0.0011  Score=67.37  Aligned_cols=74  Identities=12%  Similarity=-0.067  Sum_probs=62.2

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+-..|..+..+|+|.+|+..|+++|...+......       .+.....++|+|..|..+|+|++|+..+.+||+
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            4566677889999999999999999999998865432222       445678899999999999999999999999998


Q ss_pred             c
Q 011164          477 Q  477 (492)
Q Consensus       477 ~  477 (492)
                      +
T Consensus       411 i  411 (433)
T 3qww_A          411 I  411 (433)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.14  E-value=0.00041  Score=63.22  Aligned_cols=89  Identities=16%  Similarity=0.004  Sum_probs=49.7

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHHHHH------HHHHHHhHhHHHHHHHH
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKKQA------KALKVACNLNNAACKLK  460 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~~~------~~~~~~l~~N~a~~~lk  460 (492)
                      ..+...|..+++.|++.+|+..|+++++......             ...++....+      .+....++.++|.++++
T Consensus        58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  137 (243)
T 2q7f_A           58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK  137 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3445566666677777777777777665422100             0000000000      11123456777777777


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164          461 LKDYKQAEKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       461 ~~~~~~ai~~~~~al~~dp~n~KA~~r~  488 (492)
                      +++|++|+..+.++++++|++..+++.+
T Consensus       138 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l  165 (243)
T 2q7f_A          138 LEQPKLALPYLQRAVELNENDTEARFQF  165 (243)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            7777777777777777777766655443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.13  E-value=0.00024  Score=65.42  Aligned_cols=71  Identities=13%  Similarity=-0.021  Sum_probs=41.8

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..++..|+|.+|+..|+++++....               ...++.++|.++.++++|++|+..+.++++++
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  101 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---------------SADAHAALAVVFQTEMEPKLADEEYRKALASD  101 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            566777888888888888888888888875211               12344444444444444444444444444444


Q ss_pred             CCCccc
Q 011164          479 KFLLLP  484 (492)
Q Consensus       479 p~n~KA  484 (492)
                      |.+..+
T Consensus       102 ~~~~~~  107 (252)
T 2ho1_A          102 SRNARV  107 (252)
T ss_dssp             TTCHHH
T ss_pred             cCcHHH
Confidence            444333

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.12  E-value=0.00046  Score=65.93  Aligned_cols=83  Identities=18%  Similarity=0.016  Sum_probs=59.5

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+...|..+++.|+|.+|+..|+++++..........      .+....++.|+|.|+.++++|++|+..++++++++|+
T Consensus       195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            3455666667777777777777777765432111000      0112468899999999999999999999999999999


Q ss_pred             Cccceeeee
Q 011164          481 LLLPIFNIY  489 (492)
Q Consensus       481 n~KA~~r~~  489 (492)
                      +..+++++.
T Consensus       269 ~~~~~~~la  277 (330)
T 3hym_B          269 NASTYSAIG  277 (330)
T ss_dssp             CSHHHHHHH
T ss_pred             chHHHHHHH
Confidence            988877653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.12  E-value=0.00036  Score=69.05  Aligned_cols=30  Identities=23%  Similarity=0.364  Sum_probs=25.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKY  428 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~  428 (492)
                      +..+...|+.+++.|+|.+|+..|+++++.
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   96 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRL   96 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            345677888999999999999999999876

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.10  E-value=0.0016  Score=67.04  Aligned_cols=78  Identities=13%  Similarity=0.061  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHH
Q 011164          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (492)
Q Consensus       393 ~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~  472 (492)
                      .+.++.+..+.+.+..+..+|+|.+|+..|+++|..........       .......++|+|.+|..+|+|++|+..+.
T Consensus       303 ~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~  375 (490)
T 3n71_A          303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYAR  375 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            45567777788888888899999999999999998765432221       34568889999999999999999999999


Q ss_pred             HHHhc
Q 011164          473 KVQQQ  477 (492)
Q Consensus       473 ~al~~  477 (492)
                      ++|++
T Consensus       376 ~aL~i  380 (490)
T 3n71_A          376 RMVDG  380 (490)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99976

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.10  E-value=0.0007  Score=62.89  Aligned_cols=68  Identities=15%  Similarity=-0.007  Sum_probs=59.5

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.|+|.+|+..|+++++....               ...++.++|.|++++++|++|+..+.++++++|
T Consensus        78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  142 (275)
T 1xnf_A           78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---------------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP  142 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc---------------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            34567888999999999999999999987321               257889999999999999999999999999999


Q ss_pred             CCc
Q 011164          480 FLL  482 (492)
Q Consensus       480 ~n~  482 (492)
                      ++.
T Consensus       143 ~~~  145 (275)
T 1xnf_A          143 NDP  145 (275)
T ss_dssp             TCH
T ss_pred             CCh
Confidence            886

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.05  E-value=0.00044  Score=65.96  Aligned_cols=87  Identities=10%  Similarity=-0.045  Sum_probs=46.5

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHHH------HHHHHHHHhHhHHHHHHHH
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKK------QAKALKVACNLNNAACKLK  460 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~------~~~~~~~~l~~N~a~~~lk  460 (492)
                      ..+...|..+++.|+|.+|+..|+++++......             ...++...      ...+....++.++|.++.+
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN  101 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence            3455677777788888888888888776522100             00000000      0011123455666666666


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCcccee
Q 011164          461 LKDYKQAEKLCTKVQQQKKFLLLPIF  486 (492)
Q Consensus       461 ~~~~~~ai~~~~~al~~dp~n~KA~~  486 (492)
                      +++|++|+..+.++++.+|++..++.
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~~~~~~~  127 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQYEQLGS  127 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTTTC--
T ss_pred             cCCHHHHHHHHHHHHHhCCccHHHHH
Confidence            66666666666666666666555443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.04  E-value=0.00053  Score=63.71  Aligned_cols=73  Identities=22%  Similarity=0.122  Sum_probs=60.6

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..++..|+|.+|+..|+++++........+       .+....++.|+|.|+..+++|++|+..+.+++++
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  114 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI  114 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            455677899999999999999999999998753221100       2456789999999999999999999999999988

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.04  E-value=0.00014  Score=58.57  Aligned_cols=58  Identities=5%  Similarity=-0.102  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       417 ~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      .|+..|+++++.-.               ....++.|+|.+++++++|++|+..+.++++++|++..+++++.
T Consensus         3 ~a~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   60 (115)
T 2kat_A            3 AITERLEAMLAQGT---------------DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG   60 (115)
T ss_dssp             CHHHHHHHHHTTTC---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC---------------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            57888999987522               12568999999999999999999999999999999988877653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.03  E-value=0.00041  Score=64.46  Aligned_cols=74  Identities=15%  Similarity=-0.035  Sum_probs=60.8

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+...|+.++..|+|.+|+..|+++++........+       .+....++.|+|.++.++++|++|+..+.++++
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  155 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE  155 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455677889999999999999999999998753221110       245678899999999999999999999999999


Q ss_pred             c
Q 011164          477 Q  477 (492)
Q Consensus       477 ~  477 (492)
                      +
T Consensus       156 ~  156 (283)
T 3edt_B          156 I  156 (283)
T ss_dssp             H
T ss_pred             H
Confidence            8

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.02  E-value=0.0025  Score=57.98  Aligned_cols=69  Identities=12%  Similarity=0.018  Sum_probs=58.6

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      ...|..++++|+|.+|+..|+++++....            .+....++.+++.|+.++|++++|+....+++...|++.
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDYPD------------TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTT------------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHCcC------------CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence            56788899999999999999999987432            223456889999999999999999999999999888765


Q ss_pred             c
Q 011164          483 L  483 (492)
Q Consensus       483 K  483 (492)
                      .
T Consensus       219 ~  219 (225)
T 2yhc_A          219 E  219 (225)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.98  E-value=0.00086  Score=60.01  Aligned_cols=67  Identities=13%  Similarity=0.072  Sum_probs=39.0

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCc
Q 011164          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK-FLL  482 (492)
Q Consensus       404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp-~n~  482 (492)
                      ..|..+++.|++.+|+..|+++++...               ....++.++|.+++++++|++|+..++++++++| .+.
T Consensus       118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  182 (225)
T 2vq2_A          118 NKGICSAKQGQFGLAEAYLKRSLAAQP---------------QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA  182 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHST---------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence            344444455555555555555554311               1244566777777777777777777777777777 665


Q ss_pred             cce
Q 011164          483 LPI  485 (492)
Q Consensus       483 KA~  485 (492)
                      .++
T Consensus       183 ~~~  185 (225)
T 2vq2_A          183 DDL  185 (225)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.98  E-value=0.00064  Score=62.51  Aligned_cols=71  Identities=17%  Similarity=0.119  Sum_probs=37.2

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      +...|..+++.|+|.+|+..|++++. ...            .+....++.++|.++++++++++|+..+.++++++|.+
T Consensus       108 ~~~la~~~~~~g~~~~A~~~~~~~~~-~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  174 (252)
T 2ho1_A          108 LNNYGGFLYEQKRYEEAYQRLLEASQ-DTL------------YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ  174 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTT-CTT------------CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHh-Ccc------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence            34556666777777777777777765 000            01123344445555555555555555555555555444


Q ss_pred             ccce
Q 011164          482 LLPI  485 (492)
Q Consensus       482 ~KA~  485 (492)
                      ..++
T Consensus       175 ~~~~  178 (252)
T 2ho1_A          175 PSVA  178 (252)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=96.98  E-value=0.00036  Score=69.06  Aligned_cols=89  Identities=15%  Similarity=0.015  Sum_probs=56.6

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHHHHH------HHHHHHhHhHHHHHHHHh
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKKQA------KALKVACNLNNAACKLKL  461 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~~~------~~~~~~l~~N~a~~~lk~  461 (492)
                      .+...|..+.+.|++.+|+..|+++++......             ...++....+      .+....++.|++.++.++
T Consensus       273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  352 (388)
T 1w3b_A          273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ  352 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            345566666677777777777777766422100             0000000001      112245788899999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          462 KDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       462 ~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      |++++|+..++++++++|++..++++..
T Consensus       353 g~~~~A~~~~~~a~~~~p~~~~a~~~lg  380 (388)
T 1w3b_A          353 GKLQEALMHYKEAIRISPTFADAYSNMG  380 (388)
T ss_dssp             TCCHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHhHH
Confidence            9999999999999999998888877643

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.97  E-value=0.0037  Score=55.03  Aligned_cols=71  Identities=7%  Similarity=0.065  Sum_probs=61.1

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..++..|+|.+|+..|++++........         ......++.|+|.++..+++|++|+..+.+++++
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3556778899999999999999999999997654321         4456788999999999999999999999999988

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.94  E-value=0.0022  Score=66.09  Aligned_cols=74  Identities=9%  Similarity=-0.084  Sum_probs=62.1

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+-..|..+..+|+|.+|+..|+++|..........       .+.....++|+|..|..+|+|++|+..+.+||+
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~  421 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA  421 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4666777888899999999999999999998865432222       445688899999999999999999999999997


Q ss_pred             c
Q 011164          477 Q  477 (492)
Q Consensus       477 ~  477 (492)
                      +
T Consensus       422 i  422 (490)
T 3n71_A          422 I  422 (490)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.90  E-value=0.0021  Score=61.12  Aligned_cols=73  Identities=16%  Similarity=0.100  Sum_probs=60.1

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcC-HHHHHHHHHHHH
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-YKQAEKLCTKVQ  475 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~-~~~ai~~~~~al  475 (492)
                      ..+..+...|..+++.|+|.+|+..|++|+.+......         ......+|.|+|.|+.++|+ |++|+.++.+|+
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS---------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB---------CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc---------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            44557788999999999999999999999987543211         12347899999999999995 799999999999


Q ss_pred             hcC
Q 011164          476 QQK  478 (492)
Q Consensus       476 ~~d  478 (492)
                      .+-
T Consensus       265 ~i~  267 (293)
T 3u3w_A          265 FFF  267 (293)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            773

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.89  E-value=0.00088  Score=63.82  Aligned_cols=73  Identities=11%  Similarity=0.005  Sum_probs=53.3

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.|++.+|+..|+++++....               ...++.++|.++.++++|++|+..+.++++++|
T Consensus       173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  237 (327)
T 3cv0_A          173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPD---------------DAQLWNKLGATLANGNRPQEALDAYNRALDINP  237 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            34566788888999999999999999976321               134567777777777777777777777777777


Q ss_pred             CCccceee
Q 011164          480 FLLLPIFN  487 (492)
Q Consensus       480 ~n~KA~~r  487 (492)
                      ++..+++.
T Consensus       238 ~~~~~~~~  245 (327)
T 3cv0_A          238 GYVRVMYN  245 (327)
T ss_dssp             TCHHHHHH
T ss_pred             CCHHHHHH
Confidence            76665544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=96.87  E-value=0.00045  Score=70.16  Aligned_cols=74  Identities=15%  Similarity=0.005  Sum_probs=58.2

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+...|..++.+|+|++|+..|++|++++......      .........|.|+|.+|..+|+|++|+.++++++++.+.
T Consensus        53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~------~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD------QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG------GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            34567888999999999999999999986432110      001223668999999999999999999999999988653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.86  E-value=0.0027  Score=64.31  Aligned_cols=76  Identities=9%  Similarity=-0.098  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (492)
Q Consensus       395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a  474 (492)
                      ....+..+-..|..+..+|+|.+|+..|+++|..........       .+.....++|+|..|..+|+|++|+..+.+|
T Consensus       325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            345677778889999999999999999999998865432222       4556888999999999999999999999999


Q ss_pred             Hhc
Q 011164          475 QQQ  477 (492)
Q Consensus       475 l~~  477 (492)
                      |++
T Consensus       398 l~i  400 (429)
T 3qwp_A          398 FDI  400 (429)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            976

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.86  E-value=0.001  Score=66.01  Aligned_cols=33  Identities=15%  Similarity=0.180  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKY  428 (492)
Q Consensus       396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~  428 (492)
                      ...+..+...|..++..|+|.+|+..|+++++.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~   77 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQA   77 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence            456777888999999999999999999999986

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.85  E-value=0.003  Score=62.42  Aligned_cols=77  Identities=14%  Similarity=0.028  Sum_probs=59.3

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+...|..++..|+|.+|+..|++|+++......        .......+++|+|.|+..+++|++|+.++.+|++
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  212 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--------YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS  212 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--------THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--------chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34556667777777888888888888888877654321        1334578999999999999999999999999999


Q ss_pred             cCCCC
Q 011164          477 QKKFL  481 (492)
Q Consensus       477 ~dp~n  481 (492)
                      +.+.+
T Consensus       213 ~~~~~  217 (383)
T 3ulq_A          213 MAEAE  217 (383)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            86543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.83  E-value=0.0038  Score=63.27  Aligned_cols=77  Identities=10%  Similarity=-0.015  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (492)
Q Consensus       394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~  473 (492)
                      +.+..+....+.+...-+.|+|.+|+..|+++|...+......       .......++|+|.+|..+|+|++|+..+.+
T Consensus       293 ~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~  365 (433)
T 3qww_A          293 DMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQK  365 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            3444555666666666677899999999999998765432221       445678899999999999999999999999


Q ss_pred             HHhc
Q 011164          474 VQQQ  477 (492)
Q Consensus       474 al~~  477 (492)
                      +|++
T Consensus       366 aL~i  369 (433)
T 3qww_A          366 IIKP  369 (433)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9976

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.80  E-value=0.00039  Score=66.34  Aligned_cols=67  Identities=16%  Similarity=0.092  Sum_probs=51.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      ...+...|..++++|++.+|+..|++++..-.               -...++.|+|.+++++|++++|+..+.+++..+
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P---------------~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~  181 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSN---------------QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD  181 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---------------SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---------------cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence            34577899999999999999999999998732               235667777777777777777776666666555


Q ss_pred             CC
Q 011164          479 KF  480 (492)
Q Consensus       479 p~  480 (492)
                      |+
T Consensus       182 p~  183 (287)
T 3qou_A          182 QD  183 (287)
T ss_dssp             CS
T ss_pred             cc
Confidence            53

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.79  E-value=0.0028  Score=49.33  Aligned_cols=67  Identities=13%  Similarity=0.020  Sum_probs=55.7

Q ss_pred             HHHHHhhhHHHHccc---HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          400 GKKKEQGNTLFKAGK---YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~---~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+-..|+.+|-.++   ..+|...+++||+.               ++..+..+..++..+++.++|++|+....++|+
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---------------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---------------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            345567777764444   79999999999987               444578888899999999999999999999999


Q ss_pred             cCCCC
Q 011164          477 QKKFL  481 (492)
Q Consensus       477 ~dp~n  481 (492)
                      .+|.+
T Consensus        72 ~~p~~   76 (93)
T 3bee_A           72 SNDPN   76 (93)
T ss_dssp             CCCTT
T ss_pred             hCCCC
Confidence            99973

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.79  E-value=0.00094  Score=69.98  Aligned_cols=76  Identities=12%  Similarity=-0.067  Sum_probs=64.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.|++++|+..|+++++.-.               ....++.+++.+|.++|+|++|+..++++++++
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  580 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLST---------------NDANVHTAIALVYLHKKIPGLAITHLHESLAIS  580 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---------------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            34556778888999999999999999998632               125789999999999999999999999999999


Q ss_pred             CCCccceeeee
Q 011164          479 KFLLLPIFNIY  489 (492)
Q Consensus       479 p~n~KA~~r~~  489 (492)
                      |++..+++...
T Consensus       581 p~~~~~~~~l~  591 (597)
T 2xpi_A          581 PNEIMASDLLK  591 (597)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCChHHHHHHH
Confidence            99988776543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.78  E-value=0.0065  Score=53.39  Aligned_cols=72  Identities=15%  Similarity=0.157  Sum_probs=58.8

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..++..|+|.+|+..|++++........         ......++.|+|.++.++|+|++|+..+.+++++
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD---------QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc---------hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            3445667788899999999999999999987543211         2345677899999999999999999999999987


Q ss_pred             C
Q 011164          478 K  478 (492)
Q Consensus       478 d  478 (492)
                      -
T Consensus       177 ~  177 (203)
T 3gw4_A          177 F  177 (203)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=96.77  E-value=0.00097  Score=67.67  Aligned_cols=80  Identities=11%  Similarity=-0.025  Sum_probs=60.2

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc--CHHHHHHHHHHHHhcCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~--~~~~ai~~~~~al~~dp  479 (492)
                      +...|..++..|+|.+|+..|++++.+........       ......+++|++.++++++  +|++|+.++.+||+++|
T Consensus        97 ~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p  169 (472)
T 4g1t_A           97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY-------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP  169 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS-------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc-------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence            44678888999999999999999998765432111       0012456788888888765  69999999999999999


Q ss_pred             CCccceeee
Q 011164          480 FLLLPIFNI  488 (492)
Q Consensus       480 ~n~KA~~r~  488 (492)
                      +|+.+++.+
T Consensus       170 ~~~~~~~~~  178 (472)
T 4g1t_A          170 KNPEFTSGL  178 (472)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            998776543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.72  E-value=0.0045  Score=58.78  Aligned_cols=70  Identities=17%  Similarity=0.126  Sum_probs=56.9

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHH-HHHHHHHHhcC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA-EKLCTKVQQQK  478 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~a-i~~~~~al~~d  478 (492)
                      ..+...|..+++.|+|.+|+..|++|+........         ......+|.|+|.||.++|++++| ..++++|+.+.
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS---------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB---------CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            46678899999999999999999999987432111         113477899999999999999999 77799998763

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.71  E-value=0.0067  Score=59.81  Aligned_cols=74  Identities=8%  Similarity=-0.007  Sum_probs=52.1

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..++..|++..|+..|++|+.+.......        ......+++|+|.|+..+++|++|+..+.+|+++
T Consensus       140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~  211 (378)
T 3q15_A          140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL  211 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            34445555666666666666666666666654332110        2346788999999999999999999999999987


Q ss_pred             CC
Q 011164          478 KK  479 (492)
Q Consensus       478 dp  479 (492)
                      .+
T Consensus       212 ~~  213 (378)
T 3q15_A          212 AM  213 (378)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.63  E-value=0.00076  Score=53.00  Aligned_cols=43  Identities=12%  Similarity=0.025  Sum_probs=39.3

Q ss_pred             HHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          447 KVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       447 ~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      ...++.|+|.+++++++|++|+..++++++++|++..+++++.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg   48 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLG   48 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            3668899999999999999999999999999999999888754

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.60  E-value=0.0024  Score=60.98  Aligned_cols=68  Identities=9%  Similarity=0.090  Sum_probs=54.5

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHH-HHHHHHHHHhcCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ-AEKLCTKVQQQKKF  480 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~-ai~~~~~al~~dp~  480 (492)
                      +...|..+.+.|+|.+|...|++++..               .+....++.|++.++..+|++.+ +....+++++++|+
T Consensus       203 ~~~la~~~~~~g~~~eA~~~l~~al~~---------------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          203 LNGQAACHMAQGRWEAAEGVLQEALDK---------------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence            445677778888888888888888876               22346679999999999999987 56788999999999


Q ss_pred             Cccc
Q 011164          481 LLLP  484 (492)
Q Consensus       481 n~KA  484 (492)
                      |+.+
T Consensus       268 ~~~~  271 (291)
T 3mkr_A          268 HPFI  271 (291)
T ss_dssp             CHHH
T ss_pred             ChHH
Confidence            8643

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.60  E-value=0.0024  Score=52.67  Aligned_cols=40  Identities=13%  Similarity=0.082  Sum_probs=36.6

Q ss_pred             HHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI  485 (492)
Q Consensus       446 ~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~  485 (492)
                      .+-.|++.+|.++.|+|+|.+|.++|+.+|+++|+|..|.
T Consensus        76 ~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           76 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            4577888999999999999999999999999999998764

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.56  E-value=0.0021  Score=52.84  Aligned_cols=40  Identities=18%  Similarity=0.075  Sum_probs=36.7

Q ss_pred             HHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI  485 (492)
Q Consensus       446 ~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~  485 (492)
                      .+-.+++.+|..++|+++|.+|+++|+.+|+++|+|..|.
T Consensus        72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~  111 (126)
T 1nzn_A           72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  111 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            4667889999999999999999999999999999998764

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.56  E-value=0.0071  Score=61.20  Aligned_cols=74  Identities=7%  Similarity=-0.085  Sum_probs=59.1

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+...-..+.++|+|++|+..|+++|..........       .......++|+|.+|..+|+|++|+..|.++|+
T Consensus       285 ~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          285 KEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            3455555666778889999999999999997654332221       345688999999999999999999999999997


Q ss_pred             c
Q 011164          477 Q  477 (492)
Q Consensus       477 ~  477 (492)
                      +
T Consensus       358 i  358 (429)
T 3qwp_A          358 P  358 (429)
T ss_dssp             H
T ss_pred             h
Confidence            6

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.55  E-value=0.0086  Score=56.63  Aligned_cols=83  Identities=16%  Similarity=0.123  Sum_probs=49.1

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC---------------CC--hHHHH------------HHHHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS---------------FG--DEEKK------------QAKALKVA  449 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~---------------~~--~~~~~------------~~~~~~~~  449 (492)
                      +..+...|..+++.|+|.+|+..|+++++.-.....               ..  ++...            .-......
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            445666777888888888888888888775221100               00  00000            00334455


Q ss_pred             hHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          450 CNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       450 l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      ++.++|.++..+++|++|+..+.+++++.+..
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  116 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISREL  116 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence            66777777777777777777777777776643

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.46  E-value=0.0028  Score=62.87  Aligned_cols=71  Identities=13%  Similarity=0.154  Sum_probs=60.8

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..++..|+|.+|+..|++++........         ......++.++|.++..+++|++|+..+.+++++
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  155 (411)
T 4a1s_A           85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND---------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL  155 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3456778899999999999999999999987643211         4566789999999999999999999999999988

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.43  E-value=0.0024  Score=65.65  Aligned_cols=71  Identities=15%  Similarity=0.123  Sum_probs=42.5

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.|+|.+|+..|+++++.....               ..++.++|.++.++++|++|+..++++++++|
T Consensus       311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  375 (537)
T 3fp2_A          311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN---------------VYPYIQLACLLYKQGKFTESEAFFNETKLKFP  375 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            345667777888888888888888888753211               23444555555555555555555555555555


Q ss_pred             CCccce
Q 011164          480 FLLLPI  485 (492)
Q Consensus       480 ~n~KA~  485 (492)
                      ++..++
T Consensus       376 ~~~~~~  381 (537)
T 3fp2_A          376 TLPEVP  381 (537)
T ss_dssp             TCTHHH
T ss_pred             CChHHH
Confidence            554443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.43  E-value=0.0031  Score=59.40  Aligned_cols=73  Identities=16%  Similarity=0.035  Sum_probs=59.2

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..++..|+|.+|+..|+++++.........       ......++.|+|.++.++++|++|+..+.+++++
T Consensus       110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-------HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345567788889999999999999999998753210000       2456788999999999999999999999999998

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.38  E-value=0.0084  Score=56.36  Aligned_cols=75  Identities=13%  Similarity=0.018  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHH
Q 011164          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQ  475 (492)
Q Consensus       396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al  475 (492)
                      ...+..+...|..++..|+|.+|+..|+++++........       -......++.++|.++..+++|++|+..+.+++
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al   96 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH-------DHPDVATMLNILALVYRDQNKYKDAANLLNDAL   96 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCS-------SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3556778899999999999999999999999875432100       134567889999999999999999999999999


Q ss_pred             hc
Q 011164          476 QQ  477 (492)
Q Consensus       476 ~~  477 (492)
                      ++
T Consensus        97 ~~   98 (311)
T 3nf1_A           97 AI   98 (311)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.34  E-value=0.0095  Score=58.42  Aligned_cols=73  Identities=14%  Similarity=0.109  Sum_probs=57.8

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..++..|+|.+|+..|++++........         ......++.++|.++..+|+|++|+..+.+++++.
T Consensus        47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  117 (406)
T 3sf4_A           47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD---------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS  117 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            455667788888888888888888888876543211         34567889999999999999999999999999987


Q ss_pred             CC
Q 011164          479 KF  480 (492)
Q Consensus       479 p~  480 (492)
                      +.
T Consensus       118 ~~  119 (406)
T 3sf4_A          118 RE  119 (406)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.33  E-value=0.011  Score=57.83  Aligned_cols=68  Identities=19%  Similarity=0.106  Sum_probs=58.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      +..+...|..+++.|+|.+|+..|+++++.....           ......++.++|.++..+++|.+|+..+.+++++
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   76 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTED-----------LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   76 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccc-----------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4566788999999999999999999999873211           3345778999999999999999999999999887

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.29  E-value=0.017  Score=54.59  Aligned_cols=73  Identities=15%  Similarity=0.003  Sum_probs=51.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.|+|.+|+..|++++........         ......++.++|.++.++|++++|+..+++++++.
T Consensus       263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD---------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            344556666777777777777777777766432111         33446688899999999999999999999999886


Q ss_pred             CC
Q 011164          479 KF  480 (492)
Q Consensus       479 p~  480 (492)
                      +.
T Consensus       334 ~~  335 (338)
T 3ro2_A          334 RE  335 (338)
T ss_dssp             --
T ss_pred             Hh
Confidence            54

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.22  E-value=0.018  Score=49.41  Aligned_cols=76  Identities=17%  Similarity=0.175  Sum_probs=51.3

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh--------HHHH--HHHHHHHHhHhHHHHHHHHhcCHHHH
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD--------EEKK--QAKALKVACNLNNAACKLKLKDYKQA  467 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~--------~~~~--~~~~~~~~l~~N~a~~~lk~~~~~~a  467 (492)
                      .+..+--.|+.+|.+++|.+|...|++||.+.+.......        .-..  .-..-...+.+.+|.||++++++.+|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            3455677899999999999999999999987653211100        0000  00011235667799999999999999


Q ss_pred             HHHHHH
Q 011164          468 EKLCTK  473 (492)
Q Consensus       468 i~~~~~  473 (492)
                      |.....
T Consensus       142 i~~Le~  147 (167)
T 3ffl_A          142 IAILDG  147 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            987543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.0073  Score=61.46  Aligned_cols=70  Identities=11%  Similarity=-0.008  Sum_probs=60.4

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ..+...|..+++.|+|.+|+..|+++++.-.               ....++.++|.|+.++++|++|+..+++++.++|
T Consensus        40 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  104 (514)
T 2gw1_A           40 VFYSNLSACYVSVGDLKKVVEMSTKALELKP---------------DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD  104 (514)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHhccCh---------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            3566789999999999999999999998622               2367899999999999999999999999999998


Q ss_pred             CCccc
Q 011164          480 FLLLP  484 (492)
Q Consensus       480 ~n~KA  484 (492)
                      .+...
T Consensus       105 ~~~~~  109 (514)
T 2gw1_A          105 FNDAS  109 (514)
T ss_dssp             CCGGG
T ss_pred             Cccch
Confidence            66544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.12  E-value=0.0042  Score=51.89  Aligned_cols=39  Identities=13%  Similarity=0.103  Sum_probs=35.7

Q ss_pred             HHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164          447 KVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI  485 (492)
Q Consensus       447 ~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~  485 (492)
                      +-.|++.+|.++.|+++|.+|.++|+..|+++|+|..|.
T Consensus        76 ~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           76 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            566888999999999999999999999999999997663

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.05  E-value=0.0038  Score=59.36  Aligned_cols=89  Identities=9%  Similarity=-0.115  Sum_probs=62.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc-------------CCCChHHHH------HHHHHHHHhHhHHHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------------TSFGDEEKK------QAKALKVACNLNNAACKL  459 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-------------~~~~~~~~~------~~~~~~~~l~~N~a~~~l  459 (492)
                      +..+...|..+.+.|++.+|+..|++++..-...             ....++...      ...+-...++.|+|.+++
T Consensus       151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~  230 (287)
T 3qou_A          151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH  230 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            4566778888888999999999888876531100             000001111      112334678999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCC--ccceee
Q 011164          460 KLKDYKQAEKLCTKVQQQKKFL--LLPIFN  487 (492)
Q Consensus       460 k~~~~~~ai~~~~~al~~dp~n--~KA~~r  487 (492)
                      ++|++++|+..+.++|+.+|++  ..|+.+
T Consensus       231 ~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~  260 (287)
T 3qou_A          231 QVGRNEEALELLFGHLRXDLTAADGQTRXT  260 (287)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred             HcccHHHHHHHHHHHHhcccccccchHHHH
Confidence            9999999999999999999988  555443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.92  E-value=0.0089  Score=55.70  Aligned_cols=86  Identities=14%  Similarity=0.023  Sum_probs=46.2

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc----------cC----CCChHH-H----HHHHHHHHHhHhHHHHHHHH
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEY----------DT----SFGDEE-K----KQAKALKVACNLNNAACKLK  460 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~----------~~----~~~~~~-~----~~~~~~~~~l~~N~a~~~lk  460 (492)
                      ..+...|..+++.+++.+|+..|+++++.-..          ..    ..+.++ .    ..+..-...++.|++.++..
T Consensus         7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~   86 (273)
T 1ouv_A            7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYS   86 (273)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence            34556777777777777887777777762000          00    000000 0    00011134556667777777


Q ss_pred             ----hcCHHHHHHHHHHHHhcCCCCccceee
Q 011164          461 ----LKDYKQAEKLCTKVQQQKKFLLLPIFN  487 (492)
Q Consensus       461 ----~~~~~~ai~~~~~al~~dp~n~KA~~r  487 (492)
                          .+++++|+..+.++++.+  +..++++
T Consensus        87 g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~  115 (273)
T 1ouv_A           87 GQGVSQNTNKALQYYSKACDLK--YAEGCAS  115 (273)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             CCCcccCHHHHHHHHHHHHHcC--CccHHHH
Confidence                677777777777776653  4455444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=95.86  E-value=0.0099  Score=56.85  Aligned_cols=54  Identities=11%  Similarity=0.128  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       415 ~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      +.+|+..|++|++.+..              ....++.|++..+.+++++++|+..++++|+++|.+.
T Consensus        80 ~~~A~~~~~rAl~~~~p--------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  133 (308)
T 2ond_A           80 SDEAANIYERAISTLLK--------------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP  133 (308)
T ss_dssp             HHHHHHHHHHHHTTTTT--------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT
T ss_pred             hHHHHHHHHHHHHHhCc--------------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc
Confidence            48999999999984321              1133445555555555555555555555555555444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.76  E-value=0.0033  Score=49.41  Aligned_cols=42  Identities=10%  Similarity=-0.030  Sum_probs=38.3

Q ss_pred             HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      ...+.++|.+++++++|++|+..++++++++|++..+++++.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg   45 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKA   45 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            567889999999999999999999999999999998887654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=95.76  E-value=0.0052  Score=53.42  Aligned_cols=89  Identities=12%  Similarity=-0.019  Sum_probs=62.1

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC--------------CChHHHHH------HHHHHHHhHhHHHHH
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS--------------FGDEEKKQ------AKALKVACNLNNAAC  457 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~--------------~~~~~~~~------~~~~~~~l~~N~a~~  457 (492)
                      ....+...|..+++.|++.+|+..|++++..-. ...              ...+....      ..+....++.|+|.+
T Consensus        39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~  117 (176)
T 2r5s_A           39 RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQ  117 (176)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            345567788888999999999999888765421 000              00000111      122236789999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCcc--ceee
Q 011164          458 KLKLKDYKQAEKLCTKVQQQKKFLLL--PIFN  487 (492)
Q Consensus       458 ~lk~~~~~~ai~~~~~al~~dp~n~K--A~~r  487 (492)
                      +.++|++++|+..+.++++++|++..  ++++
T Consensus       118 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~  149 (176)
T 2r5s_A          118 YNQVGRDEEALELLWNILKVNLGAQDGEVKKT  149 (176)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHhCcccChHHHHHH
Confidence            99999999999999999999997643  5544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=95.72  E-value=0.0099  Score=62.03  Aligned_cols=86  Identities=10%  Similarity=-0.066  Sum_probs=46.1

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHHHHHHH------HHHHhHhHHHHHHHHh
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKKQAKA------LKVACNLNNAACKLKL  461 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~~~~~------~~~~l~~N~a~~~lk~  461 (492)
                      .+...|+.+++.|++.+|+..|+++++.-....             ...++....++.      ....++++++.++.+.
T Consensus       375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  454 (597)
T 2xpi_A          375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL  454 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence            445567788888899999988888887421100             000000011111      1123455556666666


Q ss_pred             cCHHHHHHHHHHHHhcCCCCcccee
Q 011164          462 KDYKQAEKLCTKVQQQKKFLLLPIF  486 (492)
Q Consensus       462 ~~~~~ai~~~~~al~~dp~n~KA~~  486 (492)
                      |++++|+..++++++++|++..+++
T Consensus       455 g~~~~A~~~~~~~~~~~~~~~~~~~  479 (597)
T 2xpi_A          455 GNILLANEYLQSSYALFQYDPLLLN  479 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHH
Confidence            6666666666666666555554443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.62  E-value=0.006  Score=64.12  Aligned_cols=73  Identities=7%  Similarity=-0.038  Sum_probs=49.0

Q ss_pred             HHHHhhhHHHHccc----------HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc--CHHHHH
Q 011164          401 KKKEQGNTLFKAGK----------YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAE  468 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~----------~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~--~~~~ai  468 (492)
                      .+.-+|..+.+.++          |++|+..|.++++.               .+....+|++|+.+..+++  +|++++
T Consensus        65 aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---------------~pK~y~aW~hR~w~l~~l~~~~~~~el  129 (567)
T 1dce_A           65 LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---------------NPKSYGTWHHRCWLLSRLPEPNWAREL  129 (567)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcccccHHHHH
Confidence            44455666666666          89999999999875               2233566667777777776  557777


Q ss_pred             HHHHHHHhcCCCCccceeee
Q 011164          469 KLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       469 ~~~~~al~~dp~n~KA~~r~  488 (492)
                      ..|+++|++||.|..||+.+
T Consensus       130 ~~~~k~l~~d~~N~~aW~~R  149 (567)
T 1dce_A          130 ELCARFLEADERNFHCWDYR  149 (567)
T ss_dssp             HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHhhccccccHHHHH
Confidence            77777777777766666543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=95.52  E-value=0.011  Score=56.54  Aligned_cols=69  Identities=9%  Similarity=0.048  Sum_probs=44.4

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      +...|+-+.+.|++.+|...|+++++.-...   .           ..++.|++.++.+++++++|+..++++++++|.+
T Consensus       102 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~  167 (308)
T 2ond_A          102 YFAYADYEESRMKYEKVHSIYNRLLAIEDID---P-----------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC---T-----------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhccccC---c-----------cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence            3456666677899999999999999742110   0           0156666666666666666666666666666655


Q ss_pred             ccc
Q 011164          482 LLP  484 (492)
Q Consensus       482 ~KA  484 (492)
                      ..+
T Consensus       168 ~~~  170 (308)
T 2ond_A          168 HHV  170 (308)
T ss_dssp             THH
T ss_pred             HHH
Confidence            443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.36  E-value=0.021  Score=53.10  Aligned_cols=40  Identities=13%  Similarity=-0.078  Sum_probs=34.0

Q ss_pred             HHHhHhHHHHHHHH----hcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164          447 KVACNLNNAACKLK----LKDYKQAEKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       447 ~~~l~~N~a~~~lk----~~~~~~ai~~~~~al~~dp~n~KA~~r~  488 (492)
                      ...++.|++.+|.+    .+++++|+..+.++++++  +..+++++
T Consensus       109 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l  152 (273)
T 1ouv_A          109 YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTIL  152 (273)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHH
Confidence            35689999999999    999999999999999986  45666554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.35  E-value=0.017  Score=57.58  Aligned_cols=83  Identities=10%  Similarity=0.071  Sum_probs=60.2

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh--HHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD--EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~--~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      .-++|..++++|+|.+|++.|.++++..........  ............++.|++.+|.++|+|++|+....+++.+.+
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            346788899999999999999999986543221100  000112234456789999999999999999999999998876


Q ss_pred             CCccc
Q 011164          480 FLLLP  484 (492)
Q Consensus       480 ~n~KA  484 (492)
                      ...++
T Consensus        87 ~~~~~   91 (434)
T 4b4t_Q           87 QFAKS   91 (434)
T ss_dssp             TSCHH
T ss_pred             Hccch
Confidence            55443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.34  E-value=0.018  Score=51.86  Aligned_cols=73  Identities=12%  Similarity=-0.033  Sum_probs=51.2

Q ss_pred             HHHhhhHHHH----cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHH----hcCHHHHHHHHHH
Q 011164          402 KKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTK  473 (492)
Q Consensus       402 ~K~~Gn~~fk----~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk----~~~~~~ai~~~~~  473 (492)
                      ....|.-++.    .+++.+|+..|++|++.-..             .-...+++|++.+|..    .+++++|+..+.+
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~-------------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSES-------------DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS-------------HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC-------------cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            3344555554    66777777777777754110             0236788899999999    8899999999999


Q ss_pred             HHhcCCCCccceeee
Q 011164          474 VQQQKKFLLLPIFNI  488 (492)
Q Consensus       474 al~~dp~n~KA~~r~  488 (492)
                      ++++ +++..|+|++
T Consensus       155 A~~~-~~~~~a~~~L  168 (212)
T 3rjv_A          155 SSSL-SRTGYAEYWA  168 (212)
T ss_dssp             HHHT-SCTTHHHHHH
T ss_pred             HHHc-CCCHHHHHHH
Confidence            9988 5666676654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.31  E-value=0.014  Score=61.37  Aligned_cols=82  Identities=7%  Similarity=-0.103  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHcccH-HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcC--------
Q 011164          393 EEKIEAAGKKKEQGNTLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD--------  463 (492)
Q Consensus       393 ~e~l~~a~~~K~~Gn~~fk~~~~-~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~--------  463 (492)
                      ..+++.-..+....-.+.+.+.| ++|+..|.+++..               .+....++++|+.+..++++        
T Consensus        22 ~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~---------------nP~~~taW~~R~~~l~~l~~~~~~~~~~   86 (567)
T 1dce_A           22 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGA---------------NPDFATLWNCRREVLQHLETEKSPEESA   86 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---------------CchhHHHHHHHHHHHHhcccccchhhhh
Confidence            34444444444555555555555 6789999999987               44458899999999999998        


Q ss_pred             --HHHHHHHHHHHHhcCCCCccceeeee
Q 011164          464 --YKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       464 --~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                        |++++..++++|+.+|+|..||+.+.
T Consensus        87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~  114 (567)
T 1dce_A           87 ALVKAELGFLESCLRVNPKSYGTWHHRC  114 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence              99999999999999999999987654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=95.30  E-value=0.011  Score=44.33  Aligned_cols=43  Identities=16%  Similarity=0.079  Sum_probs=38.4

Q ss_pred             HHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          447 KVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       447 ~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      ....+.++|.+++++++|++|+..+.++++++|++..+++++.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~   50 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG   50 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            4567899999999999999999999999999999988877653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.21  E-value=0.061  Score=52.39  Aligned_cols=72  Identities=17%  Similarity=0.005  Sum_probs=51.4

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      +...|..++..|+|.+|+..|++++..........       ......++.|++.++..+|+|++|+..+.+++++.+.
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ-------LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT-------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            45567778888999999999999988754321110       0234566778888888888888888888888877664

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=95.16  E-value=0.036  Score=52.37  Aligned_cols=69  Identities=13%  Similarity=-0.020  Sum_probs=47.6

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHH-HHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKAL-KVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~-~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .-..|..+-+.|++.+|+..|++++.- ..            .+. ......|++.|+.++|+.++|+..+++++..+|+
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g-~~------------~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDS-PA------------GEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTS-TT------------TTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcC-CC------------CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            344566666667777777777766631 00            001 4567788999999999999999999999999887


Q ss_pred             Cccc
Q 011164          481 LLLP  484 (492)
Q Consensus       481 n~KA  484 (492)
                       .++
T Consensus       241 -~~~  243 (282)
T 4f3v_A          241 -PKV  243 (282)
T ss_dssp             -HHH
T ss_pred             -HHH
Confidence             543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.14  E-value=0.022  Score=51.28  Aligned_cols=90  Identities=13%  Similarity=0.045  Sum_probs=60.1

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc---------cCCC----ChHHH-----HHHHHHHHHhHhHHHHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY---------DTSF----GDEEK-----KQAKALKVACNLNNAACKLK  460 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~---------~~~~----~~~~~-----~~~~~~~~~l~~N~a~~~lk  460 (492)
                      +..+...|..++..+++.+|+..|+++++.-..         ....    +.+.-     ...+.-....++|++.+|..
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~   97 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN   97 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            445667888888899999999999998864210         0000    11110     12223345577888888888


Q ss_pred             ----hcCHHHHHHHHHHHHhcCC--CCccceeee
Q 011164          461 ----LKDYKQAEKLCTKVQQQKK--FLLLPIFNI  488 (492)
Q Consensus       461 ----~~~~~~ai~~~~~al~~dp--~n~KA~~r~  488 (492)
                          .+++.+|+..+.++++.++  +++.|++++
T Consensus        98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~L  131 (212)
T 3rjv_A           98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLL  131 (212)
T ss_dssp             GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHH
T ss_pred             CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHH
Confidence                8888888888888888876  347777654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=95.01  E-value=0.016  Score=54.88  Aligned_cols=78  Identities=13%  Similarity=0.082  Sum_probs=58.9

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC--
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK--  478 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d--  478 (492)
                      .....|..+++.++|.+|+..++++++.-.             ......++.|++.++..+|+|++|+..+.+|+...  
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d-------------~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~  203 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPD-------------KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG  203 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCC-------------cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence            456777888999999999999986655310             11345689999999999999999999999998654  


Q ss_pred             CC-Cccceeeeecc
Q 011164          479 KF-LLLPIFNIYAR  491 (492)
Q Consensus       479 p~-n~KA~~r~~~~  491 (492)
                      |. ...|+|++.+.
T Consensus       204 P~~~~da~~~~gla  217 (282)
T 4f3v_A          204 EACARAIAWYLAMA  217 (282)
T ss_dssp             TTTHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHH
Confidence            44 45576665543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=94.95  E-value=0.065  Score=44.52  Aligned_cols=69  Identities=17%  Similarity=-0.023  Sum_probs=53.1

Q ss_pred             HHHHHhhhHHHH----cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHH----hcCHHHHHHHH
Q 011164          400 GKKKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLC  471 (492)
Q Consensus       400 ~~~K~~Gn~~fk----~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk----~~~~~~ai~~~  471 (492)
                      ......|.-++.    .+++.+|+..|++|.+.                 -....+.|++.+|..    .+++++|+..+
T Consensus        58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~  120 (138)
T 1klx_A           58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTF  120 (138)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-----------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence            344556666666    78899999999998864                 125678899999999    89999999999


Q ss_pred             HHHHhcCCCCccceee
Q 011164          472 TKVQQQKKFLLLPIFN  487 (492)
Q Consensus       472 ~~al~~dp~n~KA~~r  487 (492)
                      .+|.+..  +..|.++
T Consensus       121 ~~Aa~~g--~~~A~~~  134 (138)
T 1klx_A          121 EKACRLG--SEDACGI  134 (138)
T ss_dssp             HHHHHTT--CHHHHHH
T ss_pred             HHHHHCC--CHHHHHH
Confidence            9999873  4555443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.64  E-value=0.12  Score=50.19  Aligned_cols=73  Identities=10%  Similarity=-0.024  Sum_probs=57.9

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+...|..++..|+|.+|...|++++........         ......+++|++.++..+|+|.+|+..+.+++++
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV---------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3445667788888899999999999999987543211         2234667899999999999999999999999987


Q ss_pred             CC
Q 011164          478 KK  479 (492)
Q Consensus       478 dp  479 (492)
                      .+
T Consensus       123 ~~  124 (373)
T 1hz4_A          123 IN  124 (373)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=94.56  E-value=0.029  Score=53.94  Aligned_cols=63  Identities=14%  Similarity=0.032  Sum_probs=54.2

Q ss_pred             HcccH-HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc--CHHHHHHHHHHHHhcCCCCccceee
Q 011164          411 KAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVQQQKKFLLLPIFN  487 (492)
Q Consensus       411 k~~~~-~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~--~~~~ai~~~~~al~~dp~n~KA~~r  487 (492)
                      +++.| ++|+..+.++|.+               .+-..+++++++.+...++  ++++++..++++|.++|+|..||+.
T Consensus        44 ~~~e~s~~aL~~t~~~L~~---------------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~  108 (306)
T 3dra_A           44 KAEEYSERALHITELGINE---------------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNY  108 (306)
T ss_dssp             HTTCCSHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHH---------------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHH
Confidence            33444 6999999999987               4445889999999999999  9999999999999999999988765


Q ss_pred             e
Q 011164          488 I  488 (492)
Q Consensus       488 ~  488 (492)
                      +
T Consensus       109 R  109 (306)
T 3dra_A          109 R  109 (306)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.56  E-value=0.2  Score=42.88  Aligned_cols=71  Identities=15%  Similarity=0.088  Sum_probs=60.2

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC-ChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~-~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      .+.++...++..+.|..|+..+..++.+.+.+... +       -..+..++..+|.++++.++|..|...+.+||.+-
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s-------p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS-------PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            46788889999999999999999999887554332 2       45678889999999999999999999999998763

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=94.45  E-value=0.079  Score=39.98  Aligned_cols=42  Identities=24%  Similarity=0.184  Sum_probs=36.4

Q ss_pred             CChHH-HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164          390 MNTEE-KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (492)
Q Consensus       390 ~~~~e-~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  431 (492)
                      |+..+ .++.|..+-.+|.++=+.|+|.+|+.+|..|+.++..
T Consensus         1 M~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A            1 MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            44555 6788999999999999999999999999999998753

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.39  E-value=0.11  Score=51.66  Aligned_cols=72  Identities=10%  Similarity=0.088  Sum_probs=59.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +......|+-++..|+|.+|+..|++++..+....+         ......+++|++.+|+.+++|.+|...+++++.+.
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD---------KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC---------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc---------chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            334557788999999999999999999987654332         23457889999999999999999999999998875


Q ss_pred             C
Q 011164          479 K  479 (492)
Q Consensus       479 p  479 (492)
                      +
T Consensus       206 ~  206 (434)
T 4b4t_Q          206 N  206 (434)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=94.03  E-value=0.04  Score=52.91  Aligned_cols=75  Identities=5%  Similarity=-0.306  Sum_probs=59.6

Q ss_pred             HHHHHHhhhHHHHcc--cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHH----HHh---cCHHHHHH
Q 011164          399 AGKKKEQGNTLFKAG--KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK----LKL---KDYKQAEK  469 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~--~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~----lk~---~~~~~ai~  469 (492)
                      ...+.-+|..+...+  ++.+|+..+.++|..               .+-...++++|..+.    .++   +++.+++.
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~---------------nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~  131 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALD---------------NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFD  131 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---------------CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHH---------------CcccHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            344567777777777  999999999999976               223367788888888    666   78999999


Q ss_pred             HHHHHHhcCCCCccceeee
Q 011164          470 LCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       470 ~~~~al~~dp~n~KA~~r~  488 (492)
                      .|+++|+.+|+|.-||+.+
T Consensus       132 ~~~~~l~~~pkny~aW~~R  150 (306)
T 3dra_A          132 ILEAMLSSDPKNHHVWSYR  150 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHH
Confidence            9999999999998887644

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=93.81  E-value=0.018  Score=44.27  Aligned_cols=39  Identities=10%  Similarity=-0.018  Sum_probs=35.0

Q ss_pred             HhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc-ceeeee
Q 011164          451 NLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL-PIFNIY  489 (492)
Q Consensus       451 ~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K-A~~r~~  489 (492)
                      ..++|.++++.++|++|+..++++++++|++.. +++++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg   42 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMG   42 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            368999999999999999999999999999988 877653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.37  E-value=0.071  Score=60.74  Aligned_cols=13  Identities=31%  Similarity=0.391  Sum_probs=8.5

Q ss_pred             CCccEEEEEEecC
Q 011164          268 DDKKVIKKILKEG  280 (492)
Q Consensus       268 ~d~~v~k~il~~G  280 (492)
                      ..-|+++-+.+-|
T Consensus       268 ~k~g~iy~itk~G  280 (1630)
T 1xi4_A          268 EKHDVVFLITKYG  280 (1630)
T ss_pred             cccCEEEEEecCc
Confidence            3446777777766

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=93.09  E-value=0.034  Score=55.95  Aligned_cols=51  Identities=18%  Similarity=0.214  Sum_probs=32.3

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a  474 (492)
                      .+...|+.+|.+|+|++|...|+++                       .-|.++|.|+.++|+|++|++.+.++
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------------------~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------------------SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             -------------CTTTHHHHHHHT-----------------------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-----------------------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence            7788999999999999999999866                       24677888888888888888888888

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=93.02  E-value=0.11  Score=43.07  Aligned_cols=65  Identities=9%  Similarity=-0.169  Sum_probs=52.1

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHH----hcCHHHHHHHHHHHHhcCCC
Q 011164          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk----~~~~~~ai~~~~~al~~dp~  480 (492)
                      .|.-++..+.+.+|+..|++|.+.                 -....++|++.+|..    .+++.+|+..+.+|.+.  .
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~-----------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL-----------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC-----------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence            455556667778899999998864                 126788999999999    89999999999999987  5


Q ss_pred             Cccceeee
Q 011164          481 LLLPIFNI  488 (492)
Q Consensus       481 n~KA~~r~  488 (492)
                      ++.|++++
T Consensus        92 ~~~a~~~L   99 (138)
T 1klx_A           92 DQDGCLIL   99 (138)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            67776654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=93.02  E-value=0.073  Score=51.97  Aligned_cols=40  Identities=3%  Similarity=-0.267  Sum_probs=27.0

Q ss_pred             HHhHhHHHHHHHHh-c-CHHHHHHHHHHHHhcCCCCccceee
Q 011164          448 VACNLNNAACKLKL-K-DYKQAEKLCTKVQQQKKFLLLPIFN  487 (492)
Q Consensus       448 ~~l~~N~a~~~lk~-~-~~~~ai~~~~~al~~dp~n~KA~~r  487 (492)
                      ..++++|..|..++ + ++.+++..|+++|+.||+|.-||+.
T Consensus       123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~  164 (349)
T 3q7a_A          123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAY  164 (349)
T ss_dssp             HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence            55666777777666 5 6777777777777777777666543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.00  E-value=0.22  Score=49.44  Aligned_cols=89  Identities=12%  Similarity=0.032  Sum_probs=71.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc-------CCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-------~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~  471 (492)
                      ..++-.+|......++...|...|.+|+.+..-.       ..+-......+.+.+..+..-++.+++.++++.+|+..+
T Consensus       115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l  194 (388)
T 2ff4_A          115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL  194 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3455566677777899999999999999876432       122335667888999999999999999999999999999


Q ss_pred             HHHHhcCCCCccceee
Q 011164          472 TKVQQQKKFLLLPIFN  487 (492)
Q Consensus       472 ~~al~~dp~n~KA~~r  487 (492)
                      ..++..+|-+..++..
T Consensus       195 ~~~~~~~P~~E~~~~~  210 (388)
T 2ff4_A          195 EALTFEHPYREPLWTQ  210 (388)
T ss_dssp             HHHHHHSTTCHHHHHH
T ss_pred             HHHHHhCCCCHHHHHH
Confidence            9999999988765543

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=92.66  E-value=0.56  Score=37.76  Aligned_cols=44  Identities=25%  Similarity=0.307  Sum_probs=37.6

Q ss_pred             CCCChH-HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164          388 WDMNTE-EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (492)
Q Consensus       388 ~~~~~~-e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  431 (492)
                      ..|+.. +.++.|..+-.+|..+=+.++|.+|+.+|..|+.+|..
T Consensus         6 ~~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A            6 SGMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            455555 67888999999999999999999999999999998754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=92.46  E-value=0.15  Score=51.97  Aligned_cols=40  Identities=13%  Similarity=-0.041  Sum_probs=33.1

Q ss_pred             HHhHhHHHHHHHH----hcCHHHHHHHHHHHHhcCCC---Cccceee
Q 011164          448 VACNLNNAACKLK----LKDYKQAEKLCTKVQQQKKF---LLLPIFN  487 (492)
Q Consensus       448 ~~l~~N~a~~~lk----~~~~~~ai~~~~~al~~dp~---n~KA~~r  487 (492)
                      ..++.|++.+|.+    .+++.+|+..+++|++.+|+   +..|+++
T Consensus       399 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~  445 (490)
T 2xm6_A          399 SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT  445 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence            5678899999999    89999999999999999854   6666543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=92.31  E-value=0.1  Score=50.65  Aligned_cols=43  Identities=2%  Similarity=-0.187  Sum_probs=29.4

Q ss_pred             HHHHhHhHHHHHHHHhcC-HHHHHHHHHHHHhcCCCCccceeee
Q 011164          446 LKVACNLNNAACKLKLKD-YKQAEKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       446 ~~~~l~~N~a~~~lk~~~-~~~ai~~~~~al~~dp~n~KA~~r~  488 (492)
                      -...+++++..+..+++. +++++.+++++++.+|+|..||+.+
T Consensus       142 rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R  185 (331)
T 3dss_A          142 RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR  185 (331)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            345667777777777776 5777777777777777777666543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=92.24  E-value=0.085  Score=51.13  Aligned_cols=64  Identities=6%  Similarity=-0.137  Sum_probs=50.7

Q ss_pred             HHcccHH-HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcC----------HHHHHHHHHHHHhcC
Q 011164          410 FKAGKYA-RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD----------YKQAEKLCTKVQQQK  478 (492)
Q Consensus       410 fk~~~~~-~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~----------~~~ai~~~~~al~~d  478 (492)
                      -+++.|. +|+..+.++|..               .+-..++++.+..+...++.          +.+++..++++|..+
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~---------------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~  104 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGA---------------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN  104 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTT---------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCCCHHHHHHHHHHHHH---------------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence            3566665 789999999876               33347888888888888776          789999999999999


Q ss_pred             CCCccceeee
Q 011164          479 KFLLLPIFNI  488 (492)
Q Consensus       479 p~n~KA~~r~  488 (492)
                      |+|..||+.+
T Consensus       105 PKny~aW~hR  114 (331)
T 3dss_A          105 PKSYGTWHHR  114 (331)
T ss_dssp             TTCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9998887644

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=92.19  E-value=0.15  Score=38.37  Aligned_cols=43  Identities=23%  Similarity=0.200  Sum_probs=36.4

Q ss_pred             CCChH-HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164          389 DMNTE-EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (492)
Q Consensus       389 ~~~~~-e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  431 (492)
                      .|++. ..++.|..+-.+|.++=+.|+|.+|+.+|..|+.++..
T Consensus         8 ~~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A            8 HMSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            45554 56788999999999999999999999999999998743

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=92.05  E-value=0.15  Score=49.68  Aligned_cols=62  Identities=13%  Similarity=-0.014  Sum_probs=53.3

Q ss_pred             cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCccceeee
Q 011164          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       412 ~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~-~~~~ai~~~~~al~~dp~n~KA~~r~  488 (492)
                      .+...+|+..+.++|..               ++-..+++++|..+..+++ .+++++..++++|..+|+|..||+.+
T Consensus        67 ~e~se~AL~lt~~~L~~---------------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR  129 (349)
T 3q7a_A           67 EEKSERALELTEIIVRM---------------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR  129 (349)
T ss_dssp             TCCSHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHh---------------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            34567899999999987               3445889999999999999 59999999999999999998887643

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=91.41  E-value=0.14  Score=52.78  Aligned_cols=68  Identities=16%  Similarity=0.039  Sum_probs=55.2

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      ...+. +.+.+++.+|...|++++....               ....++.+++...++++++++|+..+++++...| ++
T Consensus        17 ~~l~~-~~~~~~~~~a~~~~e~al~~~P---------------~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~   79 (530)
T 2ooe_A           17 SILIR-EAQNQPIDKARKTYERLVAQFP---------------SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI   79 (530)
T ss_dssp             HHHHH-HHHSSCHHHHHHHHHHHHTTCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred             HHHHH-HHHhCCHHHHHHHHHHHHHHCC---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence            33444 3567999999999999998743               2378889999999999999999999999999999 56


Q ss_pred             cceee
Q 011164          483 LPIFN  487 (492)
Q Consensus       483 KA~~r  487 (492)
                      ..|+.
T Consensus        80 ~lw~~   84 (530)
T 2ooe_A           80 DLWKC   84 (530)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65443

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=91.32  E-value=0.43  Score=36.05  Aligned_cols=42  Identities=19%  Similarity=0.246  Sum_probs=35.0

Q ss_pred             CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164          390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (492)
Q Consensus       390 ~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  431 (492)
                      |+..+.++.|..+-.+|...=+.|+|.+|+.+|..|+.++..
T Consensus         4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A            4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            343456778888888999999999999999999999998743

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=91.13  E-value=0.79  Score=35.21  Aligned_cols=63  Identities=14%  Similarity=0.134  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHhHhHHHH
Q 011164          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAA  456 (492)
Q Consensus       394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-~~~~~~~~~~~~~~~~l~~N~a~  456 (492)
                      ..++.|..+-.+|.++=+.++|.+|+.+|..|+.++.... ...++.....-..+..=|.+||-
T Consensus        10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE   73 (93)
T 1wfd_A           10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAE   73 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            4567788888999999999999999999999999875431 11222233333334444555554

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=90.28  E-value=0.97  Score=34.15  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=29.5

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  431 (492)
                      ..|..+-.++..+=+.|+|.+|+.+|..|+.++..
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~   48 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ   48 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34666778888888999999999999999998753

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=89.89  E-value=0.91  Score=45.60  Aligned_cols=83  Identities=10%  Similarity=-0.044  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHH-------------------HHHHhHhHH
Q 011164          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA-------------------LKVACNLNN  454 (492)
Q Consensus       394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~-------------------~~~~l~~N~  454 (492)
                      .....+..+-..|+.+++.|+|+.|++.|++|...         ..+..+-.                   ....-...+
T Consensus       143 ~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~---------~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~l  213 (449)
T 1b89_A          143 LLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST---------RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEEL  213 (449)
T ss_dssp             HHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCH---------HHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCc---------hhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHH
Confidence            44567778888999999999999999999999432         11111000                   000112246


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164          455 AACKLKLKDYKQAEKLCTKVQQQKKFLLLPI  485 (492)
Q Consensus       455 a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~  485 (492)
                      +.+|.+.|+|++|+....++|.+++.+.-++
T Consensus       214 v~~Yek~G~~eEai~lLe~aL~le~ah~~~f  244 (449)
T 1b89_A          214 INYYQDRGYFEELITMLEAALGLERAHMGMF  244 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSTTCCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhCCcHHHHHHH
Confidence            7899999999999999999999998775443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=89.11  E-value=0.53  Score=53.83  Aligned_cols=11  Identities=27%  Similarity=0.522  Sum_probs=4.2

Q ss_pred             EEEEcCCcccc
Q 011164          318 FEFKTDEEQVI  328 (492)
Q Consensus       318 ~~~~lg~~~~~  328 (492)
                      +.+.+.+..++
T Consensus       325 l~v~v~~~~iv  335 (1630)
T 1xi4_A          325 LSVCVEEENII  335 (1630)
T ss_pred             EEEEEccchhh
Confidence            33333333333

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.99  E-value=0.74  Score=49.48  Aligned_cols=59  Identities=20%  Similarity=0.197  Sum_probs=51.6

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a  474 (492)
                      -+-.++.-|.++++|+.|+..-++|+......               ..++.+||.||+++++|+.|+-..+-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse---------------F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDS---------------FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchh---------------hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            45667888889999999999999999985543               788999999999999999999887776

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=88.98  E-value=3.4  Score=39.21  Aligned_cols=80  Identities=21%  Similarity=0.152  Sum_probs=52.3

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHH-------------------------------------
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK-------------------------------------  444 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~-------------------------------------  444 (492)
                      ....|-++|+.|+|.+|+..++.+|..+....-.++++..++.                                     
T Consensus       117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYF  196 (325)
T 3mv2_A          117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYF  196 (325)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHG
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence            3448999999999999999999999876432211111111111                                     


Q ss_pred             ------HHHHHhHhHHHH-HHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          445 ------ALKVACNLNNAA-CKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       445 ------~~~~~l~~N~a~-~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                            +....+-++.|+ ..+|.++|..|...+++.|++.|+.
T Consensus       197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~  240 (325)
T 3mv2_A          197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG  240 (325)
T ss_dssp             GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence                  011111122333 5678999999999999999998853

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=88.90  E-value=2  Score=32.41  Aligned_cols=42  Identities=24%  Similarity=0.400  Sum_probs=34.4

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh
Q 011164          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD  437 (492)
Q Consensus       396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~  437 (492)
                      +..|...--++..+.+.|+|.+||.++++|..+|......++
T Consensus        12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltq   53 (97)
T 2crb_A           12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTE   53 (97)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            445677777889999999999999999999999976555443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=88.58  E-value=0.25  Score=49.97  Aligned_cols=85  Identities=18%  Similarity=-0.040  Sum_probs=49.8

Q ss_pred             HHHhhhHHHHcc---cHHHHHHHHHHHHHHhccc--------------CCCChHHHHHHH------HHHHHhHhHHHHH-
Q 011164          402 KKEQGNTLFKAG---KYARASKRYEKAVKYIEYD--------------TSFGDEEKKQAK------ALKVACNLNNAAC-  457 (492)
Q Consensus       402 ~K~~Gn~~fk~~---~~~~A~~~Y~~al~~l~~~--------------~~~~~~~~~~~~------~~~~~l~~N~a~~-  457 (492)
                      ....|..+.+.|   ++.+|+..|+++++.-...              .....+....+.      +-....++|++.+ 
T Consensus       179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~  258 (452)
T 3e4b_A          179 YVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLL  258 (452)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            345666777778   9999999999987642110              000001111111      2234557777777 


Q ss_pred             H--HHhcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164          458 K--LKLKDYKQAEKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       458 ~--lk~~~~~~ai~~~~~al~~dp~n~KA~~r~  488 (492)
                      +  ...+++++|+..+.++++.  ++..|+|+.
T Consensus       259 ~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~L  289 (452)
T 3e4b_A          259 YDFPELGDVEQMMKYLDNGRAA--DQPRAELLL  289 (452)
T ss_dssp             HHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            3  4567778888888777754  356666543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=88.46  E-value=0.81  Score=46.94  Aligned_cols=65  Identities=14%  Similarity=0.196  Sum_probs=40.4

Q ss_pred             HHHhhhHHHH-------cccHH-------HHHHHHHHHHH-HhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHH
Q 011164          402 KKEQGNTLFK-------AGKYA-------RASKRYEKAVK-YIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (492)
Q Consensus       402 ~K~~Gn~~fk-------~~~~~-------~A~~~Y~~al~-~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~  466 (492)
                      +...|.-+.+       .|++.       +|+..|++|++ ....               ...++.+++..+.+++++++
T Consensus       275 w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~---------------~~~l~~~~~~~~~~~g~~~~  339 (530)
T 2ooe_A          275 WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK---------------NMLLYFAYADYEESRMKYEK  339 (530)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS---------------CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHhcCCHHH
Confidence            3445555554       68876       89999999996 4221               14455556666666666666


Q ss_pred             HHHHHHHHHhcCCCC
Q 011164          467 AEKLCTKVQQQKKFL  481 (492)
Q Consensus       467 ai~~~~~al~~dp~n  481 (492)
                      |+..++++|+++|.+
T Consensus       340 A~~~~~~al~~~p~~  354 (530)
T 2ooe_A          340 VHSIYNRLLAIEDID  354 (530)
T ss_dssp             HHHHHHHHHHSSSSC
T ss_pred             HHHHHHHHhCccccC
Confidence            666666666665554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=88.40  E-value=1.6  Score=42.68  Aligned_cols=62  Identities=6%  Similarity=-0.079  Sum_probs=50.5

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      .+..++-+|++.+|+...++|+.+ +.               ....|.-++.++.-.|++++|++.+.+|+.++|...
T Consensus       283 lal~~l~~gd~d~A~~~l~rAl~L-n~---------------s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          283 KAVSALVKGKTDESYQAINTGIDL-EM---------------SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH-CC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhc-CC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            444566689999999999999987 11               134556688999999999999999999999999753

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=86.89  E-value=1.1  Score=45.47  Aligned_cols=86  Identities=13%  Similarity=-0.038  Sum_probs=48.0

Q ss_pred             HHHHHhhhHHHH----cccHHHHHHHHHHHHHHhc------------ccC--CCChHHH-----HHHHHHHHHhHhHHHH
Q 011164          400 GKKKEQGNTLFK----AGKYARASKRYEKAVKYIE------------YDT--SFGDEEK-----KQAKALKVACNLNNAA  456 (492)
Q Consensus       400 ~~~K~~Gn~~fk----~~~~~~A~~~Y~~al~~l~------------~~~--~~~~~~~-----~~~~~~~~~l~~N~a~  456 (492)
                      ......|..++.    .+++.+|+..|+++++.-.            ...  ..+.+..     .....-....+.|++.
T Consensus        40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~  119 (490)
T 2xm6_A           40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGV  119 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            345566666666    7888888888888775310            000  0000100     0111123445667777


Q ss_pred             HHHH----hcCHHHHHHHHHHHHhcCCCCccceee
Q 011164          457 CKLK----LKDYKQAEKLCTKVQQQKKFLLLPIFN  487 (492)
Q Consensus       457 ~~lk----~~~~~~ai~~~~~al~~dp~n~KA~~r  487 (492)
                      +|..    .+++++|+..+.++++.  ++..|+++
T Consensus       120 ~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~  152 (490)
T 2xm6_A          120 MYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQS  152 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence            7777    67777777777777664  35555544

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.83  E-value=4.7  Score=31.98  Aligned_cols=74  Identities=11%  Similarity=0.085  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc-------CCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHH
Q 011164          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (492)
Q Consensus       394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-------~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~  466 (492)
                      +....|-.+..+|-..=..|+-..|+.+|++++..|...       +....+.+...+.++.....||..+.-+++....
T Consensus        17 ~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~   96 (116)
T 2dl1_A           17 EAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEK   96 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344556666666766666799999999999999988542       2245688999999999999999999888875544


Q ss_pred             H
Q 011164          467 A  467 (492)
Q Consensus       467 a  467 (492)
                      .
T Consensus        97 ~   97 (116)
T 2dl1_A           97 G   97 (116)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=86.66  E-value=7.7  Score=36.78  Aligned_cols=79  Identities=15%  Similarity=0.215  Sum_probs=51.6

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHH--------------------------------------
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQA--------------------------------------  443 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~--------------------------------------  443 (492)
                      ....|-++|+.|+|.+|+..++.+|..+....-.++++..++                                      
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA  184 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA  184 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence            346799999999999999999999987743221121111110                                      


Q ss_pred             --------HHHHHHhHhHHHH-HHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          444 --------KALKVACNLNNAA-CKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       444 --------~~~~~~l~~N~a~-~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                              .+....+-++.|+ ..+|.++|..|...+++.|++.|+
T Consensus       185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~  230 (320)
T 3mkr_B          185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK  230 (320)
T ss_dssp             HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence                    0111112222333 567899999999999999999874

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=85.47  E-value=0.58  Score=47.19  Aligned_cols=18  Identities=11%  Similarity=0.117  Sum_probs=13.9

Q ss_pred             HcccHHHHHHHHHHHHHH
Q 011164          411 KAGKYARASKRYEKAVKY  428 (492)
Q Consensus       411 k~~~~~~A~~~Y~~al~~  428 (492)
                      ..+++.+|+..|+++++.
T Consensus       263 ~~~d~~~A~~~~~~Aa~~  280 (452)
T 3e4b_A          263 ELGDVEQMMKYLDNGRAA  280 (452)
T ss_dssp             GGCCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHC
Confidence            467888888888888753

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=83.49  E-value=0.79  Score=35.06  Aligned_cols=40  Identities=10%  Similarity=-0.031  Sum_probs=33.6

Q ss_pred             HHhHhHHHHHHHHhcC---HHHHHHHHHHHHhcCCCCccceee
Q 011164          448 VACNLNNAACKLKLKD---YKQAEKLCTKVQQQKKFLLLPIFN  487 (492)
Q Consensus       448 ~~l~~N~a~~~lk~~~---~~~ai~~~~~al~~dp~n~KA~~r  487 (492)
                      ..++..+|.+++-.++   ..+|.....++|.+||+|++|++-
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~   48 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSL   48 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHH
Confidence            4567778888876665   799999999999999999998763

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=81.32  E-value=2  Score=40.92  Aligned_cols=64  Identities=8%  Similarity=-0.038  Sum_probs=51.8

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      --.|..++..|++++|++.+++++..-+.             .....++.-++.+++++++.+.|.....+..+.+|
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~-------------~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEA-------------EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCS-------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCC-------------cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            46777888899999999999999754110             12366677789999999999999999999988887

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=81.10  E-value=1.2  Score=42.59  Aligned_cols=59  Identities=12%  Similarity=0.014  Sum_probs=43.7

Q ss_pred             cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc----------CCCCcc
Q 011164          414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ----------KKFLLL  483 (492)
Q Consensus       414 ~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~----------dp~n~K  483 (492)
                      ++++|...|+++..-...             -....+++|   |++++|+|++|....+.+++.          +|+|+.
T Consensus       193 ~~q~A~~~f~El~~~~p~-------------~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~  256 (310)
T 3mv2_B          193 TATSNFYYYEELSQTFPT-------------WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT  256 (310)
T ss_dssp             TTTHHHHHHHHHHTTSCS-------------HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred             cHHHHHHHHHHHHHhCCC-------------cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence            888898888887643210             012445666   999999999999999988877          588888


Q ss_pred             ceeee
Q 011164          484 PIFNI  488 (492)
Q Consensus       484 A~~r~  488 (492)
                      ++.+.
T Consensus       257 ~LaN~  261 (310)
T 3mv2_B          257 FLANQ  261 (310)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77554

>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}

Probab=80.22  E-value=2.6  Score=42.14  Aligned_cols=85  Identities=20%  Similarity=0.131  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHhh--hHHHHc-ccHHHHHHHHHHHHHHhcccCCCChHHH-------HHHHHHHHHhHhHHHHHHHHh
Q 011164          392 TEEKIEAAGKKKEQG--NTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEK-------KQAKALKVACNLNNAACKLKL  461 (492)
Q Consensus       392 ~~e~l~~a~~~K~~G--n~~fk~-~~~~~A~~~Y~~al~~l~~~~~~~~~~~-------~~~~~~~~~l~~N~a~~~lk~  461 (492)
                      +.+++..|+.+++++  +.-=+. .--++|+.+|++|+.+|+.....++-+.       ....++.-.-|+ .|+-..-.
T Consensus       422 L~eKi~~AE~~~~k~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDyy~-~AA~k~~y  500 (526)
T 2wb7_A          422 LQEKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDYYV-NAARKALN  500 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHHHH-HHHHHHhc
Confidence            345556666666554  211122 2347899999999999987553332211       112223333333 34444446


Q ss_pred             cCHHHHHHHHHHHHhc
Q 011164          462 KDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       462 ~~~~~ai~~~~~al~~  477 (492)
                      |..++|....++|=++
T Consensus       501 G~~eqAe~l~~~A~~~  516 (526)
T 2wb7_A          501 GDLEQAKIDAEKAKEY  516 (526)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHH
Confidence            7777777777766443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	492
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	8e-36
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	2e-19
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	3e-18
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	4e-32
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	4e-18
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	4e-15
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	6e-32
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	2e-19
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	2e-17
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	9e-31
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	6e-22
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	1e-19
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	2e-29
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	4e-14
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	8e-14
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	6e-29
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	1e-15
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	2e-12
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	8e-29
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	3e-18
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-14
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	9e-27
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	8e-21
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	7e-16
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-25
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-12
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	5e-10
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-24
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	4e-12
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-09
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	1e-22
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	7e-11
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	3e-10
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-22
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	9e-12
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	1e-07
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	9e-18
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	6e-05
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	7e-04
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	6e-17
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	3e-06
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	2e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-14
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-13
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	4e-13
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-04
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	4e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04
d1l1pa_	106	d.26.1.1 (A:) Trigger factor PPIase domain {Escher	0.004

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  127 bits (319), Expect = 8e-36
 Identities = 62/111 (55%), Positives = 78/111 (70%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIK 94
            + G+ K + KEG+G   P  G  V+VHY GTL +GT+FDSSRDR   F F LG+GNVIK
Sbjct: 8   KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 67

Query: 95  GWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
           GWD+G+ TM KGE A FTI  +  YG++GSPP IP  ATL F+VEL  W++
Sbjct: 68  GWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA 118

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 81.7 bits (201), Expect = 2e-19
 Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D  V+K I KEG G  +P  G  VKV  +G L++GT F      +    F F      VI
Sbjct: 9   DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSS--RDRGDQFSFNLGRGNVI 66

Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            G D  V TM K EVA  TI  +Y +G A S      +P  +T+ +EVEL  +
Sbjct: 67  KGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPP---KIPGGATLIFEVELFEW 116

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 78.2 bits (192), Expect = 3e-18
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVK----DGHFCP 206
           KDGG++K I KEG+    P     V V+Y   LE+G     +             G+   
Sbjct: 8   KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 67

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TM KGE     ++  YG+G+      G+   +P  ATL   +EL  W 
Sbjct: 68  GWDLGVATMTKGEVAEFTIRSDYGYGDA-----GSPPKIPGGATLIFEVELFEWS 117

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  116 bits (292), Expect = 4e-32
 Identities = 58/108 (53%), Positives = 74/108 (68%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
           ++G+ K + + G G +TP  GD V VHY G L +G +FDSS DR+ PF F++G+G VIK 
Sbjct: 3   DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 62

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           WDIG+ TMKKGE       PE AYG +GS P IP NATL F+VELL +
Sbjct: 63  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF 110

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 77.9 bits (191), Expect = 4e-18
 Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQV 327
            D+ V+K + + G G E P  G  V V   GKL +G  F      +  + F F   + QV
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSS--HDRNEPFVFSIGKGQV 59

Query: 328 IDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           I   D  V TMKK E+  L   PEYA+G+  S      +P N+T+ +EVEL+ F+
Sbjct: 60  IKAWDIGVATMKKGEICHLLCKPEYAYGATGSLP---KIPSNATLFFEVELLDFK 111

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 69.0 bits (168), Expect = 4e-15
 Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D V V+Y  +L +G        + +   F++  G    
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIK 61

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TMKKGE   L  KP+Y +G  G         +P NATL   +EL+ +K
Sbjct: 62  AWDIGVATMKKGEICHLLCKPEYAYGATGS-----LPKIPSNATLFFEVELLDFK 111

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 6e-32
 Identities = 63/109 (57%), Positives = 74/109 (67%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIK 94
            ++G+ K + +EG G + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK
Sbjct: 9   QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 68

Query: 95  GWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            WDI I TMK GE    T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 69  AWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 117

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.7 bits (201), Expect = 2e-19
 Identities = 48/116 (41%), Positives = 63/116 (54%), Gaps = 5/116 (4%)

Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 10  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDS--SLDRKDKFSFDLGKGEVI 67

Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S      +PPN+T+ +EVEL  F+ E
Sbjct: 68  KAWDIAIATMKVGEVCHITCKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKGE 120

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 2e-17
 Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVK----DGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG     +   +         G    
Sbjct: 9   QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 68

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
               A+ TMK GE   +  KP+Y +G       G+   +PPNATL   +EL  +K
Sbjct: 69  AWDIAIATMKVGEVCHITCKPEYAYGSA-----GSPPKIPPNATLVFEVELFEFK 118

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  113 bits (283), Expect = 9e-31
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 31  EKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG 90
           E  + + G+ ++  + GEG+  P  G  V++H  G    G  FD      T  +      
Sbjct: 2   EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGR-CGGRVFDCRDVAFTVGEGEDHD- 59

Query: 91  NVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSW 143
            +  G D  ++ M++ E  +  + P   +GE+G P   I PNA L ++V L S+
Sbjct: 60  -IPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 88.6 bits (219), Expect = 6e-22
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 7/119 (5%)

Query: 265 EITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           ++ +D  +I++  + G+G+  PNEGA V++ L G+        +     +      + ++
Sbjct: 3   DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGG-----RVFDCRDVAFTVGEGED 57

Query: 325 EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
             +  G+D+A+  M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK
Sbjct: 58  HDIPIGIDKALEKMQREEQCILHLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEK 114

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 82.0 bits (202), Expect = 1e-19
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 5/116 (4%)

Query: 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD-GVEFTVKDGHFC 205
           +D+ +DGGII++  + GE + NP +   V ++ E R    +   +         +D    
Sbjct: 2   EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHDIP 61

Query: 206 PTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
             + KA++ M++ E+ +L + P+YGFGE GK     +  + PNA L   + L S++
Sbjct: 62  IGIDKALEKMQREEQCILHLGPRYGFGEAGKP----KFGIEPNAELIYEVTLKSFE 113

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  109 bits (273), Expect = 2e-29
 Identities = 56/110 (50%), Positives = 70/110 (63%)

Query: 33  EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNV 92
           E+    +K   +  G+G   P+ GD V +HYTGTL +G +FDSS DR +PF+  +G G V
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQV 61

Query: 93  IKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IKGWD+GI  +  GE A  TIP   AYG  G P  IPPN+TL FDVELL 
Sbjct: 62  IKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.3 bits (161), Expect = 4e-14
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV----GKADGVEFTVKDGHFCPT 207
           +G +    +  G+    PK  D V ++Y   LE+G        +    +  +  G     
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
               +  +  GEK  L +   Y +G +G       G +PPN+TL   +EL+ 
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRGFP-----GLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.5 bits (159), Expect = 8e-14
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           SE+ +   V    +  GDG   P  G +V +   G L++G  F      +    F+    
Sbjct: 1   SEVIEGN-VKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSS--VDRGSPFQCNIG 57

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
             QVI G D  +  +   E A LTI   YA+G         ++PPNST+ ++VEL+ 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP---GLIPPNSTLVFDVELLK 111

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 6e-29
 Identities = 54/106 (50%), Positives = 70/106 (66%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           G++ + +  G+G   P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            G+  M  G+ A  TI P+ AYG +G P  IPP+ATL FDVELL  
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 1e-15
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGL 331
           V  + +  GDG   P  G    V   G L+DG  F         + F+F   +++VI G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD--RNKPFKFMLGKQEVIRGW 59

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +  V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 2e-12
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLA 209
           G+  + +  G+    PK     +V+Y   LEDG     +       +F +          
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + V  M  G++  L + P Y +G       G+ G +PP+ATL   +EL+  +
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGAT-----GHPGIIPPHATLVFDVELLKLE 107

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 8e-29
 Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 8/113 (7%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRD-------RSTPFKFTLGQG 90
              K ++K+G+  + P+ GD V   YTGTL DGT FD++          + P  F +G G
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 91  NVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSP-PTIPPNATLQFDVELLS 142
            VI+GWD  + TM KGE A   I PE AYG+ G P   IPPNA L F+VEL+ 
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVD 114

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (192), Expect = 3e-18
 Identities = 45/117 (38%), Positives = 61/117 (52%), Gaps = 7/117 (5%)

Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE-----QLFEFKTDEE 325
           K  K +LK+GD    P +G VV     G LQDGTVF     +  +     +   FK    
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +VI G D A++TM K E A L I PE+A+G        A +PPN+ + +EVELV  +
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD--AKIPPNAKLTFEVELVDID 116

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 2e-14
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 15/117 (12%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDG-----------MVVGKADGVEFTVKDG 202
              K +LK+G+K   PK  D V   Y   L+DG                A  + F V  G
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 203 HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
                  +A+ TM KGEK  L ++P++ +G+KG+     +  +PPNA L   +ELV 
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP----DAKIPPNAKLTFEVELVD 114

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 9e-27
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 4/117 (3%)

Query: 33  EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNV 92
           E  + G+ +++   GEG+  P  G  VEV   G   D                     ++
Sbjct: 4   EEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRF---EIGEGENLDL 60

Query: 93  IKGWDIGIKTMKKGENAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSWTSVKD 148
             G +  I+ M+KGE+++  + P  A+G  G     IPPNA L++++ L S+   K+
Sbjct: 61  PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 8e-21
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 7/120 (5%)

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            +D  +I++I   G+G+ +PNEGA+V+V L G  +D     ++   E  +          
Sbjct: 5   EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENL-----D 59

Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
           +  GL+RA+  M+K E +++ + P YAFG     +E   +PPN+ + YE+ L SFEK KE
Sbjct: 60  LPYGLERAIQRMEKGEHSIVYLKPSYAFG--SVGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 7e-16
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDG-MVVGKADGVEFTVKDGHFCPTLA 209
           +DGGII++I   GE +  P +   V V  E   +D      +        ++      L 
Sbjct: 6   EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLE 65

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
           +A++ M+KGE  ++ +KP Y FG  GK     +  +PPNA L+  L L S++   E
Sbjct: 66  RAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAKE 117

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (254), Expect = 1e-25
 Identities = 53/108 (49%), Positives = 70/108 (64%), Gaps = 4/108 (3%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
           + GL  ++V+ G+G + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI G
Sbjct: 106 STGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPG 162

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           W  G+K +KKG      IPPELAYG++G P  IPPN+TL FDVELL  
Sbjct: 163 WTEGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLDV 209

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 64.1 bits (155), Expect = 2e-12
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 9/122 (7%)

Query: 261 KTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEF 320
           K     T    ++ ++++ G G E P +   V V   G L DG  F       E      
Sbjct: 98  KEKGVKTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEP----L 152

Query: 321 KTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
               + VI G    +  +KK     L I PE A+G A        +PPNST+ ++VEL+ 
Sbjct: 153 SFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPG----IPPNSTLVFDVELLD 208

Query: 381 FE 382
            +
Sbjct: 209 VK 210

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 57.2 bits (137), Expect = 5e-10
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKAD--GVEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
           E PKD D V+VNY+  L DG     +   G   + +     P   + +K +KKG K+ L 
Sbjct: 120 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV 179

Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + P+  +G+ G         +PPN+TL   +EL+  K
Sbjct: 180 IPPELAYGKAGV------PGIPPNSTLVFDVELLDVK 210

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 98.4 bits (244), Expect = 2e-24
 Identities = 40/108 (37%), Positives = 50/108 (46%), Gaps = 3/108 (2%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
             GL+ K++  G G   P   D V V YTG L+DGT FDS+     P  F      VI G
Sbjct: 97  PSGLQYKVINSGNGV-KPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATF--QVSQVIPG 153

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           W   ++ M  G      +P  LAYG       I PN TL F + L+S 
Sbjct: 154 WTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISV 201

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 63.3 bits (153), Expect = 4e-12
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE 325
           +     +  K++  G+G  +P +   V V+  G+L DGTVF     S E+          
Sbjct: 94  VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVF----DSTEKTGKPATFQVS 148

Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
           QVI G   A+  M       + +    A+G          + PN T+ +++ L+S +K
Sbjct: 149 QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK 203

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 55.2 bits (132), Expect = 2e-09
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD--GVEFTVKDGHFCPTLA 209
             G+  K++  G   +  K  D V V Y  RL DG V    +  G   T +     P   
Sbjct: 97  PSGLQYKVINSGNGVKPGKS-DTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWT 155

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           +A++ M  G    + V     +G +        G + PN TL   + L+S K
Sbjct: 156 EALQLMPAGSTWEIYVPSGLAYGPRSVG-----GPIGPNETLIFKIHLISVK 202

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.1 bits (225), Expect = 1e-22
 Identities = 45/115 (39%), Positives = 55/115 (47%), Gaps = 12/115 (10%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL       G G      G  ++ HY G L +G  FDSS +R  P  F +G G VIKGWD
Sbjct: 9   GLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 67

Query: 98  I------GIKTMKKGENAVFTIPPELAYGESGS-----PPTIPPNATLQFDVELL 141
                  GI  M  G      IPPELAYG+ G+        IPP + L FD+E +
Sbjct: 68  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 57.6 bits (138), Expect = 7e-11
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE----EQVIDG 330
                G G     +G ++K   +GKL++G VF    +  +   F     E          
Sbjct: 13  CDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGIL 71

Query: 331 LDRAVITMKKNEVALLTIAPEYAFGS--AESQQELAVVPPNSTVHYEVELV 379
               +  M       L I PE A+G   A  +    ++PP S + +++E +
Sbjct: 72  GSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 55.6 bits (133), Expect = 3e-10
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 11/115 (9%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV--GKADGVEFTVKDGHF------- 204
           G+       G           +  +Y  +LE+G V       G   T + G         
Sbjct: 9   GLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 67

Query: 205 -CPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
                +  +  M  G K  L + P+  +G++G    G    +PP + L   +E +
Sbjct: 68  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 91.4 bits (226), Expect = 2e-22
 Identities = 55/143 (38%), Positives = 74/143 (51%), Gaps = 19/143 (13%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  + +  G G   P   D+ EVHYTG L DGT FDSSR+R  P  F      VIKGW 
Sbjct: 35  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTF--RPNEVIKGWT 92

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIK 157
             ++ M++G+     IP +LAYG +G    IPP + L+FDVEL+S               
Sbjct: 93  EALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISI-------------- 138

Query: 158 KILKEGEKWENPKDLDEVLVNYE 180
              K+G K    +++DE+L   E
Sbjct: 139 ---KDGGKGRTAEEVDEILRKAE 158

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 61.0 bits (147), Expect = 9e-12
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE 325
           +     ++ + +  G G   P      +V   G+L+DGTVF     S  E+         
Sbjct: 30  VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVF----DSSRERGKPTTFRPN 85

Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK 385
           +VI G   A+  M++ +   L I  + A+G         ++PP S + ++VEL+S    K
Sbjct: 86  EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGG---GMIPPYSPLEFDVELISI---K 139

Query: 386 ESWDMNTEEKIEAAGKKKEQ 405
           +     T E+++   +K E+
Sbjct: 140 DGGKGRTAEEVDEILRKAEE 159

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 49.4 bits (117), Expect = 1e-07
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHF--CPTLA 209
             G++ + +  G     P   D+  V+Y  RL DG V   +                   
Sbjct: 33  PSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNEVIKGWT 92

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDD 269
           +A++ M++G++  L +     +G  G       G +PP + L+  +EL+S K   +    
Sbjct: 93  EALQLMREGDRWRLFIPYDLAYGVTGGG-----GMIPPYSPLEFDVELISIKDGGKGRTA 147

Query: 270 KKVIKKILKEGD 281
           ++V + + K  +
Sbjct: 148 EEVDEILRKAEE 159

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 77.9 bits (191), Expect = 9e-18
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 15/102 (14%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGI 100
           + G +++V Y G L  G  FD+S +                P +F +G+G +I+G++  +
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 101 KTMKKGENAVFTIPPELAYGE--SGSPPTIPPNATLQFDVEL 140
             M+ G+     IP E AYG         IP +A  + D E 
Sbjct: 63  LDMEVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEADFEP 104

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 41.0 bits (95), Expect = 6e-05
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 12/103 (11%)

Query: 287 NEGAVVKVKLIGKLQDGTVF-----------VKKGHSEEEQLFEFKTDEEQVIDGLDRAV 335
           ++G  +KV  IGKL+ G VF                  E +  EF   E Q+I G + AV
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 336 ITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
           + M+  +   + I  E A+G   ++  +  +P ++    + E 
Sbjct: 63  LDMEVGDEKTVKIPAEKAYG-NRNEMLIQKIPRDAFKEADFEP 104

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 23/124 (18%)

Query: 173 DEVLVNYEARLEDGMVV-----------------GKADGVEFTVKDGHFCPTLAKAVKTM 215
            ++ V+Y  +LE G V                   + + +EF V +G       +AV  M
Sbjct: 6   VKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDM 65

Query: 216 KKGEKVLLAVKPQYGFGEKGKSASGNEG-AVPPNATLQIALELVSWK-----TVSEITDD 269
           + G++  + +  +  +G + +             A  +    +V        T++E+TD+
Sbjct: 66  EVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEADFEPEEGMVILAEGIPATITEVTDN 125

Query: 270 KKVI 273
           +  +
Sbjct: 126 EVTL 129

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 73.5 bits (180), Expect = 6e-17
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
             NGD   + +TG + D  +  S+  ++       G  + IKG++ G+  MK  +     
Sbjct: 2   LANGDIAIIDFTGIV-DNKKLASASAQNYELTI--GSNSFIKGFETGLIAMKVNQKKTLA 58

Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           +     Y           +  + F+V L +
Sbjct: 59  LTFPSDYHVKE-----LQSKPVTFEVVLKA 83

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 13/95 (13%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
            G +  +   G + D         S +             I G +  +I MK N+   L 
Sbjct: 4   NGDIAIIDFTGIV-DNKKL--ASASAQNYELTI--GSNSFIKGFETGLIAMKVNQKKTLA 58

Query: 348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +     +   E          +  V +EV L + +
Sbjct: 59  LTFPSDYHVKE--------LQSKPVTFEVVLKAIK 85

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 169 PKDLDEVLVNYEARLEDGMVVGK-ADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKP 227
             + D  ++++   +++  +    A   E T+    F       +  MK  +K  LA+  
Sbjct: 2   LANGDIAIIDFTGIVDNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTF 61

Query: 228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
              +  K             +  +   + L + K
Sbjct: 62  PSDYHVKE----------LQSKPVTFEVVLKAIK 85

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 69.6 bits (169), Expect = 1e-14
 Identities = 37/108 (34%), Positives = 59/108 (54%)

Query: 385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444
           KESW+M+T+EK+E A   KE+G   FK GKY +A  +Y K V ++E +    ++E K ++
Sbjct: 1   KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASE 60

Query: 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYARL 492
           +  +A  LN A C LKL++Y +A + C K           ++      
Sbjct: 61  SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ 108

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 2e-13
 Identities = 34/71 (47%), Positives = 53/71 (74%)

Query: 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKAL 446
           SW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF +EE ++A+AL
Sbjct: 1   SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 60

Query: 447 KVACNLNNAAC 457
           ++A +LN A C
Sbjct: 61  RLASHLNLAMC 71

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 64.6 bits (156), Expect = 4e-13
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 384 EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQ 442
           +K  +D   EEK+++A   KE+GN  FK  +   A  +Y++A+ +  +   + D+    +
Sbjct: 2   KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 61

Query: 443 AKALKVACNLNNAACKLKLKDYKQ 466
            K ++++CNLN A C  K KDY +
Sbjct: 62  KKNIEISCNLNLATCYNKNKDYPK 85

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARAS 419
           + E+  VP   T+  EV L   E+   S  +  +E+ +      E+G      G  A A 
Sbjct: 1   KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLL---YERGVLYDSLGLRALAR 57

Query: 420 KRYEKAVKY 428
             + +A+  
Sbjct: 58  NDFSQALAI 66

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-TSFGDEE 439
           F ++ +    + ++ +  +   K  GNT FK+  +  A K+Y K ++Y+E    +  D +
Sbjct: 9   FPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 68

Query: 440 KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY 489
             + + + ++C LN  ACKLK+ D++ A   C +  +        ++   
Sbjct: 69  GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRA 118

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 15/85 (17%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E  +  ++AG +  A +   +  +          +E      L     L  ++   + + 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWR----------QEPDNTGVL-----LLLSSIHFQCRR 48

Query: 464 YKQAEKLCTKVQQQKKFLLLPIFNI 488
             ++    T   +Q   L     N+
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNL 73

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} Length = 106

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           E  D V + +TG++ DG +F+  +  ++ F   +GQG +I G++ GIK  K GE     +
Sbjct: 16  EAEDRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDV 72

Query: 114 PPELAYGESGSPPTIPPNATLQFDVELLS 142
                Y               +F + L  
Sbjct: 73  TFPEEY-----HAENLKGKAAKFAINLKK 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	492
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.93
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.93
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.93
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.93
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.92
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.92
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.92
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.91
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.91
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.91
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.9
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.89
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.89
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.88
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.88
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.88
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.87
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.87
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.86
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.86
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.86
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.81
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.72
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.72
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.7
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.67
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.54
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.41
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.39
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.38
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.27
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.27
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.11
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.84
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.8
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.71
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.7
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.67
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.58
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.48
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.47
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.43
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.43
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.3
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.28
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.28
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.23
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.18
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.17
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.09
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.08
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.04
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.98
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.97
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.92
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.91
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.89
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.72
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.71
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.69
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.67
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.62
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.54
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.54
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.43
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.34
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.33
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.16
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.99
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.77
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.45
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.12
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.01
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	95.59
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.94
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	94.92
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	94.19
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	91.92
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	91.79
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	91.13
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	88.17
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	82.16

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=5.9e-26  Score=187.07  Aligned_cols=110  Identities=56%  Similarity=1.009  Sum_probs=105.6

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEec
Q 011164           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (492)
Q Consensus        35 ~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~  114 (492)
                      +++||+|+++++|+|...|..||.|.+||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~ip   87 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   87 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccccceeeeeeccCcceeeeeeeeeeeecCCceEEEEEC
Confidence            46899999999999977899999999999999999999999998889999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011164          115 PELAYGESGSPPTIPPNATLQFDVELLSWT  144 (492)
Q Consensus       115 ~~~ayg~~~~~~~i~~~~~l~~~vel~~~~  144 (492)
                      |++|||+.+.++.||++++|+|+|+|++|.
T Consensus        88 p~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          88 SDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             HHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            999999999988899999999999999985

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=1.3e-25  Score=184.99  Aligned_cols=110  Identities=39%  Similarity=0.639  Sum_probs=103.3

Q ss_pred             CCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEE
Q 011164          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (492)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~  347 (492)
                      .|++|.|+++++|+|...|..||+|++||++++.||++|++++  ....|+.|.+|.+++++||+.+|.+|++||+++|+
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~--~~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~   85 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSR--DRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT   85 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHH--HHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEE
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEcc--ccceeeeeeccCcceeeeeeeeeeeecCCceEEEE
Confidence            5899999999999997789999999999999999999999986  35689999999999999999999999999999999


Q ss_pred             ECCCCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       348 ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      |||++|||+.+.+   +.|||+++|+|+|+|++|.
T Consensus        86 ipp~laYG~~g~~---~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          86 IRSDYGYGDAGSP---PKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             ECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             ECHHHhCCcCCCC---CccCcCCcEEEEEEEEEEe
Confidence            9999999999875   4699999999999999985

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.6e-25  Score=183.61  Aligned_cols=111  Identities=42%  Similarity=0.613  Sum_probs=103.8

Q ss_pred             CCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEE
Q 011164          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (492)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~  347 (492)
                      .|+++.|+++++|.|...|..||+|+|||++++.||++||+++  ....|+.|.+|.+++++||+.+|.+|++||+++|+
T Consensus         9 ~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~--~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~   86 (120)
T d1q1ca1           9 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSL--DRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHIT   86 (120)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEST--TSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEecc--ccccceeeecCCCceeeeeeeeeccccCCcEEEEE
Confidence            4899999999999997789999999999999999999999986  36789999999999999999999999999999999


Q ss_pred             ECCCCccCCCccccccccCCCCccEEEEEEEeeeee
Q 011164          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (492)
Q Consensus       348 ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~  383 (492)
                      |||++|||+.+.+   +.|||+++|+|+|+|++|+.
T Consensus        87 ip~~laYG~~g~~---~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          87 CKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             ECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             ECHHHhCCCcCCC---CCCCcCCcEEEEEEEEEEeC
Confidence            9999999998875   47999999999999999974

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.8e-25  Score=183.43  Aligned_cols=111  Identities=57%  Similarity=0.936  Sum_probs=105.9

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEec
Q 011164           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (492)
Q Consensus        35 ~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~  114 (492)
                      .++||+|+++++|+|...|..||.|.|||++++.||++|++|++++.|+.|.+|.+++++||+++|.+|++||+++|.||
T Consensus         9 ~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip   88 (120)
T d1q1ca1           9 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK   88 (120)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccccccceeeecCCCceeeeeeeeeccccCCcEEEEEEC
Confidence            35899999999999977799999999999999999999999999889999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011164          115 PELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (492)
Q Consensus       115 ~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~  145 (492)
                      |++|||+.+.++.||++++|+|+|+|+++..
T Consensus        89 ~~laYG~~g~~~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          89 PEYAYGSAGSPPKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             HHHhCCCcCCCCCCCcCCcEEEEEEEEEEeC
Confidence            9999999998889999999999999999863

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.4e-25  Score=178.81  Aligned_cols=107  Identities=50%  Similarity=0.934  Sum_probs=102.2

Q ss_pred             CeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCc
Q 011164           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL  117 (492)
Q Consensus        38 g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~  117 (492)
                      |++|+++++|+|...|..||.|.+||++++.||++|++|++++.|+.|.+|.+++++||+++|.+|++||+++|+|||++
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~l   80 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECHHH
Confidence            79999999999966789999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011164          118 AYGESGSPPTIPPNATLQFDVELLSWT  144 (492)
Q Consensus       118 ayg~~~~~~~i~~~~~l~~~vel~~~~  144 (492)
                      |||..+.++.||+|++|+|+|+|++++
T Consensus        81 aYG~~g~~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          81 AYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             hCCCCCCCCCCCcCCeEEEEEEEEEEC
Confidence            999999888899999999999999873

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=8.9e-25  Score=178.95  Aligned_cols=110  Identities=50%  Similarity=0.861  Sum_probs=105.3

Q ss_pred             ecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEe
Q 011164           34 IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI  113 (492)
Q Consensus        34 ~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i  113 (492)
                      +.++|++++++++|+|...|+.||.|.+||++++.||++|+++++...|+.|.++.+++++||+++|.+|++|++++|.|
T Consensus         3 ~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~i   82 (113)
T d1yata_           3 VIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI   82 (113)
T ss_dssp             ECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEE
T ss_pred             CccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccccCCceEeeeeccCceeeehhhhcccccCCCEEEEEe
Confidence            46899999999999996679999999999999999999999999888999999999999999999999999999999999


Q ss_pred             cCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011164          114 PPELAYGESGSPPTIPPNATLQFDVELLSW  143 (492)
Q Consensus       114 ~~~~ayg~~~~~~~i~~~~~l~~~vel~~~  143 (492)
                      ||++|||..+.++.||++++|+|+|+|+++
T Consensus        83 P~~laYG~~g~~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          83 PGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             chHHeecCcCCCCccCcCCeEEEEEEEEEe
Confidence            999999999988889999999999999987

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.92  E-value=1.4e-25  Score=182.92  Aligned_cols=110  Identities=53%  Similarity=0.911  Sum_probs=85.9

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEec
Q 011164           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (492)
Q Consensus        35 ~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~  114 (492)
                      +++|++|+++++|+|...|..||.|.|||++++.||++|++|++++.|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~ip   81 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCK   81 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEEC-
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEecceeeeeecCCCcEEeeeeeeehhccCCcEEEEEEC
Confidence            46899999999999977899999999999999999999999998889999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011164          115 PELAYGESGSPPTIPPNATLQFDVELLSWT  144 (492)
Q Consensus       115 ~~~ayg~~~~~~~i~~~~~l~~~vel~~~~  144 (492)
                      |++|||+.+.++.||++++|+|+|+|+++.
T Consensus        82 ~~layG~~g~~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          82 PEYAYGATGSLPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             ---CCCTTTCTTTSCTTCCCEEEEEEEEEE
T ss_pred             HHHhCCCCCCCCcCCcCCeEEEEEEEEEEC
Confidence            999999999888999999999999999874

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.8e-24  Score=177.97  Aligned_cols=110  Identities=41%  Similarity=0.652  Sum_probs=100.5

Q ss_pred             cEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCC-----CCcccEEEEcCCcccchhHHHHHhccCcCcEEE
Q 011164          271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHS-----EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVAL  345 (492)
Q Consensus       271 ~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~-----~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~  345 (492)
                      ++.|+|+++|+|...|..||.|+|||++++.||++||++...     ...+|+.|.+|++++++||+.+|.+|++||+++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            578999999999778999999999999999999999988531     345799999999999999999999999999999


Q ss_pred             EEECCCCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       346 i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      |+|||++|||+.+...  ..|||+++|+|+|+|++|+
T Consensus        82 ~~ip~~~ayG~~g~~~--~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPD--AKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             EEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEEC
T ss_pred             EEECHHHhCCccCCCC--CCcCcCCeEEEEEEEEEEC
Confidence            9999999999988753  5699999999999999874

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-24  Score=176.00  Aligned_cols=107  Identities=32%  Similarity=0.604  Sum_probs=99.7

Q ss_pred             cEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECC
Q 011164          271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAP  350 (492)
Q Consensus       271 ~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~  350 (492)
                      |+.++++++|+|...|..||.|++||++++.||++||+++  +...|+.|.+|.+++++||+.+|.+|++||+++|+|||
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~--~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~   78 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSR--DRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHH--HHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeee--ccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECH
Confidence            5899999999997679999999999999999999999886  46789999999999999999999999999999999999


Q ss_pred             CCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          351 EYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       351 ~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      ++|||+.+.+   +.|||+++|+|+|+|++++
T Consensus        79 ~laYG~~g~~---~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          79 DYAYGATGHP---GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             GGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             HHhCCCCCCC---CCCCcCCeEEEEEEEEEEC
Confidence            9999998865   4699999999999999874

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.91  E-value=1.9e-25  Score=182.12  Aligned_cols=110  Identities=38%  Similarity=0.598  Sum_probs=85.0

Q ss_pred             CCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEE
Q 011164          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (492)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~  347 (492)
                      .|+++.|+++++|.|...|..||.|+|||++++.||++||++.  ....|+.|.+|++++++||+.+|.+|++||+++|+
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~--~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~   79 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSH--DRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLL   79 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC--------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEE
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEE--ecceeeeeecCCCcEEeeeeeeehhccCCcEEEEE
Confidence            4789999999999997789999999999999999999999886  46789999999999999999999999999999999


Q ss_pred             ECCCCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       348 ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      |||++|||+.+..   +.|||+++|+|+|+|++|+
T Consensus        80 ip~~layG~~g~~---~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          80 CKPEYAYGATGSL---PKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             C----CCCTTTCT---TTSCTTCCCEEEEEEEEEE
T ss_pred             ECHHHhCCCCCCC---CcCCcCCeEEEEEEEEEEC
Confidence            9999999998865   4799999999999999985

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.1e-24  Score=175.68  Aligned_cols=109  Identities=30%  Similarity=0.505  Sum_probs=101.8

Q ss_pred             CccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEE
Q 011164          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTI  348 (492)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~i  348 (492)
                      |+++.++++++|+|...|+.||.|++||++++.||++|++++  ....++.|.++.+++++||+.+|.+|++||+++|++
T Consensus         5 d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~--~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~i   82 (113)
T d1yata_           5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSV--DRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI   82 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEST--TTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEE
T ss_pred             cCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccc--cCCceEeeeeccCceeeehhhhcccccCCCEEEEEe
Confidence            789999999999997779999999999999999999999886  467899999999999999999999999999999999


Q ss_pred             CCCCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          349 APEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       349 p~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      ||++|||+.+.+   +.|||+++|+|+|+|++|.
T Consensus        83 P~~laYG~~g~~---~~IP~~s~Lif~ieLl~I~  113 (113)
T d1yata_          83 PGPYAYGPRGFP---GLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             CGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             chHHeecCcCCC---CccCcCCeEEEEEEEEEeC
Confidence            999999999875   4699999999999999873

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.8e-23  Score=170.78  Aligned_cols=106  Identities=47%  Similarity=0.853  Sum_probs=98.9

Q ss_pred             CeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCC-------CCCcEEEEcCCCcccHhHHHHhccCcCccEEE
Q 011164           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRD-------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (492)
Q Consensus        38 g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~-------~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~  110 (492)
                      .+.|+|+++|+|...|+.||.|.|||++++.||++||+|++       .++|+.|.+|.+++++||+++|.+|++||+++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            47899999999977899999999999999999999999964       35799999999999999999999999999999


Q ss_pred             EEecCCcccCCCCCC-CCCCCCCceEEEEEEEEE
Q 011164          111 FTIPPELAYGESGSP-PTIPPNATLQFDVELLSW  143 (492)
Q Consensus       111 ~~i~~~~ayg~~~~~-~~i~~~~~l~~~vel~~~  143 (492)
                      |+|||++|||+.+.+ ..||++++|+|+|+|+++
T Consensus        82 ~~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~v  115 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI  115 (116)
T ss_dssp             EEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEECHHHhCCccCCCCCCcCcCCeEEEEEEEEEE
Confidence            999999999999875 579999999999999987

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.90  E-value=1.6e-23  Score=189.70  Aligned_cols=110  Identities=36%  Similarity=0.634  Sum_probs=104.3

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEE
Q 011164           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (492)
Q Consensus        33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~  112 (492)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++|+.++.|+.|.+|  ++++||+++|.+|++|++++|+
T Consensus        94 ~~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~~~~--~~i~G~~e~l~~m~~G~~~~~~  170 (204)
T d1fd9a_          94 VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIY  170 (204)
T ss_dssp             EECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EEecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEecccccCCCCceecCC--ccchhHHHHhcCCCCCCEEEEE
Confidence            45899999999999999 88999999999999999999999999888899999887  7999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011164          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (492)
Q Consensus       113 i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~  145 (492)
                      |||++|||+.+.++.||+|++|+|+|+|+++..
T Consensus       171 iP~~laYG~~g~~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         171 VPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             ECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             EChHHCcCCCCCCCCcCcCCcEEEEEEEEEEEc
Confidence            999999999999889999999999999999864

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=4.1e-23  Score=187.70  Aligned_cols=108  Identities=49%  Similarity=0.916  Sum_probs=102.9

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEE
Q 011164           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (492)
Q Consensus        33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~  112 (492)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++|++++.|+.|.+|  ++|+||+++|.+|++|++++|+
T Consensus       103 ~~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~~--~vi~g~~e~l~~m~~G~k~~~~  179 (210)
T d1q6ha_         103 KTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  179 (210)
T ss_dssp             EECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEE
T ss_pred             EEccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecccCCCcceeccC--ccchhHHHHHhhccCCCEEEEE
Confidence            46899999999999999 89999999999999999999999999998899999997  7999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011164          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (492)
Q Consensus       113 i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~  144 (492)
                      |||++|||+.+.+ .||+|++|+|+|+|+++.
T Consensus       180 iP~~laYG~~g~~-~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         180 IPPELAYGKAGVP-GIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             ECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEC
T ss_pred             ECHHHCcCCCCCC-CCCcCCcEEEEEEEEEEC
Confidence            9999999999986 599999999999999873

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.89  E-value=1.1e-22  Score=167.41  Aligned_cols=110  Identities=35%  Similarity=0.660  Sum_probs=98.0

Q ss_pred             eeeeCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCC---cccchhHHHHHhccCc
Q 011164          264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE---EQVIDGLDRAVITMKK  340 (492)
Q Consensus       264 ~d~~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~---~~~~~gle~~l~~m~~  340 (492)
                      +|++.|+++.|+++++|+|...|..||+|+|||++++ +|++|+++       +..|.++.   +.+|+||+.+|.+|++
T Consensus         2 e~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~-------~~~~~~~~~~~~~vi~G~~~~l~~M~~   73 (115)
T d1kt1a3           2 EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-------DVAFTVGEGEDHDIPIGIDKALEKMQR   73 (115)
T ss_dssp             EETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE-------EEEEETTCGGGGTCCHHHHHHHTTCCT
T ss_pred             CccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc-------ccCceeeeccccccCchhHhhhccchh
Confidence            5788999999999999999889999999999999997 78888654       35677765   3689999999999999


Q ss_pred             CcEEEEEECCCCccCCCccccccccCCCCccEEEEEEEeeeee
Q 011164          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (492)
Q Consensus       341 Ge~~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~  383 (492)
                      ||+++|+|||++|||+.+.+.  ..|||+++|+|+|+|++|++
T Consensus        74 Ge~~~v~ip~~~ayG~~g~~~--~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          74 EEQCILHLGPRYGFGEAGKPK--FGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             TCEEEEEECGGGSSCTTCBTT--TTBCTTCCEEEEEEEEEEEC
T ss_pred             hceeEEEeCHHHCcCCCCCCC--CCcCcCCeEEEEEEEEEEEe
Confidence            999999999999999988753  46999999999999999986

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.88  E-value=8.4e-23  Score=177.04  Aligned_cols=117  Identities=23%  Similarity=0.388  Sum_probs=102.2

Q ss_pred             eeCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEE
Q 011164          266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVAL  345 (492)
Q Consensus       266 ~~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~  345 (492)
                      +..++||+++++++|.|...|..||+|+|||++++.||++|+++..  ...|  |.++.+.+++||+.+|.+|++||+++
T Consensus        30 ~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~--~~~p--~~~~~~~~i~G~~e~l~~M~~Ge~~~  105 (160)
T d1jvwa_          30 VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE--RGKP--TTFRPNEVIKGWTEALQLMREGDRWR  105 (160)
T ss_dssp             EECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH--HTSC--EEECGGGSCHHHHHHHTTCCTTCEEE
T ss_pred             EECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeecc--ccCc--cccCccccchhHHHHhcCccccceeE
Confidence            3457899999999999966899999999999999999999998752  3445  66677899999999999999999999


Q ss_pred             EEECCCCccCCCccccccccCCCCccEEEEEEEeeeeecccCCC
Q 011164          346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWD  389 (492)
Q Consensus       346 i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~  389 (492)
                      |+|||++|||..+..   +.|||+++|+|+|+|++|.+......
T Consensus       106 v~iPp~laYG~~g~~---~~IPp~s~LifeIeLl~i~~~~~~~~  146 (160)
T d1jvwa_         106 LFIPYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDGGKGRT  146 (160)
T ss_dssp             EEECGGGTTTTTCSS---SSSCTTCCEEEEEEEEEEGGGCCSCB
T ss_pred             EEeCHHHCcCCCCCC---CCcCcCCcEEEEEEEEEEecCCCCCC
Confidence            999999999998764   46999999999999999986555444

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=1.4e-22  Score=183.53  Aligned_cols=109  Identities=26%  Similarity=0.431  Sum_probs=100.2

Q ss_pred             eCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEE
Q 011164          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (492)
Q Consensus       267 ~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i  346 (492)
                      ..++|+.++++++|+| ..|..||+|+|||++++.||++||+++.  ...|++|.+|  ++|+||+.+|.+|++|++++|
T Consensus        95 ~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~--~~~p~~~~~~--~~i~G~~e~l~~m~~G~~~~~  169 (204)
T d1fd9a_          95 VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEK--TGKPATFQVS--QVIPGWTEALQLMPAGSTWEI  169 (204)
T ss_dssp             ECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHH--HCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEE
T ss_pred             EecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEeccccc--CCCCceecCC--ccchhHHHHhcCCCCCCEEEE
Confidence            4578999999999999 8899999999999999999999999863  5678888766  799999999999999999999


Q ss_pred             EECCCCccCCCccccccccCCCCccEEEEEEEeeeee
Q 011164          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (492)
Q Consensus       347 ~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~  383 (492)
                      +|||++|||..|.+   +.|||+++|+|+|+|++|.+
T Consensus       170 ~iP~~laYG~~g~~---~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         170 YVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             EECGGGTTTTCCCS---SSCCTTCCEEEEEEEEEEEC
T ss_pred             EEChHHCcCCCCCC---CCcCcCCcEEEEEEEEEEEc
Confidence            99999999999875   47999999999999999985

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=8.4e-23  Score=170.39  Aligned_cols=111  Identities=41%  Similarity=0.712  Sum_probs=102.5

Q ss_pred             eeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhcc------CcC
Q 011164           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKT------MKK  105 (492)
Q Consensus        32 ~~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~------m~~  105 (492)
                      ...+++|++|+++++|+| ..|+.||.|.|||++++.||++|++|+..+.|+.|.+|.+.++++|++++.+      |++
T Consensus         3 ~~~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~   81 (125)
T d1u79a_           3 FSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT   81 (125)
T ss_dssp             CEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred             cEECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhcccccC
Confidence            356899999999999999 7899999999999999999999999988789999999999999999998855      999


Q ss_pred             ccEEEEEecCCcccCCCCC-----CCCCCCCCceEEEEEEEEE
Q 011164          106 GENAVFTIPPELAYGESGS-----PPTIPPNATLQFDVELLSW  143 (492)
Q Consensus       106 Ge~~~~~i~~~~ayg~~~~-----~~~i~~~~~l~~~vel~~~  143 (492)
                      |++++|+|||++|||+++.     ...||++++|+|+|||+.+
T Consensus        82 G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          82 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            9999999999999999875     2358999999999999875

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.87  E-value=1.8e-22  Score=174.99  Aligned_cols=113  Identities=42%  Similarity=0.673  Sum_probs=102.8

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEE
Q 011164           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (492)
Q Consensus        33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~  112 (492)
                      ..+++||+|+++++|+|...|..||.|.|||++++.||++|+++...+.|+  .++.+.+++||+++|.+|++|++++|+
T Consensus        30 ~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~~~~p~--~~~~~~~i~G~~e~l~~M~~Ge~~~v~  107 (160)
T d1jvwa_          30 VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPT--TFRPNEVIKGWTEALQLMREGDRWRLF  107 (160)
T ss_dssp             EECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCE--EECGGGSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeeccccCcc--ccCccccchhHHHHhcCccccceeEEE
Confidence            458999999999999996678999999999999999999999998766674  556669999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEEeecc
Q 011164          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTSVK  147 (492)
Q Consensus       113 i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~~~  147 (492)
                      |||++|||..+.++.||++++|+|+|+|+++.+..
T Consensus       108 iPp~laYG~~g~~~~IPp~s~LifeIeLl~i~~~~  142 (160)
T d1jvwa_         108 IPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGG  142 (160)
T ss_dssp             ECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGGC
T ss_pred             eCHHHCcCCCCCCCCcCcCCcEEEEEEEEEEecCC
Confidence            99999999999888899999999999999997543

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=5e-22  Score=180.48  Aligned_cols=107  Identities=32%  Similarity=0.544  Sum_probs=99.5

Q ss_pred             eCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEE
Q 011164          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (492)
Q Consensus       267 ~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i  346 (492)
                      ..++|+.++++++|+| ..|..||+|+|||++++.||++||+++  ..+.|+.|.+|  ++|+||+.+|.+|++|++++|
T Consensus       104 ~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~--~~~~p~~~~~~--~vi~g~~e~l~~m~~G~k~~~  178 (210)
T d1q6ha_         104 TSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSY--TRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKL  178 (210)
T ss_dssp             ECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGG--GGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEE
T ss_pred             EccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecc--cCCCcceeccC--ccchhHHHHHhhccCCCEEEE
Confidence            4578999999999999 999999999999999999999999986  46789999986  799999999999999999999


Q ss_pred             EECCCCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       347 ~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~  382 (492)
                      +|||++|||..|.+    .|||+++|+|+|+|++|+
T Consensus       179 ~iP~~laYG~~g~~----~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         179 VIPPELAYGKAGVP----GIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             EECGGGTTTTTCBT----TBCTTCCEEEEEEEEEEC
T ss_pred             EECHHHCcCCCCCC----CCCcCCcEEEEEEEEEEC
Confidence            99999999999864    499999999999999874

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=5.6e-22  Score=165.35  Aligned_cols=112  Identities=23%  Similarity=0.412  Sum_probs=100.8

Q ss_pred             eCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhc------cCc
Q 011164          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVIT------MKK  340 (492)
Q Consensus       267 ~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~------m~~  340 (492)
                      +.++||+++++++|+| +.|..||+|+|||++++.||++||+|+  ....|+.|.+|.+.+++||+.++.+      |++
T Consensus         5 ~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~--~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~   81 (125)
T d1u79a_           5 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSY--NRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT   81 (125)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHH--HHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred             ECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEeccc--ccCcceeEecCccccccchhhhccchhhcccccC
Confidence            4678999999999999 899999999999999999999999986  3568999999999999999998865      999


Q ss_pred             CcEEEEEECCCCccCCCcccc--ccccCCCCccEEEEEEEeee
Q 011164          341 NEVALLTIAPEYAFGSAESQQ--ELAVVPPNSTVHYEVELVSF  381 (492)
Q Consensus       341 Ge~~~i~ip~~~~yg~~~~~~--~~~~ip~~~~l~~~v~l~~~  381 (492)
                      ||+++|+|||++|||+.+...  ....|||+++|+|+|||+.+
T Consensus        82 G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          82 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            999999999999999987532  13569999999999999976

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.4e-21  Score=159.63  Aligned_cols=108  Identities=39%  Similarity=0.722  Sum_probs=94.0

Q ss_pred             CCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCC---cccchhHHHHHhccCcCcEE
Q 011164          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE---EQVIDGLDRAVITMKKNEVA  344 (492)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~---~~~~~gle~~l~~m~~Ge~~  344 (492)
                      .|+++.|+|+++|.|..+|..||.|+|||++++.+|+ |+++       +..+..+.   ..+++||+.||.+|++||++
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~-~~~~-------~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~   77 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-------ELRFEIGEGENLDLPYGLERAIQRMEKGEHS   77 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEE-EEEE-------EEEEETTCGGGGTCCHHHHHHHTTCCTTCEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCc-Eeec-------cccceeeecceeeeCcHHHHhhhcchhhCeE
Confidence            5899999999999998899999999999999997775 4433       24555554   36999999999999999999


Q ss_pred             EEEECCCCccCCCccccccccCCCCccEEEEEEEeeeeecc
Q 011164          345 LLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK  385 (492)
Q Consensus       345 ~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~  385 (492)
                      +|+|||++|||..+.+.  ..|||+++|+|+|+|++|.+.+
T Consensus        78 ~i~ip~~~ayG~~g~~~--~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          78 IVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             EEEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEEECCC
T ss_pred             EEEECHHHhCcccCCCC--CccCcCCeEEEEEEEEEEEeCC
Confidence            99999999999988653  5799999999999999999765

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.86  E-value=3.2e-21  Score=158.40  Aligned_cols=109  Identities=31%  Similarity=0.682  Sum_probs=96.9

Q ss_pred             eeeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCC---cccHhHHHHhccCcCcc
Q 011164           31 EKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG---NVIKGWDIGIKTMKKGE  107 (492)
Q Consensus        31 ~~~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~---~~~~gle~~l~~m~~Ge  107 (492)
                      ++++.++||+|+++++|+|...|..||.|.|||++++ +|++++++     +..|.++.+   .+++||+++|.+|++||
T Consensus         2 e~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~-----~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge   75 (115)
T d1kt1a3           2 EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQREE   75 (115)
T ss_dssp             EETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTC
T ss_pred             CccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc-----ccCceeeeccccccCchhHhhhccchhhc
Confidence            3456899999999999999778999999999999996 77888764     466777653   58999999999999999


Q ss_pred             EEEEEecCCcccCCCCCCC-CCCCCCceEEEEEEEEEee
Q 011164          108 NAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSWTS  145 (492)
Q Consensus       108 ~~~~~i~~~~ayg~~~~~~-~i~~~~~l~~~vel~~~~~  145 (492)
                      +++|+|||++|||..+.++ .||++++|+|+|+|+++.+
T Consensus        76 ~~~v~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          76 QCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             EEEEEECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEEC
T ss_pred             eeEEEeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEEe
Confidence            9999999999999998875 6999999999999999865

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.7e-19  Score=148.34  Aligned_cols=107  Identities=33%  Similarity=0.679  Sum_probs=92.5

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCC---cccHhHHHHhccCcCccEEEE
Q 011164           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG---NVIKGWDIGIKTMKKGENAVF  111 (492)
Q Consensus        35 ~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~---~~~~gle~~l~~m~~Ge~~~~  111 (492)
                      .++||.|+|+++|+|...|..||.|.|||++++.+|. ++++     +..|..+.+   ++++||+++|.+|++||+++|
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~-~~~~-----~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i   79 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIV   79 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEE-EEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCc-Eeec-----cccceeeecceeeeCcHHHHhhhcchhhCeEEE
Confidence            4589999999999997789999999999999987764 5543     345665543   689999999999999999999


Q ss_pred             EecCCcccCCCCCCC-CCCCCCceEEEEEEEEEeecc
Q 011164          112 TIPPELAYGESGSPP-TIPPNATLQFDVELLSWTSVK  147 (492)
Q Consensus       112 ~i~~~~ayg~~~~~~-~i~~~~~l~~~vel~~~~~~~  147 (492)
                      +|||++|||..+.+. .||++++|+|+|+|+++...+
T Consensus        80 ~ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          80 YLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             EECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             EECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeCC
Confidence            999999999998764 799999999999999997643

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.72  E-value=5.2e-18  Score=148.96  Aligned_cols=106  Identities=35%  Similarity=0.566  Sum_probs=101.0

Q ss_pred             ccCCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCH
Q 011164          385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY  464 (492)
Q Consensus       385 ~~~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~  464 (492)
                      ++.|+|+..|+++.+..++++||.+|+.|+|.+|+..|++|+.+++.......+.......+...+|+|+|.||+++++|
T Consensus         1 ~e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           1 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            46899999999999999999999999999999999999999999988888888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCccceeeeec
Q 011164          465 KQAEKLCTKVQQQKKFLLLPIFNIYA  490 (492)
Q Consensus       465 ~~ai~~~~~al~~dp~n~KA~~r~~~  490 (492)
                      .+|+.+|++||+++|+|.+|+||+..
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~  106 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGE  106 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHH
Confidence            99999999999999999999998764

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.72  E-value=8.4e-19  Score=149.94  Aligned_cols=130  Identities=25%  Similarity=0.428  Sum_probs=91.7

Q ss_pred             CCCCCEEEEEEEEEecCCCEEeecCC-------------CCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCccc
Q 011164           53 PENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY  119 (492)
Q Consensus        53 ~~~gd~V~v~Y~~~~~dg~~~~ss~~-------------~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ay  119 (492)
                      +++||.|.+||++++.||++|++|++             .+.|+.|.+|.+++++||+.+|.+|++|+++.|.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            68999999999999999999999953             35799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCceEEEEEEEEEeecccccccccceeeeeec-CcccCCCCCcceEEEEEEEEcCCCcEEeeec
Q 011164          120 GESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKE-GEKWENPKDLDEVLVNYEARLEDGMVVGKAD  193 (492)
Q Consensus       120 g~~~~~~~i~~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~-g~g~~~~~~~d~V~v~y~~~l~~g~~~~~~~  193 (492)
                      |+++..        +++.+..-.+.. .......+  ...... -.+......++.|++||||||||.++.|+-+
T Consensus        82 G~~d~~--------~v~~vp~~~f~~-~~~~~~~~--~~~~~~~~~~~V~~v~~~~v~vD~NHPlAG~~L~f~ve  145 (151)
T d1ix5a_          82 GNRNEM--------LIQKIPRDAFKE-ADFEPEEG--MVILAEGIPATITEVTDNEVTLDFNHELAGKDLVFTIK  145 (151)
T ss_dssp             CSCCST--------TBCCEETHHHHT-STTCCCTT--EEEESSSCEEEEEEEETTEEEEECCCSSTTCCEEEECC
T ss_pred             cccccC--------ccceehhhhccc-cccccccc--eEEecCCCceEEEEEcCCEEEEECCCcCCCCeEEEEEE
Confidence            997743        111111111100 00000000  000000 0111222345789999999999999988754

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.70  E-value=1.7e-17  Score=143.24  Aligned_cols=107  Identities=29%  Similarity=0.447  Sum_probs=96.4

Q ss_pred             cccCCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-HHHHHHHHHHHHhHhHHHHHHHHhc
Q 011164          384 EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-EEKKQAKALKVACNLNNAACKLKLK  462 (492)
Q Consensus       384 ~~~~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~-~~~~~~~~~~~~l~~N~a~~~lk~~  462 (492)
                      .++.|+|+.+++++.|..+|++||.+|++|+|.+|+..|++|++++.......+ ........+.+.+|+|+|.||++++
T Consensus         2 ~~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~   81 (153)
T d2fbna1           2 KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK   81 (153)
T ss_dssp             CCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhc
Confidence            357899999999999999999999999999999999999999999876655444 3445667788999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCccceeeeec
Q 011164          463 DYKQAEKLCTKVQQQKKFLLLPIFNIYA  490 (492)
Q Consensus       463 ~~~~ai~~~~~al~~dp~n~KA~~r~~~  490 (492)
                      +|.+|+.+|++||+++|+|.|||||+..
T Consensus        82 ~~~~Al~~~~~al~~~p~~~ka~~~~g~  109 (153)
T d2fbna1          82 DYPKAIDHASKVLKIDKNNVKALYKLGV  109 (153)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             ccchhhhhhhccccccchhhhhhHHhHH
Confidence            9999999999999999999999999754

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-16  Score=140.61  Aligned_cols=104  Identities=38%  Similarity=0.621  Sum_probs=98.9

Q ss_pred             CCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHH
Q 011164          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (492)
Q Consensus       387 ~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~  466 (492)
                      +|+|+.+++++.|..++++||.+|++++|.+|+..|++||+++........+.......+...+|+|+|.||+++++|.+
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~   80 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA   80 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhccc
Confidence            59999999999999999999999999999999999999999998888888888889999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCccceeeeec
Q 011164          467 AEKLCTKVQQQKKFLLLPIFNIYA  490 (492)
Q Consensus       467 ai~~~~~al~~dp~n~KA~~r~~~  490 (492)
                      |+.+|++||+++|+|++|+||...
T Consensus        81 A~~~~~~al~~~p~~~~a~~~~g~  104 (170)
T d1p5qa1          81 AIESCNKALELDSNNEKGLSRRGE  104 (170)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccchhhhhhhccccchhhhHHHHH
Confidence            999999999999999999998653

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.54  E-value=2.1e-15  Score=128.50  Aligned_cols=74  Identities=32%  Similarity=0.535  Sum_probs=66.6

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEEcCC-----------CCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCcc
Q 011164          286 PNEGAVVKVKLIGKLQDGTVFVKKGH-----------SEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAF  354 (492)
Q Consensus       286 p~~g~~V~v~y~~~~~~g~~~d~~~~-----------~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~y  354 (492)
                      .++|+.|++||++++.||++||+|+.           .....|++|.+|.+++++|||.+|.+|++|+++.|.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            46899999999999999999999852           1345799999999999999999999999999999999999999


Q ss_pred             CCCcc
Q 011164          355 GSAES  359 (492)
Q Consensus       355 g~~~~  359 (492)
                      |..+.
T Consensus        82 G~~d~   86 (151)
T d1ix5a_          82 GNRNE   86 (151)
T ss_dssp             CSCCS
T ss_pred             ccccc
Confidence            97643

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.41  E-value=1.6e-13  Score=104.88  Aligned_cols=84  Identities=23%  Similarity=0.435  Sum_probs=75.7

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCC
Q 011164           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (492)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~  131 (492)
                      ++++||.|.|+|+++. ||+.|+++..  ..+.|.+|.++++|||+.+|.+|++|+++.|.+++...|+..+.     +|
T Consensus         1 k~a~GD~V~idy~g~~-dG~~~~~~~~--~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l-----aG   72 (85)
T d1hxva_           1 KLANGDIAIIDFTGIV-DNKKLASASA--QNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL-----QS   72 (85)
T ss_dssp             CCCSSEEEEEEEEEEE-TTEECSTTCC--SEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG-----GS
T ss_pred             CCCCCCEEEEEEEEEE-CCEEcccccc--cCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC-----CC
Confidence            4679999999999996 9999998765  57889999999999999999999999999999999999998663     67


Q ss_pred             CceEEEEEEEEE
Q 011164          132 ATLQFDVELLSW  143 (492)
Q Consensus       132 ~~l~~~vel~~~  143 (492)
                      +++.|+|++.++
T Consensus        73 k~~~f~V~v~~V   84 (85)
T d1hxva_          73 KPVTFEVVLKAI   84 (85)
T ss_dssp             CCCEEEEEECCB
T ss_pred             CcEEEEEEEEEe
Confidence            899999998765

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.39  E-value=4.5e-13  Score=102.31  Aligned_cols=85  Identities=20%  Similarity=0.362  Sum_probs=74.7

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCccccccc
Q 011164          285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELA  364 (492)
Q Consensus       285 ~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~~  364 (492)
                      ++..||.|+|+|++++ ||+.|+++    ....+.|.+|.+.++|||+.+|.+|++||++.|.+++..+|+..+      
T Consensus         1 k~a~GD~V~idy~g~~-dG~~~~~~----~~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~------   69 (85)
T d1hxva_           1 KLANGDIAIIDFTGIV-DNKKLASA----SAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKE------   69 (85)
T ss_dssp             CCCSSEEEEEEEEEEE-TTEECSTT----CCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSG------
T ss_pred             CCCCCCEEEEEEEEEE-CCEEcccc----cccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCccc------
Confidence            3678999999999997 99998654    345788999999999999999999999999999999999999754      


Q ss_pred             cCCCCccEEEEEEEeeee
Q 011164          365 VVPPNSTVHYEVELVSFE  382 (492)
Q Consensus       365 ~ip~~~~l~~~v~l~~~~  382 (492)
                        .+|+++.|+|+|++++
T Consensus        70 --laGk~~~f~V~v~~Vk   85 (85)
T d1hxva_          70 --LQSKPVTFEVVLKAIK   85 (85)
T ss_dssp             --GGSCCCEEEEEECCBC
T ss_pred             --CCCCcEEEEEEEEEeC
Confidence              3588999999999874

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.38  E-value=2.2e-13  Score=118.90  Aligned_cols=101  Identities=24%  Similarity=0.426  Sum_probs=86.7

Q ss_pred             ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-CChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHH
Q 011164          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (492)
Q Consensus       391 ~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~  469 (492)
                      +.+..+..+..+++.|+.+|+.++|.+|+..|++||+++..... ........+.+....+++|||.|++++++|++||.
T Consensus        19 ~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~   98 (169)
T d1ihga1          19 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD   98 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhh
Confidence            45677889999999999999999999999999999998754322 22234445678899999999999999999999999


Q ss_pred             HHHHHHhcCCCCccceeeeecc
Q 011164          470 LCTKVQQQKKFLLLPIFNIYAR  491 (492)
Q Consensus       470 ~~~~al~~dp~n~KA~~r~~~~  491 (492)
                      +|++||+++|++.+||||+..+
T Consensus        99 ~~~~al~~~p~~~~a~~~~g~~  120 (169)
T d1ihga1          99 SCLEALEIDPSNTKALYRRAQG  120 (169)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhHHHhHHHH
Confidence            9999999999999999987543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.4e-12  Score=112.35  Aligned_cols=84  Identities=23%  Similarity=0.229  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHH
Q 011164          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (492)
Q Consensus       392 ~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~  471 (492)
                      .+..++.|..++.+||.+|++|+|.+|+..|++++++               .+....+|+|+|.|++++++|.+|+.+|
T Consensus         3 ~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~---------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~   67 (159)
T d1a17a_           3 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL---------------NPSNAIYYGNRSLAYLRTECYGYALGDA   67 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------STTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc---------------chhhhhhhhhhHHHHHhccccchHHHHH
Confidence            3566899999999999999999999999999999987               3335889999999999999999999999


Q ss_pred             HHHHhcCCCCccceeeeec
Q 011164          472 TKVQQQKKFLLLPIFNIYA  490 (492)
Q Consensus       472 ~~al~~dp~n~KA~~r~~~  490 (492)
                      +++|+++|++.+|++++..
T Consensus        68 ~kal~~~p~~~~a~~~~g~   86 (159)
T d1a17a_          68 TRAIELDKKYIKGYYRRAA   86 (159)
T ss_dssp             HHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHcccchHHHHHHHH
Confidence            9999999999999987643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=7.5e-13  Score=117.97  Aligned_cols=77  Identities=30%  Similarity=0.359  Sum_probs=70.8

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      |..+|++||.+|++|+|.+|+..|++||..-               +....+|+|+|.||+++++|++|+.+|++||+++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~---------------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN---------------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            6789999999999999999999999999873               2347899999999999999999999999999999


Q ss_pred             CCCccceeeeec
Q 011164          479 KFLLLPIFNIYA  490 (492)
Q Consensus       479 p~n~KA~~r~~~  490 (492)
                      |++.+||+++..
T Consensus        69 p~~~~a~~~lg~   80 (201)
T d2c2la1          69 GQSVKAHFFLGQ   80 (201)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHH
Confidence            999999988654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=9.7e-13  Score=107.34  Aligned_cols=78  Identities=23%  Similarity=0.154  Sum_probs=69.9

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .++.++++||.+|++|+|++|+..|+++|+.               .+....+|+|+|.||+++++|.+|+.+|++++++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~---------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKL---------------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------CCcchhhhhcccccccccccccccchhhhhHHHh
Confidence            5778999999999999999999999999987               2334779999999999999999999999999999


Q ss_pred             CCCCccceeeeec
Q 011164          478 KKFLLLPIFNIYA  490 (492)
Q Consensus       478 dp~n~KA~~r~~~  490 (492)
                      +|++.++|+++..
T Consensus        67 ~p~~~~~~~~~g~   79 (117)
T d1elwa_          67 KPDWGKGYSRKAA   79 (117)
T ss_dssp             CTTCHHHHHHHHH
T ss_pred             ccchhhHHHHHHH
Confidence            9999999988653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8.2e-12  Score=103.43  Aligned_cols=76  Identities=26%  Similarity=0.308  Sum_probs=68.5

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      +.|.+.|+.||.+|+.|+|.+|+.+|+++|++-               +....++.|+|.||.++++|.+|+.+|+++|+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~---------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELD---------------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            468899999999999999999999999999872               22377999999999999999999999999999


Q ss_pred             cCCCCccceee
Q 011164          477 QKKFLLLPIFN  487 (492)
Q Consensus       477 ~dp~n~KA~~r  487 (492)
                      ++|++..+++.
T Consensus        67 l~~~~~~~~~~   77 (128)
T d1elra_          67 VGRENREDYRQ   77 (128)
T ss_dssp             HHHHSTTCHHH
T ss_pred             hCcccHHHHHH
Confidence            99999877654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=4.4e-11  Score=93.37  Aligned_cols=82  Identities=16%  Similarity=0.052  Sum_probs=69.8

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+-+.|+.+|++|+|..|+..|++|++.........        .....++.|+|.|+.++|+|++|+.++++||+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~--------~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC--------ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            34566899999999999999999999999865432221        1246789999999999999999999999999999


Q ss_pred             CCCccceeee
Q 011164          479 KFLLLPIFNI  488 (492)
Q Consensus       479 p~n~KA~~r~  488 (492)
                      |+|..|++++
T Consensus        77 P~~~~a~~Nl   86 (95)
T d1tjca_          77 PEHQRANGNL   86 (95)
T ss_dssp             TTCHHHHHHH
T ss_pred             cCCHHHHHHH
Confidence            9999998765

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=3.7e-09  Score=83.48  Aligned_cols=88  Identities=26%  Similarity=0.500  Sum_probs=74.6

Q ss_pred             CCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCC
Q 011164           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (492)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~  130 (492)
                      +.++.||.|.|+|+++. ||+.+.+...  ..+.|.+|.+.++++|+.+|.||++|++..|.+.....|....     .+
T Consensus        13 r~a~~GD~v~id~~~~~-dG~~~~~~~~--~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~~-----la   84 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGSV-DGEEFEGGKA--SDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAEN-----LK   84 (106)
T ss_dssp             SSCCTTEEEEEEEECCS-SSSCCSTTEE--EEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCTT-----TT
T ss_pred             ccccCCCEEEEEEEEEE-CCEECCCCcc--cceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCchh-----hC
Confidence            45679999999999864 8888875432  5689999999999999999999999999999998877776544     46


Q ss_pred             CCceEEEEEEEEEeec
Q 011164          131 NATLQFDVELLSWTSV  146 (492)
Q Consensus       131 ~~~l~~~vel~~~~~~  146 (492)
                      +..+.|.|++.++...
T Consensus        85 GK~v~f~V~v~~i~~~  100 (106)
T d1l1pa_          85 GKAAKFAINLKKVEER  100 (106)
T ss_dssp             TCCEEEEEEEEEEECC
T ss_pred             CCEEEEEEEEEEeccc
Confidence            7999999999998753

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=4.8e-09  Score=82.77  Aligned_cols=90  Identities=13%  Similarity=0.234  Sum_probs=74.0

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCcccccc
Q 011164          284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQEL  363 (492)
Q Consensus       284 ~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~  363 (492)
                      +.+..||.|+|+|++.. ||+.+..    .....+.|.+|.+.+++||+.+|.||++|++..|.+.....|...      
T Consensus        13 r~a~~GD~v~id~~~~~-dG~~~~~----~~~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~------   81 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGSV-DGEEFEG----GKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAE------   81 (106)
T ss_dssp             SSCCTTEEEEEEEECCS-SSSCCST----TEEEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCT------
T ss_pred             ccccCCCEEEEEEEEEE-CCEECCC----CcccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCch------
Confidence            55678999999999976 8887743    245568899999999999999999999999999999766666532      


Q ss_pred             ccCCCCccEEEEEEEeeeeeccc
Q 011164          364 AVVPPNSTVHYEVELVSFEKEKE  386 (492)
Q Consensus       364 ~~ip~~~~l~~~v~l~~~~~~~~  386 (492)
                        --+|..+.|.|+|+++.+...
T Consensus        82 --~laGK~v~f~V~v~~i~~~~l  102 (106)
T d1l1pa_          82 --NLKGKAAKFAINLKKVEEREL  102 (106)
T ss_dssp             --TTTTCCEEEEEEEEEEECCCC
T ss_pred             --hhCCCEEEEEEEEEEeccccC
Confidence              245889999999999996543

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.71  E-value=5.2e-09  Score=83.77  Aligned_cols=86  Identities=23%  Similarity=0.500  Sum_probs=73.8

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCC
Q 011164           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (492)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~  131 (492)
                      .++.||.|.|+|+++. ||+.+.....  ..+.|.+|.+.++++|+.+|.||++|+++.|.++....|.....     ++
T Consensus        23 ~a~~gD~v~id~~~~~-dG~~~~~~~~--~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~l-----aG   94 (113)
T d1t11a3          23 AAENGKRVSIDFVGSI-DGVEFEGGKA--ENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----KG   94 (113)
T ss_dssp             CCCTTCEEEEEEEEES-SSSCCTTCEE--EEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----SS
T ss_pred             cccCCCEEEEEEEEEE-CCEEccCCcc--ceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCcccc-----CC
Confidence            4789999999999885 8888766543  57899999999999999999999999999999988777766543     67


Q ss_pred             CceEEEEEEEEEee
Q 011164          132 ATLQFDVELLSWTS  145 (492)
Q Consensus       132 ~~l~~~vel~~~~~  145 (492)
                      .++.|.|++.++..
T Consensus        95 k~~~f~v~v~~Ik~  108 (113)
T d1t11a3          95 KAAKFAIKVNKVEA  108 (113)
T ss_dssp             CEEEECCCEEEEEE
T ss_pred             CeEEEEEEEEEEEe
Confidence            99999999998865

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.70  E-value=3.9e-09  Score=84.49  Aligned_cols=90  Identities=13%  Similarity=0.327  Sum_probs=73.9

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCcccccc
Q 011164          284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQEL  363 (492)
Q Consensus       284 ~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~  363 (492)
                      +.+..||.|+|+|++.. ||+.+..    .....+.|.+|.+.++++|+.+|.||++|+++.|.+.....|....     
T Consensus        22 r~a~~gD~v~id~~~~~-dG~~~~~----~~~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~-----   91 (113)
T d1t11a3          22 EAAENGKRVSIDFVGSI-DGVEFEG----GKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN-----   91 (113)
T ss_dssp             CCCCTTCEEEEEEEEES-SSSCCTT----CEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT-----
T ss_pred             ccccCCCEEEEEEEEEE-CCEEccC----CccceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCccc-----
Confidence            45789999999999997 7877743    2456788999999999999999999999999999987666665432     


Q ss_pred             ccCCCCccEEEEEEEeeeeeccc
Q 011164          364 AVVPPNSTVHYEVELVSFEKEKE  386 (492)
Q Consensus       364 ~~ip~~~~l~~~v~l~~~~~~~~  386 (492)
                         -+|.++.|.|+|+++.+...
T Consensus        92 ---laGk~~~f~v~v~~Ik~~~l  111 (113)
T d1t11a3          92 ---LKGKAAKFAIKVNKVEAREL  111 (113)
T ss_dssp             ---TSSCEEEECCCEEEEEEEEC
T ss_pred             ---cCCCeEEEEEEEEEEEeccC
Confidence               25889999999999987543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.67  E-value=4.6e-09  Score=89.50  Aligned_cols=84  Identities=13%  Similarity=0.120  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (492)
Q Consensus       394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~  473 (492)
                      +.+..+...+.+|+.+|+.|+|.+|+..|++||.+....+....   .........+|+|+|.||.++|+|++|+.+|++
T Consensus         4 ~~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~---~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~   80 (156)
T d2hr2a1           4 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA---FDHAGFDAFCHAGLAEALAGLRSFDEALHSADK   80 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC---CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh---cccchhHHHHHHHHHHHHHHcCccchhhHhhhh
Confidence            44667778889999999999999999999999998765433211   112334567899999999999999999999999


Q ss_pred             HHhcCCC
Q 011164          474 VQQQKKF  480 (492)
Q Consensus       474 al~~dp~  480 (492)
                      +|.+.|.
T Consensus        81 al~~~~~   87 (156)
T d2hr2a1          81 ALHYFNR   87 (156)
T ss_dssp             HHHHHHH
T ss_pred             hhhcccc
Confidence            9988653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.58  E-value=1.7e-08  Score=80.76  Aligned_cols=73  Identities=10%  Similarity=-0.012  Sum_probs=65.8

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL  481 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n  481 (492)
                      ....|..++++|+|.+|+..|+++++.               .+....+|.++|.|+.++++|.+|+.++.+||+++|++
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~---------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK---------------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc---------------ccccchhhhhhhhhhhhhhhHHHhhccccccccccccc
Confidence            456799999999999999999999987               23348899999999999999999999999999999999


Q ss_pred             ccceeeee
Q 011164          482 LLPIFNIY  489 (492)
Q Consensus       482 ~KA~~r~~  489 (492)
                      ..+++.+.
T Consensus        84 ~~a~~~la   91 (112)
T d1hxia_          84 IAVHAALA   91 (112)
T ss_dssp             HHHHHHHH
T ss_pred             ccchHHHH
Confidence            99988754

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.1e-08  Score=87.32  Aligned_cols=74  Identities=18%  Similarity=0.104  Sum_probs=47.9

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+..+|..++.+++|..|+..|+++..       .           ...+++|+|.||+++|+|++|+.+|++||++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~~-------~-----------~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l   65 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAVQD-------P-----------HSRICFNIGCMYTILKNMTEAEKAFTRSINR   65 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhcCC-------C-----------CHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence            344566777777777777777777764311       0           1234667777777777777777777777777


Q ss_pred             CCCCccceeeee
Q 011164          478 KKFLLLPIFNIY  489 (492)
Q Consensus       478 dp~n~KA~~r~~  489 (492)
                      ||++..|++++.
T Consensus        66 dp~~~~a~~~~g   77 (192)
T d1hh8a_          66 DKHLAVAYFQRG   77 (192)
T ss_dssp             CTTCHHHHHHHH
T ss_pred             hhhhhhhHHHHH
Confidence            777777766553

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=7.3e-08  Score=77.53  Aligned_cols=73  Identities=14%  Similarity=-0.029  Sum_probs=64.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|+.+++.|+|.+|+..|++++++-               +....+|.|+|.|+.++++|++|+.++.++++++
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          37 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---------------PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hhhhhcccccccccccccccchhhhhHHHhc---------------cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            3456788999999999999999999999873               2346789999999999999999999999999999


Q ss_pred             CCCcccee
Q 011164          479 KFLLLPIF  486 (492)
Q Consensus       479 p~n~KA~~  486 (492)
                      |+|..++.
T Consensus       102 p~~~~~~~  109 (117)
T d1elwa_         102 ANNPQLKE  109 (117)
T ss_dssp             TTCHHHHH
T ss_pred             CCCHHHHH
Confidence            99986654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=5.9e-08  Score=88.78  Aligned_cols=78  Identities=14%  Similarity=-0.035  Sum_probs=68.6

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+..+|+.+++.|+|++|+..|+++|++-.               -...+|+|+|.|+.++++|++|+.+++++|+
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p---------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRP---------------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC---------------CCHHHHhhhchHHHHHHHHHHhhhhhhHHHH
Confidence            3577788999999999999999999999998722               2367899999999999999999999999999


Q ss_pred             cCCCCccceeeee
Q 011164          477 QKKFLLLPIFNIY  489 (492)
Q Consensus       477 ~dp~n~KA~~r~~  489 (492)
                      ++|++..+++++.
T Consensus       100 ~~p~~~~a~~~lg  112 (259)
T d1xnfa_         100 LDPTYNYAHLNRG  112 (259)
T ss_dssp             HCTTCTHHHHHHH
T ss_pred             HHhhhhhhHHHHH
Confidence            9999999887654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=2.1e-07  Score=80.84  Aligned_cols=94  Identities=12%  Similarity=0.043  Sum_probs=80.6

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc-------CCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHH
Q 011164          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE  468 (492)
Q Consensus       396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-------~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai  468 (492)
                      +.....+...|+.++..|++.+|+..|++|+.+....       ..+-......+.+....++.|+|.+++++|+|.+|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            4556788999999999999999999999999975432       122335667888999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCccceeeee
Q 011164          469 KLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       469 ~~~~~al~~dp~n~KA~~r~~  489 (492)
                      .+|+++|+++|.+..++++..
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~  108 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLI  108 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCccHHHHHHHH
Confidence            999999999999998877654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.30  E-value=4.6e-07  Score=76.42  Aligned_cols=71  Identities=13%  Similarity=0.006  Sum_probs=62.8

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      .-+-..|..+++.++|.+|+..|++||.+               .+....+|.|+|.|+.++|+|++|+.++.++++++|
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~---------------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P  132 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKI---------------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  132 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccc---------------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            34557899999999999999999999987               333477999999999999999999999999999999


Q ss_pred             CCccce
Q 011164          480 FLLLPI  485 (492)
Q Consensus       480 ~n~KA~  485 (492)
                      +|..+.
T Consensus       133 ~n~~~~  138 (153)
T d2fbna1         133 NNLDIR  138 (153)
T ss_dssp             TCHHHH
T ss_pred             CCHHHH
Confidence            998664

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=5.6e-07  Score=72.79  Aligned_cols=82  Identities=15%  Similarity=0.073  Sum_probs=58.0

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhccc------------CCCChHHH-HH---H--------HHHHHHhHhHHHHHHH
Q 011164          404 EQGNTLFKAGKYARASKRYEKAVKYIEYD------------TSFGDEEK-KQ---A--------KALKVACNLNNAACKL  459 (492)
Q Consensus       404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~------------~~~~~~~~-~~---~--------~~~~~~l~~N~a~~~l  459 (492)
                      +..|.++..++|.+|.+.|++++..-...            .....++. +.   +        ......++.|+|.||.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            45677777788888888888877743211            00111111 11   1        2334568999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCccce
Q 011164          460 KLKDYKQAEKLCTKVQQQKKFLLLPI  485 (492)
Q Consensus       460 k~~~~~~ai~~~~~al~~dp~n~KA~  485 (492)
                      ++|+|++|+.+++++|+++|+|..|+
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~  109 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAK  109 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHH
Confidence            99999999999999999999998875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.28  E-value=4.5e-07  Score=77.70  Aligned_cols=73  Identities=18%  Similarity=0.027  Sum_probs=63.4

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      .+..+..+|..+++.|+|.+|+..|++||++               .+....+|.|+|.|+.++++|++|+.++.++|++
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~---------------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI---------------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhh---------------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3445567899999999999999999999986               2334778999999999999999999999999999


Q ss_pred             CCCCccce
Q 011164          478 KKFLLLPI  485 (492)
Q Consensus       478 dp~n~KA~  485 (492)
                      +|+|..+.
T Consensus       141 ~p~n~~~~  148 (169)
T d1ihga1         141 APEDKAIQ  148 (169)
T ss_dssp             CTTCHHHH
T ss_pred             CCCCHHHH
Confidence            99997654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=9.4e-07  Score=77.49  Aligned_cols=68  Identities=12%  Similarity=0.013  Sum_probs=61.0

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+...|+.+++.|+|++|+..|++|+++               ++-...+|.|+|.|+.++++|++|+.+|++||...+.
T Consensus        38 ~~~nlG~~~~~~g~~~~A~~~~~kAl~l---------------dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~  102 (192)
T d1hh8a_          38 ICFNIGCMYTILKNMTEAEKAFTRSINR---------------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG  102 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHcCCchhHHHHHHHHHHH---------------hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            3668999999999999999999999987               3345889999999999999999999999999998887


Q ss_pred             Ccc
Q 011164          481 LLL  483 (492)
Q Consensus       481 n~K  483 (492)
                      |.-
T Consensus       103 n~~  105 (192)
T d1hh8a_         103 NQL  105 (192)
T ss_dssp             CSE
T ss_pred             Cch
Confidence            654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.18  E-value=1.1e-06  Score=75.19  Aligned_cols=72  Identities=13%  Similarity=0.088  Sum_probs=62.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +.-+-..|..+++.++|.+|+..|+++++.               .+....+|.|+|.|+..+++|++|+.++.++|+++
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l---------------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGL---------------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhc---------------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            334556888899999999999999999987               23347889999999999999999999999999999


Q ss_pred             CCCccce
Q 011164          479 KFLLLPI  485 (492)
Q Consensus       479 p~n~KA~  485 (492)
                      |+|..++
T Consensus       129 P~n~~~~  135 (168)
T d1kt1a1         129 PQNKAAR  135 (168)
T ss_dssp             TTCHHHH
T ss_pred             CCCHHHH
Confidence            9997554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=8.6e-07  Score=76.09  Aligned_cols=71  Identities=14%  Similarity=0.040  Sum_probs=62.4

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+-..|..+++.++|.+|+..|+++|+.               ++..+.++.++|.|+.++|+|.+|+.++.+|++++|+
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~---------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~  128 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALEL---------------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN  128 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhc---------------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence            3446788899999999999999999987               3334788999999999999999999999999999999


Q ss_pred             Ccccee
Q 011164          481 LLLPIF  486 (492)
Q Consensus       481 n~KA~~  486 (492)
                      |..+..
T Consensus       129 n~~~~~  134 (170)
T d1p5qa1         129 NKAAKT  134 (170)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            976643

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.5e-06  Score=73.50  Aligned_cols=73  Identities=14%  Similarity=0.066  Sum_probs=64.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.|++.+|+..|.+++++               .+....++.|+|.|+..+|+|++|+.++.+++.++
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---------------~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          44 AIYYGNRSLAYLRTECYGYALGDATRAIEL---------------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhhhhhHHHHHhccccchHHHHHHHHHHH---------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            445668899999999999999999999987               33347889999999999999999999999999999


Q ss_pred             CCCcccee
Q 011164          479 KFLLLPIF  486 (492)
Q Consensus       479 p~n~KA~~  486 (492)
                      |+|..++.
T Consensus       109 p~~~~~~~  116 (159)
T d1a17a_         109 PHDKDAKM  116 (159)
T ss_dssp             TTCHHHHH
T ss_pred             CCCHHHHH
Confidence            99987654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.08  E-value=4.6e-06  Score=70.18  Aligned_cols=82  Identities=16%  Similarity=0.040  Sum_probs=66.1

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      ..+..+...|+.+++.|+|.+|+..|++++++.........+.    .+....+|+|++.||.++|+|++|+.+++++|+
T Consensus        53 ~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          53 FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE----GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc----cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677899999999999999999999999876543332222    233456799999999999999999999999999


Q ss_pred             cCCCCc
Q 011164          477 QKKFLL  482 (492)
Q Consensus       477 ~dp~n~  482 (492)
                      +.|+..
T Consensus       129 l~~~~~  134 (156)
T d2hr2a1         129 MIEERK  134 (156)
T ss_dssp             HHHHCC
T ss_pred             hhHHhh
Confidence            977543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=1e-06  Score=76.96  Aligned_cols=72  Identities=15%  Similarity=0.151  Sum_probs=62.1

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+-..|+.+++.|+|.+|+..|++|+.+               .+-...+|.|+|.||+++++|++|+.++.+|++++
T Consensus        38 ~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l---------------~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~  102 (201)
T d2c2la1          38 AVYYTNRALCYLKMQQPEQALADCRRALEL---------------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA  102 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhhhhhhhhhhHHHHHHHHh---------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            445668899999999999999999999986               22336789999999999999999999999999999


Q ss_pred             CCCccce
Q 011164          479 KFLLLPI  485 (492)
Q Consensus       479 p~n~KA~  485 (492)
                      |++...+
T Consensus       103 p~~~~~~  109 (201)
T d2c2la1         103 KEQRLNF  109 (201)
T ss_dssp             HHTTCCC
T ss_pred             cccHHHH
Confidence            8766544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.6e-06  Score=82.66  Aligned_cols=72  Identities=13%  Similarity=0.129  Sum_probs=62.9

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      -+.|+.+|+.|+|.+|+..|+++++...               ....++.++|.|++++++|++|+..++++++++|++.
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~   67 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEP---------------DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA   67 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            3578999999999999999999998622               2356789999999999999999999999999999999


Q ss_pred             cceeeee
Q 011164          483 LPIFNIY  489 (492)
Q Consensus       483 KA~~r~~  489 (492)
                      .+++++.
T Consensus        68 ~a~~~l~   74 (388)
T d1w3ba_          68 EAYSNLG   74 (388)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.8e-06  Score=81.31  Aligned_cols=72  Identities=13%  Similarity=0.016  Sum_probs=62.3

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL  482 (492)
Q Consensus       403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~  482 (492)
                      .++|..++++|+|.+|+..|+++++.-               +....+|.++|.|+.++++|++|+..++++++++|++.
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~---------------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   87 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQD---------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ   87 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc
Confidence            468999999999999999999999862               22367889999999999999999999999999999998


Q ss_pred             cceeeee
Q 011164          483 LPIFNIY  489 (492)
Q Consensus       483 KA~~r~~  489 (492)
                      .+++++.
T Consensus        88 ~~~~~la   94 (323)
T d1fcha_          88 TALMALA   94 (323)
T ss_dssp             HHHHHHH
T ss_pred             ccccccc
Confidence            8877653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.92  E-value=1e-06  Score=73.46  Aligned_cols=69  Identities=10%  Similarity=-0.030  Sum_probs=58.2

Q ss_pred             hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHh----------cCHHHHHHHHHHHH
Q 011164          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL----------KDYKQAEKLCTKVQ  475 (492)
Q Consensus       406 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~----------~~~~~ai~~~~~al  475 (492)
                      ++.+-+.+.|++|+..|++|+..               ++....++.|++.|++.+          +.+++|+..+++||
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~---------------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl   68 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKS---------------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL   68 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhh---------------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            44556778899999999999987               444588999999999865          45689999999999


Q ss_pred             hcCCCCccceeeee
Q 011164          476 QQKKFLLLPIFNIY  489 (492)
Q Consensus       476 ~~dp~n~KA~~r~~  489 (492)
                      +++|++..|+|++-
T Consensus        69 ~l~P~~~~a~~~lG   82 (145)
T d1zu2a1          69 LIDPKKDEAVWCIG   82 (145)
T ss_dssp             HHCTTCHHHHHHHH
T ss_pred             HhcchhhHHHhhHH
Confidence            99999999998753

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=5.1e-06  Score=77.99  Aligned_cols=75  Identities=13%  Similarity=0.019  Sum_probs=55.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|+.+++.|++.+|+..|+++++.-               +....++.|+|.||.++|+|++|+..+.+||+++
T Consensus       206 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  270 (323)
T d1fcha_         206 YLLWNKLGATLANGNQSEEAVAAYRRALELQ---------------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ  270 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhcccccccchhHHHHHHHHHHHh---------------hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            3455677888888888888888888888751               2235678899999999999999999999999999


Q ss_pred             CCCccceeee
Q 011164          479 KFLLLPIFNI  488 (492)
Q Consensus       479 p~n~KA~~r~  488 (492)
                      |++..+.++.
T Consensus       271 p~~~~~~~~~  280 (323)
T d1fcha_         271 RKSRGPRGEG  280 (323)
T ss_dssp             HTC------C
T ss_pred             CcChhhhhhh
Confidence            9888776654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.7e-06  Score=82.41  Aligned_cols=74  Identities=15%  Similarity=0.047  Sum_probs=59.1

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF  480 (492)
Q Consensus       401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~  480 (492)
                      .+...|+.+++.|+|.+|+..|+++++.-.               ....++.|+|.|+.++|+|++|+..+++||+++|+
T Consensus       307 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         307 SLNNLANIKREQGNIEEAVRLYRKALEVFP---------------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHTTSCT---------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             hhhHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            344556667777777777777777776421               23568899999999999999999999999999999


Q ss_pred             Cccceeeee
Q 011164          481 LLLPIFNIY  489 (492)
Q Consensus       481 n~KA~~r~~  489 (492)
                      +..|++++.
T Consensus       372 ~~~a~~~lg  380 (388)
T d1w3ba_         372 FADAYSNMG  380 (388)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999988764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=9.8e-06  Score=73.34  Aligned_cols=73  Identities=14%  Similarity=0.007  Sum_probs=63.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|..+++.|+|.+|+..|+++++.-               +.....+.|+|.|+.++++|.+|+..+.++++++
T Consensus        71 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~  135 (259)
T d1xnfa_          71 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD  135 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhchHHHHHHHHHHhhhhhhHHHHHH---------------hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            3456789999999999999999999999872               2235678999999999999999999999999999


Q ss_pred             CCCcccee
Q 011164          479 KFLLLPIF  486 (492)
Q Consensus       479 p~n~KA~~  486 (492)
                      |++..+.+
T Consensus       136 p~~~~~~~  143 (259)
T d1xnfa_         136 PNDPFRSL  143 (259)
T ss_dssp             TTCHHHHH
T ss_pred             cccHHHHH
Confidence            98876543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=5.1e-06  Score=78.60  Aligned_cols=91  Identities=4%  Similarity=-0.150  Sum_probs=56.5

Q ss_pred             HHHHHHHhhhHHHHcc-cHHHHHHHHHHHHHHhccc--------------CCCChH-----HHHHHHHHHHHhHhHHHHH
Q 011164          398 AAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYD--------------TSFGDE-----EKKQAKALKVACNLNNAAC  457 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~-~~~~A~~~Y~~al~~l~~~--------------~~~~~~-----~~~~~~~~~~~l~~N~a~~  457 (492)
                      ....+..+|+.+.+.+ ++.+|+..|+++++.-...              ....+.     ..-.+++....+|+|++.|
T Consensus        76 ~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~  155 (315)
T d2h6fa1          76 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV  155 (315)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHH
Confidence            4455666666666543 4666666666666542110              000000     0011233456788888888


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164          458 KLKLKDYKQAEKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       458 ~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~  488 (492)
                      +.++++|++|+.+|+++|+++|+|..||+++
T Consensus       156 ~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r  186 (315)
T d2h6fa1         156 IQEFKLWDNELQYVDQLLKEDVRNNSVWNQR  186 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHCCccHHHHHHH
Confidence            8888888888888888888888888877654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3e-06  Score=68.35  Aligned_cols=64  Identities=14%  Similarity=0.137  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc---CHHHHHHHHHHHHhcCCCCc--cceeeee
Q 011164          418 ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTKVQQQKKFLL--LPIFNIY  489 (492)
Q Consensus       418 A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~---~~~~ai~~~~~al~~dp~n~--KA~~r~~  489 (492)
                      +...|.+|.+.+...        -...+....++.|+|.|+++.+   ++++|+..++++|..+|++.  .+||+..
T Consensus        11 ~~~~l~~Ae~~Y~~a--------L~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg   79 (122)
T d1nzna_          11 SVEDLLKFEKKFQSE--------KAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA   79 (122)
T ss_dssp             HHHHHHHHHHHHHHH--------HHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH--------HhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence            445666666654321        1222345678999999999854   56789999999999998664  4776653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=1.8e-05  Score=62.85  Aligned_cols=39  Identities=13%  Similarity=0.103  Sum_probs=36.4

Q ss_pred             HHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164          447 KVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI  485 (492)
Q Consensus       447 ~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~  485 (492)
                      ...+++|+|.+|.++|+|++|..+|+++|+++|+|..|+
T Consensus        72 ~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          72 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            457899999999999999999999999999999998875

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00015  Score=58.28  Aligned_cols=74  Identities=16%  Similarity=0.153  Sum_probs=62.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +..+...|+.+++.|+|.+|+..|++|+.+-......        ......+|.+++.++..+++|++|+..+.+++..+
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~--------~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH--------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            4467789999999999999999999999874432221        34567899999999999999999999999999987


Q ss_pred             CC
Q 011164          479 KF  480 (492)
Q Consensus       479 p~  480 (492)
                      ++
T Consensus       110 ~~  111 (128)
T d1elra_         110 RT  111 (128)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=3e-05  Score=73.07  Aligned_cols=91  Identities=12%  Similarity=-0.038  Sum_probs=61.3

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc-------------CCCC-hHHH------HHHHHHHHHhHhHHHHH
Q 011164          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------------TSFG-DEEK------KQAKALKVACNLNNAAC  457 (492)
Q Consensus       398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-------------~~~~-~~~~------~~~~~~~~~l~~N~a~~  457 (492)
                      .+..+-..|..+-+++++.+|+..|++||++-...             ...+ ++..      -...+-...++.|++.+
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~  121 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence            34445556788888999999999999999863221             0111 1111      12233445677788888


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164          458 KLKLKDYKQAEKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       458 ~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~  488 (492)
                      +.++++|++|+..++++++++|+|..||+++
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~  152 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAKNYHAWQHR  152 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHhhccHHHHHHHHhhhhhhhhcchHHHHHH
Confidence            8888888888888888888888887777654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.54  E-value=5.1e-05  Score=59.63  Aligned_cols=62  Identities=13%  Similarity=-0.055  Sum_probs=55.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQ  475 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al  475 (492)
                      +..+...|..+++.+++.+|+..|+++++.               .+....++.|+|.||.++|++++|++..++.|
T Consensus        50 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---------------~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          50 EEAWRSLGLTQAENEKDGLAIIALNHARML---------------DPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhHHHhhccccccccc---------------ccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            556678899999999999999999999987               33347889999999999999999999999886

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.43  E-value=5.6e-05  Score=62.50  Aligned_cols=71  Identities=10%  Similarity=0.075  Sum_probs=54.7

Q ss_pred             HHHHHhhhHHH----------HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc-------
Q 011164          400 GKKKEQGNTLF----------KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-------  462 (492)
Q Consensus       400 ~~~K~~Gn~~f----------k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~-------  462 (492)
                      ..+-..|..++          ..+++++|+..|++|+++               ++....+|+|++.+|..++       
T Consensus        32 ~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l---------------~P~~~~a~~~lG~~y~~~g~~~~~~~   96 (145)
T d1zu2a1          32 DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---------------DPKKDEAVWCIGNAYTSFAFLTPDET   96 (145)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---------------cchhhHHHhhHHHHHHHcccchhhHH
Confidence            34445555555          346678999999999986               3344778999999998875       


Q ss_pred             ----CHHHHHHHHHHHHhcCCCCccce
Q 011164          463 ----DYKQAEKLCTKVQQQKKFLLLPI  485 (492)
Q Consensus       463 ----~~~~ai~~~~~al~~dp~n~KA~  485 (492)
                          .|.+|+..+.+||+++|+|.-++
T Consensus        97 ~~~~~~~~A~~~~~kal~l~P~~~~~~  123 (145)
T d1zu2a1          97 EAKHNFDLATQFFQQAVDEQPDNTHYL  123 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHhHHHhhhhhhcccccCCCHHHHH
Confidence                47999999999999999986443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.34  E-value=3.4e-05  Score=70.76  Aligned_cols=67  Identities=12%  Similarity=-0.006  Sum_probs=60.1

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP  484 (492)
Q Consensus       405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA  484 (492)
                      ++..++++|++.+|+..|+++++.               ++....++.|++.+++..|+|++|+..++++++++|++..+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~---------------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~   66 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKA---------------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   66 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHT---------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH
Confidence            467889999999999999999987               34458899999999999999999999999999999998776


Q ss_pred             ee
Q 011164          485 IF  486 (492)
Q Consensus       485 ~~  486 (492)
                      +.
T Consensus        67 ~~   68 (264)
T d1zbpa1          67 AS   68 (264)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=0.0002  Score=66.10  Aligned_cols=80  Identities=13%  Similarity=-0.020  Sum_probs=62.7

Q ss_pred             HHHHHH-HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHH
Q 011164          393 EEKIEA-AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (492)
Q Consensus       393 ~e~l~~-a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~  471 (492)
                      ..+.+. +..+...||.+...++|.+|+..|.+|+.+......         ......+|.|+|.||.++++|.+|+..+
T Consensus        30 ~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~---------~~~~a~~~~~~g~~y~~~~~~~~A~~~~  100 (290)
T d1qqea_          30 SYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN---------EDEAGNTYVEAYKCFKSGGNSVNAVDSL  100 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            334444 455677788778899999999999999997543211         2335789999999999999999999999


Q ss_pred             HHHHhcCCCC
Q 011164          472 TKVQQQKKFL  481 (492)
Q Consensus       472 ~~al~~dp~n  481 (492)
                      ++++++.+.+
T Consensus       101 ~~a~~~~~~~  110 (290)
T d1qqea_         101 ENAIQIFTHR  110 (290)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHhhHHhhhc
Confidence            9999886544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.00089  Score=61.55  Aligned_cols=76  Identities=29%  Similarity=0.256  Sum_probs=61.3

Q ss_pred             HHHHHHhhhHHHHc-ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164          399 AGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ  477 (492)
Q Consensus       399 a~~~K~~Gn~~fk~-~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~  477 (492)
                      +..+...|..++.+ ++|.+|+..|++|+.+......         ......++.|+|.++.++|+|.+|+..+.+++..
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~---------~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc---------hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence            44556667777664 9999999999999987543221         3455778999999999999999999999999999


Q ss_pred             CCCCcc
Q 011164          478 KKFLLL  483 (492)
Q Consensus       478 dp~n~K  483 (492)
                      .+.+..
T Consensus       188 ~~~~~~  193 (290)
T d1qqea_         188 SMGNRL  193 (290)
T ss_dssp             TSSCTT
T ss_pred             Cccchh
Confidence            887653

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00026  Score=70.84  Aligned_cols=77  Identities=10%  Similarity=-0.093  Sum_probs=67.0

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ  476 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~  476 (492)
                      .....+-..|..+..+++|.+|+..|++|++.-.               -....|+|+|.++.+.+++.+|+.++.+||.
T Consensus       150 ~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P---------------~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~  214 (497)
T d1ya0a1         150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP---------------SNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC---------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3345567789999999999999999999999833               3367899999999999999999999999999


Q ss_pred             cCCCCccceeee
Q 011164          477 QKKFLLLPIFNI  488 (492)
Q Consensus       477 ~dp~n~KA~~r~  488 (492)
                      ++|.+..|+.+.
T Consensus       215 ~~~~~~~a~~nL  226 (497)
T d1ya0a1         215 VKFPFPAASTNL  226 (497)
T ss_dssp             SSBCCHHHHHHH
T ss_pred             CCCCCHHHHHHH
Confidence            999998887664

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.77  E-value=0.0013  Score=55.97  Aligned_cols=69  Identities=6%  Similarity=-0.086  Sum_probs=60.3

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH--
Q 011164          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV--  474 (492)
Q Consensus       397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a--  474 (492)
                      .....+...++.+.+.|+|.+|+..+++++..               ++....+|.++..++.++|++.+|++.|.++  
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~---------------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFE---------------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh---------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34566778899999999999999999999987               5566889999999999999999999999887  


Q ss_pred             -----HhcCCC
Q 011164          475 -----QQQKKF  480 (492)
Q Consensus       475 -----l~~dp~  480 (492)
                           |.++|.
T Consensus       130 ~L~~eLG~~P~  140 (179)
T d2ff4a2         130 TLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHSCCCC
T ss_pred             HHHHHhCCCcC
Confidence                 567775

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0041  Score=57.01  Aligned_cols=73  Identities=8%  Similarity=-0.032  Sum_probs=58.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK  478 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d  478 (492)
                      +...--+|..++.+|++.+|+..|++++.......          ......++++++.|+..+|+|++|+..+.+++++.
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~----------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   81 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGW----------FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA   81 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC----------cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            33444468889999999999999999998643211          23456688999999999999999999999999886


Q ss_pred             CCC
Q 011164          479 KFL  481 (492)
Q Consensus       479 p~n  481 (492)
                      +.+
T Consensus        82 ~~~   84 (366)
T d1hz4a_          82 RQH   84 (366)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.12  E-value=0.00065  Score=63.66  Aligned_cols=41  Identities=5%  Similarity=-0.141  Sum_probs=36.0

Q ss_pred             HHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164          445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI  485 (492)
Q Consensus       445 ~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~  485 (492)
                      +-...++.++|.|+..++++++|+.+|++++++||.+...|
T Consensus       273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~  313 (334)
T d1dcea1         273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL  313 (334)
T ss_dssp             HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence            45678899999999999999999999999999999765543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0012  Score=65.73  Aligned_cols=43  Identities=14%  Similarity=-0.027  Sum_probs=38.6

Q ss_pred             HHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164          447 KVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY  489 (492)
Q Consensus       447 ~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~  489 (492)
                      ...++.|++.++.++++|++|+.++.+|++++|++..++++..
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg  193 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLA  193 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            3468899999999999999999999999999999998887653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.021  Score=51.91  Aligned_cols=69  Identities=7%  Similarity=-0.077  Sum_probs=56.4

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK  479 (492)
Q Consensus       402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp  479 (492)
                      ....|..++..|+|.+|+..|++++......         ........++.++|.+|.++|++++|+..+.+||++.+
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSL---------RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc---------ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            3446778888999999999999998764321         12456678899999999999999999999999998854

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.013  Score=43.54  Aligned_cols=48  Identities=10%  Similarity=0.016  Sum_probs=37.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHh
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL  461 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~  461 (492)
                      +..+...|+.+++.|+|.+|+..|+++|++-               +-...+++|++.+...+
T Consensus        46 ~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~---------------P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELD---------------PEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHhcCChHHHHHHHHHHHHhC---------------cCCHHHHHHHHHHHHHh
Confidence            4556778999999999999999999999872               22356777887665443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.92  E-value=0.0091  Score=55.38  Aligned_cols=89  Identities=3%  Similarity=-0.138  Sum_probs=53.9

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc--------------CCCC-hHHHHHH------HHHHHH-hHhHHHHH
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD--------------TSFG-DEEKKQA------KALKVA-CNLNNAAC  457 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~--------------~~~~-~~~~~~~------~~~~~~-l~~N~a~~  457 (492)
                      ..+...++.....+++.+|+..|+++++.-...              ...+ ++.....      ++-... .+.+++.+
T Consensus        74 ~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~  153 (334)
T d1dcea1          74 QHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  153 (334)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHH
Confidence            445556666777888999999999988752211              0011 1111111      111222 34456677


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164          458 KLKLKDYKQAEKLCTKVQQQKKFLLLPIFNI  488 (492)
Q Consensus       458 ~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~  488 (492)
                      +...+++.+|+..++++++++|+|.-||+.+
T Consensus       154 ~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l  184 (334)
T d1dcea1         154 AQAAVAPAEELAFTDSLITRNFSNYSSWHYR  184 (334)
T ss_dssp             HHTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            7777788888888888888888877777654

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.19  E-value=0.078  Score=39.10  Aligned_cols=65  Identities=14%  Similarity=0.117  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc-CCCChHHHHHHHHHHHHhHhHHHHHH
Q 011164          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-TSFGDEEKKQAKALKVACNLNNAACK  458 (492)
Q Consensus       394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-~~~~~~~~~~~~~~~~~l~~N~a~~~  458 (492)
                      ..+..|..+-.++.++-++|+|.+|+.+|.+|+.+|... ....+......-..++.=|.+||-..
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl~RAE~L   75 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENI   75 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            356788889999999999999999999999999987542 11223344444445566666666553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=91.92  E-value=0.24  Score=43.40  Aligned_cols=61  Identities=20%  Similarity=0.235  Sum_probs=45.8

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHH----hcCHHHHHHHHHHHH
Q 011164          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKVQ  475 (492)
Q Consensus       400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk----~~~~~~ai~~~~~al  475 (492)
                      ..+-..|..+|++++|.+|+..|++|.+. .                ...++.||+.+|.+    .+++..|+..+..+.
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-g----------------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~   65 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL-K----------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC   65 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC-C----------------CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc
Confidence            45677899999999999999999999864 1                14456677777776    556777777777666


Q ss_pred             hc
Q 011164          476 QQ  477 (492)
Q Consensus       476 ~~  477 (492)
                      ..
T Consensus        66 ~~   67 (265)
T d1ouva_          66 DL   67 (265)
T ss_dssp             HT
T ss_pred             cc
Confidence            54

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.79  E-value=0.44  Score=33.34  Aligned_cols=41  Identities=24%  Similarity=0.388  Sum_probs=33.5

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC
Q 011164          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG  436 (492)
Q Consensus       396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~  436 (492)
                      +..|...=-++..+.+.|+|++||.++++|..++....+.+
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~klt   45 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLT   45 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            45566667788999999999999999999999997654443

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=0.091  Score=37.21  Aligned_cols=39  Identities=26%  Similarity=0.319  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (492)
Q Consensus       393 ~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  431 (492)
                      .+.++.|..+-.+|..+=++|+|..|+.+|..|+.++..
T Consensus         5 ~~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~   43 (77)
T d1wr0a1           5 SPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   43 (77)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            456788899999999999999999999999999998743

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=88.17  E-value=1.5  Score=38.44  Aligned_cols=87  Identities=14%  Similarity=0.172  Sum_probs=60.8

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh---------HHHHH-----------HHHHHHHhHhHHHHHH
Q 011164          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD---------EEKKQ-----------AKALKVACNLNNAACK  458 (492)
Q Consensus       399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~---------~~~~~-----------~~~~~~~l~~N~a~~~  458 (492)
                      +......|.-+...|+|.+|+..|+++++.-........         ....+           ..+-....+.+++.++
T Consensus        30 ~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~  109 (264)
T d1zbpa1          30 ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLS  109 (264)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHH
Confidence            345567888899999999999999999986422100000         00000           0112344567889999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164          459 LKLKDYKQAEKLCTKVQQQKKFLLLPI  485 (492)
Q Consensus       459 lk~~~~~~ai~~~~~al~~dp~n~KA~  485 (492)
                      ++.+++++|+..+.+++++.|.+.-.+
T Consensus       110 ~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1         110 MVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence            999999999999999999999876544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=82.16  E-value=1.4  Score=38.08  Aligned_cols=63  Identities=21%  Similarity=0.111  Sum_probs=49.3

Q ss_pred             HHHhhhHHHH----cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHH----hcCHHHHHHHHHH
Q 011164          402 KKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTK  473 (492)
Q Consensus       402 ~K~~Gn~~fk----~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk----~~~~~~ai~~~~~  473 (492)
                      .-..|+.++.    .+++++|+..|+++.+.-                 ....+.|++.+|.+    .+++.+|+.++.+
T Consensus       181 ~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-----------------~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~k  243 (265)
T d1ouva_         181 CFNAGNMYHHGEGATKNFKEALARYSKACELE-----------------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKK  243 (265)
T ss_dssp             HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred             ccchhhhcccCcccccchhhhhhhHhhhhccc-----------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Confidence            3455656655    678999999999998741                 25677899999997    5589999999999


Q ss_pred             HHhcCCCC
Q 011164          474 VQQQKKFL  481 (492)
Q Consensus       474 al~~dp~n  481 (492)
                      |.+.....
T Consensus       244 Aa~~g~~~  251 (265)
T d1ouva_         244 GCKLGAKG  251 (265)
T ss_dssp             HHHHTCHH
T ss_pred             HHHCcCHH
Confidence            99886543